Query 000240
Match_columns 1803
No_of_seqs 206 out of 250
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 00:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1833 Nuclear pore complex, 100.0 6.7E-37 1.4E-41 365.2 34.5 667 559-1423 2-678 (679)
2 KOG1833 Nuclear pore complex, 99.9 6.3E-27 1.4E-31 280.4 16.0 454 985-1479 3-484 (679)
3 smart00635 BID_2 Bacterial Ig- 97.8 9E-05 2E-09 71.9 8.4 70 998-1068 3-77 (81)
4 PF02368 Big_2: Bacterial Ig-l 97.6 7.4E-05 1.6E-09 72.0 4.3 64 1000-1064 5-71 (79)
5 PF02368 Big_2: Bacterial Ig-l 97.5 0.00014 3E-09 70.1 5.7 71 1412-1483 6-79 (79)
6 smart00635 BID_2 Bacterial Ig- 97.2 0.002 4.3E-08 62.6 9.5 64 1411-1475 5-74 (81)
7 TIGR00864 PCC polycystin catio 96.9 6.7 0.00015 58.8 109.3 617 720-1484 1457-2125(2740)
8 TIGR00864 PCC polycystin catio 96.6 9.3 0.0002 57.4 104.1 425 964-1474 1477-1935(2740)
9 COG5492 Bacterial surface prot 92.1 8 0.00017 47.7 19.4 141 888-1065 179-324 (329)
10 COG5492 Bacterial surface prot 91.8 1.3 2.9E-05 54.4 12.2 76 1411-1486 184-264 (329)
11 KOG4289 Cadherin EGF LAG seven 82.5 2.6E+02 0.0056 40.3 40.0 66 371-455 463-530 (2531)
12 PF13629 T2SS-T3SS_pil_N: Pilu 78.2 14 0.00031 35.2 8.9 51 110-160 7-60 (72)
13 PF13629 T2SS-T3SS_pil_N: Pilu 77.8 6.1 0.00013 37.7 6.3 63 1326-1404 5-67 (72)
14 PF08770 SoxZ: Sulphur oxidati 64.2 81 0.0018 32.3 11.1 84 893-988 1-95 (100)
15 PRK02654 putative inner membra 60.9 17 0.00036 44.4 6.3 63 1412-1475 165-241 (375)
16 PF13584 BatD: Oxygen toleranc 57.4 1.2E+02 0.0027 39.3 14.1 96 898-1001 19-115 (484)
17 PF06832 BiPBP_C: Penicillin-B 55.4 37 0.0008 33.6 6.9 60 808-873 17-80 (89)
18 smart00634 BID_1 Bacterial Ig- 48.6 97 0.0021 30.8 8.7 69 698-772 16-85 (92)
19 PF09394 Inhibitor_I42: Chagas 45.0 97 0.0021 30.5 8.1 69 901-981 1-75 (92)
20 PRK14081 triple tyrosine motif 36.8 1.3E+03 0.028 31.6 64.5 484 479-1079 149-664 (667)
21 KOG4289 Cadherin EGF LAG seven 34.3 1.8E+03 0.04 32.7 48.8 99 1250-1370 510-632 (2531)
22 PF06832 BiPBP_C: Penicillin-B 33.6 1.9E+02 0.0041 28.5 8.0 52 328-383 30-83 (89)
23 PF09134 Invasin_D3: Invasin, 30.6 1.8E+02 0.0039 29.9 7.1 77 907-998 21-98 (99)
24 PF02369 Big_1: Bacterial Ig-l 28.2 4E+02 0.0086 27.1 9.4 69 903-980 19-89 (100)
25 PRK10177 putative invasin; Pro 27.6 1.4E+02 0.003 38.2 7.1 37 970-1006 423-459 (465)
26 PF00630 Filamin: Filamin/ABP2 26.8 4.7E+02 0.01 25.9 9.7 70 1324-1395 13-90 (101)
27 PF13908 Shisa: Wnt and FGF in 26.7 1E+02 0.0022 34.7 5.3 16 1762-1777 145-160 (179)
28 PF07347 CI-B14_5a: NADH:ubiqu 25.3 45 0.00098 33.9 1.9 12 1788-1799 49-60 (97)
29 PRK15315 outer membrane protei 24.0 4E+02 0.0087 39.0 10.8 115 1322-1442 215-339 (1865)
30 PF07703 A2M_N_2: Alpha-2-macr 21.4 5.3E+02 0.011 27.1 9.4 115 902-1032 9-127 (136)
31 PF10717 ODV-E18: Occlusion-de 20.7 1.4E+02 0.0031 29.5 4.2 21 1707-1727 26-46 (85)
32 PF02369 Big_1: Bacterial Ig-l 20.3 4E+02 0.0086 27.1 7.7 68 1328-1399 19-92 (100)
33 TIGR03503 conserved hypothetic 20.3 1.8E+03 0.04 28.1 21.5 158 826-1001 37-213 (374)
No 1
>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-37 Score=365.25 Aligned_cols=667 Identities=22% Similarity=0.245 Sum_probs=473.0
Q ss_pred EEeccccEEEEEecccccccccc-ceEEEEE-EecCCCCcccCceeeeeeecCcceEEEEEeccccEEEEEEEEcccCCC
Q 000240 559 YLVPRTHVDVLLVGGPEPWEEDV-DFIETFE-IFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGD 636 (1803)
Q Consensus 559 ~L~~GSs~~~~~~gGP~pw~~e~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~VtC~~lGe~~l~~~vgN~~~~ 636 (1803)
++..||+..+...|||++|..|. .+++... ..++.+ +.+. ..-.|+..|+.+|..+. +.||....
T Consensus 2 ~~~~~st~~~~~~~~p~r~~~e~~~~ik~~t~~~~~~~--------~~~~---~~v~~~is~q~v~~~~~--~~~nl~~i 68 (679)
T KOG1833|consen 2 GRKYGSTPRHIEVGGPFRWLPEKMTLIKTMTQVMSEGG--------PQPQ---SIVHFSISNQTVAVVNR--RGGNLGKI 68 (679)
T ss_pred cccccCccceEEcCCCcccccchhHHHHHHHHHhhccC--------Cccc---eEEEEeecchhhhhhhh--hccccccc
Confidence 35679999999999999997763 4433100 011111 1111 12478899999998877 88999999
Q ss_pred CCCCCceEEEEEEEEeecCCeEEEEEcCCCccccccccccccccccCCCCCceeEEeEEeeCCCeEEEEEEEEcCCCCeE
Q 000240 637 DHPLPAVAEVSLSVTCSFPASIALLVDEPGTAILNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAF 716 (1803)
Q Consensus 637 ~np~Pa~~~~~~~v~C~~P~~L~l~~~eP~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~l~~~r~~~i~v~v~D~~gr~f 716 (1803)
..|.|++.++++.++|..|..+.+..++|. +++..++......| +.+.|+....+....--+.+..|
T Consensus 69 ~~~~~~h~~i~~~~~~~~~~~v~~~~~~q~----~~l~~vr~~~~a~r---------~~van~~~~~va~v~~s~~~~~f 135 (679)
T KOG1833|consen 69 VGPAPVHGEIQTSNECTGPVIVFSQDEVQI----EQLRAVRILAAATR---------LIVANGMPVYVAGVTSTQTPFSF 135 (679)
T ss_pred cccceeehheeeeecccCceEEEEeccchh----hHHHHHHHHhhccc---------eEEecCceEEEEEeecccCccee
Confidence 999999999999999999999999987777 45555444332221 34578776666654444444444
Q ss_pred eecCCceEEEEecCCCcceEEecccCCccCcCcceEEEEEeecceeEEEEEEEeeeeeccCCcccceecccccceeeeeE
Q 000240 717 ANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAV 796 (1803)
Q Consensus 717 ~N~SSL~i~W~~s~~~~la~~e~~~~~~~~~s~~~~~~~l~~~~G~~~I~At~~gy~~~~~~~~~~~~~~~~~~~l~~~i 796 (1803)
.|++-+. +-||+.. +....+|+++..+++..|.+..+ .+.+. ..+...
T Consensus 136 Sns~~~~----------~~~w~~~---~~t~~~~e~~~~~~~~~~~~~~~-~v~~~---~~g~~s--------------- 183 (679)
T KOG1833|consen 136 SNSNPLL----------TFHWSMS---DVTDLVPEHSEVFLQLPGEHNFA-VVHTK---AAGRTS--------------- 183 (679)
T ss_pred cCCCchh----------eeecchh---hhhccccccchHHHhcccceeeE-EEeee---ccccce---------------
Confidence 4443332 2356443 33446788888888899998887 65543 111111
Q ss_pred EEEEeeeeEEcCceeEEeeCCCceEEEEEccceeEEEEEEcCcceEEEEeccCcceeeeEEEeeccceEEEEEEEEeccC
Q 000240 797 RLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLA 876 (1803)
Q Consensus 797 el~lv~~i~l~P~~lti~n~p~~~~~l~i~gGSG~f~~sssn~~Vv~v~~~~~g~~~~~~~vtp~~~G~~~V~v~D~cl~ 876 (1803)
..+++ ..+| .....+...|||+.++..-.++....+... ..+.+.++.|++.|+++|++.|.|+.
T Consensus 184 -----~~~tl-----~~~~--vs~~~~~~t~gs~~~e~~~l~t~~s~v~~p---l~q~~~vl~Pkn~Gq~kl~v~d~g~~ 248 (679)
T KOG1833|consen 184 -----IKVTL-----HCMN--VSSGQFEGTGGSLSDEVQILMTTGSDVGFP---LIQAHDVLNPKNNGQVKLRVSDAGLV 248 (679)
T ss_pred -----eEEEE-----EEee--cccCccccccceeEEEEEeeecccccccch---hhcHHHhcCCCCCceEEEEEeccccc
Confidence 00111 1112 222237899999999998888777766433 46788999999999999999999999
Q ss_pred CCCceeEEEEEeeeeEEEEEecceEEEecCcEEEEEEEEeecCCCeEecCCceeeEEEEEeceeEEEEeecCCCCCCCCC
Q 000240 877 PPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGG 956 (1803)
Q Consensus 877 ~~~~a~a~V~V~di~~Iev~~p~~veVevG~tv~~~v~v~d~~g~~f~~s~~~~mdl~~~~~~~iv~l~~~~~~~~p~~e 956 (1803)
+ .++.|.++|.|+++|+++.+.. +++|.++++.+..-+.+|..|+.++..+||.++......+.+ +
T Consensus 249 ~-~sa~al~rvad~~~l~id~egl--v~~G~s~~vtll~~~~~g~~Feveq~~l~d~qvd~~~lhV~s-----------~ 314 (679)
T KOG1833|consen 249 G-QSADALVRVADIHSLAIDAEGL--VEIGASVEVTLLAQDETGASFEVEQRPLADAQVDASNLHVIS-----------T 314 (679)
T ss_pred c-cccchheeccCccEeeeccccc--ccCCceEEEEEEeecccCCccccccccccccccccccCcccc-----------c
Confidence 9 7999999999999999997666 899999999999999999999999999999998544444444 3
Q ss_pred cccceeEEEEEeEEEEEEEEEEEEecCceEEEEeeEEEEEeCCCcccCCeeEEccCceEEEEEeeCCccceEEEEeecCc
Q 000240 957 YFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDE 1036 (1803)
Q Consensus 957 ~~~~s~~~v~a~~~G~TtLtas~~~~~G~~i~S~~~~I~VfpPL~l~P~~ltLv~Gs~~ql~~~GGP~p~~~v~fss~n~ 1036 (1803)
++...+|.++|.++|.++++++++..+|+...|.++++|+|.|+++.|+.++|+||+++|++++|||+|+....|+-.|.
T Consensus 315 ~~sg~~~tl~A~~lGtttl~vs~~~S~G~vls~~Th~vqlysp~~l~p~~l~l~PGsk~~l~~eGGp~p~~~ld~~~~~n 394 (679)
T KOG1833|consen 315 KVSGLRYTLRANSLGTTTLSVSSKSSSGRVLSSRTHTVQLYSPIFLQPKRLTLIPGSKFQLEVEGGPQPTPPLDFSLNNN 394 (679)
T ss_pred ccccceeEEEeeccccEEEEEEEecccceEeeccceeEEEeccccCCcceEEEecCCceEEEEccCCCCCCcccceeccc
Confidence 33468999999999999999999988899888899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcccceEEEEeeeeEEEEEEEecCCceEEEEEeEEEEEEceeeEEEEeecceeeeccEEeEEEEcc-----CCCc
Q 000240 1037 EIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFP-----EGDV 1111 (1803)
Q Consensus 1037 ~VasV~~~~G~Vta~~~G~t~It~~v~~~~g~~~~e~~~~V~V~~l~~VrI~a~~~rl~~G~~~pv~~~g~-----~g~p 1111 (1803)
.+|.++. ++++++.++|++++.++..-.+|.+ +++..-+.+..+.|+-+.+....+.+|....+++++. +..+
T Consensus 395 ~~A~ie~-s~~l~~~apg~ttiy~~~ivG~gav-~~qti~lsv~glPgi~l~aas~~v~tgdrvtl~~v~~spg~ede~~ 472 (679)
T KOG1833|consen 395 MIASIEP-SILLTSSAPGYTTIYGTVIVGDGAV-TEQTIVLSVAGLPGIILSAASRKVETGDRVTLRLVGVSPGAEDEEP 472 (679)
T ss_pred ceeeccc-ccceEeeccCCcceeeEEEEecCee-EEEEEEeeecCcCceeeecccceeecCceEEEEEEeecCCccccch
Confidence 9999998 9999999999999999544336665 4667778888888899999999999999999998774 2466
Q ss_pred ccccceee--EEEEEECCcceeEEEecccccccccccccccccceeecccccccccceEEEEEEccceEEEEEEEEEEec
Q 000240 1112 FSFYELCR--NYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDF 1189 (1803)
Q Consensus 1112 fsf~n~~l--~f~Ws~s~~~vl~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~f~v~v~~~~~G~t~I~vtv~~~~ 1189 (1803)
|.|..... .-+|.-+ -++.+..+ .+ . .|
T Consensus 473 f~fi~~vvpv~~~~~e~--p~Lnlsar-------------------~~------~-----------t~------------ 502 (679)
T KOG1833|consen 473 FAFIKAVVPVKSHRNEV--PLLNLSAR-------------------KH------F-----------TG------------ 502 (679)
T ss_pred hhhccceeEEeeccCcC--cccChhhh-------------------cc------c-----------cc------------
Confidence 66555542 2234300 00000000 00 0 00
Q ss_pred CCCCcccceeeeeeEEEEEEecccccccCCceeecCCCCcccccccCCcccccccccCCceeEEEEEeecccCCCCcccc
Q 000240 1190 VSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAAS 1269 (1803)
Q Consensus 1190 ~s~~~~~~~~lsasi~I~Vve~L~L~~~~p~~~~l~P~~~~~~llP~s~~~l~~t~~~~gs~~i~Y~il~~~~~~~~v~~ 1269 (1803)
.-..|+++-.+++...+.+ +.|+..- . +-+ + |
T Consensus 503 ------rl~tF~t~t~~~~e~gl~v---------~~~~~di---------n------~~~-----v-----~-------- 534 (679)
T KOG1833|consen 503 ------RLSTFTTETTITVEDGLSV---------VQPEMDI---------N------TVR-----V-----A-------- 534 (679)
T ss_pred ------ccCcceecceeEEeccceE---------EecccCC---------c------cce-----e-----c--------
Confidence 0122334434444444443 2332210 0 000 0 1
Q ss_pred ccceeccCCeEEeeCcceeEEEEEEeccCcceeEEEEEEEcceeEEEEEec-CCcceeeeecCcEEEEEEEEeccCCCcc
Q 000240 1270 KDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNR-YPLNVIHLAVGAECEIPISYYDALGTPF 1348 (1803)
Q Consensus 1270 ~d~~~I~~g~i~t~~~~G~a~i~v~d~~~g~qt~~~~V~Vs~V~~l~i~~~-~~~~~~~lpvG~s~~~~V~~~D~~G~~F 1348 (1803)
.| +++..++....--+++.-.|...+ +.++++++.+.+.|...+ .+.+....++ +......++-.+-+|
T Consensus 535 ~d----N~~l~ktt~~lqA~l~~~~d~tS~---ia~~~~~s~v~q~r~ks~~ip~h~~dsai---le~~~~~v~~l~vt~ 604 (679)
T KOG1833|consen 535 PD----NSQLKKTTAWLQASLSVESDFTSR---IAISADGSLVTQGREKSAAIPVHNVDSAI---LETVLIPVTVLRVTS 604 (679)
T ss_pred CC----CccceeEeecccceEEEeeccccc---eEeecchhhhhccccCCCCCcccccchhh---heeecceeeeeeeEe
Confidence 11 222223333333355555555433 778899999988887655 2444444454 444555666777777
Q ss_pred ccccceEEEEEEEceeeeEEEEeeecCCceEEEEEeeeeeEEEEEEeccCCCceeEEEEeeeeEEecCCCeEEec
Q 000240 1349 HEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVG 1423 (1803)
Q Consensus 1349 ~~~~~~i~l~~~~n~~dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~~~~isdyi~v~V~~~I~P~~~~L~vG 1423 (1803)
.+.+....++.+.++.+++.+..+.. -..-+++..+.|.++.+++...+..-.+|+.+++.....|+..+.+.|
T Consensus 605 l~vhg~ta~~~~~ens~~~FLnt~~~-~pv~yv~~~arG~al~~~sns~n~rph~~vl~p~la~~~~Q~~~i~~~ 678 (679)
T KOG1833|consen 605 LDVHGTTALKSAFENSPLIFLNTGAA-DPVKYVPQEARGVALVSLSNSTNHRPHLLVLIPYLACCVVQHWLISIR 678 (679)
T ss_pred ecccchhhhhhhhcCCceEEeecccc-cceEEeeccccCceeeeeccCCCCCCcceEEeChhhcccccceEEecc
Confidence 77776666778888899999998752 335578888999999999977777777999999999999998877665
No 2
>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.3e-27 Score=280.40 Aligned_cols=454 Identities=16% Similarity=0.152 Sum_probs=371.6
Q ss_pred eEEEEeeEEEEEeCCCcccCCeeEEccCceEEEEEeeCCccceEEEEeecCccEEEEEcccceEEEEeeeeEEEEEEEec
Q 000240 985 HEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG 1064 (1803)
Q Consensus 985 ~~i~S~~~~I~VfpPL~l~P~~ltLv~Gs~~ql~~~GGP~p~~~v~fss~n~~VasV~~~~G~Vta~~~G~t~It~~v~~ 1064 (1803)
++..|.+.-+++++|.|..|+.++|++- ++|.+-+|||+|+..+.|++++++++++.+ .|..++...|...+.+.++-
T Consensus 3 ~~~~st~~~~~~~~p~r~~~e~~~~ik~-~t~~~~~~~~~~~~~v~~~is~q~v~~~~~-~~~nl~~i~~~~~~h~~i~~ 80 (679)
T KOG1833|consen 3 RKYGSTPRHIEVGGPFRWLPEKMTLIKT-MTQVMSEGGPQPQSIVHFSISNQTVAVVNR-RGGNLGKIVGPAPVHGEIQT 80 (679)
T ss_pred ccccCccceEEcCCCcccccchhHHHHH-HHHHhhccCCccceEEEEeecchhhhhhhh-hccccccccccceeehheee
Confidence 3445667789999999999999999987 888889999999999999999999999998 88888999999999988875
Q ss_pred ---CCceEEEEEeEEEEEEceeeEEEEeecceeeeccEEeEEEEccC--CCccccccee--eEEEEEECCcceeEEEecc
Q 000240 1065 ---NGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPE--GDVFSFYELC--RNYNWTIEDEKILGFWLGD 1137 (1803)
Q Consensus 1065 ---~~g~~~~e~~~~V~V~~l~~VrI~a~~~rl~~G~~~pv~~~g~~--g~pfsf~n~~--l~f~Ws~s~~~vl~i~~~~ 1137 (1803)
..++++++.++++.+..|..||+-+..+|+.+-.-||+|++|++ +.+|+|.|.. +.|+|..+ ++.++.+.
T Consensus 81 ~~~~~~~~~v~~~~~~q~~~l~~vr~~~~a~r~~van~~~~~va~v~~s~~~~~fSns~~~~~~~w~~~--~~t~~~~e- 157 (679)
T KOG1833|consen 81 SNECTGPVIVFSQDEVQIEQLRAVRILAAATRLIVANGMPVYVAGVTSTQTPFSFSNSNPLLTFHWSMS--DVTDLVPE- 157 (679)
T ss_pred eecccCceEEEEeccchhhHHHHHHHHhhccceEEecCceEEEEEeecccCcceecCCCchheeecchh--hhhccccc-
Confidence 36888888888888889999999999999999999999998875 8999999997 59999988 66666554
Q ss_pred cccccccccccccccceeecccccccccceEEEEEEccceEEEEEEEEEEecCCCCccc--ceeeeeeEEEEEEeccccc
Q 000240 1138 QLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSE--SRIYSASISLSVVSDLPLA 1215 (1803)
Q Consensus 1138 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~f~v~v~~~~~G~t~I~vtv~~~~~s~~~~~--~~~lsasi~I~Vve~L~L~ 1215 (1803)
|.+.. .+++ -+.+|+ .++++++|++++.+++.|...+.+++. ...++++++++..++..+
T Consensus 158 --~~~~~---------~~~~-----~~~~~~-~v~~~~~g~~s~~~tl~~~~vs~~~~~~t~gs~~~e~~~l~t~~s~v- 219 (679)
T KOG1833|consen 158 --HSEVF---------LQLP-----GEHNFA-VVHTKAAGRTSIKVTLHCMNVSSGQFEGTGGSLSDEVQILMTTGSDV- 219 (679)
T ss_pred --cchHH---------Hhcc-----cceeeE-EEeeeccccceeEEEEEEeecccCccccccceeEEEEEeeecccccc-
Confidence 33443 2344 245788 999999999999999999998888886 467899999999999988
Q ss_pred ccCCceeecCCCCcccccc-cCC--cccccccccCCceeEEEEEeecccCCCCccccccceeccCCeEEee-CcceeEEE
Q 000240 1216 LGIPVTWVLPPHYTSTSLL-PSS--SESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTT-SSNHLACI 1291 (1803)
Q Consensus 1216 ~~~p~~~~l~P~~~~~~ll-P~s--~~~l~~t~~~~gs~~i~Y~il~~~~~~~~v~~~d~~~I~~g~i~t~-~~~G~a~i 1291 (1803)
..|...+++++ |.. +.++ ++ ++.|+...+...+- |-.+......| .+|.+..| +..+++..
T Consensus 220 --------~~pl~q~~~vl~Pkn~Gq~kl-~v-~d~g~~~~sa~al~-rvad~~~l~id----~eglv~~G~s~~vtll~ 284 (679)
T KOG1833|consen 220 --------GFPLIQAHDVLNPKNNGQVKL-RV-SDAGLVGQSADALV-RVADIHSLAID----AEGLVEIGASVEVTLLA 284 (679)
T ss_pred --------cchhhcHHHhcCCCCCceEEE-EE-ecccccccccchhe-eccCccEeeec----ccccccCCceEEEEEEe
Confidence 56666666777 665 7786 77 57776544444443 22222333333 57777666 55666666
Q ss_pred EEEeccC-c-ceeEEEEEEEcceeEEEEEecC----CcceeeeecCcEEEEEEEEeccCCCccccccceEEEEEEEce-e
Q 000240 1292 QAKDRSS-G-RIEIASCVRVAEVAQIRISNRY----PLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNY-H 1364 (1803)
Q Consensus 1292 ~v~d~~~-g-~qt~~~~V~Vs~V~~l~i~~~~----~~~~~~lpvG~s~~~~V~~~D~~G~~F~~~~~~i~l~~~~n~-~ 1364 (1803)
++++... + .|.-.+.++| |..++++.+++ .+.+.+.++| +.+|.+.++.+.|+.|+...-.++|....++ +
T Consensus 285 ~~~~g~~Feveq~~l~d~qv-d~~~lhV~s~~~sg~~~tl~A~~lG-tttl~vs~~~S~G~vls~~Th~vqlysp~~l~p 362 (679)
T KOG1833|consen 285 QDETGASFEVEQRPLADAQV-DASNLHVISTKVSGLRYTLRANSLG-TTTLSVSSKSSSGRVLSSRTHTVQLYSPIFLQP 362 (679)
T ss_pred ecccCCcccccccccccccc-ccccCcccccccccceeEEEeeccc-cEEEEEEEecccceEeeccceeEEEeccccCCc
Confidence 7777766 4 6666677777 88888887775 5588999999 9999999999999999943333567778888 9
Q ss_pred eeEEEEeeecCCceEEEEEeeeeeEEEEEEeccCCCceeEEEEeeeeEEecCCC--eEEec-cEEEEEEeecC-CCceee
Q 000240 1365 DVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNP--VLHVG-GSLDFSVEGFS-DQVSGH 1440 (1803)
Q Consensus 1365 dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~~~~isdyi~v~V~~~I~P~~~--~L~vG-d~~~fs~~~~~-~~~~g~ 1440 (1803)
+++.+.+++ .++.++..|.+.+.++-.-|++++....++.++-+.+++.|... +..+| +.+|+++.+.. .+.+|.
T Consensus 363 ~~l~l~PGs-k~~l~~eGGp~p~~~ld~~~~~n~~A~ie~s~~l~~~apg~ttiy~~~ivG~gav~~qti~lsv~glPgi 441 (679)
T KOG1833|consen 363 KRLTLIPGS-KFQLEVEGGPQPTPPLDFSLNNNMIASIEPSILLTSSAPGYTTIYGTVIVGDGAVTEQTIVLSVAGLPGI 441 (679)
T ss_pred ceEEEecCC-ceEEEEccCCCCCCcccceecccceeecccccceEeeccCCcceeeEEEEecCeeEEEEEEeeecCcCce
Confidence 999999997 58889999999999999999999999999999999999999965 46999 99999987665 577889
Q ss_pred EEeeCCceEEE-eCccceEEEEeee--eEEEEEEeCCc-eEEE
Q 000240 1441 WFSDNESVVHV-HMPSGKAEAVGIG--STKVFFECPSM-KLQT 1479 (1803)
Q Consensus 1441 WssSn~sV~~V-d~~tG~a~A~~~G--~atV~~~~~~~-~t~~ 1479 (1803)
|.++..+.+++ |..|+..+++++| ...++..++++ .++.
T Consensus 442 ~l~aas~~v~tgdrvtl~~v~~spg~ede~~f~fi~~vvpv~~ 484 (679)
T KOG1833|consen 442 ILSAASRKVETGDRVTLRLVGVSPGAEDEEPFAFIKAVVPVKS 484 (679)
T ss_pred eeecccceeecCceEEEEEEeecCCccccchhhhccceeEEee
Confidence 99999999999 9999999999999 88888888885 6666
No 3
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=97.76 E-value=9e-05 Score=71.90 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=59.8
Q ss_pred CCCcccCCeeEEccCceEEEEEeeCCc--c-ceEEEEeecCccEEE-EEcccce-EEEEeeeeEEEEEEEecCCce
Q 000240 998 APPRIHPHDIFLVPGASYMLTLKGGPT--V-GVYVDYTSTDEEIAT-IHRSSGQ-LFAISPGNTTLIATVFGNGDV 1068 (1803)
Q Consensus 998 pPL~l~P~~ltLv~Gs~~ql~~~GGP~--p-~~~v~fss~n~~Vas-V~~~~G~-Vta~~~G~t~It~~v~~~~g~ 1068 (1803)
..++|.|.++.|..|.+.||.+.=-|. + ...+.|+++|++||+ |+. .|+ |+|++.|+++|++++.+....
T Consensus 3 ~~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~~~~v~w~Ssn~~vatvv~~-~G~~vta~~~G~a~Ita~~~~~~~~ 77 (81)
T smart00635 3 TSVTVTPTTASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNPSVATVVNA-SGLVVTAVAAGTATITATSGDGSSA 77 (81)
T ss_pred cEEEEeCCeeEEeCCCeEEEEEEEECCCCCccceEEEEECCCcEEEEECC-CCCEEEEEeceEEEEEEEECCCcce
Confidence 457889999999999999999972222 2 679999999999999 687 999 999999999999999986544
No 4
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=97.55 E-value=7.4e-05 Score=72.05 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=59.1
Q ss_pred CcccCCeeEEccCceEEEEEeeCCccc--eEEEEeecCccEEEEE-cccceEEEEeeeeEEEEEEEec
Q 000240 1000 PRIHPHDIFLVPGASYMLTLKGGPTVG--VYVDYTSTDEEIATIH-RSSGQLFAISPGNTTLIATVFG 1064 (1803)
Q Consensus 1000 L~l~P~~ltLv~Gs~~ql~~~GGP~p~--~~v~fss~n~~VasV~-~~~G~Vta~~~G~t~It~~v~~ 1064 (1803)
+.+.|..+.|..|.+.||...+-|... ..+.|+++|++||+|+ . .|.|+|++.|+++|++++.+
T Consensus 5 I~i~~~~~~l~~G~~~~l~~~~~~~~~~~~~v~w~ssn~~iatV~~~-~G~Vta~~~G~a~Itat~~~ 71 (79)
T PF02368_consen 5 ITITPTSVTLKVGQTQQLTATVTPSDGSNSKVTWSSSNPSIATVDGN-TGKVTALKAGTATITATSGD 71 (79)
T ss_dssp EEETTTEEECETTCEETTEEEEEEEESTTSCEEEEESSTTTEEEETT-TEEEEESSSCEEEEEEEETT
T ss_pred EEEECCEEEEECCCEEEEEEEEEECCCcEeEEEEEeCCCeEEEEECC-CEEEEEEECeEEEEEEEECC
Confidence 568999999999999999999888764 5799999999999999 7 99999999999999999998
No 5
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=97.52 E-value=0.00014 Score=70.12 Aligned_cols=71 Identities=25% Similarity=0.351 Sum_probs=59.4
Q ss_pred EEecCCCeEEeccEEEEEEeecC-C--CceeeEEeeCCceEEEeCccceEEEEeeeeEEEEEEeCCceEEEEEEE
Q 000240 1412 QLYPQNPVLHVGGSLDFSVEGFS-D--QVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTV 1483 (1803)
Q Consensus 1412 ~I~P~~~~L~vGd~~~fs~~~~~-~--~~~g~WssSn~sV~~Vd~~tG~a~A~~~G~atV~~~~~~~~t~~~V~V 1483 (1803)
.|.|....|.+|+..+|.....+ + .....|+|+|++|+.||...|.++|+++|+++|.....+ ....+++|
T Consensus 6 ~i~~~~~~l~~G~~~~l~~~~~~~~~~~~~v~w~ssn~~iatV~~~~G~Vta~~~G~a~Itat~~~-~~~~~~tV 79 (79)
T PF02368_consen 6 TITPTSVTLKVGQTQQLTATVTPSDGSNSKVTWSSSNPSIATVDGNTGKVTALKAGTATITATSGD-NKSATVTV 79 (79)
T ss_dssp EETTTEEECETTCEETTEEEEEEEESTTSCEEEEESSTTTEEEETTTEEEEESSSCEEEEEEEETT-SEEEEEEE
T ss_pred EEECCEEEEECCCEEEEEEEEEECCCcEeEEEEEeCCCeEEEEECCCEEEEEEECeEEEEEEEECC-CceEEEEC
Confidence 57888899999999999987665 2 246799999999999994499999999999999998887 55555554
No 6
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=97.19 E-value=0.002 Score=62.59 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=53.5
Q ss_pred eEEecCCCeEEeccEEEEEEeecCC----CceeeEEeeCCceEE-EeCccce-EEEEeeeeEEEEEEeCCc
Q 000240 1411 AQLYPQNPVLHVGGSLDFSVEGFSD----QVSGHWFSDNESVVH-VHMPSGK-AEAVGIGSTKVFFECPSM 1475 (1803)
Q Consensus 1411 ~~I~P~~~~L~vGd~~~fs~~~~~~----~~~g~WssSn~sV~~-Vd~~tG~-a~A~~~G~atV~~~~~~~ 1475 (1803)
-.|.|....|.+|+..+|.....+. .....|+|||++|++ ||. .|. +.|+++|+++|+....+.
T Consensus 5 i~i~p~~~~l~~G~~~~l~a~~~~~~~~~~~~v~w~Ssn~~vatvv~~-~G~~vta~~~G~a~Ita~~~~~ 74 (81)
T smart00635 5 VTVTPTTASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNPSVATVVNA-SGLVVTAVAAGTATITATSGDG 74 (81)
T ss_pred EEEeCCeeEEeCCCeEEEEEEEECCCCCccceEEEEECCCcEEEEECC-CCCEEEEEeceEEEEEEEECCC
Confidence 3589999999999999999864431 234599999999999 677 999 999999999998876654
No 7
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.86 E-value=6.7 Score=58.75 Aligned_cols=617 Identities=13% Similarity=0.113 Sum_probs=309.0
Q ss_pred CCceEEEEecCCCcceEEecccCCccCcCcceEEEEEeecceeEEEEEEEeeeeeccCCcccceecccccceeeeeEEEE
Q 000240 720 SSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQ 799 (1803)
Q Consensus 720 SSL~i~W~~s~~~~la~~e~~~~~~~~~s~~~~~~~l~~~~G~~~I~At~~gy~~~~~~~~~~~~~~~~~~~l~~~iel~ 799 (1803)
+.+...|.|-+.. .. +++...|.. ...|+-+|+-++..- .... +.++.+.
T Consensus 1457 t~~Sy~WdFGDGs----ts---------t~qnptHtY-~~~GtYtVtLTvtN~---~Gss-------------t~T~~Vt 1506 (2740)
T TIGR00864 1457 RNASYLWDFGDGG----LL---------EGPEILHAF-NSPGDFNIRLAAANE---VGKN-------------EATLNVA 1506 (2740)
T ss_pred CceEEEEECCCCC----cc---------CccceEEEc-CCCceEEEEEEEECC---CCce-------------EEEEEEE
Confidence 3467889997631 10 111123333 578988888887631 1111 1111111
Q ss_pred E---eeeeEEcCceeEEeeCCCceEEEEEcccee-EEEEEEcCcceEEEEeccCcceeeeEEEeeccceEEEEEEEEecc
Q 000240 800 L---VSTLRVNPEYNLLFFNPDAKANLSIAGGSC-FLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGL 875 (1803)
Q Consensus 800 l---v~~i~l~P~~lti~n~p~~~~~l~i~gGSG-~f~~sssn~~Vv~v~~~~~g~~~~~~~vtp~~~G~~~V~v~D~cl 875 (1803)
+ +..+.+.++...++.......+-...+|+. .|.|.-.|...... ++ ....-+=..+|..+|+++-..-
T Consensus 1507 V~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGDg~ts~~----~n---pt~~yTY~spGtYtVtLTvtN~ 1579 (2740)
T TIGR00864 1507 VKARVRGLTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCDHCTPIF----GG---NTIFYTFRSVGTFNIIVTAEND 1579 (2740)
T ss_pred EeccccceEEcCCCccccccceEEEEEEccCCCceeEEEEeCCCCcccc----CC---CceEEeecCCceEEEEEEEecC
Confidence 1 234555555554444443444334457776 89999877433221 11 0112222567988888875443
Q ss_pred CCCCceeEEEEEeee-eEEEEEec------------ceEEEecCcEEEEEEEEeecCCCeEecCCceeeEEEEEeceeEE
Q 000240 876 APPRAASALVQVADV-DWIKIMSG------------EEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIV 942 (1803)
Q Consensus 876 ~~~~~a~a~V~V~di-~~Iev~~p------------~~veVevG~tv~~~v~v~d~~g~~f~~s~~~~mdl~~~~~~~iv 942 (1803)
.+....++.|.|.++ ..+.|... +..-+.-|.++.+...+ .+|. .+.++|....
T Consensus 1580 ~Gs~~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~--~~GT--------nvsysW~~~~--- 1646 (2740)
T TIGR00864 1580 VGAAQASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGF--KDGT--------NLSFSWNAIL--- 1646 (2740)
T ss_pred CCccceeEEEEEeecccceEEEeecccccCCcccccccceeccCCEEEeeecc--CCCC--------eeEEEEEEec---
Confidence 343344566666643 33333311 00003334444444332 2232 2335554310
Q ss_pred EEeecCCCCCCCCCc-ccceeEEEEEeEEEEEEEEEEEEecCceEEEEeeEEEEEeCCCc---ccCCeeEEccCceEEEE
Q 000240 943 ELIDDDATSSPDGGY-FSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPR---IHPHDIFLVPGASYMLT 1018 (1803)
Q Consensus 943 ~l~~~~~~~~p~~e~-~~~s~~~v~a~~~G~TtLtas~~~~~G~~i~S~~~~I~VfpPL~---l~P~~ltLv~Gs~~ql~ 1018 (1803)
.+...++.. .-+..+.++-.+.|.-+++..+...-|.. ++..+|.|-.|+. |....--..+|+.+.+.
T Consensus 1647 ------~n~~dg~~~~~tGk~~~vt~~~pG~Y~VtL~aSN~vG~~--t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs 1718 (2740)
T TIGR00864 1647 ------DNEPDGPAFAGSGKGAKLNPLEAGPCDIFLQAANLLGQA--TADCTIDFLEPAGNLMLQASDNPAAVNALINLS 1718 (2740)
T ss_pred ------CCCCCCccccccCceeEEecCCCceEEEEEEEeecccce--eeEEEEEEEEEcCceEEeccCCcccCCCeEEEE
Confidence 000001000 12456788889999999999998777765 5566677777764 33222223467765555
Q ss_pred E--eeCCccceEEEEeecCccEEEEEcccceE-EEEeeeeEEEEEEEecCCceEEEEEeEEEEEE-ceeeEEEEeecc--
Q 000240 1019 L--KGGPTVGVYVDYTSTDEEIATIHRSSGQL-FAISPGNTTLIATVFGNGDVVICQAFSSVKVG-VPSSVTLNAQSD-- 1092 (1803)
Q Consensus 1019 ~--~GGP~p~~~v~fss~n~~VasV~~~~G~V-ta~~~G~t~It~~v~~~~g~~~~e~~~~V~V~-~l~~VrI~a~~~-- 1092 (1803)
+ .+|. +....|+..+..--.... .-.. +=-..|...|+.++.+.-|... .+..|.|. +..|+.|.+.-.
T Consensus 1719 ~~lt~GS--~vty~W~~gdG~s~~~s~-p~~tHtf~~~G~y~VtVta~N~vss~~--~s~~V~VqepV~GL~i~~~~~~~ 1793 (2740)
T TIGR00864 1719 AELAEGS--GLQYRWFLEEGDDLETSE-PFMSHSFPSAGLHLVTMKAFNELGSAN--ASEEVDVQEPISGLKIRAADAGE 1793 (2740)
T ss_pred EEecCCC--CcEEEEEECCCCCcccCC-CceEEEccCCceEEEEEEEEccccccc--eeEEEEEEeccccceEecCCCCc
Confidence 4 6775 556777766643211111 1112 2345899999999999766543 34556655 447888865443
Q ss_pred --eeeeccEEeEEEEccCCCcccccceeeEEEEEECCcceeEEEecccccccccccccccccceeecccccccccceEEE
Q 000240 1093 --QLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKT 1170 (1803)
Q Consensus 1093 --rl~~G~~~pv~~~g~~g~pfsf~n~~l~f~Ws~s~~~vl~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~f~v~ 1170 (1803)
-+.+|...++....-+|++ ..|.|...+..-. . +-.+.
T Consensus 1794 ~~~~~ag~~v~F~a~vstGsn-------Vsw~W~f~~g~s~----~-----------------------------gk~v~ 1833 (2740)
T TIGR00864 1794 QNFFAADSSVCFQGELATGTN-------VSWCWAIDGGSSK----M-----------------------------GKHAC 1833 (2740)
T ss_pred ccceecCcEEEEEEEccCCCe-------eEEEEEeCCCCcc----c-----------------------------cceeE
Confidence 2455666655544334544 5699988633210 0 11134
Q ss_pred EEEccceEEEEEEEEEEecCCCCcccceeeeeeEEEEEEeccc-ccccCCceeecCCCCcccccccCCcccccccccCCc
Q 000240 1171 LYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLP-LALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSH 1249 (1803)
Q Consensus 1171 v~~~~~G~t~I~vtv~~~~~s~~~~~~~~lsasi~I~Vve~L~-L~~~~p~~~~l~P~~~~~~llP~s~~~l~~t~~~~g 1249 (1803)
.....+|.-+|++++.-.- .. .+++-++.|-+.+. | .|..+.. .+.||-+..| +.....|
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~v--s~------~~~s~~~~VQe~I~~L--------~L~as~~--~~~~n~~v~f-sa~l~~G 1894 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAV--SG------KSASREFFAEEPIFGL--------ELKASKK--IAAIGEKVEF-QILLAAG 1894 (2740)
T ss_pred EecCCCeEEEEEEEEEccc--Cc------ceeeeeEEEEEecceE--------EEecccc--cccCCCEEEE-EEEecCC
Confidence 5557899999999987321 11 12445555555552 2 1122211 2235555554 3322344
Q ss_pred eeEEEEEeecccCCCCccccccceeccCCeE-EeeCcceeEEEEEEeccC-cceeEEEEEE-EcceeEEEEEecCCccee
Q 000240 1250 KGSIVYSLLKFCSEKNEAASKDDISIDGDTI-KTTSSNHLACIQAKDRSS-GRIEIASCVR-VAEVAQIRISNRYPLNVI 1326 (1803)
Q Consensus 1250 s~~i~Y~il~~~~~~~~v~~~d~~~I~~g~i-~t~~~~G~a~i~v~d~~~-g~qt~~~~V~-Vs~V~~l~i~~~~~~~~~ 1326 (1803)
+ .+.|..-=+ +...+.. + ++..+ -+....|.-.|.|+.... +...+...|. ..+|.-|.|...- -.
T Consensus 1895 S-~Vtf~w~fG--dgs~~~~-t----~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c---~~ 1963 (2740)
T TIGR00864 1895 S-AVNFRLQIG--GAAPEVL-Q----PGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCC---AA 1963 (2740)
T ss_pred C-ceEEEEEeC--CCCceee-c----CCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCc---cc
Confidence 3 344433110 1111111 1 22233 556678888888887766 4333333333 3447777776431 11
Q ss_pred eeecCcEEEEEEEEeccCCCccccccceEEEEEE-----EceeeeEEEEeeecCCceEEEEEeeeeeEEEEEEecc--CC
Q 000240 1327 HLAVGAECEIPISYYDALGTPFHEAHNVILYHAE-----TNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNR--SP 1399 (1803)
Q Consensus 1327 ~lpvG~s~~~~V~~~D~~G~~F~~~~~~i~l~~~-----~n~~dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~--~~ 1399 (1803)
.++.|...+|++++ ..|.+-+ +.|. .+-+.++ +..+. ..+.+....|.-+++|.+-+ +.
T Consensus 1964 ~~~~g~~~tF~A~v--~~g~~V~-------f~W~f~~~~~~g~~~~-~~~G~----~vty~~~~~G~~~I~v~A~N~l~s 2029 (2740)
T TIGR00864 1964 GIATGEEKNFTANV--QRGKPVA-------FAWTFDLHHLHGDSLV-IHMGK----DVSYTAEAAGLLEIQLGAFNALGA 2029 (2740)
T ss_pred ceecCceEEEEEEE--ecCCceE-------EEEEeeecccCCCcce-eecCC----ceEEccCCCcEEEEEEEEEcccCc
Confidence 38999999999998 6666633 1121 1122221 12221 11222234555444444332 22
Q ss_pred CceeEEEEeee-----eEEecCCCeEEeccEEEEEEeecCCC--ceeeEEeeCCceEEE-eCccceEEEEeeeeEEEEEE
Q 000240 1400 QKSDYVLVSVG-----AQLYPQNPVLHVGGSLDFSVEGFSDQ--VSGHWFSDNESVVHV-HMPSGKAEAVGIGSTKVFFE 1471 (1803)
Q Consensus 1400 ~isdyi~v~V~-----~~I~P~~~~L~vGd~~~fs~~~~~~~--~~g~WssSn~sV~~V-d~~tG~a~A~~~G~atV~~~ 1471 (1803)
.. --..+.|. ..|........+|-+++|.+...+.+ ..=.|.-.|.+.... |.-+=.=+=..+|.=+|...
T Consensus 2030 ~n-~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~~~~~sHtY~r~G~Y~V~V~ 2108 (2740)
T TIGR00864 2030 EN-ITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDTDEPRAEHEYLHPGDYRVQVN 2108 (2740)
T ss_pred cc-ccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCccccCCceeEEEecCCccEEEEEE
Confidence 11 11122222 24443334566788999997765533 233888888776554 22111111135566555555
Q ss_pred eCCc----eEEEEEEEE
Q 000240 1472 CPSM----KLQTTVTVL 1484 (1803)
Q Consensus 1472 ~~~~----~t~~~V~V~ 1484 (1803)
+.+. .++.+|.|.
T Consensus 2109 a~N~VS~~~a~~~i~V~ 2125 (2740)
T TIGR00864 2109 ASNLVSFFSAHAEINVQ 2125 (2740)
T ss_pred EEcceeeeeeEEEEEEE
Confidence 5552 355555554
No 8
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.63 E-value=9.3 Score=57.37 Aligned_cols=425 Identities=12% Similarity=0.074 Sum_probs=238.6
Q ss_pred EEEEeEEEEEEEEEEEEecCceEEEEeeEEEEEeCCC---cccCCeeEEccCceEEEEE--eeCCccceEEEEeecCccE
Q 000240 964 KIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPP---RIHPHDIFLVPGASYMLTL--KGGPTVGVYVDYTSTDEEI 1038 (1803)
Q Consensus 964 ~v~a~~~G~TtLtas~~~~~G~~i~S~~~~I~VfpPL---~l~P~~ltLv~Gs~~ql~~--~GGP~p~~~v~fss~n~~V 1038 (1803)
.-+=.+.|.-+++.++.+..|.. +....|.|.+|. .+.+..-.+..+.++.+.. .+|- .....|.-.|...
T Consensus 1477 tHtY~~~GtYtVtLTvtN~~Gss--t~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs--~v~ysWdFGDg~t 1552 (2740)
T TIGR00864 1477 LHAFNSPGDFNIRLAAANEVGKN--EATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGD--DVRFSWILCDHCT 1552 (2740)
T ss_pred EEEcCCCceEEEEEEEECCCCce--EEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCC--ceeEEEEeCCCCc
Confidence 33445688899999988777764 556778888874 4566665566676776664 2332 2456677666543
Q ss_pred EEEEcccceE---EEEeeeeEEEEEEEecCCceEEEEEeEEEEEE-ceeeEEEEeecc-------------eeeeccEEe
Q 000240 1039 ATIHRSSGQL---FAISPGNTTLIATVFGNGDVVICQAFSSVKVG-VPSSVTLNAQSD-------------QLAVGHEMP 1101 (1803)
Q Consensus 1039 asV~~~~G~V---ta~~~G~t~It~~v~~~~g~~~~e~~~~V~V~-~l~~VrI~a~~~-------------rl~~G~~~p 1101 (1803)
... .+.. +=.+.|..+|+.++.+..|... +++.|.|. ..+|++|.+... -+.+|..++
T Consensus 1553 s~~---~npt~~yTY~spGtYtVtLTvtN~~Gs~~--~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~ 1627 (2740)
T TIGR00864 1553 PIF---GGNTIFYTFRSVGTFNIIVTAENDVGAAQ--ASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQ 1627 (2740)
T ss_pred ccc---CCCceEEeecCCceEEEEEEEecCCCccc--eeEEEEEeecccceEEEeecccccCCcccccccceeccCCEEE
Confidence 322 2222 4468999999999999776542 24445554 457888876532 345566666
Q ss_pred EEEEccCCCcccccceeeEEEEEECCcceeEEEecccccccccccccccccceeecccccccccceEEEEEEccceEEEE
Q 000240 1102 IHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDV 1181 (1803)
Q Consensus 1102 v~~~g~~g~pfsf~n~~l~f~Ws~s~~~vl~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~f~v~v~~~~~G~t~I 1181 (1803)
+.+-.-+|++ .+|.|..-+.+- +.+ ...+ ..+-...+.-..+|.-+|
T Consensus 1628 l~~~~~~GTn-------vsysW~~~~~n~----~dg---~~~~-------------------~tGk~~~vt~~~pG~Y~V 1674 (2740)
T TIGR00864 1628 FHAGFKDGTN-------LSFSWNAILDNE----PDG---PAFA-------------------GSGKGAKLNPLEAGPCDI 1674 (2740)
T ss_pred eeeccCCCCe-------eEEEEEEecCCC----CCC---cccc-------------------ccCceeEEecCCCceEEE
Confidence 6644334544 679997732110 000 0000 012234566688999999
Q ss_pred EEEEEEecCCCCcccceeeeeeEEEEEEecccccccCCceeecCCCCcccccccCCcccccccccCCceeEEEEEeeccc
Q 000240 1182 ATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFC 1261 (1803)
Q Consensus 1182 ~vtv~~~~~s~~~~~~~~lsasi~I~Vve~L~L~~~~p~~~~l~P~~~~~~llP~s~~~l~~t~~~~gs~~i~Y~il~~~ 1261 (1803)
++++.-. .+ ..+++-.+.+.|++.= |.+. ..+. ...+|....| ......|+ .+.|+.-= +
T Consensus 1675 tL~aSN~---vG-----~~t~s~~i~v~epi~~-L~L~----aS~~----~aavn~~V~f-s~~lt~GS-~vty~W~~-g 1734 (2740)
T TIGR00864 1675 FLQAANL---LG-----QATADCTIDFLEPAGN-LMLQ----ASDN----PAAVNALINL-SAELAEGS-GLQYRWFL-E 1734 (2740)
T ss_pred EEEEeec---cc-----ceeeEEEEEEEEEcCc-eEEe----ccCC----cccCCCeEEE-EEEecCCC-CcEEEEEE-C
Confidence 9998732 12 1256666777776531 1111 1121 1224554444 32234553 35565432 0
Q ss_pred CCCCccccccceeccCCe-EEeeCcceeEEEEEEeccC-cceeEEEEEEEcc-eeEEEEEecCCcceeeeecCcEEEEEE
Q 000240 1262 SEKNEAASKDDISIDGDT-IKTTSSNHLACIQAKDRSS-GRIEIASCVRVAE-VAQIRISNRYPLNVIHLAVGAECEIPI 1338 (1803)
Q Consensus 1262 ~~~~~v~~~d~~~I~~g~-i~t~~~~G~a~i~v~d~~~-g~qt~~~~V~Vs~-V~~l~i~~~~~~~~~~lpvG~s~~~~V 1338 (1803)
+.... .. .+-. .-+....|.-.|+++.... |.......|.|.+ |.-|.|+...+.....+|.|.++.|.-
T Consensus 1735 -dG~s~--~~----s~p~~tHtf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a 1807 (2740)
T TIGR00864 1735 -EGDDL--ET----SEPFMSHSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQG 1807 (2740)
T ss_pred -CCCCc--cc----CCCceEEEccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEE
Confidence 11111 00 2232 3677788988888877666 5444566677755 777888755422333688888887766
Q ss_pred EEeccCCCccccccceEEEEEEEceeeeEEEEeeecCCceEEEEEeeeeeEEEEEEeccCCC-ceeEEEEeee-----eE
Q 000240 1339 SYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQ-KSDYVLVSVG-----AQ 1412 (1803)
Q Consensus 1339 ~~~D~~G~~F~~~~~~i~l~~~~n~~dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~~~~-isdyi~v~V~-----~~ 1412 (1803)
++ +.|...+ ..|... |--. . ..........+.|.-++++.+.+.-+ ..-.-.+.|+ ..
T Consensus 1808 ~v--stGsnVs-------w~W~f~--~g~s----~-~gk~v~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~ 1871 (2740)
T TIGR00864 1808 EL--ATGTNVS-------WCWAID--GGSS----K-MGKHACMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLE 1871 (2740)
T ss_pred Ec--cCCCeeE-------EEEEeC--CCCc----c-ccceeEEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEE
Confidence 52 2444332 344442 1110 1 11234566677777776655333322 2122233333 35
Q ss_pred EecCCCeEEeccEEEEEEeecC-CCceeeEEeeCCceEEEeCccceEEE--EeeeeEEEEEEeCC
Q 000240 1413 LYPQNPVLHVGGSLDFSVEGFS-DQVSGHWFSDNESVVHVHMPSGKAEA--VGIGSTKVFFECPS 1474 (1803)
Q Consensus 1413 I~P~~~~L~vGd~~~fs~~~~~-~~~~g~WssSn~sV~~Vd~~tG~a~A--~~~G~atV~~~~~~ 1474 (1803)
+...+....+|+.+.|++...+ -...=.|+..+.+....++ ...+.= ..+|.=.|...+.+
T Consensus 1872 L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~-~~t~~HsY~~~G~Y~VtV~A~N 1935 (2740)
T TIGR00864 1872 LKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQP-GPRFSHSFPRVDDHMVNLRAKN 1935 (2740)
T ss_pred EecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecC-CCeEEeecCCCCcEEEEEEEEe
Confidence 6777788999999999986554 2344499999877666655 222221 25676666665555
No 9
>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]
Probab=92.13 E-value=8 Score=47.69 Aligned_cols=141 Identities=20% Similarity=0.140 Sum_probs=99.0
Q ss_pred eeeeEEEEEecceEEEecCcEEEEEEEEee--cCCCeEecCCceeeEEEEEecee-EEEEeecCCCCCCCCCcccceeEE
Q 000240 888 ADVDWIKIMSGEEISLMEGRSQSIDLMAGI--DDGSTFDSFQYTYMDIRVHIEDH-IVELIDDDATSSPDGGYFSMSSFK 964 (1803)
Q Consensus 888 ~di~~Iev~~p~~veVevG~tv~~~v~v~d--~~g~~f~~s~~~~mdl~~~~~~~-iv~l~~~~~~~~p~~e~~~~s~~~ 964 (1803)
.-+..+.+. |.--++.+|++..+.+.+.. ..++. +.|...+. +..+ ......
T Consensus 179 ~~~~gvtl~-k~s~~l~vG~t~tlta~v~P~~at~K~----------v~wtSsd~s~atv--------------~~~~g~ 233 (329)
T COG5492 179 VPVTGITVN-KTSDTLKVGDTDTLTATVTPDNATDKT----------VTWTSSDPSKATV--------------DDNTGK 233 (329)
T ss_pred eeeeeeeec-CCccceEeeeeEEEEEEEcCCCCCCCc----------eeEecCCCceeEe--------------cCCceE
Confidence 445677777 55556999999999999874 22222 44443433 3331 134789
Q ss_pred EEEeEEEEEEEEEEEEecCceEEEEeeEEEEEeCCCcccCCeeEEccCceEEEEEeeCCcc--ceEEEEeecCccEEEEE
Q 000240 965 IMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTV--GVYVDYTSTDEEIATIH 1042 (1803)
Q Consensus 965 v~a~~~G~TtLtas~~~~~G~~i~S~~~~I~VfpPL~l~P~~ltLv~Gs~~ql~~~GGP~p--~~~v~fss~n~~VasV~ 1042 (1803)
|+|++.|.+.++++.. .|..-....+.|..+.. |.++..-++.-.|=|.+ +..+.|.+++..++.++
T Consensus 234 Itav~~Gs~~It~tt~--dGs~~a~~~VtV~~~~~---------~~~~~~~~~~~~~~~~~~~d~~~~~t~~~~~~~~~~ 302 (329)
T COG5492 234 ITAVAAGTANITATTN--DGSKTATCKVTVNKATD---------LTVSYNAHVTNTGWQTDASDKVVAGTSSNSNIAEVD 302 (329)
T ss_pred EEEEecCCceEEEEec--ccccceeEEEEeccccc---------cceeeeeeeeeeecccccccceEEeeecCCceeEee
Confidence 9999999999999986 34333334444444433 44444446666665554 78999999999999999
Q ss_pred cccceEEEEeeeeEEEEEEEecC
Q 000240 1043 RSSGQLFAISPGNTTLIATVFGN 1065 (1803)
Q Consensus 1043 ~~~G~Vta~~~G~t~It~~v~~~ 1065 (1803)
. .|++.+.+.|+.++++...+.
T Consensus 303 ~-~~~~~~~~~~~~t~~a~~~n~ 324 (329)
T COG5492 303 A-IGLINAPSGGKITYTATTDNV 324 (329)
T ss_pred c-ceeEecCCCCceEEEEEEeec
Confidence 8 999999999999999988764
No 10
>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]
Probab=91.78 E-value=1.3 Score=54.37 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=64.1
Q ss_pred eEEecCCCeEEeccEEEEEEeecC---CCceeeEEeeCCceEEEeCccceEEEEeeeeEEEEEEeC-Cc-eEEEEEEEEe
Q 000240 1411 AQLYPQNPVLHVGGSLDFSVEGFS---DQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECP-SM-KLQTTVTVLS 1485 (1803)
Q Consensus 1411 ~~I~P~~~~L~vGd~~~fs~~~~~---~~~~g~WssSn~sV~~Vd~~tG~a~A~~~G~atV~~~~~-~~-~t~~~V~V~~ 1485 (1803)
-.+.|....|.+|+...|+..-.| -+.+..|.|||++++.+|..+|..+|.+.|++.|.+..- |. .....|+|..
T Consensus 184 vtl~k~s~~l~vG~t~tlta~v~P~~at~K~v~wtSsd~s~atv~~~~g~Itav~~Gs~~It~tt~dGs~~a~~~VtV~~ 263 (329)
T COG5492 184 ITVNKTSDTLKVGDTDTLTATVTPDNATDKTVTWTSSDPSKATVDDNTGKITAVAAGTANITATTNDGSKTATCKVTVNK 263 (329)
T ss_pred eeecCCccceEeeeeEEEEEEEcCCCCCCCceeEecCCCceeEecCCceEEEEEecCCceEEEEecccccceeEEEEecc
Confidence 588999999999999999987665 466789999999999988889999999999999988764 43 5566788885
Q ss_pred c
Q 000240 1486 K 1486 (1803)
Q Consensus 1486 ~ 1486 (1803)
.
T Consensus 264 ~ 264 (329)
T COG5492 264 A 264 (329)
T ss_pred c
Confidence 3
No 11
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=82.53 E-value=2.6e+02 Score=40.32 Aligned_cols=66 Identities=27% Similarity=0.332 Sum_probs=41.5
Q ss_pred ceEEEEEEeecCCcceeEEEEEEecccceEEeeCccEEEEeCcEEEEEEEEEec-CCcccccCCCCcceEEEe-eCCcce
Q 000240 371 GKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTL-NGAYFYRCDAFSSSVNWK-AGSESF 448 (1803)
Q Consensus 371 G~t~I~a~d~~n~~n~~~~~V~V~~p~~i~~~p~~~~E~~Vg~~l~L~v~~~~s-~G~~Fs~C~~l~~~vews-~~~~vf 448 (1803)
|-+ |.|-|+.+. +-+.|+.|.++..+. -..+.++..++.+.|. +|.. ..++++ .+-+-|
T Consensus 463 gl~-iqVlDINDh-----aPifvstpfq~tvlE-----nv~lg~~v~~vqaidadsg~n--------a~l~y~laG~~pf 523 (2531)
T KOG4289|consen 463 GLV-IQVLDINDH-----APIFVSTPFQATVLE-----NVPLGYLVCHVQAIDADSGEN--------ARLHYSLAGVGPF 523 (2531)
T ss_pred ceE-EEEEecCCC-----CceeEechhhhhhhh-----cccccceEEEEecccCCCCcc--------cceeeeeccCCCe
Confidence 444 778888655 567888887775553 2336778789999885 4421 123444 366778
Q ss_pred EEecCCc
Q 000240 449 IVLNATK 455 (1803)
Q Consensus 449 ~i~~~~~ 455 (1803)
+|.++++
T Consensus 524 ~I~~~SG 530 (2531)
T KOG4289|consen 524 QINNGSG 530 (2531)
T ss_pred eEecCCc
Confidence 7766644
No 12
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=78.23 E-value=14 Score=35.24 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=42.8
Q ss_pred EEcCceeEEecCCCceEEEEeCCceEEE---ecCcceEEEEEeeceEEEEEecc
Q 000240 110 IRGNIPQVVALPSPHHRWSVSNSSVAQV---DNMMGLTQALRLGQTAVIVEDTR 160 (1803)
Q Consensus 110 ~~q~~~~~i~lPs~~y~~~~~n~~Va~v---d~~~~~vtA~~lG~T~V~l~d~n 160 (1803)
+..|+-+.+.+|.+-+.-.+.|.+||.+ +++.=+++|.+.|.|++++-|++
T Consensus 7 l~~g~s~~l~~~~~~~rV~v~dp~Iadv~~~~~~~v~i~gk~~G~T~l~vw~~~ 60 (72)
T PF13629_consen 7 LTVGQSRILRLPGPITRVAVGDPEIADVTVLSPNEVYITGKKPGTTTLIVWDKD 60 (72)
T ss_pred EeCCCEEEEEcCCCcEEEEECCCCEEEEEEeCCCEEEEEEeCceeEEEEEECCC
Confidence 4556677788888999999999999887 44556999999999999999985
No 13
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=77.83 E-value=6.1 Score=37.69 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=45.5
Q ss_pred eeeecCcEEEEEEEEeccCCCccccccceEEEEEEEceeeeEEEEeeecCCceEEEEEeeeeeEEEEEEeccCCCceeE
Q 000240 1326 IHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDY 1404 (1803)
Q Consensus 1326 ~~lpvG~s~~~~V~~~D~~G~~F~~~~~~i~l~~~~n~~dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~~~~isdy 1404 (1803)
..|++|.+..+.+. . .+ -.+...++++..+..-+ ++.+.+.|.+.|.|+|.+||+++..+..|
T Consensus 5 l~l~~g~s~~l~~~------~-------~~-~rV~v~dp~Iadv~~~~--~~~v~i~gk~~G~T~l~vw~~~~~~~~~~ 67 (72)
T PF13629_consen 5 LTLTVGQSRILRLP------G-------PI-TRVAVGDPEIADVTVLS--PNEVYITGKKPGTTTLIVWDKDGRVIQTY 67 (72)
T ss_pred EEEeCCCEEEEEcC------C-------Cc-EEEEECCCCEEEEEEeC--CCEEEEEEeCceeEEEEEECCCCCEEEEE
Confidence 45777777776441 1 11 24677788888888753 34899999999999999999988754333
No 14
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=64.23 E-value=81 Score=32.33 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=49.5
Q ss_pred EEEEecceEEEecCcEEEEEEEEee---------cCCCeEecCCceeeEEEEEecee-EEEEeecCC-CCCCCCCcccce
Q 000240 893 IKIMSGEEISLMEGRSQSIDLMAGI---------DDGSTFDSFQYTYMDIRVHIEDH-IVELIDDDA-TSSPDGGYFSMS 961 (1803)
Q Consensus 893 Iev~~p~~veVevG~tv~~~v~v~d---------~~g~~f~~s~~~~mdl~~~~~~~-iv~l~~~~~-~~~p~~e~~~~s 961 (1803)
|.|.+|.. ...|..+++.+.+.. .+|+...+.+... +.+..+++ ++.+.-..+ ..+| --
T Consensus 1 mrir~p~~--~~~g~~~~vk~li~HPMetGl~~d~tg~~iPa~~I~~--v~v~~ng~~v~~~~~~~siS~NP------~l 70 (100)
T PF08770_consen 1 MRIRVPKA--AKKGGVVEVKALISHPMETGLRKDQTGKYIPAHFIEE--VEVTYNGKPVFRADWGPSISENP------YL 70 (100)
T ss_dssp EEEE-SSC--EETTEEEEEEEEE----B-S-BB-TTS-BB--B-EEE--EEEEETTEEEEEEEE-TTB-SS-------EE
T ss_pred Ceeecccc--ccCCCcEEEEEEEECCCccccccCCCCCCCChHheEE--EEEEECCEEEEEEEeCCcccCCC------cE
Confidence 45666776 688999999998865 3444445556554 44445555 666643211 1233 36
Q ss_pred eEEEEEeEEEEEEEEEEEEecCceEEE
Q 000240 962 SFKIMAKHLGITTLYVSARQQSGHEIL 988 (1803)
Q Consensus 962 ~~~v~a~~~G~TtLtas~~~~~G~~i~ 988 (1803)
.|.++|...| +|++..+|..|+...
T Consensus 71 ~F~~~~~~~g--~l~v~~~Dn~G~~~~ 95 (100)
T PF08770_consen 71 RFSFKGKKSG--TLTVTWTDNKGNSFS 95 (100)
T ss_dssp EEEEEESSSE--EEEEEEEETTS-EEE
T ss_pred EEEEecCCCc--EEEEEEEECCCCEEE
Confidence 8999999999 888888888887643
No 15
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=60.85 E-value=17 Score=44.45 Aligned_cols=63 Identities=24% Similarity=0.354 Sum_probs=51.2
Q ss_pred EEecCCCeEEeccEEEEEEee---cC----------CCceeeEEeeC-CceEEEeCccceEEEEeeeeEEEEEEeCCc
Q 000240 1412 QLYPQNPVLHVGGSLDFSVEG---FS----------DQVSGHWFSDN-ESVVHVHMPSGKAEAVGIGSTKVFFECPSM 1475 (1803)
Q Consensus 1412 ~I~P~~~~L~vGd~~~fs~~~---~~----------~~~~g~WssSn-~sV~~Vd~~tG~a~A~~~G~atV~~~~~~~ 1475 (1803)
++.|.-..|.+|+..++.... .+ ..-.-+|+..- +..++||+ .|..+|+++|.|||...+||+
T Consensus 165 a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~~~~~~~-~g~~~al~pgd~ti~~~ipg~ 241 (375)
T PRK02654 165 ASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVKVSE-DGTIEALAPGDATIQGTIPGL 241 (375)
T ss_pred EEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCceeEEECC-CCcEEEecCCceEEEEeecce
Confidence 478888889999999988642 22 01122999886 78999999 999999999999999999987
No 16
>PF13584 BatD: Oxygen tolerance
Probab=57.40 E-value=1.2e+02 Score=39.33 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=63.2
Q ss_pred cceEEEecCcEEEEEEEEeecCCCeEecCCceeeEEEEEeceeEEEEeecCCCCCCCCCcccceeEEEEEeEEEEEEEE-
Q 000240 898 GEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLY- 976 (1803)
Q Consensus 898 p~~veVevG~tv~~~v~v~d~~g~~f~~s~~~~mdl~~~~~~~iv~l~~~~~~~~p~~e~~~~s~~~v~a~~~G~TtLt- 976 (1803)
.++.+|.+|..+.+.+++.+ ++..++...+..+++.-..-++..++.. +... +...-.|.+++...|.-+|=
T Consensus 19 vd~~~v~~ge~~~l~i~~~~-~~~~~~~p~l~~f~v~~~~~s~~~~~in--G~~~----~~~~~~~~l~p~~~G~~~IP~ 91 (484)
T PF13584_consen 19 VDRNEVGLGETFQLTITING-DGDDPDLPELDGFEVLGPSQSSSTSIIN--GKVS----SSTTYTYTLQPKKTGTFTIPP 91 (484)
T ss_pred ECCcEEcCCCEEEEEEEEec-CcccCCCCCCCCeEEcceEEEEEEEEec--CceE----EEEEEEEEEEecccceEEEce
Confidence 45555899999999999976 6677777776655552221222223321 1111 12256799999999999973
Q ss_pred EEEEecCceEEEEeeEEEEEeCCCc
Q 000240 977 VSARQQSGHEILSQPIRVEVYAPPR 1001 (1803)
Q Consensus 977 as~~~~~G~~i~S~~~~I~VfpPL~ 1001 (1803)
+++. -.|+.+.|.+++|+|-+.=.
T Consensus 92 ~~v~-v~Gk~~~S~pi~i~V~~~~~ 115 (484)
T PF13584_consen 92 FTVE-VDGKTYKSQPITIEVSKASQ 115 (484)
T ss_pred EEEE-ECCEEEeecCEEEEEEeccc
Confidence 3332 27899999999999986543
No 17
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=55.37 E-value=37 Score=33.57 Aligned_cols=60 Identities=25% Similarity=0.274 Sum_probs=45.2
Q ss_pred CceeEEeeCCC----ceEEEEEccceeEEEEEEcCcceEEEEeccCcceeeeEEEeeccceEEEEEEEEe
Q 000240 808 PEYNLLFFNPD----AKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDV 873 (1803)
Q Consensus 808 P~~lti~n~p~----~~~~l~i~gGSG~f~~sssn~~Vv~v~~~~~g~~~~~~~vtp~~~G~~~V~v~D~ 873 (1803)
++...++..|+ .+..|++.||.+.+.|..++.-+.+.. ..+++...|..+|..+|+|.|-
T Consensus 17 ~~g~~~~~~~~~~~~~~l~l~a~~~~~~~~W~vdg~~~g~~~------~~~~~~~~~~~~G~h~l~vvD~ 80 (89)
T PF06832_consen 17 PDGAVLALDPGIPERQPLVLKAAGGRGPVYWFVDGEPLGTTQ------PGHQLFWQPDRPGEHTLTVVDA 80 (89)
T ss_pred CCCCEEEeCCCCCccceEEEEEeCCCCcEEEEECCEEcccCC------CCCeEEeCCCCCeeEEEEEEcC
Confidence 45566776663 466778999999999999986553321 1245888888999999999985
No 18
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=48.64 E-value=97 Score=30.85 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=44.6
Q ss_pred CCCeEEEEEEEEcCCCCeEeecCCceEEEEecCCCcceEEecccCCccCcCcceEEEEEe-ecceeEEEEEEEeee
Q 000240 698 NGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQ-NESGLCVVRATASGF 772 (1803)
Q Consensus 698 ~~r~~~i~v~v~D~~gr~f~N~SSL~i~W~~s~~~~la~~e~~~~~~~~~s~~~~~~~l~-~~~G~~~I~At~~gy 772 (1803)
......|.+.+.|++|++.-+ ..+.|+.+. .....++.... .-+..|.- ...++ ...|..+|+|++.|+
T Consensus 16 g~d~~~i~v~v~D~~Gnpv~~---~~V~f~~~~-~~~~~~~~~~~-~Td~~G~a-~~~l~~~~~G~~~vta~~~~~ 85 (92)
T smart00634 16 GSDAITLTATVTDANGNPVAG---QEVTFTTPS-GGALTLSKGTA-TTDANGIA-TVTLTSTTAGVYTVTASLENG 85 (92)
T ss_pred CcccEEEEEEEECCCCCCcCC---CEEEEEECC-CceeeccCCee-eeCCCCEE-EEEEECCCCcEEEEEEEECCC
Confidence 346789999999999999966 569999886 33222322111 12334432 22333 578999999998875
No 19
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=44.99 E-value=97 Score=30.55 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=43.0
Q ss_pred EEEecCcEEEEEEEEeecCCCeEecCCceeeEEEEEeceeEEEEee-----c-CCCCCCCCCcccceeEEEEEeEEEEEE
Q 000240 901 ISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELID-----D-DATSSPDGGYFSMSSFKIMAKHLGITT 974 (1803)
Q Consensus 901 veVevG~tv~~~v~v~d~~g~~f~~s~~~~mdl~~~~~~~iv~l~~-----~-~~~~~p~~e~~~~s~~~v~a~~~G~Tt 974 (1803)
|.+.+|+++.+.+.....+|-. |.+..+.+.+.+.. . .....+|.. +...|.++|++.|+++
T Consensus 1 I~v~~g~~~~I~L~~npstGY~----------W~~~~~~~~l~l~~~~~~~~~~~~~~vG~~--g~~~f~f~a~~~G~~~ 68 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPSTGYS----------WSLSSDSDGLQLVSEEYIPDNSPSGLVGAP--GTRTFTFKALKPGTTT 68 (92)
T ss_dssp -EEETTSEEEEEEEEBCCGTBE----------EEECTSTTTEEEEEEEEEESSTSSTSSTSS--EEEEEEEEESSSEEEE
T ss_pred CeecCCCEEEEEECCCCCCCeE----------EEEecCCCeEEEcCCcEEeCCCCcCCCCCC--cEEEEEEEEecCeeEE
Confidence 3588999999998876666643 22222222333321 1 111133332 3567999999999999
Q ss_pred EEEEEEe
Q 000240 975 LYVSARQ 981 (1803)
Q Consensus 975 Ltas~~~ 981 (1803)
|.+.+..
T Consensus 69 i~~~y~r 75 (92)
T PF09394_consen 69 IKFEYRR 75 (92)
T ss_dssp EEEEEEB
T ss_pred EEEEEEC
Confidence 9999974
No 20
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=36.78 E-value=1.3e+03 Score=31.63 Aligned_cols=484 Identities=12% Similarity=0.095 Sum_probs=260.4
Q ss_pred eEEEEEeceeeEEEEEEEeeccccccccCCCceEEEEEEEEEeecCceeeccCCCCCCCCcccccccccccccccCCceE
Q 000240 479 WAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKL 558 (1803)
Q Consensus 479 ~~~~~a~~~G~t~ltvs~~~~~~~~~~~~~g~~~l~asi~iaaY~pL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~ev 558 (1803)
.+.-++.++|.-.|-+--.. .+=.+.|++.+. ...+|..|+++.+.. |- +| ++.
T Consensus 149 ~lsyt~~~~G~Y~ll~~~Kd--~~S~~~fDD~~~--v~y~Vk~~~~v~I~~---------F~-~l----------ns~-- 202 (667)
T PRK14081 149 SLSYTANKPGKYELLVECKR--IDSTKDFDDFKK--VKFKVKEIDKVEITD---------FK-CL----------NKE-- 202 (667)
T ss_pred eEEEEecCCCcEEEEEEEec--CCCccccCcceE--EEEEcccCcceEEEe---------cc-cc----------Ccc--
Confidence 44568889999999877654 223455555554 447788899888873 11 11 111
Q ss_pred EEeccccEEEEE----eccccccccccceEEEEEEecCCCCcccCceeeeeeecCcceEEEEEeccccEEEEEEEEcccC
Q 000240 559 YLVPRTHVDVLL----VGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLV 634 (1803)
Q Consensus 559 ~L~~GSs~~~~~----~gGP~pw~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VtC~~lGe~~l~~~vgN~~ 634 (1803)
++.|+.+.+.. +||-. -.|+=. +++.++. +...+ .-+. ...|..+..+-|+..|.+-|+.+-
T Consensus 203 -~i~~~eI~f~~~a~~~~g~~------~LYKF~-~i~~~G~-~~~~q---dYst--~n~~~y~~~~~G~Y~i~~~VKD~~ 268 (667)
T PRK14081 203 -LICDEELVFEVESVYEEDRT------ILYKFV-KIDSDGK-QTCIQ---DYST--KNIVSYKEKKSGDYKLLCLVKDMY 268 (667)
T ss_pred -eecCcEEEEEEEEEeCCCce------EEEEEE-EECCCCC-EEEec---Cccc--cceEEEEeCCCccEEEEEEEeccC
Confidence 33465555442 12211 112211 2334441 11111 1111 236677788899999999999876
Q ss_pred CCCCCCCceEEEEEEEEeecCCeEEEEEcCCCccccccccccccccccCCCCCceeEEeEEeeCCCeEEEEEEEEcCCCC
Q 000240 635 GDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAILNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGE 714 (1803)
Q Consensus 635 ~~~np~Pa~~~~~~~v~C~~P~~L~l~~~eP~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~l~~~r~~~i~v~v~D~~gr 714 (1803)
+ .+-+-..+..+..|.--.| +.|.-..+. ... |+ -.|+.+.|.+.+-+..
T Consensus 269 S-~~eyDD~~~l~y~Vk~~~~--vkI~~~~~d----------~~s-------------~q--l~g~~I~ika~a~GG~-- 318 (667)
T PRK14081 269 S-NNEFDDRAVLVYTVKPYKD--IKIRNFTTD----------LSS-------------PQ--LTDTDIELKAVAEGGK-- 318 (667)
T ss_pred c-ccccccceEEEEEEecCCC--cEEEEEEEc----------CCC-------------Ce--ecCceEEEEEEecCCC--
Confidence 6 3355556666655522222 333200011 101 11 2567777777776533
Q ss_pred eEeecCCceEEEEecCCCcceEEecccCCccCcCcceEEEEEeecceeEEEEEEEee-e-eeccCCcccceec-cc-ccc
Q 000240 715 AFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASG-F-CDAKDGHHSAQLL-EI-SES 790 (1803)
Q Consensus 715 ~f~N~SSL~i~W~~s~~~~la~~e~~~~~~~~~s~~~~~~~l~~~~G~~~I~At~~g-y-~~~~~~~~~~~~~-~~-~~~ 790 (1803)
.|.....+.. . . .+......-+ | +.--..+.|.=.|.+-+-. | ......+....|. .+ ...
T Consensus 319 ------~llYrf~I~G-~--~-~e~~~Y~~~n---~--~~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~ 383 (667)
T PRK14081 319 ------ELLYRFIIKG-K--E-SEDSGYIRNN---I--YTWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKE 383 (667)
T ss_pred ------ceEEEEEECC-c--E-Eeeccccccc---e--EEEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCC
Confidence 2344444432 1 1 1111111000 0 1111246777777776642 2 1111211111110 00 001
Q ss_pred eeeeeEEEEEeeeeEEcCceeEEeeCCCceEEEEEcccee---EEEEEEcCcceEEEEeccCcceeeeEEEeeccceEEE
Q 000240 791 FLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSC---FLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTAL 867 (1803)
Q Consensus 791 ~l~~~iel~lv~~i~l~P~~lti~n~p~~~~~l~i~gGSG---~f~~sssn~~Vv~v~~~~~g~~~~~~~vtp~~~G~~~ 867 (1803)
| +. +..|.+.+..-.+- ......+..+.||.+ .|.+.-++..|-...+. .++++.++|...|..+
T Consensus 384 p--~~-----I~~vl~d~~~~~lv-G~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~----~~~~~~f~P~~~G~Y~ 451 (667)
T PRK14081 384 P--IK-----IEDVILDKGKHILK-GEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYG----KNNWVNFIPEEKGNYE 451 (667)
T ss_pred C--eE-----EEEEEECCCCceEe-CCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecc----cccEEEEEECCCeeEE
Confidence 1 11 12233433332222 333344566788887 34455565444343222 3578999999999998
Q ss_pred EEEEEe---cc-CCCCceeEEEEEee--eeEEE-EEecceEEEecCcEEEEEEEEeecCCCeEecCCceeeEEEEEecee
Q 000240 868 VTVYDV---GL-APPRAASALVQVAD--VDWIK-IMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDH 940 (1803)
Q Consensus 868 V~v~D~---cl-~~~~~a~a~V~V~d--i~~Ie-v~~p~~veVevG~tv~~~v~v~d~~g~~f~~s~~~~mdl~~~~~~~ 940 (1803)
|.|+-. |. .++....+.+.|.+ |..|. +..|.+...-+|..+++.+..-+ |+-+ .+...+....+
T Consensus 452 IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~--~k~v------~y~y~~~~NG~ 523 (667)
T PRK14081 452 LEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQN--TKDV------LIKYILKINGH 523 (667)
T ss_pred EEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeC--CCeE------EEEEEEEECCE
Confidence 888733 11 11234466677776 44455 23365555899999999998865 3322 22333444455
Q ss_pred EEEEeecCCCCCCCCCcccceeEEEEEeEEEEEEEEEEEEecCceEEE--EeeEEEEEeCCCc-----ccCCeeEEccCc
Q 000240 941 IVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEIL--SQPIRVEVYAPPR-----IHPHDIFLVPGA 1013 (1803)
Q Consensus 941 iv~l~~~~~~~~p~~e~~~~s~~~v~a~~~G~TtLtas~~~~~G~~i~--S~~~~I~VfpPL~-----l~P~~ltLv~Gs 1013 (1803)
.+..+.-+ ....|.+.+...|.-++-+=+++.-...-. ...+.+.|+.++- +.+.+.-..+|.
T Consensus 524 ~v~~t~Ys----------~~~~ysf~P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~ 593 (667)
T PRK14081 524 KVEETDYI----------KNKKYKFIPKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNE 593 (667)
T ss_pred EEEEeecc----------ccceEEEeecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCC
Confidence 55554322 257899999999999999999864433221 2246677776653 344455555666
Q ss_pred e--EEEEEeeCCccceEEEEe-ecCccEEEEEcccce----EEEEeeeeEEEEEEEecCCceEEEEEeEEEEE
Q 000240 1014 S--YMLTLKGGPTVGVYVDYT-STDEEIATIHRSSGQ----LFAISPGNTTLIATVFGNGDVVICQAFSSVKV 1079 (1803)
Q Consensus 1014 ~--~ql~~~GGP~p~~~v~fs-s~n~~VasV~~~~G~----Vta~~~G~t~It~~v~~~~g~~~~e~~~~V~V 1079 (1803)
. +.+.++||- +..-+|- -++.+-..|+.-+.. .+-...|.-+|.+-+-...++..-||.+.+++
T Consensus 594 ~~t~~~~~~gg~--~v~Yef~v~~~g~w~~vq~ys~k~~ysf~p~~~g~Y~ilvl~ks~~~k~~yedy~~~~~ 664 (667)
T PRK14081 594 EVTFSVKSEGGK--DVCYEFYIMEKGEWKLVQKYSRKNYYSFMPFNKGKYKVLVLCKSYYKKCAYEDYDIFEF 664 (667)
T ss_pred eEEEEEEccCCC--cEEEEEEEEECCcEEEEeeccccCceEEEeccCCcEEEEEEEeccccccccccceEEEE
Confidence 5 555556884 4455544 467777777531222 77889999999999988777777788777765
No 21
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=34.30 E-value=1.8e+03 Score=32.73 Aligned_cols=99 Identities=21% Similarity=0.252 Sum_probs=55.6
Q ss_pred eeEEEEEeecccCCCCccccccceeccCCeEEeeCcce-------eEEEEEEeccC-c-ceeEEEEEEEccee-------
Q 000240 1250 KGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNH-------LACIQAKDRSS-G-RIEIASCVRVAEVA------- 1313 (1803)
Q Consensus 1250 s~~i~Y~il~~~~~~~~v~~~d~~~I~~g~i~t~~~~G-------~a~i~v~d~~~-g-~qt~~~~V~Vs~V~------- 1313 (1803)
.+.+.|++... + .-.+. . +.|-|.+..... ..-|+.+|+.. . ....++.|.|.|+-
T Consensus 510 na~l~y~laG~--~-pf~I~-~----~SG~Itvtk~ldrEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft 581 (2531)
T KOG4289|consen 510 NARLHYSLAGV--G-PFQIN-N----GSGWITVTKELDRETVEHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFT 581 (2531)
T ss_pred ccceeeeeccC--C-CeeEe-c----CCceEEEeecccccccceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccc
Confidence 36688887762 1 11111 1 466664432222 23346666655 2 66667888888875
Q ss_pred ----EEEEEecCCcceeeeecCcEEEEEEEEeccCCCccccccceEEEEEE----EceeeeEEEE
Q 000240 1314 ----QIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAE----TNYHDVVSIN 1370 (1803)
Q Consensus 1314 ----~l~i~~~~~~~~~~lpvG~s~~~~V~~~D~~G~~F~~~~~~i~l~~~----~n~~dlv~i~ 1370 (1803)
.|+|+ + ..|+|.++- +|.+.|.. |+. .+.+++. -||+.+.+|+
T Consensus 582 ~~eytl~in--E-----D~pvgsSI~-tvtAvD~d---~~s---~ityqi~g~ntrn~Fsi~si~ 632 (2531)
T KOG4289|consen 582 QKEYTLRIN--E-----DAPVGSSIV-TVTAVDRD---ANS---VITYQITGGNTRNRFSISSIG 632 (2531)
T ss_pred cCceEEEec--C-----CccccceEE-EEEEeccc---ccc---ceEEEecCCcccccceeeccC
Confidence 45554 2 478988874 88888865 332 2445553 3445555555
No 22
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=33.64 E-value=1.9e+02 Score=28.53 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=39.9
Q ss_pred ceeEEEEEEeccCCCCCcceEEeecCceeEEEecCcE--EEecCCceEEEEEEeecCC
Q 000240 328 IYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGV--VQAKKPGKATVKVVSIFDS 383 (1803)
Q Consensus 328 ~~q~~~L~a~GGsg~~~~~y~WsSsn~~VasV~~~Gv--vta~~~G~t~I~a~d~~n~ 383 (1803)
..+.+.|+|.||.+ .+.|.-...-+.+.....- ......|.-+|+|.|..+.
T Consensus 30 ~~~~l~l~a~~~~~----~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vvD~~G~ 83 (89)
T PF06832_consen 30 ERQPLVLKAAGGRG----PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVVDAQGR 83 (89)
T ss_pred ccceEEEEEeCCCC----cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEEcCCCC
Confidence 35689999999998 9999999988865554443 3333689999999886544
No 23
>PF09134 Invasin_D3: Invasin, domain 3; InterPro: IPR015217 This domain adopts a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria []. ; PDB: 1CWV_A.
Probab=30.57 E-value=1.8e+02 Score=29.90 Aligned_cols=77 Identities=10% Similarity=0.185 Sum_probs=37.2
Q ss_pred cEEEEEEEEeecCCCeEecC-CceeeEEEEEeceeEEEEeecCCCCCCCCCcccceeEEEEEeEEEEEEEEEEEEecCce
Q 000240 907 RSQSIDLMAGIDDGSTFDSF-QYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGH 985 (1803)
Q Consensus 907 ~tv~~~v~v~d~~g~~f~~s-~~~~mdl~~~~~~~iv~l~~~~~~~~p~~e~~~~s~~~v~a~~~G~TtLtas~~~~~G~ 985 (1803)
.+-.+.+++.|.+|+++.-- +.++. .+..-++|-+..+ ++| . =...++|...|..+|+-++ .|+
T Consensus 21 dta~LTfta~D~~g~pvsGl~~l~f~-----~~g~~vtls~itE--~~G-v----YtATl~Gt~~G~vtI~P~v---~G~ 85 (99)
T PF09134_consen 21 DTATLTFTARDANGNPVSGLSVLAFV-----QDGVPVTLSPITE--NPG-V----YTATLKGTSAGEVTITPQV---NGQ 85 (99)
T ss_dssp --EEEEEE-B-TTS-B--S--SEEEE-----EEES--EE---EE---SS------EEEEEE-SS-EEEEEEEEE---TTE
T ss_pred ceEEEEEEEEcCCCCcccCceeEEEE-----ccCCCcEEccccc--cCC-E----EEEEEEcccCceEEEEEee---CCE
Confidence 46678888999999999632 22221 1222344433221 222 2 2346999999999999999 677
Q ss_pred EEEEeeEEEEEeC
Q 000240 986 EILSQPIRVEVYA 998 (1803)
Q Consensus 986 ~i~S~~~~I~Vfp 998 (1803)
.+..-+.++..||
T Consensus 86 ~l~~~~~k~tl~~ 98 (99)
T PF09134_consen 86 PLATLQKKLTLIP 98 (99)
T ss_dssp E-GGG-EEEEEE-
T ss_pred EccccceeEEEee
Confidence 6666666666665
No 24
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=28.17 E-value=4e+02 Score=27.11 Aligned_cols=69 Identities=7% Similarity=0.085 Sum_probs=39.4
Q ss_pred EecCcEEEEEEEEeecCCCeEecCCceeeEEEE--EeceeEEEEeecCCCCCCCCCcccceeEEEEEeEEEEEEEEEEEE
Q 000240 903 LMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRV--HIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSAR 980 (1803)
Q Consensus 903 VevG~tv~~~v~v~d~~g~~f~~s~~~~mdl~~--~~~~~iv~l~~~~~~~~p~~e~~~~s~~~v~a~~~G~TtLtas~~ 980 (1803)
..-+....+.+++.|.+|+++. -..+.| ......+........- ...+-..+.+++...|..+++|++.
T Consensus 19 a~g~~~~tltatV~D~~gnpv~-----g~~V~f~~~~~~~~l~~~~~~~~T----d~~G~a~~tltst~aG~~~VtA~~~ 89 (100)
T PF02369_consen 19 ADGSDTNTLTATVTDANGNPVP-----GQPVTFSSSSSGGTLSPTNTSATT----DSNGIATVTLTSTKAGTYTVTATVD 89 (100)
T ss_dssp SSSSS-EEEEEEEEETTSEB-T-----S-EEEE--EESSSEES-CEE-EEE-----TTSEEEEEEE-SS-EEEEEEEEET
T ss_pred eCCcCcEEEEEEEEcCCCCCCC-----CCEEEEEEcCCCcEEecCccccEE----CCCEEEEEEEEecCceEEEEEEEEC
Confidence 4567889999999999999995 234555 2222222211000000 0123578899999999999999994
No 25
>PRK10177 putative invasin; Provisional
Probab=27.64 E-value=1.4e+02 Score=38.24 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=31.6
Q ss_pred EEEEEEEEEEEecCceEEEEeeEEEEEeCCCcccCCe
Q 000240 970 LGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHD 1006 (1803)
Q Consensus 970 ~G~TtLtas~~~~~G~~i~S~~~~I~VfpPL~l~P~~ 1006 (1803)
.=.-+|.|++.|..|++..|..++|.|-+|+.+.|..
T Consensus 423 ~N~Y~ls~~a~D~kGn~~~Sn~i~v~Vt~p~~~~~~~ 459 (465)
T PRK10177 423 SNRWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSND 459 (465)
T ss_pred CceEEEEEEEEECCCCccccceEEEEEeCCccccCCC
Confidence 3456788889999999999999999999999877643
No 26
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=26.76 E-value=4.7e+02 Score=25.86 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=44.8
Q ss_pred ceeeeecCcEEEEEEEEeccCCCccccccceEEEEEEEceee------eEEEE--eeecCCceEEEEEeeeeeEEEEEEe
Q 000240 1324 NVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHD------VVSIN--YTLNGSGKIYLKAKQHGRALVQVSM 1395 (1803)
Q Consensus 1324 ~~~~lpvG~s~~~~V~~~D~~G~~F~~~~~~i~l~~~~n~~d------lv~i~--~~~~~n~t~~v~av~~G~t~L~v~d 1395 (1803)
-+....+|...+|.|..+|..|.+...... .+.+.+..++ -+.+. ...++.+.+.......|.=.|.|+-
T Consensus 13 gl~~~~~g~~~~F~V~~~d~~g~~~~~~~~--~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~ 90 (101)
T PF00630_consen 13 GLEPAVVGEPATFTVDTRDAGGNPVSSGGD--EFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKI 90 (101)
T ss_dssp GGTEEETTSEEEEEEEETTTTSSBEESTSS--EEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEE
T ss_pred ccCCeECCCcEEEEEEEccCCCCccccCCc--eeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEE
Confidence 344568999999999999999999985433 2444443321 22333 2222333444667788888888874
No 27
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=26.66 E-value=1e+02 Score=34.71 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=7.7
Q ss_pred ccccCCCCCCCCcccc
Q 000240 1762 TVSNEQSPRTPQPFVD 1777 (1803)
Q Consensus 1762 ~~~~~~s~~~~~~~~~ 1777 (1803)
..|...+|++++|..-
T Consensus 145 ~~y~~~pp~~~~~~~~ 160 (179)
T PF13908_consen 145 QGYQPPPPQPGQPYPP 160 (179)
T ss_pred CCCCcCCCCCCCCCCC
Confidence 3455555555544433
No 28
>PF07347 CI-B14_5a: NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a); InterPro: IPR009947 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains the eukaryotic NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a). This is approximately 100 residues long, and forms part of a multiprotein complex that resides on the inner mitochondrial membrane [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport, 0005743 mitochondrial inner membrane
Probab=25.29 E-value=45 Score=33.94 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=10.6
Q ss_pred ccchhcccccCC
Q 000240 1788 NYRREARRRFNV 1799 (1803)
Q Consensus 1788 ~~~~~~~~~~~~ 1799 (1803)
||.|+|||-..|
T Consensus 49 Yy~RD~RRev~P 60 (97)
T PF07347_consen 49 YYTRDARREVQP 60 (97)
T ss_pred ccccccccccCC
Confidence 999999998766
No 29
>PRK15315 outer membrane protein RatA; Provisional
Probab=24.01 E-value=4e+02 Score=38.97 Aligned_cols=115 Identities=18% Similarity=0.177 Sum_probs=71.3
Q ss_pred CcceeeeecCcEEEEEEEEeccCCCccccccceEEEEEEEceeee------EEEEeee---cCCceEEEEEeeeeeEEEE
Q 000240 1322 PLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDV------VSINYTL---NGSGKIYLKAKQHGRALVQ 1392 (1803)
Q Consensus 1322 ~~~~~~lpvG~s~~~~V~~~D~~G~~F~~~~~~i~l~~~~n~~dl------v~i~~~~---~~n~t~~v~av~~G~t~L~ 1392 (1803)
.+...++.+|.+++++|...|..|++-......+...-+.||-.. |+|+-.+ .++ .|.=..=+.|+++|.
T Consensus 215 t~~A~KvkvGesItLTVttk~~~g~~v~nv~f~i~~~da~NRQ~~vnn~~pV~vg~telt~~~~-~Y~G~TDanG~aTv~ 293 (1865)
T PRK15315 215 SFEASKVKVGESITLTVTTKACDGEPAINAPFVIRREDAINRQGVVNNANPVRVGNTELTTAQT-EYHGVTDGQGNATVV 293 (1865)
T ss_pred hhhhhccccCCcEEEEEEeeccCCcccCceeEEEEeccchhccCCcCCCCceEECCeecccccc-eEeeeeCCCCeEEEE
Confidence 346678999999999999999999977643332322226777543 4453111 012 466666788999999
Q ss_pred EEeccCCCceeEEEEeeeeEEecCCCeEEeccEEEEEEeecC-CCceeeEE
Q 000240 1393 VSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFS-DQVSGHWF 1442 (1803)
Q Consensus 1393 v~d~~~~~isdyi~v~V~~~I~P~~~~L~vGd~~~fs~~~~~-~~~~g~Ws 1442 (1803)
|.+.+++|+-+-+.+... ...++.-..=+-|++-.-| .++...|-
T Consensus 294 vTqpnG~GVKT~L~v~~~-----s~~t~t~~~dVIFTViTSPDs~~AnMWG 339 (1865)
T PRK15315 294 VTQENGPGVKTRLIVSSQ-----NYPTLTDNVDVIFTTITSPDSDKASMYG 339 (1865)
T ss_pred EeCCCCCceeeeEEEEec-----cCccccccccEEEEecCCCCchhhhhhh
Confidence 999999998665554442 1123333344456654434 34444553
No 30
>PF07703 A2M_N_2: Alpha-2-macroglobulin family N-terminal region; InterPro: IPR011625 This is a domain of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; PDB: 2QKI_D 3L3O_D 3NMS_A 2ICF_A 2A73_A 2ICE_D 2HR0_A 2A74_A 2XWJ_G 3OHX_A ....
Probab=21.38 E-value=5.3e+02 Score=27.05 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=66.1
Q ss_pred EEecCcEEEEEEEEeecCCCeEecCCceeeEEEEEeceeEEEEeecCCCCCCCCCcccceeEEEEEeEEEEEEEEEEEEe
Q 000240 902 SLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQ 981 (1803)
Q Consensus 902 eVevG~tv~~~v~v~d~~g~~f~~s~~~~mdl~~~~~~~iv~l~~~~~~~~p~~e~~~~s~~~v~a~~~G~TtLtas~~~ 981 (1803)
..++|+++++.+..-...|. +-+.+...++++...... .+.+ ...-.+.++..-.+...|.+.+-.
T Consensus 9 ~~~~Ge~~~v~v~~~~~~~~---------~~~~v~s~g~I~~~~~~~--~~~~---~~~~~~~v~~~~~P~~~v~~~~v~ 74 (136)
T PF07703_consen 9 SYKPGETAKVTVQSPFPNGT---------FLYLVESRGKIVSTGSVE--LKNG---STTFEFPVTPDMAPNFYVLAYYVR 74 (136)
T ss_dssp SB-TTSEEEEEEEEESCESE---------EEEEEEETTEEEEEEEEE--CTTT---SSEEEEEE-GGGTSEEEEEEEEET
T ss_pred CcCCCCEEEEEEEcCCCccE---------EEEEEEECCeEEEEEEEE--ecCC---cEEEEEecchhcCCcEEEEEEEEc
Confidence 38999999999876544222 223333344444443211 0000 124567777777788888888864
Q ss_pred cCceEEEEeeEEEEEeCCC----cccCCeeEEccCceEEEEEeeCCccceEEEEe
Q 000240 982 QSGHEILSQPIRVEVYAPP----RIHPHDIFLVPGASYMLTLKGGPTVGVYVDYT 1032 (1803)
Q Consensus 982 ~~G~~i~S~~~~I~VfpPL----~l~P~~ltLv~Gs~~ql~~~GGP~p~~~v~fs 1032 (1803)
..+.++.+....|.|=+.. .+.+..-..-||+..++.++++| ++.+...
T Consensus 75 ~~~g~~~~~s~~i~V~~~~~~~v~l~~~~~~~~Pg~~~~~~i~~~~--~s~v~l~ 127 (136)
T PF07703_consen 75 PADGEVVADSVWIEVEPCFELKVELTASPDEYKPGEEVTLRIKAPP--NSLVGLS 127 (136)
T ss_dssp TCTCEEEEEEEEEEBGCSGSSSEEEEESSSSBTTTSEEEEEEEEST--TEEEEEE
T ss_pred CCCCeEEEEEEEEEecccccceEEEEEecceeCCCCEEEEEEEeCC--CCEEEEE
Confidence 3133456677777776632 23343344569999999999964 5555443
No 31
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=20.73 E-value=1.4e+02 Score=29.46 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=15.2
Q ss_pred chhhhhhhhhhhHHHHHHHHh
Q 000240 1707 RIFASFIGFFAVFSLIVVFSI 1727 (1803)
Q Consensus 1707 ~~~~~~~~~~~~~~~~~~~~~ 1727 (1803)
...|+|..+.|+||+|-+|..
T Consensus 26 ~lMtILivLVIIiLlImlfqs 46 (85)
T PF10717_consen 26 TLMTILIVLVIIILLIMLFQS 46 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 367777777777777777766
No 32
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=20.33 E-value=4e+02 Score=27.10 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=43.6
Q ss_pred eecCcEEEEEEEEeccCCCccccccceEEEEE--EEceeeeEEE----EeeecCCceEEEEEeeeeeEEEEEEeccCC
Q 000240 1328 LAVGAECEIPISYYDALGTPFHEAHNVILYHA--ETNYHDVVSI----NYTLNGSGKIYLKAKQHGRALVQVSMNRSP 1399 (1803)
Q Consensus 1328 lpvG~s~~~~V~~~D~~G~~F~~~~~~i~l~~--~~n~~dlv~i----~~~~~~n~t~~v~av~~G~t~L~v~d~~~~ 1399 (1803)
.--+...++++.+.|..|+|... +.++| ..+...|..- ....++..++.+..-..|..++++...+..
T Consensus 19 a~g~~~~tltatV~D~~gnpv~g----~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~~ 92 (100)
T PF02369_consen 19 ADGSDTNTLTATVTDANGNPVPG----QPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGGS 92 (100)
T ss_dssp SSSSS-EEEEEEEEETTSEB-TS-----EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTEE
T ss_pred eCCcCcEEEEEEEEcCCCCCCCC----CEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCcc
Confidence 34568899999999999999984 35677 5555555432 223335557778889999999999866544
No 33
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=20.27 E-value=1.8e+03 Score=28.05 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=78.9
Q ss_pred ccceeEEEEEEcCcceEEEEeccCcceeeeEEEeeccceEEEEEEEEeccCCCCceeEEEEEeeeeEEEEEe-cceEEEe
Q 000240 826 AGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMS-GEEISLM 904 (1803)
Q Consensus 826 ~gGSG~f~~sssn~~Vv~v~~~~~g~~~~~~~vtp~~~G~~~V~v~D~cl~~~~~a~a~V~V~di~~Iev~~-p~~veVe 904 (1803)
=+||-+|.|.....+|- -+.+... .-++|.--.+|.=.+...- .....|.|..--+|+++. |.. +=
T Consensus 37 PDGsk~ya~~~~p~~V~-W~~~~~~---DlItI~~PmpGpWq~~G~v-------~p~sri~viS~L~L~v~plP~~--l~ 103 (374)
T TIGR03503 37 PDGSKYYAWRVHPEDVK-WYDESTM---DIISIKNPMPGPWQAIGKI-------TPGNRVKVISNLRLEVEPLPSP--LF 103 (374)
T ss_pred CCCcEEeccCCCCCCce-EEecCCc---eEEEeCCCCCCCcEEeeee-------CCCCeEEEEeccEEEEecCCcc--cc
Confidence 36666666663333432 1112211 2244444445655444331 112345555555566654 665 88
Q ss_pred cCcEEEEEEEEeecCCCeEecCCc-eeeEEEEEece-------------eEEEEeecCCC---CCCCCCcccceeEEEEE
Q 000240 905 EGRSQSIDLMAGIDDGSTFDSFQY-TYMDIRVHIED-------------HIVELIDDDAT---SSPDGGYFSMSSFKIMA 967 (1803)
Q Consensus 905 vG~tv~~~v~v~d~~g~~f~~s~~-~~mdl~~~~~~-------------~iv~l~~~~~~---~~p~~e~~~~s~~~v~a 967 (1803)
.|..+++.+++++ +|+++...+| ..|++++..-+ .++.-...+++ ..|+... ....+ -.-
T Consensus 104 ~gE~lk~ta~L~~-d~~~i~~~~~l~~v~~~v~f~~~~~~~~e~~~~~~~vvg~f~DdG~g~DE~p~DGv-FT~~l-~l~ 180 (374)
T TIGR03503 104 QGETLKVTAKLLN-DGEPLKLPDFRDVVKLTVRFVSTNNAEDENFGADPIVVGEFEDDGEGLDERPGDGI-FTGEF-NLD 180 (374)
T ss_pred CCCeEEEEEEEec-CCEEeechhhhheEEEEEEEEecCCccccccccCCEEEEeeccCCccCCCCCCCce-EEEEe-ecc
Confidence 9999999999875 4577776654 46677764321 11111111111 1222211 11111 223
Q ss_pred eEEEEEEEEEEEEecCceEEEEeeEEEEEeC-CCc
Q 000240 968 KHLGITTLYVSARQQSGHEILSQPIRVEVYA-PPR 1001 (1803)
Q Consensus 968 ~~~G~TtLtas~~~~~G~~i~S~~~~I~Vfp-PL~ 1001 (1803)
...|.-.++++++.+.-.+ ...+.|.||| |+.
T Consensus 181 ~~~G~Y~~~v~~~n~vF~R--~~~q~v~V~p~Pi~ 213 (374)
T TIGR03503 181 VAPGEYRPTYQSRNPVFLR--EVEQPVLVYPLPVS 213 (374)
T ss_pred CCCceEEEEEEEcCceEEE--EEEEeEEEECCCee
Confidence 4579999999986322222 2245788884 544
Done!