Query 000240
Match_columns 1803
No_of_seqs 215 out of 250
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 17:21:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000240.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_18-22//hhsearch_pdb/000240hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ncx_A Intimin, intimin adhere 1.0 1 1 95.8 5.1 89 298-399 3-97 (189)
2 1cwv_A Invasin; integrin-bindi 1.0 1 1 62.1 28.2 332 697-1068 22-384 (492)
3 1f00_I Intimin; immunoglobulin 1.0 1 1 59.8 11.1 160 213-399 22-185 (282)
4 2l04_A Major tail protein V; b 1.0 1 1 51.3 6.6 57 1003-1060 12-73 (91)
5 3ncx_A Intimin, intimin adhere 1.0 1 1 50.2 4.2 68 993-1065 4-84 (189)
6 2l04_A Major tail protein V; b 1.0 1 1 49.8 4.9 47 346-393 39-88 (91)
7 1f00_I Intimin; immunoglobulin 1.0 1 1 43.0 11.0 154 891-1064 4-171 (282)
8 1f1s_A Hyaluronate lyase; the 1.0 1 1 41.3 6.9 54 343-398 26-79 (814)
9 1cwv_A Invasin; integrin-bindi 1.0 1 1 39.5 23.5 235 211-498 27-286 (492)
10 1f1s_A Hyaluronate lyase; the 1.0 1 1 26.3 6.3 37 122-160 27-63 (814)
No 1
>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion; 2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A
Probab=1.00 E-value=1 Score=95.81 Aligned_cols=89 Identities=27% Similarity=0.422 Sum_probs=73.9
Q ss_pred EEEEEEEEEEEEECCCCCCCCEE------EECCCCCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEECCCEEEECCCC
Q ss_conf 99999967798203678887369------902756721579999923688998606996069514999007079944775
Q 000240 298 QEIMVCDRIKFSLDQTNGVSESI------LLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPG 371 (1803)
Q Consensus 298 qev~I~~~i~i~~~~~~~~p~~i------~lP~~~~~~q~~~L~a~GGsg~~~~~y~WsSsn~~VasV~~~Gvvt~~~~G 371 (1803)
.||++|.+++|| . ..+++ .||-.+..|.+|+|+|+||.+ +|+|+|+||.||+||..|+|++...|
T Consensus 3 ~~v~ff~~l~id--~---~v~iig~~v~g~lP~~wlqygqFkL~a~Ggn~----~ytW~Ssdp~IAsVDssG~VT~~~kG 73 (189)
T 3ncx_A 3 TEVTFFDELKID--N---KVDIIGNNVRGELPNIWLQYGQFKLKASGGDG----TYSWYSENTSIATVDASGKVTLNGKG 73 (189)
T ss_dssp CCCCCCCCCEEC--S---SEEETTTTEEESCCSSEETTCEEECCEESTTS----CEEEEESCTTTEEECTTSEEEECSSS
T ss_pred CCEEEEEEEEEC--C---CEEEEECCCCCCCCCHHHHCEEEEEEECCCCC----CEEEEECCCCEEEECCCCCEEEECCC
T ss_conf 616876467607--8---44899624477788301102699998469986----26888489986788589838981368
Q ss_pred EEEEEEEEECCCCCEEEEEEEEECCCCE
Q ss_conf 4999999303874034799999466315
Q 000240 372 KATVKVVSIFDSFNYDEIVIEVSTPSSM 399 (1803)
Q Consensus 372 ~t~I~a~d~~n~~n~~~~~V~V~~p~~i 399 (1803)
+++|+|.+..++ ++.+.|..|..|
T Consensus 74 tatITats~dg~----tatytvt~p~~~ 97 (189)
T 3ncx_A 74 SVVIKATSGDKQ----TVSYTIKAPSYM 97 (189)
T ss_dssp CEEEEEEETTSC----EEEEEECCCSCE
T ss_pred CEEEEEECCCCC----EEEEEEECCCEE
T ss_conf 479999918997----689999746028
No 2
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=1.00 E-value=1 Score=62.14 Aligned_cols=332 Identities=14% Similarity=0.119 Sum_probs=177.8
Q ss_pred ECC-CEEEEEEEEECCCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEEEECCEEEEEEEEEEEEEEC
Q ss_conf 079-8699999999489983750488469999618885269724667766767633798975121069999999566413
Q 000240 697 ANG-QTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDA 775 (1803)
Q Consensus 697 ~~~-r~~~i~v~v~D~~gr~f~N~SSL~i~W~~s~~~~la~~e~~~~~~~~~s~~~~~~~l~~~~G~~~I~At~~gy~~~ 775 (1803)
.+| ....+.+.+.|++|+.+ .+..+.|...+...+.... ..-|.+|.-..-.-..+.|..+|+|++.|-...
T Consensus 22 AdG~~~~~ltatV~D~~Gnpv---~g~~Vtf~~~~g~~~~~~t----~~Td~~G~a~~tltst~aG~~~VtAt~~g~s~s 94 (492)
T 1cwv_A 22 ANGKTAITVEFTVADFEGKPL---AGQEVVITTNNGALPNKIT----EKTDANGVARIALTNTTDGVTVVTAEVEGQRQS 94 (492)
T ss_dssp SSSSSCEEEEEEEECTTSCBC---CSCEEEEECCTTCBSCEEE----EECCTTSEEEEEEBCSSCEEEEEEEEETTEEEE
T ss_pred ECCCCEEEEEEEEECCCCCCC---CCCEEEEEECCCCCCCCCC----EEECCCCEEEEEEECCCCEEEEEEEEECCCCCE
T ss_conf 078760899999994899987---9988999978984014420----445899659999976765279999997984102
Q ss_pred CCCCCCCEECCCCCCEEEEEEEEEEEEEEEECCCEEEEEECCCCEEEEEECCCEE------EEEEEECCCCEEEEEECCC
Q ss_conf 6885321000122330211599999531498273449942887249999903212------9999996865299994168
Q 000240 776 KDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSC------FLEAAVNDSQVVEVIQAPE 849 (1803)
Q Consensus 776 ~~~~~~~~~~~~~~~~is~~iel~iv~~i~v~P~~vti~n~p~~~~~l~i~gGSG------~f~~sss~~~Vv~v~~~~~ 849 (1803)
..+ .|.... .... ...+.+.|+...--.......++.+....| ...|+..+..+..++.+..
T Consensus 95 ---~~v-~f~a~~---~~a~-----~s~l~~~~~~~~A~g~~~~tltatv~Da~GNpv~g~~Vtf~~~~g~~~~~Ttd~~ 162 (492)
T 1cwv_A 95 ---VDT-HFVKGT---IAAD-----KSTLAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHND 162 (492)
T ss_dssp ---EEE-EEECCC---BCGG-----GCEEEEESSEEETTSSCCEEEEEECBBTTSCBCCSCCEEEEESSSEECCCEECSS
T ss_pred ---EEE-EEEECC---CCCC-----CEEEEEECCCEECCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCC
T ss_conf ---678-986314---7643-----2059983341241773048999999948999958858999977984234686689
Q ss_pred CCEEEEEEEEECCCEEEEEEEEEECCCCCCCEEEEEEEE-EE------EEEEEEECCEEEEECCCEEEEEEEEEECCCCE
Q ss_conf 613445999543221999999990059997526999996-64------37999965448996184999999996159996
Q 000240 850 GLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVA-DV------DWIKIMSGEEISLMEGRSQSIDLMAGIDDGST 922 (1803)
Q Consensus 850 g~~~~~i~v~p~~~G~~~I~v~D~cL~~~~~a~a~V~V~-di------~~I~i~~p~~veVevG~tv~i~v~v~d~~G~~ 922 (1803)
|. -.+.++....|..+|++.--.... ......|.+. +. ..|.+. ++.+...-+....+.+++.|.+|.+
T Consensus 163 G~--at~tlts~~aG~~tVtA~v~g~~~-~~~s~~vtf~a~~~~~~~~~~l~v~-~~~~~A~g~~~~tltatv~D~~GNp 238 (492)
T 1cwv_A 163 GT--YSAPLTSTTLGVATVTVKVDGAAF-SVPSVTVNFTADPIPDAGRSSFTVS-TPDILADGTMSSTLSFVPVDKNGHF 238 (492)
T ss_dssp SE--EEEEEECSSCEEEEEEEEETTEEE-EEEEEEEEEECCSSCCTTTCEEEES-CSEEETTSCCCEEEEEECBCTTSCB
T ss_pred CE--EEEEEECCCCEEEEEEEEECCCCC-CCCCEEEEEECCCCCCCCEEEEEEC-CCCEEECCCCEEEEEEEEECCCCCC
T ss_conf 48--999998467638999999888521-2342579998167654301357626-6616607864089999999899899
Q ss_pred EECCCCEEEEEEEEECEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCCC-
Q ss_conf 8547722458899940007999616899999998432105999993777899999998037508987328999958994-
Q 000240 923 FDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPR- 1001 (1803)
Q Consensus 923 f~~s~~~~mdl~~~~~~~iv~l~~~~~~~~p~~e~~~~~~~~i~g~~~G~TtLtas~~~~~G~~i~S~~~~I~VfpPLr- 1001 (1803)
+.-.. ++.+......+.+.+.. +..+.....+++...|..+++|++. |.........|+.|+...
T Consensus 239 v~g~~----~V~f~~~G~~v~~s~~T-------~~~G~~t~t~t~~~aG~~tVtA~~~---g~~~~~~~~~i~f~~~~~~ 304 (492)
T 1cwv_A 239 ISGMQ----GLSFTQNGVPVSISPIT-------EQPDSYTATVVGNSVGDVTITPQVD---TLILSTLQKKISLFPVPTL 304 (492)
T ss_dssp CCSCC----SEEEEEEESCCEECCCE-------ECSSCEEEEEECSSCEEEEEEEEET---TEECGGGCEEEEEECCCCE
T ss_pred CCCCC----EEEEECCCCEEEEEEEE-------CCCCEEEEEEECCCCEEEEEEEEEC---CCCCCCCCCEEEEEEECCC
T ss_conf 46774----49995389425321373-------3785499999758613799999978---8334566420799963132
Q ss_pred ----C----------CCCEEEECCCCEEEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEEE--EEEEEEEECC
Q ss_conf ----1----------57726990396599999617723607999642750899992454699994564--7999999637
Q 000240 1002 ----I----------HPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGN--TTLIATVFGN 1065 (1803)
Q Consensus 1002 ----l----------~P~~itLv~Gs~~qi~~~GGP~p~~~v~fs~~n~~VatV~~~~G~Vta~~~G~--t~It~~v~~~ 1065 (1803)
+ .|. +..-|+.+|+..-|+|..+..+.|++++...+++|. +|.++=...|. .+|+++..+.
T Consensus 305 ~~i~vng~~~~~~~gfP~--tgf~~A~f~~~~~~~~~~n~~y~wsss~~~~~tvd~-~G~vt~~~~~~~~vtITat~~~~ 381 (492)
T 1cwv_A 305 TGILVNGQNFATDKGFPK--TIFKNATFQLQMDNDVANNTQYEWSSSFTPNVSVND-QGQVTITYQTYSEVAVTAKSKKF 381 (492)
T ss_dssp EEEEETTEEECTTSCCCS--EEETTCEEEEEETTCGGGGGGEEEEESSTTTEEECT-TCEEEECSCCSSCEEEEEEESSS
T ss_pred CEEEECCCCCCCCCCCCC--EEEEEEEEEEECCCCCCCCCCEEECCCCCCEEEECC-CCEEEEEECCCCEEEEEEEECCC
T ss_conf 127853621335678874--158769999912896366772311246862588788-83599995489779999996889
Q ss_pred CCE
Q ss_conf 843
Q 000240 1066 GDV 1068 (1803)
Q Consensus 1066 ~g~ 1068 (1803)
.+.
T Consensus 382 ~~~ 384 (492)
T 1cwv_A 382 PSY 384 (492)
T ss_dssp TTC
T ss_pred CCC
T ss_conf 982
No 3
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=1.00 E-value=1 Score=59.81 Aligned_cols=160 Identities=22% Similarity=0.340 Sum_probs=94.7
Q ss_pred EEEEEEECCCCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECEE-EEEEEEEEEEEEEEEEEEECCCCCE
Q ss_conf 999999628999534993026838992077532699421366510256654379-9985223499999999984167743
Q 000240 213 LIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRI-LKATSQGLGKLTASLTYFSGLHDTK 291 (1803)
Q Consensus 213 ~i~v~lfd~~~~~~~iyit~~~~i~~~~~~~~~~~i~~~~~~~ng~y~~~n~~~-v~a~~~G~~~I~Asl~~~~~~~~~~ 291 (1803)
.+++.+.| + | |++ - +..+.+..+.-. +......++.+|.. .+ ++..++|..+|+|++.... +
T Consensus 22 t~tatV~D-~-g-npv-~--g~~V~fs~~~G~-l~~~~~~Td~~G~a-----tvtltst~aG~~~VtA~v~~~~-~---- 84 (282)
T 1f00_I 22 TYTVKVMK-G-D-KPV-S--NQEVTFTTTLGK-LSNSTEKTDTNGYA-----KVTLTSTTPGKSLVSARVSDVA-V---- 84 (282)
T ss_dssp EEEEEEEE-T-T-EEC-T--TCEEEEEESSSE-ESCSEEECCTTSEE-----EEEEECSSCEEECEEEEETTCC-C----
T ss_pred EEEEEEEE-C-C-CCC-C--CCEEEEECCCCC-CCCCEEEECCCCEE-----EEEEECCCCEEEEEEEEECCCC-C----
T ss_conf 99999997-9-9-216-7--867999858973-13652577899579-----9999827754799999977876-4----
Q ss_pred EEEEEEEEEEEEEEEEEEECC-C-CCCCCEEEECCCCCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEE-CCCEEEEC
Q ss_conf 568888999999677982036-7-88873699027567215799999236889986069960695149990-07079944
Q 000240 292 EVLKVVQEIMVCDRIKFSLDQ-T-NGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSIT-ASGVVQAK 368 (1803)
Q Consensus 292 ~~i~~~qev~I~~~i~i~~~~-~-~~~p~~i~lP~~~~~~q~~~L~a~GGsg~~~~~y~WsSsn~~VasV~-~~Gvvt~~ 368 (1803)
. ++ .++|+++.++.++-.. . .+...-=.||-.....-+|+|.+.||.+ +|.|+|+++.+++|+ ..|.++.+
T Consensus 85 ~-~~-a~~VtFva~~~i~~~~v~vng~~adg~~p~t~~~~a~~~l~~~~~n~----~ytWsSs~~~~~sVd~~~G~Vt~~ 158 (282)
T 1f00_I 85 D-VK-APEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNG----KYTWRSANPAIASVDASSGQVTLK 158 (282)
T ss_dssp C-EE-CCCEEEECCCEECTTCEEETTTCCEESCCSEEETTCEEECCEESTTS----CEEEEESCTTTEEECTTTCEEEEC
T ss_pred C-CC-CCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCC----EEEEECCCCCEEEECCCCCEEEEC
T ss_conf 2-34-45512550121123215630652576687633111599999469961----577742687269970787669977
Q ss_pred CCCEEEEEEEEECCCCCEEEEEEEEECCCCE
Q ss_conf 7754999999303874034799999466315
Q 000240 369 KPGKATVKVVSIFDSFNYDEIVIEVSTPSSM 399 (1803)
Q Consensus 369 ~~G~t~I~a~d~~n~~n~~~~~V~V~~p~~i 399 (1803)
..|+.+|.|.+..+. .+...+..|.-+
T Consensus 159 ~~GtvtITatsg~~~----t~t~ti~~~~wf 185 (282)
T 1f00_I 159 EKGTTTISVISSDNQ----TATYTIATPNSL 185 (282)
T ss_dssp SSSCEEEEEEETTTE----EEEEEECCCSEE
T ss_pred CCCEEEEEEECCCCE----EEEEEEECCEEE
T ss_conf 885599999969980----799998177289
No 4
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=1.00 E-value=1 Score=51.32 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=18.9
Q ss_pred CCCEEEECCCCEEEEEEEECCCC--CEEEEEEECCCCEEEEECCCC---EEEEEEEEEEEEEE
Q ss_conf 57726990396599999617723--607999642750899992454---69999456479999
Q 000240 1003 HPHDIFLVPGASYMLTLKGGPTV--GVYVDYTSTDEEIATIHRSSG---QLFAISPGNTTLIA 1060 (1803)
Q Consensus 1003 ~P~~itLv~Gs~~qi~~~GGP~p--~~~v~fs~~n~~VatV~~~~G---~Vta~~~G~t~It~ 1060 (1803)
+|..+.|..|.+.+|...=-|.. +..+.|+++|++||+|+. +| .|+|++.|.++|++
T Consensus 12 ~~~~~~l~vG~t~~L~atv~P~~Atnk~vtwsSsd~~vATVd~-~G~~~~Vt~v~~GtatITa 73 (91)
T 2l04_A 12 TPASTSVVKGQSTTLTVAFQPEGVTDKSFRAVSADKTKATVSV-SGMTITVNGVAAGKVNIPV 73 (91)
T ss_dssp ECCCEEEETTCEEEEEEEECCSSCCCCCEEECCSCCSSCEEEE-ETTEEEEECSSSEEEECCE
T ss_pred ECCCEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCEEEEEC-CCCEEEEEEECCCEEEEEE
T ss_conf 0871499769879999999536467448999979999999996-6999999997075799999
No 5
>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion; 2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A
Probab=1.00 E-value=1 Score=50.22 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=56.8
Q ss_pred EEEEECCCCCCCCEEEEC-------------CCCEEEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEEEEEEE
Q ss_conf 999958994157726990-------------3965999996177236079996427508999924546999945647999
Q 000240 993 RVEVYAPPRIHPHDIFLV-------------PGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLI 1059 (1803)
Q Consensus 993 ~I~VfpPLrl~P~~itLv-------------~Gs~~qi~~~GGP~p~~~v~fs~~n~~VatV~~~~G~Vta~~~G~t~It 1059 (1803)
.++-|.+|.++- ++.++ -.+.|++...|| +..+.|+++|+.||+||. +|+|++++.|.++|+
T Consensus 4 ~v~ff~~l~id~-~v~iig~~v~g~lP~~wlqygqFkL~a~Gg---n~~ytW~Ssdp~IAsVDs-sG~VT~~~kGtatIT 78 (189)
T 3ncx_A 4 EVTFFDELKIDN-KVDIIGNNVRGELPNIWLQYGQFKLKASGG---DGTYSWYSENTSIATVDA-SGKVTLNGKGSVVIK 78 (189)
T ss_dssp CCCCCCCCEECS-SEEETTTTEEESCCSSEETTCEEECCEEST---TSCEEEEESCTTTEEECT-TSEEEECSSSCEEEE
T ss_pred CEEEEEEEEECC-CEEEEECCCCCCCCCHHHHCEEEEEEECCC---CCCEEEEECCCCEEEECC-CCCEEEECCCCEEEE
T ss_conf 168764676078-448996244777883011026999984699---862688848998678858-983898136847999
Q ss_pred EEEECC
Q ss_conf 999637
Q 000240 1060 ATVFGN 1065 (1803)
Q Consensus 1060 ~~v~~~ 1065 (1803)
++-.+.
T Consensus 79 ats~dg 84 (189)
T 3ncx_A 79 ATSGDK 84 (189)
T ss_dssp EEETTS
T ss_pred EECCCC
T ss_conf 991899
No 6
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=1.00 E-value=1 Score=49.78 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=22.6
Q ss_pred CEEEEECCCEEEEEECCC---EEEECCCCEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 069960695149990070---799447754999999303874034799999
Q 000240 346 DYKWFSSDMATVSITASG---VVQAKKPGKATVKVVSIFDSFNYDEIVIEV 393 (1803)
Q Consensus 346 ~y~WsSsn~~VasV~~~G---vvt~~~~G~t~I~a~d~~n~~n~~~~~V~V 393 (1803)
.+.|+|+|++||+|+.+| .+++...|+++|+|...++. ..++|.|.|
T Consensus 39 ~vtwsSsd~~vATVd~~G~~~~Vt~v~~GtatITatt~dG~-~~at~~VtV 88 (91)
T 2l04_A 39 SFRAVSADKTKATVSVSGMTITVNGVAAGKVNIPVVSGNGE-FAAVAEITV 88 (91)
T ss_dssp CEEECCSCCSSCEEEEETTEEEEECSSSEEEECCEEETTTT-EEECCEEEE
T ss_pred EEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEEEECCCC-EEEEEEEEE
T ss_conf 89999799999999966999999997075799999989999-899999999
No 7
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=1.00 E-value=1 Score=43.02 Aligned_cols=154 Identities=13% Similarity=0.106 Sum_probs=98.9
Q ss_pred EEEEEEECCEEEEECCCEEEEEEEEEECCCCEEECCCCEEEEEEEEECEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 37999965448996184999999996159996854772245889994000799961689999999843210599999377
Q 000240 891 DWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHL 970 (1803)
Q Consensus 891 ~~I~i~~p~~veVevG~tv~i~v~v~d~~G~~f~~s~~~~mdl~~~~~~~iv~l~~~~~~~~p~~e~~~~~~~~i~g~~~ 970 (1803)
..|+++ .+.+...=.....+.+++.| +|.++. . ....+..++.. +.......+. .+-....++....
T Consensus 4 ~~l~~~-k~~a~AdG~d~~t~tatV~D-~gnpv~-g----~~V~fs~~~G~--l~~~~~~Td~----~G~atvtltst~a 70 (282)
T 1f00_I 4 TEIKAD-KTTAVANGQDAITYTVKVMK-GDKPVS-N----QEVTFTTTLGK--LSNSTEKTDT----NGYAKVTLTSTTP 70 (282)
T ss_dssp EEEEES-CSEEESSSCCCEEEEEEEEE-TTEECT-T----CEEEEEESSSE--ESCSEEECCT----TSEEEEEEECSSC
T ss_pred EEEEEC-CCCEECCCCCEEEEEEEEEE-CCCCCC-C----CEEEEECCCCC--CCCCEEEECC----CCEEEEEEECCCC
T ss_conf 799976-77264167221899999997-992167-8----67999858973--1365257789----9579999982775
Q ss_pred EEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCCEEE-------------ECCCCEEEEEEEECCCCCEEEEEEECCCC
Q ss_conf 78999999980375089873289999589941577269-------------90396599999617723607999642750
Q 000240 971 GITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIF-------------LVPGASYMLTLKGGPTVGVYVDYTSTDEE 1037 (1803)
Q Consensus 971 G~TtLtas~~~~~G~~i~S~~~~I~VfpPLrl~P~~it-------------Lv~Gs~~qi~~~GGP~p~~~v~fs~~n~~ 1037 (1803)
|..+++|+..+ .+... ....|+-++++++.--.+. ...++.+++...||. ..+.|++++..
T Consensus 71 G~~~VtA~v~~-~~~~~--~a~~VtFva~~~i~~~~v~vng~~adg~~p~t~~~~a~~~l~~~~~n---~~ytWsSs~~~ 144 (282)
T 1f00_I 71 GKSLVSARVSD-VAVDV--KAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGN---GKYTWRSANPA 144 (282)
T ss_dssp EEECEEEEETT-CCCCE--ECCCEEEECCCEECTTCEEETTTCCEESCCSEEETTCEEECCEESTT---SCEEEEESCTT
T ss_pred EEEEEEEEECC-CCCCC--CCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCC---CEEEEECCCCC
T ss_conf 47999999778-76423--44551255012112321563065257668763311159999946996---15777426872
Q ss_pred EEEEE-CCCCEEEEEEEEEEEEEEEEEC
Q ss_conf 89999-2454699994564799999963
Q 000240 1038 IATIH-RSSGQLFAISPGNTTLIATVFG 1064 (1803)
Q Consensus 1038 VatV~-~~~G~Vta~~~G~t~It~~v~~ 1064 (1803)
+++|| . +|.|+-...|..+|+++-+.
T Consensus 145 ~~sVd~~-~G~Vt~~~~GtvtITatsg~ 171 (282)
T 1f00_I 145 IASVDAS-SGQVTLKEKGTTTISVISSD 171 (282)
T ss_dssp TEEECTT-TCEEEECSSSCEEEEEEETT
T ss_pred EEEECCC-CCEEEECCCCEEEEEEECCC
T ss_conf 6997078-76699778855999999699
No 8
>1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} SCOP: a.102.3.2 b.1.18.2 b.24.1.1 b.30.5.2 PDB: 1i8q_A* 1lxm_A*
Probab=1.00 E-value=1 Score=41.30 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=45.2
Q ss_pred CCCCEEEEECCCEEEEEECCCEEEECCCCEEEEEEEEECCCCCEEEEEEEEECCCC
Q ss_conf 98606996069514999007079944775499999930387403479999946631
Q 000240 343 TSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSS 398 (1803)
Q Consensus 343 ~~~~y~WsSsn~~VasV~~~Gvvt~~~~G~t~I~a~d~~n~~n~~~~~V~V~~p~~ 398 (1803)
..++|.|+++|++||+|+ .|++++...|.++|++.|..++. .+++.|.|..+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (814)
T 1f1s_A 26 NKADYQYTLTNPSLGKIV-GGILYPNATGSTTVKISDKSGKI-IKEVPLSVTASTE 79 (814)
T ss_dssp SSTTSEEEESSGGGEEEE-TTEEEECSCEEEEEEEECTTCCE-EEEEEEEEECCCC
T ss_pred CCCCEEEEECCCCEEEEE-CCEEEEECCCEEEEEEECCCCCE-EEEEEEECCCCCC
T ss_conf 568637996488358972-76788604864899998689987-8998742167783
No 9
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=1.00 E-value=1 Score=39.51 Aligned_cols=235 Identities=14% Similarity=0.154 Sum_probs=108.4
Q ss_pred EEEEEEEEECCCCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECEE-EEEEEEEEEEEEEEEEEEECCCC
Q ss_conf 99999999628999534993026838992077532699421366510256654379-99852234999999999841677
Q 000240 211 QYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRI-LKATSQGLGKLTASLTYFSGLHD 289 (1803)
Q Consensus 211 ~Y~i~v~lfd~~~~~~~iyit~~~~i~~~~~~~~~~~i~~~~~~~ng~y~~~n~~~-v~a~~~G~~~I~Asl~~~~~~~~ 289 (1803)
...+.+.|.|++ | +++ - +..+.+..+......-....++.+|.+ .. ++..++|..+|+|++...
T Consensus 27 ~~~ltatV~D~~-G-npv-~--g~~Vtf~~~~g~~~~~~t~~Td~~G~a-----~~tltst~aG~~~VtAt~~g~----- 91 (492)
T 1cwv_A 27 AITVEFTVADFE-G-KPL-A--GQEVVITTNNGALPNKITEKTDANGVA-----RIALTNTTDGVTVVTAEVEGQ----- 91 (492)
T ss_dssp CEEEEEEEECTT-S-CBC-C--SCEEEEECCTTCBSCEEEEECCTTSEE-----EEEEBCSSCEEEEEEEEETTE-----
T ss_pred EEEEEEEEECCC-C-CCC-C--CCEEEEEECCCCCCCCCCEEECCCCEE-----EEEEECCCCEEEEEEEEECCC-----
T ss_conf 089999999489-9-987-9--988999978984014420445899659-----999976765279999997984-----
Q ss_pred CEEEEEEEEEEEEEE--------EEEEEECCCCCCCCEEEECCCCCCE-EEEEEEEECCCC--CCCCCEEEEECCCEEEE
Q ss_conf 435688889999996--------7798203678887369902756721-579999923688--99860699606951499
Q 000240 290 TKEVLKVVQEIMVCD--------RIKFSLDQTNGVSESILLPWAPGIY-QEVELMATGGCA--KTSSDYKWFSSDMATVS 358 (1803)
Q Consensus 290 ~~~~i~~~qev~I~~--------~i~i~~~~~~~~p~~i~lP~~~~~~-q~~~L~a~GGsg--~~~~~y~WsSsn~~Vas 358 (1803)
....++.+.. .+.+ .|.-+. ..+.. ..+++++.-..| -......|+..+..+..
T Consensus 92 -----s~s~~v~f~a~~~~a~~s~l~~-------~~~~~~---A~g~~~~tltatv~Da~GNpv~g~~Vtf~~~~g~~~~ 156 (492)
T 1cwv_A 92 -----RQSVDTHFVKGTIAADKSTLAA-------VPTSII---ADGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGV 156 (492)
T ss_dssp -----EEEEEEEEECCCBCGGGCEEEE-------ESSEEE---TTSSCCEEEEEECBBTTSCBCCSCCEEEEESSSEECC
T ss_pred -----CCEEEEEEEECCCCCCCEEEEE-------ECCCEE---CCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEE
T ss_conf -----1026789863147643205998-------334124---1773048999999948999958858999977984234
Q ss_pred E--ECCCEEEEC----CCCEEEEEEEEECCCCCEEEEEEEEEC-------CCCEEEEECCCEEEEECCEEEEEEEEEECC
Q ss_conf 9--007079944----775499999930387403479999946-------631599008517997186899999997139
Q 000240 359 I--TASGVVQAK----KPGKATVKVVSIFDSFNYDEIVIEVST-------PSSMVMLRNFPVETVVGSHLQAAVTMKTLN 425 (1803)
Q Consensus 359 V--~~~Gvvt~~----~~G~t~I~a~d~~n~~n~~~~~V~V~~-------p~~i~i~p~~~~E~~Vg~~L~L~v~~~~~~ 425 (1803)
+ +.+|+.+.. ..|..+|.|.......-.....|.+.. ...+.+-+ ....+--.+...|.+.+.|.+
T Consensus 157 ~Ttd~~G~at~tlts~~aG~~tVtA~v~g~~~~~~s~~vtf~a~~~~~~~~~~l~v~~-~~~~A~g~~~~tltatv~D~~ 235 (492)
T 1cwv_A 157 ITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFTADPIPDAGRSSFTVST-PDILADGTMSSTLSFVPVDKN 235 (492)
T ss_dssp CEECSSSEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEEEECCSSCCTTTCEEEESC-SEEETTSCCCEEEEEECBCTT
T ss_pred EEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECC-CCEEECCCCEEEEEEEEECCC
T ss_conf 6866894899999846763899999988852123425799981676543013576266-616607864089999999899
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECEEEEEEEEEEEE
Q ss_conf 8301357897426999517863699037766421012588533455579985069999810042999999840
Q 000240 426 GAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSK 498 (1803)
Q Consensus 426 G~~Fs~C~~l~~~vews~~~~vf~i~~~~~~~~~l~~~~~~~~~~~~~~~~Cs~~~i~a~~~G~t~ltvs~~~ 498 (1803)
|+++..... +.|..+...+..-+- .....-+.+.+++...|..++++.+..
T Consensus 236 GNpv~g~~~----V~f~~~G~~v~~s~~------------------T~~~G~~t~t~t~~~aG~~tVtA~~~g 286 (492)
T 1cwv_A 236 GHFISGMQG----LSFTQNGVPVSISPI------------------TEQPDSYTATVVGNSVGDVTITPQVDT 286 (492)
T ss_dssp SCBCCSCCS----EEEEEEESCCEECCC------------------EECSSCEEEEEECSSCEEEEEEEEETT
T ss_pred CCCCCCCCE----EEEECCCCEEEEEEE------------------ECCCCEEEEEEECCCCEEEEEEEEECC
T ss_conf 899467744----999538942532137------------------337854999997586137999999788
No 10
>1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} SCOP: a.102.3.2 b.1.18.2 b.24.1.1 b.30.5.2 PDB: 1i8q_A* 1lxm_A*
Probab=1.00 E-value=1 Score=26.32 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=33.1
Q ss_pred CCCEEEEEECCCEEEEECCCCEEEEEEEECEEEEEEECC
Q ss_conf 986399992873699956843599997432599999555
Q 000240 122 SPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTR 160 (1803)
Q Consensus 122 s~~y~~~~~n~~Va~id~~~~~vtA~~lG~T~V~l~d~n 160 (1803)
.++|.|++.|+.||++++ |+++|++.|.|.|.+.|+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~--g~~~~~~~g~~~~~~~~~~ 63 (814)
T 1f1s_A 27 KADYQYTLTNPSLGKIVG--GILYPNATGSTTVKISDKS 63 (814)
T ss_dssp STTSEEEESSGGGEEEET--TEEEECSCEEEEEEEECTT
T ss_pred CCCEEEEECCCCEEEEEC--CEEEEECCCEEEEEEECCC
T ss_conf 686379964883589727--6788604864899998689
Done!