Query 000239
Match_columns 1804
No_of_seqs 710 out of 2295
Neff 8.3
Searched_HMMs 13730
Date Tue Mar 26 16:51:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000239.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_18-22//hhsearch_scop/000239hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gxja_ d.215.1.1 (A:) Smc hin 31.6 6.1 0.00044 11.2 1.6 88 604-693 16-127 (161)
2 d1w1wa_ c.37.1.12 (A:) Smc hea 7.5 42 0.0031 4.7 1.1 19 83-101 29-47 (427)
3 d1gqea_ e.38.1.1 (A:) Polypept 2.9 1.4E+02 0.01 0.6 11.1 15 1314-1328 277-291 (362)
4 d1stma_ b.121.7.1 (A:) SPMV co 2.1 2E+02 0.015 -0.7 0.3 33 1762-1797 56-88 (141)
5 d1t23a_ d.247.1.1 (A:) Chromos 2.0 2.1E+02 0.016 -0.8 0.3 50 1728-1785 14-63 (93)
6 d2vnud2 b.40.4.5 (D:911-998) E 2.0 2.2E+02 0.016 -0.9 0.2 14 1751-1764 65-78 (88)
7 d1gpra_ b.84.3.1 (A:) Glucose 1.7 2.7E+02 0.02 -1.6 1.6 80 1707-1796 30-109 (158)
8 d2o9ux1 d.17.1.1 (X:1001-1096) 1.6 2.7E+02 0.02 -1.6 0.5 28 1763-1790 67-94 (96)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 1.5 3E+02 0.022 -1.9 14.4 85 1036-1120 3-132 (133)
10 d2gpra_ b.84.3.1 (A:) Glucose 1.5 3.1E+02 0.022 -2.0 2.4 59 1728-1796 49-107 (154)
No 1
>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}
Probab=31.61 E-value=6.1 Score=11.19 Aligned_cols=88 Identities=10% Similarity=0.023 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHCCCCCCCHHH---------HCCCCCHHHHHHHHHHHHHHH--C--C--CCCCCC--CCCHH-------
Q ss_conf 5689999998818987530000---------014788056899999998840--2--6--788998--76727-------
Q 000239 604 KDHMVRVLLKESGTSMEDQDVA---------SQTSSDPTAIISKCIGKIREQ--T--C--ASSDTS--GADSE------- 659 (1804)
Q Consensus 604 ~~~l~~~i~el~~~~i~~y~~A---------~~~~ve~~~~~~~~~~~Lk~~--~--~--~l~~~~--~~~~e------- 659 (1804)
...+.|.|+++..++ ++|..| ..++|++..+|..|+++||.+ + + |++.-. ...+.
T Consensus 16 ~~gv~G~v~dli~v~-~~y~~Ave~aLG~~l~~vVV~~~~~A~~~i~~lk~~~~Gr~tfipl~~i~~~~~~~~~~~~~~~ 94 (161)
T d1gxja_ 16 FPGLVDVVSNLIEVD-EKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSFNRISGLENERG 94 (161)
T ss_dssp CTTEEEEHHHHCBCC-GGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCCCCCCTTGGGSTT
T ss_pred CCCCEEEHHHHCCCC-HHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 799558788827608-8799999999636540599787999999999974325861899965543465321110003777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7888655667227779999999999799999999
Q 000239 660 MLQTMQSLLYVSYQELILCQQILEEDALVRLQLN 693 (1804)
Q Consensus 660 ~~~~l~~~l~~l~~e~~~l~~~le~~~~~~~~~~ 693 (1804)
...++.+++.+ +.++..+...++..+.+..+++
T Consensus 95 ~v~~~~dlV~~-~~~~~~~~~~llg~~~iv~~l~ 127 (161)
T d1gxja_ 95 FVGYAVDLVKF-PSDLEVLGGFLFGNSVVVETLD 127 (161)
T ss_dssp EEEEHHHHCBC-CGGGHHHHHHHHTTCEEESCHH
T ss_pred CCHHHHHHCCC-CHHHHHHHHHHCCCEEEECCHH
T ss_conf 33328874338-8889999999859989999999
No 2
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.45 E-value=42 Score=4.67 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCHHHHHHHH
Q ss_conf 3113678887124789876
Q 000239 83 LVETDVGSGSNHELERLRN 101 (1804)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~ 101 (1804)
...|.+|+|-+-++.+.+=
T Consensus 29 ~i~G~NGsGKS~ileAi~~ 47 (427)
T d1w1wa_ 29 SIIGPNGSGKSNMMDAISF 47 (427)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999999988999999999
No 3
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=2.85 E-value=1.4e+02 Score=0.62 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 899699979999999
Q 000239 1314 KVKNLEGCKQEHEEA 1328 (1804)
Q Consensus 1314 ~l~~l~~~~~~~e~~ 1328 (1804)
+..+...+...+...
T Consensus 277 q~~Nk~~A~~~L~~~ 291 (362)
T d1gqea_ 277 QHKNKDQAMKQMKAK 291 (362)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 147899999999999
No 4
>d1stma_ b.121.7.1 (A:) SPMV coat protein {Satellite panicum mosaic virus [TaxId: 154834]}
Probab=2.08 E-value=2e+02 Score=-0.65 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 311126876775332443332434786558886411
Q 000239 1762 ESARLINSEETDEDKGHVFKSLNTLGLIPRQGKMVA 1797 (1804)
Q Consensus 1762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1797 (1804)
-..+|.+-. |||-+|. -.|-+||-+|+--|+-+
T Consensus 56 y~arly~p~--d~d~v~~-tg~q~~gt~prt~r~~~ 88 (141)
T d1stma_ 56 YNARLYNPG--DTDSVHA-TGVQLMGTVPRTVRLTP 88 (141)
T ss_dssp EEEEECCTT--CSSCSEE-CCCEEECSSCEEEEECC
T ss_pred HHEECCCCC--CCCCCCC-EEEEEECCCCCEEEEEE
T ss_conf 120414899--8664464-10377446675067000
No 5
>d1t23a_ d.247.1.1 (A:) Chromosomal protein MC1 {Archaeon Methanosarcina thermophila [TaxId: 2210]}
Probab=2.00 E-value=2.1e+02 Score=-0.82 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7678744568862344431015788724773155311126876775332443332434
Q 000239 1728 GTLGQKTISPVPSAAHTRTMRKGSTDHLTINIDSESARLINSEETDEDKGHVFKSLNT 1785 (1804)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1785 (1804)
+..|.+ ..+.|--|-....++|++|-- .++ .|..-+.--+|+|+|+--..
T Consensus 14 ~~~~vF-sg~~PrqAALKAA~rg~~~~~------~~~-~IrLRE~Gt~kvH~f~gw~~ 63 (93)
T d1t23a_ 14 NEHGVF-TGKQPRQAALKAANRGSGTKA------NPD-IIRLRERGTKKVHVFKAWKE 63 (93)
T ss_dssp SCCEEE-EESSTTHHHHHHHHHTTCCSS------SCC-EEEEEETTTTEEEEEEECSE
T ss_pred CEEEEE-ECCCHHHHHHHHCCCCCCCCC------CCC-EEEEEECCCCCEEEEEEEEE
T ss_conf 726578-389866999987226887645------773-47974158774689887899
No 6
>d2vnud2 b.40.4.5 (D:911-998) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=1.97 E-value=2.2e+02 Score=-0.87 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=6.8
Q ss_pred CCCCEEEECCCCCC
Q ss_conf 88724773155311
Q 000239 1751 STDHLTINIDSESA 1764 (1804)
Q Consensus 1751 ~~~~~~~~~~~~~~ 1764 (1804)
-=|+|..+|.+..+
T Consensus 65 vFD~V~V~is~vkd 78 (88)
T d2vnud2 65 VFDKVEVQVRSVMD 78 (88)
T ss_dssp TTCEEEEEEC----
T ss_pred ECCEEEEEEEEEEC
T ss_conf 66548999999878
No 7
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}
Probab=1.65 E-value=2.7e+02 Score=-1.58 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10268999876540132222476787445688623444310157887247731553111268767753324433324347
Q 000239 1707 IFEASSLPTGSEISEVEDVMQGTLGQKTISPVPSAAHTRTMRKGSTDHLTINIDSESARLINSEETDEDKGHVFKSLNTL 1786 (1804)
Q Consensus 1707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1786 (1804)
+|-+.-++-|--|.--.+....|+.-. |+.+..+.|.=+++--+.-.+-|.||.+.-.| +|.||+.+--.
T Consensus 30 vFs~~~~G~G~aI~P~~~~v~AP~~G~-I~~i~~T~HAigi~t~~G~evLiHiGiDTV~L---------~G~gF~~~v~~ 99 (158)
T d1gpra_ 30 VFSGKMMGDGFAILPSEGIVVSPVRGK-ILNVFPTKHAIGLQSDGGREILIHFGIDTVSL---------KGEGFTSFVSE 99 (158)
T ss_dssp HHHTTSSCEEEEEEESSCEEECSSSEE-EEEECTTSSEEEEEETTSCEEEEECSBSCGGG---------TTTTEEECCCT
T ss_pred HHCCCCCCCEEEEEECCCEEEEEECEE-EEEECCCCCEEEEEECCCEEEEEEEEECCCCC---------CCCCEEEEECC
T ss_conf 755578336499997399899820859-99983799799999489729999980052014---------89606999868
Q ss_pred CCCCCCCCCC
Q ss_conf 8655888641
Q 000239 1787 GLIPRQGKMV 1796 (1804)
Q Consensus 1787 ~~~~~~~~~~ 1796 (1804)
|=.-+.|-|+
T Consensus 100 Gd~Vk~G~~L 109 (158)
T d1gpra_ 100 GDRVEPGQKL 109 (158)
T ss_dssp TCEECTTCEE
T ss_pred CCEECCCCEE
T ss_conf 9999689897
No 8
>d2o9ux1 d.17.1.1 (X:1001-1096) Monellin, B & A chains together {Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]}
Probab=1.65 E-value=2.7e+02 Score=-1.59 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1112687677533244333243478655
Q 000239 1763 SARLINSEETDEDKGHVFKSLNTLGLIP 1790 (1804)
Q Consensus 1763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1790 (1804)
|++++++.-+.|-|.+|-|-|...|-||
T Consensus 67 sdklfradisedyktrgrkllrfngpvp 94 (96)
T d2o9ux1 67 SDKLFRADISEDYKTRGRKLLRFNGPVP 94 (96)
T ss_dssp TTEEC-CEEEEETTTCCEEEEECCCCCC
T ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 3314340101665531212676169999
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=1.51 E-value=3e+02 Score=-1.94 Aligned_cols=85 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Q ss_conf 999999999999999999999999999999999999999-----------------------------------------
Q 000239 1036 LEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVL----------------------------------------- 1074 (1804)
Q Consensus 1036 l~~l~~el~~l~~~l~~~~~~i~~Le~~l~~l~~~~~~l----------------------------------------- 1074 (1804)
+..+...+..+...+..+...+..+...+..+..-...+
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~v 82 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI 82 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCCEEEEECCCEEE
T ss_conf 89999999999999999999999999999999999999997622789707997478538887863898648883598235
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----9999998954899999999999999799999998999999999999
Q 000239 1075 ----TEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDAL 1120 (1804)
Q Consensus 1075 ----~~e~~~l~~~i~~le~el~~l~~El~~~~~~l~~~~~~l~~l~~~l 1120 (1804)
.+...-+...+..++..+..+...+..+...+..+...+..+..++
T Consensus 83 E~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a~ 132 (133)
T d1fxkc_ 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 50599999999999999999999999999999999999999999998730
No 10
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}
Probab=1.47 E-value=3.1e+02 Score=-2.05 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 767874456886234443101578872477315531112687677533244333243478655888641
Q 000239 1728 GTLGQKTISPVPSAAHTRTMRKGSTDHLTINIDSESARLINSEETDEDKGHVFKSLNTLGLIPRQGKMV 1796 (1804)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1796 (1804)
.|++-. |+.+..+.|.=+++-.+.-.+-|.|+.+.-.| +|.||+.+--.|=.-+.|-|+
T Consensus 49 AP~dG~-I~~i~~T~HAigi~t~~G~eiLIHiGidTV~L---------~G~gF~~~v~~Gd~V~~G~~L 107 (154)
T d2gpra_ 49 APVSGK-LVTAFPTKHAFGIQTKSGVEILLHIGLDTVSL---------DGNGFESFVTQDQEVNAGDKL 107 (154)
T ss_dssp CSSCEE-EEECCTTCSEEEEECTTSCEEEEECSSSGGGG---------TTCSEEECCCTTCEECTTCEE
T ss_pred EECCEE-EEEECCCCCEEEEEECCCCEEEEEECCCCCCC---------CCCEEEEEECCCCEECCCCEE
T ss_conf 853809-99987789699999189989999976361015---------883268995489999089999
Done!