Query 000239
Match_columns 1804
No_of_seqs 710 out of 2295
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 16:40:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000239.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_18-22//hhsearch_pdb/000239hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 106.7 12.0 17 65-81 94-110 (1184)
2 1i84_S Smooth muscle myosin he 1.0 1 1 98.6 20.8 16 77-92 167-182 (1184)
3 1c1g_A Tropomyosin; contractIl 1.0 1 1 75.7 47.4 282 861-1150 2-283 (284)
4 3vkg_A Dynein heavy chain, cyt 1.0 1 1 41.4 30.9 20 649-668 1786-1805(3245)
5 3vkg_A Dynein heavy chain, cyt 1.0 1 1 38.9 32.7 54 851-904 2049-2102(3245)
6 3na7_A HP0958; flagellar bioge 1.0 1 1 34.7 26.7 168 731-932 4-171 (256)
7 3l51_B Structural maintenance 1.0 1 1 32.2 -1.5 89 605-694 17-127 (166)
8 2v71_A Nuclear distribution pr 1.0 1 1 31.2 23.1 173 982-1158 8-187 (189)
9 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 28.7 20.3 165 872-1042 914-1078(1080)
10 3o0z_A RHO-associated protein 1.0 1 1 28.0 22.3 163 959-1129 2-168 (168)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=106.66 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=7.0
Q ss_pred CCCHHHHHHHHHHCCCC
Q ss_conf 63014677443210134
Q 000239 65 YSEENIVVSLKENQNQN 81 (1804)
Q Consensus 65 ~~~~~~~~~~~~~~~~~ 81 (1804)
.+|..++-.|+.--..+
T Consensus 94 l~e~~vl~~L~~Ry~~~ 110 (1184)
T 1i84_S 94 LNEASVLHNLRERYFSG 110 (1184)
T ss_dssp CCTTHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCC
T ss_conf 53788999999996479
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=98.55 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=6.5
Q ss_pred HCCCCCCCCCCCCCCC
Q ss_conf 1013443113678887
Q 000239 77 NQNQNHLVETDVGSGS 92 (1804)
Q Consensus 77 ~~~~~~~~~~~~~~~~ 92 (1804)
..+|+-++.|-+|.|-
T Consensus 167 ~~~Q~i~isGeSGaGK 182 (1184)
T 1i84_S 167 REDQSILCTGESGAGK 182 (1184)
T ss_dssp TCCEEEECCCSTTSST
T ss_pred CCCCEEEEECCCCCCC
T ss_conf 8996799726888874
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=75.72 Aligned_cols=282 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999978999999999999999887579999
Q 000239 861 TQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEA 940 (1804)
Q Consensus 861 ~~le~ei~~l~~~l~~l~~el~el~~~~~~le~el~~le~~i~~L~~e~~~le~~~~ele~el~~~~~el~~~~~~l~e~ 940 (1804)
..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+......+...+..+...+......+..+
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDA 81 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37899999988768889999999999999999889888999999999999999999999999999999999999989877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999988999999999999999999999999999999999889999999999999999999999987686
Q 000239 941 CASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQ 1020 (1804)
Q Consensus 941 ~~~i~~lee~l~~l~~ei~~l~~e~e~le~~~~~le~ele~l~~el~~l~~~l~e~~~~i~~Le~~l~~~e~~l~~l~~e 1020 (1804)
...+..+...+..+...+..+...+..+......+...+..+...+..+...+......+..+...+..+...+..+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 161 (284)
T 1c1g_A 82 EADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRK 161 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999988988998898899999999999988888999999888777510667999999999999988889988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 39999997999999999999999999999999999999999999999999999999999989548999999999999997
Q 000239 1021 NKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAG 1100 (1804)
Q Consensus 1021 ~~~~~~~~~~~le~el~~l~~el~~l~~~l~~~~~~i~~Le~~l~~l~~~~~~l~~e~~~l~~~i~~le~el~~l~~El~ 1100 (1804)
...+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+.
T Consensus 162 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 233 (284)
T 1c1g_A 162 --------YEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK 233 (284)
T ss_dssp --------HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------999998899888889989998987887999999999999999999997587788899999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998999999999999999989999999989899999999999999
Q 000239 1101 SQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNA 1150 (1804)
Q Consensus 1101 ~~~~~l~~~~~~l~~l~~~l~~~~~~l~~le~e~~~le~e~~~l~~~l~~ 1150 (1804)
.+...+..+...+..+...+..+...+..+...+..+...+..+...|..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 234 EAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89988999998899999999999999999998899999999999997436
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=41.41 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=10.7
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q ss_conf 78899876727788865566
Q 000239 649 ASSDTSGADSEMLQTMQSLL 668 (1804)
Q Consensus 649 ~l~~~~~~~~e~~~~l~~~l 668 (1804)
|...........|+.|.++|
T Consensus 1786 Pvg~~fR~R~r~fPaLvncc 1805 (3245)
T 3vkg_A 1786 PASPDFHNRSATSPALFNRC 1805 (3245)
T ss_dssp TTSTTTTC----CTHHHHHS
T ss_pred CCCHHHHHHHHHCHHHHHCC
T ss_conf 99779999999791876271
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=38.93 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989998999999999999999999999999999999999999999999999999
Q 000239 851 SYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQ 904 (1804)
Q Consensus 851 ~~~~~l~~~l~~le~ei~~l~~~l~~l~~el~el~~~~~~le~el~~le~~i~~ 904 (1804)
..+.....+...++.++......+....+-+..+..+..+....+..+...+..
T Consensus 2049 ~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2049 EEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999986211313299999999999972
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=34.71 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999802552999999999999999999999997999898899999999776724888999999999999999999
Q 000239 731 REKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIAMKDERNQF 810 (1804)
Q Consensus 731 ~e~l~~~~~k~k~l~~~~~~l~~~ieel~~ele~lk~el~~~e~~~~~l~~el~~l~~~~e~~~~Le~ei~~lk~~~~e~ 810 (1804)
.+.+.... .+..+...|..+...+..+..++..++..+..+...+..+ ..++..+......+
T Consensus 4 ~~~L~~L~--------~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~----------~~~l~d~~~~~~~~ 65 (256)
T 3na7_A 4 NTHLKQLI--------EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNL----------EEEKLALKLQVSKN 65 (256)
T ss_dssp HHHHHHHH--------HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_conf 89999999--------9999999999999999875899999999999999999999----------99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998999999997542116655445431657999999899989999999999999999999999999999999999
Q 000239 811 EHFLLESNNMLQKVLETVDRIILPVNSVFKEPLEKVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMKS 890 (1804)
Q Consensus 811 e~~l~e~e~~l~~l~~~i~el~~~~~~~l~~~~~k~~~l~~~~~~l~~~l~~le~ei~~l~~~l~~l~~el~el~~~~~~ 890 (1804)
+..+......+.+....+..+..+ ..+..+..++..+...+..+...+..+...++.+...+..
T Consensus 66 e~~i~~~~~ri~~~~~~l~~v~~~----------------kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~ 129 (256)
T 3na7_A 66 EQTLQDTNAKIASIQKKMSEIKSE----------------RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQED 129 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSS----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 978999999999999998725899----------------9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999789999999999999998
Q 000239 891 LEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHI 932 (1804)
Q Consensus 891 le~el~~le~~i~~L~~e~~~le~~~~ele~el~~~~~el~~ 932 (1804)
+...+..+...+..........-.....-...+...+..+..
T Consensus 130 ~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~ 171 (256)
T 3na7_A 130 LKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVE 171 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999885
No 7
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=1.00 E-value=1 Score=32.24 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHH--------HCCCCCHHHHHHHHHHHHHHH----CC--CCCCCC--------CCCHHHHH
Q ss_conf 689999998818987530000--------014788056899999998840----26--788998--------76727788
Q 000239 605 DHMVRVLLKESGTSMEDQDVA--------SQTSSDPTAIISKCIGKIREQ----TC--ASSDTS--------GADSEMLQ 662 (1804)
Q Consensus 605 ~~l~~~i~el~~~~i~~y~~A--------~~~~ve~~~~~~~~~~~Lk~~----~~--~l~~~~--------~~~~e~~~ 662 (1804)
..+.|.|++++.++ ++|.+| +.++|+++.+|..|+++||++ ++ ||+.-. ...+....
T Consensus 17 ~Gv~G~v~dLi~v~-~~y~~Aie~alg~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~~~~~~~~~~~~~~~~~ 95 (166)
T 3l51_B 17 PGIYGRLGDLGAID-EKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVWAKKMSKIQTPENTP 95 (166)
T ss_dssp TTEEEEGGGSCBCC-GGGHHHHHHHCGGGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTGGGTTSCCCCCCGGGCC
T ss_pred CCCEEEHHHHEEEC-HHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 97168877803007-87999999997128429988799999999999872997079998865554556633022665465
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86556672277799999999997999999999
Q 000239 663 TMQSLLYVSYQELILCQQILEEDALVRLQLND 694 (1804)
Q Consensus 663 ~l~~~l~~l~~e~~~l~~~le~~~~~~~~~~~ 694 (1804)
.+.+.+..-+.++..++..++..+.+..+++.
T Consensus 96 ~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~ 127 (166)
T 3l51_B 96 RLFDLVKVKNEEIRQAFYFALRDTLVANNLDQ 127 (166)
T ss_dssp BHHHHCBCSCHHHHHHHHHHHTTCEEESSHHH
T ss_pred HHHHEEECCCHHHHHHHHHHCCCEEEECCHHH
T ss_conf 68520407868899999998299899899999
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=31.22 Aligned_cols=173 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 9999999998899999999999999999999999876863---99999979999999999999999999999999999--
Q 000239 982 VREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQN---KEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTT-- 1056 (1804)
Q Consensus 982 l~~el~~l~~~l~e~~~~i~~Le~~l~~~e~~l~~l~~e~---~~~~~~~~~~le~el~~l~~el~~l~~~l~~~~~~-- 1056 (1804)
...++.-|+..+..+......++..+..+...-..|+.++ ...+......+...+..+..++..+..++......
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~ 87 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY 87 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999998999999999999999988999999999899999999999999988899
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --999999999999999999999999895489999999999999979999999899999999999999998999999998
Q 000239 1057 --IKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEK 1134 (1804)
Q Consensus 1057 --i~~Le~~l~~l~~~~~~l~~e~~~l~~~i~~le~el~~l~~El~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~le~e~ 1134 (1804)
+..|+..+..+......+...+..++..-..++........-+.....++..+-....-+..++.. ...+....
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E----Ke~l~~~~ 163 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE----KESLLVSV 163 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_conf 99999999999999999999999999999712888999899965999998988999999989878988----99899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999999999999631
Q 000239 1135 RISDQEVSALNSKLNACRDELAGT 1158 (1804)
Q Consensus 1135 ~~le~e~~~l~~~l~~l~~el~~~ 1158 (1804)
..+..++.++...+......-..+
T Consensus 164 QRLkdE~rDLk~El~v~~~~~~~~ 187 (189)
T 2v71_A 164 QRLKDEARDLRQELAVRERQQEVT 187 (189)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 998988898899998785054423
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=28.71 Aligned_cols=165 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999997899999999999999988757999999999999999
Q 000239 872 QEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEACASRKSLEDEM 951 (1804)
Q Consensus 872 ~~l~~l~~el~el~~~~~~le~el~~le~~i~~L~~e~~~le~~~~ele~el~~~~~el~~~~~~l~e~~~~i~~lee~l 951 (1804)
+.+..+......+...+.+++..+...+.....+......+......--..|+.-..++.............+..+++.+
T Consensus 914 r~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~ 993 (1080)
T 2dfs_A 914 RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993 (1080)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87677899988899999999999999999999999999875678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998899999999999999999999999999999999988999999999999999999999998768639999997999
Q 000239 952 SVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAA 1031 (1804)
Q Consensus 952 ~~l~~ei~~l~~e~e~le~~~~~le~ele~l~~el~~l~~~l~e~~~~i~~Le~~l~~~e~~l~~l~~e~~~~~~~~~~~ 1031 (1804)
..+..++..+..++..++.....+..+++ ..+..+.+....++.++..++..+......+. .............
T Consensus 994 ~~l~~~~~~~~ke~~~lee~~~~~~~~L~---~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~ 1067 (1080)
T 2dfs_A 994 AKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTEKEELNRRIHDQAKEIT---ETMEKKLVEETKQ 1067 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999---99999999999999999999999999888777---7888878999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q 000239 1032 AVLELEQVREE 1042 (1804)
Q Consensus 1032 le~el~~l~~e 1042 (1804)
++.+++.-+..
T Consensus 1068 ~~~~~~~~~~~ 1078 (1080)
T 2dfs_A 1068 LELDLNDERLR 1078 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999984
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=1.00 E-value=1 Score=27.96 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999889999999999999999999999987686399999979999999999
Q 000239 959 SVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQ 1038 (1804)
Q Consensus 959 ~~l~~e~e~le~~~~~le~ele~l~~el~~l~~~l~e~~~~i~~Le~~l~~~e~~l~~l~~e~~~~~~~~~~~le~el~~ 1038 (1804)
......+..++..+..+...+..-......+++...++...+..++.....+...+..+... ...++.++..
T Consensus 2 ~~~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~--------k~~Leke~~~ 73 (168)
T 3o0z_A 2 SLANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENS--------KSQTDKDYYQ 73 (168)
T ss_dssp --------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_conf 63248889999999999999998678999999889999988998999978999999999988--------9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999989548999999999999997999----99998999999
Q 000239 1039 VREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQA----VKLADAHTTIK 1114 (1804)
Q Consensus 1039 l~~el~~l~~~l~~~~~~i~~Le~~l~~l~~~~~~l~~e~~~l~~~i~~le~el~~l~~El~~~~----~~l~~~~~~l~ 1114 (1804)
++..+..-..........+..++..+..+..++..+.........+...+...+..+..+...+. .++..++..+.
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988877778999999999999999999999899999999999999899998997404788777999898999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999989999
Q 000239 1115 SMEDALLKAKNDISV 1129 (1804)
Q Consensus 1115 ~l~~~l~~~~~~l~~ 1129 (1804)
.-..++.....++..
T Consensus 154 qE~~~H~~TkarL~~ 168 (168)
T 3o0z_A 154 QEVNEHKVTKARLTD 168 (168)
T ss_dssp HHHHHHCC-------
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999988989977249
Done!