Query 000239
Match_columns 1804
No_of_seqs 738 out of 2295
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 00:50:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0996 Structural maintenance 100.0 2.4E-29 5.2E-34 313.3 87.0 653 240-929 214-985 (1293)
2 KOG0161 Myosin class II heavy 100.0 1.8E-23 3.9E-28 283.2 132.8 605 856-1537 1243-1876(1930)
3 COG1196 Smc Chromosome segrega 100.0 1.2E-22 2.6E-27 282.3 95.7 421 258-694 138-624 (1163)
4 KOG0161 Myosin class II heavy 100.0 5.8E-18 1.3E-22 230.4 126.9 729 689-1483 956-1708(1930)
5 TIGR00606 rad50 rad50. This fa 100.0 6.5E-20 1.4E-24 258.2 111.7 274 1425-1702 826-1145(1311)
6 TIGR02169 SMC_prok_A chromosom 99.9 2E-18 4.3E-23 247.3 89.6 116 530-646 429-570 (1164)
7 KOG4674 Uncharacterized conser 99.9 2.5E-12 5.4E-17 172.6 167.6 85 1257-1341 1110-1202(1822)
8 KOG0964 Structural maintenance 99.9 2.6E-16 5.7E-21 193.5 82.9 449 1071-1560 441-966 (1200)
9 TIGR00606 rad50 rad50. This fa 99.9 4.6E-14 1E-18 199.5 114.7 90 1119-1214 1029-1124(1311)
10 KOG4674 Uncharacterized conser 99.9 3.8E-11 8.2E-16 161.6 168.7 20 1645-1664 1522-1541(1822)
11 TIGR02168 SMC_prok_B chromosom 99.9 1.5E-14 3.2E-19 208.2 93.5 72 259-332 139-220 (1179)
12 KOG0933 Structural maintenance 99.9 1E-13 2.2E-18 172.1 84.5 376 260-652 144-579 (1174)
13 PF01576 Myosin_tail_1: Myosin 99.8 4.7E-22 1E-26 264.3 -0.1 571 897-1538 212-819 (859)
14 KOG0962 DNA repair protein RAD 99.8 1.3E-09 2.9E-14 142.8 107.2 275 1435-1722 833-1149(1294)
15 KOG0964 Structural maintenance 99.8 1.1E-11 2.4E-16 153.6 77.8 216 607-829 524-823 (1200)
16 TIGR02169 SMC_prok_A chromosom 99.8 2.8E-10 6.2E-15 163.6 104.4 15 1222-1236 644-659 (1164)
17 COG1196 Smc Chromosome segrega 99.8 1E-10 2.2E-15 163.8 96.3 49 1289-1337 699-747 (1163)
18 KOG0018 Structural maintenance 99.8 1.8E-11 3.8E-16 154.4 72.2 260 523-788 404-753 (1141)
19 TIGR02168 SMC_prok_B chromosom 99.7 1.1E-09 2.3E-14 158.1 101.6 99 1306-1409 993-1106(1179)
20 KOG0933 Structural maintenance 99.7 2.4E-10 5.3E-15 142.7 79.1 106 1552-1657 873-981 (1174)
21 KOG0996 Structural maintenance 99.7 2.4E-08 5.2E-13 127.6 85.1 224 691-914 779-1012(1293)
22 PRK02224 chromosome segregatio 99.6 1.1E-08 2.4E-13 141.7 85.5 19 662-680 127-145 (880)
23 PF10174 Cast: RIM-binding pro 99.6 8.4E-08 1.8E-12 124.3 81.2 78 749-826 290-371 (775)
24 PF10174 Cast: RIM-binding pro 99.5 1.4E-06 2.9E-11 113.3 89.4 135 689-830 286-424 (775)
25 PRK03918 chromosome segregatio 99.5 3E-07 6.5E-12 127.9 82.7 18 84-101 28-45 (880)
26 PF01576 Myosin_tail_1: Myosin 99.5 5E-15 1.1E-19 197.7 0.3 374 746-1152 349-734 (859)
27 KOG0250 DNA repair protein RAD 99.4 2E-08 4.3E-13 129.0 55.6 98 1202-1307 476-592 (1074)
28 PRK01156 chromosome segregatio 99.4 8.3E-07 1.8E-11 123.1 76.8 60 243-306 114-185 (895)
29 PRK04863 mukB cell division pr 99.4 3.5E-05 7.6E-10 108.0 95.3 21 626-646 711-731 (1486)
30 PRK03918 chromosome segregatio 99.3 1.1E-05 2.4E-10 112.4 78.3 6 760-765 252-257 (880)
31 PRK04863 mukB cell division pr 99.0 0.001 2.2E-08 93.8 94.3 78 1520-1597 1036-1114(1486)
32 KOG0250 DNA repair protein RAD 98.9 0.0013 2.9E-08 85.9 71.6 44 54-100 40-83 (1074)
33 PF12128 DUF3584: Protein of u 98.9 0.0031 6.8E-08 89.5 90.3 20 409-428 359-378 (1201)
34 KOG0994 Extracellular matrix g 98.8 0.0019 4.2E-08 82.9 55.1 71 698-768 1226-1296(1758)
35 PF05701 WEMBL: Weak chloropla 98.8 0.0024 5.2E-08 82.2 61.9 100 1029-1128 311-410 (522)
36 PF07888 CALCOCO1: Calcium bin 98.6 0.0031 6.7E-08 78.4 48.4 22 1031-1052 322-343 (546)
37 KOG4643 Uncharacterized coiled 98.6 0.0083 1.8E-07 77.1 53.5 41 851-891 301-341 (1195)
38 PF12128 DUF3584: Protein of u 98.6 0.021 4.5E-07 81.4 95.3 31 559-589 280-310 (1201)
39 PF07888 CALCOCO1: Calcium bin 98.5 0.0089 1.9E-07 74.5 49.3 45 1106-1150 412-456 (546)
40 KOG0018 Structural maintenance 98.5 0.014 3E-07 76.1 81.6 104 1611-1725 934-1052(1141)
41 PF05701 WEMBL: Weak chloropla 98.5 0.017 3.7E-07 74.5 68.2 75 944-1018 283-357 (522)
42 KOG0976 Rho/Rac1-interacting s 98.5 0.014 3E-07 72.7 63.3 43 861-903 266-308 (1265)
43 KOG0994 Extracellular matrix g 98.4 0.021 4.5E-07 73.9 56.7 46 761-806 1512-1557(1758)
44 KOG4643 Uncharacterized coiled 98.3 0.032 7E-07 72.0 59.1 20 1778-1797 1076-1095(1195)
45 PRK04778 septation ring format 98.3 0.043 9.2E-07 72.0 54.4 22 773-794 197-218 (569)
46 COG0419 SbcC ATPase involved i 98.3 0.072 1.6E-06 74.2 85.1 64 241-304 118-195 (908)
47 PF00038 Filament: Intermediat 98.2 0.015 3.2E-07 70.7 39.8 16 723-738 52-67 (312)
48 PF00038 Filament: Intermediat 98.1 0.044 9.5E-07 66.6 43.1 18 852-869 19-36 (312)
49 PRK10246 exonuclease subunit S 98.1 0.17 3.6E-06 71.3 89.1 67 241-307 131-211 (1047)
50 KOG0977 Nuclear envelope prote 98.1 0.024 5.2E-07 70.8 39.8 30 784-813 49-78 (546)
51 KOG0962 DNA repair protein RAD 98.1 0.13 2.9E-06 69.8 106.8 27 281-307 269-295 (1294)
52 KOG0977 Nuclear envelope prote 98.1 0.029 6.4E-07 70.0 40.0 78 749-826 38-120 (546)
53 PF09730 BicD: Microtubule-ass 98.1 0.11 2.3E-06 67.7 67.5 62 1119-1180 399-460 (717)
54 KOG4673 Transcription factor T 98.0 0.12 2.7E-06 63.9 68.7 42 1302-1343 907-948 (961)
55 PF05483 SCP-1: Synaptonemal c 97.9 0.18 3.9E-06 63.1 87.9 49 1304-1352 613-661 (786)
56 KOG0976 Rho/Rac1-interacting s 97.8 0.23 5E-06 62.5 68.5 30 797-826 98-127 (1265)
57 PF05557 MAD: Mitotic checkpoi 97.6 0.00029 6.3E-09 94.9 13.3 12 1186-1197 622-633 (722)
58 PF06160 EzrA: Septation ring 97.6 0.52 1.1E-05 61.6 54.1 22 749-770 157-178 (560)
59 PF05483 SCP-1: Synaptonemal c 97.6 0.45 9.8E-06 59.8 95.2 16 318-333 78-93 (786)
60 PF09730 BicD: Microtubule-ass 97.6 0.61 1.3E-05 61.0 67.0 62 399-460 38-103 (717)
61 PF09726 Macoilin: Transmembra 97.5 0.073 1.6E-06 70.2 32.7 69 1084-1152 588-656 (697)
62 PF05622 HOOK: HOOK protein; 97.4 2.9E-05 6.3E-10 104.1 0.0 34 777-810 294-327 (713)
63 PF05557 MAD: Mitotic checkpoi 97.4 0.001 2.2E-08 89.7 13.9 9 1188-1196 639-647 (722)
64 KOG0612 Rho-associated, coiled 97.4 1.3 2.7E-05 59.7 49.0 22 281-302 52-73 (1317)
65 PF06160 EzrA: Septation ring 97.3 1.2 2.7E-05 58.2 58.8 8 868-875 204-211 (560)
66 PHA02562 46 endonuclease subun 97.2 0.61 1.3E-05 61.8 36.2 30 757-786 217-246 (562)
67 PF05622 HOOK: HOOK protein; 97.2 8.8E-05 1.9E-09 99.5 0.0 63 747-809 247-309 (713)
68 KOG0946 ER-Golgi vesicle-tethe 97.2 0.41 9E-06 61.1 31.2 93 152-270 6-103 (970)
69 PHA02562 46 endonuclease subun 97.2 0.085 1.8E-06 69.8 28.0 19 883-901 178-196 (562)
70 COG1340 Uncharacterized archae 97.2 0.77 1.7E-05 53.2 38.2 35 749-783 58-92 (294)
71 PF05667 DUF812: Protein of un 97.1 0.65 1.4E-05 60.2 33.9 11 1033-1043 577-587 (594)
72 PF14915 CCDC144C: CCDC144C pr 97.1 0.94 2E-05 52.0 42.0 77 701-787 28-104 (305)
73 PF05667 DUF812: Protein of un 97.0 2.1 4.5E-05 55.8 36.8 11 1054-1064 577-587 (594)
74 PF15070 GOLGA2L5: Putative go 97.0 2.3 4.9E-05 55.7 52.4 41 695-735 27-67 (617)
75 KOG0946 ER-Golgi vesicle-tethe 97.0 1.2 2.5E-05 57.2 32.2 63 191-254 141-214 (970)
76 KOG1003 Actin filament-coating 97.0 0.75 1.6E-05 49.4 28.0 41 951-991 90-130 (205)
77 PRK11637 AmiB activator; Provi 96.8 0.86 1.9E-05 57.9 31.2 20 885-904 46-65 (428)
78 KOG0612 Rho-associated, coiled 96.8 4.2 9.1E-05 55.0 57.2 18 1728-1745 1283-1300(1317)
79 KOG0995 Centromere-associated 96.7 2.8 6E-05 52.4 48.4 10 639-648 79-88 (581)
80 PF09728 Taxilin: Myosin-like 96.6 2.5 5.4E-05 50.7 42.6 87 1053-1139 214-300 (309)
81 PF14915 CCDC144C: CCDC144C pr 96.6 2.1 4.5E-05 49.4 42.3 20 799-818 32-51 (305)
82 PF05911 DUF869: Plant protein 96.6 5.1 0.00011 53.5 63.3 90 863-952 594-683 (769)
83 KOG0995 Centromere-associated 96.6 3.6 7.7E-05 51.6 50.6 9 640-648 131-139 (581)
84 KOG0971 Microtubule-associated 96.5 4.4 9.6E-05 52.6 81.8 111 1468-1595 936-1050(1243)
85 PF15070 GOLGA2L5: Putative go 96.5 4.7 0.0001 52.8 55.6 21 795-815 84-104 (617)
86 PF12718 Tropomyosin_1: Tropom 96.5 0.51 1.1E-05 49.7 21.4 26 936-961 15-40 (143)
87 KOG0978 E3 ubiquitin ligase in 96.4 5.4 0.00012 51.9 72.3 32 403-434 91-122 (698)
88 PF14662 CCDC155: Coiled-coil 96.3 2.2 4.8E-05 46.1 28.4 41 978-1018 68-108 (193)
89 PF13514 AAA_27: AAA domain 96.3 11 0.00024 54.1 97.9 47 790-836 549-595 (1111)
90 COG5185 HEC1 Protein involved 96.2 4.4 9.6E-05 48.9 35.9 14 635-648 109-122 (622)
91 COG4372 Uncharacterized protei 96.2 3.9 8.4E-05 48.2 34.8 50 893-942 81-130 (499)
92 PF12718 Tropomyosin_1: Tropom 96.1 1 2.2E-05 47.4 21.2 25 943-967 81-105 (143)
93 KOG4673 Transcription factor T 96.0 6.6 0.00014 49.5 66.6 42 1111-1152 711-752 (961)
94 PF09728 Taxilin: Myosin-like 96.0 5.3 0.00011 48.0 42.7 50 840-889 18-67 (309)
95 KOG1029 Endocytic adaptor prot 95.9 8.4 0.00018 49.4 40.0 26 1763-1791 1074-1102(1118)
96 PF14662 CCDC155: Coiled-coil 95.8 3.6 7.7E-05 44.6 28.5 32 958-989 24-55 (193)
97 COG4372 Uncharacterized protei 95.6 6.9 0.00015 46.2 34.1 71 923-993 83-153 (499)
98 PRK09039 hypothetical protein; 95.6 1.8 3.8E-05 52.9 23.2 34 961-994 121-154 (343)
99 PF05010 TACC: Transforming ac 95.2 6.6 0.00014 43.9 31.0 66 951-1016 71-136 (207)
100 TIGR00618 sbcc exonuclease Sbc 95.2 25 0.00055 50.2 89.4 68 241-308 127-208 (1042)
101 KOG0963 Transcription factor/C 94.8 17 0.00037 46.3 49.4 18 752-769 65-82 (629)
102 PF13514 AAA_27: AAA domain 94.6 34 0.00075 49.2 101.6 29 443-471 299-327 (1111)
103 KOG4593 Mitotic checkpoint pro 94.5 21 0.00046 46.0 60.4 14 667-680 63-76 (716)
104 PF15619 Lebercilin: Ciliary p 94.3 11 0.00023 42.0 25.5 21 1041-1061 125-145 (194)
105 COG5185 HEC1 Protein involved 94.2 18 0.00039 44.0 41.3 9 664-672 202-210 (622)
106 TIGR03185 DNA_S_dndD DNA sulfu 94.1 31 0.00067 46.5 43.5 38 695-732 214-251 (650)
107 PF06008 Laminin_I: Laminin Do 94.1 16 0.00035 43.2 32.2 39 853-891 26-64 (264)
108 KOG0980 Actin-binding protein 93.9 30 0.00066 45.6 35.2 49 945-993 413-461 (980)
109 PF07111 HCR: Alpha helical co 93.8 28 0.00061 45.0 66.3 31 796-826 247-277 (739)
110 COG4477 EzrA Negative regulato 93.5 27 0.00058 43.8 51.4 18 753-770 164-181 (570)
111 PF10473 CENP-F_leu_zip: Leuci 93.0 13 0.00028 38.8 20.8 18 1114-1131 83-100 (140)
112 KOG0963 Transcription factor/C 93.0 35 0.00075 43.6 50.1 24 863-886 119-142 (629)
113 KOG0999 Microtubule-associated 92.2 38 0.00083 42.1 77.0 36 747-782 44-79 (772)
114 TIGR03185 DNA_S_dndD DNA sulfu 92.2 57 0.0012 44.0 42.8 40 747-786 210-249 (650)
115 PF09789 DUF2353: Uncharacteri 91.4 38 0.00082 40.5 27.8 38 846-883 67-104 (319)
116 PF04849 HAP1_N: HAP1 N-termin 91.1 39 0.00084 40.1 30.1 60 950-1009 242-301 (306)
117 KOG0971 Microtubule-associated 90.8 69 0.0015 42.5 80.6 21 716-736 229-249 (1243)
118 PF08317 Spc7: Spc7 kinetochor 90.7 48 0.001 40.4 31.3 11 951-961 151-161 (325)
119 COG3883 Uncharacterized protei 89.7 46 0.00099 38.6 29.3 53 946-998 42-94 (265)
120 PF10481 CENP-F_N: Cenp-F N-te 89.6 43 0.00092 38.3 19.9 68 871-938 38-105 (307)
121 PF05911 DUF869: Plant protein 89.6 93 0.002 42.1 67.5 26 526-551 132-157 (769)
122 PRK10246 exonuclease subunit S 89.4 1.2E+02 0.0027 43.3 82.4 12 84-95 35-46 (1047)
123 KOG4593 Mitotic checkpoint pro 89.1 84 0.0018 40.9 71.8 16 1261-1276 560-575 (716)
124 COG4477 EzrA Negative regulato 89.1 73 0.0016 40.2 53.3 17 777-793 200-216 (570)
125 PF10481 CENP-F_N: Cenp-F N-te 89.0 21 0.00046 40.6 17.0 116 339-457 18-133 (307)
126 PF13851 GAS: Growth-arrest sp 88.0 52 0.0011 37.1 25.4 47 865-911 34-80 (201)
127 PRK10869 recombination and rep 87.9 68 0.0015 42.2 24.0 66 226-307 105-177 (553)
128 PF08614 ATG16: Autophagy prot 87.9 5.9 0.00013 44.4 12.5 33 1114-1146 147-179 (194)
129 TIGR03007 pepcterm_ChnLen poly 87.7 69 0.0015 41.7 24.3 8 852-859 169-176 (498)
130 PF08317 Spc7: Spc7 kinetochor 86.9 83 0.0018 38.4 29.6 14 756-769 78-91 (325)
131 TIGR01843 type_I_hlyD type I s 85.5 1.1E+02 0.0025 38.6 25.2 11 868-878 84-94 (423)
132 PF05010 TACC: Transforming ac 85.2 71 0.0015 36.0 31.0 14 867-880 25-38 (207)
133 PF12325 TMF_TATA_bd: TATA ele 85.0 15 0.00031 37.5 12.1 64 747-810 17-80 (120)
134 PF08614 ATG16: Autophagy prot 84.9 12 0.00025 42.0 12.9 102 1037-1138 77-178 (194)
135 TIGR03007 pepcterm_ChnLen poly 84.4 1.4E+02 0.0031 38.8 24.9 23 794-816 164-186 (498)
136 PF09755 DUF2046: Uncharacteri 84.4 96 0.0021 36.8 34.9 13 662-674 23-35 (310)
137 TIGR01005 eps_transp_fam exopo 83.3 1.2E+02 0.0025 41.9 24.3 20 885-904 200-219 (754)
138 PF11559 ADIP: Afadin- and alp 83.2 69 0.0015 34.3 18.9 9 638-646 2-10 (151)
139 PF15066 CAGE1: Cancer-associa 83.0 1.3E+02 0.0028 37.2 29.2 12 631-642 155-166 (527)
140 PF05384 DegS: Sensor protein 82.8 73 0.0016 34.3 22.6 44 973-1016 23-66 (159)
141 PF07111 HCR: Alpha helical co 82.1 1.8E+02 0.0039 38.2 76.9 19 1032-1050 304-322 (739)
142 PF10498 IFT57: Intra-flagella 81.3 71 0.0015 39.3 18.4 15 633-647 70-84 (359)
143 KOG1853 LIS1-interacting prote 80.9 1E+02 0.0022 34.7 19.5 18 284-301 24-41 (333)
144 PF12325 TMF_TATA_bd: TATA ele 80.9 56 0.0012 33.4 14.4 77 749-825 26-102 (120)
145 KOG4809 Rab6 GTPase-interactin 80.3 1.7E+02 0.0038 36.9 35.1 21 999-1019 381-401 (654)
146 PF15066 CAGE1: Cancer-associa 80.1 1.6E+02 0.0035 36.4 30.0 89 851-939 317-408 (527)
147 KOG0999 Microtubule-associated 79.8 1.8E+02 0.0038 36.7 72.6 18 534-551 193-210 (772)
148 KOG1899 LAR transmembrane tyro 79.5 1.6E+02 0.0034 37.7 20.0 13 1774-1786 848-860 (861)
149 PF09787 Golgin_A5: Golgin sub 79.3 2.1E+02 0.0046 37.3 38.4 24 1106-1129 408-431 (511)
150 PRK10929 putative mechanosensi 78.3 3.2E+02 0.007 38.9 45.5 13 1679-1691 1003-1015(1109)
151 TIGR00634 recN DNA repair prot 78.2 2.4E+02 0.0052 37.4 25.5 7 605-611 36-42 (563)
152 PRK11281 hypothetical protein; 78.1 3.3E+02 0.0072 38.9 47.6 12 1680-1691 1007-1018(1113)
153 PF00769 ERM: Ezrin/radixin/mo 78.0 1.4E+02 0.0031 34.8 18.8 18 1263-1280 185-202 (246)
154 KOG0249 LAR-interacting protei 77.9 1.5E+02 0.0033 38.5 19.6 13 1636-1648 784-796 (916)
155 PF10168 Nup88: Nuclear pore c 77.8 2.7E+02 0.0059 37.8 23.8 74 656-738 533-606 (717)
156 KOG2991 Splicing regulator [RN 76.4 1.4E+02 0.0031 33.8 21.8 46 691-736 109-154 (330)
157 PF09789 DUF2353: Uncharacteri 75.9 1.9E+02 0.004 34.9 32.6 20 946-965 90-109 (319)
158 PF13851 GAS: Growth-arrest sp 75.7 1.5E+02 0.0031 33.5 27.9 27 1078-1104 102-128 (201)
159 PF10146 zf-C4H2: Zinc finger- 75.6 1.1E+02 0.0023 35.2 16.5 38 874-911 34-71 (230)
160 PF05384 DegS: Sensor protein 75.4 1.2E+02 0.0027 32.6 23.2 73 844-916 77-149 (159)
161 KOG0979 Structural maintenance 74.1 3.5E+02 0.0075 37.2 66.9 38 796-833 323-360 (1072)
162 PF06818 Fez1: Fez1; InterPro 73.2 1.6E+02 0.0035 32.9 22.1 9 867-875 33-41 (202)
163 smart00787 Spc7 Spc7 kinetocho 73.2 2.2E+02 0.0048 34.5 29.4 8 978-985 180-187 (312)
164 PF10498 IFT57: Intra-flagella 72.5 1.1E+02 0.0024 37.6 16.7 7 880-886 242-248 (359)
165 COG2433 Uncharacterized conser 72.5 58 0.0013 41.6 14.2 87 688-785 420-506 (652)
166 KOG0249 LAR-interacting protei 72.0 3.2E+02 0.007 35.8 22.0 7 1554-1560 717-723 (916)
167 COG2433 Uncharacterized conser 70.7 49 0.0011 42.3 13.0 74 750-823 426-499 (652)
168 PF06005 DUF904: Protein of un 69.7 58 0.0013 30.1 10.1 62 329-390 8-69 (72)
169 PF12795 MscS_porin: Mechanose 69.7 2.2E+02 0.0048 33.0 24.0 28 797-824 37-64 (240)
170 KOG0980 Actin-binding protein 69.5 4E+02 0.0087 36.0 53.8 7 1270-1276 727-733 (980)
171 PF15290 Syntaphilin: Golgi-lo 69.4 1.4E+02 0.003 34.5 15.0 40 866-912 69-108 (305)
172 PF13870 DUF4201: Domain of un 69.3 1.8E+02 0.004 31.9 23.1 15 909-923 44-58 (177)
173 TIGR00634 recN DNA repair prot 68.5 3.9E+02 0.0084 35.4 26.4 10 956-965 189-198 (563)
174 KOG4360 Uncharacterized coiled 68.5 2.8E+02 0.0061 34.9 18.2 26 957-982 276-301 (596)
175 PRK15422 septal ring assembly 67.4 98 0.0021 28.8 10.8 63 1049-1111 12-74 (79)
176 PF11559 ADIP: Afadin- and alp 66.9 1.8E+02 0.004 31.0 17.9 9 826-834 9-17 (151)
177 PRK10884 SH3 domain-containing 66.4 63 0.0014 36.5 11.9 64 528-591 93-156 (206)
178 KOG0982 Centrosomal protein Nu 65.6 3.3E+02 0.0072 33.5 27.0 6 1032-1037 379-384 (502)
179 PF07058 Myosin_HC-like: Myosi 65.4 1.7E+02 0.0037 34.2 14.8 174 1552-1752 2-218 (351)
180 PF06005 DUF904: Protein of un 63.6 1.2E+02 0.0027 28.0 11.1 55 940-994 9-63 (72)
181 COG4026 Uncharacterized protei 63.5 69 0.0015 35.3 10.8 66 853-918 137-202 (290)
182 KOG1937 Uncharacterized conser 63.0 3.8E+02 0.0082 33.3 38.1 16 844-859 293-308 (521)
183 TIGR02680 conserved hypothetic 62.0 7.7E+02 0.017 36.5 80.8 27 281-307 224-250 (1353)
184 PLN02939 transferase, transfer 62.0 6.2E+02 0.013 35.4 30.9 67 408-474 225-291 (977)
185 PF09787 Golgin_A5: Golgin sub 61.9 4.8E+02 0.01 34.1 38.5 21 857-877 115-135 (511)
186 PF12795 MscS_porin: Mechanose 61.7 3.1E+02 0.0067 31.8 23.3 6 1036-1041 201-206 (240)
187 PRK10884 SH3 domain-containing 61.5 67 0.0015 36.2 10.9 78 1257-1334 90-167 (206)
188 KOG4603 TBP-1 interacting prot 60.1 2.4E+02 0.0053 30.1 15.7 33 636-668 9-41 (201)
189 PRK11281 hypothetical protein; 59.4 7.4E+02 0.016 35.5 48.1 26 761-786 129-154 (1113)
190 PF12777 MT: Microtubule-bindi 59.2 4.2E+02 0.0092 32.6 22.0 23 748-770 265-287 (344)
191 PF13870 DUF4201: Domain of un 58.9 2.8E+02 0.0061 30.5 24.5 66 1035-1100 57-122 (177)
192 COG4026 Uncharacterized protei 58.0 1.1E+02 0.0024 33.9 11.1 57 1095-1151 147-203 (290)
193 KOG0979 Structural maintenance 56.9 7E+02 0.015 34.5 64.9 55 701-755 633-687 (1072)
194 PF14992 TMCO5: TMCO5 family 56.7 3E+02 0.0065 32.4 15.1 29 803-831 16-44 (280)
195 TIGR03017 EpsF chain length de 55.4 5.5E+02 0.012 32.8 26.9 25 873-897 172-196 (444)
196 PF12329 TMF_DNA_bd: TATA elem 55.2 1.3E+02 0.0029 28.0 9.9 33 748-780 35-67 (74)
197 KOG1937 Uncharacterized conser 54.6 5.2E+02 0.011 32.2 35.9 29 707-735 244-272 (521)
198 PF10212 TTKRSYEDQ: Predicted 54.5 5.8E+02 0.013 32.8 22.4 23 709-731 300-322 (518)
199 PF12329 TMF_DNA_bd: TATA elem 52.9 1.9E+02 0.0042 26.9 10.5 44 1033-1076 11-54 (74)
200 PF15290 Syntaphilin: Golgi-lo 52.9 4.3E+02 0.0094 30.8 16.1 22 852-873 76-97 (305)
201 PRK15422 septal ring assembly 51.6 2.1E+02 0.0045 26.8 11.0 44 1109-1152 30-73 (79)
202 PF14197 Cep57_CLD_2: Centroso 50.7 1.8E+02 0.0039 26.7 9.8 58 1425-1482 9-66 (69)
203 TIGR01000 bacteriocin_acc bact 49.8 6.8E+02 0.015 32.2 24.4 11 1001-1011 246-256 (457)
204 PF06810 Phage_GP20: Phage min 49.5 3E+02 0.0065 29.7 13.0 75 1551-1629 21-98 (155)
205 PF07889 DUF1664: Protein of u 49.4 2.8E+02 0.0061 28.7 12.0 71 1410-1480 50-120 (126)
206 PF09738 DUF2051: Double stran 48.5 3.4E+02 0.0074 32.6 14.5 47 1036-1082 79-125 (302)
207 PF11932 DUF3450: Protein of u 48.3 5.1E+02 0.011 30.3 16.9 10 897-906 81-90 (251)
208 KOG4403 Cell surface glycoprot 47.3 2.4E+02 0.0053 34.4 12.6 20 1673-1692 387-406 (575)
209 PF09738 DUF2051: Double stran 46.9 3.7E+02 0.0081 32.3 14.5 25 955-979 111-135 (302)
210 PF09755 DUF2046: Uncharacteri 46.7 5.9E+02 0.013 30.5 38.0 6 853-858 29-34 (310)
211 COG3074 Uncharacterized protei 46.3 2.2E+02 0.0049 25.6 10.4 8 1091-1098 54-61 (79)
212 PF15035 Rootletin: Ciliary ro 45.8 4.6E+02 0.01 29.1 15.2 147 1254-1437 17-175 (182)
213 COG0497 RecN ATPase involved i 44.6 8.6E+02 0.019 31.8 24.4 130 1545-1705 264-393 (557)
214 COG3074 Uncharacterized protei 44.1 2.4E+02 0.0053 25.4 10.7 44 1109-1152 30-73 (79)
215 KOG1850 Myosin-like coiled-coi 43.7 6.2E+02 0.014 30.0 45.2 39 1080-1118 247-285 (391)
216 PF04912 Dynamitin: Dynamitin 43.6 7.6E+02 0.016 31.0 26.9 26 706-731 89-114 (388)
217 PF05266 DUF724: Protein of un 42.8 5.2E+02 0.011 28.9 15.2 21 712-732 125-145 (190)
218 TIGR03017 EpsF chain length de 41.7 8.5E+02 0.019 31.0 24.6 15 887-901 179-193 (444)
219 PF10267 Tmemb_cc2: Predicted 41.6 4.2E+02 0.009 33.1 14.1 49 366-414 268-317 (395)
220 KOG1853 LIS1-interacting prote 40.8 6E+02 0.013 29.0 23.0 34 1055-1088 91-124 (333)
221 PF07106 TBPIP: Tat binding pr 39.8 2.8E+02 0.0061 30.2 11.4 89 1565-1659 73-163 (169)
222 KOG4809 Rab6 GTPase-interactin 39.0 9.5E+02 0.021 30.8 42.9 43 792-834 244-286 (654)
223 PF03962 Mnd1: Mnd1 family; I 38.7 5.1E+02 0.011 28.9 13.2 25 404-428 137-161 (188)
224 TIGR01000 bacteriocin_acc bact 38.6 9.7E+02 0.021 30.8 24.9 13 852-864 98-110 (457)
225 PF04912 Dynamitin: Dynamitin 37.6 9.2E+02 0.02 30.2 17.7 52 1557-1608 322-373 (388)
226 PF06785 UPF0242: Uncharacteri 36.7 8.1E+02 0.018 29.3 21.9 72 1035-1106 107-178 (401)
227 PF14073 Cep57_CLD: Centrosome 36.5 6.1E+02 0.013 27.8 22.7 32 853-884 59-90 (178)
228 PF07106 TBPIP: Tat binding pr 36.1 3.3E+02 0.0072 29.7 11.3 33 522-554 73-105 (169)
229 PF10234 Cluap1: Clusterin-ass 35.5 8E+02 0.017 28.9 18.1 58 1091-1148 177-234 (267)
230 PF07889 DUF1664: Protein of u 35.4 5.3E+02 0.011 26.8 13.5 10 1003-1012 41-50 (126)
231 PF03962 Mnd1: Mnd1 family; I 35.3 4.9E+02 0.011 29.1 12.4 28 401-428 102-129 (188)
232 cd00632 Prefoldin_beta Prefold 34.9 3.7E+02 0.0081 26.7 10.4 34 1562-1595 68-101 (105)
233 TIGR02338 gimC_beta prefoldin, 34.1 5E+02 0.011 26.1 11.2 28 1566-1593 76-103 (110)
234 PF10234 Cluap1: Clusterin-ass 33.6 8.6E+02 0.019 28.7 19.1 66 1065-1130 172-237 (267)
235 PRK09841 cryptic autophosphory 33.4 1.1E+03 0.024 32.3 18.0 25 873-897 268-292 (726)
236 PF05278 PEARLI-4: Arabidopsis 32.6 8.8E+02 0.019 28.5 15.9 13 845-857 167-179 (269)
237 PF04012 PspA_IM30: PspA/IM30 31.6 8.2E+02 0.018 27.8 20.8 135 867-1001 11-150 (221)
238 PF10267 Tmemb_cc2: Predicted 30.8 1.1E+03 0.023 29.6 15.3 20 792-811 299-318 (395)
239 PLN03229 acetyl-coenzyme A car 29.8 1.5E+03 0.034 30.5 22.7 27 14-40 24-54 (762)
240 PRK10869 recombination and rep 29.5 1.4E+03 0.031 30.0 28.7 11 604-614 35-45 (553)
241 KOG1962 B-cell receptor-associ 29.1 3.8E+02 0.0081 30.4 10.0 34 399-432 176-209 (216)
242 PF12777 MT: Microtubule-bindi 28.6 1.2E+03 0.026 28.7 25.3 18 498-515 209-226 (344)
243 KOG3091 Nuclear pore complex, 28.5 1.3E+03 0.029 29.3 15.8 6 1086-1091 386-391 (508)
244 KOG2991 Splicing regulator [RN 28.3 9.6E+02 0.021 27.6 26.3 9 1085-1093 238-246 (330)
245 PF15450 DUF4631: Domain of un 27.6 1.4E+03 0.031 29.3 59.3 12 1140-1151 456-467 (531)
246 KOG1656 Protein involved in gl 27.1 9.1E+02 0.02 26.9 12.4 60 1640-1716 81-152 (221)
247 PRK11519 tyrosine kinase; Prov 26.7 1.8E+03 0.039 30.2 18.9 11 876-886 271-281 (719)
248 PF04728 LPP: Lipoprotein leuc 26.6 4.4E+02 0.0096 23.2 8.1 29 846-874 5-33 (56)
249 PRK09343 prefoldin subunit bet 26.2 7.3E+02 0.016 25.5 14.1 40 1114-1153 74-113 (121)
250 COG1382 GimC Prefoldin, chaper 26.1 7.3E+02 0.016 25.5 12.6 18 799-816 21-38 (119)
251 PF02183 HALZ: Homeobox associ 24.9 2.5E+02 0.0054 23.4 5.8 38 1297-1334 3-40 (45)
252 PRK01203 prefoldin subunit alp 24.6 8.2E+02 0.018 25.5 11.0 37 438-474 85-121 (130)
253 TIGR03752 conj_TIGR03752 integ 23.6 8E+02 0.017 31.2 12.4 10 665-674 58-67 (472)
254 PF08826 DMPK_coil: DMPK coile 23.0 5.6E+02 0.012 23.0 10.0 21 976-996 17-37 (61)
255 KOG1962 B-cell receptor-associ 23.0 1.2E+03 0.025 26.7 12.7 32 1114-1145 168-199 (216)
256 PF04859 DUF641: Plant protein 22.9 1.4E+02 0.003 31.0 5.0 43 166-219 80-122 (131)
257 KOG2264 Exostosin EXT1L [Signa 22.9 5.4E+02 0.012 32.7 10.5 31 751-781 119-149 (907)
258 PRK09343 prefoldin subunit bet 22.3 8.6E+02 0.019 25.0 14.7 42 576-617 9-50 (121)
259 KOG2264 Exostosin EXT1L [Signa 22.2 7.1E+02 0.015 31.7 11.3 20 1738-1758 701-721 (907)
260 PF02403 Seryl_tRNA_N: Seryl-t 21.9 6.7E+02 0.014 24.9 9.7 69 844-912 29-100 (108)
261 PF05276 SH3BP5: SH3 domain-bi 21.5 1.3E+03 0.028 26.8 29.7 68 795-864 74-141 (239)
262 PF03148 Tektin: Tektin family 21.1 1.7E+03 0.036 27.9 39.8 272 670-951 37-368 (384)
263 PF05377 FlaC_arch: Flagella a 20.8 4.5E+02 0.0097 23.0 6.6 45 522-566 1-45 (55)
264 TIGR02449 conserved hypothetic 20.6 6.5E+02 0.014 22.9 9.3 28 1060-1087 5-32 (65)
265 KOG3809 Microtubule-binding pr 20.5 1.7E+03 0.037 27.7 16.3 125 281-425 441-569 (583)
266 COG1730 GIM5 Predicted prefold 20.3 1.1E+03 0.023 25.3 12.9 30 796-825 92-121 (145)
267 cd00632 Prefoldin_beta Prefold 20.1 8.6E+02 0.019 24.1 12.7 18 851-868 13-30 (105)
No 1
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.4e-29 Score=313.28 Aligned_cols=653 Identities=17% Similarity=0.212 Sum_probs=425.3
Q ss_pred HhhhhhHHHHHHHHhhhhhhhcccCcc-----cCc-----ccccchhhhHh--hHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 000239 240 IEKDQYVEVVADRMLSYLAMVVYQGEL-----MDS-----SISGKISHVEQ--STYMLIEKYNQMLYEIYQLGQCLSKPD 307 (1804)
Q Consensus 240 ~~~~~~~e~~~~~~l~~~~nvv~QGdv-----m~~-----~~~~~i~~lE~--~~~~~~ek~~~~~~eie~l~~~l~~~~ 307 (1804)
+-++.|||+.||||| ||||+| |+| ++.|.|+|||| ||+.|.+.+.+...++..|...+.+..
T Consensus 214 lLk~~gIDleHNRFL------ILQGEVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~ 287 (1293)
T KOG0996|consen 214 LLKSHGIDLEHNRFL------ILQGEVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKE 287 (1293)
T ss_pred HHHhcCCCCccceee------eehhhHHHHHhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHH
Confidence 456999999999999 999999 765 48999999999 999999999999999999999988877
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 000239 308 PERRVQEQFETVFAAARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTK 387 (1804)
Q Consensus 308 ~~~~~~ee~a~~~~~l~~el~~lk~~~~~~~e~l~~l~~E~~~l~~el~~~~~~l~~l~~el~~~~~el~~l~~~l~~~~ 387 (1804)
++++.+..++..++.- ..+.+.+|.++++.+...-...+-.+....+.+...+..+..+.+.+....
T Consensus 288 ----------~~~k~~e~ek~~lE~~---k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ 354 (1293)
T KOG0996|consen 288 ----------NRVKLVEKEKKALEGP---KNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDEN 354 (1293)
T ss_pred ----------HHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 7778888876555543 456999999999999999888889998989999999999999999998888
Q ss_pred HHhhHH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHhH---HH
Q 000239 388 EKLSLA-VTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAE-LSKEEFIKTENLVASLQETLQQSN---LM 462 (1804)
Q Consensus 388 eki~~~-~~k~~~l~~~~~~lk~eiee~~~ele~~~~eie~~~~~l~~~e-~l~~el~~~k~~~~~l~~~~~~k~---~~ 462 (1804)
+++... ..........+..++......++....|..++..+..+....+ .+++-...+++..+.++....++. .+
T Consensus 355 ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~ 434 (1293)
T KOG0996|consen 355 EKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKA 434 (1293)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhC
Confidence 888833 3334555556666777777777777777777777665555544 233333333333333333322222 22
Q ss_pred -------HHHHHHHHhcCCcchhhhhhhHHHHHHHHH----HHHHHhhhhhhhHhhhHHHhhhcCCCCCCcccchHHHHH
Q 000239 463 -------LEKSEEVLAQIDIPEELQSLDMVERIKWLV----SERHELKGISLDFYKLKDAVSLIDVPETGSFSDLESRLA 531 (1804)
Q Consensus 463 -------l~~~e~~l~~~~~~~~~~~~e~~ek~~~L~----e~r~el~~~~~e~~~l~e~~~~~~~~~~~~~~ele~~i~ 531 (1804)
..++...+..+..........+.+-+..+. ..+.++.....++.+|...+..... .....++++.
T Consensus 435 pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~----e~~vaesel~ 510 (1293)
T KOG0996|consen 435 PEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS----ELDVAESELD 510 (1293)
T ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 222222222222111111222222222222 1144555566667776666664433 2334455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 000239 532 WLKESFYQAKDEANVLLDQLNRM-----------------KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIV 594 (1804)
Q Consensus 532 ~L~~~~~~~~~e~~~l~~el~~~-----------------~~~~~~~~~~l~~~l~~~~~e~e~L~~el~~l~~e~~e~~ 594 (1804)
.|....+.+...+..++..+..+ +.++..++.+.+..+..+..+...+...+..++++..+++
T Consensus 511 ~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 511 ILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444332 3334445555666666666666666666668888888888
Q ss_pred HHhchhhhhhhHHHHHHHHHh----------------CCCCccchhh--------hccCCChhhHHHHHHHHHHhh----
Q 000239 595 EKANKISLEKDHMVRVLLKES----------------GTSMEDQDVA--------SQTSSDPTAIISKCIGKIREQ---- 646 (1804)
Q Consensus 595 ~~~~~~~~~~~~l~~~l~el~----------------~~~i~~y~~A--------~~~~vd~~~~a~~~~~~Lk~~---- 646 (1804)
..++..++ .++++..|.++. ..+ .+|++| ++|||||.++|+.||+||+.+
T Consensus 591 s~~~~~~s-~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id-~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgr 668 (1293)
T KOG0996|consen 591 SSLSSSRS-RNKVLDALMRLKESGRIPGFYGRLGDLGAID-EKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGR 668 (1293)
T ss_pred HHHHhhhh-hhHHHHHHHHHHHcCCCCccccccccccccc-hHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCc
Confidence 87777555 677776666554 222 249988 888899999999999999997
Q ss_pred cc--CCCC--------CCCcChHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 000239 647 TC--ASSD--------TSGADSEMLQTMQSLLYVSYQELILCQQILEEDALVRLQLNDLS-------------------- 696 (1804)
Q Consensus 647 ~~--~l~~--------~~~~~~e~~~~l~~~l~~l~~E~~~l~~~le~~~~~~~~~~~l~-------------------- 696 (1804)
+| +|++ ..+..|+-.++|+|++.+.+.++..+||++.+++++..++.++.
T Consensus 669 aTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lI 748 (1293)
T KOG0996|consen 669 ATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLI 748 (1293)
T ss_pred eeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecceee
Confidence 23 5553 22666788999999999999999999999999999988888873
Q ss_pred -------------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 000239 697 -------------NKLRVASEEF---GALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNS 760 (1804)
Q Consensus 697 -------------~~~~~l~~e~---~~l~~e~~~l~~el~~~e~k~~~l~e~l~~~~~k~k~l~~e~~~l~~~ieel~~ 760 (1804)
..+ .....+ .........+...+.........+.+.+.........+......++..+..+..
T Consensus 749 e~SGtmtGGG~~v~~g-~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~ 827 (1293)
T KOG0996|consen 749 EKSGTMTGGGKKVKGG-RMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTA 827 (1293)
T ss_pred cccccccCCCCcCCCC-CCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHH
Confidence 000 000001 112223334444444444444444444333332222222333445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 000239 761 EIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIILPVNSVFK 840 (1804)
Q Consensus 761 ele~l~~el~~~e~~~~el~~~l~~l~~~~e~~~~Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~~~i~el~~~~~~~~~ 840 (1804)
++..+...+..++.++.+++..+........+++.++..|..++.+++++...-.. +..+..+++.|..++.
T Consensus 828 ~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~------- 899 (1293)
T KOG0996|consen 828 SVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGG------- 899 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhc-------
Confidence 55555556666666666666666555666777888888899999999888644443 6788889988888875
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 841 EPLEKVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVE 920 (1804)
Q Consensus 841 e~~~k~~~l~~~~~ele~~l~~le~ei~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~~L~~e~~~le~~~~ele 920 (1804)
..+......+..+..++..+..+|..+...+......+.+++..+.+++.++...+..+..|......+.....+++
T Consensus 900 ---e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~ 976 (1293)
T KOG0996|consen 900 ---EKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELE 976 (1293)
T ss_pred ---hhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 23344445666666666666666777777777666667777777777777777666666666666665555555555
Q ss_pred HHHHHHHHH
Q 000239 921 EELEKAIEE 929 (1804)
Q Consensus 921 ~~l~~~~~e 929 (1804)
..+.....-
T Consensus 977 ~~~~e~~~~ 985 (1293)
T KOG0996|consen 977 KEYKEAEES 985 (1293)
T ss_pred HHHHHHHHH
Confidence 444444333
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.8e-23 Score=283.22 Aligned_cols=605 Identities=20% Similarity=0.240 Sum_probs=392.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000239 856 CHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTS 935 (1804)
Q Consensus 856 le~~l~~le~ei~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~~L~~e~~~le~~~~ele~~l~~~~~el~~~~~ 935 (1804)
++..+.++...+..+.+.+.++......+..+...+...+.+.+..+..+.... ..+..++..+..
T Consensus 1243 ~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~--------------~~~~~qle~~k~ 1308 (1930)
T KOG0161|consen 1243 LEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDK--------------QALESQLEELKR 1308 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444443333 333334444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000239 936 KFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKT-IKSLEDSLAQVEANV 1014 (1804)
Q Consensus 936 ~l~el~~~i~~le~~l~~l~~ei~~l~~e~e~le~~~~~l~~ele~l~~el~~l~~~l~e~~~~-i~~Le~~l~~~e~~l 1014 (1804)
.+.+..+....+...+..++.++..+...++.-...+..+...+.++..++..++.++...... ...++.....+...+
T Consensus 1309 qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~l 1388 (1930)
T KOG0161|consen 1309 QLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRL 1388 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5666666677777888888889999999999999999999999999999999999999765554 788888888888888
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHH
Q 000239 1015 AMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAV-------LTEQNNVLQVGKTT 1087 (1804)
Q Consensus 1015 ~~l~~e~~~~~~~~~~~le~ele~l~~el~~l~~~l~~~~~~i~~Le~~l~~le~~l~~-------l~~el~~~~~~~~~ 1087 (1804)
..++.. .+.+......++.....++.++..+...+......+..++..+..+...+.. +..++...+.....
T Consensus 1389 q~~qe~-~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~ 1467 (1930)
T KOG0161|consen 1389 QELEEQ-IEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQ 1467 (1930)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877 4677777888888888888888887777766666666666655555444444 44444444444444
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000239 1088 LENELQMLKDEAG-------SQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIG 1160 (1804)
Q Consensus 1088 le~el~~l~~el~-------~~~~~l~~~~~~l~~l~~~l~~~~~~l~~Le~~~~~le~e~~~l~~~l~~l~~el~~~~~ 1160 (1804)
+...+..+...+. .+...-..+...+..+...+..+...+++++...+.+..+..++...+..+...+.....
T Consensus 1468 ~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~ 1547 (1930)
T KOG0161|consen 1468 LSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEED 1547 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4444444444433 333344445566666666666666667777777777777777776666665544322222
Q ss_pred hhHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHhhHhh--ccccccCCCccccccccccchh
Q 000239 1161 SLESRSVELIGHLNDLQMHMKDERLLSAVKSCFERKIEGLQNMELIVEDIRIGVVG--KGSAVTEGNSDVTKSFMDDIDN 1238 (1804)
Q Consensus 1161 ~~~~~~~~l~~~l~~l~~~~~d~~~l~~~~~~~~kk~~~l~~~~~~l~~l~~~l~~--~~~~~~e~~~~~~~~l~~~l~~ 1238 (1804)
.. ..+.-.+..+...+. ..+...-..+. ...+++...+.+++..+.. +++. ...+.+++|.|++++
T Consensus 1548 ~~----lr~~~~~~~~r~e~e--r~l~ek~Ee~E---~~rk~~~~~i~~~q~~Le~E~r~k~---e~~r~KKkle~di~e 1615 (1930)
T KOG0161|consen 1548 KK----LRLQLELQQLRSEIE--RRLQEKDEEIE---ELRKNLQRQLESLQAELEAETRSKS---EALRSKKKLEGDINE 1615 (1930)
T ss_pred HH----HHHHHHHHHHHHHHH--HHHHhhhHHHH---HHHHHHHHHHHHHHHhhhHHHHHHH---HHHhhhhhhhcchHH
Confidence 11 110000111111000 01222222222 2356777788888876543 2321 336677899999999
Q ss_pred hhhhhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhH
Q 000239 1239 IEMYDNEVTVLDADDITSCFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNL 1318 (1804)
Q Consensus 1239 ~~~~~~~~~~~~~e~~~~~lr~~l~e~~~~~k~L~~~~~~l~~~~d~~i~~l~~~lq~~e~~~~~~~~e~e~lk~~l~~l 1318 (1804)
+++..++++....+. .+.+..++.+++.++..+++.....+. +...+...++++..++.+++.|+..+..+
T Consensus 1616 lE~~ld~ank~~~d~-----~K~lkk~q~~~k~lq~~~e~~~~~~~e----~~~q~~~aerr~~~l~~E~eeL~~~l~~~ 1686 (1930)
T KOG0161|consen 1616 LEIQLDHANKANEDA-----QKQLKKLQAQLKELQRELEDAQRAREE----LLEQLAEAERRLAALQAELEELREKLEAL 1686 (1930)
T ss_pred HHHHHHHHHHhhHHH-----HHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887555 578899999999999999877665554 78888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhccccccccCCCCccCCCCcchhhhhc-----
Q 000239 1319 EGCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNSVPELENLNRGFSQPESKVDGDDTTDHQKSL----- 1393 (1804)
Q Consensus 1319 e~e~~~le~~l~~le~el~~l~~~~~~~~~el~~el~~~ll~~~~~~ele~~~~~~~~~~~kl~~~~~~l~~~~l----- 1393 (1804)
.+.++.++.++..+...++.+.++. +.+...+.|++.++..|. ..+
T Consensus 1687 ~Rarr~aE~e~~E~~e~i~~~~~~~----------------------------s~l~~~KrklE~~i~~l~-~elee~~~ 1737 (1930)
T KOG0161|consen 1687 ERARRQAELELEELAERVNELNAQN----------------------------SSLTAEKRKLEAEIAQLQ-SELEEEQS 1737 (1930)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcc----------------------------cchhhHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999998888777655432 222223334444433332 111
Q ss_pred ----cccchHH---HHHHHHHHHHhhchhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000239 1394 ----HGNRYHE---AAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVD 1466 (1804)
Q Consensus 1394 ----~~~e~~~---~~e~L~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~e~e~a~~~~~~Er~~~~~~l~~Le~~i~ 1466 (1804)
..+...+ -+..+...++..+....++...+..|...+++|+.+|.+++.++... .++.+..|++.|+
T Consensus 1738 ~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~------~k~~i~~Learir 1811 (1930)
T KOG0161|consen 1738 ELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKG------GKKQIAKLEARIR 1811 (1930)
T ss_pred HHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------cHHHHHHHHHHHH
Confidence 1222222 34456666788888888889999999999999999999998876655 5788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhhhhhhcccchh
Q 000239 1467 ALEHSCKELRLKVEDLEAKEEKLKENEAKISLLYDRLSRKEQEAEGLFLSPLQIRKLVDKISGIEIPYAES 1537 (1804)
Q Consensus 1467 ~l~~~~~~l~~~l~~~~~~e~~l~~~~~ei~~l~~~l~~~~~~le~~~~~~~~~~~l~~ki~~l~~~~~e~ 1537 (1804)
.|+.+++.-.+.-.+. ...++..+..+..+...+..-.+..+ .....+..+..++..+...+.++
T Consensus 1812 ~LE~~l~~E~~~~~e~---~k~~rk~er~vkEl~~q~eed~k~~~---~~q~~~dkl~~k~~~~krQleea 1876 (1930)
T KOG0161|consen 1812 ELESELEGEQRRKAEA---IKGLRKKERRVKELQFQVEEDKKNIE---RLQDLVDKLQAKIKQYKRQLEEA 1876 (1930)
T ss_pred HHHHHHhHhhhhhHHH---hHHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999988877776654 35566666666666666665333322 11344556666666555555543
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.2e-22 Score=282.26 Aligned_cols=421 Identities=17% Similarity=0.171 Sum_probs=226.4
Q ss_pred hhhcccCcc-----cCcccccchhhhHh--hHHHHHHHHHHHHHHHHHHHhhhcCCCCch---------hhhh-hhHHHH
Q 000239 258 AMVVYQGEL-----MDSSISGKISHVEQ--STYMLIEKYNQMLYEIYQLGQCLSKPDPER---------RVQE-QFETVF 320 (1804)
Q Consensus 258 ~nvv~QGdv-----m~~~~~~~i~~lE~--~~~~~~ek~~~~~~eie~l~~~l~~~~~~~---------~~~e-e~a~~~ 320 (1804)
-+||+||+| |+|...-. ++|+ |++.|..++.++...++.....+.++...+ ...+ +.+.+|
T Consensus 138 ~~iV~QG~V~~i~~~kp~err~--iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y 215 (1163)
T COG1196 138 YSIVSQGKVEEIINAKPEERRK--LIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERY 215 (1163)
T ss_pred CceeecccHHHHHcCCHHHHHH--HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999 88884322 5555 999999999999999999999999876533 1224 888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHhchhH
Q 000239 321 AAARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKAL 400 (1804)
Q Consensus 321 ~~l~~el~~lk~~~~~~~e~l~~l~~E~~~l~~el~~~~~~l~~l~~el~~~~~el~~l~~~l~~~~eki~~~~~k~~~l 400 (1804)
..++.++..+.... +...+..+..++..+...+..++..+..+...+......+..+..++..+...+...
T Consensus 216 ~~l~~e~~~~~~~~--~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~------- 286 (1163)
T COG1196 216 QELKAELRELELAL--LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL------- 286 (1163)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 88888865555542 222444444555555555555555555555555555555555555555554444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHH
Q 000239 401 VQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAE----LSKEEFIKTENLVASL-------QETLQQSNLMLEKSEEV 469 (1804)
Q Consensus 401 ~~~~~~lk~eiee~~~ele~~~~eie~~~~~l~~~e----~l~~el~~~k~~~~~l-------~~~~~~k~~~l~~~e~~ 469 (1804)
+.....++..+.++..++..+...+..+........ .+.+.+...+...... ..............+..
T Consensus 287 ~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~ 366 (1163)
T COG1196 287 QEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEK 366 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333444444555444444444433333222 1222222222222221 11111111222222222
Q ss_pred Hh----cCCcchhhhhhhHHHHHHHHHHHHHHhhhhhhhHhhhHHHhhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 000239 470 LA----QIDIPEELQSLDMVERIKWLVSERHELKGISLDFYKLKDAVSLIDVPETGSFSDLESRLAWLKESFYQAKDEAN 545 (1804)
Q Consensus 470 l~----~~~~~~~~~~~e~~ek~~~L~e~r~el~~~~~e~~~l~e~~~~~~~~~~~~~~ele~~i~~L~~~~~~~~~e~~ 545 (1804)
.. .++..+......+......+.....++..+..+++.+...+.+... ....+..++..+...+...+.++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 442 (1163)
T COG1196 367 LSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSE----RLEDLKEELKELEAELEELQTELE 442 (1163)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhHH
Confidence 22 1111111122222222222223333444444444444444443322 233334444445555554444555
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhch----------hhhhhhHHHHHHH
Q 000239 546 VLLDQLNRM---KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANK----------ISLEKDHMVRVLL 612 (1804)
Q Consensus 546 ~l~~el~~~---~~~~~~~~~~l~~~l~~~~~e~e~L~~el~~l~~e~~e~~~~~~~----------~~~~~~~l~~~l~ 612 (1804)
.+..++..+ ++.+...+..+...+..+...+..+..++..++..+..+...... .....+.++|.|.
T Consensus 443 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G~v~ 522 (1163)
T COG1196 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVA 522 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccchHH
Confidence 555554444 444555666666666666666666666666666655444442221 1111345668999
Q ss_pred HHhCCCCccchhh---------hccCCChhhHHHHHHHHHHhh----cc--CCCCCCCcC------hHHHHHhhhhhHhh
Q 000239 613 KESGTSMEDQDVA---------SQTSSDPTAIISKCIGKIREQ----TC--ASSDTSGAD------SEMLQTMQSLLYVS 671 (1804)
Q Consensus 613 el~~~~i~~y~~A---------~~~~vd~~~~a~~~~~~Lk~~----~~--~l~~~~~~~------~e~~~~l~~~l~~l 671 (1804)
+++.++ .+|.+| ..++|+++.+|..|+.|||.+ +| |++...+.. ..+|-++-.-++.-
T Consensus 523 ~li~v~-~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~~ 601 (1163)
T COG1196 523 ELIKVK-EKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDF 601 (1163)
T ss_pred HhcCcC-hHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhcC
Confidence 999997 689988 555599999999999999996 23 555311111 12233334445577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000239 672 YQELILCQQILEEDALVRLQLND 694 (1804)
Q Consensus 672 ~~E~~~l~~~le~~~~~~~~~~~ 694 (1804)
++.|..++..++.++.+...+..
T Consensus 602 d~~~~~~~~~~l~~t~Iv~~l~~ 624 (1163)
T COG1196 602 DPKYEPAVRFVLGDTLVVDDLEQ 624 (1163)
T ss_pred CHHHHHHHHHHhCCeEEecCHHH
Confidence 77888888888877766544443
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.96 E-value=5.8e-18 Score=230.39 Aligned_cols=729 Identities=18% Similarity=0.220 Sum_probs=418.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 689 RLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLN 768 (1804)
Q Consensus 689 ~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~el~~~e~k~~~l~e~l~~~~~k~k~l~~e~~~l~~~ieel~~ele~l~~e 768 (1804)
......++.++..+..++..+++....+.++...++..+..+.+.+.....+.+++.+...++...+++++..+++-+..
T Consensus 956 ~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~ 1035 (1930)
T KOG0161|consen 956 ELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRI 1035 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556778888888888899999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHH
Q 000239 769 LQEQESTISECRDQINRLSNDLDCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIILPVNSVFKEPLEKVNW 848 (1804)
Q Consensus 769 l~~~e~~~~el~~~l~~l~~~~e~~~~Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~~~i~el~~~~~~~~~e~~~k~~~ 848 (1804)
+.+++.....+..++..+ +..+..++..+.++...+...+..+..+...+.+.. ..+..
T Consensus 1036 r~e~Ek~~rkle~el~~~----------~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~-----------~~~~~ 1094 (1930)
T KOG0161|consen 1036 RMELEKAKRKLEGELKDL----------QESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ-----------AEVAQ 1094 (1930)
T ss_pred HHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----------HHHHH
Confidence 888887777766665433 334444566666666666666666666665544432 34555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q 000239 849 IASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQL-----------ADEKRQVEVGKK 917 (1804)
Q Consensus 849 l~~~~~ele~~l~~le~ei~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~~L-----------~~e~~~le~~~~ 917 (1804)
+.+.+.+++..+.++.+++...+.....+++...++...+..+..++...-...... ..-...++....
T Consensus 1095 l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~ 1174 (1930)
T KOG0161|consen 1095 LQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETL 1174 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677777766666666666666666666666666666666555542221111 111111111111
Q ss_pred HHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 918 NVEEELEKAI----EEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKL 993 (1804)
Q Consensus 918 ele~~l~~~~----~el~~~~~~l~el~~~i~~le~~l~~l~~ei~~l~~e~e~le~~~~~l~~ele~l~~el~~l~~~l 993 (1804)
..+..+..++ ..+..+...++.+......+......++.++..+..++.........+..-...+..++..++.++
T Consensus 1175 ~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~ 1254 (1930)
T KOG0161|consen 1175 DHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKL 1254 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 2222222221 122233333444444444444445555555555555555544444444444444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 994 TEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAV 1073 (1804)
Q Consensus 994 ~e~~~~i~~Le~~l~~~e~~l~~l~~e~~~~~~~~~~~le~ele~l~~el~~l~~~l~~~~~~i~~Le~~l~~le~~l~~ 1073 (1804)
......+..+-.....+..++..+... ..+....+..+......+..++..+...+..-......+...+.++..++..
T Consensus 1255 ~~~~~~~~~l~~q~~~l~~E~~~l~~~-lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~ 1333 (1930)
T KOG0161|consen 1255 DEQERLRNDLTAKRSRLQNENEELSRQ-LEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDL 1333 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444444444455554444444 2334445555555556666666666666666666666667777777777777
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1074 LTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTT-IKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACR 1152 (1804)
Q Consensus 1074 l~~el~~~~~~~~~le~el~~l~~el~~~~~~l~~~~~~-l~~l~~~l~~~~~~l~~Le~~~~~le~e~~~l~~~l~~l~ 1152 (1804)
+..+++.-...+..+...+.+...++..+..++...... ...+.+....+...+..++.....+......+..-...+.
T Consensus 1334 l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~ 1413 (1930)
T KOG0161|consen 1334 LREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQ 1413 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777766544333 5555555555555555555555444443333333222222
Q ss_pred HHHhhhhchhHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHhhHhhccccccCCCccccccc
Q 000239 1153 DELAGTIGSLESRSVELIGHLNDLQMHMKDERLLSAVKSCFERKIEGLQNMELIVEDIRIGVVGKGSAVTEGNSDVTKSF 1232 (1804)
Q Consensus 1153 ~el~~~~~~~~~~~~~l~~~l~~l~~~~~d~~~l~~~~~~~~kk~~~l~~~~~~l~~l~~~l~~~~~~~~e~~~~~~~~l 1232 (1804)
.++......+.. ..+......++ +++++.++..++......+..+ +.........
T Consensus 1414 ~el~d~~~d~~~---------------------~~~~~~~le~k---~k~f~k~l~e~k~~~e~l~~El-d~aq~e~r~~ 1468 (1930)
T KOG0161|consen 1414 QELEDLQLDLER---------------------SRAAVAALEKK---QKRFEKLLAEWKKKLEKLQAEL-DAAQRELRQL 1468 (1930)
T ss_pred hHHHHHHHHHHH---------------------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 222222221111 11111111111 2333344444443221111000 0000000000
Q ss_pred cccchhhhhhhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 000239 1233 MDDIDNIEMYDNEVTVLDADDITSCFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLR 1312 (1804)
Q Consensus 1233 ~~~l~~~~~~~~~~~~~~~e~~~~~lr~~l~e~~~~~k~L~~~~~~l~~~~d~~i~~l~~~lq~~e~~~~~~~~e~e~lk 1312 (1804)
...+-.. ... ...+...+..+...++.+..++.++..+.++.- ..++.++...+.+..+...|+
T Consensus 1469 ~tel~kl-----------~~~-lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~----k~v~elek~~r~le~e~~elQ 1532 (1930)
T KOG0161|consen 1469 STELQKL-----------KNA-LEELLEQLEELRRENKNLSQEIEDLEEQKDEGG----KRVHELEKEKRRLEQEKEELQ 1532 (1930)
T ss_pred HHHHHHH-----------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 001 122334566666777777777776666555533 333446667777777777777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---h-cCCC----cchhhccccccccCCCCccCCC
Q 000239 1313 GKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNN---L-LELN----SVPELENLNRGFSQPESKVDGD 1384 (1804)
Q Consensus 1313 ~~l~~le~e~~~le~~l~~le~el~~l~~~~~~~~~el~~el~~~---l-l~~~----~~~ele~~~~~~~~~~~kl~~~ 1384 (1804)
..|..++.++...+.....++-++..+...+...+++-.-++..- + .... +...-..++.++...|.|++++
T Consensus 1533 ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~d 1612 (1930)
T KOG0161|consen 1533 AALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGD 1612 (1930)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcc
Confidence 777777777655555554444444444444333332222211110 0 0000 1112334556666667788988
Q ss_pred CcchhhhhccccchHHHHHHHHHHHHhhchhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000239 1385 DTTDHQKSLHGNRYHEAAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESD 1464 (1804)
Q Consensus 1385 ~~~l~~~~l~~~e~~~~~e~L~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~e~e~a~~~~~~Er~~~~~~l~~Le~~ 1464 (1804)
++.|... -+..++....+...+++.++..+.|+...........++...+..++..+..+..+.+.++..+..++..
T Consensus 1613 i~elE~~---ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Ra 1689 (1930)
T KOG0161|consen 1613 INELEIQ---LDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERA 1689 (1930)
T ss_pred hHHHHHH---HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776522 2455667777777888888888888877777777888888888777777778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000239 1465 VDALEHSCKELRLKVEDLE 1483 (1804)
Q Consensus 1465 i~~l~~~~~~l~~~l~~~~ 1483 (1804)
.+.++.++.++...+..+.
T Consensus 1690 rr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1690 RRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHhhHHHHHHHHHHHHHHh
Confidence 7777777777777777654
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=6.5e-20 Score=258.20 Aligned_cols=274 Identities=11% Similarity=0.106 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1425 VAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVEDLEAKEEKLKENEAKISLLYDRLS 1504 (1804)
Q Consensus 1425 ~l~~~~~~l~~~L~e~e~a~~~~~~Er~~~~~~l~~Le~~i~~l~~~~~~l~~~l~~~~~~e~~l~~~~~ei~~l~~~l~ 1504 (1804)
.+...+..++..+..+......++.+.+..+.+|..|+..+..+......+...+....+++..+..+..++..+...+.
T Consensus 826 ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~ 905 (1311)
T TIGR00606 826 QVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIK 905 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666555566667777777888888887777777777777777888888889999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhhhhhhcccchhh---cccccchHHHHHHHHHHHHHHH------------hhHHHHHHH
Q 000239 1505 RKEQEAEGLFLSPLQIRKLVDKISGIEIPYAESA---GDEEPESSAIVKKLFSIINSAT------------KLPHQIDLL 1569 (1804)
Q Consensus 1505 ~~~~~le~~~~~~~~~~~l~~ki~~l~~~~~e~~---~~~~~~~~~~~~kL~~~~~~~~------------~l~~ei~~l 1569 (1804)
.++..++.+.+++..+..-...+. ....... +.....+...++.|..+...|. .+...+..+
T Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~ 982 (1311)
T TIGR00606 906 DAKEQDSPLETFLEKDQQEKEELI---SSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTV 982 (1311)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 988888866444444333333333 2222222 3333334444444444444333 455555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh---HHHHHHHHHHHHhhhHHHHHHhhccCchhhhhh-----------
Q 000239 1570 EHGKQELQSILSTQTAEIEHLKGEVETHLRNKP---DLEKMKIEFAEFTFGLEKIVNMLESNEFVVNQK----------- 1635 (1804)
Q Consensus 1570 ~~ei~~l~~~i~~~~~ei~~l~~el~~~~~~~~---~n~~~r~~l~e~~~~le~~i~~l~~~~a~~d~~----------- 1635 (1804)
...+..++..+..+...+..++.++.++...++ +|+.|+.. ...+..+...|..|+..++..++.
T Consensus 983 ~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~-~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~ 1061 (1311)
T TIGR00606 983 NAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKR-ENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEE 1061 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 777888889999999999999999999877776 88888853 336667777887777776655433
Q ss_pred --------ccccccchHHHHHHHHHHHHHh-----hhhHHHHHhhcchhhhhhhhhhhhhHhHHHHHHH----hhccCCC
Q 000239 1636 --------SSGSKGLLAVLEKQIMTLHSDA-----ENSKSKVQELGNKLLESQKEVDDLTTKVDLLEES----LHGRRDQ 1698 (1804)
Q Consensus 1636 --------~~~~~gel~~l~~qi~~l~~E~-----k~~~~~~~~~~iklqt~~~~~~DL~~y~kALD~a----~~~~~~~ 1698 (1804)
++++.|++++++.+|..+..+| +|+...|++.||+++|++++++||++|++|||+| |+.|+..
T Consensus 1062 ~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 1141 (1311)
T TIGR00606 1062 NIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEE 1141 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999 4888889999999999999999999999999999 8899999
Q ss_pred chhh
Q 000239 1699 PEIV 1702 (1804)
Q Consensus 1699 ~~~~ 1702 (1804)
++-+
T Consensus 1142 ~n~~ 1145 (1311)
T TIGR00606 1142 INKI 1145 (1311)
T ss_pred HHHH
Confidence 8644
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.92 E-value=2e-18 Score=247.29 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhchhh-----
Q 000239 530 LAWLKESFYQAKDEANVLLDQLNRM---KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANKIS----- 601 (1804)
Q Consensus 530 i~~L~~~~~~~~~e~~~l~~el~~~---~~~~~~~~~~l~~~l~~~~~e~e~L~~el~~l~~e~~e~~~~~~~~~----- 601 (1804)
+..+...+..++.++..+..++..+ +..+...+..+...+..+..++..+...+..++.++..+........
T Consensus 429 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~ 508 (1164)
T TIGR02169 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3333333333333333333333333 33344555555555556666666666666656555544443321110
Q ss_pred ---------hhhhHHHHHHHHHhCCCCccchhh---------hccCCChhhHHHHHHHHHHhh
Q 000239 602 ---------LEKDHMVRVLLKESGTSMEDQDVA---------SQTSSDPTAIISKCIGKIREQ 646 (1804)
Q Consensus 602 ---------~~~~~l~~~l~el~~~~i~~y~~A---------~~~~vd~~~~a~~~~~~Lk~~ 646 (1804)
.....+.|.|.+++.++ ++|.+| .+++|+++.+|..||.||+.+
T Consensus 509 ~~~i~~~~~~~~~g~~g~l~dli~v~-~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~ 570 (1164)
T TIGR02169 509 GRAVEEVLKASIQGVHGTVAQLGSVG-ERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRR 570 (1164)
T ss_pred hHHHHHHHhcCCCCceecHHHhcCcC-HHHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHHhc
Confidence 00123446788888887 789888 556699999999999999976
No 7
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.92 E-value=2.5e-12 Score=172.61 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccc--------hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHH
Q 000239 1257 CFRKTAEGFQMRTKILTDTFEHFSVS--------IDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEA 1328 (1804)
Q Consensus 1257 ~lr~~l~e~~~~~k~L~~~~~~l~~~--------~d~~i~~l~~~lq~~e~~~~~~~~e~e~lk~~l~~le~e~~~le~~ 1328 (1804)
.+.+.+..+..+++-|-..|+.+... +..+-.++...+..++++..-+...++-++.+...+..+...++..
T Consensus 1110 ~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~ 1189 (1822)
T KOG4674|consen 1110 ELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRT 1189 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666555543222 1112334566666666666667777777777666666666666777
Q ss_pred HHHHHHHHHHHHH
Q 000239 1329 MVMLQNDATVLLS 1341 (1804)
Q Consensus 1329 l~~le~el~~l~~ 1341 (1804)
++.++..+.....
T Consensus 1190 i~dL~~sL~~~r~ 1202 (1822)
T KOG4674|consen 1190 IDDLQRSLTAERA 1202 (1822)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666554433
No 8
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.6e-16 Score=193.47 Aligned_cols=449 Identities=15% Similarity=0.202 Sum_probs=272.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH----
Q 000239 1071 VAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVL---------EGEKRIS---- 1137 (1804)
Q Consensus 1071 l~~l~~el~~~~~~~~~le~el~~l~~el~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~L---------e~~~~~l---- 1137 (1804)
+.+...++..+......+..++..+......+=.+-..+...+.++.+.+...+..+... .......
T Consensus 441 i~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k 520 (1200)
T KOG0964|consen 441 INETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELK 520 (1200)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 333333333333344444444444444433333334445555555555555555554422 2222211
Q ss_pred -------HHHHHHHHHHHHHHHHHHhhhhchh-----HhHHHHHHHHHHHH-----------------------------
Q 000239 1138 -------DQEVSALNSKLNACRDELAGTIGSL-----ESRSVELIGHLNDL----------------------------- 1176 (1804)
Q Consensus 1138 -------e~e~~~l~~~l~~l~~el~~~~~~~-----~~~~~~l~~~l~~l----------------------------- 1176 (1804)
-.++..+...+..|++..+|+..|+ +..++.+...++++
T Consensus 521 ~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp~~sdaiPl 600 (1200)
T KOG0964|consen 521 PNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDVEYPKDSDAIPL 600 (1200)
T ss_pred ccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhhccCCCCCCccch
Confidence 1556778888999999999999887 56788888888774
Q ss_pred -HHhHhhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHhhHhh-ccccc----cCCC-ccccccccccchhhhhhhhhhhhc
Q 000239 1177 -QMHMKDERLLSAVKSCFERKIEGLQNMELIVEDIRIGVVG-KGSAV----TEGN-SDVTKSFMDDIDNIEMYDNEVTVL 1249 (1804)
Q Consensus 1177 -~~~~~d~~~l~~~~~~~~kk~~~l~~~~~~l~~l~~~l~~-~~~~~----~e~~-~~~~~~l~~~l~~~~~~~~~~~~~ 1249 (1804)
..+-+++.+-.+++.+|++. .+|++|..++.. +.+.+ ++|| ++.+|.|+|||.+. .++++...
T Consensus 601 i~kl~y~p~fdka~k~Vfgkt--------ivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~--krsrLe~~ 670 (1200)
T KOG0964|consen 601 ISKLRYEPQFDKALKHVFGKT--------IVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQ--KRSRLELL 670 (1200)
T ss_pred HHHhCcchhhHHHHHHHhCce--------EEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhh--hhhHHHHH
Confidence 23346678888999999987 689999887744 55544 8888 89999999999998 45555433
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHH
Q 000239 1250 DADDITSCFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAM 1329 (1804)
Q Consensus 1250 ~~e~~~~~lr~~l~e~~~~~k~L~~~~~~l~~~~d~~i~~l~~~lq~~e~~~~~~~~e~e~lk~~l~~le~e~~~le~~l 1329 (1804)
. . +...+..+.+++..+..+...+. .+++.|++++..++..+..+..+...+..++..+..+..+...++.++
T Consensus 671 k--~-~~~~~~~~~~l~~~L~~~r~~i~----~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~ 743 (1200)
T KOG0964|consen 671 K--N-VNESRSELKELQESLDEVRNEIE----DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESL 743 (1200)
T ss_pred h--h-hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 3 2 23344445555555555555554 467788889999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhhh---cCCCcchhhccccccccCCCCccCCCCcchhhhhccccchHHHHH
Q 000239 1330 VMLQNDATVLLSACID---ATRELQFEVKNNL---LELNSVPELENLNRGFSQPESKVDGDDTTDHQKSLHGNRYHEAAE 1403 (1804)
Q Consensus 1330 ~~le~el~~l~~~~~~---~~~el~~el~~~l---l~~~~~~ele~~~~~~~~~~~kl~~~~~~l~~~~l~~~e~~~~~e 1403 (1804)
......+..+...... ....+.+++.++| |++.....+.+++..+. .++ .++.....
T Consensus 744 ~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~-----------~l~------~kl~~~~~ 806 (1200)
T KOG0964|consen 744 EPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEIN-----------KLS------VKLRALRE 806 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHH-----------HHH------HHHHHHHH
Confidence 7776655544443322 2333344444444 33333334544444443 111 12221111
Q ss_pred HHHHHHHhhchhhHHhhhhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000239 1404 NLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDT-----TTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLK 1478 (1804)
Q Consensus 1404 ~L~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~e~-----e~a~~~~~~Er~~~~~~l~~Le~~i~~l~~~~~~l~~~ 1478 (1804)
...........+. ..+..+|..++.+++..+.++ ...+.....+.+....++...-.++..++..+......
T Consensus 807 er~~~~~rk~~le---~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~ 883 (1200)
T KOG0964|consen 807 ERIDIETRKTALE---ANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAE 883 (1200)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1111111111111 145567778888887777542 22445555666666677777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH----HHHHHHHHhhhhhhcccchhhccc-ccchHHHHHHHH
Q 000239 1479 VEDLEAKEEKLKENEAKISLLYDRLSRKEQEAEGLFLSP----LQIRKLVDKISGIEIPYAESAGDE-EPESSAIVKKLF 1553 (1804)
Q Consensus 1479 l~~~~~~e~~l~~~~~ei~~l~~~l~~~~~~le~~~~~~----~~~~~l~~ki~~l~~~~~e~~~~~-~~~~~~~~~kL~ 1553 (1804)
+.+.+...++++.++.....- ...++++++++..+ ....++..+|+.|+..+.+++... .......+.+|.
T Consensus 884 ~~~~~~~lE~~~~lek~~~~~----~~~dKe~Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~ 959 (1200)
T KOG0964|consen 884 IKEIKKELEKAKNLEKEKKDN----INFDKELEKLVRRKHMLLKKREECCEKIRELGVLPEDAFEKYQDKKSKELMKKLH 959 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHhccCCHHHHHHHHH
Confidence 777776666666666655542 23345555444433 455679999999999999988222 222334444444
Q ss_pred HHHHHHH
Q 000239 1554 SIINSAT 1560 (1804)
Q Consensus 1554 ~~~~~~~ 1560 (1804)
....++.
T Consensus 960 ~~neelk 966 (1200)
T KOG0964|consen 960 RCNEELK 966 (1200)
T ss_pred HHHHHHh
Confidence 4444433
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=4.6e-14 Score=199.47 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhchhHhHHHHHHHHHHHHH-HhHhhHHHHHHHHHH
Q 000239 1119 ALLKAKNDISVLEGEKR-----ISDQEVSALNSKLNACRDELAGTIGSLESRSVELIGHLNDLQ-MHMKDERLLSAVKSC 1192 (1804)
Q Consensus 1119 ~l~~~~~~l~~Le~~~~-----~le~e~~~l~~~l~~l~~el~~~~~~~~~~~~~l~~~l~~l~-~~~~d~~~l~~~~~~ 1192 (1804)
.+......+..|+.++. .+..+...+..++..+....+...|.......++.....+|. ..|++ +...
T Consensus 1029 ~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~------a~~r 1102 (1311)
T TIGR00606 1029 ELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRD------AEEK 1102 (1311)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHH------HHHH
Confidence 33444444444444333 334566666666666666666666766666666666666652 33433 6677
Q ss_pred HHHHHhhhhhHHHHHHhHHhhH
Q 000239 1193 FERKIEGLQNMELIVEDIRIGV 1214 (1804)
Q Consensus 1193 ~~kk~~~l~~~~~~l~~l~~~l 1214 (1804)
|.+.+..+.+...++.||..|.
T Consensus 1103 yrka~i~~~~~~~~~~d~~~~~ 1124 (1311)
T TIGR00606 1103 YREMMIVMRTTELVNKDLDIYY 1124 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999886
No 10
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.88 E-value=3.8e-11 Score=161.55 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhhHHHH
Q 000239 1645 VLEKQIMTLHSDAENSKSKV 1664 (1804)
Q Consensus 1645 ~l~~qi~~l~~E~k~~~~~~ 1664 (1804)
+++..|.++..+|..-...+
T Consensus 1522 q~~~~I~rl~~eLe~~~~~~ 1541 (1822)
T KOG4674|consen 1522 QYQKEISRLKEELESTKEAK 1541 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888898988886444444
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.87 E-value=1.5e-14 Score=208.18 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=49.9
Q ss_pred hhcccCcc-----cCcccccchhhhHh--hHHHHHHHHHHHHHHHHHHHhhhcCCCCch--hhhh-hhHHHHHHHHHHHH
Q 000239 259 MVVYQGEL-----MDSSISGKISHVEQ--STYMLIEKYNQMLYEIYQLGQCLSKPDPER--RVQE-QFETVFAAARDELL 328 (1804)
Q Consensus 259 nvv~QGdv-----m~~~~~~~i~~lE~--~~~~~~ek~~~~~~eie~l~~~l~~~~~~~--~~~e-e~a~~~~~l~~el~ 328 (1804)
++|+||+| |+|.. .+..++. |++.|.+++......+..+...+.++...+ .... +.+.+|..+..++.
T Consensus 139 ~~~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~ 216 (1179)
T TIGR02168 139 SIIEQGKISEIIEAKPEE--RRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYK 216 (1179)
T ss_pred hheecccHHHHHcCCHHH--HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999 67762 2344444 889999999999999999988887776433 2223 66666666666654
Q ss_pred HHHH
Q 000239 329 NLKR 332 (1804)
Q Consensus 329 ~lk~ 332 (1804)
.++.
T Consensus 217 ~l~~ 220 (1179)
T TIGR02168 217 ELKA 220 (1179)
T ss_pred HHHH
Confidence 4444
No 12
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1e-13 Score=172.07 Aligned_cols=376 Identities=18% Similarity=0.209 Sum_probs=205.0
Q ss_pred hcccCcc-----cCcccccchhhhHh--hHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhHHHHHHHHHH------
Q 000239 260 VVYQGEL-----MDSSISGKISHVEQ--STYMLIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAAARDE------ 326 (1804)
Q Consensus 260 vv~QGdv-----m~~~~~~~i~~lE~--~~~~~~ek~~~~~~eie~l~~~l~~~~~~~~~~ee~a~~~~~l~~e------ 326 (1804)
+||||-| |+|.+| +..+|. ||..|..+...+..-++.-+..+.++.-. -+++..=+|..++.+
T Consensus 144 LIMQGrITkVLNMKp~EI--LsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~l--L~eeI~P~l~KLR~Ers~~lE 219 (1174)
T KOG0933|consen 144 LIMQGRITKVLNMKPSEI--LSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTL--LREEILPRLEKLREERSQYLE 219 (1174)
T ss_pred EEecccchhhhcCCcHHH--HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccHHHHHHHHHHHHHHH
Confidence 5999999 898843 344455 99999888888887777666666655421 122222333334443
Q ss_pred -------HHHHHHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHH-h
Q 000239 327 -------LLNLKRREEESVENLSHLENE--NRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVT-K 396 (1804)
Q Consensus 327 -------l~~lk~~~~~~~e~l~~l~~E--~~~l~~el~~~~~~l~~l~~el~~~~~el~~l~~~l~~~~eki~~~~~-k 396 (1804)
+..+.+ +-.+..|+..+ ...+..++...+..+..+...+.....++..+++++..+......-.. .
T Consensus 220 ~q~~~~dle~l~R----~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~ 295 (1174)
T KOG0933|consen 220 YQKINRDLERLSR----ICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGE 295 (1174)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 222222 22344444333 455667777777777777777777777777777777766554332211 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHH---HHHHHHHHHHHHHHhHHHHHH
Q 000239 397 GKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAE--------LSKEEFIK---TENLVASLQETLQQSNLMLEK 465 (1804)
Q Consensus 397 ~~~l~~~~~~lk~eiee~~~ele~~~~eie~~~~~l~~~e--------~l~~el~~---~k~~~~~l~~~~~~k~~~l~~ 465 (1804)
.+.|..+...+...+......+.-....|......++.+. .|...... ...--+.+.....+....+..
T Consensus 296 ~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~ 375 (1174)
T KOG0933|consen 296 VKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEK 375 (1174)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2455555555555555555555555444444444443333 12221111 112223344555555555555
Q ss_pred HHHHHhcCC----c---chhhhhhhHHHHHHHHHHHHHHhhhhhhhHhhhHHHhhhcCCCCCCcccchHHHHHHHHHHHH
Q 000239 466 SEEVLAQID----I---PEELQSLDMVERIKWLVSERHELKGISLDFYKLKDAVSLIDVPETGSFSDLESRLAWLKESFY 538 (1804)
Q Consensus 466 ~e~~l~~~~----~---~~~~~~~e~~ek~~~L~e~r~el~~~~~e~~~l~e~~~~~~~~~~~~~~ele~~i~~L~~~~~ 538 (1804)
.+...+.+. . ........+..-...+.....++....-.+..+..++...+. .......+-......+.
T Consensus 376 ~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~----e~~t~~~~~~~~~~~ld 451 (1174)
T KOG0933|consen 376 AEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREG----ELATASAEYVKDIEELD 451 (1174)
T ss_pred HHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HhhhhhHHHHHHHHHHH
Confidence 555444433 1 122233344444444445555555555555555555553322 12222233233334444
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHH
Q 000239 539 QAKDEANVLLDQLNRM------KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANKISLEKDHMVRVLL 612 (1804)
Q Consensus 539 ~~~~e~~~l~~el~~~------~~~~~~~~~~l~~~l~~~~~e~e~L~~el~~l~~e~~e~~~~~~~~~~~~~~l~~~l~ 612 (1804)
..+.+++.++..+..+ ...+......+.....++..+.+.|-..+......|..= .-++..+.+.|.|+
T Consensus 452 ~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP-----~~nfdrs~V~G~Va 526 (1174)
T KOG0933|consen 452 ALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDP-----EPNFDRSKVKGLVA 526 (1174)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC-----CccchHHHHHHHHH
Confidence 4444555555544443 445666666666666666666666655555444444211 12222456779999
Q ss_pred HHhCCCCccchhhhcc---------CCChhhHHHHHHH--HHHhhcc--CCCC
Q 000239 613 KESGTSMEDQDVASQT---------SSDPTAIISKCIG--KIREQTC--ASSD 652 (1804)
Q Consensus 613 el~~~~i~~y~~A~~~---------~vd~~~~a~~~~~--~Lk~~~~--~l~~ 652 (1804)
.|..++=..|.+|.++ +|||..++-..++ .|+++.| ||++
T Consensus 527 ~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~rRvTiIPLnK 579 (1174)
T KOG0933|consen 527 KLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNK 579 (1174)
T ss_pred HHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhcccccceeEEEechh
Confidence 9998862358888444 4999999999988 8888876 8884
No 13
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.83 E-value=4.7e-22 Score=264.30 Aligned_cols=571 Identities=19% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 897 VAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAV 976 (1804)
Q Consensus 897 ~le~~i~~L~~e~~~le~~~~ele~~l~~~~~el~~~~~~l~el~~~i~~le~~l~~l~~ei~~l~~e~e~le~~~~~l~ 976 (1804)
.+...+..+...+.+.+.....+......+..++..+...+.+.......+...+..+..++..+...+++.......+.
T Consensus 212 kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~ 291 (859)
T PF01576_consen 212 KLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELE 291 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 33333333333333333333333333444444555566666666666777777888888888889888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 977 VELEQVREEFASQTSKLTEAYKT-IKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYT 1055 (1804)
Q Consensus 977 ~ele~l~~el~~l~~~l~e~~~~-i~~Le~~l~~~e~~l~~l~~e~~~~~~~~~~~le~ele~l~~el~~l~~~l~~~~~ 1055 (1804)
..+..+..++..|+.++...... ...++.....+...+..+... .......+..+++....|..++.++...+.....
T Consensus 292 ~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~-le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~ 370 (859)
T PF01576_consen 292 RQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQ-LEEANAKVSSLEKTKKRLQGELEDLTSELEKAQA 370 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998754443 667888888888888887777 3566666777777777777777777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 000239 1056 TIKSLEDALSQVEANVAVL-------TEQNNVLQVGKTTLENELQMLKDEAGSQAV-------KLADAHTTIKSMEDALL 1121 (1804)
Q Consensus 1056 ~i~~Le~~l~~le~~l~~l-------~~el~~~~~~~~~le~el~~l~~el~~~~~-------~l~~~~~~l~~l~~~l~ 1121 (1804)
....++.+...+...+..+ ...+.........+..++..+...+..... ....+..++..+...+.
T Consensus 371 ~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~ 450 (859)
T PF01576_consen 371 AAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLD 450 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 6666665555554433333 333344444444444444444444433333 33445555555656666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHh---
Q 000239 1122 KAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSLESRSVELIGHLNDLQMHMKDERLLSAVKSCFERKIE--- 1198 (1804)
Q Consensus 1122 ~~~~~l~~Le~~~~~le~e~~~l~~~l~~l~~el~~~~~~~~~~~~~l~~~l~~l~~~~~d~~~l~~~~~~~~kk~~--- 1198 (1804)
.....+..|+...+.++.+...+...+..+...+... .....++.- .+.+++..|.+.+.
T Consensus 451 ~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~----E~~~lRl~~-------------el~~~r~e~er~l~eKe 513 (859)
T PF01576_consen 451 DAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAE----EQKKLRLQV-------------ELQQLRQEIERELQEKE 513 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-------------HHHHHHHHHHHHHHhhh
Confidence 6666666677666666666665555554433322222 111111111 23344445554442
Q ss_pred -----hhhhHHHHHHhHHhhHhh--ccccccCCCccccccccccchhhhhhhhhhhhcCcchhhHHHHHHHHHHHHHHHH
Q 000239 1199 -----GLQNMELIVEDIRIGVVG--KGSAVTEGNSDVTKSFMDDIDNIEMYDNEVTVLDADDITSCFRKTAEGFQMRTKI 1271 (1804)
Q Consensus 1199 -----~l~~~~~~l~~l~~~l~~--~~~~~~e~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~lr~~l~e~~~~~k~ 1271 (1804)
.++++...+.+|...++. +++. ..+..++.|.+.++++++...+++....+ +.+.++.++.+++.
T Consensus 514 eE~E~~Rr~~qr~l~~le~~LE~E~k~r~---~~~r~kkKLE~~l~eLe~~ld~~n~~~~e-----~~k~~kk~q~qlkd 585 (859)
T PF01576_consen 514 EEFEETRRNHQRQLESLEAELEEERKERA---EALREKKKLESDLNELEIQLDHANRANEE-----AQKQLKKLQAQLKD 585 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHhhHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHhHHH-----HHHHHHHHHHHHHH
Confidence 257777788888887754 3322 33677889999999998888877766644 45778889999999
Q ss_pred HHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1272 LTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQ 1351 (1804)
Q Consensus 1272 L~~~~~~l~~~~d~~i~~l~~~lq~~e~~~~~~~~e~e~lk~~l~~le~e~~~le~~l~~le~el~~l~~~~~~~~~el~ 1351 (1804)
++..+++.....+. +...+..+++.+..+..+++.++..+..+.+.+..++.++..+...+..+..
T Consensus 586 lq~~lee~~~~~~~----~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~---------- 651 (859)
T PF01576_consen 586 LQRELEEAQRAREE----LREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTS---------- 651 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 99988877766655 5666677888999999999999999999999999999988887766654322
Q ss_pred HHHhhhhcCCCcchhhccccccccCCCCccCCCCcchhhhhcc---------ccchHH---HHHHHHHHHHhhchhhHHh
Q 000239 1352 FEVKNNLLELNSVPELENLNRGFSQPESKVDGDDTTDHQKSLH---------GNRYHE---AAENLLFSARKAQPLAKLF 1419 (1804)
Q Consensus 1352 ~el~~~ll~~~~~~ele~~~~~~~~~~~kl~~~~~~l~~~~l~---------~~e~~~---~~e~L~~~~~~~~~~~~~~ 1419 (1804)
.+..+...+.+++++++.|. ..|. .+.+.+ .+..+...+...+....++
T Consensus 652 ------------------~~~~l~~~kr~le~~i~~l~-~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~l 712 (859)
T PF01576_consen 652 ------------------QNSSLSEEKRKLEAEIQQLE-EELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHL 712 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------hhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444556666665553 2321 122222 3444556667777778888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1420 EMTSTVAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVEDLEAKEEKLKENEAKISLL 1499 (1804)
Q Consensus 1420 ~~~~~~l~~~~~~l~~~L~e~e~a~~~~~~Er~~~~~~l~~Le~~i~~l~~~~~~l~~~l~~~~~~e~~l~~~~~ei~~l 1499 (1804)
...+..|..++++|+.+|.+++...... .+..|..|+..|++|+.++..-.+...... ..++.....+..+
T Consensus 713 e~~k~~LE~q~keLq~rl~e~E~~~~~~------~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~---k~~rk~er~~kEl 783 (859)
T PF01576_consen 713 EKEKKALERQVKELQARLEEAEQSALKG------GKKQIAKLEARIRELEEELESEQRRRAEAQ---KQLRKLERRVKEL 783 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc------cccHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHH
Confidence 8899999999999999999988765544 577899999999999999888888777753 6667777777777
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHhhhhhhcccchhh
Q 000239 1500 YDRLSRKEQEAEGLFLSPLQIRKLVDKISGIEIPYAESA 1538 (1804)
Q Consensus 1500 ~~~l~~~~~~le~~~~~~~~~~~l~~ki~~l~~~~~e~~ 1538 (1804)
...+..-.+... .-...+..+..+++.+...+.++.
T Consensus 784 ~~q~ee~~k~~~---~~~d~~~kl~~k~k~~krq~eeaE 819 (859)
T PF01576_consen 784 QFQVEEERKNAE---RLQDLVDKLQLKLKQLKRQLEEAE 819 (859)
T ss_dssp ---------------------------------------
T ss_pred HHHHHhHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHH
Confidence 666655332212 123444566666665555555543
No 14
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.81 E-value=1.3e-09 Score=142.78 Aligned_cols=275 Identities=13% Similarity=0.133 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000239 1435 KKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVEDLEAKEEKLKENEAKISLLYDRLSRKEQEAEGLF 1514 (1804)
Q Consensus 1435 ~~L~e~e~a~~~~~~Er~~~~~~l~~Le~~i~~l~~~~~~l~~~l~~~~~~e~~l~~~~~ei~~l~~~l~~~~~~le~~~ 1514 (1804)
..+.......+.++.+.......++.+..-...+......+...++...+++..+......+..+...+..+...+..+.
T Consensus 833 ~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~ 912 (1294)
T KOG0962|consen 833 ESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLK 912 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchh
Confidence 33333333445555666667777888888888888888888888999888888888888888887777766555433222
Q ss_pred CCHHHHHHHHHhhhhhhcccchhhcccccchHHHHHHHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHHHHH
Q 000239 1515 LSPLQIRKLVDKISGIEIPYAESAGDEEPESSAIVKKLFSIINSATKLPHQIDLL---------EHGKQELQSILSTQTA 1585 (1804)
Q Consensus 1515 ~~~~~~~~l~~ki~~l~~~~~e~~~~~~~~~~~~~~kL~~~~~~~~~l~~ei~~l---------~~ei~~l~~~i~~~~~ 1585 (1804)
....+..+...+.. ..- .......+.....++.+++.|.........+ ...+..++..++....
T Consensus 913 ~~l~e~~s~~e~~k---~~~----~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~ 985 (1294)
T KOG0962|consen 913 VELEEAQSEKEELK---NER----NTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDN 985 (1294)
T ss_pred hhHHHHHHHHHHHH---HHh----hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Confidence 22222111111111 100 0122233444455555555555444443333 4556667777778888
Q ss_pred HHHHHHHHHHhhhhchh---HHHHHHHHHHHHhhhHHHHHHhhccCchhhhhh-------------------ccccccch
Q 000239 1586 EIEHLKGEVETHLRNKP---DLEKMKIEFAEFTFGLEKIVNMLESNEFVVNQK-------------------SSGSKGLL 1643 (1804)
Q Consensus 1586 ei~~l~~el~~~~~~~~---~n~~~r~~l~e~~~~le~~i~~l~~~~a~~d~~-------------------~~~~~gel 1643 (1804)
.+....+.+.+.....+ +|..++.... ....+.+++..|+.+....++. ..++.|+|
T Consensus 986 ~~~~~~~~l~~~~~~er~l~dnl~~~~l~~-q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ 1064 (1294)
T KOG0962|consen 986 EVNEIKQKIRNQYQRERNLKDNLTLRNLER-KLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEM 1064 (1294)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 88888877777754444 8888875555 6777778887777664333311 67899999
Q ss_pred HHHHHHHHHHHHHh-----hhhHHHHHhhcchhhhhhhhhhhhhHhHHHHHHH----hhccCCCch-hh-hhhhhcccCC
Q 000239 1644 AVLEKQIMTLHSDA-----ENSKSKVQELGNKLLESQKEVDDLTTKVDLLEES----LHGRRDQPE-IV-QERSIFEASS 1712 (1804)
Q Consensus 1644 ~~l~~qi~~l~~E~-----k~~~~~~~~~~iklqt~~~~~~DL~~y~kALD~a----~~~~~~~~~-~~-~~~~~~~~~~ 1712 (1804)
++++++|.++..|| +|....|+.+||+++|+.+++.||++|.+|||.| |..|+--++ ++ .-|. +
T Consensus 1065 ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeeiN~iI~elW~-----~ 1139 (1294)
T KOG0962|consen 1065 KQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEINRIIRELWR-----K 1139 (1294)
T ss_pred HHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h
Confidence 99999999999999 4888889999999999999999999999999998 888887774 33 4454 4
Q ss_pred CCCCcccccc
Q 000239 1713 LPTGSEISEV 1722 (1804)
Q Consensus 1713 ~~~~~~~~~~ 1722 (1804)
.-.|-.|-.|
T Consensus 1140 tYrG~Did~I 1149 (1294)
T KOG0962|consen 1140 TYRGTDIDYI 1149 (1294)
T ss_pred ccCCCCcceE
Confidence 4455555444
No 15
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.1e-11 Score=153.56 Aligned_cols=216 Identities=11% Similarity=0.171 Sum_probs=108.0
Q ss_pred HHHHHHHHhCCCCccchhh---------hccCCChhhHHHHHHHHHHhh--c--c--CCCCCC------CcChH------
Q 000239 607 MVRVLLKESGTSMEDQDVA---------SQTSSDPTAIISKCIGKIREQ--T--C--ASSDTS------GADSE------ 659 (1804)
Q Consensus 607 l~~~l~el~~~~i~~y~~A---------~~~~vd~~~~a~~~~~~Lk~~--~--~--~l~~~~------~~~~e------ 659 (1804)
..|+|.+|..|+ ..|-+| -++|||++++|...+..+... | | ||++-. |.++.
T Consensus 524 v~G~v~eL~~v~-~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp~~sdaiPli~ 602 (1200)
T KOG0964|consen 524 VFGTVYELIKVP-NKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDVEYPKDSDAIPLIS 602 (1200)
T ss_pred cceehhhhhcCC-HHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhhccCCCCCCccchHH
Confidence 348888888886 667666 566699999999998888874 2 3 888411 11111
Q ss_pred ------HHHHh-----hhhh-------------------HhhHHHHHHHHHHHHHHHH-----HHHHHHHH--HHHHHHH
Q 000239 660 ------MLQTM-----QSLL-------------------YVSYQELILCQQILEEDAL-----VRLQLNDL--SNKLRVA 702 (1804)
Q Consensus 660 ------~~~~l-----~~~l-------------------~~l~~E~~~l~~~le~~~~-----~~~~~~~l--~~~~~~l 702 (1804)
.|.++ +.++ +|++|+ .+.+.|. ......+| -..+...
T Consensus 603 kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GD------qvskkG~lTgGy~D~krsrLe~~k~~~~~ 676 (1200)
T KOG0964|consen 603 KLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGD------QVSKKGVLTGGYEDQKRSRLELLKNVNES 676 (1200)
T ss_pred HhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccc------eecccCCccccchhhhhhHHHHHhhhHHH
Confidence 24444 2333 233333 1111111 11111111 1334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH-------HHHHHHHHHHH-------HHHHHHHH
Q 000239 703 SEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRE-------NLKLQLDEKNS-------EIEKLKLN 768 (1804)
Q Consensus 703 ~~e~~~l~~e~~~l~~el~~~e~k~~~l~e~l~~~~~k~k~l~~e~~-------~l~~~ieel~~-------ele~l~~e 768 (1804)
..++..+.+.++.+..++.....++..+..++.....+...-..... .++.+...++. .|+.++..
T Consensus 677 ~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~ 756 (1200)
T KOG0964|consen 677 RSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTS 756 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHH
Confidence 55566666666666666666666666665555544443333222222 22222222222 22223333
Q ss_pred HHHHHHHHHHHHHHHHHh------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000239 769 LQEQESTISECRDQINRL------SNDLDCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVD 829 (1804)
Q Consensus 769 l~~~e~~~~el~~~l~~l------~~~~e~~~~Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~~~i~ 829 (1804)
+...+.....++.++..- ..+.+++..|..+|..+......+...-.+++..+..+...++
T Consensus 757 l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~ 823 (1200)
T KOG0964|consen 757 LHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLN 823 (1200)
T ss_pred HHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333332211 1244566777778877777776666555555555555554433
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.78 E-value=2.8e-10 Score=163.56 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=9.6
Q ss_pred cCCC-ccccccccccc
Q 000239 1222 TEGN-SDVTKSFMDDI 1236 (1804)
Q Consensus 1222 ~e~~-~~~~~~l~~~l 1236 (1804)
++|+ +...|.+.||.
T Consensus 644 ldG~~~~~~G~~tgG~ 659 (1164)
T TIGR02169 644 LEGELFEKSGAMTGGS 659 (1164)
T ss_pred eCceeEcCCcCccCCC
Confidence 6666 45556777775
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.78 E-value=1e-10 Score=163.79 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000239 1289 ALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDAT 1337 (1804)
Q Consensus 1289 ~l~~~lq~~e~~~~~~~~e~e~lk~~l~~le~e~~~le~~l~~le~el~ 1337 (1804)
.+...+..+......+...++.++.++..+......+...+..+...+.
T Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1163)
T COG1196 699 SLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555554444444444444444444433
No 18
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.8e-11 Score=154.45 Aligned_cols=260 Identities=17% Similarity=0.215 Sum_probs=153.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhch
Q 000239 523 FSDLESRLAWLKESFYQAKDEANVLLDQLNRM---KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANK 599 (1804)
Q Consensus 523 ~~ele~~i~~L~~~~~~~~~e~~~l~~el~~~---~~~~~~~~~~l~~~l~~~~~e~e~L~~el~~l~~e~~e~~~~~~~ 599 (1804)
..+++.++.|+..++..+...+..|..-+... ...+....+.+.........+-..+..+|.....++..+......
T Consensus 404 ~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e 483 (1141)
T KOG0018|consen 404 RAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHE 483 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 55678888888888877777776666555444 445555666666666666666666777777776666555553333
Q ss_pred h-------------hhhhhHHHHHHHHHhCCCCccchhh---------hccCCChhhHHHHHHHHHHhhc----c--CCC
Q 000239 600 I-------------SLEKDHMVRVLLKESGTSMEDQDVA---------SQTSSDPTAIISKCIGKIREQT----C--ASS 651 (1804)
Q Consensus 600 ~-------------~~~~~~l~~~l~el~~~~i~~y~~A---------~~~~vd~~~~a~~~~~~Lk~~~----~--~l~ 651 (1804)
. ..-++.++|-|.+||...-..|.+| +.|+|||..+|..||.|||.+- | ||+
T Consensus 484 ~sR~~~~~eave~lKr~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~TFlPld 563 (1141)
T KOG0018|consen 484 GSRRSRKQEAVEALKRLFPGVYGRVIDLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMTFLPLD 563 (1141)
T ss_pred cHHHHHHHHHHHHHHHhCCCccchhhhcccccHHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCccccchh
Confidence 2 2222333366666665432358888 7777999999999999999972 2 444
Q ss_pred --------C----CC-------CcChHH-HHHh-----hhhh---------------------HhhHHHHHHHHHHHHHH
Q 000239 652 --------D----TS-------GADSEM-LQTM-----QSLL---------------------YVSYQELILCQQILEED 685 (1804)
Q Consensus 652 --------~----~~-------~~~~e~-~~~l-----~~~l---------------------~~l~~E~~~l~~~le~~ 685 (1804)
. ++ ++.|+. ++.+ +++| ++++|- ++-++
T Consensus 564 ~i~v~~~~e~lr~~~g~rlv~Dvi~ye~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r~k~valdGt------l~~ks 637 (1141)
T KOG0018|consen 564 SIRVKPVNEKLRELGGVRLVIDVINYEPEYEKAVQFACGNALVCDSVEDARDLAYGGEIRFKVVALDGT------LIHKS 637 (1141)
T ss_pred hhhcCcccccccCcCCeEEEEEecCCCHHHHHHHHHHhccceecCCHHHHHHhhhcccccceEEEeeee------EEecc
Confidence 1 00 222221 2221 3333 333332 11122
Q ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 000239 686 AL----------VRLQLNDLSNKLRVASEEFGALKE---EKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLK 752 (1804)
Q Consensus 686 ~~----------~~~~~~~l~~~~~~l~~e~~~l~~---e~~~l~~el~~~e~k~~~l~e~l~~~~~k~k~l~~e~~~l~ 752 (1804)
|. +...++.|.....++..++..+.. +.......+..++.++..++.++............++..+.
T Consensus 638 GlmsGG~s~~~wdek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~ 717 (1141)
T KOG0018|consen 638 GLMSGGSSGAKWDEKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTE 717 (1141)
T ss_pred ceecCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 345566666666666666666655 22344555566666666666666665554444445566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 000239 753 LQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSN 788 (1804)
Q Consensus 753 ~~ieel~~ele~l~~el~~~e~~~~el~~~l~~l~~ 788 (1804)
..+.++..+|-.++..+...+....+++.++..+..
T Consensus 718 ~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved 753 (1141)
T KOG0018|consen 718 SEIDEFGPEISEIKRKLQNREGEMKELEERMNKVED 753 (1141)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666655543
No 19
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.75 E-value=1.1e-09 Score=158.10 Aligned_cols=99 Identities=22% Similarity=0.170 Sum_probs=63.5
Q ss_pred HhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHhhhhcCCCcch-h-------hccc
Q 000239 1306 QCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLL---SACIDATR----ELQFEVKNNLLELNSVP-E-------LENL 1370 (1804)
Q Consensus 1306 ~e~e~lk~~l~~le~e~~~le~~l~~le~el~~l~---~~~~~~~~----el~~el~~~ll~~~~~~-e-------le~~ 1370 (1804)
.+++++..++.++..++..+...+..+...+...| ...+..+. .+|..+|..|+.+|.+. . +..|
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEAELRLTDPEDLLEAG 1072 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccccC
Confidence 67778888888888888888888888888777777 55555444 44445555555566543 2 3344
Q ss_pred cccccCCCCccCCCCcchhhhhccccchHHHHHHHHHHH
Q 000239 1371 NRGFSQPESKVDGDDTTDHQKSLHGNRYHEAAENLLFSA 1409 (1804)
Q Consensus 1371 ~~~~~~~~~kl~~~~~~l~~~~l~~~e~~~~~e~L~~~~ 1409 (1804)
......||++.... ...|++++...++-.+..+.
T Consensus 1073 ~~~~~~~~~~~~~~-----~~~lS~g~~~~~~l~~~~~~ 1106 (1179)
T TIGR02168 1073 IEIFAQPPGKKNQN-----LSLLSGGEKALTALALLFAI 1106 (1179)
T ss_pred ceEEEeCCCCcccc-----ccccCccHHHHHHHHHHHHH
Confidence 55556677665432 24567888777666665543
No 20
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.4e-10 Score=142.74 Aligned_cols=106 Identities=14% Similarity=0.041 Sum_probs=83.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHhhhHHHHHHhhccCchh
Q 000239 1552 LFSIINSATKLPHQIDLLEHGKQELQSILSTQTAEIEHLKGEVETHLRNKPDLEKMKIEFAEFTFGLEKIVNMLESNEFV 1631 (1804)
Q Consensus 1552 L~~~~~~~~~l~~ei~~l~~ei~~l~~~i~~~~~ei~~l~~el~~~~~~~~~n~~~r~~l~e~~~~le~~i~~l~~~~a~ 1631 (1804)
|...-..+..+..+|..+....+....+......++.++.+++.....+..++......+...++||.++...||.+|..
T Consensus 873 l~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~ 952 (1174)
T KOG0933|consen 873 LKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTD 952 (1174)
T ss_pred HHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCc
Confidence 33344455566677777778888888999999999999999999999988899999999999999999999999999999
Q ss_pred hhhhccc---cccchHHHHHHHHHHHHHh
Q 000239 1632 VNQKSSG---SKGLLAVLEKQIMTLHSDA 1657 (1804)
Q Consensus 1632 ~d~~~~~---~~gel~~l~~qi~~l~~E~ 1657 (1804)
|||+... -...++.|+..+.++..-.
T Consensus 953 yDf~~~~p~~are~l~~Lq~k~~~l~k~v 981 (1174)
T KOG0933|consen 953 YDFESYDPHEAREELKKLQEKKEKLEKTV 981 (1174)
T ss_pred cccccCCHhHHHHHHHHhhHHHHHHHhhc
Confidence 9988442 2344555555555444433
No 21
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.4e-08 Score=127.62 Aligned_cols=224 Identities=17% Similarity=0.270 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH---
Q 000239 691 QLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKL--- 767 (1804)
Q Consensus 691 ~~~~l~~~~~~l~~e~~~l~~e~~~l~~el~~~e~k~~~l~e~l~~~~~k~k~l~~e~~~l~~~ieel~~ele~l~~--- 767 (1804)
....+...+..+......+......+...+..+..++..++..++......+.+...+..++..|.+++........
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~ 858 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKK 858 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHH
Confidence 45555566666666666666666666666666666777776666666665566655666666666666655332222
Q ss_pred HHHHHHHHHHHHHHHHHHhHh---hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcccc---ccccc
Q 000239 768 NLQEQESTISECRDQINRLSN---DLDCIRKMEADLIAMKDERNQ-FEHFLLESNNMLQKVLETVDRIILPV---NSVFK 840 (1804)
Q Consensus 768 el~~~e~~~~el~~~l~~l~~---~~e~~~~Le~ei~~l~~~~~e-~e~~L~e~e~~l~~l~~~i~el~~~~---~~~~~ 840 (1804)
.+..++..++.++.+++++.. ...++..++..|..+-...-. ....+......+..+...|+.+.... +..+.
T Consensus 859 ~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~ 938 (1293)
T KOG0996|consen 859 RLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIA 938 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHH
Confidence 223344445555555555521 113334444444433322211 11233333333333333333322110 01112
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 841 EPLEKVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEV 914 (1804)
Q Consensus 841 e~~~k~~~l~~~~~ele~~l~~le~ei~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~~L~~e~~~le~ 914 (1804)
.....+..+...+.....++..+.++...+.....++..++.+...-+..+..++..+...+..+.....++..
T Consensus 939 k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~ 1012 (1293)
T KOG0996|consen 939 KAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKA 1012 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233344444444444444444444444444444444444444444444444444444444444444444443
No 22
>PRK02224 chromosome segregation protein; Provisional
Probab=99.64 E-value=1.1e-08 Score=141.72 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=12.3
Q ss_pred HHhhhhhHhhHHHHHHHHH
Q 000239 662 QTMQSLLYVSYQELILCQQ 680 (1804)
Q Consensus 662 ~~l~~~l~~l~~E~~~l~~ 680 (1804)
..+.+++++.+|++..+..
T Consensus 127 ~~f~~~~~i~Qge~~~~l~ 145 (880)
T PRK02224 127 EAFVNCAYVRQGEVNKLIN 145 (880)
T ss_pred HHhcceeEeeccChHHHHc
Confidence 3445666778888766654
No 23
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.60 E-value=8.4e-08 Score=124.28 Aligned_cols=78 Identities=27% Similarity=0.365 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 749 ENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLD----CIRKMEADLIAMKDERNQFEHFLLESNNMLQKV 824 (1804)
Q Consensus 749 ~~l~~~ieel~~ele~l~~el~~~e~~~~el~~~l~~l~~~~e----~~~~Le~ei~~l~~~~~e~e~~L~e~e~~l~~l 824 (1804)
..+..++.....++..++..+..+.....+++..++.+...+. +...|++++..+..++++....+......+..+
T Consensus 290 d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~ 369 (775)
T PF10174_consen 290 DRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKL 369 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555556665555555566555555543332 234566666666666655555555555444444
Q ss_pred HH
Q 000239 825 LE 826 (1804)
Q Consensus 825 ~~ 826 (1804)
..
T Consensus 370 qe 371 (775)
T PF10174_consen 370 QE 371 (775)
T ss_pred HH
Confidence 43
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.53 E-value=1.4e-06 Score=113.29 Aligned_cols=135 Identities=17% Similarity=0.296 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 689 RLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLN 768 (1804)
Q Consensus 689 ~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~el~~~e~k~~~l~e~l~~~~~k~k~l~~e~~~l~~~ieel~~ele~l~~e 768 (1804)
...++.+..++..-..++..+...+..+.........++..+++.+..... +...|...++.+..+++.....
T Consensus 286 K~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~-------~~~~Lqsdve~Lr~rle~k~~~ 358 (775)
T PF10174_consen 286 KSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQ-------EAEMLQSDVEALRFRLEEKNSQ 358 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHH
Confidence 334666666666666677777777776666666667777777777766553 4555555666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000239 769 LQEQESTISECRDQINRLSNDLD----CIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDR 830 (1804)
Q Consensus 769 l~~~e~~~~el~~~l~~l~~~~e----~~~~Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~~~i~e 830 (1804)
+..+...+..+..++..+..++. .+...+.+|..+...++.++..+.+.+..+......+..
T Consensus 359 l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~ 424 (775)
T PF10174_consen 359 LEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS 424 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555555444443 334556677777888888888888877777777766663
No 25
>PRK03918 chromosome segregation protein; Provisional
Probab=99.52 E-value=3e-07 Score=127.85 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=13.3
Q ss_pred ccccCCCCCchhHHHHHh
Q 000239 84 VETDVGSGSNHELERLRN 101 (1804)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~ 101 (1804)
+.|++|+|=+-++.+..-
T Consensus 28 i~G~nG~GKStil~ai~~ 45 (880)
T PRK03918 28 IIGQNGSGKSSILEAILV 45 (880)
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 678899998877666543
No 26
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.48 E-value=5e-15 Score=197.66 Aligned_cols=374 Identities=20% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 000239 746 QDRENLKLQLDEKNSEIEKLKLNLQ-------EQESTISECRDQINRLSNDLDCI----RKMEADLIAMKDERNQFEHFL 814 (1804)
Q Consensus 746 ~e~~~l~~~ieel~~ele~l~~el~-------~~e~~~~el~~~l~~l~~~~e~~----~~Le~ei~~l~~~~~e~e~~L 814 (1804)
+...+|..+++++..+++....... .++..+.++...+..+....+.. +.+..++..++..++++...+
T Consensus 349 K~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~ 428 (859)
T PF01576_consen 349 KTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQL 428 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Confidence 3444555555555555555444433 34444455555444444333322 456777777777777777776
Q ss_pred HHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 815 LESNNMLQKVLETVDRIILPVNSVFKEPLEKVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDA 894 (1804)
Q Consensus 815 ~e~e~~l~~l~~~i~el~~~~~~~~~e~~~k~~~l~~~~~ele~~l~~le~ei~~l~~~l~~l~~el~el~~e~~~le~e 894 (1804)
..++.....+...|.++ ...+...+..+..+...+..++.++..+...+.++...+......+..+.-+
T Consensus 429 e~lere~k~L~~El~dl-----------~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~e 497 (859)
T PF01576_consen 429 EELERENKQLQDELEDL-----------TSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVE 497 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccc-----------hhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665554443 3445566677778888888888888888888888888887777777777777
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 895 LSVAEDKITQ-LADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGA 973 (1804)
Q Consensus 895 l~~le~~i~~-L~~e~~~le~~~~ele~~l~~~~~el~~~~~~l~el~~~i~~le~~l~~l~~ei~~l~~e~e~le~~~~ 973 (1804)
+..++..+.. +...-..++..+..+...+..+...+..-......+.. ....++.+|..+...++.......
T Consensus 498 l~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r-------~kkKLE~~l~eLe~~ld~~n~~~~ 570 (859)
T PF01576_consen 498 LQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALR-------EKKKLESDLNELEIQLDHANRANE 570 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHhHH
Confidence 7777766644 33333334444444444444444443322222222222 233344455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 974 AAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEA 1053 (1804)
Q Consensus 974 ~l~~ele~l~~el~~l~~~l~e~~~~i~~Le~~l~~~e~~l~~l~~e~~~~~~~~~~~le~ele~l~~el~~l~~~l~~~ 1053 (1804)
.+...+.++..++..++..+.+.......+...+..+...+..+..++ ..+...+..+......+..++.++...+..+
T Consensus 571 e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~el-ee~~~~~~~a~r~rk~aE~el~e~~~~~~~l 649 (859)
T PF01576_consen 571 EAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAEL-EELREALEQAERARKQAESELDELQERLNEL 649 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666555555555544444444444444432 2222222222222222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1054 YTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGE 1133 (1804)
Q Consensus 1054 ~~~i~~Le~~l~~le~~l~~l~~el~~~~~~~~~le~el~~l~~el~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~Le~~ 1133 (1804)
. .....+......+...+..+...+.........+..+...+...+..+..+|...+.....++..
T Consensus 650 ~--------------~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~ 715 (859)
T PF01576_consen 650 T--------------SQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKE 715 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H--------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11222222233333444444444444444555555556666667777777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000239 1134 KRISDQEVSALNSKLNACR 1152 (1804)
Q Consensus 1134 ~~~le~e~~~l~~~l~~l~ 1152 (1804)
...++..+.++..++..+.
T Consensus 716 k~~LE~q~keLq~rl~e~E 734 (859)
T PF01576_consen 716 KKALERQVKELQARLEEAE 734 (859)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888877776653
No 27
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.45 E-value=2e-08 Score=129.00 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=61.1
Q ss_pred hHHHHHHhHHhh--------Hhhccccc----cCCCccccccccccchhhhhhhhhhhhcCcchhhHHHHHHHHHHHHH-
Q 000239 1202 NMELIVEDIRIG--------VVGKGSAV----TEGNSDVTKSFMDDIDNIEMYDNEVTVLDADDITSCFRKTAEGFQMR- 1268 (1804)
Q Consensus 1202 ~~~~~l~~l~~~--------l~~~~~~~----~e~~~~~~~~l~~~l~~~~~~~~~~~~~~~e~~~~~lr~~l~e~~~~- 1268 (1804)
+|+.++..|... .||.|.+| +.|+....-.|.+.++.|. +.++.| ...||..++.+...
T Consensus 476 ~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFi-------v~sh~D-~~~Lr~i~~~~~~~~ 547 (1074)
T KOG0250|consen 476 NMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFI-------VTSHKD-ARILRAIMRRLKIPG 547 (1074)
T ss_pred hhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhhe-------eCCHhh-HHHHHHHHHHcCCCC
Confidence 445555555543 26677776 7788777778888889984 334444 46788888877665
Q ss_pred --HHHHHHhhhhcccc----hHHHHHHHHHHHHHHHHHHHHHHHh
Q 000239 1269 --TKILTDTFEHFSVS----IDEFIAALLRKLQTTRDEVVRMTQC 1307 (1804)
Q Consensus 1269 --~k~L~~~~~~l~~~----~d~~i~~l~~~lq~~e~~~~~~~~e 1307 (1804)
..++...+.++.+. +...+++++..+......+.++.-.
T Consensus 548 ~~ptIvvs~~~~~~y~~~~~p~~~~pTil~~le~ddp~V~N~LID 592 (1074)
T KOG0250|consen 548 NRPTIVVSSFTPFDYSVGRNPGYEFPTILDALEFDDPEVLNVLID 592 (1074)
T ss_pred CCCcEEEecCCccccccccCCCCCCCceeeeeecCChHHHHHhhh
Confidence 44444555555444 2233567777777766666655444
No 28
>PRK01156 chromosome segregation protein; Provisional
Probab=99.44 E-value=8.3e-07 Score=123.08 Aligned_cols=60 Identities=23% Similarity=0.229 Sum_probs=35.9
Q ss_pred hhhHH-HHHHHHhhhhhh--hcccCcc-----cCcc----cccchhhhHhhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000239 243 DQYVE-VVADRMLSYLAM--VVYQGEL-----MDSS----ISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLSKP 306 (1804)
Q Consensus 243 ~~~~e-~~~~~~l~~~~n--vv~QGdv-----m~~~----~~~~i~~lE~~~~~~~ek~~~~~~eie~l~~~l~~~ 306 (1804)
...+. ..++...++|.| ++.||+| |+|. .++.+. |+..|..-|..+...+..++..+...
T Consensus 114 ~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~~~~~~r~~~ld~~~----~~~~~~~~~~~~~~~~~~~~~ei~~l 185 (895)
T PRK01156 114 TKYIEKNILGISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEIL----EINSLERNYDKLKDVIDMLRAEISNI 185 (895)
T ss_pred HHHHHHHHcCCCHHHhceeEEEeccchHHHHhCCHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 455655667733 5789998 4666 444555 66666666666666666555554433
No 29
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.37 E-value=3.5e-05 Score=107.96 Aligned_cols=21 Identities=0% Similarity=-0.054 Sum_probs=19.1
Q ss_pred hccCCChhhHHHHHHHHHHhh
Q 000239 626 SQTSSDPTAIISKCIGKIREQ 646 (1804)
Q Consensus 626 ~~~~vd~~~~a~~~~~~Lk~~ 646 (1804)
..++|++...|..||.+|--+
T Consensus 711 ~~iVv~d~~~A~~ai~~L~~~ 731 (1486)
T PRK04863 711 HAIVVPDLSDAAEQLAGLEDC 731 (1486)
T ss_pred CeEEeCCHHHHHHHHHhccCC
Confidence 778899999999999999985
No 30
>PRK03918 chromosome segregation protein; Provisional
Probab=99.34 E-value=1.1e-05 Score=112.39 Aligned_cols=6 Identities=33% Similarity=0.340 Sum_probs=2.1
Q ss_pred HHHHHH
Q 000239 760 SEIEKL 765 (1804)
Q Consensus 760 ~ele~l 765 (1804)
..+..+
T Consensus 252 ~~~~~l 257 (880)
T PRK03918 252 GSKRKL 257 (880)
T ss_pred HHHHHH
Confidence 333333
No 31
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.04 E-value=0.001 Score=93.82 Aligned_cols=78 Identities=13% Similarity=0.238 Sum_probs=45.3
Q ss_pred HHHHHHhhhhhhcccchhh-cccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000239 1520 IRKLVDKISGIEIPYAESA-GDEEPESSAIVKKLFSIINSATKLPHQIDLLEHGKQELQSILSTQTAEIEHLKGEVETH 1597 (1804)
Q Consensus 1520 ~~~l~~ki~~l~~~~~e~~-~~~~~~~~~~~~kL~~~~~~~~~l~~ei~~l~~ei~~l~~~i~~~~~ei~~l~~el~~~ 1597 (1804)
+.++...+..++.....-- .............|.........+...+...+.+|+.+...+.....++..+...+...
T Consensus 1036 L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~a 1114 (1486)
T PRK04863 1036 LQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114 (1486)
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666776666666433 22222234445555555555666666666666666666666666666666666665555
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.90 E-value=0.0013 Score=85.92 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=29.8
Q ss_pred cccccccCCCCccchhhHHhhhhhccccccccccCCCCCchhHHHHH
Q 000239 54 ESVASNEAEPSYSEENIVVSLKENQNQNHLVETDVGSGSNHELERLR 100 (1804)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1804)
.+++++.-..----.|.-+.+..+.| |+.|.+|+|-+-+++++-
T Consensus 40 G~I~sI~L~NFMCHsnL~IeFg~~vN---fI~G~NGSGKSAIltAl~ 83 (1074)
T KOG0250|consen 40 GKIESIHLTNFMCHSNLLIEFGPRVN---FIVGNNGSGKSAILTALT 83 (1074)
T ss_pred ceEEEEEEeeecccccceeccCCCce---EeecCCCCcHHHHHHHHH
Confidence 34455544434444555566666666 999999999999988863
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.89 E-value=0.0031 Score=89.54 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000239 409 QSLADKTIELEKCLAELQEK 428 (1804)
Q Consensus 409 ~eiee~~~ele~~~~eie~~ 428 (1804)
.+++.+...+..+...+..+
T Consensus 359 ~~~~~l~~~~~~Lt~~~~di 378 (1201)
T PF12128_consen 359 NELENLQEQLDLLTSKHQDI 378 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 34
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.80 E-value=0.0019 Score=82.89 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 698 KLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLN 768 (1804)
Q Consensus 698 ~~~~l~~e~~~l~~e~~~l~~el~~~e~k~~~l~e~l~~~~~k~k~l~~e~~~l~~~ieel~~ele~l~~e 768 (1804)
.+..+....+.+.+.+..+...+..++..+.++...+..+.+.+.+|..+...+.....++...++.++..
T Consensus 1226 ~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~s 1296 (1758)
T KOG0994|consen 1226 DIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKES 1296 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455556666666666667777777777777776666666666677777777777777777777776543
No 35
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.80 E-value=0.0024 Score=82.19 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1029 GAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLAD 1108 (1804)
Q Consensus 1029 ~~~le~ele~l~~el~~l~~~l~~~~~~i~~Le~~l~~le~~l~~l~~el~~~~~~~~~le~el~~l~~el~~~~~~l~~ 1108 (1804)
...+..++...+.++..+..+.......+..|..++.....++..+...-.........+...+..+..+..........
T Consensus 311 vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~ 390 (522)
T PF05701_consen 311 VESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEE 390 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555544444443333334444444444444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000239 1109 AHTTIKSMEDALLKAKNDIS 1128 (1804)
Q Consensus 1109 ~~~~l~~l~~~l~~~~~~l~ 1128 (1804)
...++..+..++......+.
T Consensus 391 ~~~E~~~~k~E~e~~ka~i~ 410 (522)
T PF05701_consen 391 AKEEVEKAKEEAEQTKAAIK 410 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.61 E-value=0.0031 Score=78.41 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000239 1031 AAVLELEQVREEFVSQTSKLTE 1052 (1804)
Q Consensus 1031 ~le~ele~l~~el~~l~~~l~~ 1052 (1804)
..-.++...+-+...+..++.+
T Consensus 322 rt~aeLh~aRLe~aql~~qLad 343 (546)
T PF07888_consen 322 RTMAELHQARLEAAQLKLQLAD 343 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHH
Confidence 3334444444344444443333
No 37
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.59 E-value=0.0083 Score=77.11 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 851 SYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSL 891 (1804)
Q Consensus 851 ~~~~ele~~l~~le~ei~~l~~~l~~l~~el~el~~e~~~l 891 (1804)
+.+-.++.++..+..+....+.+++.+..+...+...-..+
T Consensus 301 seiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL 341 (1195)
T KOG4643|consen 301 SEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQL 341 (1195)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555555555555544444333
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.59 E-value=0.021 Score=81.43 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q 000239 559 RNEIDRLSASLSAELQEKDYNQKELNDLLCK 589 (1804)
Q Consensus 559 ~~~~~~l~~~l~~~~~e~e~L~~el~~l~~e 589 (1804)
...+..+...+.....++..+...+...+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~ 310 (1201)
T PF12128_consen 280 EQEQPELKEELNELNEELEKLEDEIKELRDE 310 (1201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.53 E-value=0.0089 Score=74.47 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1106 LADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNA 1150 (1804)
Q Consensus 1106 l~~~~~~l~~l~~~l~~~~~~l~~Le~~~~~le~e~~~l~~~l~~ 1150 (1804)
+.+....+.+++..+.-++..-..+..+...+..-+..|+.++..
T Consensus 412 lsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 412 LSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444433
No 40
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=0.014 Score=76.14 Aligned_cols=104 Identities=10% Similarity=0.146 Sum_probs=52.9
Q ss_pred HHHHhhhHHHHHHhhccCc--hhhhhhccccccchHHHHHHHHHHHHHhhhhHHHHHh-----hcchhhhhhhhhhhhhH
Q 000239 1611 FAEFTFGLEKIVNMLESNE--FVVNQKSSGSKGLLAVLEKQIMTLHSDAENSKSKVQE-----LGNKLLESQKEVDDLTT 1683 (1804)
Q Consensus 1611 l~e~~~~le~~i~~l~~~~--a~~d~~~~~~~gel~~l~~qi~~l~~E~k~~~~~~~~-----~~iklqt~~~~~~DL~~ 1683 (1804)
|...+..+...+..+ .+| |...++.+. ...+........++-+.+++.|.. .+-=..+=..+.+-|+.
T Consensus 934 L~~kl~e~~~~l~~~-~Pn~kA~~~~d~v~----~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~va~~Id~ 1008 (1141)
T KOG0018|consen 934 LQQKLEEKQSVLNRI-APNLKALERLDEVR----FQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEHVADNIDR 1008 (1141)
T ss_pred HHHHHHHHHHHHHHh-CcchHHHhhhhhHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555 455 333333222 444444555555555555555542 22222334468888999
Q ss_pred hHHHHHHHhhccCCCchhhhhhhhcccC--------CCCCCccccccccc
Q 000239 1684 KVDLLEESLHGRRDQPEIVQERSIFEAS--------SLPTGSEISEVEDV 1725 (1804)
Q Consensus 1684 y~kALD~a~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 1725 (1804)
-+|.|-+++ -|-=+.-+ ..+.| -.|.|-+--.|+-+
T Consensus 1009 IYK~Ltnt~----g~AyL~~e--n~~EPyl~GIky~~~pP~KRFr~m~~L 1052 (1141)
T KOG0018|consen 1009 IYKELTNTE----GQAYLGLE--NPEEPYLDGIKYHCMPPGKRFRPMDNL 1052 (1141)
T ss_pred HHHHhcccc----cceeecCC--CCCcchhcCccccccCCccccCchhhc
Confidence 999998666 22211111 12223 45667777777766
No 41
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.47 E-value=0.017 Score=74.50 Aligned_cols=75 Identities=24% Similarity=0.246 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000239 944 RKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLT 1018 (1804)
Q Consensus 944 i~~le~~l~~l~~ei~~l~~e~e~le~~~~~l~~ele~l~~el~~l~~~l~e~~~~i~~Le~~l~~~e~~l~~l~ 1018 (1804)
+......+..+...+.....+...+......+..++...+..+..++.+.......+..|+..+.....++..+.
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444555555555555555555554444555555555555555544333
No 42
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.45 E-value=0.014 Score=72.73 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 861 TQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKIT 903 (1804)
Q Consensus 861 ~~le~ei~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~ 903 (1804)
..+++....++.....+..++......+..+..++..++....
T Consensus 266 k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t 308 (1265)
T KOG0976|consen 266 KEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRT 308 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444445555555555555555555544443
No 43
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.43 E-value=0.021 Score=73.94 Aligned_cols=46 Identities=13% Similarity=0.307 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 000239 761 EIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIAMKDE 806 (1804)
Q Consensus 761 ele~l~~el~~~e~~~~el~~~l~~l~~~~e~~~~Le~ei~~l~~~ 806 (1804)
+|..+-.+|...-..+.....-|......+.+...|+++-.+.+..
T Consensus 1512 qi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~ 1557 (1758)
T KOG0994|consen 1512 QIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSR 1557 (1758)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhH
Confidence 4445555555555555555555555555555666665555443333
No 44
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.34 E-value=0.032 Score=72.01 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=13.2
Q ss_pred ccccccccCCcccCCCcccc
Q 000239 1778 HVFKSLNTLGLIPRQGKMVA 1797 (1804)
Q Consensus 1778 ~~~~~~~~~~~~~~~~~~~~ 1797 (1804)
|.+-|++-++.+|--+-|.|
T Consensus 1076 ~~~t~p~~~rr~pih~S~~a 1095 (1195)
T KOG4643|consen 1076 HIYTSPFLPRRVPIHNSPMA 1095 (1195)
T ss_pred cccCCCCCcccccccCCCCC
Confidence 77777777777776655544
No 45
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.31 E-value=0.043 Score=71.95 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhHhhHHHHH
Q 000239 773 ESTISECRDQINRLSNDLDCIR 794 (1804)
Q Consensus 773 e~~~~el~~~l~~l~~~~e~~~ 794 (1804)
...+..++..+..+...++.++
T Consensus 197 ~e~l~~l~~~~~~l~~~~~~iP 218 (569)
T PRK04778 197 REILDQLEEELAALEQIMEEIP 218 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 46
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.30 E-value=0.072 Score=74.18 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=47.9
Q ss_pred hhhhhHHHHHHHHhhhh--hhhcccCcc---c--Ccc-------cccchhhhHhhHHHHHHHHHHHHHHHHHHHhhhc
Q 000239 241 EKDQYVEVVADRMLSYL--AMVVYQGEL---M--DSS-------ISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLS 304 (1804)
Q Consensus 241 ~~~~~~e~~~~~~l~~~--~nvv~QGdv---m--~~~-------~~~~i~~lE~~~~~~~ek~~~~~~eie~l~~~l~ 304 (1804)
..+..|...+|..++.| .-++.||+| + .|. .+.++..|+.....+.+.+..+...++.+...+.
T Consensus 118 ~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 118 DVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778778888 667889999 3 233 5555666777777778888888888888888877
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.16 E-value=0.015 Score=70.74 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 000239 723 SEEKSALLREKLSMAV 738 (1804)
Q Consensus 723 ~e~k~~~l~e~l~~~~ 738 (1804)
++..+..++..+....
T Consensus 52 ye~el~~lr~~id~~~ 67 (312)
T PF00038_consen 52 YEEELRELRRQIDDLS 67 (312)
T ss_dssp HHHHHHCHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHH
Confidence 4444444444444443
No 48
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.14 E-value=0.044 Score=66.59 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000239 852 YINECHDTKTQLEQELGN 869 (1804)
Q Consensus 852 ~~~ele~~l~~le~ei~~ 869 (1804)
.+..|+.....+..+|..
T Consensus 19 kVr~LE~~N~~Le~~i~~ 36 (312)
T PF00038_consen 19 KVRFLEQENKRLESEIEE 36 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHH
Confidence 333344444444433333
No 49
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.12 E-value=0.17 Score=71.30 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=55.0
Q ss_pred hhhhhHHHHHHHHhhhh--hhhcccCcc-----cCcc-------cccchhhhHhhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000239 241 EKDQYVEVVADRMLSYL--AMVVYQGEL-----MDSS-------ISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLSKP 306 (1804)
Q Consensus 241 ~~~~~~e~~~~~~l~~~--~nvv~QGdv-----m~~~-------~~~~i~~lE~~~~~~~ek~~~~~~eie~l~~~l~~~ 306 (1804)
..+..|+..+|..++.| .-|++||+| ++|. .+.|+..|.+....+.+++.+....+..+...+..+
T Consensus 131 ~v~~~i~~llgl~~~~F~~~v~l~QG~f~~fl~a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~ 210 (1047)
T PRK10246 131 DKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGV 210 (1047)
T ss_pred HHHHHHHHHhCCCHHHhhhheeeccccHHHHHhCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45677888899999999 667789999 3444 677788888888888999999999999999999766
Q ss_pred C
Q 000239 307 D 307 (1804)
Q Consensus 307 ~ 307 (1804)
.
T Consensus 211 ~ 211 (1047)
T PRK10246 211 A 211 (1047)
T ss_pred c
Confidence 5
No 50
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.12 E-value=0.024 Score=70.79 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=18.4
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 784 NRLSNDLDCIRKMEADLIAMKDERNQFEHF 813 (1804)
Q Consensus 784 ~~l~~~~e~~~~Le~ei~~l~~~~~e~e~~ 813 (1804)
+.|...+++++.|+.+-..|...+..++..
T Consensus 49 DRLA~YIekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 49 DRLAVYIEKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455677777777776666666555543
No 51
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.11 E-value=0.13 Score=69.78 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 000239 281 STYMLIEKYNQMLYEIYQLGQCLSKPD 307 (1804)
Q Consensus 281 ~~~~~~ek~~~~~~eie~l~~~l~~~~ 307 (1804)
.+..+........++|..+...+....
T Consensus 269 ~~~~l~~e~~~l~~~~~~l~~~i~~~~ 295 (1294)
T KOG0962|consen 269 QVKLLDSEHKNLKKQISRLREKILKIF 295 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 555666677777777777777776443
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.09 E-value=0.029 Score=70.00 Aligned_cols=78 Identities=21% Similarity=0.154 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 749 ENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLD----CI-RKMEADLIAMKDERNQFEHFLLESNNMLQK 823 (1804)
Q Consensus 749 ~~l~~~ieel~~ele~l~~el~~~e~~~~el~~~l~~l~~~~e----~~-~~Le~ei~~l~~~~~e~e~~L~e~e~~l~~ 823 (1804)
.+=+.+|.+|+..|...-.....++.+-..|...+..+..-.. .+ ...+.++...+.-+++.......++..+.+
T Consensus 38 ~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 38 EREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666665565555555555555532111 11 234445555555555555444444444444
Q ss_pred HHH
Q 000239 824 VLE 826 (1804)
Q Consensus 824 l~~ 826 (1804)
+..
T Consensus 118 l~~ 120 (546)
T KOG0977|consen 118 LRE 120 (546)
T ss_pred hHH
Confidence 443
No 53
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.08 E-value=0.11 Score=67.74 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHhHHHHHHHHHHHHHHhH
Q 000239 1119 ALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSLESRSVELIGHLNDLQMHM 1180 (1804)
Q Consensus 1119 ~l~~~~~~l~~Le~~~~~le~e~~~l~~~l~~l~~el~~~~~~~~~~~~~l~~~l~~l~~~~ 1180 (1804)
.+..+...+..++.....-...+..+...+..+........+.+......+..+-++|..+|
T Consensus 399 e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLY 460 (717)
T PF09730_consen 399 EVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLY 460 (717)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443434466667777766666666666666666666666666665555
No 54
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.95 E-value=0.12 Score=63.95 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=19.7
Q ss_pred HHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1302 VRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSAC 1343 (1804)
Q Consensus 1302 ~~~~~e~e~lk~~l~~le~e~~~le~~l~~le~el~~l~~~~ 1343 (1804)
-.+..+++.|++.+..+-.-.....++...|+-++..+....
T Consensus 907 p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~mY 948 (961)
T KOG4673|consen 907 PGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEMY 948 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHH
Confidence 334444444444444333333444555555665555554433
No 55
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.87 E-value=0.18 Score=63.12 Aligned_cols=49 Identities=18% Similarity=0.088 Sum_probs=23.0
Q ss_pred HHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1304 MTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQF 1352 (1804)
Q Consensus 1304 ~~~e~e~lk~~l~~le~e~~~le~~l~~le~el~~l~~~~~~~~~el~~ 1352 (1804)
++.+...|+.++..-.......+-.+..++.++..+......-...++.
T Consensus 613 LqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~k 661 (786)
T PF05483_consen 613 LQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQK 661 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444555554444444555555555555555444433333333433
No 56
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.81 E-value=0.23 Score=62.50 Aligned_cols=30 Identities=20% Similarity=0.146 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 797 EADLIAMKDERNQFEHFLLESNNMLQKVLE 826 (1804)
Q Consensus 797 e~ei~~l~~~~~e~e~~L~e~e~~l~~l~~ 826 (1804)
+.++..++..+..+...+..++..++.+++
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ 127 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQD 127 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444443333
No 57
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.64 E-value=0.00029 Score=94.88 Aligned_cols=12 Identities=25% Similarity=0.301 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 000239 1186 LSAVKSCFERKI 1197 (1804)
Q Consensus 1186 l~~~~~~~~kk~ 1197 (1804)
...++.+|..+.
T Consensus 622 ~~RLkevf~~ks 633 (722)
T PF05557_consen 622 NQRLKEVFKAKS 633 (722)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444666777664
No 58
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.63 E-value=0.52 Score=61.63 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000239 749 ENLKLQLDEKNSEIEKLKLNLQ 770 (1804)
Q Consensus 749 ~~l~~~ieel~~ele~l~~el~ 770 (1804)
..+-..++.++..+..+...+.
T Consensus 157 ~~~G~a~~~Le~~L~~ie~~F~ 178 (560)
T PF06160_consen 157 FSYGPAIEELEKQLENIEEEFS 178 (560)
T ss_pred hhhchhHHHHHHHHHHHHHHHH
Confidence 3444444445555555444444
No 59
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.59 E-value=0.45 Score=59.75 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 000239 318 TVFAAARDELLNLKRR 333 (1804)
Q Consensus 318 ~~~~~l~~el~~lk~~ 333 (1804)
.-|-.|-++...++.|
T Consensus 78 ~LySKL~~EaEKIk~W 93 (786)
T PF05483_consen 78 RLYSKLYKEAEKIKKW 93 (786)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566666667776
No 60
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.58 E-value=0.61 Score=61.04 Aligned_cols=62 Identities=21% Similarity=0.141 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHhH
Q 000239 399 ALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAE----LSKEEFIKTENLVASLQETLQQSN 460 (1804)
Q Consensus 399 ~l~~~~~~lk~eiee~~~ele~~~~eie~~~~~l~~~e----~l~~el~~~k~~~~~l~~~~~~k~ 460 (1804)
+++.....++..+.....+.+++......+....+.++ .|+.++..+|.+...|-..+.+.+
T Consensus 38 ~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselE 103 (717)
T PF09730_consen 38 ELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELE 103 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33333444444444455555555555544444444443 366666666666655555554433
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.54 E-value=0.073 Score=70.16 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1084 GKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACR 1152 (1804)
Q Consensus 1084 ~~~~le~el~~l~~el~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~Le~~~~~le~e~~~l~~~l~~l~ 1152 (1804)
+...|-..|..+++.-..++..+..=..-.-.|=.+|..+..+++.++..+..-+.+|.+|..++..+.
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554444333333344456667777777777777777777777766665543
No 62
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.45 E-value=2.9e-05 Score=104.11 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 000239 777 SECRDQINRLSNDLDCIRKMEADLIAMKDERNQF 810 (1804)
Q Consensus 777 ~el~~~l~~l~~~~e~~~~Le~ei~~l~~~~~e~ 810 (1804)
..|+.+++.+....+++.+++..+..|+....++
T Consensus 294 ~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~ 327 (713)
T PF05622_consen 294 RALRDELDELREKADRADKLENEVEKYKKKLEDL 327 (713)
T ss_dssp ----------------------------------
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555444455555555555555544433
No 63
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.41 E-value=0.001 Score=89.68 Aligned_cols=9 Identities=44% Similarity=0.261 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 000239 1188 AVKSCFERK 1196 (1804)
Q Consensus 1188 ~~~~~~~kk 1196 (1804)
++..-||=+
T Consensus 639 av~~llGyk 647 (722)
T PF05557_consen 639 AVYSLLGYK 647 (722)
T ss_dssp HHHHHHSEE
T ss_pred HHHHHhcce
Confidence 344445533
No 64
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.37 E-value=1.3 Score=59.65 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 000239 281 STYMLIEKYNQMLYEIYQLGQC 302 (1804)
Q Consensus 281 ~~~~~~ek~~~~~~eie~l~~~ 302 (1804)
+++.|.+.|.-.-.++..|+-.
T Consensus 52 ~i~~fl~~~kp~v~~v~~lrl~ 73 (1317)
T KOG0612|consen 52 NIAEFLNRYKPIVKKVKELRLK 73 (1317)
T ss_pred hHHHHHHHhHHHHHHHHHHhCC
Confidence 4444444444444444444433
No 65
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.30 E-value=1.2 Score=58.18 Aligned_cols=8 Identities=0% Similarity=0.107 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 000239 868 GNVKQEAS 875 (1804)
Q Consensus 868 ~~l~~~l~ 875 (1804)
..+...++
T Consensus 204 ~~l~~~~e 211 (560)
T PF06160_consen 204 DELEEIME 211 (560)
T ss_pred HHHHHHHH
Confidence 33333333
No 66
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.18 E-value=0.61 Score=61.80 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000239 757 EKNSEIEKLKLNLQEQESTISECRDQINRL 786 (1804)
Q Consensus 757 el~~ele~l~~el~~~e~~~~el~~~l~~l 786 (1804)
.+..+++.+......++.++..++.++..+
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344333333
No 67
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.18 E-value=8.8e-05 Score=99.52 Aligned_cols=63 Identities=21% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Q 000239 747 DRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIAMKDERNQ 809 (1804)
Q Consensus 747 e~~~l~~~ieel~~ele~l~~el~~~e~~~~el~~~l~~l~~~~e~~~~Le~ei~~l~~~~~e 809 (1804)
.+..++.++..++..+..++..+...+..+..++.+...+.....+...+.+++..++...+.
T Consensus 247 ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r 309 (713)
T PF05622_consen 247 QLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADR 309 (713)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344444444444444444455555555566666666666655555566666666666554443
No 68
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.41 Score=61.07 Aligned_cols=93 Identities=11% Similarity=0.170 Sum_probs=52.3
Q ss_pred ccccCCcCCccc--CCCchhhHHHHHHHHHHHHHHHhhhhhhHHHhHhHHhhhhhHhhHHHHHHHHHHHhhHHHHHhhhh
Q 000239 152 KEFGESDGKRQV--GDAPLHELLSECSQFLRSALEERSKNESAIREINAVLYKKDREIEHLNAKVAEILVSHDVAAAYLN 229 (1804)
Q Consensus 152 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 229 (1804)
+.+.|.+.+.++ ++--|..|-+.|-- -|+++.+-.+-.|+|-+.+.- |+.+...|..
T Consensus 6 ~~~~g~~q~~k~~s~aETI~kLcDRves--sTL~eDRR~A~rgLKa~srkY--------R~~Vga~Gmk----------- 64 (970)
T KOG0946|consen 6 GSYNGGQQPPKQQSAAETIEKLCDRVES--STLLEDRRDAVRGLKAFSRKY--------REEVGAQGMK----------- 64 (970)
T ss_pred hcccccCCCCccccHHhHHHHHHHHHhh--ccchhhHHHHHHHHHHHHHHH--------HHHHHHcccH-----------
Confidence 445455555333 55556666554432 235677777777777666433 2233333321
Q ss_pred cccccchHHHHhhhhhHHHHHHHHhhhhhhhcccCcc---cCcc
Q 000239 230 SAAGITSEAQIEKDQYVEVVADRMLSYLAMVVYQGEL---MDSS 270 (1804)
Q Consensus 230 ~~~~~~~~~~~~~~~~~e~~~~~~l~~~~nvv~QGdv---m~~~ 270 (1804)
++-+.++...-=...++-.|+++.||+.-||. |+.+
T Consensus 65 -----~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds 103 (970)
T KOG0946|consen 65 -----PLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDS 103 (970)
T ss_pred -----HHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccc
Confidence 12233445444466778888899999999874 6533
No 69
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.17 E-value=0.085 Score=69.84 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000239 883 ETQSTMKSLEDALSVAEDK 901 (1804)
Q Consensus 883 el~~e~~~le~el~~le~~ 901 (1804)
.+..++..+..++..+...
T Consensus 178 e~~~~i~~l~~~i~~l~~~ 196 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQ 196 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 70
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.17 E-value=0.77 Score=53.16 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 749 ENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQI 783 (1804)
Q Consensus 749 ~~l~~~ieel~~ele~l~~el~~~e~~~~el~~~l 783 (1804)
..+...-+++..++..++..+......+..+...+
T Consensus 58 ~elr~~rdeineev~elK~kR~ein~kl~eL~~~~ 92 (294)
T COG1340 58 QELREERDEINEEVQELKEKRDEINAKLQELRKEY 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444333333
No 71
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.13 E-value=0.65 Score=60.24 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 000239 1033 VLELEQVREEF 1043 (1804)
Q Consensus 1033 e~ele~l~~el 1043 (1804)
..++..|...+
T Consensus 577 ~rEirdLe~qI 587 (594)
T PF05667_consen 577 SREIRDLEEQI 587 (594)
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 72
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.05 E-value=0.94 Score=52.04 Aligned_cols=77 Identities=26% Similarity=0.214 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 701 VASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECR 780 (1804)
Q Consensus 701 ~l~~e~~~l~~e~~~l~~el~~~e~k~~~l~e~l~~~~~k~k~l~~e~~~l~~~ieel~~ele~l~~el~~~e~~~~el~ 780 (1804)
.+..++..+++..+.|+..+.--++.+...--+. . .++..|..+-..+.++++.-+...+.++.++.+++
T Consensus 28 ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy---~-------~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~r 97 (305)
T PF14915_consen 28 KYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQY---N-------GQLNVLKAENTMLNSKLEKEKQNKERLETEIESYR 97 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---h-------hhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH
Confidence 4556777777777777777766554333222221 1 34556666666667777777777777777777777
Q ss_pred HHHHHhH
Q 000239 781 DQINRLS 787 (1804)
Q Consensus 781 ~~l~~l~ 787 (1804)
.+|...-
T Consensus 98 sRLaaAi 104 (305)
T PF14915_consen 98 SRLAAAI 104 (305)
T ss_pred HHHHHHH
Confidence 6666553
No 73
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.01 E-value=2.1 Score=55.76 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 000239 1054 YTTIKSLEDAL 1064 (1804)
Q Consensus 1054 ~~~i~~Le~~l 1064 (1804)
..++..|+..|
T Consensus 577 ~rEirdLe~qI 587 (594)
T PF05667_consen 577 SREIRDLEEQI 587 (594)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 74
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.01 E-value=2.3 Score=55.69 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 695 LSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLS 735 (1804)
Q Consensus 695 l~~~~~~l~~e~~~l~~e~~~l~~el~~~e~k~~~l~e~l~ 735 (1804)
+..++..+..++..+..++......+..++..+..|+..+.
T Consensus 27 ~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 27 WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556666777777777777777777777777777665554
No 75
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=1.2 Score=57.24 Aligned_cols=63 Identities=19% Similarity=0.078 Sum_probs=35.1
Q ss_pred hHHHhHhHHhhhhhHhhHHHHHHHHHH--------HhhHHHHH---hhhhcccccchHHHHhhhhhHHHHHHHHh
Q 000239 191 SAIREINAVLYKKDREIEHLNAKVAEI--------LVSHDVAA---AYLNSAAGITSEAQIEKDQYVEVVADRML 254 (1804)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~~l~~~~~~~--------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 254 (1804)
-+|.=+..++.-|-.|.-++-.-.--| --||+|++ .++-..+.=+- -.+|+--.+|.+.-|++
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n-~~IQKlVAFENaFerLf 214 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDN-SSIQKLVAFENAFERLF 214 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccC-chHHHHHHHHHHHHHHH
Confidence 456666777777777766655444433 11456666 22222111111 14577778888888876
No 76
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.96 E-value=0.75 Score=49.35 Aligned_cols=41 Identities=10% Similarity=0.146 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 951 MSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTS 991 (1804)
Q Consensus 951 l~~l~~ei~~l~~e~e~le~~~~~l~~ele~l~~el~~l~~ 991 (1804)
+.-+.+++.......+........+..++..+.+.+..+..
T Consensus 90 L~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~ 130 (205)
T KOG1003|consen 90 LVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSA 130 (205)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 33334444444444444444444454455544444444433
No 77
>PRK11637 AmiB activator; Provisional
Probab=96.83 E-value=0.86 Score=57.89 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000239 885 QSTMKSLEDALSVAEDKITQ 904 (1804)
Q Consensus 885 ~~e~~~le~el~~le~~i~~ 904 (1804)
..++..+..++......+..
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~ 65 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQ 65 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 78
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.75 E-value=4.2 Score=54.98 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=12.7
Q ss_pred CcCCCccccCCchhhhhh
Q 000239 1728 GTLGQKTISPVPSAAHTR 1745 (1804)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~~ 1745 (1804)
.++|+.+..|.|.++|++
T Consensus 1283 ~~l~k~~~k~~~~~~~~~ 1300 (1317)
T KOG0612|consen 1283 QRLVKKIPKPLPAAGSFS 1300 (1317)
T ss_pred HHHhcccCCCCCccccee
Confidence 678888777777766654
No 79
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=2.8 Score=52.44 Aligned_cols=10 Identities=10% Similarity=-0.047 Sum_probs=5.6
Q ss_pred HHHHHHhhcc
Q 000239 639 CIGKIREQTC 648 (1804)
Q Consensus 639 ~~~~Lk~~~~ 648 (1804)
..+||..++.
T Consensus 79 I~~fL~engf 88 (581)
T KOG0995|consen 79 IYNFLVENGF 88 (581)
T ss_pred HHHHHHHcCC
Confidence 3556666643
No 80
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.63 E-value=2.5 Score=50.72 Aligned_cols=87 Identities=8% Similarity=0.153 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1053 AYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEG 1132 (1804)
Q Consensus 1053 ~~~~i~~Le~~l~~le~~l~~l~~el~~~~~~~~~le~el~~l~~el~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~Le~ 1132 (1804)
+..++...-.+..+++..+.....-...+..++..+...+..+..+...+..+....+..+-.+..+.......+..+..
T Consensus 214 Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~ 293 (309)
T PF09728_consen 214 LREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKK 293 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444434444444444455555555555555555555555555555555555555544444554444
Q ss_pred HHHHHHH
Q 000239 1133 EKRISDQ 1139 (1804)
Q Consensus 1133 ~~~~le~ 1139 (1804)
.+..++.
T Consensus 294 k~~kLe~ 300 (309)
T PF09728_consen 294 KIEKLEK 300 (309)
T ss_pred HHHHHHH
Confidence 4444433
No 81
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.59 E-value=2.1 Score=49.36 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000239 799 DLIAMKDERNQFEHFLLESN 818 (1804)
Q Consensus 799 ei~~l~~~~~e~e~~L~e~e 818 (1804)
+|.-++...+.+...+.-.+
T Consensus 32 diei~Kekn~~Lqk~lKLne 51 (305)
T PF14915_consen 32 DIEILKEKNDDLQKSLKLNE 51 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhH
Confidence 34444444455555444333
No 82
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.56 E-value=5.1 Score=53.48 Aligned_cols=90 Identities=26% Similarity=0.363 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000239 863 LEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEACA 942 (1804)
Q Consensus 863 le~ei~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~~L~~e~~~le~~~~ele~~l~~~~~el~~~~~~l~el~~ 942 (1804)
+..++..+......+...+..+...+..+..++.+.+..+..++.+..........++.++..+......+..++..+..
T Consensus 594 l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~ 673 (769)
T PF05911_consen 594 LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEA 673 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 33344444444445555555555555555555555555555555555555555555555555554444444444443333
Q ss_pred HHHHHHHHHH
Q 000239 943 SRKSLEDEMS 952 (1804)
Q Consensus 943 ~i~~le~~l~ 952 (1804)
++..+...+.
T Consensus 674 E~~~l~~Ki~ 683 (769)
T PF05911_consen 674 EAEELQSKIS 683 (769)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.55 E-value=3.6 Score=51.56 Aligned_cols=9 Identities=0% Similarity=0.165 Sum_probs=3.9
Q ss_pred HHHHHhhcc
Q 000239 640 IGKIREQTC 648 (1804)
Q Consensus 640 ~~~Lk~~~~ 648 (1804)
...||..++
T Consensus 131 ~~ilK~L~Y 139 (581)
T KOG0995|consen 131 VQILKNLKY 139 (581)
T ss_pred HHHHHhCCC
Confidence 334444444
No 84
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.55 E-value=4.4 Score=52.62 Aligned_cols=111 Identities=18% Similarity=0.201 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhhhhhhcccchhhcccccchHH
Q 000239 1468 LEHSCKELRLKVEDLEAKEEKLKENEAKISLLYDRLSRKEQEAEGLFLSPLQIRKLVDKISGIEIPYAESAGDEEPESSA 1547 (1804)
Q Consensus 1468 l~~~~~~l~~~l~~~~~~e~~l~~~~~ei~~l~~~l~~~~~~le~~~~~~~~~~~l~~ki~~l~~~~~e~~~~~~~~~~~ 1547 (1804)
+..+-.-+++.+++...++-.+...+.+|.+|...+.....++. ++.-...-+++.+. ..-+.
T Consensus 936 l~~RA~~~K~~~edaegL~~tle~re~eikeLkk~aKmkqeelS----------e~qvRldmaEkkLs-------s~~k~ 998 (1243)
T KOG0971|consen 936 LELRAAALKAEIEDAEGLGLTLEDRETEIKELKKSAKMKQEELS----------EAQVRLDLAEKKLS-------SAAKD 998 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHhhHHHHH----------HHHHHHHHHHHHhh-------hhhhh
Confidence 44455556666666666666777777777777665544333322 22222211111111 11122
Q ss_pred HHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1548 IVKKLFSIINSATK----LPHQIDLLEHGKQELQSILSTQTAEIEHLKGEVE 1595 (1804)
Q Consensus 1548 ~~~kL~~~~~~~~~----l~~ei~~l~~ei~~l~~~i~~~~~ei~~l~~el~ 1595 (1804)
..+++..+...+.+ +...-..|...+..|+..|..++.+-.+|++.++
T Consensus 999 ~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~ 1050 (1243)
T KOG0971|consen 999 ADHRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLN 1050 (1243)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 23333333333332 2233334566667777777777766666666553
No 85
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.54 E-value=4.7 Score=52.81 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000239 795 KMEADLIAMKDERNQFEHFLL 815 (1804)
Q Consensus 795 ~Le~ei~~l~~~~~e~e~~L~ 815 (1804)
.++.++..|..+++.+...+.
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlq 104 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQ 104 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544333
No 86
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.50 E-value=0.51 Score=49.73 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 936 KFAEACASRKSLEDEMSVAKNNMSVL 961 (1804)
Q Consensus 936 ~l~el~~~i~~le~~l~~l~~ei~~l 961 (1804)
+...+...+..++........+|..|
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL 40 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSL 40 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 87
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=5.4 Score=51.93 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 403 QRDSLKQSLADKTIELEKCLAELQEKSSALQA 434 (1804)
Q Consensus 403 ~~~~lk~eiee~~~ele~~~~eie~~~~~l~~ 434 (1804)
....+...++.+..++.........+..-+..
T Consensus 91 ~~~e~~~~le~~~~d~eki~~~~~~l~~~la~ 122 (698)
T KOG0978|consen 91 EVDELEQQLEDLQADLEKIRRRSNKLNKHLAE 122 (698)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555556655555555555444444
No 88
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.27 E-value=2.2 Score=46.15 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000239 978 ELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLT 1018 (1804)
Q Consensus 978 ele~l~~el~~l~~~l~e~~~~i~~Le~~l~~~e~~l~~l~ 1018 (1804)
++++++.-...+......+......++.....+...+..|.
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lq 108 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 89
>PF13514 AAA_27: AAA domain
Probab=96.27 E-value=11 Score=54.12 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 000239 790 LDCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIILPVN 836 (1804)
Q Consensus 790 ~e~~~~Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~~~i~el~~~~~ 836 (1804)
..++..+...+..+......+...+......+..+...+..+..+.+
T Consensus 549 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g 595 (1111)
T PF13514_consen 549 AARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAG 595 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33445566666666666677777777777777777766666554433
No 90
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.19 E-value=4.4 Score=48.88 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhcc
Q 000239 635 IISKCIGKIREQTC 648 (1804)
Q Consensus 635 ~a~~~~~~Lk~~~~ 648 (1804)
++....+||+.+|.
T Consensus 109 c~~~I~~yL~engf 122 (622)
T COG5185 109 CQEEIYDYLKENGF 122 (622)
T ss_pred HHHHHHHHHHHcCC
Confidence 45556888888764
No 91
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.19 E-value=3.9 Score=48.17 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000239 893 DALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEACA 942 (1804)
Q Consensus 893 ~el~~le~~i~~L~~e~~~le~~~~ele~~l~~~~~el~~~~~~l~el~~ 942 (1804)
.+|..++.++...++++...+.++.....++.....+.......+..+..
T Consensus 81 ~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~ 130 (499)
T COG4372 81 PQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQ 130 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444433333333
No 92
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.12 E-value=1 Score=47.44 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 943 SRKSLEDEMSVAKNNMSVLICEKEE 967 (1804)
Q Consensus 943 ~i~~le~~l~~l~~ei~~l~~e~e~ 967 (1804)
.+..++..+......+......+..
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e 105 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLRE 105 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 93
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.04 E-value=6.6 Score=49.55 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1111 TTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACR 1152 (1804)
Q Consensus 1111 ~~l~~l~~~l~~~~~~l~~Le~~~~~le~e~~~l~~~l~~l~ 1152 (1804)
.+...+...+....++...+..++..++.++..+..++..+.
T Consensus 711 aE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le 752 (961)
T KOG4673|consen 711 AEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLE 752 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555555555555555544444443
No 94
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.00 E-value=5.3 Score=48.02 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=27.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 840 KEPLEKVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMK 889 (1804)
Q Consensus 840 ~e~~~k~~~l~~~~~ele~~l~~le~ei~~l~~~l~~l~~el~el~~e~~ 889 (1804)
..|.+++..+...+.++-.....+..++..+......+..+...+..+..
T Consensus 18 ~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~ 67 (309)
T PF09728_consen 18 SSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS 67 (309)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777776666655555555554444444444444444333
No 95
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=8.4 Score=49.38 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=12.9
Q ss_pred cccccCCcCCcc---cccccccccccCCcccC
Q 000239 1763 SARLINSEETDE---DKGHVFKSLNTLGLIPR 1791 (1804)
Q Consensus 1763 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 1791 (1804)
++.+|+--+-|| =+||.= .-||+.|.
T Consensus 1074 kgdiI~VlnkdepeWW~Ge~n---g~sGLFPS 1102 (1118)
T KOG1029|consen 1074 KGDIINVLNKDEPEWWSGERN---GKSGLFPS 1102 (1118)
T ss_pred CCCEEEecCCCChhhhccccc---CccccCcc
Confidence 444554444332 266652 34666664
No 96
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.82 E-value=3.6 Score=44.65 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 958 MSVLICEKEEAQASGAAAVVELEQVREEFASQ 989 (1804)
Q Consensus 958 i~~l~~e~e~le~~~~~l~~ele~l~~el~~l 989 (1804)
...+...+..+......+..++..+..++..+
T Consensus 24 n~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 24 NAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444333
No 97
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.57 E-value=6.9 Score=46.20 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 923 LEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKL 993 (1804)
Q Consensus 923 l~~~~~el~~~~~~l~el~~~i~~le~~l~~l~~ei~~l~~e~e~le~~~~~l~~ele~l~~el~~l~~~l 993 (1804)
+..++.++.........+..+......++.....+-.....+...+...+..+..++..+..+...++..+
T Consensus 83 lr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl 153 (499)
T COG4372 83 LRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRL 153 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444444444444444444444444444444444444443
No 98
>PRK09039 hypothetical protein; Validated
Probab=95.56 E-value=1.8 Score=52.94 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 961 LICEKEEAQASGAAAVVELEQVREEFASQTSKLT 994 (1804)
Q Consensus 961 l~~e~e~le~~~~~l~~ele~l~~el~~l~~~l~ 994 (1804)
+..++.............+..++.++..++.++.
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla 154 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLA 154 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444433
No 99
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.24 E-value=6.6 Score=43.92 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 951 MSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAM 1016 (1804)
Q Consensus 951 l~~l~~ei~~l~~e~e~le~~~~~l~~ele~l~~el~~l~~~l~e~~~~i~~Le~~l~~~e~~l~~ 1016 (1804)
+..+..+.+.+...+..++..+..+...+.+++.-+..++..-..+...+......+...+.....
T Consensus 71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~a 136 (207)
T PF05010_consen 71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQA 136 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555556666666655555554444445555555555544444333
No 100
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.15 E-value=25 Score=50.16 Aligned_cols=68 Identities=13% Similarity=0.026 Sum_probs=52.0
Q ss_pred hhhhhHHHHHHHHhhhh--hhhcccCcc-----cCcc-------cccchhhhHhhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000239 241 EKDQYVEVVADRMLSYL--AMVVYQGEL-----MDSS-------ISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLSKP 306 (1804)
Q Consensus 241 ~~~~~~e~~~~~~l~~~--~nvv~QGdv-----m~~~-------~~~~i~~lE~~~~~~~ek~~~~~~eie~l~~~l~~~ 306 (1804)
..+..|...+|..++.| ..+++||+| ++|. .+.|+..|..-...+.++...+...++.+...+..+
T Consensus 127 ~~~~~i~~llGld~~~F~~~~~l~Qg~~~~fl~a~~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (1042)
T TIGR00618 127 ETEEVIHDLLKLDYKTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLL 206 (1042)
T ss_pred HHHHHHHHHhCCCHHHHhhheeecccchHHHHhCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56777888888888889 667899999 3454 566667777666667788888888999999888766
Q ss_pred CC
Q 000239 307 DP 308 (1804)
Q Consensus 307 ~~ 308 (1804)
..
T Consensus 207 ~~ 208 (1042)
T TIGR00618 207 TL 208 (1042)
T ss_pred cC
Confidence 53
No 101
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.79 E-value=17 Score=46.30 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000239 752 KLQLDEKNSEIEKLKLNL 769 (1804)
Q Consensus 752 ~~~ieel~~ele~l~~el 769 (1804)
...+...+.+++.+-..-
T Consensus 65 ~~llK~yQ~EiD~LtkRs 82 (629)
T KOG0963|consen 65 NPLLKSYQSEIDNLTKRS 82 (629)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 102
>PF13514 AAA_27: AAA domain
Probab=94.64 E-value=34 Score=49.18 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 000239 443 IKTENLVASLQETLQQSNLMLEKSEEVLA 471 (1804)
Q Consensus 443 ~~~k~~~~~l~~~~~~k~~~l~~~e~~l~ 471 (1804)
.........+...+......+..+...+.
T Consensus 299 ~~~~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 299 RKARQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334444455555554444444444444
No 103
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.46 E-value=21 Score=45.99 Aligned_cols=14 Identities=36% Similarity=0.306 Sum_probs=5.7
Q ss_pred hhHhhHHHHHHHHH
Q 000239 667 LLYVSYQELILCQQ 680 (1804)
Q Consensus 667 ~l~~l~~E~~~l~~ 680 (1804)
.+-++...+..|+.
T Consensus 63 ~~~~~~~~l~~Lqn 76 (716)
T KOG4593|consen 63 LLMQLEDELMQLQN 76 (716)
T ss_pred HHHHHHHHHHHHhh
Confidence 33344444444443
No 104
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.32 E-value=11 Score=42.04 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000239 1041 EEFVSQTSKLTEAYTTIKSLE 1061 (1804)
Q Consensus 1041 ~el~~l~~~l~~~~~~i~~Le 1061 (1804)
..+..+...+......+..|+
T Consensus 125 ~kL~~~~~~l~~~~~ki~~Le 145 (194)
T PF15619_consen 125 RKLSQLEQKLQEKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 105
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.16 E-value=18 Score=43.99 Aligned_cols=9 Identities=22% Similarity=0.080 Sum_probs=3.8
Q ss_pred hhhhhHhhH
Q 000239 664 MQSLLYVSY 672 (1804)
Q Consensus 664 l~~~l~~l~ 672 (1804)
+.+++..++
T Consensus 202 ~V~li~~~~ 210 (622)
T COG5185 202 MVRLIIKLD 210 (622)
T ss_pred HHHHHHHHH
Confidence 344444333
No 106
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.13 E-value=31 Score=46.54 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 695 LSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLRE 732 (1804)
Q Consensus 695 l~~~~~~l~~e~~~l~~e~~~l~~el~~~e~k~~~l~e 732 (1804)
++.++..+..+...+..+...++..++..+.++..++.
T Consensus 214 le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 214 LEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444443333
No 107
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.10 E-value=16 Score=43.16 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 853 INECHDTKTQLEQELGNVKQEASALASELAETQSTMKSL 891 (1804)
Q Consensus 853 ~~ele~~l~~le~ei~~l~~~l~~l~~el~el~~e~~~l 891 (1804)
+..+...+......+...+..+..+...+..+...+..+
T Consensus 26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L 64 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENL 64 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 108
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.89 E-value=30 Score=45.65 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 945 KSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKL 993 (1804)
Q Consensus 945 ~~le~~l~~l~~ei~~l~~e~e~le~~~~~l~~ele~l~~el~~l~~~l 993 (1804)
...+......+..+..+...+..+......+...+..+..++......+
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~ 461 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSI 461 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333333444444445555555555555555555555544444443333
No 109
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.80 E-value=28 Score=44.98 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 796 MEADLIAMKDERNQFEHFLLESNNMLQKVLE 826 (1804)
Q Consensus 796 Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~~ 826 (1804)
|...+..+...++.+...+.-+.-.+..+.+
T Consensus 247 L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~ 277 (739)
T PF07111_consen 247 LLETVQHLQEDRDALQATAELLQVRVQSLTD 277 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444444444444443
No 110
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.53 E-value=27 Score=43.81 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000239 753 LQLDEKNSEIEKLKLNLQ 770 (1804)
Q Consensus 753 ~~ieel~~ele~l~~el~ 770 (1804)
..++.++.+|+.+...+.
T Consensus 164 e~~~~lEk~Le~i~~~l~ 181 (570)
T COG4477 164 EAAPELEKKLENIEEELS 181 (570)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 111
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.04 E-value=13 Score=38.85 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000239 1114 KSMEDALLKAKNDISVLE 1131 (1804)
Q Consensus 1114 ~~l~~~l~~~~~~l~~Le 1131 (1804)
..+...+...+.++..|+
T Consensus 83 ~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 112
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.00 E-value=35 Score=43.64 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 863 LEQELGNVKQEASALASELAETQS 886 (1804)
Q Consensus 863 le~ei~~l~~~l~~l~~el~el~~ 886 (1804)
...+...++..+..+..++...+.
T Consensus 119 ~~~e~~~lk~~lee~~~el~~~k~ 142 (629)
T KOG0963|consen 119 ASEENEELKEELEEVNNELADLKT 142 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhh
Confidence 444455555555555544444333
No 113
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.17 E-value=38 Score=42.11 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 747 DRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQ 782 (1804)
Q Consensus 747 e~~~l~~~ieel~~ele~l~~el~~~e~~~~el~~~ 782 (1804)
+...|+..+++++.+.+.++.+++.....+..+...
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~ 79 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQ 79 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777776666666553
No 114
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.16 E-value=57 Score=44.03 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000239 747 DRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRL 786 (1804)
Q Consensus 747 e~~~l~~~ieel~~ele~l~~el~~~e~~~~el~~~l~~l 786 (1804)
++..++..+.++..+++.+...+..++..+..+..++..+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444
No 115
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.43 E-value=38 Score=40.52 Aligned_cols=38 Identities=13% Similarity=0.311 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 846 VNWIASYINECHDTKTQLEQELGNVKQEASALASELAE 883 (1804)
Q Consensus 846 ~~~l~~~~~ele~~l~~le~ei~~l~~~l~~l~~el~e 883 (1804)
...+...+.+...+...+..++..++..+.++...+.-
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~Kl 104 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKL 104 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 33444444555555555555555444444444433333
No 116
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.11 E-value=39 Score=40.05 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 950 EMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQ 1009 (1804)
Q Consensus 950 ~l~~l~~ei~~l~~e~e~le~~~~~l~~ele~l~~el~~l~~~l~e~~~~i~~Le~~l~~ 1009 (1804)
.+..++..+..+..+.+++...+.....--..+..++..++.++.++...+.+.+..+..
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444443333333333344445555555555555554444444443
No 117
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.84 E-value=69 Score=42.48 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000239 716 QQKDLERSEEKSALLREKLSM 736 (1804)
Q Consensus 716 l~~el~~~e~k~~~l~e~l~~ 736 (1804)
|+..+..+++++..++-+.++
T Consensus 229 Lr~QvrdLtEkLetlR~kR~E 249 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAE 249 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 777788888888777766543
No 118
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.69 E-value=48 Score=40.44 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 000239 951 MSVAKNNMSVL 961 (1804)
Q Consensus 951 l~~l~~ei~~l 961 (1804)
...+...+..+
T Consensus 151 ~~~L~~~~~~L 161 (325)
T PF08317_consen 151 KEGLEENLELL 161 (325)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 119
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.67 E-value=46 Score=38.63 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 946 SLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYK 998 (1804)
Q Consensus 946 ~le~~l~~l~~ei~~l~~e~e~le~~~~~l~~ele~l~~el~~l~~~l~e~~~ 998 (1804)
.+......++.+++.+..++..+.........++..+..++..++.++..+..
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444333333333333334444444444444444433333
No 120
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.61 E-value=43 Score=38.32 Aligned_cols=68 Identities=9% Similarity=0.203 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000239 871 KQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFA 938 (1804)
Q Consensus 871 ~~~l~~l~~el~el~~e~~~le~el~~le~~i~~L~~e~~~le~~~~ele~~l~~~~~el~~~~~~l~ 938 (1804)
.-+++.++..+.+-+..+..-..+...+......|-+....++..+..+.-.+......+..+...+.
T Consensus 38 QfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~ 105 (307)
T PF10481_consen 38 QFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLN 105 (307)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 34444444555554444444444444444444444444444444444444444333333333333333
No 121
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=89.59 E-value=93 Score=42.07 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 526 LESRLAWLKESFYQAKDEANVLLDQL 551 (1804)
Q Consensus 526 le~~i~~L~~~~~~~~~e~~~l~~el 551 (1804)
.+.++..|...+...+.+...|+.++
T Consensus 132 ~e~~~~~l~~~l~~~eken~~Lkye~ 157 (769)
T PF05911_consen 132 AEAEIEDLMARLESTEKENSSLKYEL 157 (769)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666665554
No 122
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=89.44 E-value=1.2e+02 Score=43.26 Aligned_cols=12 Identities=17% Similarity=0.363 Sum_probs=5.6
Q ss_pred ccccCCCCCchh
Q 000239 84 VETDVGSGSNHE 95 (1804)
Q Consensus 84 ~~~~~~~~~~~~ 95 (1804)
..|.+|+|-+-+
T Consensus 35 I~G~tGaGKSti 46 (1047)
T PRK10246 35 ITGPTGAGKTTL 46 (1047)
T ss_pred EECCCCCCHHHH
Confidence 344445554444
No 123
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.13 E-value=84 Score=40.92 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 000239 1261 TAEGFQMRTKILTDTF 1276 (1804)
Q Consensus 1261 ~l~e~~~~~k~L~~~~ 1276 (1804)
.+..++..+..|.+.+
T Consensus 560 ~~e~LqaE~~~lk~~l 575 (716)
T KOG4593|consen 560 RLEELQAELERLKERL 575 (716)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555533
No 124
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=89.09 E-value=73 Score=40.17 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=7.2
Q ss_pred HHHHHHHHHhHhhHHHH
Q 000239 777 SECRDQINRLSNDLDCI 793 (1804)
Q Consensus 777 ~el~~~l~~l~~~~e~~ 793 (1804)
.+....+..+....+++
T Consensus 200 ~~~ee~~~~L~~~~e~I 216 (570)
T COG4477 200 EEAEEHMIALRSIMERI 216 (570)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 125
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.01 E-value=21 Score=40.64 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=66.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 000239 339 ENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIEL 418 (1804)
Q Consensus 339 e~l~~l~~E~~~l~~el~~~~~~l~~l~~el~~~~~el~~l~~~l~~~~eki~~~~~k~~~l~~~~~~lk~eiee~~~el 418 (1804)
.+|..|+..+++|..+...-+..++.++.-+.+..........+...+.-+...+...-..+...+..|..++.-+...+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 35666667777777777777777777777777777777776666666665555554444555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000239 419 EKCLAELQEKSSALQAAELSKEEFIKTENLVASLQETLQ 457 (1804)
Q Consensus 419 e~~~~eie~~~~~l~~~e~l~~el~~~k~~~~~l~~~~~ 457 (1804)
.-+...+......++ .|..++..++.+.+..+....
T Consensus 98 ~~lEgQl~s~Kkqie---~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIE---KLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhc
Confidence 554444444433332 233444455544444444433
No 126
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.95 E-value=52 Score=37.07 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 865 QELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQ 911 (1804)
Q Consensus 865 ~ei~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~~L~~e~~~ 911 (1804)
.++..++.........+.++..+...+..-+..+...+..|......
T Consensus 34 eei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 34 EEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444444444333
No 127
>PRK10869 recombination and repair protein; Provisional
Probab=87.92 E-value=68 Score=42.22 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=42.5
Q ss_pred hhhhcccccchHHHHhhhhhHHHHHHHHhhhhhhhcccCcc---cCcc----cccchhhhHhhHHHHHHHHHHHHHHHHH
Q 000239 226 AYLNSAAGITSEAQIEKDQYVEVVADRMLSYLAMVVYQGEL---MDSS----ISGKISHVEQSTYMLIEKYNQMLYEIYQ 298 (1804)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~nvv~QGdv---m~~~----~~~~i~~lE~~~~~~~ek~~~~~~eie~ 298 (1804)
+|.||+. |+.. .+..+...+..|..|++. |+|. .+|.++ |...+...|..+..++..
T Consensus 105 ~~INg~~-v~~~-----------~l~~l~~~li~ihgQ~~~~~ll~~~~~~~lLD~~~----~~~~~~~~~~~~y~~~~~ 168 (553)
T PRK10869 105 GFINGTP-VPLS-----------QLRELGQLLIQIHGQHAHQLLLKPEHQKTLLDAYA----NETSLLQEMRAAYQLWHQ 168 (553)
T ss_pred EEECCee-ccHH-----------HHHHHHHhhhheeCcChHHHhcCHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHH
Confidence 6788765 3433 233344455788889876 7776 555555 656778888877777777
Q ss_pred HHhhhcCCC
Q 000239 299 LGQCLSKPD 307 (1804)
Q Consensus 299 l~~~l~~~~ 307 (1804)
+...+..+.
T Consensus 169 ~~~~l~~l~ 177 (553)
T PRK10869 169 SCRDLAQHQ 177 (553)
T ss_pred HHHHHHHHH
Confidence 666665543
No 128
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.87 E-value=5.9 Score=44.39 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1114 KSMEDALLKAKNDISVLEGEKRISDQEVSALNS 1146 (1804)
Q Consensus 1114 ~~l~~~l~~~~~~l~~Le~~~~~le~e~~~l~~ 1146 (1804)
..+.+++..++-.+..++..+..++.+-..|-.
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444333333
No 129
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.72 E-value=69 Score=41.69 Aligned_cols=8 Identities=13% Similarity=0.148 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 000239 852 YINECHDT 859 (1804)
Q Consensus 852 ~~~ele~~ 859 (1804)
++..++.+
T Consensus 169 ql~~~~~~ 176 (498)
T TIGR03007 169 QIKTYEKK 176 (498)
T ss_pred HHHHHHHH
Confidence 33333333
No 130
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.94 E-value=83 Score=38.38 Aligned_cols=14 Identities=14% Similarity=0.019 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 000239 756 DEKNSEIEKLKLNL 769 (1804)
Q Consensus 756 eel~~ele~l~~el 769 (1804)
.++...|..-+..+
T Consensus 78 ~EL~~~I~egr~~~ 91 (325)
T PF08317_consen 78 RELKKYISEGRQIF 91 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 131
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.48 E-value=1.1e+02 Score=38.58 Aligned_cols=11 Identities=9% Similarity=0.235 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 000239 868 GNVKQEASALA 878 (1804)
Q Consensus 868 ~~l~~~l~~l~ 878 (1804)
..+..++..+.
T Consensus 84 ~~l~~~~~~l~ 94 (423)
T TIGR01843 84 AELESQVLRLE 94 (423)
T ss_pred HHHHHHHHHHH
Confidence 33333433333
No 132
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.18 E-value=71 Score=35.96 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 000239 867 LGNVKQEASALASE 880 (1804)
Q Consensus 867 i~~l~~~l~~l~~e 880 (1804)
...+...+..+...
T Consensus 25 ~~~l~~k~~e~~~~ 38 (207)
T PF05010_consen 25 EQELKKKYEELHKE 38 (207)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333333333
No 133
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.98 E-value=15 Score=37.54 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 000239 747 DRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIAMKDERNQF 810 (1804)
Q Consensus 747 e~~~l~~~ieel~~ele~l~~el~~~e~~~~el~~~l~~l~~~~e~~~~Le~ei~~l~~~~~e~ 810 (1804)
-+.++...|..++.++..++.++..+..+...+..+|-.+....+.+......+..++....++
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l 80 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEEL 80 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666665555544444444444444333333
No 134
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.92 E-value=12 Score=42.02 Aligned_cols=102 Identities=17% Similarity=0.191 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1037 EQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSM 1116 (1804)
Q Consensus 1037 e~l~~el~~l~~~l~~~~~~i~~Le~~l~~le~~l~~l~~el~~~~~~~~~le~el~~l~~el~~~~~~l~~~~~~l~~l 1116 (1804)
..++.++..+......+...+..+...+..+...+......+..+...+..+...+..+..++......+..+..++..+
T Consensus 77 ~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L 156 (194)
T PF08614_consen 77 AKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL 156 (194)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333334444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000239 1117 EDALLKAKNDISVLEGEKRISD 1138 (1804)
Q Consensus 1117 ~~~l~~~~~~l~~Le~~~~~le 1138 (1804)
.-++..++..+..++.++..+-
T Consensus 157 ~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 157 QLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554443
No 135
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.41 E-value=1.4e+02 Score=38.80 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000239 794 RKMEADLIAMKDERNQFEHFLLE 816 (1804)
Q Consensus 794 ~~Le~ei~~l~~~~~e~e~~L~e 816 (1804)
.+++.++..++.+....+..+..
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554443
No 136
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.37 E-value=96 Score=36.79 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=6.2
Q ss_pred HHhhhhhHhhHHH
Q 000239 662 QTMQSLLYVSYQE 674 (1804)
Q Consensus 662 ~~l~~~l~~l~~E 674 (1804)
..+...+..|+.+
T Consensus 23 ~~l~~~~~sL~qe 35 (310)
T PF09755_consen 23 EQLRKRIESLQQE 35 (310)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 137
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.34 E-value=1.2e+02 Score=41.95 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000239 885 QSTMKSLEDALSVAEDKITQ 904 (1804)
Q Consensus 885 ~~e~~~le~el~~le~~i~~ 904 (1804)
..++..++.++...+.++..
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~ 219 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAA 219 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 138
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.24 E-value=69 Score=34.25 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=6.0
Q ss_pred HHHHHHHhh
Q 000239 638 KCIGKIREQ 646 (1804)
Q Consensus 638 ~~~~~Lk~~ 646 (1804)
.|+.||-..
T Consensus 2 ~~~~yiN~~ 10 (151)
T PF11559_consen 2 NAIEYINQQ 10 (151)
T ss_pred hHHHHHHHH
Confidence 467777775
No 139
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=82.96 E-value=1.3e+02 Score=37.22 Aligned_cols=12 Identities=8% Similarity=0.542 Sum_probs=5.6
Q ss_pred ChhhHHHHHHHH
Q 000239 631 DPTAIISKCIGK 642 (1804)
Q Consensus 631 d~~~~a~~~~~~ 642 (1804)
+.|..+..|+..
T Consensus 155 ~kDql~~E~vrq 166 (527)
T PF15066_consen 155 NKDQLAHECVRQ 166 (527)
T ss_pred cchhhchhhhhC
Confidence 334455555444
No 140
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=82.83 E-value=73 Score=34.27 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 973 AAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAM 1016 (1804)
Q Consensus 973 ~~l~~ele~l~~el~~l~~~l~e~~~~i~~Le~~l~~~e~~l~~ 1016 (1804)
..+..++..+..++..++..+......++.|+.....++..+..
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~e 66 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAE 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555444444433
No 141
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=82.07 E-value=1.8e+02 Score=38.17 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000239 1032 AVLELEQVREEFVSQTSKL 1050 (1804)
Q Consensus 1032 le~ele~l~~el~~l~~~l 1050 (1804)
+..-|..++..++.+.-.+
T Consensus 304 ~q~LL~~WREKVFaLmVQL 322 (739)
T PF07111_consen 304 CQQLLSRWREKVFALMVQL 322 (739)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445556666666665444
No 142
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.33 E-value=71 Score=39.30 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHhhc
Q 000239 633 TAIISKCIGKIREQT 647 (1804)
Q Consensus 633 ~~~a~~~~~~Lk~~~ 647 (1804)
..+++..+..||..|
T Consensus 70 n~~~~~Il~~lr~~g 84 (359)
T PF10498_consen 70 NATISNILDELRKLG 84 (359)
T ss_pred HHHHHHHHHHHHccC
Confidence 345555566666554
No 143
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.94 E-value=1e+02 Score=34.70 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 000239 284 MLIEKYNQMLYEIYQLGQ 301 (1804)
Q Consensus 284 ~~~ek~~~~~~eie~l~~ 301 (1804)
.|...+.++.+|+.++..
T Consensus 24 ~ykq~f~~~reEl~EFQe 41 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQE 41 (333)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344444444444444433
No 144
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.86 E-value=56 Score=33.43 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 749 ENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVL 825 (1804)
Q Consensus 749 ~~l~~~ieel~~ele~l~~el~~~e~~~~el~~~l~~l~~~~e~~~~Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~ 825 (1804)
..+..++..+..++.++....+.+..++-.+....+.+.....++..|..++..+..+.+.+-..+-++...+..+.
T Consensus 26 r~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~ 102 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELR 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34444444444444444444444444444455555555445555555666666666666555555554444443333
No 145
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.26 E-value=1.7e+02 Score=36.88 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 000239 999 TIKSLEDSLAQVEANVAMLTE 1019 (1804)
Q Consensus 999 ~i~~Le~~l~~~e~~l~~l~~ 1019 (1804)
.+..++-.+.+...+|..+..
T Consensus 381 ~Lk~leIalEqkkEec~kme~ 401 (654)
T KOG4809|consen 381 KLKSLEIALEQKKEECSKMEA 401 (654)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333
No 146
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=80.07 E-value=1.6e+02 Score=36.44 Aligned_cols=89 Identities=16% Similarity=0.276 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 851 SYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKS---LEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAI 927 (1804)
Q Consensus 851 ~~~~ele~~l~~le~ei~~l~~~l~~l~~el~el~~e~~~---le~el~~le~~i~~L~~e~~~le~~~~ele~~l~~~~ 927 (1804)
..+..|......-+..|..+.-.--.+++.+.+++..+.. +-+-|.+++..+..|-+.+-.+--...++...++.+.
T Consensus 317 EvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLq 396 (527)
T PF15066_consen 317 EVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQ 396 (527)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHH
Confidence 3344444443334444444444444444444444443322 3344556666666665554444333444444444444
Q ss_pred HHHHHHHhHHHH
Q 000239 928 EEAHIQTSKFAE 939 (1804)
Q Consensus 928 ~el~~~~~~l~e 939 (1804)
..+......+.+
T Consensus 397 e~la~tqk~LqE 408 (527)
T PF15066_consen 397 EALANTQKHLQE 408 (527)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 147
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.78 E-value=1.8e+02 Score=36.69 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000239 534 KESFYQAKDEANVLLDQL 551 (1804)
Q Consensus 534 ~~~~~~~~~e~~~l~~el 551 (1804)
...|..+++++..+..++
T Consensus 193 QVEyEglkheikRleEe~ 210 (772)
T KOG0999|consen 193 QVEYEGLKHEIKRLEEET 210 (772)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 344555555555555554
No 148
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.48 E-value=1.6e+02 Score=37.70 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=9.2
Q ss_pred ccccccccccccC
Q 000239 1774 EDKGHVFKSLNTL 1786 (1804)
Q Consensus 1774 ~~~~~~~~~~~~~ 1786 (1804)
-++..||+|++-|
T Consensus 848 a~~~sgfess~~~ 860 (861)
T KOG1899|consen 848 AGDNSGFESSNVS 860 (861)
T ss_pred cccccccccCCCC
Confidence 4566788888755
No 149
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=79.27 E-value=2.1e+02 Score=37.31 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1106 LADAHTTIKSMEDALLKAKNDISV 1129 (1804)
Q Consensus 1106 l~~~~~~l~~l~~~l~~~~~~l~~ 1129 (1804)
++.+..+...+.-.+..+...+..
T Consensus 408 lE~l~~ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 408 LESLGSEKNALRLQLERLETQLKE 431 (511)
T ss_pred HHHHHhhhhhccccHHHHHHHHHh
Confidence 444444555555555555555553
No 150
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=78.28 E-value=3.2e+02 Score=38.86 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=6.1
Q ss_pred hhhhHhHHHHHHH
Q 000239 1679 DDLTTKVDLLEES 1691 (1804)
Q Consensus 1679 ~DL~~y~kALD~a 1691 (1804)
.|++.-.+.|-++
T Consensus 1003 sDie~v~~iL~ea 1015 (1109)
T PRK10929 1003 ANSEEVTEILLTA 1015 (1109)
T ss_pred CCHHHHHHHHHHH
Confidence 3455444444443
No 151
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.23 E-value=2.4e+02 Score=37.36 Aligned_cols=7 Identities=14% Similarity=0.410 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 000239 605 DHMVRVL 611 (1804)
Q Consensus 605 ~~l~~~l 611 (1804)
+-++++|
T Consensus 36 S~ll~al 42 (563)
T TIGR00634 36 SMIIDAL 42 (563)
T ss_pred HHHHHHH
Confidence 3333333
No 152
>PRK11281 hypothetical protein; Provisional
Probab=78.06 E-value=3.3e+02 Score=38.86 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=5.3
Q ss_pred hhhHhHHHHHHH
Q 000239 1680 DLTTKVDLLEES 1691 (1804)
Q Consensus 1680 DL~~y~kALD~a 1691 (1804)
|+++-.+.|-.+
T Consensus 1007 Di~~v~~iL~ea 1018 (1113)
T PRK11281 1007 DLEKVRELLLQA 1018 (1113)
T ss_pred CHHHHHHHHHHH
Confidence 444444444443
No 153
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=78.03 E-value=1.4e+02 Score=34.78 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 000239 1263 EGFQMRTKILTDTFEHFS 1280 (1804)
Q Consensus 1263 ~e~~~~~k~L~~~~~~l~ 1280 (1804)
..++.+++.|..+|..+.
T Consensus 185 k~lq~QL~~L~~EL~~~k 202 (246)
T PF00769_consen 185 KRLQEQLKELKSELEQLK 202 (246)
T ss_dssp HHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 346667777777776543
No 154
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.93 E-value=1.5e+02 Score=38.54 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=7.2
Q ss_pred ccccccchHHHHH
Q 000239 1636 SSGSKGLLAVLEK 1648 (1804)
Q Consensus 1636 ~~~~~gel~~l~~ 1648 (1804)
-+|+.|-+-.|+.
T Consensus 784 eSGVHGaLlaLde 796 (916)
T KOG0249|consen 784 ESGVHGALLALDE 796 (916)
T ss_pred hhcccceeeeecc
Confidence 4556665555554
No 155
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.76 E-value=2.7e+02 Score=37.76 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=33.4
Q ss_pred cChHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 656 ADSEMLQTMQSLLYVSYQELILCQQILEEDALVRLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLS 735 (1804)
Q Consensus 656 ~~~e~~~~l~~~l~~l~~E~~~l~~~le~~~~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~el~~~e~k~~~l~e~l~ 735 (1804)
...+.++.|...+.+++.+ .+.+-...+..+ ...+..+...+...-.++..++.++..+......|.+++.
T Consensus 533 ~~~E~l~lL~~a~~vlree------Yi~~~~~ar~ei---~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e 603 (717)
T PF10168_consen 533 SPQECLELLSQATKVLREE------YIEKQDLAREEI---QRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYE 603 (717)
T ss_pred CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566667666666655 122211222222 2333444444444444444455555444444444444444
Q ss_pred HHH
Q 000239 736 MAV 738 (1804)
Q Consensus 736 ~~~ 738 (1804)
.+.
T Consensus 604 ~a~ 606 (717)
T PF10168_consen 604 EAK 606 (717)
T ss_pred HHH
Confidence 333
No 156
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=76.38 E-value=1.4e+02 Score=33.77 Aligned_cols=46 Identities=7% Similarity=0.072 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 691 QLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSM 736 (1804)
Q Consensus 691 ~~~~l~~~~~~l~~e~~~l~~e~~~l~~el~~~e~k~~~l~e~l~~ 736 (1804)
.|..|...-.++........+.-+.+.-.+...+.+.+++...+..
T Consensus 109 ~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~ 154 (330)
T KOG2991|consen 109 DITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQY 154 (330)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444455555555555555444443
No 157
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.92 E-value=1.9e+02 Score=34.88 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000239 946 SLEDEMSVAKNNMSVLICEK 965 (1804)
Q Consensus 946 ~le~~l~~l~~ei~~l~~e~ 965 (1804)
.+.+.+.++++++..++..+
T Consensus 90 ~Lrqkl~E~qGD~KlLR~~l 109 (319)
T PF09789_consen 90 ELRQKLNEAQGDIKLLREKL 109 (319)
T ss_pred HHHHHHHHHhchHHHHHHHH
Confidence 33333344444444443333
No 158
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=75.74 E-value=1.5e+02 Score=33.54 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=10.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000239 1078 NNVLQVGKTTLENELQMLKDEAGSQAV 1104 (1804)
Q Consensus 1078 l~~~~~~~~~le~el~~l~~el~~~~~ 1104 (1804)
+..+..+...+...+.++..+..++..
T Consensus 102 l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 102 LKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444333333
No 159
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.64 E-value=1.1e+02 Score=35.23 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 874 ASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQ 911 (1804)
Q Consensus 874 l~~l~~el~el~~e~~~le~el~~le~~i~~L~~e~~~ 911 (1804)
|.++..+.+.|..+...+..+|.....++..++..+..
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443333333
No 160
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=75.40 E-value=1.2e+02 Score=32.59 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 844 EKVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGK 916 (1804)
Q Consensus 844 ~k~~~l~~~~~ele~~l~~le~ei~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~~L~~e~~~le~~~ 916 (1804)
..+.........++..+..+..+-..++...+.++..+..+...+...+.-+....-.+.-|...+..+...+
T Consensus 77 ~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~ 149 (159)
T PF05384_consen 77 EDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQI 149 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3556666777778888888887778888888888888877777777776666666666666666555544333
No 161
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.14 E-value=3.5e+02 Score=37.17 Aligned_cols=38 Identities=8% Similarity=0.096 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 000239 796 MEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIIL 833 (1804)
Q Consensus 796 Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~~~i~el~~ 833 (1804)
+...+..++...+.....+......|.+.++.+.....
T Consensus 323 ~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~ 360 (1072)
T KOG0979|consen 323 KKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETED 360 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 33344444444444445555555555555555555444
No 162
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.21 E-value=1.6e+02 Score=32.88 Aligned_cols=9 Identities=0% Similarity=0.187 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 000239 867 LGNVKQEAS 875 (1804)
Q Consensus 867 i~~l~~~l~ 875 (1804)
|-.++.++.
T Consensus 33 iv~Lr~ql~ 41 (202)
T PF06818_consen 33 IVSLRAQLR 41 (202)
T ss_pred HHHHHHHHH
Confidence 333333333
No 163
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.20 E-value=2.2e+02 Score=34.45 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 000239 978 ELEQVREE 985 (1804)
Q Consensus 978 ele~l~~e 985 (1804)
....+..+
T Consensus 180 ~~~~L~~e 187 (312)
T smart00787 180 RKDALEEE 187 (312)
T ss_pred HHHHHHHH
Confidence 33333333
No 164
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=72.54 E-value=1.1e+02 Score=37.65 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000239 880 ELAETQS 886 (1804)
Q Consensus 880 el~el~~ 886 (1804)
.|.++..
T Consensus 242 ~L~kl~~ 248 (359)
T PF10498_consen 242 QLDKLQQ 248 (359)
T ss_pred HHHHHHH
Confidence 3333333
No 165
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.49 E-value=58 Score=41.62 Aligned_cols=87 Identities=20% Similarity=0.344 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 688 VRLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKL 767 (1804)
Q Consensus 688 ~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~el~~~e~k~~~l~e~l~~~~~k~k~l~~e~~~l~~~ieel~~ele~l~~ 767 (1804)
+...+..+...+..+..++..|+..+.++...+..++.++..++..+.... .....+..+...|..|..
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~-----------~~~rei~~~~~~I~~L~~ 488 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKV-----------RKDREIRARDRRIERLEK 488 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHH
Confidence 344555556667777777777777777777777888887777776665322 233344444555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000239 768 NLQEQESTISECRDQINR 785 (1804)
Q Consensus 768 el~~~e~~~~el~~~l~~ 785 (1804)
.+.+....+..|++.+..
T Consensus 489 ~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 489 ELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555544444444444443
No 166
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=72.00 E-value=3.2e+02 Score=35.83 Aligned_cols=7 Identities=14% Similarity=0.358 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 000239 1554 SIINSAT 1560 (1804)
Q Consensus 1554 ~~~~~~~ 1560 (1804)
.++++|.
T Consensus 717 kmvdsFH 723 (916)
T KOG0249|consen 717 KMVDSFH 723 (916)
T ss_pred HHHHHHH
Confidence 3444444
No 167
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.66 E-value=49 Score=42.26 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 750 NLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIAMKDERNQFEHFLLESNNMLQK 823 (1804)
Q Consensus 750 ~l~~~ieel~~ele~l~~el~~~e~~~~el~~~l~~l~~~~e~~~~Le~ei~~l~~~~~e~e~~L~e~e~~l~~ 823 (1804)
.+...++.++.++..|+..+..++..+..|+.+|+.+......-.+...++..+..++..++..|.+....+..
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444333322222233334444444444444444444433333
No 168
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.72 E-value=58 Score=30.06 Aligned_cols=62 Identities=24% Similarity=0.301 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 000239 329 NLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKL 390 (1804)
Q Consensus 329 ~lk~~~~~~~e~l~~l~~E~~~l~~el~~~~~~l~~l~~el~~~~~el~~l~~~l~~~~eki 390 (1804)
.++.++....+.+..|..++..|..+...+......+..+...+..+-+.+..++..+-.++
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555666666666667777777666666666666666666666655555555555554443
No 169
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=69.67 E-value=2.2e+02 Score=33.04 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 797 EADLIAMKDERNQFEHFLLESNNMLQKV 824 (1804)
Q Consensus 797 e~ei~~l~~~~~e~e~~L~e~e~~l~~l 824 (1804)
......|...+..+-..+..+...+..+
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 3334444444444444444444444444
No 170
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=69.52 E-value=4e+02 Score=35.97 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.7
Q ss_pred HHHHHhh
Q 000239 1270 KILTDTF 1276 (1804)
Q Consensus 1270 k~L~~~~ 1276 (1804)
..+..++
T Consensus 727 ~~~~eel 733 (980)
T KOG0980|consen 727 NQLGEEL 733 (980)
T ss_pred HHHhHHh
Confidence 3333333
No 171
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.40 E-value=1.4e+02 Score=34.54 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 866 ELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQV 912 (1804)
Q Consensus 866 ei~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~~L~~e~~~l 912 (1804)
-|.+++..+.+....+.+ -+.+|.+++.++.++++...+-
T Consensus 69 ~iRHLkakLkes~~~l~d-------RetEI~eLksQL~RMrEDWIEE 108 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHD-------RETEIDELKSQLARMREDWIEE 108 (305)
T ss_pred HHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555554444443 3344555555555555554443
No 172
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=69.31 E-value=1.8e+02 Score=31.95 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 000239 909 KRQVEVGKKNVEEEL 923 (1804)
Q Consensus 909 ~~~le~~~~ele~~l 923 (1804)
+..+......+...+
T Consensus 44 FeqLkien~~l~~kI 58 (177)
T PF13870_consen 44 FEQLKIENQQLNEKI 58 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 173
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=68.54 E-value=3.9e+02 Score=35.42 Aligned_cols=10 Identities=10% Similarity=0.179 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 000239 956 NNMSVLICEK 965 (1804)
Q Consensus 956 ~ei~~l~~e~ 965 (1804)
.+++.+..++
T Consensus 189 ~eld~L~~ql 198 (563)
T TIGR00634 189 QRLDFLQFQL 198 (563)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 174
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=68.46 E-value=2.8e+02 Score=34.92 Aligned_cols=26 Identities=19% Similarity=0.032 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 957 NMSVLICEKEEAQASGAAAVVELEQV 982 (1804)
Q Consensus 957 ei~~l~~e~e~le~~~~~l~~ele~l 982 (1804)
+...++.++.+.......++.++..+
T Consensus 276 E~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 276 ELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444443
No 175
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=67.41 E-value=98 Score=28.81 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1049 KLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHT 1111 (1804)
Q Consensus 1049 ~l~~~~~~i~~Le~~l~~le~~l~~l~~el~~~~~~~~~le~el~~l~~el~~~~~~l~~~~~ 1111 (1804)
++..+...|.-|.-++..++.+-..+..+...+......+..+...++.+...+..++..+-+
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444555555555555555555555544433
No 176
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.88 E-value=1.8e+02 Score=31.01 Aligned_cols=9 Identities=11% Similarity=0.002 Sum_probs=3.8
Q ss_pred HHhhhhccc
Q 000239 826 ETVDRIILP 834 (1804)
Q Consensus 826 ~~i~el~~~ 834 (1804)
..+...|.+
T Consensus 9 ~~L~s~G~~ 17 (151)
T PF11559_consen 9 QQLLSRGYP 17 (151)
T ss_pred HHHHHCCCC
Confidence 334444443
No 177
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.40 E-value=63 Score=36.46 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 000239 528 SRLAWLKESFYQAKDEANVLLDQLNRMKEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYE 591 (1804)
Q Consensus 528 ~~i~~L~~~~~~~~~e~~~l~~el~~~~~~~~~~~~~l~~~l~~~~~e~e~L~~el~~l~~e~~ 591 (1804)
..+..+...+..++.+++.+..+.......+...+.........+..+.+.|.+++..++.+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433333222333333333333333333334444444444433333
No 178
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.58 E-value=3.3e+02 Score=33.52 Aligned_cols=6 Identities=50% Similarity=0.329 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000239 1032 AVLELE 1037 (1804)
Q Consensus 1032 le~ele 1037 (1804)
+.+++.
T Consensus 379 lrkele 384 (502)
T KOG0982|consen 379 LRKELE 384 (502)
T ss_pred HHHHHH
Confidence 333333
No 179
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=65.43 E-value=1.7e+02 Score=34.20 Aligned_cols=174 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhchhHHHHHHHHHHHHhhhHHHH
Q 000239 1552 LFSIINSATKLPHQIDLLEHGKQELQSILSTQTAEIEHLKGEVETH----------LRNKPDLEKMKIEFAEFTFGLEKI 1621 (1804)
Q Consensus 1552 L~~~~~~~~~l~~ei~~l~~ei~~l~~~i~~~~~ei~~l~~el~~~----------~~~~~~n~~~r~~l~e~~~~le~~ 1621 (1804)
...+...-.++..+|+-|+.+..-|.+-....-.++.+|.+.+..+ -+..++.++-..+|.+....|+++
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhccCchhhhhh------------------------ccccccchHHHHHHHHHHHHHhh---hhHHHHHhhcchhhhh
Q 000239 1622 VNMLESNEFVVNQK------------------------SSGSKGLLAVLEKQIMTLHSDAE---NSKSKVQELGNKLLES 1674 (1804)
Q Consensus 1622 i~~l~~~~a~~d~~------------------------~~~~~gel~~l~~qi~~l~~E~k---~~~~~~~~~~iklqt~ 1674 (1804)
+.. -.....+. +--+.|+|.+|.+.|.--..--+ .++++|+
T Consensus 82 LAR---aKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~k--------- 149 (351)
T PF07058_consen 82 LAR---AKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLK--------- 149 (351)
T ss_pred HHH---hhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred hhhhhhhhHhHHHHHHHhhccCCCchhhhhhhhcccCCCCCCcccccccccccCcCCCccccCC------chhhhhhhhc
Q 000239 1675 QKEVDDLTTKVDLLEESLHGRRDQPEIVQERSIFEASSLPTGSEISEVEDVMQGTLGQKTISPV------PSAAHTRTMR 1748 (1804)
Q Consensus 1675 ~~~~~DL~~y~kALD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 1748 (1804)
-==+.|.+.+-++...--|...+++|..+|..-..+-. ||-.-.-++|. .++.|.|+..
T Consensus 150 ------------lRLK~LEe~Lk~~~s~~~~~~~~~~s~~~gps~r~~lg---g~~~~~~~~sng~~~kr~~~sq~r~s~ 214 (351)
T PF07058_consen 150 ------------LRLKVLEEGLKGSSSNSSRPTSEGKSPSNGPSRRQSLG---GAENFSKLSSNGGLSKRRPSSQPRSSL 214 (351)
T ss_pred ------------HHHHHHHhhccCCCCCCCCCCcCCCCCCCCCccCcCCC---CccccccccCCCccccCCCcccccccc
Q ss_pred cCCC
Q 000239 1749 KGST 1752 (1804)
Q Consensus 1749 ~~~~ 1752 (1804)
-|++
T Consensus 215 ~~~~ 218 (351)
T PF07058_consen 215 SGSS 218 (351)
T ss_pred cccc
No 180
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.63 E-value=1.2e+02 Score=27.95 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 940 ACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLT 994 (1804)
Q Consensus 940 l~~~i~~le~~l~~l~~ei~~l~~e~e~le~~~~~l~~ele~l~~el~~l~~~l~ 994 (1804)
+...+..+-+.+..++.++..+..+...+...+..+..+...++.+...+...+.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555554555555555555555555554443
No 181
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.54 E-value=69 Score=35.35 Aligned_cols=66 Identities=23% Similarity=0.265 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 853 INECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKN 918 (1804)
Q Consensus 853 ~~ele~~l~~le~ei~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~~L~~e~~~le~~~~e 918 (1804)
+.++..++.+...+-..+...+..++.++++.+.++..++.+.+.+...+..+..++..++....+
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444333333
No 182
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.01 E-value=3.8e+02 Score=33.31 Aligned_cols=16 Identities=6% Similarity=0.057 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 000239 844 EKVNWIASYINECHDT 859 (1804)
Q Consensus 844 ~k~~~l~~~~~ele~~ 859 (1804)
++++.+...+.....+
T Consensus 293 ayLaKL~~~l~~~~~~ 308 (521)
T KOG1937|consen 293 AYLAKLMGKLAELNKQ 308 (521)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3343333333333333
No 183
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=62.01 E-value=7.7e+02 Score=36.52 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 000239 281 STYMLIEKYNQMLYEIYQLGQCLSKPD 307 (1804)
Q Consensus 281 ~~~~~~ek~~~~~~eie~l~~~l~~~~ 307 (1804)
..+.-.+.|..+...++.+...+..+.
T Consensus 224 ~l~e~~~~~~~~~~~le~l~~~~~~l~ 250 (1353)
T TIGR02680 224 DVADALEQLDEYRDELERLEALERALR 250 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554443
No 184
>PLN02939 transferase, transferring glycosyl groups
Probab=61.98 E-value=6.2e+02 Score=35.41 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC
Q 000239 408 KQSLADKTIELEKCLAELQEKSSALQAAELSKEEFIKTENLVASLQETLQQSNLMLEKSEEVLAQID 474 (1804)
Q Consensus 408 k~eiee~~~ele~~~~eie~~~~~l~~~e~l~~el~~~k~~~~~l~~~~~~k~~~l~~~e~~l~~~~ 474 (1804)
..++.-++.+.--++..++.+...+.......+-+..+.++..-|...+.+.++.+-..+.-++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLS 291 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 3445555555555555666666666655555555666666666666666666655544444444433
No 185
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=61.93 E-value=4.8e+02 Score=34.11 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000239 857 HDTKTQLEQELGNVKQEASAL 877 (1804)
Q Consensus 857 e~~l~~le~ei~~l~~~l~~l 877 (1804)
...+.++..++..++..+..+
T Consensus 115 k~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 115 KIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 186
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=61.68 E-value=3.1e+02 Score=31.85 Aligned_cols=6 Identities=17% Similarity=0.540 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000239 1036 LEQVRE 1041 (1804)
Q Consensus 1036 le~l~~ 1041 (1804)
+..|+.
T Consensus 201 l~~Lq~ 206 (240)
T PF12795_consen 201 LQALQN 206 (240)
T ss_pred HHHHHH
Confidence 333333
No 187
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.46 E-value=67 Score=36.22 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 000239 1257 CFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQN 1334 (1804)
Q Consensus 1257 ~lr~~l~e~~~~~k~L~~~~~~l~~~~d~~i~~l~~~lq~~e~~~~~~~~e~e~lk~~l~~le~e~~~le~~l~~le~ 1334 (1804)
.++..+..++.++..++.++.++....++....+...+.........+..+...|+.++..+..+...++...+.++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888887666555554445555555555555555566666666665555555555555555444
No 188
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=60.07 E-value=2.4e+02 Score=30.13 Aligned_cols=33 Identities=9% Similarity=-0.038 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhccCCCCCCCcChHHHHHhhhhh
Q 000239 636 ISKCIGKIREQTCASSDTSGADSEMLQTMQSLL 668 (1804)
Q Consensus 636 a~~~~~~Lk~~~~~l~~~~~~~~e~~~~l~~~l 668 (1804)
+.-.++|+-.+..|.+.+.+.++-.-+.|+-++
T Consensus 9 e~ivl~~~~eqNrP~ssq~v~~~lq~e~lgkta 41 (201)
T KOG4603|consen 9 EGIVLRYLQEQNRPYSSQDVFGNLQREHLGKTA 41 (201)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHhccchH
Confidence 445688888888888765555433322244444
No 189
>PRK11281 hypothetical protein; Provisional
Probab=59.36 E-value=7.4e+02 Score=35.51 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000239 761 EIEKLKLNLQEQESTISECRDQINRL 786 (1804)
Q Consensus 761 ele~l~~el~~~e~~~~el~~~l~~l 786 (1804)
.+..+...+.+.+..++.+..++..+
T Consensus 129 ~L~q~~~~Lq~~Q~~La~~NsqLi~~ 154 (1113)
T PRK11281 129 RLAQTLDQLQNAQNDLAEYNSQLVSL 154 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333344444444444433
No 190
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=59.17 E-value=4.2e+02 Score=32.61 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000239 748 RENLKLQLDEKNSEIEKLKLNLQ 770 (1804)
Q Consensus 748 ~~~l~~~ieel~~ele~l~~el~ 770 (1804)
...++..+......+.+...-+.
T Consensus 265 ~~~l~~~~~~~~~kl~rA~~Li~ 287 (344)
T PF12777_consen 265 KQELEEEIEETERKLERAEKLIS 287 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccHHHHHh
Confidence 33444444444444444444333
No 191
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=58.94 E-value=2.8e+02 Score=30.49 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000239 1035 ELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAG 1100 (1804)
Q Consensus 1035 ele~l~~el~~l~~~l~~~~~~i~~Le~~l~~le~~l~~l~~el~~~~~~~~~le~el~~l~~el~ 1100 (1804)
.++.-..++..+..........+.....++..+......+...+......+..+...+..+..+..
T Consensus 57 kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 57 KIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444444444444444444444433
No 192
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=57.97 E-value=1.1e+02 Score=33.85 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1095 LKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNAC 1151 (1804)
Q Consensus 1095 l~~el~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~Le~~~~~le~e~~~l~~~l~~l 1151 (1804)
++.+...+..++..+.++....++.+..+......|+..+..+..++..+..++..+
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 333333344444444445555555555555555555555555555555565555544
No 193
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=56.93 E-value=7e+02 Score=34.47 Aligned_cols=55 Identities=33% Similarity=0.311 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 000239 701 VASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQL 755 (1804)
Q Consensus 701 ~l~~e~~~l~~e~~~l~~el~~~e~k~~~l~e~l~~~~~k~k~l~~e~~~l~~~i 755 (1804)
....++..+..+++.++..+..++.+....+..++....+...+..++..+...+
T Consensus 633 ~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~ 687 (1072)
T KOG0979|consen 633 RIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSEL 687 (1072)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444555555566666666666666555555555554444433333444444433
No 194
>PF14992 TMCO5: TMCO5 family
Probab=56.74 E-value=3e+02 Score=32.43 Aligned_cols=29 Identities=7% Similarity=0.266 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000239 803 MKDERNQFEHFLLESNNMLQKVLETVDRI 831 (1804)
Q Consensus 803 l~~~~~e~e~~L~e~e~~l~~l~~~i~el 831 (1804)
+......+-..+...++.++++...|...
T Consensus 16 ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~ 44 (280)
T PF14992_consen 16 LDEANQSLLQKIQEKEGAIQSLEREITKM 44 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555566666665555554
No 195
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=55.37 E-value=5.5e+02 Score=32.76 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 873 EASALASELAETQSTMKSLEDALSV 897 (1804)
Q Consensus 873 ~l~~l~~el~el~~e~~~le~el~~ 897 (1804)
....+..++..++.++...+..+..
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 196
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=55.23 E-value=1.3e+02 Score=27.95 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 748 RENLKLQLDEKNSEIEKLKLNLQEQESTISECR 780 (1804)
Q Consensus 748 ~~~l~~~ieel~~ele~l~~el~~~e~~~~el~ 780 (1804)
+.+|+..+.+.+..+..+...+...+..+..++
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 197
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.55 E-value=5.2e+02 Score=32.21 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 707 GALKEEKESQQKDLERSEEKSALLREKLS 735 (1804)
Q Consensus 707 ~~l~~e~~~l~~el~~~e~k~~~l~e~l~ 735 (1804)
..+..+....--.+..++++...+++..+
T Consensus 244 eel~ae~kqh~v~~~ales~~sq~~e~~s 272 (521)
T KOG1937|consen 244 EELQAEYKQHLVEYKALESKRSQFEEQNS 272 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555555555556665555554443
No 198
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=54.48 E-value=5.8e+02 Score=32.76 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000239 709 LKEEKESQQKDLERSEEKSALLR 731 (1804)
Q Consensus 709 l~~e~~~l~~el~~~e~k~~~l~ 731 (1804)
....++.|-..+.+..+++..|.
T Consensus 300 stes~e~L~qqV~qs~EKIa~LE 322 (518)
T PF10212_consen 300 STESREGLAQQVQQSQEKIAKLE 322 (518)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554
No 199
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=52.94 E-value=1.9e+02 Score=26.89 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1033 VLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTE 1076 (1804)
Q Consensus 1033 e~ele~l~~el~~l~~~l~~~~~~i~~Le~~l~~le~~l~~l~~ 1076 (1804)
...+..|..+-..+...-....+.|..|+..+...+..+..+..
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~ 54 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKK 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555555444444444443333
No 200
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=52.93 E-value=4.3e+02 Score=30.81 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000239 852 YINECHDTKTQLEQELGNVKQE 873 (1804)
Q Consensus 852 ~~~ele~~l~~le~ei~~l~~~ 873 (1804)
.+.+-+..+.+-+.+|..++.+
T Consensus 76 kLkes~~~l~dRetEI~eLksQ 97 (305)
T PF15290_consen 76 KLKESENRLHDRETEIDELKSQ 97 (305)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3333333333333333333333
No 201
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=51.62 E-value=2.1e+02 Score=26.77 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1109 AHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACR 1152 (1804)
Q Consensus 1109 ~~~~l~~l~~~l~~~~~~l~~Le~~~~~le~e~~~l~~~l~~l~ 1152 (1804)
+...-..+..+...+...-..|..++..++.+...+..++..+.
T Consensus 30 LKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 30 LKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444555556666666666665555544
No 202
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=50.75 E-value=1.8e+02 Score=26.68 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000239 1425 VAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVEDL 1482 (1804)
Q Consensus 1425 ~l~~~~~~l~~~L~e~e~a~~~~~~Er~~~~~~l~~Le~~i~~l~~~~~~l~~~l~~~ 1482 (1804)
.|...+..+..++...+.....+..|++.+-..+..+-..+..|..++..+..++...
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555556667777887777777777777777777777777665544
No 203
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=49.83 E-value=6.8e+02 Score=32.18 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 000239 1001 KSLEDSLAQVE 1011 (1804)
Q Consensus 1001 ~~Le~~l~~~e 1011 (1804)
..++..+..++
T Consensus 246 ~~l~~~i~~~~ 256 (457)
T TIGR01000 246 DQLQKSIASYQ 256 (457)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 204
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=49.54 E-value=3e+02 Score=29.67 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHhhhHHHHHHhhcc
Q 000239 1551 KLFSIINSATKLPHQIDLLEHGKQELQS---ILSTQTAEIEHLKGEVETHLRNKPDLEKMKIEFAEFTFGLEKIVNMLES 1627 (1804)
Q Consensus 1551 kL~~~~~~~~~l~~ei~~l~~ei~~l~~---~i~~~~~ei~~l~~el~~~~~~~~~n~~~r~~l~e~~~~le~~i~~l~~ 1627 (1804)
++..+..+++.++.++.....+|..|+. .++++...|..++........ +.......+. ...+|...+..++.
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~---~~e~~l~~~~-~~~ai~~al~~aka 96 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKE---EYEAKLAQMK-KDSAIKSALKGAKA 96 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 3334444555555555555555555555 444455555555554443322 2333334444 56677788888777
Q ss_pred Cc
Q 000239 1628 NE 1629 (1804)
Q Consensus 1628 ~~ 1629 (1804)
.+
T Consensus 97 kn 98 (155)
T PF06810_consen 97 KN 98 (155)
T ss_pred CC
Confidence 76
No 205
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.39 E-value=2.8e+02 Score=28.69 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=32.9
Q ss_pred HhhchhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000239 1410 RKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVE 1480 (1804)
Q Consensus 1410 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~e~e~a~~~~~~Er~~~~~~l~~Le~~i~~l~~~~~~l~~~l~ 1480 (1804)
..+......+...+..|..++..+-.+|++..........+-..++..+.....++..++.-+..|+.++.
T Consensus 50 kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555556666666666665544443444333333444444444444444444444444433
No 206
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=48.53 E-value=3.4e+02 Score=32.62 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1036 LEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQ 1082 (1804)
Q Consensus 1036 le~l~~el~~l~~~l~~~~~~i~~Le~~l~~le~~l~~l~~el~~~~ 1082 (1804)
+..++..+.++..++..+.-...+|..+...+.-+++.|+..+..++
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~e 125 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELE 125 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555554444444454444444444444444333333
No 207
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.34 E-value=5.1e+02 Score=30.30 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 000239 897 VAEDKITQLA 906 (1804)
Q Consensus 897 ~le~~i~~L~ 906 (1804)
..+..+..++
T Consensus 81 ~q~~el~~L~ 90 (251)
T PF11932_consen 81 SQEQELASLE 90 (251)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 208
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=47.32 E-value=2.4e+02 Score=34.44 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=14.2
Q ss_pred hhhhhhhhhhHhHHHHHHHh
Q 000239 1673 ESQKEVDDLTTKVDLLEESL 1692 (1804)
Q Consensus 1673 t~~~~~~DL~~y~kALD~a~ 1692 (1804)
+.-..+||.+...-++-+|+
T Consensus 387 ahgsslDdVD~kIleak~al 406 (575)
T KOG4403|consen 387 AHGSSLDDVDHKILEAKSAL 406 (575)
T ss_pred ccccchhhHHHHHHHHHHHH
Confidence 34456888888887777764
No 209
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=46.93 E-value=3.7e+02 Score=32.29 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 955 KNNMSVLICEKEEAQASGAAAVVEL 979 (1804)
Q Consensus 955 ~~ei~~l~~e~e~le~~~~~l~~el 979 (1804)
.-+++.|...+.+++..+..+..++
T Consensus 111 ~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 111 MYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 210
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=46.71 E-value=5.9e+02 Score=30.54 Aligned_cols=6 Identities=17% Similarity=0.318 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000239 853 INECHD 858 (1804)
Q Consensus 853 ~~ele~ 858 (1804)
+..|+.
T Consensus 29 ~~sL~q 34 (310)
T PF09755_consen 29 IESLQQ 34 (310)
T ss_pred HHHHHH
Confidence 333333
No 211
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.27 E-value=2.2e+02 Score=25.60 Aligned_cols=8 Identities=50% Similarity=0.617 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000239 1091 ELQMLKDE 1098 (1804)
Q Consensus 1091 el~~l~~e 1098 (1804)
+-..++.+
T Consensus 54 eneqlk~e 61 (79)
T COG3074 54 ENEQLKEE 61 (79)
T ss_pred HHHHHHHH
Confidence 33333333
No 212
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=45.81 E-value=4.6e+02 Score=29.08 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh------------hhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHH
Q 000239 1254 ITSCFRKTAEGFQMRTKILTDTF------------EHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGC 1321 (1804)
Q Consensus 1254 ~~~~lr~~l~e~~~~~k~L~~~~------------~~l~~~~d~~i~~l~~~lq~~e~~~~~~~~e~e~lk~~l~~le~e 1321 (1804)
++..|...+..|..+...|...+ ..........+..++..+..-..+...+..-..-|+.++......
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~ 96 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKA 96 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhccccccccCCCCccCCCCcchhhhhccccchHHH
Q 000239 1322 KQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNSVPELENLNRGFSQPESKVDGDDTTDHQKSLHGNRYHEA 1401 (1804)
Q Consensus 1322 ~~~le~~l~~le~el~~l~~~~~~~~~el~~el~~~ll~~~~~~ele~~~~~~~~~~~kl~~~~~~l~~~~l~~~e~~~~ 1401 (1804)
-..+..++..+..+...+...+...-..... +-+..+.-+..+++++- .|+
T Consensus 97 N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~-------------ee~~~~~y~~~eh~rll----~LW------------ 147 (182)
T PF15035_consen 97 NEALQEDLQKLTQDWERLRDELEQKEAEWRE-------------EEENFNQYLSSEHSRLL----SLW------------ 147 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhcccccHHH----HHH------------
Q ss_pred HHHHHHHHHhhchhhHHhhhhhhHHHHHHHHHHHHH
Q 000239 1402 AENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKL 1437 (1804)
Q Consensus 1402 ~e~L~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L 1437 (1804)
+.+..+++.|.+++......+..++..+
T Consensus 148 --------r~v~~lRr~f~elr~~TerdL~~~r~e~ 175 (182)
T PF15035_consen 148 --------REVVALRRQFAELRTATERDLSDMRAEF 175 (182)
T ss_pred --------HHHHHHHHHHHHHHHHHHhhHHHHHHHH
No 213
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=44.56 E-value=8.6e+02 Score=31.84 Aligned_cols=130 Identities=14% Similarity=0.047 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHhhhHHHHHHh
Q 000239 1545 SSAIVKKLFSIINSATKLPHQIDLLEHGKQELQSILSTQTAEIEHLKGEVETHLRNKPDLEKMKIEFAEFTFGLEKIVNM 1624 (1804)
Q Consensus 1545 ~~~~~~kL~~~~~~~~~l~~ei~~l~~ei~~l~~~i~~~~~ei~~l~~el~~~~~~~~~n~~~r~~l~e~~~~le~~i~~ 1624 (1804)
+......+....-.+.++..++..+-..++-=-..++.....+..+..-..+......+...|+..+...+..|....
T Consensus 264 l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~-- 341 (557)
T COG0497 264 LSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSE-- 341 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhh--
Confidence 334444444444444455555554444444333445555555665655555555555577777776665442222111
Q ss_pred hccCchhhhhhccccccchHHHHHHHHHHHHHhhhhHHHHHhhcchhhhhhhhhhhhhHhHHHHHHHhhccCCCchhhhh
Q 000239 1625 LESNEFVVNQKSSGSKGLLAVLEKQIMTLHSDAENSKSKVQELGNKLLESQKEVDDLTTKVDLLEESLHGRRDQPEIVQE 1704 (1804)
Q Consensus 1625 l~~~~a~~d~~~~~~~gel~~l~~qi~~l~~E~k~~~~~~~~~~iklqt~~~~~~DL~~y~kALD~a~~~~~~~~~~~~~ 1704 (1804)
..+.+|+.++..+..+| ... ...-+..=..|.+.|.+++...+.+|.|=..
T Consensus 342 ----------------~~~~~Le~~~~~l~~~~-------~~~------A~~Ls~~R~~~A~~L~~~v~~eL~~L~Me~a 392 (557)
T COG0497 342 ----------------ESLEALEKEVKKLKAEL-------LEA------AEALSAIRKKAAKELEKEVTAELKALAMEKA 392 (557)
T ss_pred ----------------hHHHHHHHHHHHHHHHH-------HHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 11334555555554443 221 1222223346788999999999999888544
Q ss_pred h
Q 000239 1705 R 1705 (1804)
Q Consensus 1705 ~ 1705 (1804)
+
T Consensus 393 ~ 393 (557)
T COG0497 393 R 393 (557)
T ss_pred e
Confidence 3
No 214
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.07 E-value=2.4e+02 Score=25.39 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1109 AHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACR 1152 (1804)
Q Consensus 1109 ~~~~l~~l~~~l~~~~~~l~~Le~~~~~le~e~~~l~~~l~~l~ 1152 (1804)
+...-..+..+...++.....|+.+...++.+-..+..++.++.
T Consensus 30 LKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 30 LKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555666666666666665655555543
No 215
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=43.67 E-value=6.2e+02 Score=30.00 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=17.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1080 VLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMED 1118 (1804)
Q Consensus 1080 ~~~~~~~~le~el~~l~~el~~~~~~l~~~~~~l~~l~~ 1118 (1804)
.+..++..+...+.++..+--.++.+....+..+-.+..
T Consensus 247 ~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ 285 (391)
T KOG1850|consen 247 KFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAE 285 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 333444444444444544444444444444444433333
No 216
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=43.62 E-value=7.6e+02 Score=30.97 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 706 FGALKEEKESQQKDLERSEEKSALLR 731 (1804)
Q Consensus 706 ~~~l~~e~~~l~~el~~~e~k~~~l~ 731 (1804)
.+.+...+..|+-++..+.+.+...+
T Consensus 89 ~Es~~~kl~RL~~Ev~EL~eEl~~~~ 114 (388)
T PF04912_consen 89 KESPEQKLQRLRREVEELKEELEKRK 114 (388)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555554443
No 217
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=42.78 E-value=5.2e+02 Score=28.86 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000239 712 EKESQQKDLERSEEKSALLRE 732 (1804)
Q Consensus 712 e~~~l~~el~~~e~k~~~l~e 732 (1804)
+...+...+..++.++..++.
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQR 145 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 218
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=41.68 E-value=8.5e+02 Score=31.01 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 000239 887 TMKSLEDALSVAEDK 901 (1804)
Q Consensus 887 e~~~le~el~~le~~ 901 (1804)
++..++.++...+..
T Consensus 179 ql~~~~~~l~~ae~~ 193 (444)
T TIGR03017 179 QIAALREDLARAQSK 193 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 219
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.57 E-value=4.2e+02 Score=33.12 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhHHH-HhchhHHHHHHHHHHHHHHH
Q 000239 366 NAELSKMKTELEHEKMKCTGTKEKLSLAV-TKGKALVQQRDSLKQSLADK 414 (1804)
Q Consensus 366 ~~el~~~~~el~~l~~~l~~~~eki~~~~-~k~~~l~~~~~~lk~eiee~ 414 (1804)
+.-++-.+.++..+++.|....+++.... .+.++++...+.+...|..+
T Consensus 268 Nd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRiskl 317 (395)
T PF10267_consen 268 NDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKL 317 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33355677888888888888888887653 33556664444444444333
No 220
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=40.84 E-value=6e+02 Score=28.99 Aligned_cols=34 Identities=29% Similarity=0.234 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000239 1055 TTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTL 1088 (1804)
Q Consensus 1055 ~~i~~Le~~l~~le~~l~~l~~el~~~~~~~~~l 1088 (1804)
..+..|+..+.++....+.+.+-+.++++.-..|
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 4445555555555555544444444444333333
No 221
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.77 E-value=2.8e+02 Score=30.22 Aligned_cols=89 Identities=20% Similarity=0.175 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh--HHHHHHHHHHHHhhhHHHHHHhhccCchhhhhhccccccc
Q 000239 1565 QIDLLEHGKQELQSILSTQTAEIEHLKGEVETHLRNKP--DLEKMKIEFAEFTFGLEKIVNMLESNEFVVNQKSSGSKGL 1642 (1804)
Q Consensus 1565 ei~~l~~ei~~l~~~i~~~~~ei~~l~~el~~~~~~~~--~n~~~r~~l~e~~~~le~~i~~l~~~~a~~d~~~~~~~ge 1642 (1804)
++..+..++..++.++..+..+++.++.++..+.+.-. ++......+......++..+..|...... -...+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~------vs~ee 146 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKP------VSPEE 146 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCHHH
Confidence 44455555555556666666666666666665544433 55555566666666666666665543222 12456
Q ss_pred hHHHHHHHHHHHHHhhh
Q 000239 1643 LAVLEKQIMTLHSDAEN 1659 (1804)
Q Consensus 1643 l~~l~~qi~~l~~E~k~ 1659 (1804)
+..+.+....+..+|+.
T Consensus 147 ~~~~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 147 KEKLEKEYKKWRKEWKK 163 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777777766643
No 222
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.97 E-value=9.5e+02 Score=30.78 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 000239 792 CIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIILP 834 (1804)
Q Consensus 792 ~~~~Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~~~i~el~~~ 834 (1804)
..-.+.+.++.+...++.....|......|..+.+.+..-+..
T Consensus 244 e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg 286 (654)
T KOG4809|consen 244 EQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMG 286 (654)
T ss_pred HHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcc
Confidence 3445666667777777777778888888888887777766553
No 223
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=38.73 E-value=5.1e+02 Score=28.87 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 404 RDSLKQSLADKTIELEKCLAELQEK 428 (1804)
Q Consensus 404 ~~~lk~eiee~~~ele~~~~eie~~ 428 (1804)
...++..+......+.++.++|-.+
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~l 161 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFSL 161 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445555555555555555555444
No 224
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=38.64 E-value=9.7e+02 Score=30.76 Aligned_cols=13 Identities=8% Similarity=-0.056 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 000239 852 YINECHDTKTQLE 864 (1804)
Q Consensus 852 ~~~ele~~l~~le 864 (1804)
.+..++.++..+.
T Consensus 98 ~~~~~~~~~~~~~ 110 (457)
T TIGR01000 98 QKQLLEQQLDNLK 110 (457)
T ss_pred HHHHHHHHHHHHH
Confidence 3333433333333
No 225
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=37.64 E-value=9.2e+02 Score=30.23 Aligned_cols=52 Identities=10% Similarity=0.049 Sum_probs=42.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHH
Q 000239 1557 NSATKLPHQIDLLEHGKQELQSILSTQTAEIEHLKGEVETHLRNKPDLEKMK 1608 (1804)
Q Consensus 1557 ~~~~~l~~ei~~l~~ei~~l~~~i~~~~~ei~~l~~el~~~~~~~~~n~~~r 1608 (1804)
..+..+|.+...+...+..+...+..+...++.++.-+...+.....|....
T Consensus 322 ~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i 373 (388)
T PF04912_consen 322 KTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETI 373 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466888888999999999999999999999999999998877766555443
No 226
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=36.75 E-value=8.1e+02 Score=29.33 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1035 ELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKL 1106 (1804)
Q Consensus 1035 ele~l~~el~~l~~~l~~~~~~i~~Le~~l~~le~~l~~l~~el~~~~~~~~~le~el~~l~~el~~~~~~l 1106 (1804)
.-+.|..++.....-+....+....|+.-+..+..+-..++-+++.+...+.+.+.+-..+..++++.....
T Consensus 107 qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layq 178 (401)
T PF06785_consen 107 QNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQ 178 (401)
T ss_pred hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 334444445555554555555566666666666666666666666666666666666666666665544433
No 227
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=36.47 E-value=6.1e+02 Score=27.85 Aligned_cols=32 Identities=3% Similarity=0.036 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 853 INECHDTKTQLEQELGNVKQEASALASELAET 884 (1804)
Q Consensus 853 ~~ele~~l~~le~ei~~l~~~l~~l~~el~el 884 (1804)
..++..++...++....+..+++.+...+...
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~a 90 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESA 90 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554444443
No 228
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.09 E-value=3.3e+02 Score=29.68 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=25.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 522 SFSDLESRLAWLKESFYQAKDEANVLLDQLNRM 554 (1804)
Q Consensus 522 ~~~ele~~i~~L~~~~~~~~~e~~~l~~el~~~ 554 (1804)
.+..+..+|..|...+..++.+...++.++..+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667778888888888888888888887766
No 229
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=35.52 E-value=8e+02 Score=28.93 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1091 ELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKL 1148 (1804)
Q Consensus 1091 el~~l~~el~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~Le~~~~~le~e~~~l~~~l 1148 (1804)
++...+..+.++......+...+.....++...+.++..|++..=..-.++..++.+|
T Consensus 177 ~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL 234 (267)
T PF10234_consen 177 QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEEL 234 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3334444444444444444444444444455555555555444433333443333333
No 230
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.43 E-value=5.3e+02 Score=26.77 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 000239 1003 LEDSLAQVEA 1012 (1804)
Q Consensus 1003 Le~~l~~~e~ 1012 (1804)
+...+..+..
T Consensus 41 m~~A~~~v~k 50 (126)
T PF07889_consen 41 MSDAVASVSK 50 (126)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 231
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.25 E-value=4.9e+02 Score=29.05 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 401 VQQRDSLKQSLADKTIELEKCLAELQEK 428 (1804)
Q Consensus 401 ~~~~~~lk~eiee~~~ele~~~~eie~~ 428 (1804)
...+..+-.++.++..++..+..++..+
T Consensus 102 ~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 102 SEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666543
No 232
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.86 E-value=3.7e+02 Score=26.73 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1562 LPHQIDLLEHGKQELQSILSTQTAEIEHLKGEVE 1595 (1804)
Q Consensus 1562 l~~ei~~l~~ei~~l~~~i~~~~~ei~~l~~el~ 1595 (1804)
+...+..+...++.+..++..+..++..++..+.
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 233
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=34.09 E-value=5e+02 Score=26.12 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1566 IDLLEHGKQELQSILSTQTAEIEHLKGE 1593 (1804)
Q Consensus 1566 i~~l~~ei~~l~~~i~~~~~ei~~l~~e 1593 (1804)
+..+...++.+++++..+...+.+++..
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443333
No 234
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=33.61 E-value=8.6e+02 Score=28.69 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1065 SQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVL 1130 (1804)
Q Consensus 1065 ~~le~~l~~l~~el~~~~~~~~~le~el~~l~~el~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~L 1130 (1804)
......+...+..+..+...-..++.++.+.+.+++...+++..++.---..-++...++..+..+
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 333444444555555555555666666666666666666666665555555545555444444433
No 235
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.37 E-value=1.1e+03 Score=32.32 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 873 EASALASELAETQSTMKSLEDALSV 897 (1804)
Q Consensus 873 ~l~~l~~el~el~~e~~~le~el~~ 897 (1804)
.+..+..++..++.++...+..+..
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~ 292 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNV 292 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333333
No 236
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.59 E-value=8.8e+02 Score=28.52 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 000239 845 KVNWIASYINECH 857 (1804)
Q Consensus 845 k~~~l~~~~~ele 857 (1804)
++.|+...+.++-
T Consensus 167 kV~WLR~~L~Ei~ 179 (269)
T PF05278_consen 167 KVDWLRSKLEEIL 179 (269)
T ss_pred chHHHHHHHHHHH
Confidence 4566666665544
No 237
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=31.61 E-value=8.2e+02 Score=27.84 Aligned_cols=135 Identities=15% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHH
Q 000239 867 LGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSK-----FAEAC 941 (1804)
Q Consensus 867 i~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~~L~~e~~~le~~~~ele~~l~~~~~el~~~~~~-----l~el~ 941 (1804)
...+..-++.++.-..-+...+.+++..+..++..+.........++..+..+...+..+.......-.. ...+-
T Consensus 11 ~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al 90 (221)
T PF04012_consen 11 KANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREAL 90 (221)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 942 ASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIK 1001 (1804)
Q Consensus 942 ~~i~~le~~l~~l~~ei~~l~~e~e~le~~~~~l~~ele~l~~el~~l~~~l~e~~~~i~ 1001 (1804)
..+..+...+..+...+..+......+...+..+...+..++.....+..+.........
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~ 150 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKK 150 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 238
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.85 E-value=1.1e+03 Score=29.64 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000239 792 CIRKMEADLIAMKDERNQFE 811 (1804)
Q Consensus 792 ~~~~Le~ei~~l~~~~~e~e 811 (1804)
|.+.+..-+..+..++..++
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 239
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=29.82 E-value=1.5e+03 Score=30.50 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=13.2
Q ss_pred Ccccccccccc---ccCccccc-cccccccC
Q 000239 14 ESSVNREEGDV---VGMNSVES-KDDLFLDA 40 (1804)
Q Consensus 14 ~~~~~~~~~~~---~~~~~~~~-~~~~~~~~ 40 (1804)
-||.|+-.|-. .|.+-..+ +-|+.|-|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (762)
T PLN03229 24 RSSSNGVNGVPLKTLGRARFSTRRRDLAVVA 54 (762)
T ss_pred HhhcCCcCCccchhcccccccccccceEEEe
Confidence 35566555543 45544444 44555543
No 240
>PRK10869 recombination and repair protein; Provisional
Probab=29.46 E-value=1.4e+03 Score=30.04 Aligned_cols=11 Identities=18% Similarity=-0.052 Sum_probs=4.5
Q ss_pred hhHHHHHHHHH
Q 000239 604 KDHMVRVLLKE 614 (1804)
Q Consensus 604 ~~~l~~~l~el 614 (1804)
++-++++|.=+
T Consensus 35 KS~ildAi~~l 45 (553)
T PRK10869 35 KSIAIDALGLC 45 (553)
T ss_pred hHHHHHHHHHH
Confidence 34444444333
No 241
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=29.13 E-value=3.8e+02 Score=30.42 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 399 ALVQQRDSLKQSLADKTIELEKCLAELQEKSSAL 432 (1804)
Q Consensus 399 ~l~~~~~~lk~eiee~~~ele~~~~eie~~~~~l 432 (1804)
..+.+...++++.+++..+..++.++...+..++
T Consensus 176 ~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 176 KAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4444455555555566666666555555554444
No 242
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.58 E-value=1.2e+03 Score=28.73 Aligned_cols=18 Identities=0% Similarity=-0.034 Sum_probs=8.3
Q ss_pred hhhhhhhHhhhHHHhhhc
Q 000239 498 LKGISLDFYKLKDAVSLI 515 (1804)
Q Consensus 498 l~~~~~e~~~l~e~~~~~ 515 (1804)
.......+.|+...+...
T Consensus 209 Y~~v~~~V~P~~~~l~~a 226 (344)
T PF12777_consen 209 YYEVNKEVEPKRQKLEEA 226 (344)
T ss_dssp HHHHCCCCCHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 333344455555555533
No 243
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.55 E-value=1.3e+03 Score=29.34 Aligned_cols=6 Identities=17% Similarity=0.318 Sum_probs=2.1
Q ss_pred HHHHHH
Q 000239 1086 TTLENE 1091 (1804)
Q Consensus 1086 ~~le~e 1091 (1804)
.+|...
T Consensus 386 ~~Ls~R 391 (508)
T KOG3091|consen 386 VELSHR 391 (508)
T ss_pred HHHHHH
Confidence 333333
No 244
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=28.25 E-value=9.6e+02 Score=27.57 Aligned_cols=9 Identities=44% Similarity=0.394 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 000239 1085 KTTLENELQ 1093 (1804)
Q Consensus 1085 ~~~le~el~ 1093 (1804)
+..|+.++.
T Consensus 238 ia~Le~eLA 246 (330)
T KOG2991|consen 238 IAELEIELA 246 (330)
T ss_pred HHHHHHHHH
Confidence 344444333
No 245
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=27.63 E-value=1.4e+03 Score=29.34 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 000239 1140 EVSALNSKLNAC 1151 (1804)
Q Consensus 1140 e~~~l~~~l~~l 1151 (1804)
++..++..|..+
T Consensus 456 eV~~vRqELa~l 467 (531)
T PF15450_consen 456 EVGAVRQELATL 467 (531)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 246
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.10 E-value=9.1e+02 Score=26.95 Aligned_cols=60 Identities=25% Similarity=0.348 Sum_probs=36.4
Q ss_pred ccchHHHHHHHHHHHHHhhhhHHHHHhhcchhhhhhhhhhhhhHhHHHHHHHhhcc------------CCCchhhhhhhh
Q 000239 1640 KGLLAVLEKQIMTLHSDAENSKSKVQELGNKLLESQKEVDDLTTKVDLLEESLHGR------------RDQPEIVQERSI 1707 (1804)
Q Consensus 1640 ~gel~~l~~qi~~l~~E~k~~~~~~~~~~iklqt~~~~~~DL~~y~kALD~a~~~~------------~~~~~~~~~~~~ 1707 (1804)
-|.+..++.|...|.. ..|+.-+++-++.-++||-.+|..= ..|.++-++ |
T Consensus 81 dG~l~tie~Qr~alEn---------------A~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~e--I 143 (221)
T KOG1656|consen 81 DGTLSTIEFQREALEN---------------ANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEE--I 143 (221)
T ss_pred hhHHHHHHHHHHHHHc---------------ccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH--H
Confidence 3556666666554432 2355566666777777776665532 235566666 6
Q ss_pred cccCCCCCC
Q 000239 1708 FEASSLPTG 1716 (1804)
Q Consensus 1708 ~~~~~~~~~ 1716 (1804)
.++.|.|.|
T Consensus 144 seAiS~Pvg 152 (221)
T KOG1656|consen 144 SEAISAPVG 152 (221)
T ss_pred HHHHhCccc
Confidence 777788887
No 247
>PRK11519 tyrosine kinase; Provisional
Probab=26.68 E-value=1.8e+03 Score=30.25 Aligned_cols=11 Identities=45% Similarity=0.534 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 000239 876 ALASELAETQS 886 (1804)
Q Consensus 876 ~l~~el~el~~ 886 (1804)
.+..++..++.
T Consensus 271 fL~~ql~~l~~ 281 (719)
T PRK11519 271 FLAQQLPEVRS 281 (719)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 248
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.62 E-value=4.4e+02 Score=23.16 Aligned_cols=29 Identities=10% Similarity=0.312 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 846 VNWIASYINECHDTKTQLEQELGNVKQEA 874 (1804)
Q Consensus 846 ~~~l~~~~~ele~~l~~le~ei~~l~~~l 874 (1804)
++.+...+..|..++..+..++..++..+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433333
No 249
>PRK09343 prefoldin subunit beta; Provisional
Probab=26.21 E-value=7.3e+02 Score=25.50 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1114 KSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRD 1153 (1804)
Q Consensus 1114 ~~l~~~l~~~~~~l~~Le~~~~~le~e~~~l~~~l~~l~~ 1153 (1804)
.++...+..+...+..++.....++..+.++...+..+..
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555555443
No 250
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.12 E-value=7.3e+02 Score=25.47 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000239 799 DLIAMKDERNQFEHFLLE 816 (1804)
Q Consensus 799 ei~~l~~~~~e~e~~L~e 816 (1804)
.+..+-..+..++..|.+
T Consensus 21 ql~~~~~qk~~le~qL~E 38 (119)
T COG1382 21 QLQKVILQKQQLEAQLKE 38 (119)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333334444333
No 251
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.92 E-value=2.5e+02 Score=23.45 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 000239 1297 TRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQN 1334 (1804)
Q Consensus 1297 ~e~~~~~~~~e~e~lk~~l~~le~e~~~le~~l~~le~ 1334 (1804)
++..+..+...++.|+.+...+..+...+...+..+..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666665555555433
No 252
>PRK01203 prefoldin subunit alpha; Provisional
Probab=24.61 E-value=8.2e+02 Score=25.55 Aligned_cols=37 Identities=8% Similarity=0.111 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC
Q 000239 438 SKEEFIKTENLVASLQETLQQSNLMLEKSEEVLAQID 474 (1804)
Q Consensus 438 l~~el~~~k~~~~~l~~~~~~k~~~l~~~e~~l~~~~ 474 (1804)
....+.+++...+.|+..+..+...++.+.+.+..+.
T Consensus 85 ~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 85 RERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688888889999999999999988888877765544
No 253
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.57 E-value=8e+02 Score=31.23 Aligned_cols=10 Identities=20% Similarity=0.049 Sum_probs=4.8
Q ss_pred hhhhHhhHHH
Q 000239 665 QSLLYVSYQE 674 (1804)
Q Consensus 665 ~~~l~~l~~E 674 (1804)
.|||.|+=+.
T Consensus 58 ~DTlrTlva~ 67 (472)
T TIGR03752 58 ADTLRTLVAE 67 (472)
T ss_pred cchHHHHHHH
Confidence 4555444444
No 254
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.03 E-value=5.6e+02 Score=23.02 Aligned_cols=21 Identities=38% Similarity=0.341 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000239 976 VVELEQVREEFASQTSKLTEA 996 (1804)
Q Consensus 976 ~~ele~l~~el~~l~~~l~e~ 996 (1804)
..++.+++.....+..++.+.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqea 37 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEA 37 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333333333333
No 255
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.97 E-value=1.2e+03 Score=26.69 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 1114 KSMEDALLKAKNDISVLEGEKRISDQEVSALN 1145 (1804)
Q Consensus 1114 ~~l~~~l~~~~~~l~~Le~~~~~le~e~~~l~ 1145 (1804)
+.....++.++.+...+.++...+..++..+-
T Consensus 168 ~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 168 EKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 33333344444444444444444444443333
No 256
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.95 E-value=1.4e+02 Score=31.03 Aligned_cols=43 Identities=28% Similarity=0.368 Sum_probs=34.3
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhhhhHHHhHhHHhhhhhHhhHHHHHHHHHHHh
Q 000239 166 APLHELLSECSQFLRSALEERSKNESAIREINAVLYKKDREIEHLNAKVAEILV 219 (1804)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 219 (1804)
..++++++.+.-+. ..+++|..++..+|-||.+|..+|++..+
T Consensus 80 a~~~e~qsli~~yE-----------~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 80 AEIQEQQSLIKTYE-----------IVVKKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred cchHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666555444 66899999999999999999999999953
No 257
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.92 E-value=5.4e+02 Score=32.71 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 751 LKLQLDEKNSEIEKLKLNLQEQESTISECRD 781 (1804)
Q Consensus 751 l~~~ieel~~ele~l~~el~~~e~~~~el~~ 781 (1804)
++..|...+.++.+++..+++.+.++.++..
T Consensus 119 lk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 119 LKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3344444444555555555555544444443
No 258
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.31 E-value=8.6e+02 Score=24.97 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=20.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHhCC
Q 000239 576 KDYNQKELNDLLCKYEEIVEKANKISLEKDHMVRVLLKESGT 617 (1804)
Q Consensus 576 ~e~L~~el~~l~~e~~e~~~~~~~~~~~~~~l~~~l~el~~~ 617 (1804)
+...-..+..++..+..+..+...+..+.+....++.++..+
T Consensus 9 ~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L 50 (121)
T PRK09343 9 VQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKL 50 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444444444444444444444444445554555555554
No 259
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.22 E-value=7.1e+02 Score=31.73 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=10.1
Q ss_pred CchhhhhhhhccC-CCCceEEe
Q 000239 1738 VPSAAHTRTMRKG-STDHLTIN 1758 (1804)
Q Consensus 1738 ~~~~~~~~~~~~~-~~~~~~~~ 1758 (1804)
||+ +-+|..+-. |+-+|-.|
T Consensus 701 vPv-~viR~~~NsLNNRFlPwd 721 (907)
T KOG2264|consen 701 VPV-EVIRVAENSLNNRFLPWD 721 (907)
T ss_pred Cce-EEEEcccccccccccCch
Confidence 455 456776622 33445444
No 260
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.88 E-value=6.7e+02 Score=24.92 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 844 EKVNWIASYINECHDTKTQLEQELGNVKQEASALAS---ELAETQSTMKSLEDALSVAEDKITQLADEKRQV 912 (1804)
Q Consensus 844 ~k~~~l~~~~~ele~~l~~le~ei~~l~~~l~~l~~---el~el~~e~~~le~el~~le~~i~~L~~e~~~l 912 (1804)
+.+-.+......+..++..+..+.+.+...+..+.. ....+..+...+..++..++..+..+...+..+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 261
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=21.47 E-value=1.3e+03 Score=26.78 Aligned_cols=68 Identities=12% Similarity=0.029 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 000239 795 KMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIILPVNSVFKEPLEKVNWIASYINECHDTKTQLE 864 (1804)
Q Consensus 795 ~Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~~~i~el~~~~~~~~~e~~~k~~~l~~~~~ele~~l~~le 864 (1804)
.++.+........+.+..........+...+..+..-+. ...-....+.++.....+.+.+......+
T Consensus 74 ~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae 141 (239)
T PF05276_consen 74 EAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAE 141 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555544444221 00112233344444444444444444433
No 262
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=21.07 E-value=1.7e+03 Score=27.89 Aligned_cols=272 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Q 000239 670 VSYQELILCQQILEEDALVRLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGK------- 742 (1804)
Q Consensus 670 ~l~~E~~~l~~~le~~~~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~el~~~e~k~~~l~e~l~~~~~k~k------- 742 (1804)
+.....+.-..+-.+...+.+=...+...+..+..++..|...+..+...+..+..=+.-..+-+..-..+..
T Consensus 37 t~~~q~~~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ 116 (384)
T PF03148_consen 37 TKWDQYDSNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDE 116 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCc
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH--------------------------
Q 000239 743 ---GLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDCI-------------------------- 793 (1804)
Q Consensus 743 ---~l~~e~~~l~~~ieel~~ele~l~~el~~~e~~~~el~~~l~~l~~~~e~~-------------------------- 793 (1804)
.|.+++.-+..--.-+...++.....+..+......+...|..=...+.-.
T Consensus 117 ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~ 196 (384)
T PF03148_consen 117 VEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNS 196 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccC
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000239 794 -------RKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIILPVNSVFKEPLEKVNWIASYINECHDTKTQLEQE 866 (1804)
Q Consensus 794 -------~~Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~~~i~el~~~~~~~~~e~~~k~~~l~~~~~ele~~l~~le~e 866 (1804)
..-..-|.....++.........+..-+......+..-.. .--..+...+.+....+..++.+
T Consensus 197 ~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~----------~vn~al~~Ri~et~~ak~~Le~q 266 (384)
T PF03148_consen 197 STPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQAD----------AVNAALRKRIHETQEAKNELEWQ 266 (384)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 867 LGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQ-----------------LADEKRQVEVGKKNVEEELEKAIEE 929 (1804)
Q Consensus 867 i~~l~~~l~~l~~el~el~~e~~~le~el~~le~~i~~-----------------L~~e~~~le~~~~ele~~l~~~~~e 929 (1804)
+.....++..++..+..+...+..-..-+.-+...+.. |-.+...+...+..|...+..+...
T Consensus 267 l~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~ 346 (384)
T PF03148_consen 267 LKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEAS 346 (384)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 000239 930 AHIQTSKFAEACASRKSLEDEM 951 (1804)
Q Consensus 930 l~~~~~~l~el~~~i~~le~~l 951 (1804)
+..+......+...+......+
T Consensus 347 l~~L~~~~~~Le~di~~K~~sL 368 (384)
T PF03148_consen 347 LQKLERTRLRLEEDIAVKNNSL 368 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 263
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.82 E-value=4.5e+02 Score=23.05 Aligned_cols=45 Identities=16% Similarity=0.351 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 522 SFSDLESRLAWLKESFYQAKDEANVLLDQLNRMKEAARNEIDRLS 566 (1804)
Q Consensus 522 ~~~ele~~i~~L~~~~~~~~~e~~~l~~el~~~~~~~~~~~~~l~ 566 (1804)
++.++++++..+...+..++.+...++..+..+-..++.-+.-.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 264
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.62 E-value=6.5e+02 Score=22.91 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000239 1060 LEDALSQVEANVAVLTEQNNVLQVGKTT 1087 (1804)
Q Consensus 1060 Le~~l~~le~~l~~l~~el~~~~~~~~~ 1087 (1804)
|+.++..+-..+..+..+...+......
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~ 32 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKT 32 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 265
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=20.48 E-value=1.7e+03 Score=27.72 Aligned_cols=125 Identities=17% Similarity=0.148 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000239 281 STYMLIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAAARDELLNLKRREEESVENLSHLENENRKLVEQAEKDRE 360 (1804)
Q Consensus 281 ~~~~~~ek~~~~~~eie~l~~~l~~~~~~~~~~ee~a~~~~~l~~el~~lk~~~~~~~e~l~~l~~E~~~l~~el~~~~~ 360 (1804)
..--+..++-+...+|+.+...-.--. -.+.++..+..+ ++.++.+.++.|.+-.-=|-.-+.-+.
T Consensus 441 aqG~LVqkIlETkke~e~~g~~~~p~e-------~~a~~~~sa~~~------~~~~lr~~~Q~LtkSa~PLgkl~D~i~- 506 (583)
T KOG3809|consen 441 AQGALVQKILETKKEIEDGGGQDQPEE-------SDADKIMSAERE------KMKQLREKLQDLTKSAYPLGKLFDFIN- 506 (583)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCCh-------hhhhhHHHHHHH------HHHHHHHHHHHHHHhhccHHHHHhhhh-
Confidence 345567777777777776554432221 122333333322 344444455554443333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHH----HhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 361 MVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAV----TKGKALVQQRDSLKQSLADKTIELEKCLAEL 425 (1804)
Q Consensus 361 ~l~~l~~el~~~~~el~~l~~~l~~~~eki~~~~----~k~~~l~~~~~~lk~eiee~~~ele~~~~ei 425 (1804)
.+++.++.+|.-+........+.++.-. --...|+.+...|...|.+-+.+|...+..|
T Consensus 507 ------eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~I 569 (583)
T KOG3809|consen 507 ------EDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKARGRI 569 (583)
T ss_pred ------hhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333333211 1124455555555555555555555444444
No 266
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.34 E-value=1.1e+03 Score=25.26 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000239 796 MEADLIAMKDERNQFEHFLLESNNMLQKVL 825 (1804)
Q Consensus 796 Le~ei~~l~~~~~e~e~~L~e~e~~l~~l~ 825 (1804)
...-|..++.+++++...+..+...|..+.
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~ 121 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELA 121 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555444444444333
No 267
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.12 E-value=8.6e+02 Score=24.13 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000239 851 SYINECHDTKTQLEQELG 868 (1804)
Q Consensus 851 ~~~~ele~~l~~le~ei~ 868 (1804)
..+..+...+..++..+.
T Consensus 13 ~~~~~l~~~~~~l~~~~~ 30 (105)
T cd00632 13 QQLQAYIVQRQKVEAQLN 30 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
Done!