BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000240
(1803 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5VU65|P210L_HUMAN Nuclear pore membrane glycoprotein 210-like OS=Homo sapiens
GN=NUP210L PE=2 SV=1
Length = 1888
Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 349/1540 (22%), Positives = 630/1540 (40%), Gaps = 252/1540 (16%)
Query: 40 ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSIL-LTVAEAMSIEPPSPVFVL 98
E+E D+ +V GI G +V V + E + +A +++ L V E + + P +++L
Sbjct: 206 EMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKKVAAALIRLLVLENIFLIPSHDIYLL 265
Query: 99 VGAALQYKL-KVIRGNIPQVVALPSPH-------HRWSVSNS---SVAQVDNMMGLTQAL 147
VG ++Y++ K+++G + +V P H HR +++ S VA +D+ + A
Sbjct: 266 VGTYIKYQVAKMVQGRVTEV-KFPLEHYILELQDHRVALNGSHSEKVAILDDKTAMVTAS 324
Query: 148 RLGQTAVI-----VEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVA 202
+LGQT ++ V V+G ++ VV P L + P G+
Sbjct: 325 QLGQTNLVFVHKNVHMRSVSGLPN-CTIYVVEPGFLGFTVQP----GN------------ 367
Query: 203 RWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPND-----LVL 257
RW + G Y+I + VF + S ++YI SD++++ T+ P + L
Sbjct: 368 RWSLEVGQVYVITVDVFDKS--STKVYI--SDNLRI---------TYDFPKEYFEEQLTT 414
Query: 258 KHGWRNSRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQT 313
+G + I+KA G+ + ASLT + K ++K QE+ +I F + T
Sbjct: 415 VNG--SYHIVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEV----KIYFPIMLT 468
Query: 314 NGVSESILLPWAP-GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKK-PG 371
+ + P P G+ ++ GG S ++ W SS+ V +T GVV A + G
Sbjct: 469 ---PKFLAFPHHPMGMLYRYKVQVEGG----SGNFTWTSSNETVVIVTTKGVVTAGQVRG 521
Query: 372 KATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLN-----G 426
+TV + + F Y EI I V + M +L F + +G ++ + M +N
Sbjct: 522 NSTVLARDVQNPFRYGEIKIHVLKLNKMELL-PFHADVEIGQIIEIPIAMYHINKETKEA 580
Query: 427 AYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGT---VEHDISLHGPP-CSWAHL 482
F C S +N +DK G ++ I GP CS H+
Sbjct: 581 MAFTDCSHLSLDLN-------------------MDKQGVFTLLKEGIQRPGPMHCSSTHI 621
Query: 483 YASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFN 542
A S G T++ ++++ ++ L++S+ AAY PL
Sbjct: 622 AAKSLGHTLVTVSVNECDKY----------LESSATFAAYEPL----------------- 654
Query: 543 LGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPW--EEDVDFIETFEIFNGKHNHASDG 600
+ ++ + ++ +++ GGP PW E F+E N +
Sbjct: 655 -------KALNPVEVALVTWQSVKEMVFEGGPRPWILEPSRFFLE----LNAEKTEKIGI 703
Query: 601 VHIHVVSGSSKN--LYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASI 658
+ + S +N +Y + C LG L F+ GN G +P PAV + + C+ PAS+
Sbjct: 704 AQVWLPSKRKQNQYIYRIQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASM 763
Query: 659 ALLVDEPGTAILNERKVIQTAAQADRSPGRIR-VTPVTVANGQTIRIAAVGISSSGEAFA 717
++ T + + AQ P + + PV+ + +A F
Sbjct: 764 SV------TPVYK----VPAGAQPCPLPQHNKWLIPVSRLRDTVLELAV--FDQHRRKFD 811
Query: 718 NSSSLCLGWELSNCDGLAYWDDAY---------GSQKSASSWERFLVLQNESGLCVVRAT 768
N SSL L W+ SN + LA+++D GS ++ + L + G ++
Sbjct: 812 NFSSLMLEWKSSN-ETLAHFEDYKSVEMVAKDDGSGQTRLHGHQILKVHQIKGTVLIGVN 870
Query: 769 ASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGG 828
G+ + K EIS + V L LV + V PE ++ +PD K S+ G
Sbjct: 871 FVGYSEKKSPK------EISNLPRSVDVELLLVDDVTVVPENATIYNHPDVKETFSLVEG 924
Query: 829 SCFLEAAVNDS-QVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQV 887
S + VN S Q V I E ++L+ P G + VYD+ LA A+A ++V
Sbjct: 925 SGYF--LVNSSEQGVVTITYMEAESSVELV--PLHPGFFTLEVYDLCLAFLGPATAHLRV 980
Query: 888 ADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTY---MDIRVHIEDHIVEL 944
+D+ +++ +++ + + ++ ++ GS+ FQ Y M++++ + IV L
Sbjct: 981 SDIQELELDLIDKVEIDKTVLVTVRVL-----GSSKRPFQNKYFRNMELKLQLASAIVTL 1035
Query: 945 IDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHP 1004
+ Y + A +G TTL A+ + G + S P +EV+ P R+ P
Sbjct: 1036 TPMEQQDEYSENYI------LRATTIGQTTLVAIAKDKMGRKYTSTPRHIEVFPPFRLLP 1089
Query: 1005 HDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRS---SGQLFAISPGNTTLIAT 1061
+ L+P + +GGP V ++ +++ +A ++R +G++ + + T+
Sbjct: 1090 EKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTAVVHGTIQTV 1149
Query: 1062 VFGNGDVVI-CQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPL--FPEGDVFSFYELC 1118
G V++ Q ++V +V + A + +L +MP++ + FSF
Sbjct: 1150 NEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQTPFSFSNAN 1209
Query: 1119 --RNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSA 1176
++W++ +L HSE LQ E F ++ ++A
Sbjct: 1210 PGLTFHWSMSKRDVLDLV---PRHSE-VFLQLPV-------------EHNFAMVVHTKAA 1252
Query: 1177 GRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPS 1236
GRT + T C S E + S + ++ L L P L+P
Sbjct: 1253 GRTSIKVTVHCMNSSSGQFEGNLLELSDEVQILVFEKLQL------FYPECQPEQILMPI 1306
Query: 1237 SSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKD-DISIDGDTIKTTSSNHLACIQAKD 1295
+S+ + + + V S + C + +D + + +I T+ + I+
Sbjct: 1307 NSQL--KLHTNREGAAFVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFG 1364
Query: 1296 RSSGRIEIASCVRVAEVAQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPFH 1349
+ I + V+VA V +R+S++ L +G + +Y+++G FH
Sbjct: 1365 VNQTTI---TGVQVAPVTYLRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFH 1421
Query: 1350 EAHNVILYHAETNYHDVVSI-----NYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDY 1404
HN LY A N D++ I NYT +A G LV + R P +DY
Sbjct: 1422 -THNTQLYLA-LNRDDLLHIGPGNKNYTYMA------QAVNRGLTLVGLWDRRHPGMADY 1473
Query: 1405 VLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQ-VSGHWFSDNESVVHVHMPSGKAEAVGI 1463
+ V+V + P + VG + FS S G W +++ + +G A
Sbjct: 1474 IPVAVEHAIEPDTKLTFVGDIICFSTHLVSQHGEPGIWMISANNILQTDIVTGVGVARSP 1533
Query: 1464 GSTKVFFECPSM---KLQTTVTVLSKNIVSIDAPKEVLTN 1500
G+ +F + P + + V S+ ++S D K LTN
Sbjct: 1534 GTAMIFHDIPGVVKTYREVVVNASSRLMLSYDL-KTYLTN 1572
>sp|Q9D2F7|P210L_MOUSE Nuclear pore membrane glycoprotein 210-like OS=Mus musculus
GN=Nup210l PE=2 SV=2
Length = 1881
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 341/1550 (22%), Positives = 622/1550 (40%), Gaps = 244/1550 (15%)
Query: 36 DVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSIL-LTVAEAMSIEPPSP 94
D IE+E D+ +V G+ G +V V + E + +A +++ L V E + + P
Sbjct: 198 DYIIEMEKQERQGDVILVSGMRTGAAVVKVRIYEPFYKKVAAALIRLLVLENIFLIPSHD 257
Query: 95 VFVLVGAALQYKL-KVIRGNIPQVVALPSPH-------HRWS---VSNSSVAQVDNMMGL 143
++LVGA ++Y++ K+++G + +V P H HR + + + SVA +D +
Sbjct: 258 TYLLVGAYIKYRVAKMVQGRMTEV-NFPLEHYTLELQDHRLTNGGLPSKSVALLDEKTAM 316
Query: 144 TQALRLGQTAVI-----VEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAI 198
A++LGQT ++ V V+G S++ VV P L I P
Sbjct: 317 VTAVQLGQTNLVFVHKNVHMRSVSGLPN-STIYVVEPGFLGFSIHP-------------- 361
Query: 199 PSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLK 258
RW + G Y+I ++VF + S +YI SD++K++ S+ + L
Sbjct: 362 --GGRWSLEVGQVYVITVEVFDKS--STRVYI--SDNLKITFQFSKEY----FEEQLSTS 411
Query: 259 HGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSE 318
+G + ++KA G+ + A+LT S L + +I +K +
Sbjct: 412 NG--SYHVVKALKDGVVVINATLT--SSLQERNSSQPKTYQISHQQEVKIYFPIQ--LKP 465
Query: 319 SIL-LPWAP-GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKK-PGKATV 375
S L P P GI + GG S ++ W SS+ +T GVV A + G +T+
Sbjct: 466 SFLAFPHHPLGISNRFTVQVEGG----SGNFTWSSSNETVAMVTTKGVVTAGQVRGNSTI 521
Query: 376 KVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAF 435
+ + +I + V + M +L F + +G ++ + M +N
Sbjct: 522 LARDVQNPSRSGDIKVYVMKLNKMELL-PFQADVEIGQIIEVPIAMYHVN-------TET 573
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++ + S + LN+ K+ F ++ ++H CS H+ A+S G T++ +
Sbjct: 574 KEAIAFTDCSHLPLDLNSDKQGVFTLFKEGIQKPGAMH---CSSVHIAATSPGHTLVTVS 630
Query: 496 LSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEAL 555
++ +H +S+ AAY PL + +
Sbjct: 631 VTGHEEH----------AWSSATFAAYEPL------------------------KALNPV 656
Query: 556 DKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKN--- 612
D + ++ +++ GGP PW +E F ++ + + V +K
Sbjct: 657 DVALVTWQSVKEMVFEGGPHPW-----ILEPSRFFLELSMEKAEAIRVAEVRLPAKRKQN 711
Query: 613 --LYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAIL 670
+Y V C LG L F+ GN G +P P+V +V + C+ PAS+ +
Sbjct: 712 QYVYRVLCLELGEQVLTFRIGNHPGVLNPSPSVEKVQVRFICAHPASMLV---------- 761
Query: 671 NERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGIS--------SSGEAFANSSSL 722
++P + P+ N Q I ++++ S G F N SSL
Sbjct: 762 ---------TPMYKAPSGTQPCPLPQYNKQLIPVSSLRDSVLELAVFDQHGRKFDNFSSL 812
Query: 723 CLGWELSNCDGLAYWDDAY---------GSQKSASSWERFLVLQNESGLCVVRATASGFC 773
L W+ SN + LA+++D+ GS ++ + L + G ++ +G+
Sbjct: 813 MLEWKSSN-ETLAHFEDSKSVEMVARDDGSGQTRLHGHQILKVHQMKGTVLIGVNFAGYS 871
Query: 774 DAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLE 833
K IS S + V L LV + V PE ++ +PD K ++ GS +
Sbjct: 872 GKKSPKG------ISNSPRSAGVELILVEDVTVQPENATIYNHPDVKEIFNLVEGSGYFL 925
Query: 834 AAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWI 893
++ +V I E +QL+ P G + VYD+ LA A A ++V+D+ +
Sbjct: 926 INSSEQDIV-TITYREAESSVQLV--PAHPGFLTLEVYDLCLAYLGPAVAQIRVSDIQEL 982
Query: 894 KIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIV--ELIDDDATS 951
++ +++ + G++ + + F + + M++R+ + IV L++D
Sbjct: 983 ELDLIDKVEI--GKTVLVVVRVLGSSKHPFRNKYFRNMEVRLQLASAIVTLRLMEDQDEY 1040
Query: 952 SPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVP 1011
S + + + A +G TTL A + G + S P +EV+ P R+ P + L+
Sbjct: 1041 SEN--------YMLRAVTVGQTTLVAIATDRMGKKFTSAPRHIEVFPPFRLIPEKMTLIA 1092
Query: 1012 GASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG-NGD--- 1067
+ +GGP + ++ +++ +A ++R GQ+ S G L T+ N D
Sbjct: 1093 TNMMQIMSEGGPQPQSIIHFSISNQTVAVVNR-RGQVTGKSVGTAVLHGTIQTVNEDTGK 1151
Query: 1068 -VVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPL--FPEGDVFSFYEL--CRNYN 1122
+V Q ++V +V + A + +L EMP++ + FSF ++
Sbjct: 1152 VIVFSQDEVQIEVVQLQAVRILAAATRLVTATEMPVYVMGVTSTQTPFSFSNASPLLTFH 1211
Query: 1123 WTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVA 1182
W++ +L HSE LQ A E F ++ ++AGRT +
Sbjct: 1212 WSMSKRDVLDLV---PRHSE-VFLQLPA-------------ENNFAMVVHTKAAGRTTIK 1254
Query: 1183 TTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTS----LLPSSS 1238
T + S E + S + ++ L L Y + L+P +S
Sbjct: 1255 VTVRSENSSSGQLEGNLLELSDEIQILVFEKLQL----------FYANCQPEQILMPMNS 1304
Query: 1239 ESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSS 1298
+ + + + V S + C + +D G +++ S A ++
Sbjct: 1305 QL--KLHTNREGAAFVSSRVLKCFPNSSVIEED----GGGLLRSGSIAGTAVLEVTSIEP 1358
Query: 1299 GRIEIASC--VRVAEVAQIRISNRYP-------LNVIHLAVGAECEIPISYYDALGTPFH 1349
+ + V+VA V +R+S+ YP + +G + +Y+ +G FH
Sbjct: 1359 FGVNQTTITGVQVAPVTYLRLSS-YPKLYTAQGRTLSAFPLGMSLTFIVEFYNNIGEKFH 1417
Query: 1350 EAHNVILYHAETNYHDVVSI-----NYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDY 1404
HN LY A N D++ I NYT +A G +V + R P +DY
Sbjct: 1418 -THNTRLYMA-LNRDDLLLIGPGNRNYTYMA------QAVNKGVTVVGLWDQRHPGMADY 1469
Query: 1405 VLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVS-GHWFSDNESVVHVHMPSGKAEAVGI 1463
+ V+V + P ++ VG + FS + + G W ++V +G A
Sbjct: 1470 IPVAVEHAIEPDTKLIFVGDVICFSTQLVNQHGEPGVWMISTNNIVQTDTATGVGVARNP 1529
Query: 1464 GSTKVFFECPSMK---LQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTF 1510
G+ +F P + + V S+ +S D K LTN P T F
Sbjct: 1530 GTATIFHNIPGVVKTFREVVVNASSRLTLSYDL-KTYLTNTPNATAFKLF 1578
>sp|Q8TEM1|PO210_HUMAN Nuclear pore membrane glycoprotein 210 OS=Homo sapiens GN=NUP210 PE=1
SV=3
Length = 1887
Score = 174 bits (441), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 352/1510 (23%), Positives = 625/1510 (41%), Gaps = 242/1510 (16%)
Query: 40 ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADS-ILLTVAEAMSIEPPSPVFVL 98
E+E + D +V G+ G + + E + ++ + + L + E + + P V+++
Sbjct: 195 EMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLILENILLNPAYDVYLM 254
Query: 99 VGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNS----------SVAQVDNMMGLTQALR 148
VG ++ YK++ IR +++PS + + NS VA + + AL+
Sbjct: 255 VGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPARPVAVLAQDTSMVTALQ 314
Query: 149 LGQTAVIV--EDTRVAGHTQV--SSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARW 204
LGQ+++++ R+ G +++ S++ VV P L + P GD RW
Sbjct: 315 LGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHP----GD------------RW 358
Query: 205 FVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDN-QSECWRTFSMPNDLVLKHGWRN 263
+ +G Y I ++VF + S ++Y+ SD+I++ +E + S + +
Sbjct: 359 VLETGRLYEITIEVFDKF--SNKVYV--SDNIRIETVLPAEFFEVLSSSQN----GSYHR 410
Query: 264 SRILKATSQGL-GKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESIL- 321
R LK + LT+ + G+H + ++ V ++ + + + SIL
Sbjct: 411 IRALKRGQTAIDAALTSVVDQDGGVH--------ILQVPVWNQQEVEIHIPITLYPSILT 462
Query: 322 LPWAP--GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKP-GKATVKVV 378
PW P G YQ T S ++ W SS ++T GV+ G + ++
Sbjct: 463 FPWQPKTGAYQ-----YTIRAHGGSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAH 517
Query: 379 SIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSS 438
+ + ++ E+ + V P SM VE VG L+ + + L S
Sbjct: 518 DVQNPLHFGEMKVYVIEPHSM-EFAPCQVEARVGQALELPLRISGLMPGGASEVVTLSDC 576
Query: 439 VNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPP----CSWAHLYASSSGRTMLHA 494
++ E V N QP +L PP CS + A + G T
Sbjct: 577 SHFDLAVE---VENQGVFQPLPGRL-----------PPGSEHCSGIRVKAEAQGST---- 618
Query: 495 TLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEA 554
TL Y+H G + L A IAAY PL +A D S LG S+
Sbjct: 619 TLLVSYRH------GHVHLSAKITIAAYLPL---KAVDPSSVA--LVTLGSSK------- 660
Query: 555 LDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLY 614
++L GGP PW +E + F +D + + + + S Y
Sbjct: 661 ------------EMLFEGGPRPW-----ILEPSKFFQNVTAEDTDSIGLALFAPHSSRNY 703
Query: 615 G-----VFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAI 669
V CQ LG + GN +P PAV + C+ P+ + L
Sbjct: 704 QQHWILVTCQALGEQVIALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTL--------- 754
Query: 670 LNERKVIQTAAQADRSPGRIR----VTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLG 725
+ T+ Q D S ++ V PV+ + +AA G F N SSL +
Sbjct: 755 ----APVYTSPQLDMSCPLLQQNKQVVPVSSHRNPRLDLAA--YDQEGRRFDNFSSLSIQ 808
Query: 726 WE-----LSNCD-----GLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDA 775
WE L++ + L DD G QK + LV SG + ATA+G+
Sbjct: 809 WESTRPVLASIEPELPMQLVSQDDESG-QKKLHGLQAILV-HEASGTTAITATATGY--- 863
Query: 776 KDGH-HSAQLLEISESF--LTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFL 832
++ H SA+ + + L+ ++ L LV +RV+PE ++ +P +A L I GS +
Sbjct: 864 QESHLSSARTKQPHDPLVPLSASIELILVEDVRVSPEEVTIYNHPGIQAELRIREGSGYF 923
Query: 833 EAAVNDSQVVEVI-QAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD 891
+ + VV+V Q G+ M+ P G++ + ++D+ L P A A+V V+D+
Sbjct: 924 FLNTSTADVVKVAYQEARGVA----MVHPLLPGSSTIMIHDLCLVFPAPAKAVVYVSDIQ 979
Query: 892 --WIKIMSGEEI-SLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELID-D 947
+I+++ EI ++ + +DL F + + +MD+++ I+ L+ D
Sbjct: 980 ELYIRVVDKVEIGKTVKAYVRVLDL-----HKKPFLAKYFPFMDLKLRAASPIITLVALD 1034
Query: 948 DATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDI 1007
+A + ++++ F I +G T+L S ++G I S P ++EV+ P R+ P +
Sbjct: 1035 EALDN-----YTIT-FLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPPFRLMPRKV 1088
Query: 1008 FLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG--- 1064
L+ GA+ +T +GGP + ++ ++E +A + ++G + ++ GN T+ V
Sbjct: 1089 TLLIGATMQVTSEGGPQPQSNILFSISNESVALV-SAAGLVQGLAIGNGTVSGLVQAVDA 1147
Query: 1065 -NGDVVIC-QAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIH--PLFPEGDVFSFYELC-- 1118
G VVI Q V+V + +V + A ++ G +MPI+ + + FSF
Sbjct: 1148 ETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFSFGNAVPG 1207
Query: 1119 RNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGR 1178
++W++ +L L + H + L S + F + GR GR
Sbjct: 1208 LTFHWSVTKRDVLD--LRGRHHEASIRLPS---------------QYNFAMNVLGRVKGR 1250
Query: 1179 TDVATTF-SCDFVSDS-YSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPS 1236
T + + D S Y +R S I + V L L L P + +L S
Sbjct: 1251 TGLRVVVKAVDPTSGQLYGLARELSDEIQVQVFEKLQL---------LNPEIEAEQILMS 1301
Query: 1237 SSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISI--DGDTIKTTSSNHLACIQAK 1294
+ ++ S+ Y +L EK D+ G I T++ + A+
Sbjct: 1302 PNSYIKLQTNRDGAASLSYRVLD-GPEKVPVVHVDEKGFLASGSMIGTSTIE----VIAQ 1356
Query: 1295 DRSSGRIEIASCVRVAEVAQIRISNRYPLN------VIHLAVGAECEIPISYYDALGTPF 1348
+ I V+V+ V+ +R+S L+ ++ + +G + ++D G F
Sbjct: 1357 EPFGANQTIIVAVKVSPVSYLRVSMSPVLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVF 1416
Query: 1349 HEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVS 1408
H AH+ +L A TN D V I + + ++ G L++V P SD++ +
Sbjct: 1417 H-AHSSVLNFA-TNRDDFVQIGKGPTNNTCV-VRTVSVGLTLLRVWDAEHPGLSDFMPLP 1473
Query: 1409 VGAQLYPQ-NPVLHVGGSLDF-----SVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVG 1462
V + P+ + + VG L S+EG SG W S S++H+ +G A A
Sbjct: 1474 VLQAISPELSGAMVVGDVLCLATVLTSLEGL----SGTWSSSANSILHIDPKTGVAVARA 1529
Query: 1463 IGSTKVFFEC 1472
+GS V++E
Sbjct: 1530 VGSVTVYYEV 1539
>sp|P11654|PO210_RAT Nuclear pore membrane glycoprotein 210 OS=Rattus norvegicus GN=Pom210
PE=1 SV=1
Length = 1886
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 332/1496 (22%), Positives = 602/1496 (40%), Gaps = 216/1496 (14%)
Query: 40 ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADS-ILLTVAEAMSIEPPSPVFVL 98
E+E + D +V G+ G + + E + ++ + + L + E + + P V++L
Sbjct: 195 EMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLILENILLNPAYDVYLL 254
Query: 99 VGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNS----------SVAQVDNMMGLTQALR 148
VG ++ YK++ IR +++PS + + NS VA + A++
Sbjct: 255 VGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPDPQGDPARPVAVLTQDTSRVTAMQ 314
Query: 149 LGQTAVIV--EDTRVAGHTQV--SSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARW 204
+GQ+ +++ R+ G +++ S++ VV L + P GD RW
Sbjct: 315 MGQSNLVLGHRSIRMQGASRLPNSTIYVVEAGYLGFTVHP----GD------------RW 358
Query: 205 FVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDN-QSECWRTFSMPNDLVLKHGWRN 263
+ +G Y + ++VF + S ++Y SD+I++ +E + S + H
Sbjct: 359 VLETGHLYAVTIEVFDRS--SNKVY--PSDNIRIEAVFPAEFFEVLSSSQNGSYHH---- 410
Query: 264 SRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSES 319
++A G ++ASLT G+H V ++ V ++ + + + S
Sbjct: 411 ---VRAIQSGQTTISASLTSVVDQDGGVH--------VLQVPVWNQQEVDIHIPITLYPS 459
Query: 320 IL-LPWAP--GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQ-AKKPGKATV 375
IL PW P G YQ + A GG S ++ W SS ++T GV+ G + +
Sbjct: 460 ILTFPWQPKTGAYQYT-IKAHGG----SGNFTWSSSSYMVATVTVKGVMTTGGDTGLSVI 514
Query: 376 KVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAF 435
+ + + ++ E+ + V PSSM VE VG L+ +T+ L
Sbjct: 515 RAHDVQNPLHFGEMKVYVIEPSSM-EFAPCQVEARVGHTLELPLTISGL-------MPGG 566
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
SS V + F ++ + Q L H CS + A + G T T
Sbjct: 567 SSEVVTLSDCSHFDLVVEVENQGVFQPLPGRLPPGPEH---CSGVKVRADAQGST----T 619
Query: 496 LSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEAL 555
L Y H G + L A +AAY PL +A D S LG S+
Sbjct: 620 LLVSYTH------GHVHLGAKITLAAYLPL---KAVDPSSVA--VVTLGSSK-------- 660
Query: 556 DKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYG 615
++L GGP PW +E + F + + + + ++ + Y
Sbjct: 661 -----------EMLFEGGPRPW-----VLEPSKFFRNVTSEDTGSISLSLLGPPASRNYQ 704
Query: 616 -----VFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAIL 670
V CQ LG + GN +P PAV + C+ P+ + L+ P A L
Sbjct: 705 QHRVLVTCQALGEQVIALSVGNRPSLSNPFPAVEPTVVKSVCAPPSRLTLM---PVYA-L 760
Query: 671 NERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWE--- 727
+ + Q ++ +V PV+ + + A G F N SSL + WE
Sbjct: 761 PQLDLSCPLLQQNK-----QVVPVSSHRNPLLDLGA--YDQQGRRFDNFSSLSIQWESFR 813
Query: 728 --LSNCD-----GLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHH 780
L++ + L DD G QK + V SG + ATA+G+ +
Sbjct: 814 PLLASIEVDQPMQLVSQDDGNG-QKKLHGLQTVSV-HEASGTTAISATATGYQQSHLSAA 871
Query: 781 SAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQ 840
+ L ++ ++ L LV +RV+PE ++ +P + L I GS + +
Sbjct: 872 GVKQLRDPLVPVSASIELILVEDVRVSPEEVTIYNHPGVQVELHITEGSGYFFLNTSTQD 931
Query: 841 VVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD--WIKIMSG 898
++ V A + R + M+ P G++ V V+D+ L P A A + V+D+ +++++
Sbjct: 932 IINV--AYQDTRGVA-MVHPLFPGSSTVMVHDLCLTFPAPAKATIHVSDIQELYVRVVDK 988
Query: 899 EEI-SLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELID-DDATSSPDGG 956
EI ++ + +D F + +T+MD+++ I+ L+ D+A +
Sbjct: 989 VEIGKAVKAYVRVLDFYK-----KPFLAKYFTFMDLKLRAASQIITLVTLDEALDN---- 1039
Query: 957 YFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYM 1016
++F + +G T+L S +SG + S ++EV+ P R+ P + L+ GA
Sbjct: 1040 --YTATFLVHGVAIGQTSLSASVTDKSGQRVSSTAQQIEVFPPFRLIPRKVTLIIGAMIQ 1097
Query: 1017 LTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG----NGDVVIC- 1071
+T +GGP + ++ +E +A + S+G + + GN +++ V G V+I
Sbjct: 1098 ITSEGGPQPQSNILFSINNESVAAV-SSAGLVRGLMVGNGSVLGVVQAVDAETGKVIIVS 1156
Query: 1072 QAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIH--PLFPEGDVFSFYELC--RNYNWTIED 1127
Q V+V +V + A ++ G +MP++ + FSF ++W++
Sbjct: 1157 QDHVEVEVLQLQAVRIRAPITRMRTGTQMPVYVTGITSNQSPFSFGNAVPGLTFHWSVTK 1216
Query: 1128 EKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSC 1187
+L L + ++ S + F+ + ++GR GRT +
Sbjct: 1217 RDVL------DLRGRHHEVSIRLSPQYNFAMN-----------VHGRVKGRTGLRVVVKA 1259
Query: 1188 --DFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWD 1245
+ + S I + V L L L P + +L S +
Sbjct: 1260 LDPTAGQLHGLGKELSDEIQIQVFEKLRL---------LNPEVEAEQILMSPNSFIKLQT 1310
Query: 1246 SQSHKGSIVYSLLKFCSEKNEAASKDD--ISIDGDTIKTTSSNHLACIQAKDRSSGRIEI 1303
++ + Y +L EK D+ + G I ++ + A++ +
Sbjct: 1311 NRDGAAILSYRVLD-GPEKAPIVHIDEKGFLVSGSGIGVSTLE----VIAQEPFGTNQTV 1365
Query: 1304 ASCVRVAEVAQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPFHEAHNVILY 1357
V+V+ ++ +RIS L+ H L +G + ++D+ G FH AHN L
Sbjct: 1366 LVAVKVSPISYLRISMSPVLHTQHKEVLTALPLGMTVTFTVHFHDSSGDIFH-AHNSDLN 1424
Query: 1358 HAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQ- 1416
A TN D V I + I ++ G L+ V SD+V + V + P+
Sbjct: 1425 FA-TNRDDFVQIGKGATNNTCI-IRTVSVGLTLLHVWDVEHLGLSDFVPLPVLQAITPEL 1482
Query: 1417 NPVLHVGGSLDFSVEGFS-DQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFE 1471
+ + VG L + S VSG W S +V++V +G A A G V++E
Sbjct: 1483 SGAVVVGDILCLASVLISLGGVSGTWSSSAGNVLYVDPKTGVAIARDAGPVTVYYE 1538
>sp|Q9QY81|PO210_MOUSE Nuclear pore membrane glycoprotein 210 OS=Mus musculus GN=Nup210 PE=1
SV=2
Length = 1886
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 337/1505 (22%), Positives = 597/1505 (39%), Gaps = 234/1505 (15%)
Query: 40 ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADS-ILLTVAEAMSIEPPSPVFVL 98
E+E + D +V G+ G + + E + ++ + + L + E + + P V++L
Sbjct: 195 EMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLILENILLNPAYDVYLL 254
Query: 99 VGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNS----------SVAQVDNMMGLTQALR 148
VG ++ YK++ IR +++PS + + NS VA + A++
Sbjct: 255 VGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPDPQGDPARPVAILTQDTSRVTAMQ 314
Query: 149 LGQTAVIV--EDTRVAGHTQV--SSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARW 204
+GQ+ +++ R+ G +++ S++ VV L + P GD RW
Sbjct: 315 MGQSNLVLGHRSIRMQGASRLPNSTIYVVEAGYLGFTVYP----GD------------RW 358
Query: 205 FVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDN-QSECWRTFSMPNDLVLKHGWRN 263
+ +G Y I ++VF + S ++Y SD+I++ +E + S + H
Sbjct: 359 VLETGHLYAITIEVFDRS--SNKVY--PSDNIRIEAVLPAEFFEVLSSSQNGSYHH---- 410
Query: 264 SRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSES 319
++A G ++A+LT G+H V ++ V ++ + + + S
Sbjct: 411 ---IRAIQSGQTAISATLTSVVDQDGGVH--------VLQVPVWNQQEVDIHIPITLYPS 459
Query: 320 IL-LPWAP--GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAK-KPGKATV 375
IL PW P G YQ T S ++ W SS ++T GV+ G + +
Sbjct: 460 ILTFPWQPKTGAYQ-----YTIKAHGGSGNFSWSSSSSMVATVTVKGVMTTSGDTGLSVI 514
Query: 376 KVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAF 435
+ + + ++ E+ + V PSSM VE VG L+ +T+
Sbjct: 515 RAHDVQNPLHFGEMKVYVIEPSSM-EFAPCQVEARVGHTLELPLTISGF-------MPGG 566
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
S V + F ++ + Q L H CS + A + G T L +
Sbjct: 567 GSEVVTLSDCSHFDLVVEVENQGVFQPLPGRLPPGPEH---CSGVKVKADAQGSTTLLVS 623
Query: 496 LSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEAL 555
+ + H D A +AAY PL +A D S LG S+
Sbjct: 624 YTHGHVHLD----------AKITLAAYLPL---KAVDPSSVA--VVTLGSSK-------- 660
Query: 556 DKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYG 615
++L GGP PW +E + F + + + + ++ + Y
Sbjct: 661 -----------EMLFEGGPRPW-----VLEPSKFFRNVTSEDTGSISLSLLGPPASRNYQ 704
Query: 616 -----VFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAIL 670
+ CQ LG + GN +P PAV + C+ P+ + L+ P A L
Sbjct: 705 QHRVLMTCQALGEQVIALSVGNRPSLSNPFPAVEPTVVKSICAPPSRLTLM---PVYA-L 760
Query: 671 NERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWE--- 727
+ + Q ++ +V PV+ + + A G F N SSL + WE
Sbjct: 761 PQLDLSCPLLQQNK-----QVVPVSSHRNPLLDLGA--YDQQGRRFDNFSSLSIQWESSR 813
Query: 728 -------LSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGF-----CDA 775
L L DD G QK + V SG + ATA+G+ +A
Sbjct: 814 PLLASIELDQPMQLVSQDDGNG-QKKLHGLQTVSV-HEASGTTAISATATGYQQSHLSEA 871
Query: 776 KDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAA 835
+ L+ +S S + L LV +RV+PE ++ +P + L I GS +
Sbjct: 872 RVKQPHDPLVPVSAS-----IELILVEDVRVSPEEMTIYNHPGVQVELYITEGSGYFFLN 926
Query: 836 VNDSQVVEVI-QAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD--W 892
+ +++V Q G+ + +L G++ V V+D+ LA P A A++ V+D+ +
Sbjct: 927 TSTQDIIKVAYQDTRGVALVHPLLP----GSSTVMVHDLCLAFPAPAKAIIHVSDIQELY 982
Query: 893 IKIMSGEEI-SLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELID-DDAT 950
++++ EI ++ + +D F + +T+MD+++ I+ L+ D+A
Sbjct: 983 VRVVDKVEIGKAVKAYVRVLDFYK-----KPFLAKYFTFMDLKLQAASQIITLVTLDEAL 1037
Query: 951 SSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLV 1010
+ ++F + +G T+L S +SG + S P ++EV+ P R+ P + L+
Sbjct: 1038 DN------YTATFLVHGVAIGQTSLSASVTDKSGQRVSSTPQQIEVFPPFRLIPRKVTLI 1091
Query: 1011 PGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG----NG 1066
GA +T +GGP + ++ +E +A + SSG + + GN +++ V G
Sbjct: 1092 IGAMMQITSEGGPQPQSNILFSINNESVAAV-SSSGLVRGLMVGNGSVLGVVQAVDAETG 1150
Query: 1067 DVVIC-QAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEG-----DVFSFYELC-- 1118
V+I Q V+V +V + A ++ G +MP+ F G FSF
Sbjct: 1151 KVIIVSQDLVEVEVLQLQAVRIRAPITRMRTGTQMPV---FVTGITSNQSPFSFGNAVPG 1207
Query: 1119 RNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGR 1178
++W++ +L L + H + L + F +YGR GR
Sbjct: 1208 LTFHWSVTKRDVLD--LRGRHHEVSIRL---------------PPQYNFAMNVYGRVKGR 1250
Query: 1179 TDVATTFSC--DFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPS 1236
T + + + S I + V L L L P + +L S
Sbjct: 1251 TGLRVVVKALDPTAGQLHGLGKELSDEIQIQVFEKLRL---------LNPEIEAEQILMS 1301
Query: 1237 SSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDD--ISIDGDTIKTTSSNHLACIQAK 1294
+ ++ + Y +L EK D+ + G I ++ + A+
Sbjct: 1302 PNSFIKLQTNRDGAAILSYRVLD-GPEKAPIVHTDEKGFLVSGSGIGVSTLE----VIAQ 1356
Query: 1295 DRSSGRIEIASCVRVAEVAQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPF 1348
+ I V+V+ V+ +RIS L+ H L +G + ++D+ G F
Sbjct: 1357 EPFGTNQTILVAVKVSPVSYLRISMSPVLHTQHKEALTALPLGMTVTFIVHFHDSSGDIF 1416
Query: 1349 HEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVS 1408
H AHN +L A TN D V I + I ++ G L+ V SD+V +
Sbjct: 1417 H-AHNSVLNFA-TNRDDFVQIGKGATNNTCI-IRTVSVGLTLLHVWDVEHLGLSDFVPLP 1473
Query: 1409 VGAQLYPQ-NPVLHVGGSLDF-SVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGST 1466
V + P+ + + VG L SV VSG W S V++V +G A A GS
Sbjct: 1474 VLQAITPELSGAVVVGDILCLASVLTSLGGVSGTWSSSASHVLYVDPKTGVAIARDAGSV 1533
Query: 1467 KVFFE 1471
V++E
Sbjct: 1534 TVYYE 1538
>sp|Q07591|EAE_CITFR Intimin OS=Citrobacter freundii GN=eae PE=3 SV=1
Length = 936
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 315 GVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKAT 374
GV+ S+ W Y +V+L ATGG K Y W SS+ S+ SGV+ + G AT
Sbjct: 764 GVTGSLPKNWLQ--YGQVKLQATGGNGK----YTWKSSNTKIASVDNSGVITLNEKGSAT 817
Query: 375 VKVVS 379
+ VVS
Sbjct: 818 ITVVS 822
>sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1
Length = 331
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 333 ELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIE 392
E++ TG DY +S + V++ G A A + + ++ YDEI +
Sbjct: 43 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA-----ALAQCAKLAEARGYDEINLN 97
Query: 393 VSTPSSMVMLRNFPVETVVGSHLQA------------AVTMKTLNG-----AYFYRCDAF 435
V PS V F + + L A VT+KT G +Y + CD F
Sbjct: 98 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD-F 156
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++V+ K E FI+ ++ +L L E + PP + +Y
Sbjct: 157 INTVSGKGECEMFII---HARKAWLSGLSPKE---NREIPPLDYPRVY-----------Q 199
Query: 496 LSKDYQHFDRSFDGPI 511
L +D+ H S +G I
Sbjct: 200 LKRDFPHLTMSINGGI 215
>sp|Q7UBC5|DUSA_SHIFL tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3
SV=2
Length = 330
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 333 ELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIE 392
E++ TG DY +S + V++ G A A + + ++ YDEI +
Sbjct: 42 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA-----ALAQCAKLAEARGYDEINLN 96
Query: 393 VSTPSSMVMLRNFPVETVVGSHLQA------------AVTMKTLNG-----AYFYRCDAF 435
V PS V F + + L A VT+KT G +Y + CD F
Sbjct: 97 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD-F 155
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++V+ K E FI+ ++ +L L E + PP + +Y
Sbjct: 156 INTVSGKGECEMFII---HARKAWLSGLSPKE---NREIPPLDYPRVY-----------Q 198
Query: 496 LSKDYQHFDRSFDGPI 511
L +D+ H S +G I
Sbjct: 199 LKRDFPHLTMSINGGI 214
>sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12)
GN=dusA PE=3 SV=3
Length = 330
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 333 ELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIE 392
E++ TG DY +S + V++ G A A + + ++ YDEI +
Sbjct: 42 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA-----ALAQCAKLAEARGYDEINLN 96
Query: 393 VSTPSSMVMLRNFPVETVVGSHLQA------------AVTMKTLNG-----AYFYRCDAF 435
V PS V F + + L A VT+KT G +Y + CD F
Sbjct: 97 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD-F 155
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++V+ K E FI+ ++ +L L E + PP + +Y
Sbjct: 156 INTVSGKGECEMFII---HARKAWLSGLSPKE---NREIPPLDYPRVY-----------Q 198
Query: 496 LSKDYQHFDRSFDGPI 511
L +D+ H S +G I
Sbjct: 199 LKRDFPHLTMSINGGI 214
>sp|Q8X5V6|DUSA_ECO57 tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA
PE=3 SV=2
Length = 330
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 333 ELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIE 392
E++ TG DY +S + V++ G A A + + ++ YDEI +
Sbjct: 42 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA-----ALAQCAKLAEARGYDEINLN 96
Query: 393 VSTPSSMVMLRNFPVETVVGSHLQA------------AVTMKTLNG-----AYFYRCDAF 435
V PS V F + + L A VT+KT G +Y + CD F
Sbjct: 97 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD-F 155
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++V+ K E FI+ ++ +L L E + PP + +Y
Sbjct: 156 INTVSGKGECEMFII---HARKAWLSGLSPKE---NREIPPLDYPRVY-----------Q 198
Query: 496 LSKDYQHFDRSFDGPI 511
L +D+ H S +G I
Sbjct: 199 LKRDFPHLTMSINGGI 214
>sp|B0K3X8|PRMA_THEPX Ribosomal protein L11 methyltransferase OS=Thermoanaerobacter sp.
(strain X514) GN=prmA PE=3 SV=1
Length = 308
Score = 34.3 bits (77), Expect = 9.3, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 213 LIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQ 272
++++K F G+ ++ ++E D+ +N + ++ + +V+K W + SQ
Sbjct: 84 IVELKSFGIDIGNFDVKVSEVDEADWENNWKQYYKPLKIGKKIVIKPSWE-----EYVSQ 138
Query: 273 G---LGKLTASLTYFSGLHD-TKEVLKVVQEIMVCDRIKFSLDQTNGV 316
G + +L + + +G H+ TK L+ +++I++ + I F + +G+
Sbjct: 139 GEEIIIELDPGMAFGTGTHETTKMCLEFLEDIVMPESIVFDVGCGSGI 186
>sp|B0KA79|PRMA_THEP3 Ribosomal protein L11 methyltransferase OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=prmA PE=3
SV=1
Length = 308
Score = 34.3 bits (77), Expect = 9.9, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 213 LIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQ 272
++++K F G+ ++ ++E D+ +N + ++ + +V+K W + SQ
Sbjct: 84 IVELKSFGIDIGNFDVKVSEVDEADWENNWKQYYKPLKIGKKIVIKPSWE-----EYVSQ 138
Query: 273 G---LGKLTASLTYFSGLHD-TKEVLKVVQEIMVCDRIKFSLDQTNGV 316
G + +L + + +G H+ TK L+ +++I++ + I F + +G+
Sbjct: 139 GEEIIIELDPGMAFGTGTHETTKMCLEFLEDIVMPESIVFDVGCGSGI 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 662,550,787
Number of Sequences: 539616
Number of extensions: 28216705
Number of successful extensions: 68042
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 67835
Number of HSP's gapped (non-prelim): 266
length of query: 1803
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1671
effective length of database: 120,340,147
effective search space: 201088385637
effective search space used: 201088385637
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)