BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000242
         (1801 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359481849|ref|XP_002276633.2| PREDICTED: protein RRP5 homolog [Vitis vinifera]
          Length = 1879

 Score = 2613 bits (6773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1319/1815 (72%), Positives = 1523/1815 (83%), Gaps = 81/1815 (4%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MKLWGVVAEVNEKDL I LPGGLRGL RA++A DP+  NEI+  E   LP IFH+GQLVS
Sbjct: 132  MKLWGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFHIGQLVS 191

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
            C+VLQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGYILHFGL
Sbjct: 192  CVVLQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGYILHFGL 251

Query: 121  PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 180
            PSFTGFLP+++ A+ + I++  G +LQGV+RSID+  KVVYLSSDPDT+SKCVTKDLKGI
Sbjct: 252  PSFTGFLPKSSQADQN-IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVTKDLKGI 310

Query: 181  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
            SIDLL+PGMMV+ RVQS  ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYNQ+KKVN
Sbjct: 311  SIDLLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYNQNKKVN 370

Query: 241  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
            ARILF+DP++RAVGLTLNP+L++N+APP  VK GDIYD SKV+RVDRGLGLLL++PSTP 
Sbjct: 371  ARILFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLEVPSTPA 430

Query: 301  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 360
            STP YVT               YKEGS VRVRILGFR+LEGLA G LKASAFEG VFTHS
Sbjct: 431  STPTYVT---------------YKEGSHVRVRILGFRNLEGLAMGTLKASAFEGSVFTHS 475

Query: 361  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
            DVKPGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAEL+FRVL
Sbjct: 476  DVKPGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAELIFRVL 535

Query: 421  GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
            G KSKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNGVQGFAP
Sbjct: 536  GCKSKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNGVQGFAP 595

Query: 481  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 540
             SELGL+PGC  S MYHVGQVVKCR+  S+PASRRINL           +D+VKLGS+V 
Sbjct: 596  SSELGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINL-----------NDMVKLGSVVG 644

Query: 541  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 600
            GVVD VTP+A++V V AKGY KGTI TEHLADH  HA +MKS +KPGYEFDQLLVLD E 
Sbjct: 645  GVVDRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLLVLDVEG 704

Query: 601  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 660
            +N +LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF+PR+K 
Sbjct: 705  NNFILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGFSPRNKV 764

Query: 661  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 720
            +D QRA  S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FLLEEKIA
Sbjct: 765  MDDQRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFLLEEKIA 824

Query: 721  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 780
             LQ S    SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+QL   T 
Sbjct: 825  KLQLSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQL---TA 881

Query: 781  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 840
            E GS +QA +LDVAK ERLVDLSLK  F+DR +E +SN QA KKKR+REA K+L  HQTV
Sbjct: 882  ERGSTVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKELQPHQTV 941

Query: 841  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 900
            NAIVEIVKENYLVLSLPEYN++IGYASVSDYNTQKF QKQFL+GQSVIA+VMALPS ST 
Sbjct: 942  NAIVEIVKENYLVLSLPEYNYAIGYASVSDYNTQKFAQKQFLHGQSVIASVMALPSPSTV 1001

Query: 901  GRLLLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 959
            GRLLL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGFHGR+HI
Sbjct: 1002 GRLLLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGFHGRVHI 1061

Query: 960  TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLTVS-EIG 1017
            TEV D+  NV+EN FSNF+IGQTV+ARI+AK+NK +   K+  WELSIKP MLT S E+ 
Sbjct: 1062 TEVCDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLTGSIEVE 1119

Query: 1018 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1077
            +KL+  E  +S GQRVTGYVYKV+NEW  LTISRH+KAQLF+LD++ EP+ELQEFQ+RF 
Sbjct: 1120 NKLVDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQEFQKRFE 1179

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQ--DGISD-KTVDISN-------DNMQTFIHEGD 1127
            +GKAV+G+VLS NKEKKLLR+VL  F   +G  D K ++I N       +N+   IH+GD
Sbjct: 1180 VGKAVSGYVLSANKEKKLLRMVLHQFSVSNGTLDGKVLNIDNQHCNPPIENLIPHIHKGD 1239

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
             +GGRISKIL GVGGL+VQIGPHLYG+VHFTELK+  VSDPLSGY E           GQ
Sbjct: 1240 TLGGRISKILPGVGGLLVQIGPHLYGKVHFTELKDSWVSDPLSGYHE-----------GQ 1288

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
            FVKCKVLEI  + +GT HV+LSL SSL+GM S NS             +EKI++L  +M+
Sbjct: 1289 FVKCKVLEIGHSEKGTVHVDLSLWSSLNGMHSPNS------------RVEKIDNLHSDML 1336

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            VQGYVKNVTSKGCFI+LSRKLDA++LL+NLSDGYVE PE+EFPIGKLV+GRVLSVEPLS+
Sbjct: 1337 VQGYVKNVTSKGCFILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLSVEPLSR 1396

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
            RVEVTLKTS + +  +SE+N+ S++ VGDI+ G IKRVESYGLFITI++TN+VGLCH+SE
Sbjct: 1397 RVEVTLKTSSATSVQKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMVGLCHISE 1456

Query: 1368 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            LS+DH+ NIET Y+AGE+V  KILKVD+E+ RISLGMK+SY K    N            
Sbjct: 1457 LSDDHISNIETKYKAGERVAAKILKVDEERHRISLGMKNSYIKETTQNNGF--------- 1507

Query: 1428 IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMD 1486
               V     S+ LEN+S  +Q++D+E ED    VL+Q+ESRAS+ PLEV+LDD    ++D
Sbjct: 1508 ---VDDTQLSTFLENNSREIQNLDVEYEDEEYPVLSQVESRASILPLEVDLDDVNHSNLD 1564

Query: 1487 NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVR 1546
            + + QN  +T+E  TIDEK+ R AKKK KEE+EQEIRAAEERL+  D PRT DEFE+LVR
Sbjct: 1565 DAVGQNHIYTNETNTIDEKSKRRAKKKAKEEKEQEIRAAEERLMLNDVPRTADEFEKLVR 1624

Query: 1547 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1606
             SPNSSF+WIKYMA MLS+AD+EKARSIAERAL+TINIREE+EKLNIW+AYFNLENEYGN
Sbjct: 1625 GSPNSSFLWIKYMALMLSLADIEKARSIAERALRTINIREESEKLNIWMAYFNLENEYGN 1684

Query: 1607 PPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR 1666
            PPEEAVVKVFQRALQYCDPKKVHLALLG+YERTEQ+KLADELL KM KKFKHSCKVWLRR
Sbjct: 1685 PPEEAVVKVFQRALQYCDPKKVHLALLGMYERTEQHKLADELLEKMTKKFKHSCKVWLRR 1744

Query: 1667 VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1726
            VQ +LKQ Q+GVQ V+ RALL LPRHKHIKFISQTAILEFK+GV DRGRSMFEG+L EYP
Sbjct: 1745 VQNVLKQHQDGVQPVINRALLCLPRHKHIKFISQTAILEFKSGVPDRGRSMFEGMLREYP 1804

Query: 1727 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1786
            KRTDLWS+YLDQEIRLGD+D+IR LFERAI+LSL P+KMKFLFKKYLEYEKS G+EERIE
Sbjct: 1805 KRTDLWSVYLDQEIRLGDIDIIRALFERAINLSLEPRKMKFLFKKYLEYEKSQGDEERIE 1864

Query: 1787 YVKQKAMEYVESTLA 1801
             VK+KAMEY  STLA
Sbjct: 1865 SVKRKAMEYANSTLA 1879


>gi|297739784|emb|CBI29966.3| unnamed protein product [Vitis vinifera]
          Length = 1862

 Score = 2612 bits (6771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1314/1805 (72%), Positives = 1516/1805 (83%), Gaps = 78/1805 (4%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MKLWGVVAEVNEKDL I LPGGLRGL RA++A DP+  NEI+  E   LP IFH+GQLVS
Sbjct: 132  MKLWGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFHIGQLVS 191

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
            C+VLQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGYILHFGL
Sbjct: 192  CVVLQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGYILHFGL 251

Query: 121  PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 180
            PSFTGFLP+++ AEN  I++  G +LQGV+RSID+  KVVYLSSDPDT+SKCVTKDLKGI
Sbjct: 252  PSFTGFLPKSSQAEN--IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVTKDLKGI 309

Query: 181  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
            SIDLL+PGMMV+ RVQS  ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYNQ+KKVN
Sbjct: 310  SIDLLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYNQNKKVN 369

Query: 241  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
            ARILF+DP++RAVGLTLNP+L++N+APP  VK GDIYD SKV+RVDRGLGLLL++PSTP 
Sbjct: 370  ARILFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLEVPSTPA 429

Query: 301  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 360
            STP YVT+ DVA+EEVRK+EKKYKEGS VRVRILGFR+LEGLA G LKASAFEG VFTHS
Sbjct: 430  STPTYVTLFDVADEEVRKMEKKYKEGSHVRVRILGFRNLEGLAMGTLKASAFEGSVFTHS 489

Query: 361  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
            DVKPGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAEL+FRVL
Sbjct: 490  DVKPGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAELIFRVL 549

Query: 421  GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
            G KSKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNGVQGFAP
Sbjct: 550  GCKSKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNGVQGFAP 609

Query: 481  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 540
             SELGL+PGC  S MYHVGQVVKCR+  S+PASRRINLSF++KPTR+SEDD+VKLGS+V 
Sbjct: 610  SSELGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINLSFIIKPTRISEDDMVKLGSVVG 669

Query: 541  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 600
            GVVD VTP+A++V V AKGY KGTI TEHLADH  HA +MKS +KPGYEFDQLLVLD E 
Sbjct: 670  GVVDRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLLVLDVEG 729

Query: 601  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 660
            +N +LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF+PR+K 
Sbjct: 730  NNFILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGFSPRNKV 789

Query: 661  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 720
            +D QRA  S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FLLEEKIA
Sbjct: 790  MDDQRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFLLEEKIA 849

Query: 721  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 780
             LQ S    SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+QL   T 
Sbjct: 850  KLQLSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQL---TA 906

Query: 781  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 840
            E GS +QA +LDVAK ERLVDLSLK  F+DR +E +SN QA KKKR+REA K+L  HQTV
Sbjct: 907  ERGSTVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKELQPHQTV 966

Query: 841  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 900
            NAIVEIVKENYL  S                      +KQFL+GQSVIA+VMALPS ST 
Sbjct: 967  NAIVEIVKENYLASSF-------------------IARKQFLHGQSVIASVMALPSPSTV 1007

Query: 901  GRLLLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 959
            GRLLL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGFHGR+HI
Sbjct: 1008 GRLLLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGFHGRVHI 1067

Query: 960  TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLTVS-EIG 1017
            TEV D+  NV+EN FSNF+IGQTV+ARI+AK+NK +   K+  WELSIKP MLT S E+ 
Sbjct: 1068 TEVCDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLTGSIEVE 1125

Query: 1018 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1077
            +KL+  E  +S GQRVTGYVYKV+NEW  LTISRH+KAQLF+LD++ EP+ELQEFQ+RF 
Sbjct: 1126 NKLVDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQEFQKRFE 1185

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
            +GKAV+G+VLS NKEKKLLR+VL  F              N+   IH+GD +GGRISKIL
Sbjct: 1186 VGKAVSGYVLSANKEKKLLRMVLHQFS-------------NLIPHIHKGDTLGGRISKIL 1232

Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
             GVGGL+VQIGPHLYG+VHFTELK+  VSDPL           SGY EGQFVKCKVLEI 
Sbjct: 1233 PGVGGLLVQIGPHLYGKVHFTELKDSWVSDPL-----------SGYHEGQFVKCKVLEIG 1281

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1257
             + +GT HV+LSL SSL+GM S NS             +EKI++L  +M+VQGYVKNVTS
Sbjct: 1282 HSEKGTVHVDLSLWSSLNGMHSPNS------------RVEKIDNLHSDMLVQGYVKNVTS 1329

Query: 1258 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
            KGCFI+LSRKLDA++LL+NLSDGYVE PE+EFPIGKLV+GRVLSVEPLS+RVEVTLKTS 
Sbjct: 1330 KGCFILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLSVEPLSRRVEVTLKTSS 1389

Query: 1318 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
            + +  +SE+N+ S++ VGDI+ G IKRVESYGLFITI++TN+VGLCH+SELS+DH+ NIE
Sbjct: 1390 ATSVQKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMVGLCHISELSDDHISNIE 1449

Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRS 1437
            T Y+AGE+V  KILKVD+E+ RISLGMK+SY K    N               V     S
Sbjct: 1450 TKYKAGERVAAKILKVDEERHRISLGMKNSYIKETTQNNGF------------VDDTQLS 1497

Query: 1438 SLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHT 1496
            + LEN+S  +Q++D+E ED    VL+Q+ESRAS+ PLEV+LDD    ++D+ + QN  +T
Sbjct: 1498 TFLENNSREIQNLDVEYEDEEYPVLSQVESRASILPLEVDLDDVNHSNLDDAVGQNHIYT 1557

Query: 1497 DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1556
            +E  TIDEK+ R AKKK KEE+EQEIRAAEERL+  D PRT DEFE+LVR SPNSSF+WI
Sbjct: 1558 NETNTIDEKSKRRAKKKAKEEKEQEIRAAEERLMLNDVPRTADEFEKLVRGSPNSSFLWI 1617

Query: 1557 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1616
            KYMA MLS+AD+EKARSIAERAL+TINIREE+EKLNIW+AYFNLENEYGNPPEEAVVKVF
Sbjct: 1618 KYMALMLSLADIEKARSIAERALRTINIREESEKLNIWMAYFNLENEYGNPPEEAVVKVF 1677

Query: 1617 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQE 1676
            QRALQYCDPKKVHLALLG+YERTEQ+KLADELL KM KKFKHSCKVWLRRVQ +LKQ Q+
Sbjct: 1678 QRALQYCDPKKVHLALLGMYERTEQHKLADELLEKMTKKFKHSCKVWLRRVQNVLKQHQD 1737

Query: 1677 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1736
            GVQ V+ RALL LPRHKHIKFISQTAILEFK+GV DRGRSMFEG+L EYPKRTDLWS+YL
Sbjct: 1738 GVQPVINRALLCLPRHKHIKFISQTAILEFKSGVPDRGRSMFEGMLREYPKRTDLWSVYL 1797

Query: 1737 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            DQEIRLGD+D+IR LFERAI+LSL P+KMKFLFKKYLEYEKS G+EERIE VK+KAMEY 
Sbjct: 1798 DQEIRLGDIDIIRALFERAINLSLEPRKMKFLFKKYLEYEKSQGDEERIESVKRKAMEYA 1857

Query: 1797 ESTLA 1801
             STLA
Sbjct: 1858 NSTLA 1862


>gi|356533079|ref|XP_003535096.1| PREDICTED: protein RRP5 homolog [Glycine max]
          Length = 1885

 Score = 2364 bits (6126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1197/1805 (66%), Positives = 1458/1805 (80%), Gaps = 61/1805 (3%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MKLWGVVAEVNEKDLV+ LPGGLRGL  A+DA+DPI D++IE  E   L  +F VGQLVS
Sbjct: 132  MKLWGVVAEVNEKDLVVSLPGGLRGLVHASDAVDPIFDDKIEVGEI-FLSGVFCVGQLVS 190

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
            C+VL+LDDDKKE G RKIWLSLRLSLL+K  +L+ VQEGMVL AYVKSIEDHGYILHFGL
Sbjct: 191  CVVLRLDDDKKEKGSRKIWLSLRLSLLHKNYNLDVVQEGMVLAAYVKSIEDHGYILHFGL 250

Query: 121  PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 180
            P F GFLP+N+ A   G +VK G LLQG+VRSID+ RKVVYLSSDPDT++K VTKDL+G+
Sbjct: 251  PFFMGFLPKNSSAGWGG-EVKIGKLLQGLVRSIDKVRKVVYLSSDPDTITKSVTKDLRGL 309

Query: 181  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
            SIDLLVPGM+V+  V+SILENGVMLSFLTYFTGTVD+FHLQN +P  NWK+  ++ +KV 
Sbjct: 310  SIDLLVPGMLVNACVKSILENGVMLSFLTYFTGTVDLFHLQNIYPGKNWKDKCSESQKVV 369

Query: 241  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
            +RILF+DP+SRAVGLTLNP+L+ NRAPPSHVK+GDIYD SKVVRVDRGLGLLL++PS P 
Sbjct: 370  SRILFIDPSSRAVGLTLNPHLVQNRAPPSHVKIGDIYDNSKVVRVDRGLGLLLEVPSIPE 429

Query: 301  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 360
             TPA+V+               YKEG+ VRVRILG R+LEG+ATG+LKASA E  VFTHS
Sbjct: 430  PTPAFVS---------------YKEGNHVRVRILGLRYLEGIATGVLKASALEEEVFTHS 474

Query: 361  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
            DVKPGMVVK K+++VDSFGAIVQ PGGVKALCPL HMSE EI KPGKKFKVGAELVFRVL
Sbjct: 475  DVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEISKPGKKFKVGAELVFRVL 534

Query: 421  GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
            G KSKR+TVTHKKTLVKSKL I+SSYA+ATD LITHGWITKIE HGCFVRFYNGVQGFAP
Sbjct: 535  GCKSKRVTVTHKKTLVKSKLGIISSYADATDGLITHGWITKIEVHGCFVRFYNGVQGFAP 594

Query: 481  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 540
            RSELGL+PG +P ++Y+VGQ VKCR++S IPASRRINL           +D+V LGSLVS
Sbjct: 595  RSELGLEPGADPGTVYNVGQAVKCRVISCIPASRRINL-----------NDMVTLGSLVS 643

Query: 541  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 600
            G VD +T NAVVVYV A G+S+GTI  EHLADH   A +M SV+KPGY FDQLLVLD + 
Sbjct: 644  GAVDRITSNAVVVYVNASGFSRGTISMEHLADHHGQAILMHSVLKPGYNFDQLLVLDVKG 703

Query: 601  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 660
            +NL+LSAK SLI  AQQ+P+D + IHPNSVVHGY+CN+IE+GCFVRFLG LTGFAPR+KA
Sbjct: 704  NNLILSAKSSLIKHAQQIPADINQIHPNSVVHGYICNLIESGCFVRFLGHLTGFAPRNKA 763

Query: 661  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 720
             D Q++++ + YY+GQSVRSNI +V+SETGR+TLSLKQ+ CSSTDASF+Q++FL+++KIA
Sbjct: 764  ADDQKSNILEAYYIGQSVRSNISNVSSETGRVTLSLKQTACSSTDASFIQDYFLMDDKIA 823

Query: 721  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 780
             L+      S+ KW EGF IG V +GKV    D G+V+SFE ++DV+GFI ++QLAG  +
Sbjct: 824  RLEYCGSGASDTKWDEGFNIGMVAKGKVKAVEDVGLVISFEHYNDVFGFIANYQLAGTIL 883

Query: 781  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 840
            ESGS+++A +LDV KA++LV+L+LK  FI+R +E++ +R   KKKR+REASKDL +HQTV
Sbjct: 884  ESGSIVEALVLDVGKADKLVELTLKPEFINRSKESSISR-TNKKKRRREASKDLVLHQTV 942

Query: 841  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 900
            NA+VEIVKENYLVLS+PE +++IGYASVSDYN Q+FP KQ+ NGQSV+ATVMALPS  T+
Sbjct: 943  NAVVEIVKENYLVLSIPENDYTIGYASVSDYNAQRFPHKQYQNGQSVVATVMALPSPETS 1002

Query: 901  GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 960
            GRLLLL+  ++ET +SS +  KK S   VG+LV+AEIT+IK LEL+LKFG G +GRIHIT
Sbjct: 1003 GRLLLLVDVVNETSSSSKRTKKKSSYK-VGTLVEAEITDIKTLELKLKFGFGLYGRIHIT 1061

Query: 961  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD-MKKSFLWELSIKPSMLT-VSEIGS 1018
            EV     NV+EN FS++K+GQTVTARI+AK N+ D  +K   WELS++P M+T  S+I  
Sbjct: 1062 EVY--YGNVLENPFSSYKVGQTVTARIVAKPNESDGNRKGSQWELSVRPEMVTGSSDIDD 1119

Query: 1019 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1078
              + E  +  IGQ V GYVYKV++EW  LTISR+++AQL+ILDSA EPSEL++FQ R+H+
Sbjct: 1120 --VSENLEFKIGQCVAGYVYKVESEWVWLTISRNVRAQLYILDSATEPSELEDFQNRYHV 1177

Query: 1079 GKAVTGHVLSINKEKKLLRLVLRPFQD---GISDKTV-DISNDNMQTFIHEGDIVGGRIS 1134
            G+ V+GH+LS+N EKKLLRLV+RPF     G S++ + ++ + ++  ++HEGDI+GGR+S
Sbjct: 1178 GQPVSGHILSVNMEKKLLRLVVRPFSTLSCGTSEEPLTNVVDKDLTAYVHEGDILGGRVS 1237

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
            KIL GVGGL+VQ+GP  YG+VHFTEL +  V DPLSGY E Q           FVKC VL
Sbjct: 1238 KILPGVGGLLVQVGPRTYGKVHFTELADTWVPDPLSGYHEEQ-----------FVKCIVL 1286

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
            E+S TV+GT HV+LSL SS   +S  ++      V+   K +EKIEDL P+MIV+GY+KN
Sbjct: 1287 EVSHTVKGTIHVDLSLGSSNVKLSQDSA------VNANSKCVEKIEDLHPDMIVKGYIKN 1340

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            VTSKGCFIMLSRK+DAK+LLSNLS+ YV+ PEKEFP+GKLV GRV SVEPLS RVEVTLK
Sbjct: 1341 VTSKGCFIMLSRKIDAKILLSNLSEQYVQEPEKEFPVGKLVIGRVTSVEPLSNRVEVTLK 1400

Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
             S +    +SEI +LS  HVGD+V G+IKRVES+GLFI I+NTN+VGLCH+SE+S++ ++
Sbjct: 1401 MSTAPNIPKSEIIDLSKFHVGDVVSGRIKRVESFGLFIAIDNTNMVGLCHISEISDNRIE 1460

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSY 1434
            NIE  YRAGE+VK +ILKVD+E+ RISLGMK+SY + +   LQ+ S+EESDE I  V   
Sbjct: 1461 NIEANYRAGERVKARILKVDEERHRISLGMKNSYMRGET-VLQIPSKEESDEPI--VDGM 1517

Query: 1435 NRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQ 1493
               + + +S     ++D+E E     +L+Q + RA +PPL+V LDD +Q D +N  SQ++
Sbjct: 1518 KSITSMNSSLFGTSNIDVEDEINQFPILSQAQERADIPPLDVALDDFDQFDANNANSQSE 1577

Query: 1494 GHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSF 1553
             H +E   ++EK+ R  KKK KEERE++IRAAEERLLE D PRT DEFERL+RSSPNSSF
Sbjct: 1578 EHANEEDIVNEKHKRREKKKAKEEREKQIRAAEERLLEDDVPRTADEFERLIRSSPNSSF 1637

Query: 1554 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613
             WIKYM FM+SMADVEKARSIAERAL+TINIREENEKLNIW AYFNLEN+YGNP EEAV+
Sbjct: 1638 TWIKYMDFMVSMADVEKARSIAERALRTINIREENEKLNIWKAYFNLENKYGNPREEAVM 1697

Query: 1614 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1673
            KVFQRALQY DPKKV+LALLG+YERTEQ+ LADELL KM KKFKHSCKVWLRR+Q LLKQ
Sbjct: 1698 KVFQRALQYNDPKKVYLALLGMYERTEQHNLADELLNKMTKKFKHSCKVWLRRIQSLLKQ 1757

Query: 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
             ++G+Q V+ RA LSLP+HKHIKF SQTAILEFK G  DRGRSMFE IL EYPKRTDLWS
Sbjct: 1758 NKDGIQPVIDRASLSLPKHKHIKFFSQTAILEFKVGFPDRGRSMFEKILREYPKRTDLWS 1817

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +YLDQEI+  D D+I  LFERA+SLSLPPKKMKFLFKKYL+YE S G++ERIE VK+KA+
Sbjct: 1818 VYLDQEIQHKDEDIIHALFERAVSLSLPPKKMKFLFKKYLDYEMSQGDQERIESVKRKAI 1877

Query: 1794 EYVES 1798
            EYVES
Sbjct: 1878 EYVES 1882


>gi|449453908|ref|XP_004144698.1| PREDICTED: protein RRP5 homolog [Cucumis sativus]
          Length = 1898

 Score = 2247 bits (5822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1162/1827 (63%), Positives = 1413/1827 (77%), Gaps = 79/1827 (4%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MK WGVVAEVN+KDLVI LPGGLRGL  AA+A DPIL+ E+E  E +LLP +FHVGQLV 
Sbjct: 125  MKFWGVVAEVNKKDLVISLPGGLRGLVSAAEAFDPILEKEVEDTEHDLLPVMFHVGQLVP 184

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
            C+VL++DDDKKE GKRKIWLSLRLS+LYK  +L+ +QEGMVLT+YVKSIEDHGYILHFGL
Sbjct: 185  CVVLKVDDDKKESGKRKIWLSLRLSMLYKDFTLDLLQEGMVLTSYVKSIEDHGYILHFGL 244

Query: 121  PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 180
             SFTGFLP+   +    + +  G LLQ VVRSID+TRKVVY SSD D VS  V KDLKGI
Sbjct: 245  TSFTGFLPKTKQSGKKSL-LHVGQLLQCVVRSIDKTRKVVYFSSDQDIVSSSVAKDLKGI 303

Query: 181  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
            SIDLL+PGMMVS RVQS LENG++LSFLTYF GTVD+FHLQN+F ++NWK+ YNQ+ K+N
Sbjct: 304  SIDLLIPGMMVSARVQSTLENGILLSFLTYFNGTVDMFHLQNSFHSSNWKDFYNQNMKMN 363

Query: 241  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
            ARILF+DP++RAVGLTL P+L+ N+A P HV++GDIYD +KVVRVDRG GLLL++PS+P 
Sbjct: 364  ARILFIDPSTRAVGLTLIPHLVRNKAAPPHVRIGDIYDSAKVVRVDRGFGLLLEVPSSPE 423

Query: 301  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 360
            STP +V+               +KEGS VRVRILGFRHLEGLA G LKASAFEG VF++S
Sbjct: 424  STPTFVS---------------FKEGSRVRVRILGFRHLEGLAIGTLKASAFEGPVFSYS 468

Query: 361  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
            DVKPG +++ KVI VD FGAIVQFPGG+KALCPL HMSEFEI KP KKFKVGAEL+FRVL
Sbjct: 469  DVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPRKKFKVGAELIFRVL 528

Query: 421  GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
            G KSKRITVTHKKTLVKSKL +LSSYA+AT  L+THGWITKIEKHGCFVRFYNGVQGFAP
Sbjct: 529  GCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIEKHGCFVRFYNGVQGFAP 588

Query: 481  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 540
            R ELG++PG +PSS YH+GQV+KCRI SS  +S+RI+L           +  V+LG +V+
Sbjct: 589  RFELGIEPGSDPSSTYHIGQVIKCRITSSTHSSKRISL-----------NTKVELGCIVT 637

Query: 541  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 600
            GVVD +T   V +Y+    YS+G I TEHL+DH  HA+ +KSV+KPGY+FDQLLVL  E 
Sbjct: 638  GVVDEITETHVTLYINRTDYSRGRISTEHLSDHQAHASSIKSVLKPGYQFDQLLVLAIEG 697

Query: 601  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 660
             +L+LSAK SLI  A  LPSD+SH++P S++HG++CNIIE GCFVRFLGRLTGF+PR+KA
Sbjct: 698  ESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICNIIEAGCFVRFLGRLTGFSPRNKA 757

Query: 661  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 720
            +  Q+  L +TYY+GQSVRSN++DV+ ETGRITLSLKQS C STDASF+QE F  EEKIA
Sbjct: 758  MQDQKLYLRETYYIGQSVRSNVVDVSGETGRITLSLKQSTCFSTDASFIQEFFSTEEKIA 817

Query: 721  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 780
             LQS      E  W E F IGSV+EG+V E  D GV +SFE++ DV+GFI  H L+G+ V
Sbjct: 818  KLQSL----DESNWAEEFAIGSVVEGEVQEVKDIGVTISFEKYHDVFGFIALHGLSGSIV 873

Query: 781  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 840
            E+GS IQAA+LDV+K ERLVDLSLK   +D++   +S+RQ  +KKRK EA KDL ++QTV
Sbjct: 874  ETGSTIQAAVLDVSKTERLVDLSLKPELVDKW-GGSSSRQTNRKKRKAEAPKDLEMNQTV 932

Query: 841  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 900
            + +VE VKENYLVLSLPE+ H+IGYAS  DYNTQ+  QK F  GQSV+ATV+ALP  ST 
Sbjct: 933  HTVVEAVKENYLVLSLPEFGHAIGYASTYDYNTQRLHQKHFTVGQSVVATVVALPCPSTF 992

Query: 901  GRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 959
            GRLLLLLK+ISE   T  SKR++K SS +VGSLV AEI +++PLE+RLKFG+G  GRIH+
Sbjct: 993  GRLLLLLKSISEAIVTPGSKRSRKNSSCEVGSLVHAEIIDVQPLEMRLKFGVGLRGRIHV 1052

Query: 960  TE----VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLT-V 1013
            TE    V++      E  FSNF++GQTV ARI+A++N    K K +LWELS+KP +L   
Sbjct: 1053 TEFCAQVSNTPDEASEAPFSNFRVGQTVVARIVAEANHSASKGKGYLWELSVKPEVLKDF 1112

Query: 1014 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1073
            S +G +++ E+   SIGQRVT YV  V+ +WA L ++R + AQLFILDS+ EPSELQEF 
Sbjct: 1113 SAVGGEIVNEDLGFSIGQRVTAYVSNVNGDWAWLAVTRRVSAQLFILDSSSEPSELQEFS 1172

Query: 1074 RRFHIGKAVTGHVLSINKEKKLLRLVLR---PFQDGISD----KTVDISNDNMQTFI--- 1123
            + F++GKAV+G++ +I  EKK+LRLVL        G SD    K  ++  D  +  I   
Sbjct: 1173 KHFYVGKAVSGYISNIIGEKKILRLVLHHLSAISSGKSDEENSKISNLPTDVCKKVICHL 1232

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
            +EGDIVGGRISKIL GVGGL+VQIGPHL+GRVH+TEL +  V DPLSGY E         
Sbjct: 1233 NEGDIVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPLSGYKE--------- 1283

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
              GQFVKCKV+EI+  V+GT H++LSLRSS   +   N    + +    G+   KIED+ 
Sbjct: 1284 --GQFVKCKVIEITHAVKGTTHIDLSLRSSAGILCQKNIECSNHENIASGR--VKIEDIH 1339

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
             +M VQGYVKN++ KGCFIMLSR L+AK+LLSNLSDGY+++PEKEFP GKLV GR+LSVE
Sbjct: 1340 AHMEVQGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEFPTGKLVRGRILSVE 1399

Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
            PLSKRVEVTLK+     A +   N+L +   GDI+ G+IKRVES+GLFI+I+NT++VGLC
Sbjct: 1400 PLSKRVEVTLKSVTETGALRGSNNDLRSFSAGDIISGRIKRVESFGLFISIDNTDVVGLC 1459

Query: 1364 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1423
            HVSE+S+D V+++E  Y AG+ VK K+LKVD+++ RI+LGMK SY   +   L  + EEE
Sbjct: 1460 HVSEVSDDPVESLEFRYHAGDTVKAKVLKVDEKRHRIALGMKRSYI-GERSELCTNMEEE 1518

Query: 1424 SDEAIEE---VGSYNRSSLLENSSVAVQDM-----DMESEDGGSLVLAQIESRASVPPLE 1475
             ++A +    +G    S   ++SS   +DM     ++E E    L LA  ESRA VP LE
Sbjct: 1519 HEDAADGDNFIGETRLSMDPDSSSTKFKDMDDDFDNIEPEQ--PLRLA--ESRALVPSLE 1574

Query: 1476 VNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA 1534
            V LDD ++ DM    S+N+  T    +  EKN+R  KKK KEERE E+RAAEERLL+ ++
Sbjct: 1575 VTLDDIDETDMVTLQSENKELTSGTDS-KEKNDRREKKKAKEEREMEVRAAEERLLQNNS 1633

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P T DEFE+LVRSSPNSSFVWIKYM F    ADVEKARSIAERAL+TINIREENEKLN+W
Sbjct: 1634 PTTVDEFEKLVRSSPNSSFVWIKYMDFF--KADVEKARSIAERALRTINIREENEKLNVW 1691

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            +AYFNLENEYGNP E+AV K+FQRALQ  DPKKVHLALLG+YERT Q+ LADELL KMIK
Sbjct: 1692 LAYFNLENEYGNPKEDAVTKIFQRALQCNDPKKVHLALLGMYERTNQDNLADELLDKMIK 1751

Query: 1655 KFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1714
            +FKHSCKVWLRR++ L K++Q  +Q++V RALL LP+ KHIK+ISQTAILEFK GVADRG
Sbjct: 1752 RFKHSCKVWLRRMESLFKKKQVEIQSIVNRALLCLPKRKHIKYISQTAILEFKCGVADRG 1811

Query: 1715 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1774
            RSMFEGIL EYPKRTDLWSIYLDQEIRLGD D+IR LFERAISLSL PKKMKFLFKKYLE
Sbjct: 1812 RSMFEGILREYPKRTDLWSIYLDQEIRLGDKDMIRALFERAISLSLAPKKMKFLFKKYLE 1871

Query: 1775 YEKSVGEEERIEYVKQKAMEYVESTLA 1801
            YEKSVG+EERIE VKQKA+EYVE+TLA
Sbjct: 1872 YEKSVGDEERIESVKQKALEYVENTLA 1898


>gi|240255326|ref|NP_187803.4| RNA binding protein [Arabidopsis thaliana]
 gi|332641610|gb|AEE75131.1| RNA binding protein [Arabidopsis thaliana]
          Length = 1896

 Score = 2238 bits (5799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1144/1820 (62%), Positives = 1417/1820 (77%), Gaps = 71/1820 (3%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MKL GVV EVN+KD+VI LPGGLRGL RA++  D   D  IE +E+ LL  IF VGQLV 
Sbjct: 129  MKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVP 187

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
            CIVL+LDDDKKE GKRKIWLSLRLSLL+KG S ++ Q GMV +A VKSIEDHG ILHFGL
Sbjct: 188  CIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGL 247

Query: 121  PSFTGFLP-RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG 179
            PS TGF+   ++  + SG+  K G L+QGVV  IDR RK+V+LSSDPD+V+KC+TKDL G
Sbjct: 248  PSITGFIEISDDGNQESGM--KTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSG 305

Query: 180  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 239
            +S DLL+PGMMV+ RVQS+LENG++  FLTYF GTVD+FHL+N     +WK++YNQ+K V
Sbjct: 306  MSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTV 365

Query: 240  NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 299
            NARILF+DP+SRAVGLTL+P+++ N+APP HV  GDI+D++KVVR+D+  GLLL++PS P
Sbjct: 366  NARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKP 424

Query: 300  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 359
              TPAYV+               +KEG+ +RVR+LG + +EGLA G LK SAFEG VFTH
Sbjct: 425  TPTPAYVS---------------FKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTH 469

Query: 360  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
            SDVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRV
Sbjct: 470  SDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRV 529

Query: 420  LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
            LG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF 
Sbjct: 530  LGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFV 589

Query: 480  PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLV 539
            PR ELGL+PG +P S++HVG+VVKCR+ S++  ++RI L           +D +KLGS+V
Sbjct: 590  PRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITL-----------NDSIKLGSIV 638

Query: 540  SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 599
            SG++D +T  AV+V V +K   KGTI  EHLADH E A ++ S+++PGYE D+LLVLD E
Sbjct: 639  SGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIE 698

Query: 600  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
             +N+ LS+KYSLI  A++LPSD + + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSK
Sbjct: 699  GNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSK 758

Query: 660  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 719
            A+D  +AD+S++++VGQSVR+NI+DVN E  RITLSLKQS C+S DASF+QE+FL++EKI
Sbjct: 759  AIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKI 818

Query: 720  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 779
            + LQSS    S+  WVE F IGS+I+G + E ND GVVV+F+  ++V GFI  H + GAT
Sbjct: 819  SDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGAT 878

Query: 780  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 839
            +  GSV+ A +LD+++AERLVDLSL+   ++   +  SN  + KKKRKR  SK+L VHQ 
Sbjct: 879  LVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQR 936

Query: 840  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 899
            V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF  GQSV+A+V A+ +  T
Sbjct: 937  VSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLT 996

Query: 900  AGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 958
            +GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AEITEIKP ELR+ FG  F GRIH
Sbjct: 997  SGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAEITEIKPFELRVNFGNSFRGRIH 1056

Query: 959  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIG 1017
            ITEV  + ++  +  F+ F++GQ+++AR++AK    D+KK+ LWELS+KP+ML   SE  
Sbjct: 1057 ITEVLVNDASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN 1116

Query: 1018 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1077
                 E+ + + GQ V GYVYKVD EW  L +SR++ A++FILD++ +  EL+EF+RRF 
Sbjct: 1117 DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP 1176

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQTFIHEG 1126
            IGKAV+G+VL+ NKEKK LRLV RP         +G   KT      I  D+   FIHEG
Sbjct: 1177 IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG 1236

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            DI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ +  V DPL G+ EGQ          
Sbjct: 1237 DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQ---------- 1286

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSP 1244
             FVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL  + D   K  E+IEDLSP
Sbjct: 1287 -FVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSP 1344

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
            +M VQGYVKN  SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEP
Sbjct: 1345 DMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEP 1404

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
            LSKR+EVTLKT ++    +SE  +L  LHVGD++ G+I+RVE +GLFI I+ T +VGLCH
Sbjct: 1405 LSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCH 1464

Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEE 1423
            +S+LS+D ++N++  Y+AGE V+ KILK+D+EK+RISLGMKSSY  N D D  Q  SE+ 
Sbjct: 1465 ISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDN 1524

Query: 1424 SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-E 1481
            +    + +       L      AV D   +   GG SLVLAQ+ESRAS+PPLEV+LDD E
Sbjct: 1525 TSMECDPINDPKSEVL-----AAVDDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIE 1579

Query: 1482 QPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEF 1541
            + D D+  SQNQ     A   DEK+ R  K+K+KEERE++I+AAE RLLE  AP   DEF
Sbjct: 1580 ETDFDS--SQNQEKLLGANK-DEKSKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEF 1636

Query: 1542 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1601
            E+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLE
Sbjct: 1637 EKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLE 1696

Query: 1602 NEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK 1661
            NE+GNPPEE+V KVF+RA QYCDPKKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK
Sbjct: 1697 NEHGNPPEESVKKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCK 1756

Query: 1662 VWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1721
            +WLR++Q  LKQ +E +Q+VV RALL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+
Sbjct: 1757 IWLRKIQSSLKQNEEAIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGV 1816

Query: 1722 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1781
            L EYPKRTDLWS+YLDQEIRLG+ D+IR LFERAISLSLPPKKMKFLFKK+LEYEKSVG+
Sbjct: 1817 LREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGD 1876

Query: 1782 EERIEYVKQKAMEYVESTLA 1801
            EER+EYVKQ+AMEY  STLA
Sbjct: 1877 EERVEYVKQRAMEYANSTLA 1896


>gi|10998136|dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis thaliana]
          Length = 1765

 Score = 2231 bits (5782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1144/1820 (62%), Positives = 1416/1820 (77%), Gaps = 74/1820 (4%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MKL GVV EVN+KD+VI LPGGLRGL RA++  D   D  IE +E+ LL  IF VGQLV 
Sbjct: 1    MKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVP 59

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
            CIVL+LDDDKKE GKRKIWLSLRLSLL+KG S ++ Q GMV +A VKSIEDHG ILHFGL
Sbjct: 60   CIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGL 119

Query: 121  PSFTGFLP-RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG 179
            PS TGF+   ++  + SG+  K G L+QGVV  IDR RK+V+LSSDPD+V+KC+TKDL G
Sbjct: 120  PSITGFIEISDDGNQESGM--KTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSG 177

Query: 180  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 239
            +S DLL+PGMMV+ RVQS+LENG++  FLTYF GTVD+FHL+N     +WK++YNQ+K V
Sbjct: 178  MSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTV 237

Query: 240  NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 299
            NARILF+DP+SRAVGLTL+P+++ N+APP HV  GDI+D++KVVR+D+  GLLL++PS P
Sbjct: 238  NARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKP 296

Query: 300  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 359
              TPAY    D A +EV KLEKK+KEG+ +RVR+LG + +EGLA G LK SAFEG VFTH
Sbjct: 297  TPTPAYTY--DAAGDEVTKLEKKFKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTH 354

Query: 360  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
            SDVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRV
Sbjct: 355  SDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRV 414

Query: 420  LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
            LG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF 
Sbjct: 415  LGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFV 474

Query: 480  PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLV 539
            PR ELGL+PG +P S++HVG+VVKCR+ S++  ++RI LSFM+KP+ VSEDD +KLGS+V
Sbjct: 475  PRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSEDDSIKLGSIV 534

Query: 540  SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 599
            SG++D +T  AV+V V +K   KGTI  EHLADH E A ++ S+++PGYE D+LLVLD E
Sbjct: 535  SGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIE 594

Query: 600  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
             +N+ LS+KYSLI  A++LPSD + + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSK
Sbjct: 595  GNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSK 654

Query: 660  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 719
            A+D  +AD+S++++VGQSVR+NI+DVN E  RITLSLKQS C+S DASF+QE+FL++EKI
Sbjct: 655  AIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKI 714

Query: 720  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 779
            + LQSS    S+  WVE F IGS+I+G + E ND GVVV+F+  ++V GFI  H + GAT
Sbjct: 715  SDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGAT 774

Query: 780  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 839
            +  GSV+ A +LD+++AERLVDLSL+   ++   +  SN  + KKKRKR  SK+L VHQ 
Sbjct: 775  LVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQR 832

Query: 840  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 899
            V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF  GQSV+A+V A+ +  T
Sbjct: 833  VSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLT 892

Query: 900  AGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 958
            +GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AE                      
Sbjct: 893  SGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAE---------------------- 930

Query: 959  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIG 1017
               VND  ++  +  F+ F++GQ+++AR++AK    D+KK+ LWELS+KP+ML   SE  
Sbjct: 931  ---VND--ASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN 985

Query: 1018 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1077
                 E+ + + GQ V GYVYKVD EW  L +SR++ A++FILD++ +  EL+EF+RRF 
Sbjct: 986  DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP 1045

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQTFIHEG 1126
            IGKAV+G+VL+ NKEKK LRLV RP         +G   KT      I  D+   FIHEG
Sbjct: 1046 IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG 1105

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            DI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ +  V DPL G+ EGQ          
Sbjct: 1106 DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQ---------- 1155

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSP 1244
             FVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL  + D   K  E+IEDLSP
Sbjct: 1156 -FVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSP 1213

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
            +M VQGYVKN  SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEP
Sbjct: 1214 DMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEP 1273

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
            LSKR+EVTLKT ++    +SE  +L  LHVGD++ G+I+RVE +GLFI I+ T +VGLCH
Sbjct: 1274 LSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCH 1333

Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEE 1423
            +S+LS+D ++N++  Y+AGE V+ KILK+D+EK+RISLGMKSSY  N D D  Q  SE+ 
Sbjct: 1334 ISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDN 1393

Query: 1424 SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-E 1481
            +    + +       L      AV D   +   GG SLVLAQ+ESRAS+PPLEV+LDD E
Sbjct: 1394 TSMECDPINDPKSEVL-----AAVDDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIE 1448

Query: 1482 QPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEF 1541
            + D D+  SQNQ     A   DEK+ R  K+K+KEERE++I+AAE RLLE  AP   DEF
Sbjct: 1449 ETDFDS--SQNQEKLLGANK-DEKSKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEF 1505

Query: 1542 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1601
            E+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLE
Sbjct: 1506 EKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLE 1565

Query: 1602 NEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK 1661
            NE+GNPPEE+V KVF+RA QYCDPKKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK
Sbjct: 1566 NEHGNPPEESVKKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCK 1625

Query: 1662 VWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1721
            +WLR++Q  LKQ +E +Q+VV RALL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+
Sbjct: 1626 IWLRKIQSSLKQNEEAIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGV 1685

Query: 1722 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1781
            L EYPKRTDLWS+YLDQEIRLG+ D+IR LFERAISLSLPPKKMKFLFKK+LEYEKSVG+
Sbjct: 1686 LREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGD 1745

Query: 1782 EERIEYVKQKAMEYVESTLA 1801
            EER+EYVKQ+AMEY  STLA
Sbjct: 1746 EERVEYVKQRAMEYANSTLA 1765


>gi|297833988|ref|XP_002884876.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330716|gb|EFH61135.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1843

 Score = 2128 bits (5513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1090/1725 (63%), Positives = 1347/1725 (78%), Gaps = 74/1725 (4%)

Query: 101  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 160
            V +A VKS+EDHGYILHFGLPS +GF+  +N      + +K G L+QGVV  IDR RKVV
Sbjct: 169  VFSANVKSVEDHGYILHFGLPSISGFIEISNDGNQESV-MKTGQLIQGVVTKIDRDRKVV 227

Query: 161  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 220
            +LSSDPD+V+KC+TKDL G+S DLL+PGMMV+ RVQS+LENG++  FLTYF GTVD+FHL
Sbjct: 228  HLSSDPDSVAKCLTKDLNGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHL 287

Query: 221  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 280
            +N     +WK++YNQ+K VNARILF+DP+SRAVGLTLNP+L+ N+APP HV  GDI+D++
Sbjct: 288  KNPLSNKSWKDEYNQNKMVNARILFIDPSSRAVGLTLNPHLVCNKAPPLHVFSGDIFDEA 347

Query: 281  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 340
            KVVR+D+  GLLL++PS PV  PAY++               +KEG+ +RVRILG + +E
Sbjct: 348  KVVRIDKS-GLLLELPSKPVPNPAYIS---------------FKEGNHIRVRILGLKQME 391

Query: 341  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
            GLA G LK SAFEG VFTHSDV+PGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEF
Sbjct: 392  GLAIGTLKESAFEGPVFTHSDVRPGMVTKAKVISVDTFGAIVQFAGGLKAMCPLRHMSEF 451

Query: 401  EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
            E++KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWIT
Sbjct: 452  EVMKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWIT 511

Query: 461  KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
            KIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VVKCR+ S++  SRRI L  
Sbjct: 512  KIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGSRRITL-- 569

Query: 521  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 580
                     +D +KLGS+VSG+VD +T  AV+V V +KG  KGTI TEHLADH + A +M
Sbjct: 570  ---------NDSIKLGSIVSGIVDSITSQAVIVRVKSKGVLKGTISTEHLADHHDQAKLM 620

Query: 581  KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 640
             S+++PGYE D+LLVLD E +NL LS+KYSLI  A++LPSD + + PNSVVHGYVCN+IE
Sbjct: 621  MSLLRPGYELDKLLVLDIEGNNLSLSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIE 680

Query: 641  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
             GCFVRFLGRLTGFAPRSKA+D  RADLS++++VGQSVR+NI+DVN E  RITLSLKQS 
Sbjct: 681  NGCFVRFLGRLTGFAPRSKAIDDPRADLSESFFVGQSVRANIVDVNQEKSRITLSLKQSS 740

Query: 701  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
            C+S DASF+QE+FL++EKI+ LQSS    SE  WVE F IGS+I+G + E ND GVVV+F
Sbjct: 741  CASVDASFVQEYFLMDEKISDLQSSDITKSEYSWVEKFSIGSLIKGTLQEQNDLGVVVNF 800

Query: 761  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 820
            +  ++V GFI  H + GAT+  GSV+ A +LD+++AERLVDLSL+   I+   +  SN Q
Sbjct: 801  DNINNVLGFIPQHHMGGATMVPGSVVNAVVLDISRAERLVDLSLRPELINNLTKEVSNSQ 860

Query: 821  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 880
              KKKRKR  SK+L VHQ V+A+VEIVKE +LVLS+PE+ +++GYAS+SDYNTQK P KQ
Sbjct: 861  L-KKKRKRGISKELEVHQRVSAVVEIVKEQHLVLSIPEHGYTVGYASLSDYNTQKLPVKQ 919

Query: 881  FLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITE 939
            F  GQSV+A+V A+ +  T+GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AEITE
Sbjct: 920  FSTGQSVVASVEAVQNPLTSGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAEITE 979

Query: 940  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 999
            IKP ELR+ FG  F GRIHITEVND  ++  +  F+ F++GQ+++AR+++K    D+KKS
Sbjct: 980  IKPFELRVNFGNSFRGRIHITEVND--ASTSDEPFAKFRVGQSMSARVVSKPCHTDIKKS 1037

Query: 1000 FLWELSIKPSML-TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1058
             LWELS+KP+ML   SE+      E+ +   GQ V GYVYKVD EW  L ISR++ A++F
Sbjct: 1038 QLWELSVKPAMLRDSSELNDIQESEQLEFVAGQCVNGYVYKVDKEWVWLAISRNVTARIF 1097

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD-------GISDKT 1111
            ILD+A E  EL+EF+R F IGKAV+G+VL+ NKEK+ LRLV RP  D       G   KT
Sbjct: 1098 ILDTACEAHELEEFERHFPIGKAVSGYVLTYNKEKRTLRLVQRPLLDIHKSIANGGGSKT 1157

Query: 1112 ----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1167
                + I  D+   FIHEGDI+GGRISKIL GVGGL VQIGP+++GRVHFTE+ ++ V +
Sbjct: 1158 DKLDISIPGDDGTLFIHEGDILGGRISKILPGVGGLRVQIGPYVFGRVHFTEINDLWVPN 1217

Query: 1168 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDL 1225
            PL G+ EGQ           FVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL
Sbjct: 1218 PLDGFREGQ-----------FVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHISEDL 1266

Query: 1226 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1285
            + + D   K  E+ EDLS +M VQGYVKN  SKGCFI+LSRK++AKV LSNL D +V+ P
Sbjct: 1267 NNN-DNVCKRFERFEDLSLDMGVQGYVKNTMSKGCFIILSRKVEAKVKLSNLCDTFVKEP 1325

Query: 1286 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1345
            EKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++    +SE  ++  LHVGD++ G+IKRV
Sbjct: 1326 EKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGQPKSESYDMKKLHVGDMISGRIKRV 1385

Query: 1346 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            E YGLFI I+   +VGLCH+++LS+D ++N++  Y+AGE V  KILK+D+EKRRISLGMK
Sbjct: 1386 EPYGLFIDIDQIGMVGLCHITQLSDDRIENVQARYKAGESVSAKILKLDEEKRRISLGMK 1445

Query: 1406 SSYFKNDAD-NLQMSSEEESDEAIEEVGSYNRSSLLENSSV--AVQDMDMESEDGG---- 1458
            SSY  N  D   Q  SEE++DE   E    N      N+ V  AV D   +   GG    
Sbjct: 1446 SSYLMNGDDVKAQPPSEEKADETSMECDPINDP----NTEVLAAVGDFGFQETSGGRHSG 1501

Query: 1459 -SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKE 1516
             SLVLAQ++SRAS+PPLEV+LDD E+ D DN  +QNQ     A   DEK+ R  K+K+KE
Sbjct: 1502 ASLVLAQVDSRASIPPLEVDLDDIEEMDFDN--NQNQEKLLGADK-DEKSKRREKQKDKE 1558

Query: 1517 EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1576
            ERE++I+AAE RLLE  AP + DEFE+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAE
Sbjct: 1559 EREKKIQAAEGRLLEHHAPESADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAE 1618

Query: 1577 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1636
            RAL+TINIREE EKLNIWVAYFNLENE+G+PPEEAV KVF+RA QYCDPKKV+LALLG+Y
Sbjct: 1619 RALRTINIREEEEKLNIWVAYFNLENEHGSPPEEAVKKVFERARQYCDPKKVYLALLGVY 1678

Query: 1637 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIK 1696
            ERTEQ KL D+LL +M+KKFK SCK+WLR++Q  L+Q +EG+Q+VV RALL LPRHKHIK
Sbjct: 1679 ERTEQYKLVDKLLDEMVKKFKQSCKIWLRKIQSSLQQNEEGIQSVVNRALLCLPRHKHIK 1738

Query: 1697 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1756
            FISQTAILEFK GVADRGRS+FEG+L EYPKRTDLWS+YLDQEIRLG+VD+IR LFERAI
Sbjct: 1739 FISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEVDVIRSLFERAI 1798

Query: 1757 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            SLSLPPKKMKFLFKK+LEYE+SVGEEER EYVKQ+A+EY +STLA
Sbjct: 1799 SLSLPPKKMKFLFKKFLEYERSVGEEERAEYVKQRALEYAKSTLA 1843



 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 115/474 (24%), Positives = 195/474 (41%), Gaps = 75/474 (15%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALD-------------------------- 34
           MKL GVV EVN+KD+VI LPGGLRGL RA++A D                          
Sbjct: 128 MKLLGVVIEVNQKDIVISLPGGLRGLVRASEASDFTDLGIEVFSANVKSVEDHGYILHFG 187

Query: 35  -PILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKK--EIGKRKIWLSLRLSLLYKGL 91
            P +   IE + D    ++   GQL+  +V ++D D+K   +      ++  L+    G+
Sbjct: 188 LPSISGFIEISNDGNQESVMKTGQLIQGVVTKIDRDRKVVHLSSDPDSVAKCLTKDLNGM 247

Query: 92  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG----FLPRNNLAENSGID-VKPGLLL 146
           S + +  GM++ A V+S+ ++G +  F L  F G    F  +N L+  S  D      ++
Sbjct: 248 SFDLLIPGMMVNARVQSVLENGILFDF-LTYFNGTVDLFHLKNPLSNKSWKDEYNQNKMV 306

Query: 147 QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 206
              +  ID + + V L+ +P  V        K   + +    +    +V  I ++G++L 
Sbjct: 307 NARILFIDPSSRAVGLTLNPHLVCN------KAPPLHVFSGDIFDEAKVVRIDKSGLLLE 360

Query: 207 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL------NPY 260
             +               P   + + + +   +  RIL +         TL       P 
Sbjct: 361 LPS------------KPVPNPAYIS-FKEGNHIRVRILGLKQMEGLAIGTLKESAFEGPV 407

Query: 261 LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 320
             H+   P  V       ++KV+ VD   G ++          A   +  ++E EV K  
Sbjct: 408 FTHSDVRPGMVT------KAKVISVDT-FGAIVQFAG---GLKAMCPLRHMSEFEVMKPR 457

Query: 321 KKYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 378
           KK+K G+ +  R+LG +      T    L  S    ++ +++D   G+V  G +  ++  
Sbjct: 458 KKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLP-ILSSYTDATEGLVTHGWITKIEKH 516

Query: 379 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 430
           G  V+F  GV+   P   +       P   F VG  +  RV      S+RIT+ 
Sbjct: 517 GCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGSRRITLN 570


>gi|222636634|gb|EEE66766.1| hypothetical protein OsJ_23484 [Oryza sativa Japonica Group]
          Length = 1898

 Score = 1955 bits (5064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1018/1811 (56%), Positives = 1334/1811 (73%), Gaps = 63/1811 (3%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MKLWGVV EVN+KD+V+ LPGG+RG  R+ +  D       + +E ++   + HVGQLV 
Sbjct: 141  MKLWGVVIEVNQKDIVVSLPGGMRGFVRSEEVHDITSQETRKDSEGSICADVVHVGQLVP 200

Query: 61   CIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF 118
            CIVL++DDD KE GK  +++WLSLRLS +YKGLSL+ +Q+GMVLTA VKSIEDHGYILHF
Sbjct: 201  CIVLRVDDDNKE-GKVNKRVWLSLRLSRIYKGLSLDAIQDGMVLTAQVKSIEDHGYILHF 259

Query: 119  GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK 178
            G+ SF+GF+P+   A+     ++ G L+Q VV++ID+ R++V+LSSD D +SK + KDLK
Sbjct: 260  GVSSFSGFMPK---ADRESAKIESGQLIQCVVKAIDKAREIVHLSSDEDLLSKSIIKDLK 316

Query: 179  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 238
            G+SID L+PGMMV+ RV S+LENGVMLSFLTYFTGT DIF+L N+FP+ +WK+DY ++KK
Sbjct: 317  GLSIDHLIPGMMVNARVHSVLENGVMLSFLTYFTGTADIFNLSNSFPSGSWKDDYIKNKK 376

Query: 239  VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 298
            VNARILFVDP++RAVGLTLN  LL  + P  +VK G+IYD+++V+R+D+  GL L+IPS 
Sbjct: 377  VNARILFVDPSTRAVGLTLNQQLLRLKVPSINVKAGEIYDKARVLRMDKRAGLFLEIPS- 435

Query: 299  PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 358
            P  +P +V+I DV++++V+ +EKK+KEGS  RVR+LG RHLEG+A G LK SAFEG VFT
Sbjct: 436  PTPSPGFVSIHDVSDKDVKNVEKKFKEGSMARVRVLGVRHLEGVAIGTLKESAFEGSVFT 495

Query: 359  HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-IVKPGKKFKVGAELVF 417
            H+DVKPGMVV+ KV+ V+ FGAIVQF  GVKALCPLPHMSE E +VKP KKFKVG EL F
Sbjct: 496  HADVKPGMVVRAKVVTVEPFGAIVQFSSGVKALCPLPHMSELEHVVKPPKKFKVGVELTF 555

Query: 418  RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
            RVLG KSKRITVT KK+LVKSKL +L+SYA+A   L+THGWITKIEKHGCFV+FYNGVQG
Sbjct: 556  RVLGCKSKRITVTFKKSLVKSKLDVLASYADAKIGLLTHGWITKIEKHGCFVKFYNGVQG 615

Query: 478  FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGS 537
            F  RSELGL+PG E  ++YHVGQVVKCR++S +PASR+IN++F++   RV + D  K+GS
Sbjct: 616  FVSRSELGLEPGTEAENVYHVGQVVKCRVVSVVPASRKINVTFLISTNRVIQADTPKVGS 675

Query: 538  LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 597
            +VSGVV+ +TP AVVV V   G+ KG+I  EHLADH   A  +K+++KPG+EF +LLVLD
Sbjct: 676  IVSGVVERLTPAAVVVSV--NGFCKGSILNEHLADHRGQAAQLKNLLKPGHEFSELLVLD 733

Query: 598  NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
             E  NL+LSAK SLIN A  +PS+ S +H  SV HGYVCNIIE GCFVRFLG LTGF+P+
Sbjct: 734  VEGQNLVLSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFVRFLGHLTGFSPK 793

Query: 658  SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 717
             KAVD     LS  +YVGQSVRS+IL+VN+E+ R+ LSL+QS CSS D SF+Q +FLL++
Sbjct: 794  DKAVDRSVEKLSNAFYVGQSVRSHILNVNAESARVKLSLQQSMCSSADCSFVQGYFLLDQ 853

Query: 718  KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 777
            KI  L+ S  + S   W+  F IG+++EG+V    ++GV+++F+ H DV G I HHQL  
Sbjct: 854  KITELKYSDPSSSFHDWLNTFAIGNLVEGEVGAIEEYGVILNFQSHPDVVGLIEHHQLGD 913

Query: 778  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
            ++VE GS ++  ++D++    +V++SLK+  +      + ++  +KKKR R A  DL +H
Sbjct: 914  SSVEVGSSVKGLVIDLSDG--VVNISLKSELV-----RSVSKVGKKKKRHRAAVMDLELH 966

Query: 838  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSS 897
            + VNAIVEIVKE+++VLS+PEYN++IG+A + DYN+Q  P   + NGQ +   V ++PSS
Sbjct: 967  EEVNAIVEIVKESHVVLSIPEYNYAIGFAPLMDYNSQLLPCCNYENGQRITVVVGSMPSS 1026

Query: 898  STAGRLLLLLKAISETETSSSKRAKKKS-SYDVGSLVQAEITEIKPLELRLKFGIGFHGR 956
               GRLLLL KA  +  + SS +  KK   + VGSLV+AEI +IKPLEL LKFG   HGR
Sbjct: 1027 GPTGRLLLLPKASGKNSSVSSSKRAKKKSDFKVGSLVEAEIIDIKPLELLLKFGSNLHGR 1086

Query: 957  IHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLTVSE 1015
            IHITEV DD SN  +  FS  +IG++V ARI+A++       K+  WELSI+PS+L    
Sbjct: 1087 IHITEVFDDDSN--DCPFSELQIGRSVQARIVAEAEHSGKGGKNSKWELSIRPSLLQGGL 1144

Query: 1016 IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR 1075
                    E   SIG  V  YV KVD EW  LT+SR + A LFILDS+ EP EL++FQ+R
Sbjct: 1145 EDFTPPKAELRHSIGGIVHAYVVKVDREWIWLTVSRDVMAHLFILDSSAEPGELEKFQQR 1204

Query: 1076 FHIGKAVTGHVLSINKEKKLLRLVL---RPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1132
            + +G+AV G ++ +N+EK+LLRL     +   + I +    +S     T   +GDI+GGR
Sbjct: 1205 YSVGQAVKGRIIGVNREKRLLRLKALDSQSLPENIGETQKPLSATVEHT--KQGDIIGGR 1262

Query: 1133 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1192
            I KIL GVGGLV+QIGPHL+GRVH+TE+ +  V +P+SG+ EGQ           FVKCK
Sbjct: 1263 IQKILPGVGGLVIQIGPHLHGRVHYTEIVDSWVQEPISGFHEGQ-----------FVKCK 1311

Query: 1193 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1252
            VL++SR+  G+  V+LSLRSS+   +S  S  L  D        EKI DL P   V+GYV
Sbjct: 1312 VLDVSRSSEGSVRVDLSLRSSM-CANSNQSRRLFDDSRIRTSRFEKINDLCPGTEVKGYV 1370

Query: 1253 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1312
            K+V SKGCFIM+SR ++A+++LSNLSD YVE+P+ +FP+G LV GRVLS EP S +VEV+
Sbjct: 1371 KSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQNDFPVGLLVHGRVLSSEPQSGKVEVS 1430

Query: 1313 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
            L+ +    + +S+  + S+LHVGDI+ GQ+KRVES+GLF+TI+ + LV LCHVSELS++ 
Sbjct: 1431 LRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVTIQGSELVALCHVSELSDEP 1490

Query: 1373 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVG 1432
            V +I + ++AG+K+       D+E+ R+S+GMK SY   D+     +S++E DE + E  
Sbjct: 1491 VLDIHSCHKAGDKI-------DEERHRVSIGMKKSYIGPDSTG--DTSDDEDDEIVPEEI 1541

Query: 1433 SYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN 1492
            S N                M  +   +LVL + ESRASV PL+V+LD+ +       ++ 
Sbjct: 1542 SRNPV--------------MGRDRNHALVLPKPESRASVLPLQVSLDESEGSDQENDNKG 1587

Query: 1493 QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSS 1552
            Q   +  +  D+K+N+  K+K +++RE EI A EER L++D P+TPDEFE+LVRSSPNSS
Sbjct: 1588 QEIANGTEVDDKKSNKRLKEKARKQRELEISALEERALQRDIPQTPDEFEKLVRSSPNSS 1647

Query: 1553 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1612
            FVWI YMAF+L +ADV+KAR++AERAL+TINIREE EKLN+WVAYFNLENEYG+P E+AV
Sbjct: 1648 FVWINYMAFLLDLADVDKARAVAERALRTINIREEEEKLNVWVAYFNLENEYGSPREDAV 1707

Query: 1613 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1672
             K+FQRALQYCDPKKVHLALL +YERTEQ  LADELL +M K+FK SCK+WLR +Q  LK
Sbjct: 1708 KKIFQRALQYCDPKKVHLALLAMYERTEQYTLADELLDRMTKRFKTSCKIWLRCIQLSLK 1767

Query: 1673 QQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1730
            Q +  E ++ +V+RALLSLP+ K  KF+SQTAILEFK GV + GRS FE IL EYPKRTD
Sbjct: 1768 QSKDVECIKLIVKRALLSLPQSKRRKFLSQTAILEFKCGVPEEGRSRFELILREYPKRTD 1827

Query: 1731 LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1790
            LWS+YLDQEIRLGD ++IR LFER   LSLPPKKMKFLFKKYLEYEKS G+EERIE+VKQ
Sbjct: 1828 LWSVYLDQEIRLGDTEIIRALFERVTCLSLPPKKMKFLFKKYLEYEKSQGDEERIEHVKQ 1887

Query: 1791 KAMEYVESTLA 1801
            KA+EYV+S+LA
Sbjct: 1888 KALEYVQSSLA 1898


>gi|242043296|ref|XP_002459519.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
 gi|241922896|gb|EER96040.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
          Length = 1862

 Score = 1933 bits (5007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1012/1813 (55%), Positives = 1326/1813 (73%), Gaps = 115/1813 (6%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MKLWGVV EVN+KD+V+ LPGG+RG  R+ D  D  L    + +E++L   + HVGQLV 
Sbjct: 146  MKLWGVVIEVNQKDIVLSLPGGIRGFVRSEDVCDIALQENRKDSENSLCAKVVHVGQLVP 205

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
            CIVL++DDDKKE                          G VL A VKSIEDHGYILHFG+
Sbjct: 206  CIVLRVDDDKKE--------------------------GKVLAAQVKSIEDHGYILHFGV 239

Query: 121  PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 180
             SF+GF+ +++  EN  I+ +   L+  VV++ID+TR +V+LSSD D + K + KDLKG+
Sbjct: 240  SSFSGFMQKDD-KENVKIERRQ--LMHCVVKAIDKTRAIVHLSSDEDLLCKSIIKDLKGL 296

Query: 181  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
            SID L+PGMMV+ RV S+LENGVMLSFLTYF+GTVDIF+L N+FP+ NWK+DY+++KKVN
Sbjct: 297  SIDHLIPGMMVNARVHSVLENGVMLSFLTYFSGTVDIFNLLNSFPSGNWKDDYSKNKKVN 356

Query: 241  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
            ARILFVDP++RAVGLTLN +LLH   PP ++K GDIYD+SKV+RVD+  GL L+IPS P 
Sbjct: 357  ARILFVDPSTRAVGLTLNKHLLHLEVPPINLKAGDIYDKSKVLRVDKKAGLFLEIPS-PT 415

Query: 301  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 360
             +P +++I DV++++ + LEK +KEGS +RVRILG R+LEG+A G +K SAFEG VFTH 
Sbjct: 416  PSPGFISIHDVSDKDAKNLEK-FKEGSSLRVRILGVRNLEGVAIGTVKDSAFEGSVFTHD 474

Query: 361  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-IVKPGKKFKVGAELVFRV 419
            DVKPGM+V+ KV  V+ FGAIVQF  GVKALCPLPHMSE E +VKP KKFKVGAEL+FRV
Sbjct: 475  DVKPGMLVRAKVATVEPFGAIVQFSSGVKALCPLPHMSELEHVVKPPKKFKVGAELLFRV 534

Query: 420  LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
            LG KSKR+TVT+KK+LVKSKL +L+SYA+A   L+THGWITKIEKHGCFV+FYNGVQGF 
Sbjct: 535  LGCKSKRVTVTYKKSLVKSKLDVLASYADAKIGLVTHGWITKIEKHGCFVKFYNGVQGFV 594

Query: 480  PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLV 539
             RS+LGL+ G E  ++YHVGQVVKCRI++ IPASR++N+SF++   RV   D  KLGS+V
Sbjct: 595  SRSDLGLEAGTEAENVYHVGQVVKCRIINVIPASRKLNVSFVISHNRVIPIDTPKLGSIV 654

Query: 540  SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 599
            SGVV+ +TP AVVV V   G+SKGTI  EHLADH                       D E
Sbjct: 655  SGVVERLTPAAVVVSV--NGFSKGTILNEHLADHH----------------------DIE 690

Query: 600  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
              NL+LSAK+SLIN A  +PS+ S +HP  VVHGY+CNIIE+GCFVRFLG LTGF+P+ K
Sbjct: 691  GHNLVLSAKHSLINCANDIPSEISQMHPGVVVHGYICNIIESGCFVRFLGHLTGFSPKDK 750

Query: 660  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 719
            AVD +   LS  +YVGQSVRS+IL V +ET R+ LSL+QS CSSTD+SF+Q +FLL++KI
Sbjct: 751  AVDRRIERLSDAFYVGQSVRSHILSVTAETARVKLSLQQSMCSSTDSSFIQGYFLLDQKI 810

Query: 720  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 779
            A L+ S ++     W   F IGS++EG+V    ++G++++F++H DV G I HHQL G++
Sbjct: 811  AALKYSSND-----WAHTFGIGSLVEGEVGAIEEYGIILNFKDHLDVVGLIEHHQLGGSS 865

Query: 780  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 839
            VE GS ++  +LD++    +V+LSLK   I   R        +KKKR+R A  DL +H+ 
Sbjct: 866  VEVGSSVKGLVLDLSDG--VVNLSLKPELIGSVRNV-----GKKKKRQRAAVADLELHEE 918

Query: 840  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 899
            VNA+VEI+K +YLVLS+PEYN++IG+A + DYN+Q  P   + NGQ +   V  +PSS +
Sbjct: 919  VNAVVEIIKGSYLVLSIPEYNYAIGFAPLMDYNSQLLPHHHYDNGQRITVVVGNIPSSDS 978

Query: 900  AGRLLLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 958
            +GRL+LL KA ++ +  S SKRAKKKS Y +GSLV+AEI +IKPLEL L+FG   HGRIH
Sbjct: 979  SGRLILLPKASAQYSALSESKRAKKKSGYKIGSLVEAEIIDIKPLELLLQFGGNLHGRIH 1038

Query: 959  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK--KSFLWELSIKPSMLTVSEI 1016
            ITEV +  S+  E+ FS  +IGQ +TARI+A++ +P  K  K+F WELSI+P ++   E 
Sbjct: 1039 ITEVPEKDSD--EHPFSKLRIGQKLTARIVAEA-EPSGKSGKNFKWELSIRPCIVN-GEF 1094

Query: 1017 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1076
                  +E   +  + V  YV KVD EW  LT+SR++ A LF+LDS+ EPSEL+EFQ+RF
Sbjct: 1095 DELTAQKEQKHTTNEIVRAYVVKVDKEWVWLTVSRNVMAHLFVLDSSSEPSELKEFQQRF 1154

Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD-ISNDNMQTF--IHEGDIVGGRI 1133
              G+AV G V+++N+EK+LLRL  +   +  +   +D I       F    +GDI+GGR+
Sbjct: 1155 SEGQAVKGRVINVNREKRLLRL--KALDNQCTQLNIDEIQQSKSSVFEQTKQGDIIGGRV 1212

Query: 1134 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
             KIL GVGGLVVQIGPHL GRVH+TE+ +  V++PLSG+ EGQ           FVKCKV
Sbjct: 1213 QKILPGVGGLVVQIGPHLRGRVHYTEIVDSWVTEPLSGFHEGQ-----------FVKCKV 1261

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            L +SR+  G+  V+LSLRSS + +  +N+S L  D+ T    +EKI+DL P   ++GYVK
Sbjct: 1262 LSVSRSSEGSLRVDLSLRSS-NLIRDSNNSGLVDDLATCTSRIEKIKDLLPGTEIKGYVK 1320

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            NV SKGCFIM+SR ++A++ LSNLSD YVE+P+K+FP+G LV GRVLS +P S RVE +L
Sbjct: 1321 NVNSKGCFIMISRMVEARITLSNLSDEYVENPQKDFPVGMLVHGRVLSTDPSSGRVEASL 1380

Query: 1314 -KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
             KT+ S+     +I+  S+LHVGDI+ GQ+KRVES+GLF+TI  + LVGLCHVSELS++ 
Sbjct: 1381 RKTTGSKLEKLDDIS-YSDLHVGDIIDGQVKRVESFGLFVTIRRSELVGLCHVSELSDEP 1439

Query: 1373 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVG 1432
            V +I + Y+AG+ VK KILK+D+++ R+SLGMK SYF  D+D    ++++E DE      
Sbjct: 1440 VVDINSCYKAGDMVKAKILKIDEKRHRVSLGMKKSYF--DSDLTADTNDDEDDE------ 1491

Query: 1433 SYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDM-DNGIS 1490
                 S L + SVA Q ++  +    SLV  + E  ASVPPL+V+LD+ E  D+ DN  +
Sbjct: 1492 -----SALMDISVAPQMVEYHNR---SLVNRKAEPIASVPPLQVSLDESECSDLEDNNNN 1543

Query: 1491 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1550
            +     +  +   +KN++  KK+ +++RE EI A EER L+ D P+TPD+FE+LVRSSPN
Sbjct: 1544 KGPEIANGTEANAKKNDKQLKKEARKQRELEISAMEERALQGDVPQTPDDFEKLVRSSPN 1603

Query: 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610
            SSFVWIKYMA +L +ADVEKAR++AERAL+TI  REE EKLN+WVAYFNLENEYG+P E+
Sbjct: 1604 SSFVWIKYMATLLDLADVEKARAVAERALKTIIPREEEEKLNVWVAYFNLENEYGSPRED 1663

Query: 1611 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1670
            AV KVFQRALQYCDPKK+HLALL +YERTEQ +LADELL +M K+FK SCK+WL R+Q  
Sbjct: 1664 AVKKVFQRALQYCDPKKLHLALLAMYERTEQYELADELLDRMTKRFKTSCKIWLCRIQFA 1723

Query: 1671 LKQQQE--GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1728
            LKQ ++   ++++V RALLSLP  K IKF+SQTAILEFK GV + GRS FE IL EYPKR
Sbjct: 1724 LKQGKDVACIKSIVNRALLSLPHRKRIKFLSQTAILEFKCGVPEEGRSRFELILREYPKR 1783

Query: 1729 TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE-ERIEY 1787
            TDLWS+YLDQEIRLGD+++IR LFER   L+LPPKKM+FLFKKYL +EKS+GE+ ERI++
Sbjct: 1784 TDLWSVYLDQEIRLGDIEVIRALFERVTCLTLPPKKMQFLFKKYLNFEKSLGEDNERIQF 1843

Query: 1788 VKQKAMEYVESTL 1800
            V+QKA+EYV+S+L
Sbjct: 1844 VQQKAIEYVQSSL 1856


>gi|218199275|gb|EEC81702.1| hypothetical protein OsI_25303 [Oryza sativa Indica Group]
          Length = 1848

 Score = 1865 bits (4831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 988/1811 (54%), Positives = 1296/1811 (71%), Gaps = 113/1811 (6%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MKLWGVV EVN+KD+V+ LPGG+RG  R+ +  D       + +E ++   + HVGQLV 
Sbjct: 141  MKLWGVVIEVNQKDIVVSLPGGMRGFVRSEEVHDITSQETRKDSEGSICADVVHVGQLVP 200

Query: 61   CIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF 118
            CIVL++DDD KE GK  +++WLSLRLS +YKGLSL+ +Q+GMVLTA VKSIEDHGYILHF
Sbjct: 201  CIVLRVDDDNKE-GKVNKRVWLSLRLSRIYKGLSLDAIQDGMVLTAQVKSIEDHGYILHF 259

Query: 119  GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK 178
            G+ SF+GF+P+   A+     ++ G L+Q VV++ID+ R++V+LSSD D +SK + KDLK
Sbjct: 260  GVSSFSGFMPK---ADRESAKIESGQLIQCVVKAIDKAREIVHLSSDEDLLSKSIIKDLK 316

Query: 179  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 238
            G+SID L+PGMMV+ RV S+LENGVMLSFLTYFTGT DIF+L N+FP+ +WK+DY ++KK
Sbjct: 317  GLSIDHLIPGMMVNARVHSVLENGVMLSFLTYFTGTADIFNLSNSFPSGSWKDDYIKNKK 376

Query: 239  VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 298
            VNARILFVDP++RAVGLTLN  LL  + P  +VK G+IYD+++V+R+D+  GL L+IPS 
Sbjct: 377  VNARILFVDPSTRAVGLTLNQQLLRLKVPSINVKAGEIYDKARVLRMDKRAGLFLEIPS- 435

Query: 299  PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 358
            P  +P +V+I DV++++V+ +EKK+KEGS  RVR+LG RHLEG+A G LK SAFEG VFT
Sbjct: 436  PTPSPGFVSIHDVSDKDVKNVEKKFKEGSMARVRVLGVRHLEGVAIGTLKESAFEGSVFT 495

Query: 359  HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-IVKPGKKFKVGAELVF 417
            H+DVKPGMVV+ KV+ V+ FGAIVQF  GVKALCPLPHMSE E +VKP KKFKVG EL F
Sbjct: 496  HADVKPGMVVRAKVVTVEPFGAIVQFSSGVKALCPLPHMSELEHVVKPPKKFKVGVELTF 555

Query: 418  RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
            RVLG KSKRITVT KK+LVKSKL +L+SYA+A   L+THGWITKIEKHGCFV+FYNGVQG
Sbjct: 556  RVLGCKSKRITVTFKKSLVKSKLDVLASYADAKIGLLTHGWITKIEKHGCFVKFYNGVQG 615

Query: 478  FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGS 537
            F  RSELGL+PG E  ++YHVGQVVKCR++S +PASR+IN++F++   RV + D  K+GS
Sbjct: 616  FVSRSELGLEPGTEAENVYHVGQVVKCRVVSVVPASRKINVTFLISTNRVIQADTPKVGS 675

Query: 538  LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 597
            +VSGVV+ +TP AVVV V   G+ KG+I  EHLADH                       D
Sbjct: 676  IVSGVVERLTPAAVVVSV--NGFCKGSILNEHLADHR----------------------D 711

Query: 598  NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
             E  NL+LSAK SLIN A  +PS+ S +H  SV HGYVCNIIE GCFVRFLG LTGF+P+
Sbjct: 712  VEGQNLVLSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFVRFLGHLTGFSPK 771

Query: 658  SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 717
             KAVD     LS  +YVGQSVRS+IL+VN+E+ R+ LSL+QS CSS D SF+Q +FLL++
Sbjct: 772  DKAVDRSVEKLSNAFYVGQSVRSHILNVNAESARVKLSLQQSMCSSADCSFVQGYFLLDQ 831

Query: 718  KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 777
            KI  L+ S  + S   W+  F IG+++EG+V    ++GV+++F+ H DV G I HHQL  
Sbjct: 832  KITELKYSDPSSSFHDWLNTFAIGNLVEGEVGAIEEYGVILNFQSHPDVVGLIEHHQLGD 891

Query: 778  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
            ++VE GS ++  ++D++    +V++SLK+  +      + ++  +KKKR R A  DL +H
Sbjct: 892  SSVEVGSSVKGLVIDLSDG--VVNISLKSELV-----RSVSKVGKKKKRHRAAVMDLELH 944

Query: 838  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSS 897
            + VNAIVEIVKE+++VLS+PEYN++IG+A + DYN+Q  P   + NGQ +   V ++PSS
Sbjct: 945  EEVNAIVEIVKESHVVLSIPEYNYAIGFAPLMDYNSQLLPCCNYENGQRITVVVGSMPSS 1004

Query: 898  STAGRLLLLLKAISETETSSSKRAKKKS-SYDVGSLVQAEITEIKPLELRLKFGIGFHGR 956
               GRLLLL KA  +  + SS +  KK   + VGSLV+AEI +IKPLEL LKFG   HGR
Sbjct: 1005 GPTGRLLLLPKASGKNSSVSSSKRAKKKSDFKVGSLVEAEIIDIKPLELLLKFGSNLHGR 1064

Query: 957  IHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLTVSE 1015
            IHITEV DD SN  +  FS  +IG++V ARI+A++       K+  WELSI+PS+L    
Sbjct: 1065 IHITEVFDDDSN--DCPFSELQIGRSVQARIVAEAEHSGKGGKNSKWELSIRPSLLQGGL 1122

Query: 1016 IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR 1075
                    E   SIG  V  YV KVD EW  LT+SR + A LFILDS+ EP EL++FQ+R
Sbjct: 1123 EDFTPPKAELRHSIGGIVHAYVVKVDREWIWLTVSRDVMAHLFILDSSAEPGELEKFQQR 1182

Query: 1076 FHIGKAVTGHVLSINKEKKLLRLVL---RPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1132
            + +G+AV G ++ +N+EK+LLRL     +   + I +    +S     T   +GDI+GGR
Sbjct: 1183 YSVGQAVKGRIIGVNREKRLLRLKALDSQSLPENIGETQKPLSATVEHT--KQGDIIGGR 1240

Query: 1133 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1192
            I KIL GVGGLV+QIGPHL+GRVH+TE+ +  V +P+SG+ EGQ           FVKCK
Sbjct: 1241 IQKILPGVGGLVIQIGPHLHGRVHYTEIVDSWVQEPISGFHEGQ-----------FVKCK 1289

Query: 1193 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1252
            VL++SR+  G+  V+LSLRSS+   +S  S  L  D        EKI DL P   V+GYV
Sbjct: 1290 VLDVSRSSEGSVRVDLSLRSSM-CANSNQSRRLFDDSRIRTSRFEKINDLCPGTEVKGYV 1348

Query: 1253 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1312
            K+V SKGCFIM+SR ++A+++LSNLSD YVE+P+ +FP+G LV GRVLS EP S +VEV+
Sbjct: 1349 KSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQNDFPVGLLVHGRVLSSEPQSGKVEVS 1408

Query: 1313 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
            L+ +    + +S+  + S+LHVGDI+ GQ+KRVES+GLF+TI+ + LV LCHVSELS++ 
Sbjct: 1409 LRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVTIQGSELVALCHVSELSDEP 1468

Query: 1373 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVG 1432
            V +I + ++AG+K+       D+E+ R+S+GMK SY   D+     +S++E DE + E  
Sbjct: 1469 VLDIHSCHKAGDKI-------DEERHRVSIGMKKSYIGPDSTG--DTSDDEDDEIVPEEI 1519

Query: 1433 SYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN 1492
            S N                M  +   +LVL + ESRASV PL+V+LD+ +       ++ 
Sbjct: 1520 SRNPV--------------MGRDRNHALVLPKPESRASVLPLQVSLDESEGSDQENDNKG 1565

Query: 1493 QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSS 1552
            Q   + A+  D+K+N+  K+K +++RE EI A EER L++D P+TPDEFE+LVRSSPNSS
Sbjct: 1566 QEIANGAEVDDKKSNKRLKEKARKQRELEISALEERALQRDIPQTPDEFEKLVRSSPNSS 1625

Query: 1553 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1612
            FVWI YMAF+L +ADV+KAR++AERAL+TINIREE EKLN+WVAYFNLENEYG+P E+AV
Sbjct: 1626 FVWINYMAFLLDLADVDKARAVAERALRTINIREEEEKLNVWVAYFNLENEYGSPREDAV 1685

Query: 1613 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1672
             K+FQRALQYCDPKKVHLALL +YERTEQ  LADELL +M K+FK SCK+WLR +Q  LK
Sbjct: 1686 KKIFQRALQYCDPKKVHLALLAMYERTEQYTLADELLDRMTKRFKTSCKIWLRCIQLSLK 1745

Query: 1673 QQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1730
            Q +  E ++ +V+RALLSLP+ K IKF+SQTAILEFK GV + GRS FE IL EYPKRTD
Sbjct: 1746 QSKDVECIKLIVKRALLSLPQSKRIKFLSQTAILEFKCGVPEEGRSRFELILREYPKRTD 1805

Query: 1731 LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1790
            LWS+YLDQ                            FLFKKYLEYEKS G+EERIE+VKQ
Sbjct: 1806 LWSVYLDQ----------------------------FLFKKYLEYEKSQGDEERIEHVKQ 1837

Query: 1791 KAMEYVESTLA 1801
            KA+EYV+S+LA
Sbjct: 1838 KALEYVQSSLA 1848


>gi|357124172|ref|XP_003563778.1| PREDICTED: protein RRP5 homolog [Brachypodium distachyon]
          Length = 1668

 Score = 1803 bits (4670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 940/1714 (54%), Positives = 1236/1714 (72%), Gaps = 101/1714 (5%)

Query: 101  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 160
            VLTA VKS+EDHGYIL+FG+ +F+GF+P+    +   + ++ G L+Q VV++ID+ R ++
Sbjct: 43   VLTAQVKSVEDHGYILYFGVSTFSGFMPK---CDKETVKIESGQLVQCVVKAIDKARAII 99

Query: 161  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 220
            +LS D D +SK + KDLKG+SID L+PGMM++ RV ++LENGVMLSFLTYFTGT DIF+L
Sbjct: 100  HLSCDEDLLSKSIIKDLKGLSIDHLIPGMMMNARVHTVLENGVMLSFLTYFTGTADIFNL 159

Query: 221  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 280
             N+FP+ NWK+DY+++KKVNARILFVDP++RAVGLTLN +LL    PP +VKVG+IY++S
Sbjct: 160  SNSFPSGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNQHLLRFEVPPVNVKVGEIYERS 219

Query: 281  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 340
            +V+R+D+  GL L+IPS P  +P +V+I DV++++V+K+EKK+KEGS  RVR+LG RHLE
Sbjct: 220  RVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKKVEKKFKEGSITRVRVLGVRHLE 278

Query: 341  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
            G+A G LK SAFEG VFTH+DVKPGMV                F GGVKALCPL HMSE 
Sbjct: 279  GVALGTLKDSAFEGSVFTHADVKPGMV----------------FAGGVKALCPLRHMSEL 322

Query: 401  E-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 459
            + +VKP KKFKVGAEL+FRVLG KSKRITVT+KK+LVKSKL +L+SYA+A   L+THGWI
Sbjct: 323  DNVVKPPKKFKVGAELLFRVLGCKSKRITVTYKKSLVKSKLEVLASYADAKIGLVTHGWI 382

Query: 460  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
            TKIEKHGCFVRFYNGV+GF  RSELGL+PG E  S+YHVGQVVKCRI+S +PAS ++N+S
Sbjct: 383  TKIEKHGCFVRFYNGVKGFVSRSELGLEPGTEAGSVYHVGQVVKCRIVSVVPASMKLNVS 442

Query: 520  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 579
            F     R+ + D  K+G++VS VV+ +TP AVVV V   G+SKG+I  EHLADH      
Sbjct: 443  FATSSNRIIQADTAKVGTIVSAVVERLTPAAVVVSV--NGFSKGSILDEHLADHH----- 495

Query: 580  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 639
                             D E  NL+LSAK SLINSA  +PS+ S +   +VVHGY+CNII
Sbjct: 496  -----------------DTEGQNLILSAKQSLINSANDIPSEISQMQAGAVVHGYICNII 538

Query: 640  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            E GCFVRFLG LTGF+P+ KAVD     LS  ++VGQSVRS+IL+VN+E+ R+ LSL+QS
Sbjct: 539  EAGCFVRFLGHLTGFSPKDKAVDIPMEKLSAAFFVGQSVRSHILNVNAESARLKLSLQQS 598

Query: 700  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 759
             CSS D SFMQ +FLL++KIA ++ S  + S   W +   IGS+++G+V    ++GV+++
Sbjct: 599  VCSSPDCSFMQGYFLLDQKIAEMKYSGSSTSH-DWKKSLGIGSLVKGEVGAVEEYGVILN 657

Query: 760  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            F++H DV G I HHQL G+TV+ GS ++  I+D++    +V+LSLK   I      + + 
Sbjct: 658  FKDHPDVVGLIEHHQLGGSTVKVGSSVKGLIVDLSDG--VVNLSLKPELI-----GSVSM 710

Query: 820  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQK 879
              +KKKR R A  DL +H+ VNA+VEIVKE+Y+VLS+PEYNH+IG+A + DYN+Q  P  
Sbjct: 711  DGKKKKRHRAAVLDLELHEEVNAVVEIVKESYVVLSVPEYNHAIGFAPLMDYNSQLLPHH 770

Query: 880  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 939
             + NGQ +   V ++PSS  +GRL+LL K   +    SS R  KK S  VGSLV+AE+ +
Sbjct: 771  HYDNGQRITVVVGSIPSSDPSGRLILLPKTSGQGSGLSSSRKAKKLSDKVGSLVEAEVID 830

Query: 940  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS-NKPDMKK 998
            IKPLEL +KFG+  HGRIHITEV +D  +  E+ FS  +IGQ + AR++A++ +  +  +
Sbjct: 831  IKPLELIVKFGVNHHGRIHITEVLEDDCS--EHPFSKLRIGQKIHARVVAQAEHSANSGR 888

Query: 999  SFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1058
               WELSI+PS+L         L  + + S+   V  YV KVD EW  LT+SR++ A LF
Sbjct: 889  KLKWELSIRPSVLQGESKQLNALENKSNHSVNGIVRAYVVKVDREWVWLTVSRNVTAHLF 948

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
            ILDS+ EP EL+EFQ+R+ +G+AV G+++ +N+EKKLLRL  +   +    K +D +   
Sbjct: 949  ILDSSVEPIELKEFQQRYRVGQAVKGYIIGVNREKKLLRL--KALDNQAMLKNIDDTQKP 1006

Query: 1119 MQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1175
            + +      EGDI+GGRI KIL GVGGL++QIGPHL+GRVH+TE+ +  V +PLSG+ EG
Sbjct: 1007 ISSIAEHTKEGDIIGGRIQKILPGVGGLLIQIGPHLHGRVHYTEIVDSWVPEPLSGFHEG 1066

Query: 1176 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1235
                       QFVKCKVL +SR   G+  VELSLRSS+   S   S  L  D  T    
Sbjct: 1067 -----------QFVKCKVLAVSRPSEGSVRVELSLRSSILCTSHDPSRKLVDDSATCTTR 1115

Query: 1236 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1295
             E + DLSP   V+GYVKNV +KGCFIMLSR ++A+++LSNLSD YVE+P+K+F +G LV
Sbjct: 1116 FENVNDLSPGSEVKGYVKNVNAKGCFIMLSRMIEARIILSNLSDEYVENPQKDFSVGMLV 1175

Query: 1296 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
             GRVLS EPLS +VEV+L+      + +S+  + S+LHVGDI+ GQ+KRVESYGLF+TI+
Sbjct: 1176 HGRVLSAEPLSGKVEVSLRKGTGSKSQKSDGISYSDLHVGDIIDGQVKRVESYGLFVTIQ 1235

Query: 1356 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN---D 1412
            ++ LVGLCHVSELS++ V +I + Y+AG+ VK KILK+D+E+RR+SLGMK SYF +   D
Sbjct: 1236 SSELVGLCHVSELSDEPVLDINSCYKAGDMVKAKILKIDEERRRVSLGMKKSYFVSGLTD 1295

Query: 1413 ADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVP 1472
              N     +E     I  V                   +M S+   +LV+ + E RASV 
Sbjct: 1296 GINDDDDDDERVPMDINHVP------------------EMSSDLNSALVVPEPEPRASVL 1337

Query: 1473 PLEVNLDD-EQPDMDNGISQNQGH--TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1529
            PL+V+LD+ E  D D   S ++G    +   +I +K+++  K+K +++RE +I A EER 
Sbjct: 1338 PLQVSLDEYEGSDQD---SDDKGPKIANGTGSIVQKSDKRLKEKARKQRELDISALEERA 1394

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L+KD P+TPDEFE+LVRSSPNSSFVWI YMAF+L +ADVEKARS+AERAL+TIN+REE E
Sbjct: 1395 LQKDIPKTPDEFEKLVRSSPNSSFVWINYMAFLLDLADVEKARSVAERALRTINMREEEE 1454

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLN+WVAYFNLENEYG P E+AV K+FQRA+QYCDPKKVHLALLG+YERT+Q++LADEL 
Sbjct: 1455 KLNVWVAYFNLENEYGCPREDAVKKIFQRAMQYCDPKKVHLALLGMYERTDQHELADELF 1514

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1707
             +M K+FK SCK+WLRR+Q  LKQ +  E +++++ RALLSLP+ K IKF+SQTAILEFK
Sbjct: 1515 DRMTKRFKTSCKIWLRRIQFSLKQGRDVEYIKSIINRALLSLPQSKRIKFLSQTAILEFK 1574

Query: 1708 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1767
             GV + GRS FE IL EYPKRTDLWS+YLDQEIRLGD D+IR LF+R   LSLPPKKMKF
Sbjct: 1575 CGVPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDTDVIRALFDRVTCLSLPPKKMKF 1634

Query: 1768 LFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            LFKKYL YEKS G+ ER+E V QKA EY + + A
Sbjct: 1635 LFKKYLAYEKSQGDRERMELVMQKATEYAKISQA 1668



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 39/168 (23%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALD-------PILDNEIEANEDNLLPTIF 53
           MKLWGVV EVN+KD+++ LPGG+RG  R  +  D        +L  ++++ ED+     F
Sbjct: 1   MKLWGVVIEVNQKDVIVSLPGGMRGFVRKDEVSDLALHGNHKVLTAQVKSVEDHGYILYF 60

Query: 54  HV-------------------GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL------- 87
            V                   GQLV C+V  +D       +  I LS    LL       
Sbjct: 61  GVSTFSGFMPKCDKETVKIESGQLVQCVVKAIDK-----ARAIIHLSCDEDLLSKSIIKD 115

Query: 88  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 135
            KGLS++ +  GM++ A V ++ ++G +L F L  FTG     NL+ +
Sbjct: 116 LKGLSIDHLIPGMMMNARVHTVLENGVMLSF-LTYFTGTADIFNLSNS 162


>gi|33235571|dbj|BAC79783.2| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group]
 gi|50508626|dbj|BAD31015.1| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group]
          Length = 1668

 Score = 1795 bits (4648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 948/1709 (55%), Positives = 1235/1709 (72%), Gaps = 91/1709 (5%)

Query: 101  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 160
            VLTA VKSIEDHGYILHFG+ SF+GF+P+   A+     ++ G L+Q VV++ID+ R++V
Sbjct: 43   VLTAQVKSIEDHGYILHFGVSSFSGFMPK---ADRESAKIESGQLIQCVVKAIDKAREIV 99

Query: 161  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 220
            +LSSD D +SK + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFLTYFTGT DIF+L
Sbjct: 100  HLSSDEDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTYFTGTADIFNL 159

Query: 221  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 280
             N+FP+ +WK+DY ++KKVNARILFVDP++RAVGLTLN  LL  + P  +VK G+IYD++
Sbjct: 160  SNSFPSGSWKDDYIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPSINVKAGEIYDKA 219

Query: 281  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 340
            +V+R+D+  GL L+IPS P  +P +V+I DV++++V+ +EKK+KEGS  RVR+LG RHLE
Sbjct: 220  RVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSMARVRVLGVRHLE 278

Query: 341  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
            G+A G LK SAFEG VFTH+DVKPGMV                F  GVKALCPLPHMSE 
Sbjct: 279  GVAIGTLKESAFEGSVFTHADVKPGMV----------------FSSGVKALCPLPHMSEL 322

Query: 401  E-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 459
            E +VKP KKFKVG EL FRVLG KSKRITVT KK+LVKSKL +L+SYA+A   L+THGWI
Sbjct: 323  EHVVKPPKKFKVGVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYADAKIGLLTHGWI 382

Query: 460  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
            TKIEKHGCFV+FYNGVQGF  RSELGL+PG E  ++YHVGQVVKCR++S +PASR+IN++
Sbjct: 383  TKIEKHGCFVKFYNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVVSVVPASRKINVT 442

Query: 520  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 579
            F++   RV + D  K+GS+VSGVV+ +TP AVVV V   G+ KG+I  EHLADH      
Sbjct: 443  FLISTNRVIQADTPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILNEHLADHR----- 495

Query: 580  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 639
                             D E  NL+LSAK SLIN A  +PS+ S +H  SV HGYVCNII
Sbjct: 496  -----------------DVEGQNLVLSAKQSLINCASDIPSEISQMHAGSVFHGYVCNII 538

Query: 640  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            E GCFVRFLG LTGF+P+ KAVD     LS  +YVGQSVRS+IL+VN+E+ R+ LSL+QS
Sbjct: 539  EAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNAESARVKLSLQQS 598

Query: 700  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 759
             CSS D SF+Q +FLL++KI  L+ S  + S   W+  F IG+++EG+V    ++GV+++
Sbjct: 599  MCSSADCSFVQGYFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGEVGAIEEYGVILN 658

Query: 760  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            F+ H DV G I HHQL  ++VE GS ++  ++D++    +V++SLK+  +      + ++
Sbjct: 659  FQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSELV-----RSVSK 711

Query: 820  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQK 879
              +KKKR R A  DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A + DYN+Q  P  
Sbjct: 712  VGKKKKRHRAAVMDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAPLMDYNSQLLPCC 771

Query: 880  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS-SYDVGSLVQAEIT 938
             + NGQ +   V ++PSS   GRLLLL KA  +  + SS +  KK   + VGSLV+AEI 
Sbjct: 772  NYENGQRITVVVGSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSDFKVGSLVEAEII 831

Query: 939  EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK- 997
            +IKPLEL LKFG   HGRIHITEV DD SN  +  FS  +IG++V ARI+A++       
Sbjct: 832  DIKPLELLLKFGSNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQARIVAEAEHSGKGG 889

Query: 998  KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1057
            K+  WELSI+PS+L            E   SIG  V  YV KVD EW  LT+SR + A L
Sbjct: 890  KNSKWELSIRPSLLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWIWLTVSRDVMAHL 949

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RPFQDGISDKTVDI 1114
            FILDS+ EP EL++FQ+R+ +G+AV G ++ +N+EK+LLRL     +   + I +    +
Sbjct: 950  FILDSSAEPGELEKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQSLPENIGETQKPL 1009

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            S     T   +GDI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +  V +P+SG+ E
Sbjct: 1010 SATVEHT--KQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVDSWVQEPISGFHE 1067

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
            GQ           FVKCKVL++SR+  G+  V+LSLRSS+   +S  S  L  D      
Sbjct: 1068 GQ-----------FVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQSRRLFDDSRIRTS 1115

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
              EKI DL P   V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YVE+P+ +FP+G L
Sbjct: 1116 RFEKINDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQNDFPVGLL 1175

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            V GRVLS EP S +VEV+L+ +    + +S+  + S+LHVGDI+ GQ+KRVES+GLF+TI
Sbjct: 1176 VHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVTI 1235

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
            + + LV LCHVSELS++ V +I + ++AG+KVK KILK+D+E+ R+S+GMK SY   D+ 
Sbjct: 1236 QGSELVALCHVSELSDEPVLDIHSCHKAGDKVKAKILKIDEERHRVSIGMKKSYIGPDST 1295

Query: 1415 NLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPL 1474
                +S++E DE + E  S N                M  +   +LVL + ESRASV PL
Sbjct: 1296 G--DTSDDEDDEIVPEEISRNPV--------------MGRDRNHALVLPKPESRASVLPL 1339

Query: 1475 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA 1534
            +V+LD+ +       ++ Q   +  +  D+K+N+  K+K +++RE EI A EER L++D 
Sbjct: 1340 QVSLDESEGSDQENDNKGQEIANGTEVDDKKSNKRLKEKARKQRELEISALEERALQRDI 1399

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P+TPDEFE+LVRSSPNSSFVWI YMAF+L +ADV+KAR++AERAL+TINIREE EKLN+W
Sbjct: 1400 PQTPDEFEKLVRSSPNSSFVWINYMAFLLDLADVDKARAVAERALRTINIREEEEKLNVW 1459

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            VAYFNLENEYG+P E+AV K+FQRALQYCDPKKVHLALL +YERTEQ  LADELL +M K
Sbjct: 1460 VAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLAMYERTEQYTLADELLDRMTK 1519

Query: 1655 KFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            +FK SCK+WLR +Q  LKQ +  E ++ +V+RALLSLP+ K  KF+SQTAILEFK GV +
Sbjct: 1520 RFKTSCKIWLRCIQLSLKQSKDVECIKLIVKRALLSLPQSKRRKFLSQTAILEFKCGVPE 1579

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
             GRS FE IL EYPKRTDLWS+YLDQEIRLGD ++IR LFER   LSLPPKKMKFLFKKY
Sbjct: 1580 EGRSRFELILREYPKRTDLWSVYLDQEIRLGDTEIIRALFERVTCLSLPPKKMKFLFKKY 1639

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            LEYEKS G+EERIE+VKQKA+EYV+S+LA
Sbjct: 1640 LEYEKSQGDEERIEHVKQKALEYVQSSLA 1668



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 29/161 (18%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALD-------PILDNEIEANEDNLLPTIF 53
           MKLWGVV EVN+KD+V+ LPGG+RG  R+ +  D        +L  ++++ ED+     F
Sbjct: 1   MKLWGVVIEVNQKDIVVSLPGGMRGFVRSEEVHDITSQETRKVLTAQVKSIEDHGYILHF 60

Query: 54  HV-------------------GQLVSCIVLQLDDDKK--EIGKRKIWLSLRLSLLYKGLS 92
            V                   GQL+ C+V  +D  ++   +   +  LS  +    KGLS
Sbjct: 61  GVSSFSGFMPKADRESAKIESGQLIQCVVKAIDKAREIVHLSSDEDLLSKSIIKDLKGLS 120

Query: 93  LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA 133
           ++ +  GM++ A V S+ ++G +L F L  FTG     NL+
Sbjct: 121 IDHLIPGMMVNARVHSVLENGVMLSF-LTYFTGTADIFNLS 160


>gi|255581558|ref|XP_002531584.1| programmed cell death protein, putative [Ricinus communis]
 gi|223528780|gb|EEF30787.1| programmed cell death protein, putative [Ricinus communis]
          Length = 1330

 Score = 1770 bits (4584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 916/1365 (67%), Positives = 1086/1365 (79%), Gaps = 90/1365 (6%)

Query: 481  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 540
            RSELG++PG + SSMYHVGQVVKCR++SS+PASRRINLSF MKPTRV +++ +KLGS+V+
Sbjct: 12   RSELGIEPGNDASSMYHVGQVVKCRVLSSLPASRRINLSFTMKPTRVPKEEALKLGSVVA 71

Query: 541  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 600
            GVV+ VT NAV+VYV +KGY++G I TEHLAD  E A + KSV+KPGYEFDQLLVLD E+
Sbjct: 72   GVVEKVTSNAVIVYVNSKGYTRGIISTEHLADRHEQAALFKSVLKPGYEFDQLLVLDIEN 131

Query: 601  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 660
            +NL+LSAKYSL+NSA QLPSD + IHP S+VHGY+CN+I+TGCFVRFLGRLTGF+P+SKA
Sbjct: 132  NNLVLSAKYSLVNSAHQLPSDLTEIHPQSIVHGYICNLIDTGCFVRFLGRLTGFSPKSKA 191

Query: 661  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 720
            +D Q+A LS+ +Y+GQSVRSNI+DV+SET RIT+SLKQS CSSTDASF+QE+FL+EEK+A
Sbjct: 192  MDNQKAQLSEAFYIGQSVRSNIIDVSSETNRITVSLKQSSCSSTDASFLQEYFLVEEKVA 251

Query: 721  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 780
             LQSS   G +LKWVEGF IG+V+E KV ES + G+VVSF++++DV GFITH+QL G TV
Sbjct: 252  ELQSSDSKGPDLKWVEGFNIGTVVEAKVEESKEVGIVVSFDKYNDVLGFITHYQLGGTTV 311

Query: 781  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 840
            E+GS I+AA+LDVAK E LVDLSLK  F+D+  +  SN Q  KKKRKRE  K+L V+Q+V
Sbjct: 312  ETGSTIRAAVLDVAKTEHLVDLSLKPEFLDKCTDEKSNSQTHKKKRKREVLKNLEVYQSV 371

Query: 841  NAIVEIVKENYL----------------------------VLSLPEYNHSIGYASVSDYN 872
             A+VEIVKENY+                            VLS+PE+N+ IGYASVSDYN
Sbjct: 372  TAVVEIVKENYMASALFFPLDDRCCTNSNVSSCSSVPLKQVLSIPEHNYIIGYASVSDYN 431

Query: 873  TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDVGS 931
             QK PQKQFLNGQSV+ATVMALPSSSTAGRLLLLLK+ISE TETSS+K+AKKKSSY +GS
Sbjct: 432  IQKLPQKQFLNGQSVVATVMALPSSSTAGRLLLLLKSISEITETSSTKKAKKKSSYKIGS 491

Query: 932  LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 991
            LVQA                         EVNDD    +E+ F++FKIGQTVTARI+AK+
Sbjct: 492  LVQA-------------------------EVNDD--CFLEDPFTSFKIGQTVTARIVAKT 524

Query: 992  NKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1050
            +K D  K+ LWELSIKP +LT   E   KL+ +E + S G R+TGYVYKVD+EWA LTIS
Sbjct: 525  SKAD--KNQLWELSIKPKVLTDFWESEDKLMSKEFEFSSGHRITGYVYKVDSEWAWLTIS 582

Query: 1051 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD----- 1105
            RHLKAQLFILDSA EPSELQEFQ+RF +GKAV+G+VLS NKEK LLRLV RP        
Sbjct: 583  RHLKAQLFILDSACEPSELQEFQKRFFVGKAVSGYVLSYNKEKTLLRLVQRPLCAVSCIH 642

Query: 1106 ------GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1159
                    +D   ++  DN   +I EGDIVGG+ISKILSGVGG++VQIGPH++G+VH+TE
Sbjct: 643  VNGEALNKNDAQNEVRRDNAAAYIQEGDIVGGKISKILSGVGGVLVQIGPHVHGKVHYTE 702

Query: 1160 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1219
            L+   V +P           L GY EGQFVKCKVLEISR+ +GT H++LSLR SLDGM S
Sbjct: 703  LQESWVPNP-----------LDGYREGQFVKCKVLEISRSDKGTTHIDLSLRFSLDGMLS 751

Query: 1220 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1279
             NSS+LS + D   + +EKI+DL PN +VQGYVKNV  KGCFI LSRK+DAK+LLSNLSD
Sbjct: 752  QNSSELSKNAD---QRVEKIDDLQPNTVVQGYVKNVAPKGCFIFLSRKIDAKILLSNLSD 808

Query: 1280 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1339
             +V SPE+EFPIGKLV GRVLSVEPLSKRVEVTLK  ++++  +SE+N+LS L+VGD   
Sbjct: 809  EFVVSPEEEFPIGKLVTGRVLSVEPLSKRVEVTLK-KNAKSTGKSELNDLSRLNVGDTAS 867

Query: 1340 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1399
            G+IKRVE YGLFI I++TNLVGLCHVSELS+DHVD++ET YRAGEKV  +ILKVD E+RR
Sbjct: 868  GRIKRVEPYGLFIAIDHTNLVGLCHVSELSDDHVDSVETKYRAGEKVTARILKVDVERRR 927

Query: 1400 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN--RSSLLENSSVAVQDMDMESEDG 1457
            ISLG+K+    ND D L   S+EES +AI E G+ +   S    +SS A++ MD+ESE+ 
Sbjct: 928  ISLGIKNLDNGNDTDIL--PSQEESSDAISENGTTDDGDSKPHYSSSPAIEGMDIESENE 985

Query: 1458 GSLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKE 1516
               VLA  ESRAS+PPL V LDD E  D+D+ ISQ Q   D+ K  DEK+ R AKKK KE
Sbjct: 986  EHAVLAHAESRASIPPLNVTLDDVEHSDVDDTISQTQEQIDKTKIADEKDTRQAKKKVKE 1045

Query: 1517 EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1576
            EREQEIRAAEERLLEKD PRT DEFE+LV  SPN+SFVWIKYMAFML +AD+EKARSIAE
Sbjct: 1046 EREQEIRAAEERLLEKDIPRTADEFEKLVHGSPNNSFVWIKYMAFMLDLADIEKARSIAE 1105

Query: 1577 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1636
            RAL+TIN REENEKLN+WVAYFNLENEYGNPPEEAV  VFQRALQYCDPKKVHLALLG+Y
Sbjct: 1106 RALRTINFREENEKLNVWVAYFNLENEYGNPPEEAVKNVFQRALQYCDPKKVHLALLGVY 1165

Query: 1637 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIK 1696
            ERTEQ+KLADELL +M+KKFK SCK+WLRRVQR LKQ+Q+GVQ+ V+RALLSLPRHKHIK
Sbjct: 1166 ERTEQHKLADELLDRMVKKFKISCKIWLRRVQRHLKQEQDGVQSTVKRALLSLPRHKHIK 1225

Query: 1697 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1756
            FISQ AILEFK GV DRGRSMFEGIL EYPKRTDLWS+YLDQEIRLGDVD+ R LFERA 
Sbjct: 1226 FISQAAILEFKCGVPDRGRSMFEGILREYPKRTDLWSVYLDQEIRLGDVDVTRTLFERAT 1285

Query: 1757 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            SLSLP KKM+FLFKKYLEYEKSVG+EE+IE VK+KAMEYVEST+A
Sbjct: 1286 SLSLPAKKMQFLFKKYLEYEKSVGDEEQIESVKKKAMEYVESTMA 1330



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 15/169 (8%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQF--PGGVKALCPLPHMSEFE--------IVKPGKKFKV 411
           +K G VV G V  V S   IV     G  + +    H+++          ++KPG +F  
Sbjct: 64  LKLGSVVAGVVEKVTSNAVIVYVNSKGYTRGIISTEHLADRHEQAALFKSVLKPGYEFDQ 123

Query: 412 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 471
                  VL +++  + ++ K +LV S   + S   E   + I HG+I  +   GCFVRF
Sbjct: 124 -----LLVLDIENNNLVLSAKYSLVNSAHQLPSDLTEIHPQSIVHGYICNLIDTGCFVRF 178

Query: 472 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
              + GF+P+S+   +   + S  +++GQ V+  I+     + RI +S 
Sbjct: 179 LGRLTGFSPKSKAMDNQKAQLSEAFYIGQSVRSNIIDVSSETNRITVSL 227



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 20/216 (9%)

Query: 323 YKEGSCVRVRILGFRHLEGLATGILKASAF--EGLVFTHS---------------DVKPG 365
           Y+EG  V+ ++L     +   T I  +  F  +G++  +S               D++P 
Sbjct: 715 YREGQFVKCKVLEISRSDKGTTHIDLSLRFSLDGMLSQNSSELSKNADQRVEKIDDLQPN 774

Query: 366 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK-- 423
            VV+G V  V   G  +     + A   L ++S+  +V P ++F +G  +  RVL V+  
Sbjct: 775 TVVQGYVKNVAPKGCFIFLSRKIDAKILLSNLSDEFVVSPEEEFPIGKLVTGRVLSVEPL 834

Query: 424 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF-YNGVQGFAPRS 482
           SKR+ VT KK    +  + L+  +         G I ++E +G F+   +  + G    S
Sbjct: 835 SKRVEVTLKKNAKSTGKSELNDLSRLNVGDTASGRIKRVEPYGLFIAIDHTNLVGLCHVS 894

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 518
           EL  D      + Y  G+ V  RI+      RRI+L
Sbjct: 895 ELSDDHVDSVETKYRAGEKVTARILKVDVERRRISL 930


>gi|356498361|ref|XP_003518021.1| PREDICTED: protein RRP5 homolog [Glycine max]
          Length = 2174

 Score = 1610 bits (4170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 807/1220 (66%), Positives = 981/1220 (80%), Gaps = 52/1220 (4%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MKLWGVVAEVNEKDLV+ LPGGLRGL  A+DA+DPI D++IE  E   L  +F VGQLVS
Sbjct: 268  MKLWGVVAEVNEKDLVVSLPGGLRGLVHASDAVDPIFDDKIEVGEI-FLSGVFCVGQLVS 326

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
            C+VL+LDDDKKE G RKIWLSLRLSLL+K  +L+ VQEGMVL AYVKSIEDHGYILHFGL
Sbjct: 327  CVVLRLDDDKKEKGSRKIWLSLRLSLLHKNYNLDVVQEGMVLAAYVKSIEDHGYILHFGL 386

Query: 121  PSFTGFLPRNNLA-ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG 179
            PSF GFLP+N+ A + S   +K G LLQG+VR+ID+ RKVVYLSSDPDT+SK VTKDL+G
Sbjct: 387  PSFLGFLPKNSSAGKKSSNYLKIGKLLQGLVRTIDKVRKVVYLSSDPDTMSKSVTKDLRG 446

Query: 180  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 239
            +SIDLLVPGM+V+ RV+SILENGVMLSFLTYFTGTVD+FHLQN +P TNWK+  ++ +KV
Sbjct: 447  LSIDLLVPGMLVNARVKSILENGVMLSFLTYFTGTVDLFHLQNIYPGTNWKDKCSESQKV 506

Query: 240  NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 299
             +RILF+DP+SRAVGLTLNP+L+ NRAPPSHVK+GDIYD SKVVRVDRGLGLLL++PS P
Sbjct: 507  VSRILFIDPSSRAVGLTLNPHLVQNRAPPSHVKIGDIYDNSKVVRVDRGLGLLLEVPSIP 566

Query: 300  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 359
              TPA+V+               YKEG+ VRVRILG R+LEG+ATG+LKASA E  VFTH
Sbjct: 567  EPTPAFVS---------------YKEGNRVRVRILGLRYLEGIATGVLKASALEEEVFTH 611

Query: 360  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
            SDVKPGMVVK K+++VDSFGAIVQ PGGVKALCPL HMSE EI KPGKKFKVGAELVFRV
Sbjct: 612  SDVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEISKPGKKFKVGAELVFRV 671

Query: 420  LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
            LG KSKR+TVTHKKTLVKSKL I+SSYA+ATD LITHGWITKIE HGCFVRFYNGVQGFA
Sbjct: 672  LGCKSKRVTVTHKKTLVKSKLGIISSYADATDGLITHGWITKIEVHGCFVRFYNGVQGFA 731

Query: 480  PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLV 539
            PRSELGL+PG +P ++Y+VGQVVKCR++S IPASRRINL           +D+V LGSLV
Sbjct: 732  PRSELGLEPGADPGTVYNVGQVVKCRVISCIPASRRINL-----------NDMVTLGSLV 780

Query: 540  SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 599
            SGVVD +T NAVVVYV A G+S+GTI  EHLADH   A +M S +KPGY FDQLLVLD +
Sbjct: 781  SGVVDRITSNAVVVYVNASGFSRGTISMEHLADHHGQAILMHSRLKPGYNFDQLLVLDVK 840

Query: 600  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
             +NL+LSAK SLI  AQQ+P+D + IHPNSVVHGY+CN+IE+GCFVRFLG LTGFAPR+K
Sbjct: 841  GNNLILSAKSSLIKHAQQIPADINQIHPNSVVHGYICNLIESGCFVRFLGHLTGFAPRNK 900

Query: 660  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 719
            A D Q++++ + YY+GQSVRSNI +V+SETGR+TLSLKQ+ CSSTDASF+Q++FL+++KI
Sbjct: 901  AADDQKSNILEAYYIGQSVRSNISNVSSETGRVTLSLKQTACSSTDASFIQDYFLMDDKI 960

Query: 720  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 779
            A LQ      S+ KW EGF IG V +GKV +  D G+ +SFE+H+DV+GFI ++QLAG  
Sbjct: 961  AKLQYWGSGASDSKWDEGFNIGMVAKGKVKDVEDVGLAISFEKHNDVFGFIANYQLAGTI 1020

Query: 780  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 839
            +ESGSV++A +LDVAKA++LV+L+LK  FI+R +E+ S     KKKR+REASKDL +HQT
Sbjct: 1021 LESGSVVEALVLDVAKADKLVELTLKPEFINRSKES-STSHTNKKKRRREASKDLVLHQT 1079

Query: 840  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 899
            VNA+VEIVKENYLVLS+PE +++IGYASVSDYN Q+FP KQ+ NGQSV+ATVMALPS  T
Sbjct: 1080 VNAVVEIVKENYLVLSIPENDYTIGYASVSDYNAQRFPHKQYQNGQSVVATVMALPSPET 1139

Query: 900  AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 959
            +GRLLLL   ++ T +S   + K      VG+LV+AEIT+IK LEL+LKFG G HGRIHI
Sbjct: 1140 SGRLLLLPNEVNGTSSSKRTKKKSSYK--VGTLVEAEITDIKTLELKLKFGFGLHGRIHI 1197

Query: 960  TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD-MKKSFLWELSIKPSMLT-VSEIG 1017
            TEV +   +V+EN FS +K+GQTVTARI+AK N+ D  +K   WELS++  M+T  S+I 
Sbjct: 1198 TEVQN--GSVLENPFSCYKVGQTVTARIVAKPNESDGNRKGSQWELSVRSEMVTGSSDID 1255

Query: 1018 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1077
               + E  +  IGQ V GYVYKV++EW  LTISR+++AQL+ILDSA EPSEL++FQ R+H
Sbjct: 1256 D--VSENLEFKIGQCVAGYVYKVESEWIWLTISRNVRAQLYILDSAIEPSELEDFQNRYH 1313

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQD---GISDKT-VDISNDNMQTFIHEGDIVGGRI 1133
            +G+ V+GHVLS+N EKKLLRLV+RPF     G S++  +++ +  +    HEGDI+GGR+
Sbjct: 1314 VGQPVSGHVLSVNMEKKLLRLVVRPFSTLPCGTSEEPHINVVDKGLTAHFHEGDILGGRV 1373

Query: 1134 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            SKIL  VGGL+VQ+GP  YG+VHFTEL +  V DPL           SGY EGQFVKC V
Sbjct: 1374 SKILPSVGGLLVQVGPRTYGKVHFTELADTLVPDPL-----------SGYHEGQFVKCVV 1422

Query: 1194 LEISRTVRGTFHVELSLRSS 1213
            LE+S TV+GT HV+LSLRSS
Sbjct: 1423 LEVSHTVKGTIHVDLSLRSS 1442



 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/573 (70%), Positives = 474/573 (82%), Gaps = 12/573 (2%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K +EKIEDL P+MIV+GY+KNVT KGCFIMLSRK+DAK+LLSNLS+ YV+  EKEFPIGK
Sbjct: 1609 KCVEKIEDLHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGK 1668

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
            LV GRV+SVEPLS RVEVTLKTS      +SEI +LS  HVGD++ G+IKRVES+GLFI 
Sbjct: 1669 LVIGRVISVEPLSNRVEVTLKTSTDPNIPKSEIIDLSKFHVGDVISGRIKRVESFGLFIA 1728

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
            I+NTN+VGLCHVSE+S++ ++NIE  YRAGE+V  +ILKVD+E+ RISLGMK+SY + D 
Sbjct: 1729 IDNTNMVGLCHVSEISDNRIENIEANYRAGERVNARILKVDEERHRISLGMKNSYMR-DE 1787

Query: 1414 DNLQMSSEEESDEAIEE----VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRA 1469
              LQ+ SEEESDE I +    + S N SSLL  S++     D+E E     +L+Q++ RA
Sbjct: 1788 TMLQIPSEEESDEPITDGMKSITSMN-SSLLGTSNI-----DVEDEINQFPILSQVQQRA 1841

Query: 1470 SVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEER 1528
             +PPL+V LDD +Q D++N  SQ++ H +E   ++EK+ R  KKK KEERE++IRAAEER
Sbjct: 1842 DIPPLDVPLDDFDQFDVNNTNSQSEEHANEEDIVNEKHKRREKKKAKEEREKQIRAAEER 1901

Query: 1529 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1588
            LLE D PRT DEFE+L+RSSPNSSF WIKYM FM+SM DVEKARSIAERAL+TINIREEN
Sbjct: 1902 LLEDDVPRTADEFEKLIRSSPNSSFTWIKYMDFMVSMVDVEKARSIAERALRTINIREEN 1961

Query: 1589 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1648
            EKLNIW AYFNLEN+YGNP EEAV+KVFQRALQY DPKKV+LALLG+YERTEQ+ LADEL
Sbjct: 1962 EKLNIWKAYFNLENKYGNPREEAVMKVFQRALQYNDPKKVYLALLGMYERTEQHNLADEL 2021

Query: 1649 LYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
            L KM KKFKHSCKVWLRR+Q LLKQ Q+G+Q V+ RA LSLP+HKHIKF SQTAILEFK 
Sbjct: 2022 LNKMTKKFKHSCKVWLRRIQSLLKQNQDGIQPVIDRASLSLPKHKHIKFFSQTAILEFKV 2081

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1768
            GV DRGRSMFE IL EYPKRTDLWS+YLDQEI+  D D+IR LFERA+SLSLPPKKMKFL
Sbjct: 2082 GVLDRGRSMFEKILREYPKRTDLWSVYLDQEIQHKDKDIIRALFERAVSLSLPPKKMKFL 2141

Query: 1769 FKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            FKKYL YEKS G+EERIE VK+KAMEYVEST A
Sbjct: 2142 FKKYLYYEKSQGDEERIESVKRKAMEYVESTRA 2174



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 136/589 (23%), Positives = 249/589 (42%), Gaps = 111/589 (18%)

Query: 884  GQSVIATVMALPSSSTAGRLLLLLK--AISETETS--------------------SSKRA 921
            GQSV + +  +  SS  GR+ L LK  A S T+ S                     +  +
Sbjct: 916  GQSVRSNISNV--SSETGRVTLSLKQTACSSTDASFIQDYFLMDDKIAKLQYWGSGASDS 973

Query: 922  KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI-- 979
            K    +++G + + ++ +++ + L + F               +K N V    +N+++  
Sbjct: 974  KWDEGFNIGMVAKGKVKDVEDVGLAISF---------------EKHNDVFGFIANYQLAG 1018

Query: 980  -----GQTVTARI--IAKSNKPDMKKSFLWELSIKPSML------TVSEIGSKLLFEEC- 1025
                 G  V A +  +AK++K       L EL++KP  +      + S    K    E  
Sbjct: 1019 TILESGSVVEALVLDVAKADK-------LVELTLKPEFINRSKESSTSHTNKKKRRREAS 1071

Query: 1026 -DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-QRRFHIGKAVT 1083
             D+ + Q V   V  V   + +L+I  +     +   S Y     Q F  +++  G++V 
Sbjct: 1072 KDLVLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNA---QRFPHKQYQNGQSVV 1128

Query: 1084 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1143
              V+++   +   RL+L P +    + T        ++    G +V   I+ I +    L
Sbjct: 1129 ATVMALPSPETSGRLLLLPNE---VNGTSSSKRTKKKSSYKVGTLVEAEITDIKTL--EL 1183

Query: 1144 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1203
             ++ G  L+GR+H TE++N  V +          +P S Y  GQ V  +++       G 
Sbjct: 1184 KLKFGFGLHGRIHITEVQNGSVLE----------NPFSCYKVGQTVTARIVAKPNESDGN 1233

Query: 1204 ---FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                  ELS+RS +   SS        D+D   ++LE          V GYV  V S+  
Sbjct: 1234 RKGSQWELSVRSEMVTGSS--------DIDDVSENLE----FKIGQCVAGYVYKVESEWI 1281

Query: 1261 FIMLSRKLDAK--VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK---T 1315
            ++ +SR + A+  +L S +    +E  +  + +G+ V+G VLSV    K + + ++   T
Sbjct: 1282 WLTISRNVRAQLYILDSAIEPSELEDFQNRYHVGQPVSGHVLSVNMEKKLLRLVVRPFST 1341

Query: 1316 SDSRTASQSEINNL-----SNLHVGDIVIGQIKRV-ESYGLFITIENTNLVGLCHVSELS 1369
                T+ +  IN +     ++ H GDI+ G++ ++  S G  +        G  H +EL+
Sbjct: 1342 LPCGTSEEPHINVVDKGLTAHFHEGDILGGRVSKILPSVGGLLVQVGPRTYGKVHFTELA 1401

Query: 1370 EDHVDNIETIYRAGEKVKVKILKVD---KEKRRISLGMKSSYFKNDADN 1415
            +  V +  + Y  G+ VK  +L+V    K    + L ++SS  K   D+
Sbjct: 1402 DTLVPDPLSGYHEGQFVKCVVLEVSHTVKGTIHVDLSLRSSNVKLSQDS 1450



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            D+ P M+V+  + +V S G  + +   + A   L ++S+  +  P K+F +G  +  RVL
Sbjct: 613  DVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEISKPGKKFKVGAELVFRVL 672

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
              +  SKRV VT K    +T  +S+   I++ ++   G I  G I ++E +G F+   N 
Sbjct: 673  GCK--SKRVTVTHK----KTLVKSKLGIISSYADATDGLITHGWITKIEVHGCFVRFYN- 725

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
             + G    SEL  +   +  T+Y  G+ VK +++      RRI+L
Sbjct: 726  GVQGFAPRSELGLEPGADPGTVYNVGQVVKCRVISCIPASRRINL 770



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 1008 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
            P  + V    SK + +  D+     V GY+  V  +   + +SR + A+  IL S     
Sbjct: 1598 PKSIVVRNANSKCVEKIEDLHPDMIVKGYIKNVTPKGCFIMLSRKIDAK--ILLSNLSEQ 1655

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT--VDISNDNMQTFIHE 1125
             +QE ++ F IGK V G V+S+      + + L+   D    K+  +D+S        H 
Sbjct: 1656 YVQELEKEFPIGKLVIGRVISVEPLSNRVEVTLKTSTDPNIPKSEIIDLSK------FHV 1709

Query: 1126 GDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDEGQ 1176
            GD++ GRI ++ S   GL + I   ++ G  H +E+ +  + +  + Y  G+
Sbjct: 1710 GDVISGRIKRVES--FGLFIAIDNTNMVGLCHVSEISDNRIENIEANYRAGE 1759



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 31/192 (16%)

Query: 625  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
            +HP+ +V GY+ N+   GCF+    ++      S   +    +L K + +G+ V   ++ 
Sbjct: 1617 LHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGKLVIGRVIS 1676

Query: 685  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
            V   + R+ ++LK    +STD +  +                   SE+  +  F +G VI
Sbjct: 1677 VEPLSNRVEVTLK----TSTDPNIPK-------------------SEIIDLSKFHVGDVI 1713

Query: 745  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
             G++     FG+ ++  +++++ G     +++   +E       +G  + A IL V +  
Sbjct: 1714 SGRIKRVESFGLFIAI-DNTNMVGLCHVSEISDNRIENIEANYRAGERVNARILKVDEER 1772

Query: 798  RLVDLSLKTVFI 809
              + L +K  ++
Sbjct: 1773 HRISLGMKNSYM 1784



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 361  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
            D+ P M+VKG +  V   G  +     + A   L ++SE  + +  K+F +G  ++ RV+
Sbjct: 1616 DLHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGKLVIGRVI 1675

Query: 421  GVK--SKRITVTHKKT----LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 473
             V+  S R+ VT K +    + KS++  LS +       +  G I ++E  G F+   N 
Sbjct: 1676 SVEPLSNRVEVTLKTSTDPNIPKSEIIDLSKFHVGD---VISGRIKRVESFGLFIAIDNT 1732

Query: 474  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 533
             + G    SE+  +      + Y  G+ V  RI+       RI+L   MK + + ++ ++
Sbjct: 1733 NMVGLCHVSEISDNRIENIEANYRAGERVNARILKVDEERHRISLG--MKNSYMRDETML 1790

Query: 534  KLGS 537
            ++ S
Sbjct: 1791 QIPS 1794



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 31/195 (15%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            I  + PN +V GY+ N+   GCF+     L      +  +D    +  + + IG+ V   
Sbjct: 863  INQIHPNSVVHGYICNLIESGCFVRFLGHLTGFAPRNKAADDQKSNILEAYYIGQSVRSN 922

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNL-----------------------SNLHVG 1335
            + +V   + RV ++LK +   +   S I +                           ++G
Sbjct: 923  ISNVSSETGRVTLSLKQTACSSTDASFIQDYFLMDDKIAKLQYWGSGASDSKWDEGFNIG 982

Query: 1336 DIVIGQIKRVESYGLFITIENTN-LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1394
             +  G++K VE  GL I+ E  N + G     +L+        TI  +G  V+  +L V 
Sbjct: 983  MVAKGKVKDVEDVGLAISFEKHNDVFGFIANYQLA-------GTILESGSVVEALVLDVA 1035

Query: 1395 KEKRRISLGMKSSYF 1409
            K  + + L +K  + 
Sbjct: 1036 KADKLVELTLKPEFI 1050


>gi|12322020|gb|AAG51058.1|AC069473_20 rRNA biogenesis protein, putative, 3' partial; 75505-85642
            [Arabidopsis thaliana]
          Length = 1396

 Score = 1575 bits (4077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 799/1313 (60%), Positives = 1005/1313 (76%), Gaps = 61/1313 (4%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MKL GVV EVN+KD+VI LPGGLRGL RA++  D   D  IE +E+ LL  IF VGQLV 
Sbjct: 129  MKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVP 187

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
            CIVL+LDDDKKE GKRKIWLSLRLSLL+KG S ++ Q GMV +A VKSIEDHG ILHFGL
Sbjct: 188  CIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGL 247

Query: 121  PSFTGFLP-RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG 179
            PS TGF+   ++  + SG+  K G L+QGVV  IDR RK+V+LSSDPD+V+KC+TKDL G
Sbjct: 248  PSITGFIEISDDGNQESGM--KTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSG 305

Query: 180  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 239
            +S DLL+PGMMV+ RVQS+LENG++  FLTYF GTVD+FHL+N     +WK++YNQ+K V
Sbjct: 306  MSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTV 365

Query: 240  NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 299
            NARILF+DP+SRAVGLTL+P+++ N+APP HV  GDI+D++KVVR+D+  GLLL++PS P
Sbjct: 366  NARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKP 424

Query: 300  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 359
              TPAYV+  D A +EV KLEKK+KEG+ +RVR+LG + +EGLA G LK SAFEG VFTH
Sbjct: 425  TPTPAYVSTYDAAGDEVTKLEKKFKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTH 484

Query: 360  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
            SDVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRV
Sbjct: 485  SDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRV 544

Query: 420  LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
            LG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF 
Sbjct: 545  LGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFV 604

Query: 480  PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLV 539
            PR ELGL+PG +P S++HVG+VVKCR+ S++  ++RI LSFM+KP+ VSEDD +KLGS+V
Sbjct: 605  PRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSEDDSIKLGSIV 664

Query: 540  SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 599
            SG++D +T  AV+V V +K   KGTI  EHLADH E A ++ S+++PGYE D+LLVLD E
Sbjct: 665  SGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIE 724

Query: 600  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
             +N+ LS+KYSLI  A++LPSD + + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSK
Sbjct: 725  GNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSK 784

Query: 660  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 719
            A+D  +AD+S++++VGQSVR+NI+DVN E  RITLSLKQS C+S DASF+QE+FL++EKI
Sbjct: 785  AIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKI 844

Query: 720  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 779
            + LQSS    S+  WVE F IGS+I+G + E ND GVVV+F+  ++V GFI  H + GAT
Sbjct: 845  SDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGAT 904

Query: 780  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 839
            +  GSV+ A +LD+++AERLVDLSL+   ++   +  SN  + KKKRKR  SK+L VHQ 
Sbjct: 905  LVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQR 962

Query: 840  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 899
            V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF  GQSV+A+V A+ +  T
Sbjct: 963  VSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLT 1022

Query: 900  AGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 958
            +GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AE                      
Sbjct: 1023 SGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAE---------------------- 1060

Query: 959  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIG 1017
               VND  ++  +  F+ F++GQ+++AR++AK    D+KK+ LWELS+KP+ML   SE  
Sbjct: 1061 ---VND--ASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN 1115

Query: 1018 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1077
                 E+ + + GQ V GYVYKVD EW  L +SR++ A++FILD++ +  EL+EF+RRF 
Sbjct: 1116 DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP 1175

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQTFIHEG 1126
            IGKAV+G+VL+ NKEKK LRLV RP         +G   KT      I  D+   FIHEG
Sbjct: 1176 IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG 1235

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            DI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ +  V DP           L G+ EG
Sbjct: 1236 DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDP-----------LDGFREG 1284

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSP 1244
            QFVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL  + D   K  E+IEDLSP
Sbjct: 1285 QFVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSP 1343

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            +M VQGYVKN  SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV G
Sbjct: 1344 DMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTG 1396



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 200/926 (21%), Positives = 365/926 (39%), Gaps = 171/926 (18%)

Query: 542  VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESS 601
            V+ V T  A+V +    G  K   P  H+++     T  +   K G E     VL  +S 
Sbjct: 497  VISVDTFGAIVQF---SGGLKAMCPLRHMSEF--EVTKPRKKFKVGAEL-VFRVLGCKSK 550

Query: 602  NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 661
             + ++ K +L+ S   + S  +      V HG++  I + GCFVRF   + GF PR +  
Sbjct: 551  RITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELG 610

Query: 662  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 721
                +D    ++VG+ V+  +      T RITL            SFM           +
Sbjct: 611  LEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITL------------SFM-----------I 647

Query: 722  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 781
              SS      +K      +GS++ G +       V+V  +  S V G I+   LA    E
Sbjct: 648  KPSSVSEDDSIK------LGSIVSGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHH-E 700

Query: 782  SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK---KRKREASKDLGVHQ 838
               +I + +    + ++L+ L +         E N+   + K    K   E   D    Q
Sbjct: 701  QAKLIMSLLRPGYELDKLLVLDI---------EGNNMALSSKYSLIKLAEELPSDFNQLQ 751

Query: 839  ---TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY--NTQKFPQKQFLNGQSVIATV-- 891
                V+  V  + EN   +         G+A  S    + +    + F  GQSV A +  
Sbjct: 752  PNSVVHGYVCNLIENGCFVRF--LGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIVD 809

Query: 892  ---------MALPSSSTAG-------RLLLLLKAISETETSSSKRAKKK--SSYDVGSLV 933
                     ++L  SS A           L+ + IS+ ++S   ++       + +GSL+
Sbjct: 810  VNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGSLI 869

Query: 934  QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 993
            +  I E   L + + F              D+ +NV+  +  +   G T+    +  +  
Sbjct: 870  KGTIQEQNDLGVVVNF--------------DNINNVLGFIPQHHMGGATLVPGSVVNAVV 915

Query: 994  PDMKKS-FLWELSIKPSMLT-----VSEIGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1045
             D+ ++  L +LS++P +L      VS    K        ++ + QRV+  V  V  +  
Sbjct: 916  LDISRAERLVDLSLRPELLNNLTKEVSNSSKKKRKRGISKELEVHQRVSAVVEIVKEQHL 975

Query: 1046 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1105
            +L+I  H     +   S Y   +L    ++F  G++V   V          + V  P   
Sbjct: 976  VLSIPEHGYTIGYASVSDYNTQKLP--VKQFSTGQSVVASV----------KAVQNPLTS 1023

Query: 1106 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1165
            G     +D  +   +T   +      R  K  S   G VV             E+ +   
Sbjct: 1024 GRLLLLLDSVSGTSETSRSK------RAKKKSSCEVGSVVH-----------AEVNDAST 1066

Query: 1166 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLE--ISRTVRGTFHVELSLRSSLDGMSSTNSS 1223
            SD          +P + +  GQ +  +V+       ++ T   ELS++ ++      +SS
Sbjct: 1067 SD----------EPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAM----LKDSS 1112

Query: 1224 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-- 1281
            + +   DT  +  E++E  +    V GYV  V  +  ++ +SR + A++ + + S     
Sbjct: 1113 EFN---DT--QESEQLE-FAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHE 1166

Query: 1282 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT---------------SDSRTASQSEI 1326
            +E  E+ FPIGK V+G VL+     K + +  +                +D   +S    
Sbjct: 1167 LEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGD 1226

Query: 1327 NNLSNLHVGDIVIGQIKRVES--YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
            ++   +H GDI+ G+I ++     GL + +    + G  H +E+++  V +    +R G+
Sbjct: 1227 DDTLFIHEGDILGGRISKILPGVGGLRVQL-GPYVFGRVHFTEINDSWVPDPLDGFREGQ 1285

Query: 1385 KVKVKILKVDKEKR---RISLGMKSS 1407
             VK K+L++    +   +I L +++S
Sbjct: 1286 FVKCKVLEISSSSKGTWQIELSLRTS 1311



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            D+ P M+ +  V +V + G  +  S  L A   L ++S+  V  P K+F +G  +  RVL
Sbjct: 486  DVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVL 545

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1357
              +  SKR+ VT K    +T  +S++  LS   +   G +  G I ++E +G F+   N 
Sbjct: 546  GCK--SKRITVTYK----KTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYN- 598

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG--MKSSYFKNDADN 1415
             + G     EL  +   + ++++  GE VK ++       +RI+L   +K S    D D+
Sbjct: 599  GVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSED-DS 657

Query: 1416 LQMSS 1420
            +++ S
Sbjct: 658  IKLGS 662



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/212 (19%), Positives = 82/212 (38%), Gaps = 29/212 (13%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L PN +V GYV N+   GCF+    +L      S   D       + F +G+ V   ++ 
Sbjct: 750  LQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIVD 809

Query: 1302 VEPLSKRVEVTLKTS-----------------------DSRTASQSEINNLSNLHVGDIV 1338
            V     R+ ++LK S                        S   ++S+ + +    +G ++
Sbjct: 810  VNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGSLI 869

Query: 1339 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1398
             G I+     G+ +  +N N V    +  + + H+     +   G  V   +L + + +R
Sbjct: 870  KGTIQEQNDLGVVVNFDNINNV----LGFIPQHHMGGATLV--PGSVVNAVVLDISRAER 923

Query: 1399 RISLGMKSSYFKNDADNLQMSSEEESDEAIEE 1430
             + L ++     N    +  SS+++    I +
Sbjct: 924  LVDLSLRPELLNNLTKEVSNSSKKKRKRGISK 955



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 25/201 (12%)

Query: 1225 LSTDVDTPGKHLEKIEDLS--------PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1276
            LS+D D+  K L K  DLS        P M+V   V++V   G         +  V L +
Sbjct: 288  LSSDPDSVAKCLTK--DLSGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFH 345

Query: 1277 LSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV- 1334
            L +    +S + E+   K V  R+L ++P S+ V +TL       +     N    LHV 
Sbjct: 346  LKNPLSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTL-------SPHVVCNKAPPLHVF 398

Query: 1335 -GDIVI-GQIKRVESYGLFITIENTNLVGLCHVS--ELSEDHVDNIETIYRAGEKVKVKI 1390
             GDI    ++ R++  GL + + +       +VS  + + D V  +E  ++ G  ++V++
Sbjct: 399  SGDIFDEAKVVRIDKSGLLLELPSKPTPTPAYVSTYDAAGDEVTKLEKKFKEGNHIRVRV 458

Query: 1391 LKVDKEKRRISLG-MKSSYFK 1410
            L + K+   +++G +K S F+
Sbjct: 459  LGL-KQMEGLAVGTLKESAFE 478


>gi|449519617|ref|XP_004166831.1| PREDICTED: protein RRP5 homolog, partial [Cucumis sativus]
          Length = 1323

 Score = 1513 bits (3917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 810/1343 (60%), Positives = 1003/1343 (74%), Gaps = 72/1343 (5%)

Query: 481  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 540
            R ELG++PG +PSS YH+GQV+KCRI SS  +S+RI+LSF+MKP RVSED  V+LG +V+
Sbjct: 31   RFELGIEPGSDPSSTYHIGQVIKCRITSSTHSSKRISLSFVMKPARVSEDTKVELGCIVT 90

Query: 541  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 600
            GVVD +T   V +Y+    YS+G I TEHL+DH  HA+ +KSV+KPGY+FDQLLVL  E 
Sbjct: 91   GVVDEITETHVTLYINRTDYSRGRISTEHLSDHQAHASSIKSVLKPGYQFDQLLVLAIEG 150

Query: 601  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 660
             +L+LSAK SLI  A  LPSD+SH++P S++HG++CNIIE GCFVRFLGRLTGF+PR+KA
Sbjct: 151  ESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICNIIEAGCFVRFLGRLTGFSPRNKA 210

Query: 661  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 720
            +  Q+ DL +TYY+GQSVRSN++DV+ ETGRITLSLKQS C STDASF+QE F  EEKIA
Sbjct: 211  MQDQKLDLRETYYIGQSVRSNVVDVSGETGRITLSLKQSTCFSTDASFIQEFFSTEEKIA 270

Query: 721  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 780
             LQS      E  W E F IGSV+EG+V E  D GV +SFE++ DV+GFI  H L+G+ V
Sbjct: 271  KLQSL----DESNWAEEFAIGSVVEGEVQEVKDIGVTISFEKYHDVFGFIALHGLSGSIV 326

Query: 781  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 840
            E+GS IQAA+LDV+K ERLVDLSLK   +D+++  +S+RQ  +KKRK EA KDL ++QTV
Sbjct: 327  ETGSTIQAAVLDVSKTERLVDLSLKPELVDKWKGGSSSRQTNRKKRKAEAPKDLEMNQTV 386

Query: 841  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 900
            + +VE VKENYLVLSLPE+ H+IGYAS  DYNTQ+  QK F  GQSV+ATV+ALP  ST 
Sbjct: 387  HTVVEAVKENYLVLSLPEFGHAIGYASTYDYNTQRLHQKHFTVGQSVVATVVALPCPSTF 446

Query: 901  GRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 959
            GRLLLLLK+ISE   T  SKR++K SS +VGSLV AE++                     
Sbjct: 447  GRLLLLLKSISEAIVTPGSKRSRKNSSCEVGSLVHAEVSNTP------------------ 488

Query: 960  TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLT-VSEIG 1017
                D+ S   E  FSNF++GQTV ARI+A++N    K K +LWELS+KP +L   S +G
Sbjct: 489  ----DEAS---EAPFSNFRVGQTVVARIVAEANHSASKVKGYLWELSVKPEVLKDFSAVG 541

Query: 1018 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1077
             +++ E+   SIGQRVT YV  V+ +WA L ++R + AQLFILDS+ EPSELQEF + F+
Sbjct: 542  GEIVNEDLGFSIGQRVTAYVSNVNGDWAWLAVTRRVSAQLFILDSSSEPSELQEFSKHFY 601

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLR---PFQDGISD----KTVDISNDNMQTFI---HEGD 1127
            +GKAV+G++ +I  EKK+LRLVL        G SD    K  ++  D  +  I   +EGD
Sbjct: 602  VGKAVSGYISNIIGEKKILRLVLHHLSAISSGKSDQENSKISNLPTDVCKKVICHLNEGD 661

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            IVGGRISKIL GVGGL+VQIGPHL+GRVH+TEL +  V DPLSGY E           GQ
Sbjct: 662  IVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPLSGYKE-----------GQ 710

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
            FVKCKV+EI+  V+GT H++LSLRSS   +   N    + +    G+   KIED+  +M 
Sbjct: 711  FVKCKVIEITHAVKGTTHIDLSLRSSAGILCQKNIECSNHENIASGR--VKIEDIHAHME 768

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            VQGYVKN++ KGCFIMLSR L+AK+LLSNLSDGY+++PEKEFP GKLV GR+LSVEPLSK
Sbjct: 769  VQGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEFPTGKLVRGRILSVEPLSK 828

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
            RVEVTLK+     A +   N+L +   GDI+ G+IKRVES+GLFI+I+NT++VGLCHVSE
Sbjct: 829  RVEVTLKSVTETGALRGSNNDLRSFSAGDIISGRIKRVESFGLFISIDNTDVVGLCHVSE 888

Query: 1368 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +S+D V+++E  Y AG+ VK K+LKVD+++ RI+LGMK SY   +   L  + EEE ++A
Sbjct: 889  VSDDPVESLEFRYHAGDTVKAKVLKVDEKRHRIALGMKRSYI-GERSELCTNMEEEHEDA 947

Query: 1428 IEE---VGSYNRSSLLENSSVAVQDM-----DMESEDGGSLVLAQIESRASVPPLEVNLD 1479
             +    +G    S   ++SS   +DM     ++E E    L LA  ESRA VP LEV LD
Sbjct: 948  ADGDNFIGETRLSMDPDSSSTKFKDMDDDFDNIEPEQ--PLRLA--ESRALVPSLEVTLD 1003

Query: 1480 D-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTP 1538
            D ++ DM    S+N+  T    +  EKN+R  KKK KEERE E+RAAEERLL+ ++P T 
Sbjct: 1004 DIDETDMVTLQSENKELTSGTDS-KEKNDRREKKKAKEEREMEVRAAEERLLQNNSPTTV 1062

Query: 1539 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1598
            DEFE+LVRSSPNSSFVWIKYM F    ADVEKARSIAERAL+TINIREENEKLN+W+AYF
Sbjct: 1063 DEFEKLVRSSPNSSFVWIKYMDFF--KADVEKARSIAERALRTINIREENEKLNVWLAYF 1120

Query: 1599 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658
            NLENEYGNP E+AV K+FQRALQ  DPKKVHLALLG+YERT Q+ LADELL KMIK+FKH
Sbjct: 1121 NLENEYGNPKEDAVTKIFQRALQCNDPKKVHLALLGMYERTNQDNLADELLDKMIKRFKH 1180

Query: 1659 SCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1718
            SCKVWLRR++ L K++Q  +Q++V RALL LP+ KHIK+ISQTAILEFK GVADRGRSMF
Sbjct: 1181 SCKVWLRRMESLFKKKQVEIQSIVNRALLCLPKRKHIKYISQTAILEFKCGVADRGRSMF 1240

Query: 1719 EGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1778
            EGIL EYPKRTDLWSIYLDQEIRLGD D+IR LFERAISLSL PKKMKFLFKKYLEYEKS
Sbjct: 1241 EGILREYPKRTDLWSIYLDQEIRLGDKDMIRALFERAISLSLAPKKMKFLFKKYLEYEKS 1300

Query: 1779 VGEEERIEYVKQKAMEYVESTLA 1801
            VG+EERIE VKQKA+EYVE+TLA
Sbjct: 1301 VGDEERIESVKQKALEYVENTLA 1323



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 5/119 (4%)

Query: 402 IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 461
           ++KPG +F         VL ++ + + ++ K++L+K    + S  +      I HG+I  
Sbjct: 133 VLKPGYQFDQ-----LLVLAIEGESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICN 187

Query: 462 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           I + GCFVRF   + GF+PR++   D   +    Y++GQ V+  ++     + RI LS 
Sbjct: 188 IIEAGCFVRFLGRLTGFSPRNKAMQDQKLDLRETYYIGQSVRSNVVDVSGETGRITLSL 246



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 121/288 (42%), Gaps = 39/288 (13%)

Query: 270 HVKVGDIYDQSKVVRVDRGLG-LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 328
           H+  GDI    ++ ++  G+G LL+ I         Y  ++D     V      YKEG  
Sbjct: 656 HLNEGDIVG-GRISKILPGVGGLLVQIGPHLFGRVHYTELTDCL---VPDPLSGYKEGQF 711

Query: 329 VRVRILGFRHLEGLATGI---LKASAFEGLVF-------THSDVKPG----------MVV 368
           V+ +++   H     T I   L++SA  G++         H ++  G          M V
Sbjct: 712 VKCKVIEITHAVKGTTHIDLSLRSSA--GILCQKNIECSNHENIASGRVKIEDIHAHMEV 769

Query: 369 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKR 426
           +G V  +   G  +    G++A   L ++S+  I  P K+F  G  +  R+L V+  SKR
Sbjct: 770 QGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEFPTGKLVRGRILSVEPLSKR 829

Query: 427 ITVTHKKTLVKSKLA----ILSSYAEATDRLITHGWITKIEKHGCFVRFYN-GVQGFAPR 481
           + VT K       L      L S++ A D  I  G I ++E  G F+   N  V G    
Sbjct: 830 VEVTLKSVTETGALRGSNNDLRSFS-AGD--IISGRIKRVESFGLFISIDNTDVVGLCHV 886

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 529
           SE+  DP       YH G  VK +++       RI L   MK + + E
Sbjct: 887 SEVSDDPVESLEFRYHAGDTVKAKVLKVDEKRHRIALG--MKRSYIGE 932


>gi|168031842|ref|XP_001768429.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680354|gb|EDQ66791.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1785

 Score = 1459 bits (3776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 817/1860 (43%), Positives = 1177/1860 (63%), Gaps = 134/1860 (7%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MK+WG VAE+N KD+VI LPGGLRG   A +A      +E+  NE  LL  +F VGQLV+
Sbjct: 1    MKIWGAVAEINNKDMVISLPGGLRGFVLAEEA------SEVFENEVPLLSDLFSVGQLVA 54

Query: 61   CIV--LQLDDDKKEIGK-----------RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
            C V  L+L  +KK  GK           R+I LSL+L  LY GLS+E V EG  LTA V 
Sbjct: 55   CTVRKLELTQEKKGRGKPEKEGKNEKRGRRIELSLKLGYLYDGLSIEAVYEGQALTAVVT 114

Query: 108  SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 167
            SIEDHGY+L FG+P+ +GFL   N  + +   ++ G L+QGVV S+D+ R  V L +D  
Sbjct: 115  SIEDHGYLLSFGVPAVSGFLLHRNYLDGTS-KLRTGQLVQGVVISVDKKRGAVGLKADLG 173

Query: 168  TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 227
             +S  + K+  G++++LL PG MV+ RV+S+L+NG++LSFLTYFTGTVDIFHL++  P  
Sbjct: 174  LISSNMVKEFAGLTVELLTPGAMVNARVRSVLKNGLLLSFLTYFTGTVDIFHLEDPLPGA 233

Query: 228  NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR 287
            +W   Y++++++ ARIL++DP ++ +GLTLNP LL+N  P   V VGD++  + V RVD 
Sbjct: 234  DWNTKYSENQRLKARILYIDPVAKTIGLTLNPQLLNNVLPSMSVDVGDVFKDAIVRRVDA 293

Query: 288  GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 347
             +G+LL++P+       Y  IS V++E + KLEKKY  G  VR R++G R ++ LA   L
Sbjct: 294  TIGMLLELPTKENVVAGY--ISSVSDEHIAKLEKKYTVGKKVRARVIGHRVMDALAIASL 351

Query: 348  KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
            K S  + L+ +H+DV+P M V G VIAV+ +GA+VQ   GVKALCPL HMSEF+   P  
Sbjct: 352  KESVVDQLLLSHADVQPAMNVTGTVIAVEPYGALVQLAEGVKALCPLQHMSEFQRSNPSS 411

Query: 408  KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 465
            KF+VG++L FRVL     +K+IT+THKKTL+ SKL+ + SY  A + L+THG+IT IE  
Sbjct: 412  KFQVGSKLKFRVLSCDHHAKKITLTHKKTLITSKLSPIVSYESAVEGLVTHGFITGIEDI 471

Query: 466  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
            GCFV FYN V+G   +S LG++ G +  +++ VGQ +KCR++ S PA+RR++LSF+   +
Sbjct: 472  GCFVSFYNDVKGLVHKSALGIEAGVKAENVFQVGQSIKCRVLRSDPAARRLSLSFITTSS 531

Query: 526  R------VSEDDLVKLGSLVSGVVDVVTPNAVVVYV-IAKGYSKGTIPTEHLADHLEHAT 578
            R       + D+L+  G +V+G V  V  + ++V V    G  KG +   HL+D L H  
Sbjct: 532  RDDASEGAAGDELI--GKVVAGTVHHVNDSVIIVNVSTPTGLVKGYLTFPHLSDTLGHIE 589

Query: 579  VMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 637
             +KSV K G++FD+LLVLD  +   L++SAK SL+ +A  LPSD S + P SV+ GYV N
Sbjct: 590  QLKSVTKVGFQFDRLLVLDVTDKQKLIVSAKQSLLQAASSLPSDISQLQPQSVIPGYVAN 649

Query: 638  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            I + GCFVRFLGRLTG A   +  D   +D S  + VGQSVR+ +L+V  +TG+ +L LK
Sbjct: 650  ITDRGCFVRFLGRLTGLASVPQVADEFVSDPSNHFSVGQSVRAQVLEVYHDTGKFSLCLK 709

Query: 698  QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 757
            QS C STD S +Q +FL E+KI          S+L+W +   IG+   G+V E  D+GV+
Sbjct: 710  QSVCFSTDVSLIQGYFLEEDKIV----EASEASDLEWAKTLAIGACTGGEVQEIKDYGVI 765

Query: 758  VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 817
            V    + DV GF+TH+QL G  VE G  +QA +LDV KA+R+VDL+++   + +  + +S
Sbjct: 766  VKLPNYKDVVGFVTHYQL-GTPVEVGDSVQARVLDVVKADRIVDLTVRPELL-QVNKHDS 823

Query: 818  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 877
             ++ +K K++      L +HQ V+A++E+VK+ YLVLSLPE  ++IG+A+  DYN+++  
Sbjct: 824  TKKKEKNKKRSHPVMALELHQKVSAVIELVKDAYLVLSLPEQGNAIGFAAAGDYNSRRQD 883

Query: 878  QKQ-FLNGQSVIATVMALPSSSTAGRLLLLLKAIS---ETETSSSKRAKKKSSYDVGSLV 933
              Q +  GQ V+ATV  L   +   R+LLLL       E +TS++K+ +++    +G++V
Sbjct: 884  SHQRYSPGQRVVATVEHLGDETNGNRMLLLLSNTGDSVEVKTSNTKKPRRELDKLIGAIV 943

Query: 934  QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ-----TVTARII 988
             AEI +            GF  +               N  S+F IGQ      V    +
Sbjct: 944  DAEIID------------GFEEK---------------NPLSSFNIGQKVRCRVVQRVRL 976

Query: 989  AKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1047
             KS     + S L ELS++PS L+  +  GS    EE  +  GQ +T YV +V ++WA L
Sbjct: 977  QKSPGRKERTSVL-ELSLRPSQLSGYTRPGSLPSLEE--LVPGQCITAYVQEVKDDWAWL 1033

Query: 1048 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR------ 1101
            +++ HL+ +LFILDS+ +PSEL++F  RF +G  V+  V S++ EK+ L  + R      
Sbjct: 1034 SVAPHLRGRLFILDSSTDPSELEKFAERFTVGTPVSCCVKSVDYEKRTLDFIRRQPPQLQ 1093

Query: 1102 --------PFQDGISDKTVDISNDNMQTF-IHEGDIVGGRISKILSGVGGLVVQIGPHLY 1152
                    P +D  S       N+  Q F I +GD +GGR+ ++  GVGG+ VQI P  +
Sbjct: 1094 EKSLFDVPPMEDADSSS----ENNTKQVFWIQKGDSLGGRVKQVNPGVGGISVQIAPSSF 1149

Query: 1153 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1212
            GRVH T L            DE + +P S + EGQFV+C VL + +   G   ++L+LR 
Sbjct: 1150 GRVHVTHLS-----------DEWKDNPASAFKEGQFVRCVVLGVEKNPNGKTVIDLTLRK 1198

Query: 1213 SLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1270
            SL GM + N  +SD +T           I+ L   +++QG+VK+ + KGCFI L+ ++DA
Sbjct: 1199 SLGGMVAANLQASDSAT-TRCVKFQCRTIKPLC--LVLQGFVKSTSKKGCFISLAPQVDA 1255

Query: 1271 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI--NN 1328
             VL  NLS  +V+ P + FP GKL+ GR+++++    RVE++LKTS  +    S +    
Sbjct: 1256 IVLTCNLSKAFVKDPAESFPPGKLIKGRIINIDADLGRVEMSLKTSGQKKELTSTLLGRR 1315

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
              +   G++V G IKR+E +G+F+TIE +++V +CH+SE+++ +  +I+  Y+ G++V+ 
Sbjct: 1316 FGDFKEGEVVFGTIKRIEKFGIFVTIEQSSVVTMCHMSEVADHYFKDIDKHYKVGDRVRA 1375

Query: 1389 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQ 1448
            ++LKVD  K+RISLG+K SYF N   ++Q  +EE+  +   E        L+++   + +
Sbjct: 1376 RVLKVDNTKQRISLGLKESYFSNTETHVQPVTEEDDMKVTNE-----EDELVDDCEESEE 1430

Query: 1449 DMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNR 1508
            D   E     S      E   + PPLEV+L+D      N +  ++   DE     +K N+
Sbjct: 1431 DDVDEENLEDSKGTPSDEGNLNTPPLEVDLEDT-----NVVDDSEKEEDEESEDAKKLNK 1485

Query: 1509 HAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD 1567
             AKK+ K++RE EI AAEER L+ D AP T DEFE LVR+SPNSS VWIKYMAF+L +AD
Sbjct: 1486 RAKKRLKQQREAEISAAEERRLKGDQAPETVDEFEALVRTSPNSSLVWIKYMAFLLQLAD 1545

Query: 1568 VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1627
            V+KAR+IAERALQTIN REE EKLN+W+AY NLEN YGNPP+EAV+ +F RALQY D KK
Sbjct: 1546 VDKARAIAERALQTINYREEMEKLNVWIAYLNLENVYGNPPKEAVLTLFNRALQYNDQKK 1605

Query: 1628 VHLALLGLYERTEQNK-----LADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAV 1681
            ++ ALLG+YE   Q K     + D+++  MI+KFK S KVWL+++Q L+++    V    
Sbjct: 1606 LYFALLGIYENPRQPKGPQYDMFDQMMKTMIRKFKSSAKVWLKQIQSLMERGMGDVAHKT 1665

Query: 1682 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1741
            + ++LLSLPR KHIK IS+ A+LE+K+G  +R RS+FEGIL  YPKRTDLWS+YLDQEIR
Sbjct: 1666 LDQSLLSLPRRKHIKVISRAALLEYKSGSVERARSIFEGILRNYPKRTDLWSVYLDQEIR 1725

Query: 1742 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            +G+V +IR +FE+   L LPP+KMKFLFKKYL+YEK+ G+EE+IE+VK+KAMEYV + L 
Sbjct: 1726 VGEVPVIRAIFEKVTCLELPPRKMKFLFKKYLDYEKANGDEEQIEHVKRKAMEYVNNKLG 1785


>gi|302780137|ref|XP_002971843.1| hypothetical protein SELMODRAFT_451253 [Selaginella moellendorffii]
 gi|300160142|gb|EFJ26760.1| hypothetical protein SELMODRAFT_451253 [Selaginella moellendorffii]
          Length = 1807

 Score = 1379 bits (3569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 775/1820 (42%), Positives = 1133/1820 (62%), Gaps = 130/1820 (7%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADAL---DPILDNEIEANEDNLLPTIFHVGQ 57
            M+LWG V+ +N+ DL I LP GL G  +  +A     P L ++ +     LL  +FHVGQ
Sbjct: 93   MRLWGAVSGINKTDLSISLPNGLHGFVKVDEAFPEYTPDLSDD-KGKCHLLLEELFHVGQ 151

Query: 58   LVSCIVLQLDDDKKEIGK---RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 114
             VSC +L L++ K +  K   R+  LSL      +G++++T+  G ++ + VKSIEDHGY
Sbjct: 152  YVSCTLLNLEETKGDGQKKQPRRAVLSLLPRHFNEGMTMDTIYVGQLMISSVKSIEDHGY 211

Query: 115  ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 174
            +L FGLP  +GFL   +   + G  ++ G ++Q  V +ID+ R V+ L++          
Sbjct: 212  VLSFGLPEMSGFLLHKD---HQGEKLRVGEIMQSCVSAIDKKRGVINLTT---MQLSSAM 265

Query: 175  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
            K+ + +S+  LVPG +V+  VQ+++ NGV+LSFLTYFTG VDIFHLQ+   + +W  DY 
Sbjct: 266  KEHENLSLGTLVPGALVNGCVQAVMRNGVLLSFLTYFTGIVDIFHLQSVLSSKDWAQDYT 325

Query: 235  QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 294
            + K+  ARI+F+D  ++ + L+L  +L+        +  GD+ + +++ RVD  +GLLL+
Sbjct: 326  EGKRFKARIIFIDARTKRIRLSLRSHLVDAEIVVPSLNRGDVIEAARIKRVDPAIGLLLE 385

Query: 295  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 354
            +P+TP     YV  +DV++  V KLEKK+K+G  V+ RI+GFR ++G+AT  LK S  +G
Sbjct: 386  LPATP-HVAGYVNHADVSDVNVDKLEKKFKDGQRVKARIIGFRLMDGMATLTLKESMVKG 444

Query: 355  LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 414
            +V    D+KPG +V G +  V++ GA+V   GGVK LCP+ HMSE+  +KP  KF+VG +
Sbjct: 445  VV-NKLDLKPGALVHGVITRVEACGALVSL-GGVKGLCPVQHMSEYNRLKPSSKFEVGKK 502

Query: 415  LVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 472
            + FRVL    + K++++T KK+LV SKL ++++Y +A D L+THGWI  I   GCF+ FY
Sbjct: 503  MKFRVLQYDHEKKKLSLTFKKSLVSSKLPLITAYEDAVDGLVTHGWIQGISNIGCFMEFY 562

Query: 473  NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSED 530
            N V+G   RSELG+ P     + +HVGQVVKCR++ S  + RR++LSF M  +P      
Sbjct: 563  NHVKGLVHRSELGIGPDTPIEAAFHVGQVVKCRVLESDLSKRRLSLSFNMSLRPG----- 617

Query: 531  DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 590
              VK GS+VS V+  +  + + + V     S  T+  EHL+D   HA  M+S++KPG++F
Sbjct: 618  --VKPGSVVSAVITQMGSSQIELQVNDDIAS--TMSYEHLSDTPVHAEQMRSLLKPGFKF 673

Query: 591  DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
            D+LLVL  E S L+L+AKYSLI++A+ LPS    + P +V+ GY+  I +  C V FL  
Sbjct: 674  DRLLVLGWEHSKLVLTAKYSLIDAAESLPSSIHQLSPMAVLPGYISVIHDKYCLVSFLDD 733

Query: 651  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
            +TG  P   A DG   DLS+ ++VGQSVR+ +L+V+SE  +  LSLKQS C STD S +Q
Sbjct: 734  VTGLVPIGNASDGYLEDLSQVFFVGQSVRAQVLEVDSENEKFVLSLKQSACFSTDVSLIQ 793

Query: 711  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
             +FL EE IA L+  +     L W     IG ++E  V E  D+G++++ ++++DV GF 
Sbjct: 794  GYFLEEELIAKLKEKEG----LDWGNKLQIGELVEADVQEVKDYGIILNLKDNADVVGFA 849

Query: 771  THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREA 830
            TH+Q + + VE G+ ++A ILDV K + +VDLSL+                 K  + ++ 
Sbjct: 850  THYQ-SDSPVEVGAAVKACILDVVKTDGIVDLSLQK----------------KMLKFKKT 892

Query: 831  SKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF-PQKQFLNGQSVIA 889
               L +HQ V  +VE+VK+ YLVLSLP++ +SIG+AS  DYN +   P   +  GQ   A
Sbjct: 893  KAVLQLHQRVEVVVELVKDEYLVLSLPKFGNSIGFASTRDYNIRVLRPHDHYSPGQKFSA 952

Query: 890  TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF 949
            T+ +  S S   R LLLL     T  +  K        D+G++++ +I EI  L + ++ 
Sbjct: 953  TIYSFGSESVGERTLLLLADTKPTFFTYVKN-------DIGAIIEGQIQEISSLHMIIQA 1005

Query: 950  GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK-------SNKPDMKKSFLW 1002
            GI   G +HITEV D       N    +  GQTV A+I++K        N P +      
Sbjct: 1006 GINLRGNVHITEVVDHYEE--GNPLRKYNAGQTVRAKILSKRKTSRKHGNAPTL------ 1057

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            +LS++PS LT ++    ++  E  V+IGQ V GYV +V   WA L +S HL+ +LFILDS
Sbjct: 1058 DLSLRPSELTGNDSARSVITFET-VTIGQTVVGYVQEVKENWAWLVLSPHLRGRLFILDS 1116

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            + +PSEL+ FQ RF +G A   H+ S+N EKK + L LRP  +                 
Sbjct: 1117 SDDPSELERFQERFKVGDAFQCHIRSVNHEKKQVDLSLRPKDEDFK-------------- 1162

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
              +GD++GGRI+++  G GGL VQ+G   +GRVH T L +  + DP S + EG+F     
Sbjct: 1163 --KGDLLGGRITRVRPGDGGLTVQVGWETFGRVHVTHLGDTWMDDPASLFTEGKF----- 1215

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS--SDLSTDVDTPGKHLEKIE 1240
                  V+C+VL++  T++GT  +ELSLR SL G     S  S  + +  +    +  + 
Sbjct: 1216 ------VRCRVLDLKPTLKGTKALELSLRPSLGGYGGFESLPSYQTLERKSNACIVNSVS 1269

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            +L  +M VQG+VK+VT KGCF++LS  +DA++LL NLS  +V++P + FP GKLV+GR+L
Sbjct: 1270 ELQQDMQVQGFVKDVTEKGCFVILSPSVDARILLKNLSSSFVQNPAEMFPAGKLVSGRIL 1329

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            SV PLS  VE++L TS        E ++      GDIV G+I+ +E++G+F+ + ++++V
Sbjct: 1330 SVRPLSGHVEMSLTTS-------QESSSWKTFCAGDIVSGRIRSIEAFGMFVALADSDVV 1382

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1420
            GLCHVSE+S+D + ++ T+Y+ G++V+VKILKVD E +RISLGMK+S+   D D L+   
Sbjct: 1383 GLCHVSEVSDDFIQDLPTLYKVGQRVQVKILKVDAETKRISLGMKASFLTPD-DGLETMD 1441

Query: 1421 EEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD 1480
            EE      EE  + N           + + D + ED   L          V PLEVNL++
Sbjct: 1442 EEP---VAEEPSTAN----------VLMETDEKEEDYLDLDTEATPMATDVDPLEVNLEE 1488

Query: 1481 EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPD 1539
               D+++ +         A+   +K  +  KK+ KE+RE  +RAAEE+ L+KD  P T D
Sbjct: 1489 ---DVEDKVPVEDEKPPTAEES-KKKTKKEKKRLKEQREAAVRAAEEKFLQKDQPPETED 1544

Query: 1540 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1599
            +FERLV +SPNSS+VWIKYMA+ L +AD +KAR++A+RAL+TIN REE EK+NIW AY N
Sbjct: 1545 DFERLVAASPNSSYVWIKYMAYWLRLADPDKARAVADRALETINYREEMEKMNIWTAYIN 1604

Query: 1600 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1659
            LEN Y   P EAV  +F+RA++YCDPKK+HL+LLG+YE T Q+++ D L+  M +KFK S
Sbjct: 1605 LENSYAPSPREAVSALFERAMKYCDPKKLHLSLLGVYESTNQHEMTDALMKSMTRKFKTS 1664

Query: 1660 CKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1718
             KVWLR V  LL +   +  +   ++A ++LPRHKHIKFIS+ AILEFK+G  +R R +F
Sbjct: 1665 TKVWLRHVSNLLGRGLSDKARKAFEQACVALPRHKHIKFISRAAILEFKSGSPERAREIF 1724

Query: 1719 EGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1778
            +G+L  YPK+TDLWS+YLDQEIRLGD  ++R LFERA  L LP KKMKFLFKKYL++EK 
Sbjct: 1725 DGVLRNYPKKTDLWSVYLDQEIRLGDTAIVRNLFERATCLDLPAKKMKFLFKKYLDFEKG 1784

Query: 1779 VGEEERIEYVKQKAMEYVES 1798
             G+E RIE+VK KAME+VE+
Sbjct: 1785 QGDETRIEHVKTKAMEFVEA 1804


>gi|6671953|gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, 5' partial [Arabidopsis
            thaliana]
          Length = 1111

 Score = 1306 bits (3379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/1160 (60%), Positives = 877/1160 (75%), Gaps = 67/1160 (5%)

Query: 660  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 719
            A+D  +AD+S++++VGQSVR+NI+DVN E  RITLSLKQS C+S DASF+QE+FL++EKI
Sbjct: 1    AIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKI 60

Query: 720  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 779
            + LQSS    S+  WVE F IGS+I+G + E ND GVVV+F+  ++V GFI  H + GAT
Sbjct: 61   SDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGAT 120

Query: 780  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 839
            +  GSV+ A +LD+++AERLVDLSL+   ++   +  SN  + KKKRKR  SK+L VHQ 
Sbjct: 121  LVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQR 178

Query: 840  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 899
            V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF  GQSV+A+V A+ +  T
Sbjct: 179  VSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLT 238

Query: 900  AGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 958
            +GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AE                      
Sbjct: 239  SGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAE---------------------- 276

Query: 959  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIG 1017
               VND  ++  +  F+ F++GQ+++AR++AK    D+KK+ LWELS+KP+ML   SE  
Sbjct: 277  ---VND--ASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN 331

Query: 1018 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1077
                 E+ + + GQ V GYVYKVD EW  L +SR++ A++FILD++ +  EL+EF+RRF 
Sbjct: 332  DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP 391

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQTFIHEG 1126
            IGKAV+G+VL+ NKEKK LRLV RP         +G   KT      I  D+   FIHEG
Sbjct: 392  IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG 451

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            DI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ +  V DPL G+ EGQ          
Sbjct: 452  DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQ---------- 501

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSP 1244
             FVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL  + D   K  E+IEDLSP
Sbjct: 502  -FVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSP 559

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
            +M VQGYVKN  SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEP
Sbjct: 560  DMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEP 619

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
            LSKR+EVTLKT ++    +SE  +L  LHVGD++ G+I+RVE +GLFI I+ T +VGLCH
Sbjct: 620  LSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCH 679

Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEE 1423
            +S+LS+D ++N++  Y+AGE V+ KILK+D+EK+RISLGMKSSY  N D D  Q  SE+ 
Sbjct: 680  ISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDN 739

Query: 1424 SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-E 1481
            +    + +    +S +L     AV D   +   GG SLVLAQ+ESRAS+PPLEV+LDD E
Sbjct: 740  TSMECDPIND-PKSEVL----AAVDDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIE 794

Query: 1482 QPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEF 1541
            + D D+  SQNQ     A   DEK+ R  K+K+KEERE++I+AAE RLLE  AP   DEF
Sbjct: 795  ETDFDS--SQNQEKLLGANK-DEKSKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEF 851

Query: 1542 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1601
            E+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLE
Sbjct: 852  EKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLE 911

Query: 1602 NEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK 1661
            NE+GNPPEE+V KVF+RA QYCDPKKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK
Sbjct: 912  NEHGNPPEESVKKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCK 971

Query: 1662 VWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1721
            +WLR++Q  LKQ +E +Q+VV RALL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+
Sbjct: 972  IWLRKIQSSLKQNEEAIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGV 1031

Query: 1722 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1781
            L EYPKRTDLWS+YLDQEIRLG+ D+IR LFERAISLSLPPKKMKFLFKK+LEYEKSVG+
Sbjct: 1032 LREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGD 1091

Query: 1782 EERIEYVKQKAMEYVESTLA 1801
            EER+EYVKQ+AMEY  STLA
Sbjct: 1092 EERVEYVKQRAMEYANSTLA 1111



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 23/189 (12%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           D+ P M V+G V    S G  +     V+A   L ++ +  + +P K+F VG  +  RVL
Sbjct: 556 DLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVL 615

Query: 421 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH------GWITKIEKHGCFVRF- 471
            V+  SKRI VT K      +       +E+ D    H      G I ++E  G F+   
Sbjct: 616 NVEPLSKRIEVTLKTVNAGGR-----PKSESYDLKKLHVGDMISGRIRRVEPFGLFIDID 670

Query: 472 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL----SFMM----- 522
             G+ G    S+L  D      + Y  G+ V+ +I+      +RI+L    S++M     
Sbjct: 671 QTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDD 730

Query: 523 KPTRVSEDD 531
           K   +SED+
Sbjct: 731 KAQPLSEDN 739



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 182 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 241
           I+ L P M V   V++ +  G  +         V + +L +TF     + ++   K V  
Sbjct: 554 IEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTF-VKEPEKEFPVGKLVTG 612

Query: 242 RILFVDPTSRAVGLTLNPYLLHNRAPPSH------VKVGDIYDQSKVVRVDRGLGLLLDI 295
           R+L V+P S+ + +TL       R P S       + VGD+    ++ RV+   GL +DI
Sbjct: 613 RVLNVEPLSKRIEVTLKTVNAGGR-PKSESYDLKKLHVGDMI-SGRIRRVE-PFGLFIDI 669

Query: 296 PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 334
             T +    +  IS ++++ +  ++ +YK G  VR +IL
Sbjct: 670 DQTGMVGLCH--ISQLSDDRMENVQARYKAGESVRAKIL 706


>gi|302781194|ref|XP_002972371.1| hypothetical protein SELMODRAFT_451250 [Selaginella moellendorffii]
 gi|300159838|gb|EFJ26457.1| hypothetical protein SELMODRAFT_451250 [Selaginella moellendorffii]
          Length = 1634

 Score = 1269 bits (3283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 747/1824 (40%), Positives = 1078/1824 (59%), Gaps = 219/1824 (12%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            M+LWG V+ +N+ DL I LP GL G  +  +A         E   D              
Sbjct: 1    MRLWGAVSGINKTDLSISLPNGLHGFVKIDEAFP-------EYTPD-------------- 39

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
                 L DDK                              ++ + VKSIEDHGY+L FGL
Sbjct: 40   -----LSDDK------------------------------LMISSVKSIEDHGYVLSFGL 64

Query: 121  PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 180
            P  +GFL   +   + G  ++ G ++Q  V +ID+ R V+ L++          K+ + +
Sbjct: 65   PEMSGFLLHKD---HQGEKLRVGEIMQSCVSAIDKKRGVINLTT---MQLSSAMKEHENL 118

Query: 181  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
            S+  LVPG +V+  VQ++L NGV+LSFLTYFTG VDIFHLQ+   + +W  DY + K+  
Sbjct: 119  SLGTLVPGALVNGCVQAVLRNGVLLSFLTYFTGIVDIFHLQSVLSSKDWAQDYTEGKRFK 178

Query: 241  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
            ARI+F+D  ++ + L+L  +L+   A    +  GD+ + +++ RVD  +GLLL++P+TP 
Sbjct: 179  ARIIFIDARTKRIRLSLRSHLVD--AEIVSLNRGDVIEAARIKRVDPAIGLLLELPATP- 235

Query: 301  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 360
                YV  +DV++ +V KLEKK+K+G  VR RI+GFR ++ +AT  LK            
Sbjct: 236  HVAGYVNHADVSDVKVDKLEKKFKDGQRVRARIIGFRLMDRMATLTLK------------ 283

Query: 361  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
               PG +V G +  V++ GA+V   GGVK LCP+ HMSE+  +KP  KF+VG ++ FRVL
Sbjct: 284  ---PGALVHGVITRVEACGALVSL-GGVKGLCPVQHMSEYNRLKPSSKFEVGKKMKFRVL 339

Query: 421  GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
                + K++++T KK+LV SKL ++++Y +A D L+THGWI  I   GCF+ FYN V+G 
Sbjct: 340  QYDHEKKKLSLTFKKSLVSSKLPLITAYEDAVDGLVTHGWIQGISNIGCFMEFYNHVKGL 399

Query: 479  APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 538
              RSELG+ P     + +HVGQVVKCR++ S  + RR+ LSF M   R +    VK GS+
Sbjct: 400  VHRSELGIGPDTPIEAAFHVGQVVKCRVLESDLSKRRLRLSFNMS-LRYN----VKPGSV 454

Query: 539  VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN 598
            VS V+  +  + + + V     S  T+  EHL+D             PG           
Sbjct: 455  VSAVITQMGSSQIELQVNDDIAS--TMSYEHLSD------------TPG----------Q 490

Query: 599  ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 658
            E S L+L+AKYSLI++A+ LPS    + P +V+ GY+  I +  C V FL  +TG  P  
Sbjct: 491  EHSKLVLTAKYSLIDAAESLPSSIHQLSPMAVLPGYISVIHDKYCLVSFLDNVTGLVPIG 550

Query: 659  KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 718
             A DG   DLS+ ++VGQSVR+ +L+V+SE  +  LSLKQS C STD S +Q +FL EE 
Sbjct: 551  NASDGYLEDLSQVFFVGQSVRAQVLEVDSENEKFVLSLKQSACFSTDVSLIQGYFLEEEL 610

Query: 719  IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA 778
            IA L+  +     L W     IG ++E  V E  D+G++++ ++++DV GF TH+Q + +
Sbjct: 611  IAKLKEKEG----LDWGNKLQIGELVEADVQEVKDYGIILNLKDNADVVGFATHYQ-SNS 665

Query: 779  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVH 837
             VE G+ ++A ILDV K + +VDLSL                 QK+  K + +K  L +H
Sbjct: 666  PVEVGAAVKACILDVVKTDGIVDLSL-----------------QKRMLKFKKTKAVLQLH 708

Query: 838  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF-PQKQFLNGQSVIATVMALPS 896
            Q V  +VE+VK+ YLVLSLP++ +SIG+AS  DYN +   P   +  GQ   AT+ +  S
Sbjct: 709  QRVEVVVELVKDEYLVLSLPKFENSIGFASTRDYNIRVLRPHDHYSPGQKFSATIYSFGS 768

Query: 897  SSTAGRLLLLLKAISETETSSSKR-----AKKKSSYDV-GSLVQA-----EITEIKPLEL 945
             S   R LLLL     T  +  K       ++   +++ GS +       +I EI  L +
Sbjct: 769  ESVGERTLLLLADTKPTFFTYVKNDIGANHRRPGLFNLSGSFILILTILYQIQEISSLHM 828

Query: 946  RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK-------SNKPDMKK 998
             ++ GI   G +HITEV D       N    +  GQTV A+I++K        N P +  
Sbjct: 829  IIQAGISLRGNVHITEVVDQYEE--GNPLRKYNAGQTVRAKILSKRKTSRKHGNAPTL-- 884

Query: 999  SFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1058
                +LS++PS LT ++    ++  E  V+IGQ V GYV +V   WA L +S HL+ +LF
Sbjct: 885  ----DLSLRPSELTGNDSARSVITFET-VTIGQTVVGYVQEVKESWAWLVLSPHLRGRLF 939

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
            ILDS+ +PSEL+ FQ RF +G A   H+ S+N EKK + L LRP  +             
Sbjct: 940  ILDSSDDPSELERFQERFKVGDAFQCHIRSVNHEKKQVDLSLRPKDEDFK---------- 989

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
                  +GD++GGRI+++  G GGL VQ+G   +GRVH T L +  + DP S + EG+F 
Sbjct: 990  ------KGDLLGGRITRVRPGDGGLTVQVGWETFGRVHVTHLGDTWMDDPASLFTEGKF- 1042

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS--SDLSTDVDTPGKHL 1236
                      V+C+VL++  T++GT  +ELSLR SL G     S  S  + +  +    +
Sbjct: 1043 ----------VRCRVLDLKPTLKGTKSLELSLRPSLGGHGGFESLPSYQTLERKSNACIV 1092

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
              + +L  +M VQG+VK++T KGCF++LS  +DA++LL NLS  +V++P + FP GKLV+
Sbjct: 1093 NSVSELQQDMQVQGFVKDLTEKGCFVILSPSVDARILLKNLSSSFVQNPAEMFPAGKLVS 1152

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
            GR+LSV PLS  VE++L TS        E ++      GDIV G+I+ +E++G+F+ + +
Sbjct: 1153 GRILSVRPLSGHVEMSLTTS-------QESSSWKTFCAGDIVSGRIRSIEAFGMFVALAD 1205

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
            ++ VGLCHVSE+S+D + ++ T+Y+ G++V+VKILKVD E +RISLGMK+SY   D D L
Sbjct: 1206 SDGVGLCHVSEVSDDFIQDLPTLYKVGQRVQVKILKVDAETKRISLGMKASYLTPD-DGL 1264

Query: 1417 QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV 1476
            +   EE      EE  + N           + + D + ED   L          V PLEV
Sbjct: 1265 ETMDEEP---VAEEPSTAN----------VLMETDEKEEDYLDLDTEATPMATDVDPLEV 1311

Query: 1477 NLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-AP 1535
            NL++   D+++ +         A+   +K  +  KK+ KE+RE  +RAAEE+ L+KD  P
Sbjct: 1312 NLEE---DVEDKVPVEDEKPLTAEES-KKKTKKEKKRLKEQREAAVRAAEEKFLQKDQPP 1367

Query: 1536 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1595
             T D+FERLV +SPNSS+VWIKYMA+ L +AD +KAR++A+RAL+TIN REE EK+NIW 
Sbjct: 1368 ETEDDFERLVAASPNSSYVWIKYMAYWLRLADPDKARAVADRALETINYREEMEKMNIWT 1427

Query: 1596 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1655
            AY NLEN Y   P EAV  +F+RA++YCDPKK+HL+LLG+YE T Q+++ D L+  M +K
Sbjct: 1428 AYINLENSYAPSPREAVSALFERAMKYCDPKKLHLSLLGVYESTNQHEMTDALMKSMTRK 1487

Query: 1656 FKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1714
            FK S KVWLR V  LL +   +  +   ++A ++LPRHKHIKFIS+ AILEFK+G  +R 
Sbjct: 1488 FKTSTKVWLRHVSNLLGRGLSDKARKAFEQACVALPRHKHIKFISRAAILEFKSGSPERA 1547

Query: 1715 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1774
            R +F+G+L  YPK+TDLWS+YLDQEIRLGD  ++R LFERA  L LP KKMKFLFKKYL+
Sbjct: 1548 REIFDGVLRNYPKKTDLWSVYLDQEIRLGDTAIVRNLFERATCLDLPAKKMKFLFKKYLD 1607

Query: 1775 YEKSVGEEERIEYVKQKAMEYVES 1798
            +EK  G+E RIE+VK KAME+VE+
Sbjct: 1608 FEKGQGDETRIEHVKTKAMEFVEA 1631


>gi|414883924|tpg|DAA59938.1| TPA: hypothetical protein ZEAMMB73_957052, partial [Zea mays]
          Length = 1207

 Score = 1181 bits (3055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1018 (58%), Positives = 779/1018 (76%), Gaps = 29/1018 (2%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            MKLWGVV EVN+KD+V+ LPGG+RG  R+ D  D  L    + + +NL   + HVGQLV 
Sbjct: 198  MKLWGVVIEVNQKDIVLSLPGGIRGFVRSEDVCDIALQENRKDSGNNLCAEVVHVGQLVP 257

Query: 61   CIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF 118
            CIVL++DDD +E GK  +++WLSLRLSLLYKGL+L+ +QEGMVLTA VKSIEDHGYILHF
Sbjct: 258  CIVLRVDDDSRE-GKVNKRVWLSLRLSLLYKGLALDGLQEGMVLTAQVKSIEDHGYILHF 316

Query: 119  GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK 178
            G+ SF+GF+ +++  +   +  +   L+Q VV++ID+TR +V+LSSD D +SK   KDLK
Sbjct: 317  GVSSFSGFMQKDDKED---VKTERRQLMQCVVKAIDKTRAIVHLSSDEDLLSKSTIKDLK 373

Query: 179  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 238
            G+SID L+PGMMV+ RV S LENG+MLSFLTYF+GTVDIF+L N+FP+ NWK+DY+++KK
Sbjct: 374  GLSIDHLIPGMMVNARVHSFLENGLMLSFLTYFSGTVDIFNLLNSFPSGNWKDDYSKNKK 433

Query: 239  VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 298
            VNARILFVDP++RAVGLTLN +LLH   PP ++K GDIYD+SKV+RVD+  GL L+IPS 
Sbjct: 434  VNARILFVDPSTRAVGLTLNKHLLHLEVPPINLKAGDIYDKSKVLRVDKKAGLFLEIPS- 492

Query: 299  PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 358
            P  +P +++I DV++++ + LEK +KEGS +RVRILG R+LEG+A G +K SAFEG VFT
Sbjct: 493  PTPSPGFISIRDVSDKDAKNLEK-FKEGSSLRVRILGVRNLEGVAIGTIKDSAFEGSVFT 551

Query: 359  HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-IVKPGKKFKVGAELVF 417
            H DVKPGM+V+ KV  V+ FGAIVQF  GVKALCPLPHMSE E +VKP KKFKVGAEL+F
Sbjct: 552  HDDVKPGMLVRAKVATVEPFGAIVQFSSGVKALCPLPHMSELEHVVKPPKKFKVGAELLF 611

Query: 418  RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
            RVLG KSKR+TVT+KK+LVKSKL +LSSYA+A   L+THGWIT IEKHGCFV+FYNGVQG
Sbjct: 612  RVLGCKSKRVTVTYKKSLVKSKLDVLSSYADAKIGLVTHGWITHIEKHGCFVKFYNGVQG 671

Query: 478  FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGS 537
            F  RS+LGL+ G E  ++YHVGQVVKCRI++ IPASR++N+SF++   R++  D  KLGS
Sbjct: 672  FVSRSDLGLEAGTEAENVYHVGQVVKCRIINVIPASRKLNVSFVISHNRIAPIDTPKLGS 731

Query: 538  LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 597
            +VSGVV+ +TP AVVV V   G+SKGTI  EHLADH   A  +K+V+KPG+EF+QLLVLD
Sbjct: 732  IVSGVVERLTPAAVVVSV--NGFSKGTILNEHLADHHGQAAQLKNVLKPGHEFNQLLVLD 789

Query: 598  NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
             E  NL+LSAK+SLIN A  +PS+ S +HP  VVHGY+CNIIE GCFVRFLG LTGF+P+
Sbjct: 790  TEGQNLVLSAKHSLINCANDIPSEISQMHPGVVVHGYICNIIEAGCFVRFLGHLTGFSPK 849

Query: 658  SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 717
             KAVD     LS  +YVGQSVRS+IL VN+ET R+ L+L+QS CSS D+SF+Q +FLL++
Sbjct: 850  DKAVDRWIEKLSDAFYVGQSVRSHILSVNAETARVKLALQQSMCSSMDSSFIQGYFLLDQ 909

Query: 718  KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 777
            KIA L+ S ++     W   F IGS++E +V    ++G++++F++H D  G I HHQL G
Sbjct: 910  KIAALKYSSND-----WARHFGIGSLVEAEVGAIEEYGIILNFKDHLDTVGLIEHHQLGG 964

Query: 778  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
            ++VE GS ++  +LD++    +V+LS+K   ID  R        +KKKR+R    DL +H
Sbjct: 965  SSVEVGSSVKGLVLDLSDG--VVNLSVKPELIDSVRIV-----GKKKKRQRAVVADLELH 1017

Query: 838  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSS 897
            + VNA+VEI+K++Y+VLS+PEYN++IG++ + DYN+Q  P   + NGQ +   V  +PSS
Sbjct: 1018 EEVNAVVEIIKDSYMVLSIPEYNYAIGFSPLMDYNSQLLPHHHYDNGQRITVVVGNIPSS 1077

Query: 898  STAGRLLLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGR 956
             ++GRL+LL KA ++ +  S SKRAKKKS Y +GSLV+AEI +IKPLEL LKFG   HGR
Sbjct: 1078 DSSGRLILLPKASAQYSSLSDSKRAKKKSGYKIGSLVEAEIIDIKPLELLLKFGGNLHGR 1137

Query: 957  IHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK--KSFLWELSIKPSMLT 1012
            IHITE+ ++ S   E+ FS  +IGQ +TARI++++ +P  K  K F WELSI+P ++ 
Sbjct: 1138 IHITEILEEDS--AEHPFSELRIGQKLTARIVSEA-EPSGKSGKKFKWELSIRPCIVN 1192



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 159/667 (23%), Positives = 273/667 (40%), Gaps = 113/667 (16%)

Query: 531  DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 590
            D VK G LV   V  V P   +V   + G  K   P  H+++ LEH      V+KP  +F
Sbjct: 553  DDVKPGMLVRAKVATVEPFGAIVQ-FSSGV-KALCPLPHMSE-LEH------VVKPPKKF 603

Query: 591  D---QLL--VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
                +LL  VL  +S  + ++ K SL+ S   + S  +      V HG++ +I + GCFV
Sbjct: 604  KVGAELLFRVLGCKSKRVTVTYKKSLVKSKLDVLSSYADAKIGLVTHGWITHIEKHGCFV 663

Query: 646  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            +F   + GF  RS        +    Y+VGQ V+  I++V   + ++            +
Sbjct: 664  KFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINVIPASRKL------------N 711

Query: 706  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
             SF+  H     +IA + + K             +GS++ G V       VVVS    S 
Sbjct: 712  VSFVISH----NRIAPIDTPK-------------LGSIVSGVVERLTPAAVVVSVNGFSK 754

Query: 766  VYGFITHHQLA---GATVESGSVI-------QAAILDVAKAERLVDLSLKTVFIDRFREA 815
              G I +  LA   G   +  +V+       Q  +LD  + + LV LS K   I+   + 
Sbjct: 755  --GTILNEHLADHHGQAAQLKNVLKPGHEFNQLLVLD-TEGQNLV-LSAKHSLINCANDI 810

Query: 816  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 875
             S           +    + VH     I  I++    V  L    H  G+ S  D    +
Sbjct: 811  PSEIS--------QMHPGVVVH---GYICNIIEAGCFVRFL---GHLTGF-SPKDKAVDR 855

Query: 876  FPQK---QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS---------SSKRAKK 923
            + +K    F  GQSV + ++++ + +   +L L     S  ++S             A K
Sbjct: 856  WIEKLSDAFYVGQSVRSHILSVNAETARVKLALQQSMCSSMDSSFIQGYFLLDQKIAALK 915

Query: 924  KSSYD------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 977
             SS D      +GSLV+AE+  I+      ++GI  + + H+  V   + + +    S+ 
Sbjct: 916  YSSNDWARHFGIGSLVEAEVGAIE------EYGIILNFKDHLDTVGLIEHHQLGG--SSV 967

Query: 978  KIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML-TVSEIGSKLLFEEC---DVSIGQRV 1033
            ++G +V   ++  S+        +  LS+KP ++ +V  +G K   +     D+ + + V
Sbjct: 968  EVGSSVKGLVLDLSDG-------VVNLSVKPELIDSVRIVGKKKKRQRAVVADLELHEEV 1020

Query: 1034 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1093
               V  + + + +L+I  +  A  F     Y    L      +  G+ +T  V +I    
Sbjct: 1021 NAVVEIIKDSYMVLSIPEYNYAIGFSPLMDYNSQLLP--HHHYDNGQRITVVVGNIPSSD 1078

Query: 1094 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1153
               RL+L P          D      ++    G +V   I  I      L+++ G +L+G
Sbjct: 1079 SSGRLILLPKASAQYSSLSDSKRAKKKSGYKIGSLVEAEIIDIKPL--ELLLKFGGNLHG 1136

Query: 1154 RVHFTEL 1160
            R+H TE+
Sbjct: 1137 RIHITEI 1143



 Score = 47.4 bits (111), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 19/156 (12%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            +I  + P ++V GY+ N+   GCF+     L          D ++E     F +G+ V  
Sbjct: 813  EISQMHPGVVVHGYICNIIEAGCFVRFLGHLTGFSPKDKAVDRWIEKLSDAFYVGQSVRS 872

Query: 1298 RVLSVEPLSKRVEVTLKTS----------------DSRTASQSEINNLSNLH--VGDIVI 1339
             +LSV   + RV++ L+ S                D + A+    +N    H  +G +V 
Sbjct: 873  HILSVNAETARVKLALQQSMCSSMDSSFIQGYFLLDQKIAALKYSSNDWARHFGIGSLVE 932

Query: 1340 GQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVD 1374
             ++  +E YG+ +   ++ + VGL    +L    V+
Sbjct: 933  AEVGAIEEYGIILNFKDHLDTVGLIEHHQLGGSSVE 968



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 78/174 (44%), Gaps = 10/174 (5%)

Query: 1236 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1295
            L    D    ++  G++ ++   GCF+     +   V  S+L        E  + +G++V
Sbjct: 637  LSSYADAKIGLVTHGWITHIEKHGCFVKFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVV 696

Query: 1296 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
              R+++V P S+++ V+   S +R A       +    +G IV G ++R+    + +++ 
Sbjct: 697  KCRIINVIPASRKLNVSFVISHNRIAP------IDTPKLGSIVSGVVERLTPAAVVVSV- 749

Query: 1356 NTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            N    G      L++ H     ++ + + G +   ++L +D E + + L  K S
Sbjct: 750  NGFSKGTILNEHLADHHGQAAQLKNVLKPGHEFN-QLLVLDTEGQNLVLSAKHS 802



 Score = 40.4 bits (93), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 24/211 (11%)

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            Q ++C V  I +T R   H    L S  D +S +   DL        K L  I+ L P M
Sbjct: 339  QLMQCVVKAIDKT-RAIVH----LSSDEDLLSKSTIKDL--------KGLS-IDHLIPGM 384

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-FPIGKLVAGRVLSVEPL 1305
            +V   V +    G  +         V + NL + +     K+ +   K V  R+L V+P 
Sbjct: 385  MVNARVHSFLENGLMLSFLTYFSGTVDIFNLLNSFPSGNWKDDYSKNKKVNARILFVDPS 444

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV-IGQIKRVE-SYGLFITIEN-TNLVGL 1362
            ++ V +TL    ++     E+  + NL  GDI    ++ RV+   GLF+ I + T   G 
Sbjct: 445  TRAVGLTL----NKHLLHLEVPPI-NLKAGDIYDKSKVLRVDKKAGLFLEIPSPTPSPGF 499

Query: 1363 CHVSELSEDHVDNIETIYRAGEKVKVKILKV 1393
              + ++S+    N+E  ++ G  ++V+IL V
Sbjct: 500  ISIRDVSDKDAKNLEK-FKEGSSLRVRILGV 529


>gi|145350993|ref|XP_001419873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580106|gb|ABO98166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1869

 Score =  988 bits (2554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1841 (34%), Positives = 1037/1841 (56%), Gaps = 144/1841 (7%)

Query: 2    KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSC 61
            KL G+++EV  + LV+ LP GLRG    A+      +++ + + +  L  ++  GQ++ C
Sbjct: 118  KLLGIISEVTARGLVMSLPDGLRGTVARAEVAGTSDEDDDDDDAEASLELLYEPGQVLRC 177

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 121
             V+ L+  K + G ++I LSLRL  + +GL+ E++ EG V  A V+S+EDHGYIL FG+ 
Sbjct: 178  AVVSLE--KGKTGGKRIELSLRLEKVCEGLTKESLTEGSVAPAVVQSVEDHGYILSFGIA 235

Query: 122  SFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVY-LSSDPDTVSKCVTKDLKGI 180
              +GFLP+ N+A + G +++ G ++  V+    +  K  + ++SD   +   V  +    
Sbjct: 236  DTSGFLPKKNVASDLG-EIRKGRIIDVVITGAPKGNKGYFTVTSDQKRIKTSVAHETSAT 294

Query: 181  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
            ++D L+PGM+V++R++ IL +GV +SF+TYF+GTVD FH      +    + +   +++ 
Sbjct: 295  NVDTLLPGMLVNSRIKQILSDGVSVSFMTYFSGTVDCFHTGALATSKGVSSAFKVGQRMR 354

Query: 241  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
            ARI+FVD  S+ V LTL P+LL + A     K+G  +  +K+ RVD G G+ L I     
Sbjct: 355  ARIIFVDSASKRVSLTLLPHLL-DYASIELPKLGKTFQTAKIERVDAGQGVALSISDGKN 413

Query: 301  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 360
                Y  +S +++E V K+EKK+K G  V VR++G R L+G+ +  LK+S      F+  
Sbjct: 414  DIAGYAHVSQLSDERVEKVEKKFKIGRSVSVRVIGHRLLDGVVSVSLKSSVMAQPFFSLD 473

Query: 361  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
            ++ PGM+V G+V+AV+ +GAIV+   G+KALCP  H+S+        K   GA+L FRVL
Sbjct: 474  ELTPGMLVNGEVLAVEHYGAIVKLAEGIKALCPPLHISDIVGRTTSAKVAPGAKLKFRVL 533

Query: 421  GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
             V   S+R TV+HK+TL+KS+L ++    +A    ITHG +T + ++G FV  Y  ++G 
Sbjct: 534  NVDRNSRRATVSHKRTLIKSELPVIGQIEDAVPGSITHGVVTGVNEYGVFVSLYGDLKGL 593

Query: 479  APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM----------------- 521
            A  ++LGL    +PS  + VGQVV+ +++S+   S R+ LS                   
Sbjct: 594  AGLNDLGLLRDQKPSDAFGVGQVVRVQVVSA-DTSGRLRLSLASGDADGNSASMIINASA 652

Query: 522  --MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 579
              +KP  V E  +V    + SG     T N  VV+ + +G   G +P  HL+DH   A  
Sbjct: 653  DALKPGHVVEKAVVT--HVASG-----TGNVEVVFSMEEGNIPGVVPLAHLSDHPLTAQG 705

Query: 580  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCN 637
            + +V+ PG E   L+VL+ +S+  ++S K SL+ S+++  LP+ A      +V  GYV +
Sbjct: 706  LSAVLNPGDEIGPLVVLEGKSTRAVMSRKLSLVESSREGKLPATAKEATLGAVFPGYVAS 765

Query: 638  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL--DVNSETGRITLS 695
                G FVRFLGRLTG AP S+  DG   D+ + + VG++V + IL  D ++ T R++LS
Sbjct: 766  ATAAGVFVRFLGRLTGLAPPSQLTDGTTGDVHEMFPVGKTVNALILSVDTSTPTPRLSLS 825

Query: 696  LKQSCCSS--TDA----SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 749
            LK S  SS  +DA    SF Q+   L+++      ++  G   +  +    G+ ++  V+
Sbjct: 826  LKVSATSSPLSDAPLVRSFFQDIEFLDDRDV---GAEDVGISPETAKSLKPGTWMDVSVN 882

Query: 750  ESNDFGVVVSFEEHSDVYGFITHHQL-AGATVESGSVIQAAILDVAKAERLVDLSLKTVF 808
            E+ D+GV++     S+V G +T HQ+    T  +G  ++  +LDV++ E +VD+ ++   
Sbjct: 883  ETKDYGVLMDVPIDSNVVGLVTPHQIPVDTTFTAGDEVKGYVLDVSRREGVVDIGMR--- 939

Query: 809  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV 868
             D   +   N+ +  K  K+     L V   V+A VE++K  Y+ LSLPE+N  IG+A V
Sbjct: 940  -DGLGKFKRNKTSSGKSLKK-----LKVGDQVSAEVELIKAEYVALSLPEHNGLIGFAPV 993

Query: 869  SDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY 927
               N + +   ++F   Q V A +  LP     GRLLL +  +++  T+S + A      
Sbjct: 994  HHLNLRYEDASERFTPTQCVKAVIAQLPEGEM-GRLLLTVP-VTKGTTASGRIA------ 1045

Query: 928  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
              G+LV+  ++E++ L+  +       GR++I+E +  +   +E++     +G TV A +
Sbjct: 1046 -AGTLVKGVVSEVQNLQALVALPNNARGRLYISEFSPGEDTPLESI----SVGSTVEATV 1100

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1047
            +  +      +  L +LS+            K  F   DVS+G  V+ YV  V ++   +
Sbjct: 1101 MGLAGD----RGGLLDLSMH----------RKSAFVLEDVSVGDDVSAYVVSVTDDGIKV 1146

Query: 1048 TISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106
            TI+  + + +  ++++ + SEL  +   RF +G+ V+  ++ +   KK + L LR   DG
Sbjct: 1147 TIAPGITSFIPKIETSDKSSELAMKLSSRFTVGERVSAIIVGVKATKKRVDLSLR--TDG 1204

Query: 1107 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1166
             S            + +  G  V G I++++  VG L+VQ+G H  GRVH T++      
Sbjct: 1205 ASG----------SSRVCVGAKVQGIITRVVENVG-LMVQLGSHSVGRVHLTDMA----- 1248

Query: 1167 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226
                  DE   DP + Y+ GQ V+ +VL  S        ++LS+R+S      T+ +D  
Sbjct: 1249 ------DEYDDDPCAKYEAGQVVQVRVLNAS----SNGELDLSMRASRLSSKRTSPTD-- 1296

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
                     +  I +L P   V+GYVK  + KGCFI LSR +DA   LSNL+D ++  P 
Sbjct: 1297 -------PEITDISNLVPGQRVKGYVKATSKKGCFIALSRGIDAMCKLSNLADSFIADPA 1349

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1346
            K FP GKLV GR++S +    RVE+  + +D+   +     ++S + VGD++IG ++RV+
Sbjct: 1350 KTFPPGKLVEGRIVSADAAKGRVELAFRETDATQGNA----DVSTVKVGDVLIGTVRRVQ 1405

Query: 1347 SYGLFITIENTNLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             YG+F++++ T L GLCH+S  ++  + D++ +  R GE+V+ K+L+++ E  +ISLG+K
Sbjct: 1406 PYGVFVSLDGTKLSGLCHISMFADARISDDLASHVRQGERVRTKVLEINTETNKISLGIK 1465

Query: 1406 SSYFKNDADNL-----QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSL 1460
            +S F++D  +       +++    D  ++   S    S ++      +D  + +++G S 
Sbjct: 1466 ASLFEDDDGDGDEEMADVNTAHTFDPLMDSSESGESDSDID------EDGPLHADEGEST 1519

Query: 1461 VLAQIESRASVPPL--EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEER 1518
                  S +   P+  ++  D +    D  ++         K  D+  ++  KK+ KE R
Sbjct: 1520 DEESDPSDSEDAPIGNDLGFDWDAEKTDASMTDVADEKAGKKGADKAPSKREKKRLKEAR 1579

Query: 1519 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1577
            E EI   E+ + + D  P +  EFE+L+ +SP SSF+W++YMAF +S    ++A+ +AER
Sbjct: 1580 ELEILQKEQEMRDGDHIPESAMEFEKLLIASPRSSFLWVRYMAFHVSCGAYDEAKEVAER 1639

Query: 1578 ALQTINIREENEKLNIWVAYFNLENEYGNP-PEEAVVKVFQRALQYCDPKKVHLALLGLY 1636
            AL  I   EE E++N+W AY NLEN+YG P PEEAV K+F RA+Q  D K +HL L+ +Y
Sbjct: 1640 ALGAIPASEEAERMNVWAAYLNLENKYGTPSPEEAVKKLFTRAVQIADAKHMHLTLVSMY 1699

Query: 1637 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR-LLKQQQEGVQAVVQRALLSLPRHKHI 1695
            ER  Q    +E L K  KKF +S K+WL  ++  +LK   E  + ++ RA  SLP+HKHI
Sbjct: 1700 ERNAQEDALEESLKKAAKKFSYSAKIWLAYIRSAVLKNDSEKARKLLDRATQSLPKHKHI 1759

Query: 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1755
            K +++TA+LE K G  +RGR+MFEGIL  YP+RTD+WS+Y+DQEI+ GD+  IR LFERA
Sbjct: 1760 KILTRTALLEMKEGNPERGRTMFEGILRNYPRRTDIWSVYIDQEIKQGDIQRIRALFERA 1819

Query: 1756 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
              L L  K MKFLFK+YL++E+S G++ERI +VKQ+AMEYV
Sbjct: 1820 THLDLNAKSMKFLFKRYLDFERSEGDDERIAHVKQRAMEYV 1860


>gi|384249900|gb|EIE23380.1| hypothetical protein COCSUDRAFT_28807 [Coccomyxa subellipsoidea
            C-169]
          Length = 1757

 Score =  983 bits (2541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/1850 (34%), Positives = 1011/1850 (54%), Gaps = 155/1850 (8%)

Query: 2    KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSC 61
            K+WG VAE+  ++L+I LP GL+G   AA+ + P+      A +   L ++F  GQLV C
Sbjct: 11   KIWGTVAEITHRELIISLPHGLKGHVPAAEVMHPL------AADVPSLSSLFRAGQLVQC 64

Query: 62   IVLQLDDDKKEI-----GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 116
             ++ L D    +     G+++I LSL ++ +  G+    +  GM L A V+S+EDHG++L
Sbjct: 65   SIVDLQDGDSGVAGGKAGRKRIVLSLHVAKVNAGIGPAALIAGMQLPACVRSVEDHGFLL 124

Query: 117  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT------RKVVYLSSDPDTVS 170
              G+   T FL R N  +    + +P  LL G V  +  T      R +V++S+DP +++
Sbjct: 125  TTGVKGVTAFLERTNWLKACSGEARP--LLPGAVLPVTVTAAARPGRPLVHVSADPKSLA 182

Query: 171  KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 230
            K   K+ +G++I  L+PGM+V+ RV+++L +G+++SFLTYF GTVD FHL    P  +W+
Sbjct: 183  KGAVKEWEGLTIGSLLPGMLVNARVRNVLSDGLLVSFLTYFNGTVDCFHLSQQPPPADWQ 242

Query: 231  NDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLG 290
              Y    +V ARI++VDP S+ V L+L P+L+   A P+   +  +++ S V RVD  LG
Sbjct: 243  KGYEAGARVRARIIYVDPVSKRVSLSLLPHLVAGSASPALPPINTLFEHSIVRRVDNALG 302

Query: 291  LLL------DIPSTPVSTPA-YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 343
            LLL      D P+   + PA Y  IS V+E  + KL+K YK G  V  R++G R ++GLA
Sbjct: 303  LLLELRSEDDAPAEQPNAPAGYAHISAVSESRIEKLDKVYKVGKKVAARVIGARPMDGLA 362

Query: 344  TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 403
               L+ +A      +++DV PG +V G V  V+ FG  V+   G+KAL P  HMS+    
Sbjct: 363  VCTLREAAVRAGTISYADVAPGSIVSGTVENVEDFGLFVKLAPGIKALVPTVHMSDSGSE 422

Query: 404  KPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWIT 460
            K   KFK G ++  RVL   V +++IT++ KK LV  KL   +S+ EA       HG++T
Sbjct: 423  KARAKFKEGQKVSGRVLEVDVAARKITLSLKKLLVGEKLPPFASWQEAAQPGARAHGFVT 482

Query: 461  KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             ++++G FV F NGV+G AP  +LGL+P  +P+  + +G+ VK R++S     RR+ LSF
Sbjct: 483  GVQEYGVFVSFCNGVRGLAPTQQLGLEPNQDPAKQFPIGKTVKARVVSVDEERRRLRLSF 542

Query: 521  MMKP--TRVSEDDLVKLGSLVSGVVDVV---TPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
              K      +      +G L  G +       P A  V  +      G +   HLADH  
Sbjct: 543  APKTAADAAAAAGADPMGGLQPGTILRAGEGVPGASPVLAL------GRLDAAHLADHPA 596

Query: 576  HATVMKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 633
                +   +  G E   LL+L+   ++  L ++ K SL+ +A QLP+    +   ++  G
Sbjct: 597  AEAALSEALVDGSELGPLLILERLEKAGMLRVTRKASLLAAAAQLPAAIEDVKEGTLASG 656

Query: 634  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            YV N+     FVRFLG LTG A  ++  D   +D S+ +  GQSVR+ ++ V+    R T
Sbjct: 657  YVANVTADAVFVRFLGSLTGRAGLAQLADQFVSDPSRHFTEGQSVRAAVVTVDLAKQRFT 716

Query: 694  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 753
            ++LK S   + DA++ +  F   E    +++++ +  ++ W E   IG    G VH+  +
Sbjct: 717  VALKHSLTGAPDAAYARFLFADLETAERIRAAEPSTEQVNWAE-LAIGGRAAGAVHDVKE 775

Query: 754  FGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
            +GVV   + H+DV       Q+ G    +G+ I+  ILDV K + +VDL+LK   +    
Sbjct: 776  YGVVCDLDAHADVVALAAPEQVEGEAT-TGTRIKGRILDVNKKDGIVDLTLKASLV--AG 832

Query: 814  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN- 872
                      K    EA   +G    V A+VE+VK++YLVLSLP    +I +A+ SD+N 
Sbjct: 833  APKKATGKAAKAALPEAVCQVGAK--VEAVVELVKDDYLVLSLPAQQQTIAFAATSDFNL 890

Query: 873  -TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS-SKRAKKKSSYDVG 930
             ++    +QF+ GQ + A V+   S    GR ++ +  +S++  +   KR +K +    G
Sbjct: 891  GSRAHNSRQFIPGQKISAVVVEQASPENGGRTIVHVPLVSDSPAAPREKRERKPAKIPPG 950

Query: 931  SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 990
            ++V A++T +      ++   G H                            + + ++A 
Sbjct: 951  TIVAAKVTNMHATHAGVELESGAH----------------------------ILSILLAY 982

Query: 991  SN--KPDMKKSFLWELSIKPSMLTVSEIGSKL-LFEECDVSIGQRVTGYVYKVDNEWALL 1047
            +N  + + +   L ELS++PS++   +   K  +    D+  GQ V GYV +   + A L
Sbjct: 983  ANLHRFEGRNHGLLELSLRPSLVAAEKGAPKPGMLSVDDLQEGQTVRGYVQETAPDCAWL 1042

Query: 1048 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR------ 1101
             +S  L+ +L  LDSA + ++L  F  RF +G+++   V+ ++K++  + L LR      
Sbjct: 1043 VLSPALRGRLHALDSADDVTQLAAFGGRFTVGQSLRCRVVQVDKKRGQVDLSLREPGAAS 1102

Query: 1102 PFQDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1159
              Q  ++ +T     +  N +  + E  I   +     SG  G+ V +  H  G V  T+
Sbjct: 1103 AKQWHVTQRTPTPICAFANARCTMVEWQISSDKAIVACSGA-GVRVHLAGHASGHVAMTD 1161

Query: 1160 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS-------RTVRGTFHVELSLRS 1212
            + +        G+ E   + L     G FV+C+VL  +       RT  GT      LR 
Sbjct: 1162 VHD--------GFVENAIESLKA---GDFVRCRVLGRAEDKGAEKRTKEGTEIKRAGLRE 1210

Query: 1213 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1272
                      +  ++  ++  +  +++  LS    V+GYVK V+S G F+ L+R ++A+V
Sbjct: 1211 PFASNRCEQENFPASMSNSGTQGFDEL--LSFGQQVRGYVKGVSSAGAFVALARDMEARV 1268

Query: 1273 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1332
             L+NL+DGYVE P+  FP GKLV GR+L+ E    R+E++LK+    T        L + 
Sbjct: 1269 KLNNLADGYVEDPKTAFPQGKLVRGRILATE--HNRIELSLKSKGWAT--------LEDF 1318

Query: 1333 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1392
              G +V G+++R E +G+FI I+++ + G+ H+SE++++ VD++ ++++ G+ V+ K+L 
Sbjct: 1319 TEGQVVRGRVRRAEKFGVFIRIDDSAVTGMAHISEVADERVDDLPSMFKPGQGVRAKVLS 1378

Query: 1393 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM 1452
            VD E +R+SLG+K SYF +D ++ +   + + +E                          
Sbjct: 1379 VDAETQRLSLGLKPSYFGDDDEDGEEPDQAQEEEGT------------------------ 1414

Query: 1453 ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKK 1512
             +ED    + A++        LE  +DD   + D+  +  Q    +    D    +  ++
Sbjct: 1415 PAEDDNDDIDAEV--------LEA-MDDSSEEEDDWRAGAQILNGDDVAADRALTKRQRR 1465

Query: 1513 KEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1572
            ++K E E+ +RAAE R L++  P +  +FERLV  SP+SS+VWI+YMAF + + +++KAR
Sbjct: 1466 RQKAEEEERVRAAELRQLQQPPPESEVDFERLVLESPSSSYVWIRYMAFHMGVGEIDKAR 1525

Query: 1573 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1632
             +A+RAL+TIN REE EKLN+WVA+ NLEN +G+PP+EA++K+FQ+AL + D KK++LAL
Sbjct: 1526 GVADRALKTINFREEREKLNVWVAWLNLENLHGSPPDEALMKLFQKALPHTDQKKLYLAL 1585

Query: 1633 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ-RLLKQQQEGVQAVVQRALLSLPR 1691
            L + ER+ +++L  + L  M +K+  S KVWLR     L +      +  + RA+ +LP 
Sbjct: 1586 LTILERSARDELTQQTLRTMTRKYWASAKVWLRAYGYDLGRNDGNAARRALDRAIGALPA 1645

Query: 1692 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1751
             KHIK +SQ A++EFK G  +RGR +FEGIL  YPKR DLWSIYLDQEIR GD    R L
Sbjct: 1646 RKHIKVLSQAALMEFKEGDPERGRGVFEGILRNYPKRLDLWSIYLDQEIRAGDRQRARSL 1705

Query: 1752 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            FERA  LSLPPKKMKFLFK++L++EK+ G+   +E+VKQ A EYVE+ LA
Sbjct: 1706 FERATHLSLPPKKMKFLFKRFLDFEKTHGDAAGVEHVKQAAKEYVEANLA 1755


>gi|115471081|ref|NP_001059139.1| Os07g0203300 [Oryza sativa Japonica Group]
 gi|113610675|dbj|BAF21053.1| Os07g0203300, partial [Oryza sativa Japonica Group]
          Length = 689

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/718 (56%), Positives = 527/718 (73%), Gaps = 35/718 (4%)

Query: 1089 INKEKKLLRLVL---RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            +N+EK+LLRL     +   + I +    +S     T   +GDI+GGRI KIL GVGGLV+
Sbjct: 2    VNREKRLLRLKALDSQSLPENIGETQKPLSATVEHT--KQGDIIGGRIQKILPGVGGLVI 59

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
            QIGPHL+GRVH+TE+ +  V +P+SG+ EGQ           FVKCKVL++SR+  G+  
Sbjct: 60   QIGPHLHGRVHYTEIVDSWVQEPISGFHEGQ-----------FVKCKVLDVSRSSEGSVR 108

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V+LSLRSS+   +S  S  L  D        EKI DL P   V+GYVK+V SKGCFIM+S
Sbjct: 109  VDLSLRSSM-CANSNQSRRLFDDSRIRTSRFEKINDLCPGTEVKGYVKSVNSKGCFIMVS 167

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
            R ++A+++LSNLSD YVE+P+ +FP+G LV GRVLS EP S +VEV+L+ +    + +S+
Sbjct: 168  RTIEARIILSNLSDEYVENPQNDFPVGLLVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSD 227

Query: 1326 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1385
              + S+LHVGDI+ GQ+KRVES+GLF+TI+ + LV LCHVSELS++ V +I + ++AG+K
Sbjct: 228  DISYSDLHVGDIIAGQVKRVESFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDK 287

Query: 1386 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV 1445
            VK KILK+D+E+ R+S+GMK SY   D+     +S++E DE + E  S N          
Sbjct: 288  VKAKILKIDEERHRVSIGMKKSYIGPDSTG--DTSDDEDDEIVPEEISRNPV-------- 337

Query: 1446 AVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEK 1505
                  M  +   +LVL + ESRASV PL+V+LD+ +       ++ Q   +  +  D+K
Sbjct: 338  ------MGRDRNHALVLPKPESRASVLPLQVSLDESEGSDQENDNKGQEIANGTEVDDKK 391

Query: 1506 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1565
            +N+  K+K +++RE EI A EER L++D P+TPDEFE+LVRSSPNSSFVWI YMAF+L +
Sbjct: 392  SNKRLKEKARKQRELEISALEERALQRDIPQTPDEFEKLVRSSPNSSFVWINYMAFLLDL 451

Query: 1566 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1625
            ADV+KAR++AERAL+TINIREE EKLN+WVAYFNLENEYG+P E+AV K+FQRALQYCDP
Sbjct: 452  ADVDKARAVAERALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDP 511

Query: 1626 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQ 1683
            KKVHLALL +YERTEQ  LADELL +M K+FK SCK+WLR +Q  LKQ +  E ++ +V+
Sbjct: 512  KKVHLALLAMYERTEQYTLADELLDRMTKRFKTSCKIWLRCIQLSLKQSKDVECIKLIVK 571

Query: 1684 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1743
            RALLSLP+ K  KF+SQTAILEFK GV + GRS FE IL EYPKRTDLWS+YLDQEIRLG
Sbjct: 572  RALLSLPQSKRRKFLSQTAILEFKCGVPEEGRSRFELILREYPKRTDLWSVYLDQEIRLG 631

Query: 1744 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            D ++IR LFER   LSLPPKKMKFLFKKYLEYEKS G+EERIE+VKQKA+EYV+S+LA
Sbjct: 632  DTEIIRALFERVTCLSLPPKKMKFLFKKYLEYEKSQGDEERIEHVKQKALEYVQSSLA 689



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 139/314 (44%), Gaps = 42/314 (13%)

Query: 930  GSLVQAEITEIKPL--ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
            G ++   I +I P    L ++ G   HGR+H TE+ D   + V+   S F  GQ V  ++
Sbjct: 40   GDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVD---SWVQEPISGFHEGQFVKCKV 96

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL---------FEEC-DVSIGQRVTGYV 1037
            +  S   +   S   +LS++ SM   S    +L          FE+  D+  G  V GYV
Sbjct: 97   LDVSRSSE--GSVRVDLSLRSSMCANSNQSRRLFDDSRIRTSRFEKINDLCPGTEVKGYV 154

Query: 1038 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1097
              V+++   + +SR ++A++ +  S      ++  Q  F +G  V G VLS   +   + 
Sbjct: 155  KSVNSKGCFIMVSRTIEARIIL--SNLSDEYVENPQNDFPVGLLVHGRVLSSEPQSGKVE 212

Query: 1098 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVH 1156
            + LR      S K+ DIS  ++    H GDI+ G++ ++ S   GL V I G  L    H
Sbjct: 213  VSLRKNTGSKSQKSDDISYSDL----HVGDIIAGQVKRVES--FGLFVTIQGSELVALCH 266

Query: 1157 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1216
             +EL            DE   D  S +  G  VK K+L+I         V + ++ S  G
Sbjct: 267  VSELS-----------DEPVLDIHSCHKAGDKVKAKILKIDEE---RHRVSIGMKKSYIG 312

Query: 1217 MSSTNSSDLSTDVD 1230
              ST   D S D D
Sbjct: 313  PDSTG--DTSDDED 324



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 10/188 (5%)

Query: 347 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 406
           ++ S FE +    +D+ PG  VKG V +V+S G  +     ++A   L ++S+  +  P 
Sbjct: 133 IRTSRFEKI----NDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQ 188

Query: 407 KKFKVGAELVFRVLGV--KSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             F VG  +  RVL    +S ++ V+  K T  KS+ +   SY++     I  G + ++E
Sbjct: 189 NDFPVGLLVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVE 248

Query: 464 KHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
             G FV      +      SEL  +P  +  S +  G  VK +I+       R+++   M
Sbjct: 249 SFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDKVKAKILKIDEERHRVSIG--M 306

Query: 523 KPTRVSED 530
           K + +  D
Sbjct: 307 KKSYIGPD 314


>gi|255581556|ref|XP_002531583.1| programmed cell death protein, putative [Ricinus communis]
 gi|223528779|gb|EEF30786.1| programmed cell death protein, putative [Ricinus communis]
          Length = 607

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/481 (79%), Positives = 420/481 (87%), Gaps = 16/481 (3%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
           MK+WGVVAEVNEKDLVI LPGGLRGLAR+ DALDP+  +EIE  E NL P+IF  GQLVS
Sbjct: 140 MKVWGVVAEVNEKDLVISLPGGLRGLARSVDALDPVFGDEIEDIEGNL-PSIFCTGQLVS 198

Query: 61  CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
           C VLQLD+DKK+ G RKI LSLRLSLL+KG SL+ +QEGMVLTAYVKSIEDHGYILHFGL
Sbjct: 199 CTVLQLDEDKKDSGTRKIRLSLRLSLLHKGFSLDAIQEGMVLTAYVKSIEDHGYILHFGL 258

Query: 121 PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 180
           PSFTGFLP+N+  E+S  +VK G LLQG+VR +D+TRKVVYLSSDP  VSKCV KDLKGI
Sbjct: 259 PSFTGFLPKNSQDESSSAEVKTGQLLQGIVRRVDKTRKVVYLSSDPSAVSKCVVKDLKGI 318

Query: 181 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
           SIDLLVPGMMV+ RVQS L NG+MLSFLTYF+GTVDIFHLQNTF  +NW++DYN +KKVN
Sbjct: 319 SIDLLVPGMMVNARVQSTLGNGIMLSFLTYFSGTVDIFHLQNTFSASNWRDDYNNNKKVN 378

Query: 241 ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
           ARILFVDP++RAVGLTLN +L+HN APP+HVKVGDIYD +KVVRVD+ +GLLL+IPS PV
Sbjct: 379 ARILFVDPSTRAVGLTLNQHLVHNHAPPTHVKVGDIYDGAKVVRVDKSMGLLLEIPSAPV 438

Query: 301 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 360
           STPAYV+               YKEGS VRVRILG+RHLEGLATGILKASAFEG VFTHS
Sbjct: 439 STPAYVS---------------YKEGSKVRVRILGYRHLEGLATGILKASAFEGPVFTHS 483

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           DVKPGMVV+ K+IAVDSFGAIVQFPGG+KALCPL HMSEFEI KP KKFKVGAEL+FRVL
Sbjct: 484 DVKPGMVVRAKIIAVDSFGAIVQFPGGLKALCPLRHMSEFEIAKPRKKFKVGAELLFRVL 543

Query: 421 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
           G KSKRITVTHKKTLVKSKLAILSSYAEATD LITHGWITKIEKHGCFV FYNGVQGFAP
Sbjct: 544 GCKSKRITVTHKKTLVKSKLAILSSYAEATDGLITHGWITKIEKHGCFVHFYNGVQGFAP 603

Query: 481 R 481
           R
Sbjct: 604 R 604



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            D+ P M+V+  +  V S G  +     L A   L ++S+  +  P K+F +G  +  RVL
Sbjct: 484  DVKPGMVVRAKIIAVDSFGAIVQFPGGLKALCPLRHMSEFEIAKPRKKFKVGAELLFRVL 543

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYGLFITIEN 1356
              +  SKR+ VT K    +T  +S++  LS+      G I  G I ++E +G F+   N
Sbjct: 544  GCK--SKRITVTHK----KTLVKSKLAILSSYAEATDGLITHGWITKIEKHGCFVHFYN 596



 Score = 41.2 bits (95), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
           VL  +S  + ++ K +L+ S   + S  +      + HG++  I + GCFV F   + GF
Sbjct: 542 VLGCKSKRITVTHKKTLVKSKLAILSSYAEATDGLITHGWITKIEKHGCFVHFYNGVQGF 601

Query: 655 APR 657
           APR
Sbjct: 602 APR 604


>gi|449502545|ref|XP_004161672.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Cucumis
           sativus]
          Length = 609

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/481 (72%), Positives = 405/481 (84%), Gaps = 15/481 (3%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
           MK WGVVAEVN+KDLVI LPGGLRGL  AA+A DPIL+ E+E  E +LLP +FHVGQLV 
Sbjct: 125 MKFWGVVAEVNKKDLVISLPGGLRGLVSAAEAFDPILEKEVEDTEHDLLPVMFHVGQLVP 184

Query: 61  CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
           C+VL++DDDKKE GKRKIWLSLRLS+LYK  +L+ +QEGMVLT+YVKSIEDHGYILHFGL
Sbjct: 185 CVVLKVDDDKKESGKRKIWLSLRLSILYKDFTLDLLQEGMVLTSYVKSIEDHGYILHFGL 244

Query: 121 PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 180
            SFTGFLP+   ++ S  +V  G LLQ VVRSID+TRKVVY SSD D VS  V KDLKGI
Sbjct: 245 TSFTGFLPKTKQSDQSENEVHVGQLLQCVVRSIDKTRKVVYFSSDQDIVSSSVAKDLKGI 304

Query: 181 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
           SIDLL+PGMMVS RVQS LENG++LSFLTYF GTVD+FHLQN+F ++NWK+ YNQ+ K+N
Sbjct: 305 SIDLLIPGMMVSARVQSTLENGILLSFLTYFNGTVDMFHLQNSFHSSNWKDFYNQNMKMN 364

Query: 241 ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
           ARILF+DP++RAVGLTL P+L+ N+A P H+++GDIYD +KVVRVDRG GLLL++PS+P 
Sbjct: 365 ARILFIDPSTRAVGLTLIPHLVRNKAAPPHLRIGDIYDSAKVVRVDRGFGLLLEVPSSPE 424

Query: 301 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 360
           STP +V+               +KEGS VRVRILGFRHLEGLA G LKASAFEG VF++S
Sbjct: 425 STPTFVS---------------FKEGSRVRVRILGFRHLEGLAIGTLKASAFEGPVFSYS 469

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           DVKPG +++ KVI VD FGAIVQFPGG+KALCPL HMSEFEIVKP KKFKVGAEL+FRVL
Sbjct: 470 DVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIVKPRKKFKVGAELIFRVL 529

Query: 421 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
           G KSKRITVTHKKTLVKSKL +LSSYA+AT  L+THGWITKI KHGCFVRFYNGVQGFAP
Sbjct: 530 GCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIXKHGCFVRFYNGVQGFAP 589

Query: 481 R 481
           R
Sbjct: 590 R 590



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 15/130 (11%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 591
           VK G+L+   V VV     +V     G  K   P  H+++          ++KP  +F  
Sbjct: 471 VKPGTLIRAKVIVVDDFGAIVQF--PGGLKALCPLSHMSEF--------EIVKPRKKFKV 520

Query: 592 --QLL--VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
             +L+  VL  +S  + ++ K +L+ S  ++ S  +      V HG++  I + GCFVRF
Sbjct: 521 GAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIXKHGCFVRF 580

Query: 648 LGRLTGFAPR 657
              + GFAPR
Sbjct: 581 YNGVQGFAPR 590



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            D+ P  +++  V  V   G  +     L A   LS++S+  +  P K+F +G  +  RVL
Sbjct: 470  DVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIVKPRKKFKVGAELIFRVL 529

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIEN 1356
              +  SKR+ VT K    +T  +S++  LS   +   G +  G I ++  +G F+   N
Sbjct: 530  GCK--SKRITVTHK----KTLVKSKLEVLSSYADATAGLVTHGWITKIXKHGCFVRFYN 582


>gi|308808252|ref|XP_003081436.1| rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri]
 gi|116059899|emb|CAL55958.1| rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri]
          Length = 1947

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1461 (32%), Positives = 798/1461 (54%), Gaps = 141/1461 (9%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI------------------LDNEIE 42
            +KL GVV+EV  + LV+ LP GLRG    A+A D                     D+E E
Sbjct: 118  VKLLGVVSEVTARGLVMSLPDGLRGTVARAEASDVFRGATRSAGAESADDESESSDDEFE 177

Query: 43   ANEDNL-LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 101
              E+ + L +++  GQ++ C+VL LD  K + G ++I LSLRL  +  G+  +++ EG V
Sbjct: 178  GEEETISLESLYEPGQVLRCVVLSLD--KGKTGGKRIELSLRLENVCAGIGKDSLVEGSV 235

Query: 102  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVY 161
              A VKSIEDHGYIL FG+   +GFLP+ ++A +  + ++ G +L  V+ +     K  +
Sbjct: 236  APAMVKSIEDHGYILDFGIAGTSGFLPKKSVAND--LTIRRGKILDVVITATPTGNKGYF 293

Query: 162  -LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 220
             ++SD   V+  V+ +    ++  L+PGM+V++RV+ +L +G++ SF+T+F+GTVD F  
Sbjct: 294  TVTSDQKRVTSSVSHETSATNVSTLLPGMLVNSRVKQVLADGILCSFMTFFSGTVDCFQT 353

Query: 221  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 280
             +   T    + +   +++ AR++FVD  ++ V LTL P+LL + +  +  K+G ++  +
Sbjct: 354  GSVATTKGVASAFKVGQRMRARVIFVDAVAKRVCLTLLPHLLEHTSI-TLPKLGKVFQTA 412

Query: 281  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 340
             + RVD G G+ L +        AY  +S +++E V K+EKK+K G  V VR++G R ++
Sbjct: 413  TIARVDAGQGVALSVSDGDDHIAAYAHVSQLSDERVEKVEKKFKIGRSVNVRVIGHRLMD 472

Query: 341  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
            G+ +  LK+S      F+  ++ PGM+V G+V+AV+ +GAIV+   G+KALCP  H+S+ 
Sbjct: 473  GIVSVSLKSSVMAQPFFSLEELTPGMLVNGEVVAVEHYGAIVKLAEGIKALCPPLHVSDI 532

Query: 401  EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 458
                   K   GA+L FRVL V   S+R TV+HK+TL+KS+L +++S  +A    +THG 
Sbjct: 533  VGRTTSSKVSPGAKLKFRVLNVDKNSRRATVSHKRTLIKSELPVIASLEDALPGAVTHGV 592

Query: 459  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 518
            +T + ++G F+  Y  ++G A  ++LGL    +PS  + VGQVV+  I+S+  AS R+ L
Sbjct: 593  VTGVNEYGVFISLYGDLRGLANVNDLGLLSDQKPSDAFGVGQVVRVTIVSA-DASGRLRL 651

Query: 519  S-------------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 565
            S              M+  +       + + + V   V   T N  VV+   KG   G I
Sbjct: 652  SLAAGVALEAKTPGLMINASAADLTPGIIVETAVVTHVSAQTGNVEVVFTAEKGNVPGII 711

Query: 566  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDAS 623
               HL+DH   AT + SV+ PG +   L+VL+ + +  +LS K SL+ S+Q  +LP+ A 
Sbjct: 712  ALAHLSDHPLTATGLSSVLNPGDKIGPLVVLEGKPTRAVLSRKLSLVESSQNSKLPASAE 771

Query: 624  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
               P SV  GYV +    G FVRFLG+LTG AP S+ VDG  AD+   + VG++V + +L
Sbjct: 772  EATPGSVFPGYVASATSAGVFVRFLGKLTGLAPPSQLVDGVSADIHDMFPVGKTVNALVL 831

Query: 684  DVNSETG--RITLSLKQSCCSS--TDASFMQEHF----LLEEKIAMLQSSKHNGSELKWV 735
             V++ T   R++LSLK S  SS  +DA  ++  F    LL+E++A   ++   G   +  
Sbjct: 832  AVDTSTSPPRLSLSLKLSATSSPLSDAPLIRSFFNDIELLDERVA---NADDVGISPETA 888

Query: 736  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT-VESGSVIQAAILDVA 794
            +    G+ ++  V+E+ ++GV++     S+  G +T HQL  +   ESG  ++  +LDV+
Sbjct: 889  KSLQPGTWMDVTVNETKEYGVLMDMAIDSNAVGLVTPHQLPESVEFESGDAVKCYVLDVS 948

Query: 795  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 854
            + E +VD+ +++  ++RF+    N+ A  K  KR     L V   V A VE+VK  Y V 
Sbjct: 949  RREGVVDMGMRS-GLERFKR---NKTASGKSLKR-----LKVGDEVTADVELVKAEYAVF 999

Query: 855  SLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET 913
            SLP+++  IGYASV   N + +   ++F   Q V A V  LP  +  GRLLL +      
Sbjct: 1000 SLPDHSGLIGYASVHHLNRSYEDATQRFTPAQRVKAIVAQLPDGAN-GRLLLTVPV---- 1054

Query: 914  ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 973
             T SS   K       G+LV+  ++EI+PL+  +       GR++I+E +  +    E  
Sbjct: 1055 -TISSSGGK----IAAGTLVKGVVSEIQPLQALVALPNNARGRLYISEFDLTE----EKP 1105

Query: 974  FSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1033
             ++  +G T+ A ++  +     ++  L +LS+            K  F    VS+G  +
Sbjct: 1106 LASVSVGSTIEATVLGLAG----ERGGLLDLSVH----------RKSAFSLDGVSVGDSL 1151

Query: 1034 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKE 1092
              YV  +  +   +T++  + + +  ++++ + SEL E  + RF IG+ V    + I   
Sbjct: 1152 NAYVLSITQDGLKVTVAPGVTSFIPKIETSDKASELSESLETRFVIGQRVRATAVDIKLN 1211

Query: 1093 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV---GGLVVQIGP 1149
            K+ + L LR                    F      VG ++  I++ V    G++VQIG 
Sbjct: 1212 KRRIDLTLR----------------TESVFGSNKVCVGAKLHGIVTRVVKHAGVMVQIGS 1255

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
            H +GR+H T+L            DE + +P + Y  G  V+ +VL +S     +  ++LS
Sbjct: 1256 HSFGRIHLTDLS-----------DELKEEPSASYAAGAVVQVRVLNVSP----SGEIDLS 1300

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
             R+S   MSS   + L  D +     ++ + +L P   ++GYVK  T KGCF+ LSR +D
Sbjct: 1301 TRASR--MSS--KTILPEDAE-----VQDVANLVPGQRIKGYVKATTKKGCFVALSRSID 1351

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1329
            A   LSNL+D ++  P   FP GKLV GR++S +    RVE++L+  ++ +   +++   
Sbjct: 1352 AMCKLSNLADDFIADPIASFPPGKLVQGRIVSADAAKGRVEISLRERENSSQGNADV--- 1408

Query: 1330 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-DNIETIYRAGEKVKV 1388
            S + VG +++G ++RV+ YG+FI ++ T L GLCH+S  ++  + D++    R GE+V+V
Sbjct: 1409 SGVDVGSVMMGTVRRVQPYGVFIGLDGTKLSGLCHISMFADARINDDLSLHVRQGERVRV 1468

Query: 1389 KILKVDKEKRRISLGMKSSYF 1409
            K+L+++ E ++ISLG K+S F
Sbjct: 1469 KVLEINAETKKISLGCKASLF 1489



 Score =  313 bits (802), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 156/324 (48%), Positives = 217/324 (66%), Gaps = 20/324 (6%)

Query: 1476 VNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA- 1534
            VN+D + PD             +AK + ++     KK+ KE +E EI   E+ L + DA 
Sbjct: 1636 VNVDSDNPD-------------DAKPLSKRE----KKRLKEAKELEILQKEQALRDGDAV 1678

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P +  EFE+L+ +SP SSF+W++YMAF +S     +AR +AERA+  I   EE E++NIW
Sbjct: 1679 PESAMEFEKLLIASPRSSFLWVRYMAFHVSCGAYAEAREVAERAIVAIPASEETERMNIW 1738

Query: 1595 VAYFNLENEYGNP-PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1653
             AY NLEN+YG P PEEAV K+F RA+Q  + K +H+ L+ +YER  Q +  ++ L K  
Sbjct: 1739 AAYLNLENKYGTPTPEEAVKKLFTRAVQLSNAKHLHMTLISMYERNGQQQSLEDALKKAA 1798

Query: 1654 KKFKHSCKVWLRRVQR-LLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            KKF +S KVWL  ++  +LK   E  + ++ RA  +LP+HKHIK + +TA+ E K G  +
Sbjct: 1799 KKFSYSTKVWLAYIRAAVLKGNSEWARQLLDRATQALPKHKHIKILMRTALFEMKEGNPE 1858

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
            RGR+MFEGIL  YP+RTD+WS+Y+DQEI+ GDV  IR LFERA  L L  K MKFLFK+Y
Sbjct: 1859 RGRTMFEGILRNYPRRTDIWSVYIDQEIKQGDVLRIRALFERATHLDLNAKSMKFLFKRY 1918

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYV 1796
            L++E+S G++ERI +VKQ+AMEYV
Sbjct: 1919 LDFERSEGDDERIAHVKQRAMEYV 1942


>gi|301097567|ref|XP_002897878.1| rRNA biogenesis protein rrp5 [Phytophthora infestans T30-4]
 gi|262106626|gb|EEY64678.1| rRNA biogenesis protein rrp5 [Phytophthora infestans T30-4]
          Length = 1882

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/1920 (30%), Positives = 940/1920 (48%), Gaps = 243/1920 (12%)

Query: 1    MKLWGVVAEVNE-KDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLV 59
            M L G V ++ + +DL+I LP  L G      AL+   D+           T+F VGQ V
Sbjct: 86   MLLLGCVRQITDGQDLMISLPNKLNGTV----ALNECSDD-----------TLFKVGQFV 130

Query: 60   SCIVLQLDDDKKEIGKRK-IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF 118
             C+VL       + GKRK I LSLR SLL+  LS  ++ +G  L A V S+EDHG I++ 
Sbjct: 131  PCVVLATG----KTGKRKQIHLSLRTSLLHAELSPGSLTKGTSLHATVSSVEDHGAIVNL 186

Query: 119  GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK 178
            G+     F+PR  L   +    K   LL  VV S++       ++ D   V K VT+   
Sbjct: 187  GIRGVHAFVPRKELTTPAH---KGQHLLVNVV-SMNMHTNTATVTIDRSQVVKAVTRG-D 241

Query: 179  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT-NWKNDYNQHK 237
              ++  LVPGM+++ RV+ +LENG+ ++FL++F+ TV+  H+  + P    W+  Y +  
Sbjct: 242  SFTLKQLVPGMLLNVRVEDVLENGLSVTFLSFFSATVEQNHM--SLPCERGWEESYRKGM 299

Query: 238  KVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS 297
            K  ARI+ +D  ++ + L++ P+++H + P S    GDI +++ + R+D G+G+LL + S
Sbjct: 300  KARARIVSIDYIAKQITLSMAPHVVHLQVPESLFSAGDIIEEATIERIDVGIGMLLSLKS 359

Query: 298  T---------------------PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 336
                                      P YV IS+V+++ V KLEKK+  GS ++ R+LGF
Sbjct: 360  QDEDVDMEDASDKKENTTNAKWKAFAPGYVHISNVSDKRVDKLEKKFTVGSSIKCRVLGF 419

Query: 337  RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 396
               + +A+      +    V  H D+KPG  V GK+++V+S+G +++   GV+ L    H
Sbjct: 420  SPFDAVASVSCTEHSISQTVLRHKDLKPGTKVNGKILSVESWGILMEISEGVRGLVTSQH 479

Query: 397  MSEFEIVKPGK--KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDR 452
            M  F + K     K+K G     RVL V   + +  +T K  L+ S L +LSS+ EAT  
Sbjct: 480  MPAFLLNKKANSGKYKAGKTTSARVLHVDLDANKTYLTMKSGLLSSDLPVLSSFKEATMG 539

Query: 453  LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQVVKCRIMSSIP 511
            LI HG+ITKI ++G  V FYN V G  P + L    G E     Y  GQVVK R+     
Sbjct: 540  LIAHGFITKIGEYGVIVTFYNNVYGLVPMAVLQ-QAGIENLEEAYVPGQVVKARVTRCDA 598

Query: 512  ASRRINLSFMM-------KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 564
              +R+ LSF         KPT   E     +G+ ++ V  +   +     V  K   +G 
Sbjct: 599  NRKRLMLSFDTTSNSSGNKPTAAPEIASKLVGTKITNV-KITDVDTTCFRVQTKDGMEGV 657

Query: 565  IPTEHLADHLEHATVMKSVIKPGYEFD----QLLVLDNESSN-LLLSAKYSLINSAQQ-- 617
            +P   L D   + +++  ++K     D     LLV+  ES   L+LS K  L+  A +  
Sbjct: 658  LPFVQLTDFPRNTSLVDKIVKRFSAGDVISEPLLVVSQESDGVLMLSKKPLLLEFASRKA 717

Query: 618  -LPSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRS---KAVDGQRADLSKTY 672
             LP     +  N+V+ GYV ++ +  G FV+FL  L   AP+    +   GQ  +  + +
Sbjct: 718  ILPRTFRDVQENAVLIGYVTSVNVSKGVFVKFLNNLVAVAPKGFLKEQFVGQIDE--EMF 775

Query: 673  YVGQSVRSNILDVNSETGRITLSLKQS-------CCSSTDASFMQEHFLLEEKIAMLQSS 725
             +G++V  ++  ++ E  +  +  +QS         +    +F Q +  L E     Q+S
Sbjct: 776  EIGETVTCSVAKMDKEKKQFVVGFQQSNFVLPTNSTNKARPAFFQAY--LRE-----QAS 828

Query: 726  KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAGATVESGS 784
              N +E+K    F +G   + +      +G V + E +   V   +          + G 
Sbjct: 829  VRNAAEVK-KSPFALGKSEKTEFVGVRPYGAVFALETDEETVTVLVPSVTEKNNEWDEGD 887

Query: 785  VIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 844
             ++  + D        D S K V+     E+     ++K +++++  K  G       + 
Sbjct: 888  TVKLLLTDY-------DFS-KNVYYGAADESLVKSGSKKSRKQKQRVKTGGKIAAATVLA 939

Query: 845  EIVKENYLVLSLPEYNHS----IGYASVSDY--NTQKFPQKQFLNGQSVIATVM------ 892
                E Y V+S P+  ++     G   + D+   +Q   Q     G S+   V+      
Sbjct: 940  VSPTEKYAVVSFPDPQNADLLQFGVVQLCDFWCPSQTSSQLGIEVGASIECRVVQPSLKS 999

Query: 893  ---ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD-----VGSLVQAEITEI--KP 942
               + P    A   L   + +++T+ SS K + K   Y      +G+++   I+ I    
Sbjct: 1000 VSNSTPFDDLALLALEEEELVAKTKASSRKTSSKVPKYTQEDLVLGNILTGVISGISENS 1059

Query: 943  LELRL---KFGIGFHGRIHITEVN--DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 997
            +E+R+   K        + I +VN  D+KS    + F  + +  TVT R+IA S K   K
Sbjct: 1060 MEIRVETHKKAGKVRATVSIVDVNGIDEKSGH-SHPFDRYSVNTTVTGRVIAVSAKGANK 1118

Query: 998  ----------KSFLWELS------------------IKPSMLTVSEIGSKLLFEECDVSI 1029
                      K    +LS                  ++P  L  S  G  LL E      
Sbjct: 1119 LKPVSEENPAKFHALQLSLRSEDVAGDEKVEDVQRFVRPDWLEGSA-GRALLKE------ 1171

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            G  V G V   D +   + +S ++   L  ++ + +   ++EFQ ++ +GK V   VL +
Sbjct: 1172 GNSVEGVVSDQDADHLTVKLSGNVTGTLSCVEVSEDVDVVREFQGKYPVGKRVKCFVLQV 1231

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV--GGLVVQI 1147
            + EKK + L +           +  S+   Q  +  G IV G IS   S +    ++VQI
Sbjct: 1232 DDEKKTVDLSV-----------IHASSAQSQAVVKSGTIVNGVISTKKSAIRPPSIMVQI 1280

Query: 1148 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1207
            G H +GRV  TEL+    +D L          L  +  G+ V+C VL  S       H++
Sbjct: 1281 GVHTFGRVCITELQTKWENDMLE---------LPKFSVGKVVRCVVLSTSNN-----HID 1326

Query: 1208 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1267
            LSLR   D + S  +           K   K  + +   +V   V   TS GCF+ + R 
Sbjct: 1327 LSLRE--DALDSPKAY---------AKKSSKSAERNVGDLVPAIVATTTSSGCFVRVDRH 1375

Query: 1268 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1327
              A+V+L +LSD +V+ P+ +FP GKLVAGRV   +   + +E++LK S    +    + 
Sbjct: 1376 TTARVMLRDLSDDFVKDPQTQFPSGKLVAGRV--TKKSDRGLELSLKAS--VVSDDVSVF 1431

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-IETIYRAGEKV 1386
              S+L  G  V G I +V++YG+F+ IE T + GLCH+SE++++ V   ++ I+  G+ V
Sbjct: 1432 KWSDLKEGLTVKGTITKVQTYGVFVRIEKTTISGLCHISEVADEKVTQPLDQIFSEGDYV 1491

Query: 1387 KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA 1446
            K K+LKV  E RR+S G+K SYF+                         +  +++ S  A
Sbjct: 1492 KAKVLKV--EDRRVSFGLKPSYFEAPV----------------------KKPVIKRSKPA 1527

Query: 1447 VQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKN 1506
              ++D+    G     +  E  ++  P+E + D     +   +          +  DE+ 
Sbjct: 1528 TMEIDL----GDDESSSDDEEASNAAPVEFSWDGFSDVLSKKVDSKDDDDSSDEEDDEEE 1583

Query: 1507 NRHAKKKEKEEREQ--EIRAAEERLL--EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1562
              ++ K  K+ R Q  E  A  E+ L   +D P++  ++ERL+  SP SS++WI++MAF 
Sbjct: 1584 AANSSKSSKKNRLQSDEWVALREKALASNEDVPQSASDYERLLAVSPQSSYLWIQFMAFH 1643

Query: 1563 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1622
            +S+ D++ AR +A RA   ++ R+E EK+N+WVAY NLE+++G+  + + ++VF+ ALQ 
Sbjct: 1644 VSLTDIDLARDVAVRATSAVSFRDEKEKMNVWVAYLNLEHDFGD--DASFLRVFKSALQV 1701

Query: 1623 CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA-V 1681
              PK+V+L L+ LY R E+++   + L  M KKF+ S + W+R +Q L+ Q+Q    A  
Sbjct: 1702 NHPKRVYLHLIDLYARAEEHEDVKQTLATMQKKFRTSKQTWIRSLQYLVGQKQFAEAAET 1761

Query: 1682 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1741
            +QR+L SL  HKH+  I +   L ++ G  D+ R++FEGIL+ YPKR DLW++YLD+EI+
Sbjct: 1762 LQRSLKSLAAHKHLPVILKYGQLLYEQGELDKARTIFEGILANYPKRMDLWNVYLDKEIK 1821

Query: 1742 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
             GDV L+R LFER +++    KKMKFLFKKYL++E+  G++E +E+VKQ A ++V S  A
Sbjct: 1822 FGDVALVRALFERLLAMEFSAKKMKFLFKKYLQFEQDQGDDEHVEHVKQLAKDFVASAAA 1881


>gi|432113019|gb|ELK35597.1| Protein RRP5 like protein [Myotis davidii]
          Length = 1877

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/1888 (30%), Positives = 921/1888 (48%), Gaps = 191/1888 (10%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANED----NLLPTIF 53
            M++ G V EVNE +LVI LP GL+G  +    +DA    L+ ++E  E       LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEISDAYTKKLNEQVEQEEPLKDLASLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L   +K  GK+ + LSL    + K LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITEK--GKKSVKLSLNPQNVNKVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  V++ +     VV LS     
Sbjct: 202  YLVDIGVGGARAFLPLQKAQEYIRQKNKGAKLKVGQYLHCVIKEVKGNGGVVSLSIGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL++FTG VD  HL+     T 
Sbjct: 262  VSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPLGLTLNFLSFFTGLVDFMHLEPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRV 285
            + N     + V A +L V P +RAV L+L P  L    P + +    +G + D + V   
Sbjct: 322  FSN-----QAVRACVLSVHPRTRAVRLSLRPVFLQPGRPLTQLSCQHLGAVLDDAPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FSKAGATFRLKDGSL---AYARLSHLSDSKKTFNPEAFKPGNTHKCRIINYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D+KPG +VKG V+ +  +G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQFLGYHDIKPGALVKGTVLTIKPYGMLVKVSEQIRGLVPPMHLADIPMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTLV+SKL  ++ Y      L THG+I +++
Sbjct: 494  EKKYHIGDEVTCRVLLCDPEAKKLMMTLKKTLVESKLPAITCYDNTKPGLQTHGFILRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNDVQGLVPKHELSAEYVPDPEKVFYTGQVVKVAVLNCEPSKERMLLSFRLL 613

Query: 523  ---KPTRVSEDD----LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
               K   V +       V +G LV   V   T + + V V+        +PT HL+DH+ 
Sbjct: 614  SDPKKEHVGQSQKKRKAVNVGQLVDVKVLEKTKDGLEVTVLPHNIP-AFLPTSHLSDHVA 672

Query: 576  HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHG 633
            +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S IHP  ++ G
Sbjct: 673  NGPLLHHWLQAGDTLHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKTFSEIHPGMLLIG 732

Query: 634  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            +V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R+ 
Sbjct: 733  FVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRML 792

Query: 694  LSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVH 749
            LSL+ S C+  D +          LEE+  +     +  S L + +     G V++ +V 
Sbjct: 793  LSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMVLDLEVQ 852

Query: 750  ESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            E  + G VV F E   V G +   + +  AG  VESG   +A IL+V   +  V +SL  
Sbjct: 853  EVLEDGSVV-FSE-GPVPGLVLRASKYHRAGQEVESGQKKKAVILNVDMLKLEVHVSLCH 910

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              +        NR+A+K K+ RE       HQ   AIV+ ++E++ V SL E  H   ++
Sbjct: 911  DLV--------NRKAKKLKKGRE-------HQ---AIVQHLEESFAVASLVETGHLAAFS 952

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA---- 921
              S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R     
Sbjct: 953  LTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRQTRKDSET 1010

Query: 922  ---------------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
                           KKK +  +G +V   +  IKP  + +    G  G IH + + DD 
Sbjct: 1011 VDEDDEGDPCMVVGFKKKHTLSIGDMVTGTVKSIKPTHVVVTLENGIIGCIHASHILDDV 1070

Query: 967  SNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPSML------ 1011
                    +  K+G+ VTAR+I     K++K  P     F+    ELS++PS+L      
Sbjct: 1071 PEGTSPT-ARLKVGKKVTARVIGGRDVKTSKFLPISHPRFIRTIPELSVRPSVLEKDGHA 1129

Query: 1012 TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1069
             ++      L +      GQ VT ++  Y V  +W  + I+  ++ ++ +L  +     L
Sbjct: 1130 ALNTHSVSPLEKIKQYQAGQTVTCFLKKYNVIKKWLEVEIAPDIRGRIPMLLISLSFKVL 1189

Query: 1070 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1129
            +   ++F IG+A+   V+  +  K  L L L             I    ++    +G++ 
Sbjct: 1190 KHPDKKFQIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE----KGEVA 1232

Query: 1130 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1189
             GR+ K+     GL V       GRV         VSD    Y E    PL  +   + V
Sbjct: 1233 MGRVVKVTPN-KGLTVSFPFGRTGRVSI-----FHVSD---SYSEA---PLEDFIPEKIV 1280

Query: 1190 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1249
            +C VL  +  V     + LSLRSS         ++  T    P   +  I+D+    +++
Sbjct: 1281 RCYVLSTADEV-----LTLSLRSS--------RTNPETKSKVPDPEINSIQDVQEGQLLR 1327

Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------EKEFPIGKLVAGRVLSVE 1303
            GYVK+V   G  + L   +   V L+        SP      E+  P GKL+  +VLSV 
Sbjct: 1328 GYVKSVQPHGVLLGLGPSV---VGLAQYPRVSRHSPLEKALYERYLPEGKLLTAKVLSVN 1384

Query: 1304 PLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
                 VE++   SD+        +  LS L  G+  +   +R          +  N    
Sbjct: 1385 HQKNLVELSFLPSDTGKPDVFPASPGLSPLKQGEKQVEVEERDHKGKEEKEKKKKNQKRK 1444

Query: 1363 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEE 1422
               ++  ++     E    + EK + +    +K+ +R      S   + +    + +  E
Sbjct: 1445 EQRNQKGQE-----EAQLPSKEKKEPQKPHAEKQGKRPHRESASEQERANKKQKKAAPAE 1499

Query: 1423 ESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLE------- 1475
            E D  +E               V  ++ + E ED   L   +    A VP L+       
Sbjct: 1500 EDDSGVE---------------VYYREGEEEVEDISVLPKGKQTRPAEVPRLQLSSGFVW 1544

Query: 1476 -VNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE--KEEREQEIRAAEERLLEK 1532
             V L+   P +      +    DE      +  +  K++E  K++ E+E+   EE L++ 
Sbjct: 1545 DVGLESLTPALPPRRESSDSEEDEKPQQTTQKKKSKKERELEKQKAEKELSRMEEALMDP 1604

Query: 1533 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1591
               P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1605 GRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1664

Query: 1592 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1651
            N+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1665 NVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLQLADIYTKSEKFQEAGELYNR 1722

Query: 1652 MIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710
            M+K+F+    VW++    LL++ Q G    V+QRAL  LP+ +H+  IS+ A LEF+ G 
Sbjct: 1723 MLKRFRQEKAVWVKYGAFLLRRGQAGASHRVMQRALECLPQKEHVDVISKFAQLEFQLGD 1782

Query: 1711 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1770
            A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK
Sbjct: 1783 AERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFK 1842

Query: 1771 KYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            +YL+YEK  G E+ ++ VK KA++YVE+
Sbjct: 1843 RYLDYEKQHGTEKDVQAVKAKALDYVEA 1870


>gi|348680504|gb|EGZ20320.1| hypothetical protein PHYSODRAFT_490560 [Phytophthora sojae]
          Length = 1892

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/1928 (29%), Positives = 944/1928 (48%), Gaps = 251/1928 (13%)

Query: 1    MKLWGVVAEVNE-KDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLV 59
            M L G V +V + +DL+I LP  L G    A+  D                +IF VGQ V
Sbjct: 88   MLLLGCVRQVTDGQDLMISLPNKLNGTVALAECSDD---------------SIFKVGQFV 132

Query: 60   SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG 119
             C+VL      K   +++I LSLR SLL+  LS+ ++ +G  L A V S+EDHG I++ G
Sbjct: 133  PCVVLATSKTDK---RKQIQLSLRTSLLHAELSVASLTKGASLHATVSSVEDHGAIVNLG 189

Query: 120  LPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG 179
            +     F+PR  LA      V  G  L   V S++       ++ D  TV K VT+    
Sbjct: 190  IRGVHAFVPRKELAA----PVLKGQHLLVSVLSMNAHTNTATVTIDRSTVVKAVTRG-DS 244

Query: 180  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT-NWKNDYNQHKK 238
             ++  LVPGM+++ RV+ +LENG+ ++FLT+FT TV+  H+  + P    W+  + +  K
Sbjct: 245  FTLKQLVPGMLLNVRVEDVLENGLSVTFLTFFTATVEQNHM--SLPCERGWEESFRKGMK 302

Query: 239  VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 298
              ARI+ +D  ++ + L++ P+++H + P S   VGDI +++ + R+D G+G+LL + S 
Sbjct: 303  ARARIMSIDYIAKQITLSIAPHVVHMQVPDSPYSVGDIIEEATIERIDAGVGMLLSLKSK 362

Query: 299  PVS------------------------TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 334
                                        P YV IS+V+++ V KLEKKY  GS ++ R+L
Sbjct: 363  TSQDEDVEMEDASEKKESTTNAKWKAFAPGYVHISNVSDKRVDKLEKKYTVGSSIKCRVL 422

Query: 335  GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 394
            GF   + +     K SA    V  H D+ PG  V G +++V+S+G +++   GV+ L   
Sbjct: 423  GFSPFDAVVNISCKESALSQTVLRHKDLAPGTKVSGIILSVESWGILMEISEGVRGLVNP 482

Query: 395  PHMSEFEIVKPGK---KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEA 449
             HM  F + K      K+KVG     RVL V  ++K+  +T K  L+ S+L +LSS+ EA
Sbjct: 483  QHMPAFLLNKKANNNGKYKVGKVASARVLHVDLEAKKTFLTMKSGLLASELPVLSSFEEA 542

Query: 450  TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQVVKCRIMS 508
               LI HG+ITKI ++G  V FYN V G  P + L    G E     Y +GQVVK R+  
Sbjct: 543  KMDLIAHGYITKIAEYGVIVTFYNNVYGLVPMAVLQ-QAGIENLEEAYVIGQVVKARVTR 601

Query: 509  SIPASRRINLSFMMKPTRVSEDDLVK-------LGSLVSGVVDVVTPNAVVVYVIAKGYS 561
              P+ +R+ LSF     +               +G  ++ V  +    A    V      
Sbjct: 602  CDPSKKRLMLSFDTTSNKSGNAPTAAPETAAELVGKTITNV-KITDVEATCFRVQTADGM 660

Query: 562  KGTIPTEHLADHLEHATVMKSVIKPGYEFDQ----LLVLDNESSNLL-LSAKYSLINSAQ 616
            +G +P   L D     +++  ++K     D     LLV+  ES  +L LS K  L+  A 
Sbjct: 661  EGVLPFVQLTDFPRQTSLVDEIVKGFSAGDMISEPLLVVAQESDGVLTLSKKPLLLEFAS 720

Query: 617  Q---LPSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 672
            +   LP     +  N+V+ GYV ++ +  G FV+FL  L   AP+    +   +++ +  
Sbjct: 721  RSAILPRTFGDVQENAVLIGYVTSVNVAKGVFVKFLNNLVAVAPKGFLKEEFVSEIEEGM 780

Query: 673  Y-VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ-EHFLLEEKIAMLQSSKHNGS 730
            + +G++V  ++  V+    +  +  KQ        +F+Q  +   + ++A  Q+     +
Sbjct: 781  FEIGETVTCSVESVDKAKKQFVVGFKQ-------GNFVQVTNATNKARLAYFQAYLREQA 833

Query: 731  ELKWVEGFIIGSVIEGKVHESN-----DFGVVVSFEEHSD-VYGFITHHQLAGATVESGS 784
             ++        S   GK  ++       +G V + E+  + V   +          + G 
Sbjct: 834  AVRSAAAAKKASFALGKTEKAEFVGVRPYGAVFALEKDEETVTVLVPSVTEKNNEWDEGD 893

Query: 785  VIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 844
             ++  + D        D S K V+     E+     +++ +++++  K  G  +    + 
Sbjct: 894  SVKLLLTDY-------DFS-KNVYYAAADESLVKSGSKRSRKQKQRVKAGGKIEAAKVVA 945

Query: 845  EIVKENYLVLSLPEYNHS----IGYASVSDY--NTQKFPQKQFLNGQSV----IATVMAL 894
                E Y V+S P+  ++     G   + D+   +Q   Q     G SV    + + +  
Sbjct: 946  VSPTEKYAVVSFPDAQNADLLHFGVVELCDFWCPSQTSGQLGIEVGASVECRVVQSTLKS 1005

Query: 895  PSSSTAGRLLLLL-----KAISETETSSSKRAKKKSSYDVGSL--------VQAEITEIK 941
             S+ST    L+LL     K +S+ +  + K A K   Y    L        V A I+E  
Sbjct: 1006 GSNSTPFDDLVLLALAEEKLVSKAKKDTRKSASKLPKYSPNDLTLGNTLTGVIAGISE-N 1064

Query: 942  PLELRLKFG--IG-FHGRIHITEVND-DKSNVVENLFSNFKIGQTVTARIIAKSNK---- 993
             +E+R++ G  +G     + I +V+  D+     + F  + +   VT R+IA + K    
Sbjct: 1065 SMEIRVETGKKVGKVRATVSIVDVDGIDEKYGHAHPFDKYSVNAAVTGRVIAVTAKGANK 1124

Query: 994  --PDMKKSFLWELSIKPSMLT--------VSEI-------------GSKLLFEECDVSIG 1030
              P  K++     +I+ S+ T        V+++             G  LL E      G
Sbjct: 1125 LKPVSKENPATFHAIQLSLRTEDVAGDEKVTDVQRFVRPDWLEGSAGRALLKE------G 1178

Query: 1031 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1090
              V G V     +   + +S ++   L  ++ + +   ++ FQ +F +GK V   VL ++
Sbjct: 1179 NSVDGIVSDQGADQLTIKLSSNVTGTLSCVEVSEDVEVVRAFQDKFPVGKRVKCFVLQVD 1238

Query: 1091 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV--GGLVVQIG 1148
             EKK + L L           +  S+   +  +  G I+ G ISK  S +    ++VQ+G
Sbjct: 1239 DEKKTVDLSL-----------IHSSSAQDKAVVKPGSIINGVISKKKSAIRPPSIMVQLG 1287

Query: 1149 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1208
             H +GRV        CV++ L+ ++    + L  +  G+ V+C VL  +       H++L
Sbjct: 1288 AHTFGRV--------CVTELLAKWENNMLE-LPQFAAGKVVRCVVLSNNNN-----HIDL 1333

Query: 1209 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
            SLR   D ++  N  + +     P +    + DL P +     V + ++ GCF+ + R  
Sbjct: 1334 SLRK--DALA--NPKEYAKKTSKPAER--GVGDLVPAV-----VASTSTTGCFVRVDRHT 1382

Query: 1269 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1328
             A+V+L +LSD +V+ P++ FP GKLVAGRV   +   + +E++LK S    +    +  
Sbjct: 1383 TARVMLRDLSDDFVKDPQEHFPTGKLVAGRV--TKKSDRGLELSLKAS--VVSEDVSVFK 1438

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-IETIYRAGEKVK 1387
             ++L  G  V G + +V++YG+F+ IE + + GLCH+SE++++ V   ++ I+  G+ VK
Sbjct: 1439 WNDLKEGLTVKGTVTKVQTYGVFVRIEKSTISGLCHISEVADEKVTQPLDQIFSEGDYVK 1498

Query: 1388 VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAV 1447
             K+LKVD   RR+S G+K SYF+ +                         +    +    
Sbjct: 1499 AKVLKVDG--RRVSFGLKPSYFEGET-----------------------PAKKPAAKKVA 1533

Query: 1448 QDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNN 1507
            + + ME + G     ++ E  +   P+E + D        G S       EAK  DE ++
Sbjct: 1534 KPVAMEIDLGDDESSSEDEDASGAAPVEFSWD--------GFSNALNKKTEAKDDDESSS 1585

Query: 1508 -----------RHAKKKEKEEREQEIRAAEERLLEK--DAPRTPDEFERLVRSSPNSSFV 1554
                       + +K K+   +  E  A  E+ L    + P++  ++ERL+  SP SS++
Sbjct: 1586 EDEDDEEEEAAKSSKSKKNRLQSDEWVALREKALASSDEVPQSASDYERLLAVSPQSSYL 1645

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            WI+YMAF +S+ +V+ AR +A RA   ++ R+E EKLN+WVAY NLE+++G+  + + ++
Sbjct: 1646 WIQYMAFHISLTEVDLARDVAVRATSAVSFRDEKEKLNVWVAYMNLEHDFGD--DASFLR 1703

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1674
            VF+ ALQ   PK+V+L L+ LY R ++++   + L  M KKF+ S + W+R +Q L+ ++
Sbjct: 1704 VFKSALQVNHPKRVYLHLVDLYARADEHEDVKQTLATMQKKFRTSKQTWIRSLQYLVGEK 1763

Query: 1675 QEGVQA-VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
                 A  +QR+L SL  HKH+  I +   L ++ G  D+ R++FEGIL+ YPKR DLW+
Sbjct: 1764 LFAEAAETLQRSLKSLSAHKHLPVILKYGQLLYEQGELDKARTIFEGILANYPKRMDLWN 1823

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +YLD+EI+ GDV L+R LFER +++    KKMKFLFKKY+++E+  G++E +E+VKQ A 
Sbjct: 1824 VYLDKEIKFGDVALVRALFERLLAMDFSAKKMKFLFKKYMQFEQDQGDDEHVEHVKQLAK 1883

Query: 1794 EYVESTLA 1801
            ++V S  A
Sbjct: 1884 DFVASAAA 1891


>gi|431895473|gb|ELK04989.1| Protein RRP5 like protein [Pteropus alecto]
          Length = 2041

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/1919 (29%), Positives = 927/1919 (48%), Gaps = 254/1919 (13%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 249  MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVAQEEPLKDLVHLPELF 308

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L   ++  GK+ + LSL    + K LS E ++ GM+LT  V S+EDHG
Sbjct: 309  SPGMLVRCVVSSLGITER--GKKSVKLSLNPKNVNKVLSAEALKPGMLLTGTVSSLEDHG 366

Query: 114  YILHFGLPSFTGFLPRN-----NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP       N  +N G  +K G  L  ++  +  +  VV LS D   
Sbjct: 367  YLVDIGVGGARAFLPLQKAQEYNRQKNKGAKLKVGQYLNCIIEEVKGSGGVVTLSIDHSE 426

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  ++Q +   G+ L+FL++FTG VD  HL      T 
Sbjct: 427  VSTAIATEEQNWTLNNLLPGLVVKAQIQKVTPLGLTLNFLSFFTGLVDFMHLDPKKAGT- 485

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVV 283
                Y  ++ V A +L V P +R V L+L P  LH      R    H+  G + D   V 
Sbjct: 486  ----YCSNQAVRACVLCVHPRTRVVRLSLRPVFLHPGRSLTRLTCQHL--GAVLDDVPVQ 539

Query: 284  RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 343
                  G    +    +   AY  +S +++ +     + +K G+  + RI+ F  ++ LA
Sbjct: 540  SFFNKAGATFRLKDGSL---AYARLSHLSDSKTVFSPEAFKPGNTHKCRIIDFSQMDELA 596

Query: 344  TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 403
               L+ S  E   F + D+KPG +VKG V+ +  +G +V     ++ L P  H+++ ++ 
Sbjct: 597  VLSLRTSIIEAQYFRYHDIKPGALVKGTVLTIKPYGMLVNVGEQIRGLVPPMHLADIQMK 656

Query: 404  KPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 461
             P KK+ +G E+  RVL    ++K++ +T KKTLV+SKL  ++ YA+A   L THG+I +
Sbjct: 657  NPEKKYHIGDEVTCRVLLCDPEAKKLMITLKKTLVESKLPAITCYADAKPGLQTHGFILR 716

Query: 462  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
            ++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  PA  R+ LSF 
Sbjct: 717  VKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVAVLNCEPARERMLLSFK 776

Query: 522  M--KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
            +  +P +        +   V +G LV   V   T + + V V+        +PT HL+DH
Sbjct: 777  LLGEPEKERAGHSQKKRKAVNIGQLVDVKVLEKTRDGLEVAVLPHNIP-AFLPTSHLSDH 835

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      ++L  K +L+++ +  Q P   S I P  ++
Sbjct: 836  VANGPLLYHWLQAGDTLHRVLCLSQSEGRIILCRKPALVSTMEGGQDPKSFSEIQPGMLL 895

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 896  IGFVKSIKDYGVFIQFPSGLSGLAPKAVMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQR 955

Query: 692  ITLSLKQSCCSSTDASFMQEHF---LLEE--KIAMLQSSKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C+  D +          LEE   +  L S++ +   ++ +     G V++ 
Sbjct: 956  MLLSLRLSDCALGDLATTSLLLLSQCLEEWQGVRSLMSNR-DSVLIQTLAEMTPGMVLDL 1014

Query: 747  KVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +V E  + G V+ F E   V G +   + +  AG  VESG   +A IL+V   +  V +S
Sbjct: 1015 EVQEVLEDGSVI-FSE-GPVPGLVLRASKYHRAGQEVESGQKKKAVILNVDMLKLEVHVS 1072

Query: 804  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 863
            L    +        NR+A+K K+  E       HQ   AIV+ ++E++ + SL E  H  
Sbjct: 1073 LCHNLV--------NRKAKKLKKGSE-------HQ---AIVQHLEESFAIASLVETGHLA 1114

Query: 864  GYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 922
             ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   + K ++
Sbjct: 1115 AFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRRTQKDSE 1174

Query: 923  -----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 965
                             KK +  +G +V   +  +KP  + +    G  G IH + + DD
Sbjct: 1175 TVDEDDEADPAMVVGTLKKHTLSIGDMVTGTVKSVKPTHVVVTLKDGIIGCIHASHILDD 1234

Query: 966  KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML-- 1011
               V     +  K+G+TVTAR+I      DMK   FL            ELS++PS L  
Sbjct: 1235 -VPVGTCPTAKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSELEK 1290

Query: 1012 ---TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYE 1065
               T     S    E+      GQ VT ++  Y V  +W  + ++  ++ ++ IL ++  
Sbjct: 1291 DGHTALNTHSVSPSEKIKQYQAGQTVTCFLKKYNVVKKWLEVEVAPDIRGRIPILLTSLS 1350

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1125
               L+   ++F IG+A+   V+  +  K  L L L             I    ++    +
Sbjct: 1351 FKVLKHPDKKFQIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE----K 1393

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            G++  GR+ K+                     T  K + VS P      G+   L    +
Sbjct: 1394 GEVAMGRVVKV---------------------TPKKGLTVSFPF-----GKIGTLWRGSQ 1427

Query: 1186 GQFV-----------------KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1228
            G  +                 +C VL  +  V     + LSLRSS         ++  T 
Sbjct: 1428 GPLLSPEMLKSQCFFLFCCHSRCYVLSTAGHV-----LTLSLRSS--------RTNPETK 1474

Query: 1229 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1288
               P   +  I+D+    +++GYVK+V   G  + L   +   V L+        SP K+
Sbjct: 1475 SKIPDPEINSIQDIEEGQLLRGYVKSVEPHGVLLGLGPSV---VGLAQYPHVSQYSPSKK 1531

Query: 1289 ------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1342
                   P GKL+  +VLSV      VE++    D+         ++    +G  ++ Q 
Sbjct: 1532 TLYNRHLPEGKLLTAKVLSVSHQKNLVELSFLPGDTGRP------DVFPASLGLPLLKQD 1585

Query: 1343 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR--- 1399
            +R                      +L  +  D+       GEK + K  +  KEK+    
Sbjct: 1586 ER----------------------QLEAEERDH------KGEKKEQKKNQPRKEKKNQKG 1617

Query: 1400 -----ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLE--NSSVAVQDMDM 1452
                 +    KS   K  A         ES +  E +    +++  E  +S V V   + 
Sbjct: 1618 QEEEPLPSKEKSEPQKPRARKQGKRPRPESGKEQERMKKQKKAAPSEEDDSGVEVYYREG 1677

Query: 1453 ESEDGGSLVLAQIESR-ASVPPL--------EVNLDDEQPDMDNGISQNQGHTDE--AKT 1501
            E E    ++LA+ ++R A VP L        +V LD   P +      +    DE   + 
Sbjct: 1678 EEETETRVLLAEKQTRPAEVPRLKLSSGFVWDVGLDSLTPALPPRGESSDSEEDEKSQQA 1737

Query: 1502 IDEKNNRHAKKKEKEEREQEIRAAEERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYMA 1560
              +K ++  ++ EK++ E+E+   EE L++ K  P + D+F+RLV SSPNSS +W++YMA
Sbjct: 1738 TQKKKSKKERELEKQKAEKELSRIEEALMDPKRQPESADDFDRLVLSSPNSSILWLQYMA 1797

Query: 1561 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1620
            F L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+
Sbjct: 1798 FHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAV 1855

Query: 1621 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQ 1679
            QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q E   
Sbjct: 1856 QYNEPLKVFLQLADIYTKSEKFQEASELYNRMLKRFRQEKTVWIKYGAFLLRRGQAEASH 1915

Query: 1680 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1739
             V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  
Sbjct: 1916 RVMQRALECLPNKEHVDVIAKFAQLEFQLGDAERAKALFENTLSIYPKRTDVWSVYIDMT 1975

Query: 1740 IRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1976 IKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQSVKAKALEYVEA 2034


>gi|426366071|ref|XP_004050088.1| PREDICTED: protein RRP5 homolog [Gorilla gorilla gorilla]
          Length = 1871

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1894 (29%), Positives = 908/1894 (47%), Gaps = 209/1894 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S IH   ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHAGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  TGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     G  ++ 
Sbjct: 793  MLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAKMTPGMFLDL 851

Query: 747  KVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL 
Sbjct: 852  VVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQKVESGQKKKVVILNVDLLKLEVHVSLH 911

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
               +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   +
Sbjct: 912  QDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAF 953

Query: 866  ASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-- 922
            +  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R    
Sbjct: 954  SLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPTRKDSE 1011

Query: 923  -----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 965
                             KK +  +G +V   +  IKP  + +    G  G IH + + DD
Sbjct: 1012 TVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDD 1071

Query: 966  KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML- 1011
                  +  +  K+G+ VTAR+I      DM K+F +             ELS++PS L 
Sbjct: 1072 VPEGT-SATTKLKVGKMVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSELE 1126

Query: 1012 ---TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYE 1065
               T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++  
Sbjct: 1127 DGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLS 1186

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIH 1124
               L+   ++F +G+A+   V+  +  K  L L L  P +                  + 
Sbjct: 1187 FKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTGPHK------------------LE 1228

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG++  GR+ K+    G         L     F ++  + +      Y E    PL  + 
Sbjct: 1229 EGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPLEDFV 1276

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
              + V+C VL  +  V     + LSLR      SS  + +  + V+ P   +  I+D+  
Sbjct: 1277 PQKVVRCYVLSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKE 1323

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGR 1298
              +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL+  R
Sbjct: 1324 GQLLRGYVGSIRPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKLLTAR 1380

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTA---SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
            VL +      VE++    D+      S S    L+    G     +  +          E
Sbjct: 1381 VLRLNHQKNLVELSFLPGDTGKPDVLSASLEGPLTKQEEGKTEAEERDQKGEKKNQKRNE 1440

Query: 1356 NTNLVGLCHVSELSED--HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
              N  G   V   S++       +   R G + +    +   E+ R+S   K +    + 
Sbjct: 1441 KKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKPKKASLSEED 1496

Query: 1414 DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPP 1473
            D+L      E  E  EE    ++    E  +   +   ++   G +  +       ++PP
Sbjct: 1497 DSLVDVYYREGKEEAEETNVLSK----EKQTKPAEAPRLQLSSGFAWNVGLDSLTPALPP 1552

Query: 1474 LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1533
            L  + D E+                    DEK ++  KKK K+ERE E + AE+ L   +
Sbjct: 1553 LAESSDSEE--------------------DEKPHQAMKKKSKKERELEKQKAEKELSRIE 1592

Query: 1534 --------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1585
                     P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ R
Sbjct: 1593 EALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFR 1652

Query: 1586 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1645
            EE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A
Sbjct: 1653 EEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEA 1710

Query: 1646 DELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAIL 1704
             EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I++ A L
Sbjct: 1711 GELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQL 1770

Query: 1705 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1764
            EF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +RG+FER I LSL PK+
Sbjct: 1771 EFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRGIFERVIHLSLAPKR 1830

Query: 1765 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1831 MKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|119570024|gb|EAW49639.1| programmed cell death 11, isoform CRA_a [Homo sapiens]
          Length = 1872

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/1890 (29%), Positives = 915/1890 (48%), Gaps = 200/1890 (10%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     G  ++ 
Sbjct: 793  MLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDL 851

Query: 747  KVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL 
Sbjct: 852  VVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLH 911

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
               +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   +
Sbjct: 912  QDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAF 953

Query: 866  ASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-- 922
            +  S  N T +F  ++   GQ V  T+       T   L +   A   T   + K ++  
Sbjct: 954  SLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETV 1013

Query: 923  ---------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
                           KK +  +G +V   +  IKP  + +    G  G IH + + DD  
Sbjct: 1014 DEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVP 1073

Query: 968  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML--- 1011
                   +  K+G+TVTAR+I      DM K+F +             ELS++PS L   
Sbjct: 1074 EGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSELEDG 1128

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1129 HTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1188

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIHEG 1126
             L+   ++F +G+A+   V+  +  K LL L L  P +                  + EG
Sbjct: 1189 VLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK------------------LEEG 1230

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            ++  GR+ K+    G         L     F ++  + +      Y E    PL  +   
Sbjct: 1231 EVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPLEDFVPQ 1278

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+D+    
Sbjct: 1279 KVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQ 1325

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVL 1300
            +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL+  RVL
Sbjct: 1326 LLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKLLTARVL 1382

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
             +      VE++    D+      + + LS    G +   + ++ E+       E  N  
Sbjct: 1383 RLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERDQKGEKKNQK 1437

Query: 1361 GLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
                 ++  ++ V+            +   R G + +    +   E+ R+S   K +   
Sbjct: 1438 RNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKPKKAGLS 1493

Query: 1411 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1470
             + D+L      E  E  EE     +    E  +   +   ++   G +  +       +
Sbjct: 1494 EEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGLDSLTPA 1549

Query: 1471 VPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLL 1530
            +PPL  + D E+ +  +  +Q             K ++  ++ EK++ E+E+   EE L+
Sbjct: 1550 LPPLAESSDSEEDEKPHQATQI------------KKSKKERELEKQKAEKELSRIEEALM 1597

Query: 1531 EKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            +    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE E
Sbjct: 1598 DPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQE 1657

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL 
Sbjct: 1658 KLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELY 1715

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
             +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I++ A LEF+ 
Sbjct: 1716 NRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQL 1775

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1768
            G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF 
Sbjct: 1776 GDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFF 1835

Query: 1769 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1836 FKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1865


>gi|70980549|ref|NP_055791.1| protein RRP5 homolog [Homo sapiens]
 gi|145559523|sp|Q14690.3|RRP5_HUMAN RecName: Full=Protein RRP5 homolog; AltName: Full=NF-kappa-B-binding
            protein; Short=NFBP; AltName: Full=Programmed cell death
            protein 11
 gi|119570026|gb|EAW49641.1| programmed cell death 11, isoform CRA_c [Homo sapiens]
 gi|225000512|gb|AAI72442.1| Programmed cell death 11 [synthetic construct]
          Length = 1871

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1897 (29%), Positives = 913/1897 (48%), Gaps = 215/1897 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     G  ++ 
Sbjct: 793  MLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDL 851

Query: 747  KVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL 
Sbjct: 852  VVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLH 911

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
               +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   +
Sbjct: 912  QDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAF 953

Query: 866  ASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-- 922
            +  S  N T +F  ++   GQ V  T+       T   L +   A   T   + K ++  
Sbjct: 954  SLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETV 1013

Query: 923  ---------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
                           KK +  +G +V   +  IKP  + +    G  G IH + + DD  
Sbjct: 1014 DEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVP 1073

Query: 968  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML--- 1011
                   +  K+G+TVTAR+I      DM K+F +             ELS++PS L   
Sbjct: 1074 EGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSELEDG 1128

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1129 HTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1188

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIHEG 1126
             L+   ++F +G+A+   V+  +  K LL L L  P +                  + EG
Sbjct: 1189 VLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK------------------LEEG 1230

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            ++  GR+ K+     GL V           F ++  + +      Y E    PL  +   
Sbjct: 1231 EVAMGRVVKVTPN-EGLTVSFP--------FGKIGTVSIFHMSDSYSE---TPLEDFVPQ 1278

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+D+    
Sbjct: 1279 KVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQ 1325

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVL 1300
            +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL+  RVL
Sbjct: 1326 LLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKLLTARVL 1382

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
             +      VE++    D+      + + LS    G +   + ++ E+       E  N  
Sbjct: 1383 RLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERDQKGEKKNQK 1437

Query: 1361 GLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
                 ++  ++ V+            +   R G + +    +   E+ R+S   K +   
Sbjct: 1438 RNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKPKKAGLS 1493

Query: 1411 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1470
             + D+L      E  E  EE     +    E  +   +   ++   G +  +       +
Sbjct: 1494 EEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGLDSLTPA 1549

Query: 1471 VPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLL 1530
            +PPL  + D E+                    DEK ++   KK K+ERE E + AE+ L 
Sbjct: 1550 LPPLAESSDSEE--------------------DEKPHQATIKKSKKERELEKQKAEKELS 1589

Query: 1531 EKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1582
              +         P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI
Sbjct: 1590 RIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTI 1649

Query: 1583 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1642
            + REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ 
Sbjct: 1650 SFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKF 1707

Query: 1643 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQT 1701
            + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I++ 
Sbjct: 1708 QEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKF 1767

Query: 1702 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1761
            A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL 
Sbjct: 1768 AQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLA 1827

Query: 1762 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1828 PKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|410251480|gb|JAA13707.1| programmed cell death 11 [Pan troglodytes]
 gi|410295644|gb|JAA26422.1| programmed cell death 11 [Pan troglodytes]
          Length = 1871

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1899 (29%), Positives = 912/1899 (48%), Gaps = 219/1899 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  RVQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEQQSWNLNNLLPGLVVKARVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVINCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     +  G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINTGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     G  ++ 
Sbjct: 793  MLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDL 851

Query: 747  KVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL 
Sbjct: 852  VVREVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLH 911

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
               +        NR+A+K ++  E       HQ   A+V+ +++++ + SL E  H   +
Sbjct: 912  QDLV--------NRKARKLRKGSE-------HQ---AVVQHLEKSFAIASLVETGHLAAF 953

Query: 866  ASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-- 922
            +  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R    
Sbjct: 954  SLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPTRKDSE 1011

Query: 923  -----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 965
                             KK +  +G +V   +  IKP  + +    G  G IH + + DD
Sbjct: 1012 TVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDD 1071

Query: 966  KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML- 1011
                     +  K+G+TVTAR+I      DM K+F +             ELS++PS L 
Sbjct: 1072 VPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSELE 1126

Query: 1012 ---TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYE 1065
               T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++  
Sbjct: 1127 DGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLS 1186

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIH 1124
               L+   ++F +G+A+   V+  +  K  L L L  P +                  + 
Sbjct: 1187 FKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTGPHK------------------LE 1228

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG++  GR+ K+     GL V           F ++  + +      Y E    PL  + 
Sbjct: 1229 EGEVAMGRVVKVTPN-EGLTVSFP--------FGKIGTVSIFHMSDSYSE---TPLEDFV 1276

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
              + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+D+  
Sbjct: 1277 PQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKE 1323

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGR 1298
              +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL+  R
Sbjct: 1324 GQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKTLYNKHLPEGKLLTAR 1380

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VL +      VE++    D+      + + LS    G +   + ++ E+       E  N
Sbjct: 1381 VLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEKRDQKGEKKN 1435

Query: 1359 LVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1408
                   ++  ++ V+            +   R G++ +    +   E+ R+S   K + 
Sbjct: 1436 QKRNEKKNQKGQEEVEMPSKEEQQPQKPQAQKRGGQECR----ESGSEQERVSKKPKKAG 1491

Query: 1409 FKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESR 1468
               + D+L      E  E  EE     +    E  +   +   ++   G +  +      
Sbjct: 1492 LSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGLDSLT 1547

Query: 1469 ASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEER 1528
             ++PPL  + D E+                    DEK ++   KK K+ERE E + AE+ 
Sbjct: 1548 PALPPLAESSDSEE--------------------DEKPHQATIKKSKKERELEKQKAEKE 1587

Query: 1529 LLEKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            L   +         P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+
Sbjct: 1588 LSRIEEALMDPGWQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALK 1647

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E
Sbjct: 1648 TISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSE 1705

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFIS 1699
            + + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I+
Sbjct: 1706 KFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIA 1765

Query: 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759
            + A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LS
Sbjct: 1766 KFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLS 1825

Query: 1760 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            L PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1826 LAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|1136430|dbj|BAA11502.1| KIAA0185 [Homo sapiens]
          Length = 1884

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/1897 (29%), Positives = 911/1897 (48%), Gaps = 215/1897 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 97   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 156

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 157  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 214

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 215  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 274

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 275  VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 334

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 335  FSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 389

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 390  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 446

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 447  SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 506

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 507  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 566

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 567  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 626

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 627  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 685

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 686  VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 745

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 746  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 805

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     G  ++ 
Sbjct: 806  MLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDL 864

Query: 747  KVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL 
Sbjct: 865  VVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLH 924

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
               +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   +
Sbjct: 925  QDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAF 966

Query: 866  ASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-- 922
            +  S  N T +F  ++   GQ V  T+       T   L +   A   T   + K ++  
Sbjct: 967  SLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETV 1026

Query: 923  ---------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
                           KK +  +G +V   +  IKP  + +    G  G IH + + DD  
Sbjct: 1027 DEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVP 1086

Query: 968  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML--- 1011
                   +  K+G+TVTAR+I      DM K+F +             ELS++PS L   
Sbjct: 1087 EGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSELEDG 1141

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1142 HTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1201

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIHEG 1126
             L+   ++F +G+A+   V+  +  K  L L L  P +                  + EG
Sbjct: 1202 VLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTGPHK------------------LEEG 1243

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            ++  GR+ K+    G         L     F ++  + +      Y E    PL  +   
Sbjct: 1244 EVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPLEDFVPQ 1291

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+D+    
Sbjct: 1292 KVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQ 1338

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVL 1300
            +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL+  RVL
Sbjct: 1339 LLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKLLTARVL 1395

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
             +      VE++    D+      + + LS    G +   + ++ E+       E  N  
Sbjct: 1396 RLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERDQKGEKKNQK 1450

Query: 1361 GLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
                 ++  ++ V+            +   R G + +    +   E+ R+S   K +   
Sbjct: 1451 RNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKPKKAGLS 1506

Query: 1411 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1470
             + D+L      E  E  EE     +    E  +   +   ++   G +  +       +
Sbjct: 1507 EEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGLDSLTPA 1562

Query: 1471 VPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLL 1530
            +PPL  + D E+                    DEK ++   KK K+ERE E + AE+ L 
Sbjct: 1563 LPPLAESSDSEE--------------------DEKPHQATIKKSKKERELEKQKAEKELS 1602

Query: 1531 EKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1582
              +         P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI
Sbjct: 1603 RIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTI 1662

Query: 1583 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1642
            + REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ 
Sbjct: 1663 SFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKF 1720

Query: 1643 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQT 1701
            + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I++ 
Sbjct: 1721 QEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKF 1780

Query: 1702 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1761
            A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL 
Sbjct: 1781 AQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLA 1840

Query: 1762 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1841 PKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1877


>gi|168272922|dbj|BAG10300.1| RRP5 protein homolog [synthetic construct]
          Length = 1871

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1897 (29%), Positives = 912/1897 (48%), Gaps = 215/1897 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     G  ++ 
Sbjct: 793  MLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDL 851

Query: 747  KVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL 
Sbjct: 852  VVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLH 911

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
               +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   +
Sbjct: 912  QDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAF 953

Query: 866  ASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-- 922
            +  S  N T +F  ++   GQ V  T+       T   L +   A   T   + K ++  
Sbjct: 954  SLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETV 1013

Query: 923  ---------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
                           KK +  +G +V   +  IKP  + +    G  G IH + + DD  
Sbjct: 1014 DEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVP 1073

Query: 968  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML--- 1011
                   +  K+G+TVTAR+I      DM K+F +             ELS++PS L   
Sbjct: 1074 EGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSELEDG 1128

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1129 HTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1188

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIHEG 1126
             L+   ++F +G+A+   V+  +  K  L L L  P +                  + EG
Sbjct: 1189 VLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTGPHK------------------LEEG 1230

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            ++  GR+ K+     GL V           F ++  + +      Y E    PL  +   
Sbjct: 1231 EVAMGRVVKVTPN-EGLTVSFP--------FGKIGTVSIFHMSDSYSE---TPLEDFVPQ 1278

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+D+    
Sbjct: 1279 KVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQ 1325

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVL 1300
            +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL+  RVL
Sbjct: 1326 LLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKLLTARVL 1382

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
             +      VE++    D+      + + LS    G +   + ++ E+       E  N  
Sbjct: 1383 RLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERDQKGEKKNQK 1437

Query: 1361 GLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
                 ++  ++ V+            +   R G + +    +   E+ R+S   K +   
Sbjct: 1438 RNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKPKKAGLS 1493

Query: 1411 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1470
             + D+L      E  E  EE     +    E  +   +   ++   G +  +       +
Sbjct: 1494 EEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGLDSLTPA 1549

Query: 1471 VPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLL 1530
            +PPL  + D E+                    DEK ++   KK K+ERE E + AE+ L 
Sbjct: 1550 LPPLAESSDSEE--------------------DEKPHQATIKKSKKERELEKQKAEKELS 1589

Query: 1531 EKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1582
              +         P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI
Sbjct: 1590 RIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTI 1649

Query: 1583 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1642
            + REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ 
Sbjct: 1650 SFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKF 1707

Query: 1643 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQT 1701
            + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I++ 
Sbjct: 1708 QEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKF 1767

Query: 1702 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1761
            A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL 
Sbjct: 1768 AQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLA 1827

Query: 1762 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1828 PKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|332835295|ref|XP_508013.3| PREDICTED: protein RRP5 homolog [Pan troglodytes]
 gi|410355317|gb|JAA44262.1| programmed cell death 11 [Pan troglodytes]
          Length = 1871

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1899 (29%), Positives = 912/1899 (48%), Gaps = 219/1899 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVINCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     +  G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINTGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     G  ++ 
Sbjct: 793  MLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDL 851

Query: 747  KVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL 
Sbjct: 852  VVREVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLH 911

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
               +        NR+A+K ++  E       HQ   A+V+ +++++ + SL E  H   +
Sbjct: 912  QDLV--------NRKARKLRKGSE-------HQ---AVVQHLEKSFAIASLVETGHLAAF 953

Query: 866  ASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-- 922
            +  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R    
Sbjct: 954  SLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPTRKDSE 1011

Query: 923  -----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 965
                             KK +  +G +V   +  IKP  + +    G  G IH + + DD
Sbjct: 1012 TVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDD 1071

Query: 966  KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML- 1011
                     +  K+G+TVTAR+I      DM K+F +             ELS++PS L 
Sbjct: 1072 VPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSELE 1126

Query: 1012 ---TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYE 1065
               T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++  
Sbjct: 1127 DGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLS 1186

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIH 1124
               L+   ++F +G+A+   V+  +  K  L L L  P +                  + 
Sbjct: 1187 FKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTGPHK------------------LE 1228

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG++  GR+ K+     GL V           F ++  + +      Y E    PL  + 
Sbjct: 1229 EGEVAMGRVVKVTPN-EGLTVSFP--------FGKIGTVSIFHMSDSYSE---TPLEDFV 1276

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
              + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+D+  
Sbjct: 1277 PQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKE 1323

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGR 1298
              +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL+  R
Sbjct: 1324 GQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKTLYNKHLPEGKLLTAR 1380

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VL +      VE++    D+      + + LS    G +   + ++ E+       E  N
Sbjct: 1381 VLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEKRDQKGEKKN 1435

Query: 1359 LVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1408
                   ++  ++ V+            +   R G++ +    +   E+ R+S   K + 
Sbjct: 1436 QKRNEKKNQKGQEEVEMPSKEEQQPQKPQAQKRGGQECR----ESGSEQERVSKKPKKAG 1491

Query: 1409 FKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESR 1468
               + D+L      E  E  EE     +    E  +   +   ++   G +  +      
Sbjct: 1492 LSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGLDSLT 1547

Query: 1469 ASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEER 1528
             ++PPL  + D E+                    DEK ++   KK K+ERE E + AE+ 
Sbjct: 1548 PALPPLAESSDSEE--------------------DEKPHQATIKKSKKERELEKQKAEKE 1587

Query: 1529 LLEKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            L   +         P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+
Sbjct: 1588 LSRIEEALMDPGWQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALK 1647

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E
Sbjct: 1648 TISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSE 1705

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFIS 1699
            + + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I+
Sbjct: 1706 KFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIA 1765

Query: 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759
            + A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LS
Sbjct: 1766 KFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLS 1825

Query: 1760 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            L PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1826 LAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|354500197|ref|XP_003512187.1| PREDICTED: protein RRP5 homolog [Cricetulus griseus]
 gi|344252409|gb|EGW08513.1| Protein RRP5-like [Cricetulus griseus]
          Length = 1870

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/1896 (29%), Positives = 917/1896 (48%), Gaps = 214/1896 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E+ L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTQKLNEQVTQEEPLEDLLRLPDLF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  LD  ++  GK+ + LS+    + K LS E ++  M+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLDITER--GKKSVKLSVNPKHVNKVLSAEALRPRMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FL  +   E     N G ++K G  L  +V  +     VV LS +   
Sbjct: 202  YLVDIGVSGTRAFLSLHKAQEYIRQKNKGANLKIGQYLTCLVDEVKSNGAVVGLSIEHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            +S     + +  +++ L+PG++V  +VQ + E G+ L+FLT+FTG VD  HL+       
Sbjct: 262  ISSAFATEEQSWNLNNLLPGLVVKAQVQKVTEFGLQLNFLTFFTGLVDFMHLE-----PK 316

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
                Y+  + V A IL + P +R V L+L P  L    P + +   ++G + D+  V   
Sbjct: 317  KIGAYSSKQTVKACILCIHPRTRVVRLSLRPVFLQPGRPLTRISYQQLGAVLDKVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K GS  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGAL---AYARLSHLSDSKKTFNPEAFKPGSTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S       ++ D+K G VVKG V+A+  FG +V+    ++ L P  H+ +  +  P
Sbjct: 434  SLRKSIITAQFLSYHDIKTGTVVKGTVLAIKPFGILVKVGEQMRGLVPSMHLGDIMMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL+ SKL  +  Y +A   L THG I +++
Sbjct: 494  EKKYHLGDEVKCRVLLCDPEAKKLIMTLKKTLITSKLPAIMCYEDAKPGLQTHGVIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
             +GC V+FYN VQG  P+ EL      +P  +++ GQVVK  +++S P+  R+ LSF + 
Sbjct: 554  SYGCIVKFYNSVQGLVPKHELSDQHIPDPEKVFYTGQVVKVAVLNSEPSKERLLLSFKLL 613

Query: 524  PTRVSEDD----------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                 ++D           V +G LV   V   T + + V ++    +   +PT HL+DH
Sbjct: 614  SDSEPKNDSVEISQKKGRAVNIGQLVDVKVLEKTKDGLEVAILPHN-TPAFLPTPHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I P  ++
Sbjct: 673  VANGPLLHHWLQAGDTLHRVLCLSQGEKHILLCRKPALVSTVEGGQDPKSLSEIQPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G FV+F   L G AP++   D      S  + VGQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFVQFPSGLNGLAPKAIMSDKFVTTPSDHFVVGQTVVAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S CS  D +      LL + +  LQ      S  +   ++ +     G V++ 
Sbjct: 793  MLLSLRLSDCSLGDPA-STSFILLCQCLEELQGVRSLMSNQDSVLMQTLAEMTPGMVLDV 851

Query: 747  KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
             V E  + G VV      D+    + +  AG  V SG   +  +L V   +  V +SL+ 
Sbjct: 852  MVQEVLEDGSVVFSGHVPDLILKASRYHRAGQEVASGQKRRVVVLHVDMLKLEVHVSLRQ 911

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              + R           K ++ R++S+    HQ    IV+ ++E++ V SL E    + ++
Sbjct: 912  DLVHR-----------KARKLRKSSR----HQ---GIVQHLEESFAVASLMETGQLVAFS 953

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK----------AISETET 915
              S  N T  F  ++   GQ V  T+       T   L+L ++          A  ++ET
Sbjct: 954  LTSHLNDTFHFDSEKLHVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTSTPARRDSET 1011

Query: 916  SSSK-----------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
            +  K           R KKK    +G  V   I  +K   + +    G  G IH + + D
Sbjct: 1012 ADDKEEEEENSDLTVRTKKKHGLAIGDKVTGTIKSVKATHVVVTLEDGIIGCIHASRILD 1071

Query: 965  DKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSIKPSML---- 1011
            D   V  +  +  K+G+ VTAR+I     K++K  P     F   + ELSI+PS L    
Sbjct: 1072 D-VPVGTSPTTTLKVGEKVTARVIGGRDLKTSKFLPISHPRFVLTILELSIRPSELKKDG 1130

Query: 1012 -TVSEIGSKLLFEECD-VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             +     S+   E+ +    GQ VT +   Y    +W  + ++  ++ ++ +L ++    
Sbjct: 1131 YSALNTHSESPLEKTEQYQAGQTVTCFFKKYNAIKKWLEVDVAPDIRGRIPLLLTSLSFK 1190

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEG 1126
             L+   + F +G+A+   V+  +  K  L L ++ P++                  + +G
Sbjct: 1191 VLKHPDKMFQVGQALRATVVGSDVPKAFLCLSLIGPYK------------------LEQG 1232

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            +I  GR+  ++    GL +      +G+V    L    VSD    Y E     L  +   
Sbjct: 1233 EIAMGRVLSVVPN-KGLTISFP---FGKVGKVSL--FHVSD---SYSEAL---LEDFFPQ 1280

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            + V+C VL     V     + LSLR      SS  + +  + V+ P   +  I+D+    
Sbjct: 1281 KIVRCYVLSTEHHV-----LTLSLR------SSRTNRETKSKVEDP--EINSIQDVKEGQ 1327

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-----FPIGKLVAGRVLS 1301
            +++GYVK+V S G  + L   +      S++S      PEKE      P GKLV  +VL 
Sbjct: 1328 LLRGYVKSVLSHGVLVELGPSVVGLAQYSHVSQ--CRPPEKELYDSYLPKGKLVTAKVLR 1385

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
            V P   +VE++L  SD+                               LF       L+ 
Sbjct: 1386 VNPERSQVELSLLPSDTGKPD---------------------------LFSASPEPPLLN 1418

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1421
                    E+  +  +   R GE+ K +  K   +K +    + S   K    + Q   +
Sbjct: 1419 -------GEERKEGAKERVRKGEEKKSQKRKEKNQKGQEEAELSSQEKKESQRHRQ--GK 1469

Query: 1422 EESDEAIEEVGSYN----RSSLLENSSVAVQDMDMESED----GGSLVLAQIESRASVPP 1473
             E  E + E    N    +S   E     V+    E ED     G L + +    A VP 
Sbjct: 1470 RERHEPVSEQERVNKRPKKSGTPEEDDSGVEVYYREGEDEMEQPGVLPMGKQTKPAEVPR 1529

Query: 1474 LE--------VNLDDEQPDM-DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRA 1524
            L+        V LD   P +   G S +    ++     +K  +  ++ EK++ E+E+  
Sbjct: 1530 LQLSSGFVWDVGLDSLTPALPPRGESSDSEEDEKPHQAKKKKGKKERELEKQKAEKELSR 1589

Query: 1525 AEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1583
             EE L++    P + D+F+RL  S+PNSS +W++YMAF L   ++EKAR++AERAL+TI+
Sbjct: 1590 IEEALMDPGRQPESADDFDRLGLSTPNSSILWLQYMAFHLQATEIEKARAVAERALKTIS 1649

Query: 1584 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1643
             REE EKLN+WVA  NLEN YG+  +E+++KVF+RA+QY +P KV L L  +Y ++E+ K
Sbjct: 1650 FREEQEKLNVWVALLNLENMYGS--QESLMKVFERAVQYNEPLKVFLHLADIYTKSEKFK 1707

Query: 1644 LADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTA 1702
             A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +H+  IS+ A
Sbjct: 1708 EAGELYSRMLKRFRQEKAVWIKYGAFVLGRSQAGTSHRVLQRALECLPTKEHVDVISKFA 1767

Query: 1703 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1762
             LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL P
Sbjct: 1768 QLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAP 1827

Query: 1763 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            K+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1828 KRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1863


>gi|119570025|gb|EAW49640.1| programmed cell death 11, isoform CRA_b [Homo sapiens]
          Length = 1872

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/1893 (28%), Positives = 912/1893 (48%), Gaps = 206/1893 (10%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL-----PSDASHIHPN 628
            + +  ++   ++ G    ++L L      ++     + I  A+++     P + S IHP 
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGRVV---SLTGICGAEEVEGGQDPKNFSEIHPG 729

Query: 629  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
             ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E
Sbjct: 730  MLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEE 789

Query: 689  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSV 743
              R+ LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     G  
Sbjct: 790  KQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMF 848

Query: 744  IEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 802
            ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +
Sbjct: 849  LDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHV 908

Query: 803  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 862
            SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H 
Sbjct: 909  SLHQDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHL 950

Query: 863  IGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 921
              ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   + K +
Sbjct: 951  AAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDS 1010

Query: 922  K-----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
            +                 KK +  +G +V   +  IKP  + +    G  G IH + + D
Sbjct: 1011 ETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILD 1070

Query: 965  DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML 1011
            D         +  K+G+TVTAR+I      DM K+F +             ELS++PS L
Sbjct: 1071 DVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSEL 1125

Query: 1012 ----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAY 1064
                T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++ 
Sbjct: 1126 EDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSL 1185

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFI 1123
                L+   ++F +G+A+   V+  +  K LL L L  P +                  +
Sbjct: 1186 SFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK------------------L 1227

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
             EG++  GR+ K+    G         L     F ++  + +      Y E    PL  +
Sbjct: 1228 EEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPLEDF 1275

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
               + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+D+ 
Sbjct: 1276 VPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIK 1322

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAG 1297
               +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL+  
Sbjct: 1323 EGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKLLTA 1379

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            RVL +      VE++    D+      + + LS    G +   + ++ E+       E  
Sbjct: 1380 RVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERDQKGEKK 1434

Query: 1358 NLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            N       ++  ++ V+            +   R G + +    +   E+ R+S   K +
Sbjct: 1435 NQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKPKKA 1490

Query: 1408 YFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIES 1467
                + D+L      E  E  EE     +    E  +   +   ++   G +  +     
Sbjct: 1491 GLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGLDSL 1546

Query: 1468 RASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEE 1527
              ++PPL  + D E+ +  +  +Q             K ++  ++ EK++ E+E+   EE
Sbjct: 1547 TPALPPLAESSDSEEDEKPHQATQI------------KKSKKERELEKQKAEKELSRIEE 1594

Query: 1528 RLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1586
             L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ RE
Sbjct: 1595 ALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFRE 1654

Query: 1587 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1646
            E EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A 
Sbjct: 1655 EQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAG 1712

Query: 1647 ELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILE 1705
            EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+  I++ A LE
Sbjct: 1713 ELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLE 1772

Query: 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765
            F+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+M
Sbjct: 1773 FQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRM 1832

Query: 1766 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            KF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1833 KFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1865


>gi|255082708|ref|XP_002504340.1| predicted protein [Micromonas sp. RCC299]
 gi|226519608|gb|ACO65598.1| predicted protein [Micromonas sp. RCC299]
          Length = 2018

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 467/1534 (30%), Positives = 770/1534 (50%), Gaps = 182/1534 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGL---ARAADALDPILDNEIEANEDNL--------- 48
            MK+ GVV EVN++ L + LP GL+G    A A+D L P      +  + +          
Sbjct: 85   MKVLGVVTEVNDRGLTVSLPNGLKGTVTRAEASDVLAPASKRGKKGPDGDDPSEASESES 144

Query: 49   --------------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 94
                          L ++F VGQ++ C V QL   K   G ++I LS RLS +   +S  
Sbjct: 145  ESEEEDEDEDERLDLTSMFQVGQILRCKVRQLGKGKS--GGKRIDLSTRLSQVCSNISGH 202

Query: 95   TVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGIDVKPGLLLQGVV--- 150
            ++ +GM + A V S+EDHGY+L FG   S TGFLPR +  ++    +  G +L  V+   
Sbjct: 203  SLTDGMAVPACVNSVEDHGYVLSFGCSDSPTGFLPRKSCPQSLVDTLVRGSILDVVIAGD 262

Query: 151  --RSIDRTRK-----VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 203
              +   R R      V+  ++DP  V++ VT +  G ++  L+PGM+V+ RV+++L +G+
Sbjct: 263  EGKDGKRARSKGPGGVMQCTADPKRVAQAVTHEGDGAAMSTLLPGMLVNARVKAVLADGL 322

Query: 204  MLSFLTYFTGTVDIFHLQNTF--PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 261
             ++F+TYFT TVD FH+         +    +   ++V AR+L+VD  ++ VGLTL P+L
Sbjct: 323  QMNFMTYFTATVDAFHVGGGVHGAAPDPAAAHKTGERVRARVLYVDAAAKRVGLTLRPHL 382

Query: 262  LHNRA---PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS---TPAYVTISDVAEEE 315
            +   A     +  K G I++ + V RVD  +G+LL++ S   +   T  Y  ISD A+E 
Sbjct: 383  VTLEASVRAGAMPKPGTIFETAVVRRVDTAIGVLLELKSENENVHPTFGYCHISDAADEH 442

Query: 316  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 375
            + KLEK++K G  VR R++G R ++ +AT   K++  +    +  ++ PGM V+G+V+AV
Sbjct: 443  LDKLEKRFKVGKKVRARVIGSRAMDSVATVSCKSTVLDQPFLSLEELVPGMQVRGEVVAV 502

Query: 376  DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKK 433
            + +GA+V+   GVKALCP  H+S+        K K G    FRV+ V     R  VTHKK
Sbjct: 503  EPYGAVVKLAPGVKALCPPNHISDIPGRVTNAKVKEGLSAKFRVVSVDRVKGRAVVTHKK 562

Query: 434  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 493
             L++S+L +++S  +AT    THG +T +E +G FV+ Y  ++G A   +LGL     P 
Sbjct: 563  QLIRSELPVVASLDDATPGTTTHGVVTGVEPYGVFVQLYGNLRGLAGLQDLGLAADQTPQ 622

Query: 494  SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL------------VKLGSLVSG 541
              + VGQVV+  ++ S    ++I LS        + +DL             + G++V  
Sbjct: 623  EAFAVGQVVRATVIRSDRGEQKIKLSLAPGGAVANGNDLDGTPGEKGDVGAPEPGTVVES 682

Query: 542  V----VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 597
                 VD  T N   V V   G   G +    ++DH      +     PG E   L+ L+
Sbjct: 683  ATVKRVDEATGN---VQVTLPGGVPGVVTAAQMSDHPLTGAGLSQAFAPGDEIGPLVALE 739

Query: 598  NESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCN-IIETGCFVRFLGRLTGF 654
             +    +LS K SL+ +A+   LP D S +   ++  GYV +     G FVRFLGRLTG 
Sbjct: 740  AKPRRSILSRKASLVEAARGGTLPEDISGVVVGAIYPGYVASATANAGVFVRFLGRLTGL 799

Query: 655  APRSKAVDGQRA---DLSKTYYVGQSVRSNILDVNS--ETGRITLSL-----KQSCCSST 704
            AP S+  D   A   D  + + +GQ+V + ++ V++  E  R++LSL       S   + 
Sbjct: 800  APPSQLTDVPVAGGVDPEEMFALGQTVLARVVSVDATVEPPRLSLSLAPRGVAASSGVTA 859

Query: 705  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI---------IGSVIEGKVHESNDFG 755
            +A  ++  F  +  +A   + +   S  +  EGF+         +G  I+G VH   ++G
Sbjct: 860  EAPLIRSIF-TDVDVADRLADERAASGGEAPEGFLTAAANEKLKVGEEIKGVVHAVREYG 918

Query: 756  VVVSFEE-HSDVYGFITHHQLAGATVES--------GSVIQAAILDVAKAERLVDLSLKT 806
            V+V   +   D  G +  HQL  A  ++        G  I   +LDV++ E +VD+  + 
Sbjct: 919  VLVDMPDVDPDAVGLVAFHQLPNANGDNEEPKHPAEGEKITGRVLDVSRREGVVDIGARP 978

Query: 807  VFID-----RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 861
                     +  +A +  + +K+K  +  +  L +   V A VE+VK  Y VLSLP++  
Sbjct: 979  SLTGAKVGKKGAKALTTAELKKRKAAQAGAHKLEIGSKVTAEVELVKPEYAVLSLPDHGG 1038

Query: 862  SIGYASVS----DYNTQKFPQKQFLNGQSVIATVMALPSSSTAG-RLLLLLKAISETETS 916
            +I YASV+     +N  +   ++F  G+ V A V    +S + G RLLL + A    + +
Sbjct: 1039 AIAYASVNLLNRRFNEDEVETERFAVGRKVTAFVAGNAASGSPGDRLLLTVPAAKSNKGA 1098

Query: 917  SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 976
             S  A   S+   G  ++  + E++ ++  L    G  GR+H TE       + E  F  
Sbjct: 1099 GSGEA---SAVGAGLAMEGVVKEVQSMQAILTLPNGRKGRLHATE-------LAEGAFPM 1148

Query: 977  FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE------------ 1024
             KI    T  ++  +  P   +  + EL+++ S+    EI                    
Sbjct: 1149 KKIAVGATLNVV--TLGPAGDRGNMLELTVRRSVEESREIARAATDAGGGDGSGAGIAGT 1206

Query: 1025 ---CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGK 1080
                 +S G  + G V  V  +   + ++  L A++  +++    + L++    RF +G+
Sbjct: 1207 AALATLSEGDEIDGIVSAVSADTLAIAVAPGLTARVPKIETGDSIAALRKALTSRFTVGE 1266

Query: 1081 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1140
             V    L+ +  +K + + LR         + D  N      + EG  + G +SKI  G 
Sbjct: 1267 RVKMTALAADVARKKIIVTLR---------SADKRN------VVEGAKIAGIVSKIAPGG 1311

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            GG+ VQ+    +GRVH T++ +    DP S       +P   +  G+ V+ +VL +    
Sbjct: 1312 GGVFVQLNSRQHGRVHVTDIAD----DPRS-------EPWKLHSVGEAVEVRVLGVGE-- 1358

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                 V+LS++SS   + S  SS+           +  +  L+P   V G+VK V   GC
Sbjct: 1359 --GGEVDLSMKSS--ALKSKGSSN----------GISSVSQLAPGAHVSGFVKQVNKGGC 1404

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD-SR 1319
            F+ +SR +DA+V + NL+D +V  P +EFP GKLV G +LSV+  S R E+TL++     
Sbjct: 1405 FVAISRSVDARVKMCNLADTFVSDPAQEFPKGKLVKGTILSVDESSGRAEMTLRSDGMDA 1464

Query: 1320 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-DNIET 1378
             A +S+I+N +++  G + +G ++RV++YG+F+T++ +   GLCH+S  ++  + D++E 
Sbjct: 1465 AAGRSQIDNNAHVEEGSVQMGTVRRVQTYGVFVTLDGSGRSGLCHISMFADARIKDSLEQ 1524

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
              RAGE+V+VK+L+VD+E  +ISLGMK S F +D
Sbjct: 1525 HVRAGERVRVKVLQVDEETGKISLGMKPSLFADD 1558


>gi|412992671|emb|CCO18651.1| predicted protein [Bathycoccus prasinos]
          Length = 2077

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 464/1576 (29%), Positives = 785/1576 (49%), Gaps = 222/1576 (14%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------------ 48
            +KL G+V+ V+ K L++ L  GL+G    ++A D         N+D +            
Sbjct: 145  VKLLGIVSHVSNKGLIVSLQNGLKGTVSKSEASDAFYIT----NKDRVKRKSKKKPSSYS 200

Query: 49   ---------------------------------LPTIFHVGQLVSCIVLQLDDDKKEIGK 75
                                             L ++FHVGQ+V C V+ LD+ K   G 
Sbjct: 201  SSEEEFSSSSSSSEESSGEEEEEEDGGKKAKIGLESLFHVGQIVRCAVVNLDEGK--TGG 258

Query: 76   RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 135
            ++I L+LRLS +  GL  E + EG  + A V S+EDHGYI+ FG+   TGFL R++  + 
Sbjct: 259  KRIELTLRLSQVCAGLDKECLTEGAAIPAVVTSVEDHGYIVEFGIDGSTGFLSRDSAGDE 318

Query: 136  SGIDVKPGLLLQGVV------------------RSIDRTRKVVY-LSSDPDTVSKCVTKD 176
                +  G L++ V+                  R        VY +S+D    S  +  +
Sbjct: 319  HD-SLLTGQLIEVVIALTPKAKKDINNNKKKNGRGSKLGESNVYKVSADTKRCSSAIALE 377

Query: 177  LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 236
             K   I  ++PGM+V  RV+S+LE+G+ +SF+TYF+GT+D FH+     T+     + + 
Sbjct: 378  NKSTLISTILPGMLVKARVKSVLEDGISVSFMTYFSGTIDCFHIAAEDTTS-----FKEG 432

Query: 237  KKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDI 295
            +K+ +R++FVD  ++ VGL+L P+LL  R+P S +   G I++ + + RVD  +G+ L I
Sbjct: 433  QKLRSRVIFVDAQNKRVGLSLQPHLLEARSPASILPSTGSIFENAMINRVDPNVGVSLQI 492

Query: 296  P--STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 353
                   S   Y  +S ++++ V K+EKKYK G  V+VR++G R L+ +A   LK S  E
Sbjct: 493  SQGGKTRSVAGYAHVSHLSDDHVEKIEKKYKVGKQVKVRVIGHRLLDAVANVSLKRSVLE 552

Query: 354  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 413
               F+  ++ PGM+VKG+V+A + FGAIV+   GVKALCP  H+S+        K   GA
Sbjct: 553  QPFFSLEELVPGMIVKGEVLATEHFGAIVKLAEGVKALCPPIHVSDIVGRTTSSKVTPGA 612

Query: 414  ELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 471
             L FRV+ V     R  VTHK+ L+KS+L +L +  +A     THG I+ +  +G FV  
Sbjct: 613  ILKFRVISVDRSRHRAIVTHKRALIKSELPVLKTIEDAIPGRTTHGIISGVVDYGVFVTL 672

Query: 472  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 531
            Y  ++G A   +LGL  G   +  Y VGQV++  I+S+     ++ LS        +EDD
Sbjct: 673  YGNLKGLAGSQDLGLAEGQSIADAYAVGQVIRTTIVSADRGENKLRLSLGG--GGGNEDD 730

Query: 532  LVKLGS--------------------------LVSGVVDVVTPNAVVVYVIA---KGYSK 562
                G+                            S  +  +   + ++ V +   +G  +
Sbjct: 731  NAAEGAEATVGAAAAAAAAISLSTDAVPIGKVFASATITKIVQGSSIIEVTSSTEEGSFQ 790

Query: 563  GTIPTEHLADHLEHATVMKSVIKPGYEF-DQLLVLDNESSNLLLSAKYSLIN--SAQQLP 619
            G +  +HL+D+   A  M S +K G       +V++ +   +++S K S+I   ++  LP
Sbjct: 791  GLVAFQHLSDNPVTALSMASTLKVGEVLPGAFVVIERKPKRVVMSRKLSIIEAVTSSSLP 850

Query: 620  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
              A  +    +  GYV +   TG FVRFLG LTG AP S+  DG  A  + +++VGQ+V+
Sbjct: 851  DRADKVKAGKIYPGYVASTSSTGVFVRFLGSLTGLAPPSQIPDGCNA--TDSFFVGQTVQ 908

Query: 680  SNILDVNSET--GRITLSLKQSCCSS--TDASFMQEHF----LLEEKIAMLQSSKHNGSE 731
            + +L V+ E    R++LSL+    +   +DA  ++  F     L+ K+A           
Sbjct: 909  AMVLSVDVECVPPRLSLSLRLQTTAQPLSDAPLIRSFFADLEFLDFKVAQDPKEAETLLS 968

Query: 732  LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-----SGSVI 786
             K V  F  G  IEG ++E+ D+GV++  +E  +  G ++ HQ+   +VE       + +
Sbjct: 969  EKTVRMFEPGCDIEGSINETKDYGVLIDIDEDENAVGLVSPHQVP-ESVEIEEFTPETRL 1027

Query: 787  QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEI 846
               +LDV++ E ++D+   +V  ++       ++ +       A K L V +   AIVE+
Sbjct: 1028 SGRVLDVSRREGVIDIGKVSVVTEKNLSKKKKKKVKSAS---AALKKLKVGEATEAIVEL 1084

Query: 847  VKENYLVLSLPEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSST------ 899
            +K  Y++LSLP+Y+ +IGYA V   N +     ++F   Q V   +  +PS+S+      
Sbjct: 1085 IKAQYVILSLPKYSDAIGYAPVHYCNVRLNDASERFEVNQRVNVVIAQVPSASSPDDVKG 1144

Query: 900  ----AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 955
                + RLLL +  +   +++S  +        VG+  Q  ++E++PL+  +       G
Sbjct: 1145 DEFYSNRLLLTVPYVDTNKSNSGPK--------VGTKFQGVVSELQPLQALVSLPNSKKG 1196

Query: 956  RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE 1015
            RIHITE      +          +G TV   ++  +      +  L +L+++ S     +
Sbjct: 1197 RIHITETGAFAKSKFP--LEELSLGLTVNVAVLGMAG----DRGGLLDLTLRSSADEDKD 1250

Query: 1016 -----IGSKLLFEECDVS------------IGQRVTGYVYKVDNEWALLTISRHLKAQLF 1058
                   +K   ++ D +            +GQ +  YV  V  +   + I   + A + 
Sbjct: 1251 DENVNKNAKNGNDDFDATASLKRPTLQTLEVGQSIHAYVISVLPDGVKVCIRPEITAFVP 1310

Query: 1059 ILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            ++++A    EL++  ++RF  G+ +   ++++N                +S K VD+S  
Sbjct: 1311 LIETASSIKELKKPLEKRFSKGEKIKATIVNVN----------------VSKKHVDVSFR 1354

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
            + Q  +  G  V G IS+   G   ++V++G H+ GRV  T++            DE Q 
Sbjct: 1355 D-QNSVSVGAKVFGIISRFNKGT-SMMVRLGAHVTGRVFLTDVS-----------DEFQE 1401

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
             P S       V   V     +++ +  V+LS+R SL   S     +++       K+LE
Sbjct: 1402 KPFSEMK----VGNVVEVRVVSMKSSGEVDLSMRPSLLSKSGEKKKNVANPEINDAKNLE 1457

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
              +++S      GYVK+V   GCF+ LSR +DA + L+NL+DG+V  P  EFP G+L+ G
Sbjct: 1458 VGKEVS------GYVKSVGKSGCFVALSRNVDALIKLTNLADGFVVKPSVEFPTGRLIRG 1511

Query: 1298 RVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
            R+LS +  + RVE++L+   SDS+T ++  +   ++L VGD+V+G ++ V+SYG+F+T++
Sbjct: 1512 RILSADAKTNRVEMSLRASQSDSKTPNKEAV---ASLKVGDVVMGTVRSVQSYGVFVTLD 1568

Query: 1356 NTNLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
             + + GLCH+S  ++ HV D++    RAGE+V+ KI+KVD E  ++SLG+K+S F +D D
Sbjct: 1569 ESGISGLCHISMFADMHVKDDLANHVRAGERVRAKIMKVDYETSKVSLGIKASVFGDDDD 1628

Query: 1415 NLQMSSEEESDEAIEE 1430
            ++   ++ E D   E+
Sbjct: 1629 DIDNGAQREGDSEDED 1644



 Score =  313 bits (803), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 155/330 (46%), Positives = 227/330 (68%), Gaps = 8/330 (2%)

Query: 1479 DDEQPDMDNGISQNQGHTDEAKTIDEKNN-----RHAKKKEKEEREQEIRAAEERLL-EK 1532
            D+E+ +    ++  +   +E+  ++E  N     + AK+++  E E EI   E++L  E 
Sbjct: 1742 DEEEKEQKQKLNAMKRSREESTHLEEGENANKLSKRAKRRKAREVEMEILRQEQQLRDEG 1801

Query: 1533 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1592
              P +  E+E+L+ +SP SSF+WI+Y+AF +S+   E AR++AERAL+ I  +EE+E++N
Sbjct: 1802 RLPESASEYEKLILASPLSSFLWIQYVAFQVSVGAYEDARAVAERALEAIPAQEEDERMN 1861

Query: 1593 IWVAYFNLENEYGNP-PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1651
            IW+AY NLEN +G P P+EAV ++F+RA+   DPKK++L L+ +Y R EQ ++ +E L  
Sbjct: 1862 IWIAYLNLENSHGLPNPKEAVSRLFKRAVNLADPKKLYLVLVDMYTRAEQIEILEETLKL 1921

Query: 1652 MIKKFKHSCKVWLRRVQRL-LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710
            ++KKF+ SCKVWL  ++ + LK   EG + ++ RA  SLP+ KHIK + + A+LE K G 
Sbjct: 1922 IVKKFRSSCKVWLTYIRHVTLKGDAEGSRKLLDRATTSLPKRKHIKLLVKVALLEMKEGD 1981

Query: 1711 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1770
             +RGR+MFEGIL  YPKRTD+WS+Y+DQEI+    + IR LFERA  L L  + MKFLFK
Sbjct: 1982 PERGRTMFEGILRNYPKRTDIWSVYIDQEIKQNIPERIRALFERATHLELNARSMKFLFK 2041

Query: 1771 KYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
            +YLEYE+S G  ER+ YVK +AMEYVE TL
Sbjct: 2042 RYLEYERSHGNTERMTYVKARAMEYVERTL 2071


>gi|325180379|emb|CCA14782.1| rRNA biogenesis protein rrp5 putative [Albugo laibachii Nc14]
          Length = 1939

 Score =  598 bits (1541), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 554/1938 (28%), Positives = 922/1938 (47%), Gaps = 250/1938 (12%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL------------DNEIEANEDNL 48
            M L G++ ++ E  L+I LP  L G     +  D               ++ I+A++   
Sbjct: 112  MLLLGLIRDITETGLLISLPSKLNGFVPMEECSDEFYHHLHASSSSSGPNSTIKASKLAP 171

Query: 49   LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
            L  IF + Q V C+VL    D K  GK  + LS+RLSLL+   +   V++ M +   ++S
Sbjct: 172  LNAIFSINQYVPCMVLNKSKDDK--GKHLV-LSMRLSLLHAEYTPNCVKKSMTMYGTIQS 228

Query: 109  IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-----VVRSIDRTRKVVYLS 163
            +ED G +++ G+     F P++ L      D +   +L G      V +++     V LS
Sbjct: 229  MEDQGAVINLGIRGMHAFAPKSQLLAACPEDPECASMLMGRQFLFTVLNVNPHTSTVTLS 288

Query: 164  SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD------- 216
               +   K VT+    +++  L+PG++++ RV+ ++ NG+ ++FLT+F GTVD       
Sbjct: 289  PARNHTIKAVTRG-DHLTVKHLLPGLLLNVRVEQVVSNGLFVNFLTFFHGTVDYNHVSRL 347

Query: 217  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP--PSHVKVG 274
            IFH   T     W   + +  K  ARI+ VD   + + L++ P+++H   P     + VG
Sbjct: 348  IFH-DETEDMKTWTLMFKKGIKSRARIIGVDRAEKKIMLSMAPHIVHLDHPFDAHSMPVG 406

Query: 275  DIYDQSKVVRVDRGLGLLLDIP---STPVST---PAYVTISDVAEEEVRK-LEKKYKEGS 327
               D + + R+D G+G+LL +P    TP      PAYV IS+V++  V K L+KKY  G 
Sbjct: 407  SSIDSATIERIDPGIGMLLSLPLFEETPSKNSKLPAYVHISNVSDAHVDKHLDKKYTIGD 466

Query: 328  CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 387
             +R R++G    + + T   K S+    V  H D+ PG  V  K++ +  +G +++   G
Sbjct: 467  KMRCRVIGSASFDNIVTVSCKESSLSQTVLRHCDLAPGQHVNAKILVMKEWGVLLEISEG 526

Query: 388  VKALCPLPHMSEFEIVKPGK------KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 439
            V+ L  + H+      K  K      KF+ G  +  +VL V   +K+  +T K+ L++S+
Sbjct: 527  VRGLVTMQHVPSIIASKLTKSKDAIGKFQQGRMVDAQVLHVDTAAKKTFLTMKRALMESQ 586

Query: 440  LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHV 498
              IL+SY +A + L+T G+ITKI   G  V FY GV G  P S L    G E     Y +
Sbjct: 587  FPILASY-KAENGLVTMGYITKIAPFGVIVSFYGGVHGLVPASTLH-QAGIECFEDAYTL 644

Query: 499  GQVVKCRIMSSIPASRRINLSF--MMKPTRV-SEDDLVKLGSLVSGVV--DVVTPNAVVV 553
            GQVV+ RI       +R+ LS      PT V S+D L+  GS++  VV  D+     VV 
Sbjct: 645  GQVVRARITYCDTEKQRLLLSLNTTSTPTEVDSKDSLI--GSILCDVVVTDIDMEEHVVR 702

Query: 554  YVIAKGYSKGTIPTEHLADHLEH--------ATVMKSVIKPGYEFDQLLVLDNESSNLL- 604
                 G   G +   HL D   H        A++ K  I  G EF   LVL   +  +L 
Sbjct: 703  VKTPLGLI-GNVSFVHLTDFPRHSFLIDLILASIRKDEIWAGQEF---LVLSQSTDRVLE 758

Query: 605  LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRSKAVDG 663
            LS K  L     ++P     +   S + G+V  I  E G FV FL  LTGFA +S  VD 
Sbjct: 759  LSRKPMLTRHISKIPQSIDSVSEKSKLFGFVAAIEPEKGVFVEFLNHLTGFAHKS-LVDE 817

Query: 664  QRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 721
            +   +  S  + VG++V  ++L+   + G+ T+             F   HF LE   + 
Sbjct: 818  KFVQVISSDAFQVGETVVCSVLN-KLQGGKFTVD------------FRARHFTLEHFPSY 864

Query: 722  L-QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 780
              + S+   +E    +GF +G  + G+      +G V S E+ SD    +    L    +
Sbjct: 865  FAEWSRQVYTETNAYQGFPVGLAVNGEFVAKRSYGSVFSIED-SDFQASV----LVRDGI 919

Query: 781  ESGSVIQAAILDVAKAERLVDLSL-KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 839
            E  S     ++       LVD  + K V+     E  + R    K+R R   + L + Q 
Sbjct: 920  EMDSTSSQKLV-------LVDFDVEKKVYFGILDEKLA-RSCTLKRRSR--WERLAIDQN 969

Query: 840  VNAIVEIVK--ENYLVLSLPEYNHS-IGYASVSDY--NTQKFPQKQFLNGQSVIATVMAL 894
            ++A V  +   E Y V++L     S IG   +SD+     K  ++       V+AT +  
Sbjct: 970  LDARVLAIGTLEQYAVVALNVGKRSQIGVVQLSDFWRPLSKCIEEDTRIKCRVVATCLRD 1029

Query: 895  PSSS----TAGRLLLLLKAISETE------------TSSSKRAKKKSSYDVGSLVQAEIT 938
               S    T    L LL+   + E             S  +       + VG LV   I 
Sbjct: 1030 TRDSDVIPTPFEELPLLRVCDDHEHRQKPARLLRDAVSMPRYKHPAEEFQVGKLVTGRIA 1089

Query: 939  EIKP--LELRLKFGIGFHGRI----HITEVNDDKSNVVENLFSNFKIGQTVTARII---- 988
             IK   +E++LK      G++     I +V+ D++    +    +     VT RI+    
Sbjct: 1090 TIKQDGMEIKLK-ATKQCGKVVAMVSIIDVDADENET--HPLDQYAPKMAVTGRILTIMQ 1146

Query: 989  --AKSNKPDMKKS----FLWELSIKPSMLTVSEI------------GSKLLFEECDVSIG 1030
              A   KP  + +     + +LS++   ++  E+            GSKLL      ++G
Sbjct: 1147 KGANQRKPVSESNPATFHILQLSLRQQDISSDEMEHLRADWGLENKGSKLL------TVG 1200

Query: 1031 QRVTGYVYKVDNEWALLT-ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG-HVLS 1088
              + G V +    W LL  +S  +   L  ++ + E S L+ F   + +GK V G H++S
Sbjct: 1201 NVLEGVVVE-QKAWGLLIRLSHRVVGFLHCMEISTELSVLERFHELYPVGKRVNGCHIVS 1259

Query: 1089 INKEKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1147
            ++  ++ + L ++   ++GI++        N+Q       +V     K       L++Q+
Sbjct: 1260 VDHAERRVDLSLIHESKEGITE--------NLQVGNKVIGVVLDSSKKAPFRPPSLMLQL 1311

Query: 1148 GPHLYGRVHFTELKNIC--VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
              + +GRV  TEL++     S  L    E QF P      G+F+   +L   + V     
Sbjct: 1312 SAYTFGRVCVTELRSPTNWTSQMLQ---ESQFKP------GKFLVGTLLSAQKDVW---- 1358

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
             E++LRS        +  D S      G             +V G + + +S GCF+ ++
Sbjct: 1359 -EVTLRS--------DRQDESYSTYEIGN------------LVTGIIASTSSMGCFVRIN 1397

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              L  +VLL +LSD ++  P  EFP+GK+VAGR+ + +     V  ++    S  +    
Sbjct: 1398 HLLTIRVLLRDLSDNFINDPISEFPVGKVVAGRITAKQVTQDAVLYSMSLKPSIVSDGIA 1457

Query: 1326 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-IETIYRAGE 1384
               ++NL  G IV G++ +++SYG+F+ +  +NL GLCH+SE+ E+ +   +  +++ G+
Sbjct: 1458 SLTMTNLKEGMIVTGKVSKIQSYGVFVRLNQSNLSGLCHISEIGEERIQKPLTELFKEGD 1517

Query: 1385 KVKVKILKVDKEKRRISLGMKSSYFKNDAD--NLQMSSEEESDEAIEEV-GSYNRSSLLE 1441
             VK K+LKV  E  RISLG K +YF +D +  N++   ++ SD+ ++         +  E
Sbjct: 1518 SVKAKVLKV--ENGRISLGFKLAYFDDDIESANIETIDQQRSDDEVQRPEADETSEAQSE 1575

Query: 1442 NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKT 1501
            + S +V  ++ ++    S+     E    VP +    D+ +       S+ +      K+
Sbjct: 1576 SESESVNAVEADNTQAVSME-VDTEEEEDVPAVGFQWDEFEA------SKEESPKAVVKS 1628

Query: 1502 IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAF 1561
            +  +N     +     RE+E+  +E+       P+   +FERL+   P  +++WI+YMAF
Sbjct: 1629 VCGRNPLWMDEGSVAIREKELALSEQE------PQCAQDFERLLTIHPQDAYLWIRYMAF 1682

Query: 1562 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1621
             +S+ +V+ AR +A RA + I  R+E EKLN+W+AY NLE+++G+   E+  +V   A+Q
Sbjct: 1683 HISLQEVQLARDVAMRATRMIAFRDEKEKLNVWIAYLNLEHDFGDA--ESFQRVLHSAIQ 1740

Query: 1622 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA- 1680
               PK ++L L+ LY R+ Q+    E+L  M KKFK S  VW+R ++  + +  + V+A 
Sbjct: 1741 VNPPKSIYLHLVDLYVRSNQHANVLEVLSTMQKKFKTSRAVWIRALRYFVLENSDHVKAA 1800

Query: 1681 -VVQRALLSLPRHKHIKFISQTAILEF---------KNGVADRGRSMFEGILSEYPKRTD 1730
             V+  AL  LP  KH+  + +  +  +         +N + ++ R++ EG+L+ YPKR D
Sbjct: 1801 HVISSALKYLPGVKHVDILVKYGLFLYDPRAGKDKSRNAI-EKARTVLEGVLATYPKRMD 1859

Query: 1731 LWSIYLDQEIRLG--------DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1782
            LW++Y D+EIRL         D D IR LFER +++    KKMKF FKKY+ +E++ G++
Sbjct: 1860 LWNVYADKEIRLCKDTNCTDEDRDRIRQLFERLLAMKFSTKKMKFWFKKYISFEQTFGDQ 1919

Query: 1783 ERIEYVKQKAMEYVESTL 1800
              +E+VKQ A  YVE  +
Sbjct: 1920 AHVEHVKQLAKSYVEHAM 1937


>gi|326527133|dbj|BAK04508.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 450

 Score =  555 bits (1430), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/471 (59%), Positives = 355/471 (75%), Gaps = 31/471 (6%)

Query: 1340 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1399
            GQ+KRVESYGLF+TI+++ LVGLCH+SELS++ V +I   YRAG+ VK KILK+D+++ R
Sbjct: 2    GQVKRVESYGLFVTIKSSELVGLCHISELSDEPVLDINACYRAGDMVKAKILKIDQDRHR 61

Query: 1400 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEV-------GSYNRSSLLENSSVAVQDMDM 1452
            +SLG+K SYF +D  + +  +E + +    ++       G +N +S L            
Sbjct: 62   VSLGLKESYFDSDMTDDENDNENDGERVPMDISRAPQISGGFNSTSFLPGP--------- 112

Query: 1453 ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKK 1512
                         E RAS+P L+V LD+ +     G  +     + +++  +K++R  K+
Sbjct: 113  -------------EPRASIPALQVTLDEYEGSDQEGDQKGHEIANGSESNVKKSDRRLKE 159

Query: 1513 KEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1572
            K +++RE EI A EER L+KD P+TPDEFE+LVRSSPNSSFVWIKYMAF+L +ADVEKAR
Sbjct: 160  KARKQREIEISALEERALQKDTPQTPDEFEKLVRSSPNSSFVWIKYMAFLLDLADVEKAR 219

Query: 1573 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1632
            S+AERAL+TINIREE EKLN+WVAYFNLENEYG+P E+AV K+FQRALQYCDPKKVHLAL
Sbjct: 220  SVAERALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLAL 279

Query: 1633 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLP 1690
            LG+YERT+QN+LADEL  +M K+FK SCKVWLRR+Q  L Q +  E +++VV RALLSLP
Sbjct: 280  LGMYERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLP 339

Query: 1691 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1750
            + K IKF++QTAILEFK GVA+ GRS FE IL EYPKRTD+WS+YLDQEIRLGD ++IR 
Sbjct: 340  QSKRIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRA 399

Query: 1751 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            LF+R   LSLPPKKMKFLFKKYL YEK+ G+EERIE+VKQKAMEYVE + A
Sbjct: 400  LFDRVTCLSLPPKKMKFLFKKYLRYEKAQGDEERIEHVKQKAMEYVEISRA 450


>gi|397510731|ref|XP_003825744.1| PREDICTED: protein RRP5 homolog [Pan paniscus]
          Length = 1803

 Score =  544 bits (1402), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 443/1554 (28%), Positives = 753/1554 (48%), Gaps = 177/1554 (11%)

Query: 323  YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 382
            +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G +V
Sbjct: 342  FKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLV 401

Query: 383  QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 440
            +    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL
Sbjct: 402  KVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKL 461

Query: 441  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
             +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQ
Sbjct: 462  PVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQ 521

Query: 501  VVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNA 550
            VVK  +++  P+  R+ LSF +        +P   S+     +  G LV   V   T + 
Sbjct: 522  VVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINTGQLVDVKVLEKTKDG 581

Query: 551  VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 610
            + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  K +
Sbjct: 582  LEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPA 640

Query: 611  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
            L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D      
Sbjct: 641  LVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTST 700

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS---- 724
            S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ     
Sbjct: 701  SDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSL 759

Query: 725  -SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVES 782
             S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  VES
Sbjct: 760  MSNRDSVLIQTLAEMTPGMFLDLVVREVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVES 819

Query: 783  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 842
            G   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ   A
Sbjct: 820  GQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ---A 861

Query: 843  IVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAG 901
            +V+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T  
Sbjct: 862  VVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG- 920

Query: 902  RLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEIKP 942
             LLL ++  +   T    R                     KK +  +G +V   +  IKP
Sbjct: 921  -LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKP 979

Query: 943  LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1002
              + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F +
Sbjct: 980  THVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKY 1034

Query: 1003 -------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDN 1042
                         ELS++PS L    T     S    E+      GQ VT ++  Y V  
Sbjct: 1035 LPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVK 1094

Query: 1043 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1102
            +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L  
Sbjct: 1095 KWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTG 1154

Query: 1103 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1162
                                + EG++  GR+ K+    G         L     F ++  
Sbjct: 1155 THK-----------------LEEGEVAMGRVVKVTPNEG---------LTVSFPFGKIGT 1188

Query: 1163 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1222
            + +      Y E    PL  +   + V+C +L  +  V     + LSLR      SS  +
Sbjct: 1189 VSIFHMSDSYSE---TPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTN 1234

Query: 1223 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1282
             +  + V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S    
Sbjct: 1235 PETKSKVEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQ 1289

Query: 1283 ESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1336
             SP K+       P GKL+  RVL +      VE++    D+      + + LS    G 
Sbjct: 1290 HSPSKKTLYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQ 1344

Query: 1337 IVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKV 1386
            +   + ++ E+       E  N       ++  ++ V+            +   R G++ 
Sbjct: 1345 LTKQEERKTEAEERDQKGEKKNQKRNEKKNQKGQEEVEMPSKEEQQPQKPQAQKRGGQEC 1404

Query: 1387 KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA 1446
            +    +   E+ R+S   K +    + D+L      E  E  EE     +    E  +  
Sbjct: 1405 R----ESGSEQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKP 1456

Query: 1447 VQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKN 1506
             +   ++   G +  +       ++PPL  + D E+ +  +  +Q             K 
Sbjct: 1457 AEAPRLQLSSGFAWNVGLDSLTPALPPLAESSDSEEDEKPHQATQI------------KK 1504

Query: 1507 NRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1565
            ++  ++ EK++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L  
Sbjct: 1505 SKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQA 1564

Query: 1566 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1625
             ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P
Sbjct: 1565 TEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEP 1622

Query: 1626 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQR 1684
             KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QR
Sbjct: 1623 LKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQR 1682

Query: 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
            AL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G 
Sbjct: 1683 ALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGS 1742

Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
               +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1743 QKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1796



 Score =  150 bits (378), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 131/452 (28%), Positives = 197/452 (43%), Gaps = 55/452 (12%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
           M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84  MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
             G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144 SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114 YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
           Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202 YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
           VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262 VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229 WKNDY-------------------NQHKKVNARILFVDPTSRAVGLTLNP------YLLH 263
           + N                     N HK    RI+          L+L        YL +
Sbjct: 322 FSNQALSHLSDSKNVFNPEAFKPGNTHK---CRIIDYSQMDELALLSLRTSIIEAQYLRY 378

Query: 264 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 323
           +   P  V  G        V   +  G+L+ +          + ++D+    ++  EKKY
Sbjct: 379 HDIEPGAVVKG-------TVLTIKSYGMLVKVGEQMRGLVPPMHLADIL---MKNPEKKY 428

Query: 324 KEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGA 380
             G  V+ R+L            LK +  E    ++  ++D KPG+   G +I V  +G 
Sbjct: 429 HIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGC 488

Query: 381 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 412
           IV+F   V+ L P   +S   I  P + F  G
Sbjct: 489 IVKFYNNVQGLVPKHELSTEYIPDPERVFYTG 520



 Score = 45.1 bits (105), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 125/309 (40%), Gaps = 47/309 (15%)

Query: 245 FVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 304
             D   ++V L+LNP  ++       +K G +   +     D G   L+DI      T A
Sbjct: 158 ITDRGKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHGY--LVDIGVD--GTRA 213

Query: 305 YVTISDVAEEEVRKLEK--KYKEG---SCVRVRILGFRHLEGLATG---ILKASAFEGLV 356
           ++ +   A+E +R+  K  K K G   +C+  ++ G   +  L+ G   +  A A E   
Sbjct: 214 FLPLLK-AQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQS 272

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQF-----------------PGGVKALCPLPHMSE 399
           +  +++ PG+VVK +V  V  FG  + F                  G   +   L H+S+
Sbjct: 273 WNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTYFSNQALSHLSD 332

Query: 400 FEIVKPGKKFKVGAELVFRV--------LGVKSKRITVTHKKTLVKSKLAILSSYAEATD 451
            + V   + FK G     R+        L + S R ++   + L          Y +   
Sbjct: 333 SKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYL---------RYHDIEP 383

Query: 452 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 511
             +  G +  I+ +G  V+    ++G  P   L       P   YH+G  VKCR++   P
Sbjct: 384 GAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDP 443

Query: 512 ASRRINLSF 520
            ++++ ++ 
Sbjct: 444 EAKKLMMTL 452


>gi|302845196|ref|XP_002954137.1| rRNA processing protein Rrp5/programmed cell death protein 11 [Volvox
            carteri f. nagariensis]
 gi|300260636|gb|EFJ44854.1| rRNA processing protein Rrp5/programmed cell death protein 11 [Volvox
            carteri f. nagariensis]
          Length = 2192

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 444/1574 (28%), Positives = 752/1574 (47%), Gaps = 229/1574 (14%)

Query: 2    KLWGVVAEVNEKDLVICLPGGLRGLA---RAADALDPILDNE------------------ 40
            ++WG+V EV  + LV+ L  GLRG     +A+D L  +L  +                  
Sbjct: 128  RVWGMVLEVTPRGLVVSLAHGLRGYVAPNQASDVLALMLKAQKTAAAAAAGDRGDVARKK 187

Query: 41   ----IEANEDNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRK---IWLSLRLSLLYKGL 91
                +EA    + P   +F VGQ V  +V++    +   G R    + LSL L  +  GL
Sbjct: 188  GAALLEAAGGVVPPLTDLFVVGQFVRGVVMEAPTGEDTGGGRSAKHVALSLLLRDVQGGL 247

Query: 92   SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--NSGIDVKPGLLLQGV 149
              E V EG+ L A V+S+EDHGY L FG+   +GFL + +       G+ ++ G L+  V
Sbjct: 248  GSEAVAEGLALGAVVRSVEDHGYTLSFGIKGTSGFLRKKDHEAQFGEGVALQVGGLIDVV 307

Query: 150  VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFL 208
            VR+    R V+ +S  P  V+  VT++ +G+S +  ++PG +++ +V+ +L NG+++SFL
Sbjct: 308  VRNAADKRNVL-VSCAPGDVAAAVTREAEGMSGLGAVLPGALLNVKVRKVLSNGLLVSFL 366

Query: 209  TYFTGTVDIFHLQNTFPTT------------NWKNDYNQHKKVNARILFVDPTSRAVGLT 256
            T+F GTVD++HL                   +W+  Y +  K+ AR+L+ D   +  GL+
Sbjct: 367  TFFHGTVDLYHLPAASAAAAAAATGGAAGSKDWRKLYPEGTKLRARLLYADLVRKRAGLS 426

Query: 257  LNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR--GLGLLL---DIPSTPVSTPAYVTISD- 310
            L P+L     P     +G ++ +++VVR+D   G GLLL    +P  PV+   Y  +S+ 
Sbjct: 427  LLPHLAAQTLPSPVPVLGSVFPEAEVVRLDAAGGPGLLLRMEGLPEGPVA--GYCHVSNA 484

Query: 311  -----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 365
                 VA+E V  + +KYK G+ +  R++G+R L+G+A+  ++ S     V + +D+ PG
Sbjct: 485  LEEKKVAKEAVAAMAEKYKVGTKLPARVIGYRLLDGMASVTVRPSQVNAAVLSFTDLTPG 544

Query: 366  MVVKGKVIAV---DSFGA-IVQFPGGVKALCPLPHMSEF---EIVKPGK--------KFK 410
            M+V G VI+V   D  G  +VQ   GVK L P  H SE         GK        K K
Sbjct: 545  MLVAGTVISVPDRDGDGPLLVQIAEGVKGLVPPLHASELTGAAAAAAGKTSGGKRRIKVK 604

Query: 411  VGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI-EKHGC 467
            VG  +  RVL +   ++++T+T +K  + +K A L S A+A      HG +T + ++ G 
Sbjct: 605  VGDRVEARVLDLDLGARKVTLTLRKAFLATKAAPLVSAAQAVPGSRFHGMVTGLHDRLGV 664

Query: 468  FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI----------- 516
            FV F++G+ G A   +LGL+PG +    + +GQVV+  I+S+  A  RI           
Sbjct: 665  FVSFFSGLSGLASHDDLGLEPGQDVKEAFGIGQVVRATILST--AGGRIKLSLASKSAAA 722

Query: 517  --------------NLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGY 560
                          +L   ++P  ++E  ++K+  G          TP            
Sbjct: 723  EAAAAAASNGISTPDLLGGLQPGDIAEAVVLKVHNGGEGGDAASSATPFYTCRLERPGVS 782

Query: 561  SKGTIP--------TEHLADHLEHATVMKSVIKPGYEFDQLLVLDN-ESSNLL-LSAKYS 610
              G++P          HL+DH       ++V++PG +  +++VL+  E++  + +S K S
Sbjct: 783  GGGSVPLGVRARLEVPHLSDHPAALEAFRAVVRPGTKLGRVVVLERLEAARCVRVSRKPS 842

Query: 611  LI--NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
            L+   +A +LP     +   +V+ GYV ++     +VRFLG LTG A   +  D   ++ 
Sbjct: 843  LLAAGAAGRLPRRFEEVVEGAVLPGYVASVTPDAVYVRFLGGLTGRAGLPQLSDVFVSEP 902

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
               +  GQSVR+ +   ++   R TL L+ S  +STD +F+ ++F   +++  L++    
Sbjct: 903  RLLFAEGQSVRAQVAVCDAARQRFTLMLRPSVTASTDGAFLLDYFKEMQQLQALRAEAEA 962

Query: 729  G-------------------------SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
                                      ++L     F +G +   +VHE  ++G+V   +EH
Sbjct: 963  EPGGGGGGGDGAAGNGAANGGSAAPPADLDPARVFPLGGLAAARVHEVKEYGIVCDMDEH 1022

Query: 764  SDVYGFI--THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 821
             DV G +  +H    G +   G+ ++  +LDV   + LV+LSLK   +    +  + R A
Sbjct: 1023 PDVVGLVPSSHAGALGPSPAVGTRVRGRVLDVVGHQGLVELSLKPGMVAAAEDGAAGRAA 1082

Query: 822  QKKKRKREASKDLGVHQTVNAIVEIVKEN-YLVLSLPEYNHSIGYASVSDYNTQK--FPQ 878
             ++ +        GV   V A+VE ++   YL+LSLP+++ ++ YA+V+DYNT +     
Sbjct: 1083 ARQLKP-------GV--AVEAVVEGIRPGEYLILSLPQHSAALAYAAVTDYNTPRPDLVP 1133

Query: 879  KQFLNGQSVIATVMALPSSSTAGRLL----LLLKAISETETSSSKRAKKKSSYDVGSLVQ 934
            + F  GQ + ATV A P  +  GR++    L           ++    KK + D GS+V+
Sbjct: 1134 RTFTVGQRLTATVAATPPDAPLGRIVCHVPLTRIGGGAGGKGAAASGGKKVTLDPGSVVE 1193

Query: 935  AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK-SNK 993
            A +T I+P +L +                            +   G+TV A ++ +    
Sbjct: 1194 AVVTGIQPYQLDV----------------------------SVCGGKTVEAVVLGRLQTG 1225

Query: 994  PDMKKSFLWELSIKPSMLTVSEIGSKLL--FEECDVSIGQRVTGYVYKVDNEWALLTISR 1051
               +   +W+LS++PS L  ++ G   +       ++ GQ++  +V +V  +   L    
Sbjct: 1226 EGHRPGSVWDLSLRPSRLAKAKKGEPPVPSVTLSSLAPGQQLPCFVLEVAEDALWLGAGP 1285

Query: 1052 HLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1111
             ++ ++  LD++ +P  L +    F  G  V   VL++++++  L L L     G +  +
Sbjct: 1286 AVRGRVAALDASLDPDVLTDLSSTFPPGTVVLARVLAVSRKRNSLDLSLIDPCSGTTRGS 1345

Query: 1112 V---DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1168
            V     +         EG +V GRI  + +  GG+ V IG    G V  T++        
Sbjct: 1346 VAGGGAAATTAAPLPPEGALVMGRI--LAANGGGVRVSIGHRRAGSVALTDI-------- 1395

Query: 1169 LSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST- 1227
               YDE   D  +G  EG +V+ +VL       G F V LSLR S  G  + +   ++  
Sbjct: 1396 ---YDEWVPDARAGLREGAYVRVRVLGRD----GDFAV-LSLRPSRGGAVAGSKPSVTAA 1447

Query: 1228 -----------DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1276
                               L   + L     V GYVK   +KG F+ L R  D  + L N
Sbjct: 1448 GSKKQGGSSSSATAAAAPELISADSLKVGATVTGYVKRCDAKGLFLALDRFRDGHIKLVN 1507

Query: 1277 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS--EINNLSNLHV 1334
            LSDG++E P   FP G  +  RVL V     R+E+TL+++  +T+  +   + +LS L  
Sbjct: 1508 LSDGFIEDPAAAFPAGMQLEARVLRVGE-GGRIELTLRSATRQTSGSAAPAVQSLSELRP 1566

Query: 1335 GDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1393
            G +V G+++RVE +G+F+ +  N  LVGL H+SEL++  V +I +++++ + V+  + KV
Sbjct: 1567 GQLVSGRVRRVERFGVFVEVGGNPGLVGLAHISELADGPVKDINSVFKSKQLVRAVVTKV 1626

Query: 1394 DKEKRRISLGMKSS 1407
            D E  R+SL MK S
Sbjct: 1627 DVEASRLSLSMKPS 1640



 Score =  325 bits (832), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/327 (49%), Positives = 221/327 (67%), Gaps = 30/327 (9%)

Query: 1504 EKNNRHAKKKEKEEREQEIRAAE-ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1562
            +K ++  KK+ KE+RE EIRAAE  RL    A   P +FERLV SSPNSSFVWIKYMA  
Sbjct: 1864 KKLSKGQKKRLKEQRELEIRAAELARLSGSAAATGPADFERLVLSSPNSSFVWIKYMALH 1923

Query: 1563 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN--PPEEAVVKVFQRAL 1620
            L   DV+ AR +A+RAL TIN REE EK N+WVA+ NLEN YG+   PEEAV+++ +RAL
Sbjct: 1924 LGKGDVDAARKVAQRALDTINYREEGEKFNVWVAWLNLENAYGSSPSPEEAVMELLKRAL 1983

Query: 1621 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ----- 1675
            QY D KK++LA LG++ER+ ++ LA++++  + KKF  S KVW R ++R L++       
Sbjct: 1984 QYTDQKKMYLAALGIFERSGRDDLAEQVVRTLTKKFGGSAKVWARALERSLQKGDGETPI 2043

Query: 1676 ----------------------EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
                                  +  + +++RAL SLP  KHIK + + A+ EF+ G A+R
Sbjct: 2044 FISYVPPSPVPYANFLRALRVAQSARQLLERALQSLPPRKHIKALVRAALAEFRLGSAER 2103

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
            GR + EG+L  YPKR DLW++Y+DQE++ G+   IR LFERA  L LPPKKMKFLF++YL
Sbjct: 2104 GRGILEGVLRNYPKRLDLWNVYIDQELKTGEQQRIRALFERATHLPLPPKKMKFLFRRYL 2163

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVESTL 1800
            EYEK  G+   +E+VK++AME+VES+L
Sbjct: 2164 EYEKEEGDTAAVEHVKRRAMEFVESSL 2190



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 524  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 583
            P  +S D L K+G+ V+G V     +A  +++    +  G I   +L+D         + 
Sbjct: 1465 PELISADSL-KVGATVTGYVKRC--DAKGLFLALDRFRDGHIKLVNLSDGFIEDPA--AA 1519

Query: 584  IKPGYEFDQLLVLDNESSNL---LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 640
               G + +  ++   E   +   L SA      SA       S + P  +V G V  +  
Sbjct: 1520 FPAGMQLEARVLRVGEGGRIELTLRSATRQTSGSAAPAVQSLSELRPGQLVSGRVRRVER 1579

Query: 641  TGCFVRFLGR--LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
             G FV   G   L G A  S+  DG   D++  +   Q VR+ +  V+ E  R++LS+K 
Sbjct: 1580 FGVFVEVGGNPGLVGLAHISELADGPVKDINSVFKSKQLVRAVVTKVDVEASRLSLSMKP 1639

Query: 699  SC 700
            S 
Sbjct: 1640 ST 1641


>gi|428178388|gb|EKX47263.1| hypothetical protein GUITHDRAFT_137461 [Guillardia theta CCMP2712]
          Length = 1592

 Score =  521 bits (1341), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 429/1467 (29%), Positives = 725/1467 (49%), Gaps = 120/1467 (8%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNLLP--TIFHV 55
            M L G V EV + D  I LP  L G   +   +D L  +L+  +E  E +  P      +
Sbjct: 135  MLLCGFVKEVRQADATISLPNNLTGWVEIDEISDELSAVLEQVLEDEEADAPPLEDYIWI 194

Query: 56   GQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 112
            G  V C++L    L    K+  K  I +SL+ S +   L+L+T+ +G+ L   V S ++ 
Sbjct: 195  GMPVRCVILSTAVLSTAGKQQHK-NISVSLKPSRVNSALALDTLHKGLSLYGAVSSKQEK 253

Query: 113  GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 172
            GY +  G    T FLP     E S  ++K G LL+  V+ + +  K+  +S+  +++   
Sbjct: 254  GYTISLGTSEATAFLP---FQEVSRGELKVGQLLETYVKKVKKEHKLAIVSTQRESLEDS 310

Query: 173  VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 232
            +TK+++ +++D L+PGM+   +V  + E+G+++ FL +F GT+D+FHL     +      
Sbjct: 311  LTKEIESLTLDNLLPGMIFKCKVAKVHESGLVVRFLNFFFGTIDLFHL-PLVGSGKGVEQ 369

Query: 233  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---SHVKVGDIYDQSKVVRVDRGL 289
            +++ + V ARI+ +D  +  +GL+L  ++L +  PP   + VK+G  +D + V RVD  +
Sbjct: 370  FSEKQVVTARIISLDVGANRIGLSLRRHVLDSLPPPYVQADVKMGQRFDGAIVRRVDPEV 429

Query: 290  GLLLDIP---STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 346
            G+LL++        S   YV IS+V++E V K+EK+   G  V  R++GF   +GL    
Sbjct: 430  GVLLEVQLGGEGSESLEGYVHISNVSDERVEKVEKEVAVGKEVSCRVIGFSWADGLINMS 489

Query: 347  LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 406
            +K S     V  + D+ PG +VK KV  +   G +V     V+   P  H ++  +V P 
Sbjct: 490  MKPSVLAAEVLLYDDLTPGDLVKVKVERLSEEGCLVSISDNVRGYIPSSHFADVALVNPE 549

Query: 407  KKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
            ++   G  +  RVL V  +++++ +T KKTLV S L +++   +A   +++HG + K+++
Sbjct: 550  RRLLPGKMIKARVLRVNPQTRQLLLTLKKTLVSSSLPLIARVEDAKVGMLSHGVVYKVQE 609

Query: 465  HGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
             G  V F+   +GF PRSELG++   E     +   QV+K R++S     +RI LS    
Sbjct: 610  SGVLVSFFGTAKGFLPRSELGIEQEAERVEDCFKPDQVLKVRVLSVEVDRKRIVLSLKAA 669

Query: 524  PTR---VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 580
                  ++    + +G LV   ++VV      + V A   + G +P  HLADH   A + 
Sbjct: 670  KENSQIIATSARLTVGELVE--MEVVEKQEEALLVRAANGAVGFLPRPHLADHSNLAALA 727

Query: 581  KSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVC 636
               ++P       LVLD     S  L++ K SL+++ ++   PS  + +HP   + GYV 
Sbjct: 728  FQQLQPEARL-TCLVLDLLANKSRYLVTVKPSLLSAVREENFPSSLAQLHPQQFLQGYVF 786

Query: 637  NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
            ++   G FVRFLGRLT  AP S    G   D    +  GQSVR  ++           +L
Sbjct: 787  SVKSCGVFVRFLGRLTALAPSSSLAAGHVDDPQSLFEEGQSVRCCVV-----------TL 835

Query: 697  KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 756
            K S C STD+SF++    +E    ++  ++  G E K       G V+E +V E+   GV
Sbjct: 836  KPSICLSTDSSFLKS---MEATEQLVLEAQMKGGESKRA-----GQVVEEQVVEALCVGV 887

Query: 757  V---VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
                + FE    + G    H    A V +G   +  +L       L+D   + V++    
Sbjct: 888  KGKELHFELPGSLVGVCPPHLHGRAKVTTGKRYKVCVL-------LIDKLRERVYVGMED 940

Query: 814  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 873
            E  ++ QA KK + +E  ++L    +V  IV++V E  +VLSLP+ +  +  AS+ D+N 
Sbjct: 941  ELVASLQASKKGKGKEKEQELMPADSVRGIVQLVGEERVVLSLPQ-SRKLAVASIEDFNV 999

Query: 874  Q-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV--- 929
            + +  +KQF+ GQS+   V+        G  +L+++A S +  +  +  +K    ++   
Sbjct: 1000 RGERARKQFVPGQSMDVLVL-----EATGAPVLVMRADSGSGKTQRREGQKVDDEELMRN 1054

Query: 930  -----------------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVV 970
                             G LV+  +  +K     ++ G G  G I + +  D  +     
Sbjct: 1055 GENCKGARLTSMEEAERGKLVKGIVHSVKATHANVRLGGGLRGVIDLLDAMDPEEMREGK 1114

Query: 971  ENLFSNFKIGQTVTARIIAK-SNKPDMKKSFLWELSIKPSMLTVSE---IGSKLLFEECD 1026
            EN  S  + GQ + AR++   S     + + L  LSI+PS L   E   +  +   +E  
Sbjct: 1115 ENRLSMLQQGQAIDARVLGVFSPARAGRDTRLVALSIRPSELAQPEETPLTKRPSLDELK 1174

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
                        + D  W  L  S  LK ++  LD++ E + L+  ++ F +G+ V   V
Sbjct: 1175 EGEEVEGMVEKVEGDCLWVHLGSS--LKGRVEQLDASRELTVLENLKKNFKVGQGVRASV 1232

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1146
            ++++  K  + L L    +   +K         +  I  G++V  +I K   G G  V++
Sbjct: 1233 IAVDVGKSRVDLRLLEEGEKGKEKGSGRKRKKGEEAIQVGEVVPAKIVKARPGFG-FVLK 1291

Query: 1147 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1206
            +G H +GRVH  ++ +  V  PLS +  GQ            V+C VLE           
Sbjct: 1292 LGLHSFGRVHICDIADAAVDAPLSLFKVGQL-----------VRCCVLEAEED-----GF 1335

Query: 1207 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE--KIEDLSPNMIVQGYVKNVTSKGCFIML 1264
             LSLR S   +S     +    V   G   E   +++L+   ++ GYVK+ +S G F+ L
Sbjct: 1336 ALSLRPSR--VSGKRRGEEEEAVREHGAFPEVSSVKELAVGQLLSGYVKSASSAGVFVQL 1393

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
             R++ A+V +S LSDGYV+  +  FP G+ V+GRV+SVE   ++V+++LK S        
Sbjct: 1394 GRQVTARVKISELSDGYVKDVKANFPPGRRVSGRVISVEVKKEQVDLSLKRS---VVLGK 1450

Query: 1325 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                 S+L VG +V G +K V+S+G+F+ I  + L GLCH+SE+ E+ V ++   ++ G+
Sbjct: 1451 RRVGWSDLQVGQVVAGAVKSVQSFGVFVRIRGSELDGLCHISEVGEEFVRDLSKQFKQGD 1510

Query: 1385 KVKVKILKVDKEKRRISLGMKSSYFKN 1411
            KVK KIL++D +++ ISLGMK  Y ++
Sbjct: 1511 KVKAKILRMDPQRKTISLGMKPEYLQD 1537


>gi|395742011|ref|XP_002821182.2| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Pongo abelii]
          Length = 1839

 Score =  488 bits (1256), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 422/1497 (28%), Positives = 719/1497 (48%), Gaps = 174/1497 (11%)

Query: 379  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV----KSKRITVTHKKT 434
            GA  +   GV A   L H+S+ + V   + FK G     R++      ++ ++ +T KKT
Sbjct: 433  GATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDXLCDPEAXKLMMTLKKT 492

Query: 435  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 494
            L++SKL +++ YA+A   L  HG+I +++ +GC V+FYN VQG  P+ EL  +   +P  
Sbjct: 493  LIESKLPVITCYADAKPGLQIHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPER 552

Query: 495  MYHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVD 544
            +++ GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V 
Sbjct: 553  VFYTGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINVGQLVDVKVL 612

Query: 545  VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 604
              T + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++L
Sbjct: 613  EKTKDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVL 671

Query: 605  LSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 662
            L  K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D
Sbjct: 672  LCRKPALVSTVEGGQDPKNFSEIHPGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSD 731

Query: 663  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIA 720
                  S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +      L +  E++ 
Sbjct: 732  KFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQ 791

Query: 721  MLQS--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAG 777
             ++S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG
Sbjct: 792  GVRSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAG 851

Query: 778  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
              VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       H
Sbjct: 852  QEVESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------H 896

Query: 838  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 896
            Q   AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 897  Q---AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEP 953

Query: 897  SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 937
              T   LLL ++  +   T    R                     KK +  +G +V   +
Sbjct: 954  GVTG--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTV 1011

Query: 938  TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 997
              IKP  + +    G  G IH + + DD         +  K+G+ VTAR+I      DM 
Sbjct: 1012 KSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKMVTARVIGGR---DM- 1066

Query: 998  KSFLW-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV-- 1037
            K+F +             ELS++PS L    T     S    E+      GQ VT ++  
Sbjct: 1067 KTFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKK 1126

Query: 1038 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1097
            Y V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L 
Sbjct: 1127 YNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLC 1186

Query: 1098 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1157
            L L             I    ++    EG++  GR+ K+     GL V           F
Sbjct: 1187 LSL-------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP--------F 1220

Query: 1158 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1217
             ++  + +      Y E    PL  +   + V+C +L  +  V     + LSLR      
Sbjct: 1221 GKIGTVSIFHMSDSYSEM---PLEDFVPQKVVRCYILSTADNV-----LTLSLR------ 1266

Query: 1218 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1277
            SS  + +  + V+ P   +  I+D+    +++GY+ ++   G F  L   +      S++
Sbjct: 1267 SSRTNPETKSKVEDP--EINSIQDIKEGQLLRGYIGSIQPHGVFFRLGPSVVGLARYSHV 1324

Query: 1278 SDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1334
            S   +       K  P GKL+  RVL +      VE++    D+      + + LS    
Sbjct: 1325 SQHSLSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLE 1379

Query: 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGE 1384
            G +   + ++ E+       E  N       ++  ++ VD            +   R G 
Sbjct: 1380 GPLPKQEERKTEAGERDQKAEKKNQKRNEKKNQKGQEEVDLPSKEKQQPQKPQAQKRGGR 1439

Query: 1385 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSS 1444
            + +    +   E+ R+S   K +    + D+L      E  E  EE     +    +   
Sbjct: 1440 ERR----ESGSEQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPKEK--QTKP 1493

Query: 1445 VAVQDMDMESEDGGSLVLAQIES-RASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID 1503
                 + + S   G    A+++S   ++PPL  + D E+ +  +  ++            
Sbjct: 1494 AEAPRLQLSS---GFAWNARLDSLTPALPPLAESSDSEEDEKPHQATK------------ 1538

Query: 1504 EKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFM 1562
             K ++  ++ EK++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF 
Sbjct: 1539 -KKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFH 1597

Query: 1563 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1622
            L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY
Sbjct: 1598 LQAMEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQY 1655

Query: 1623 CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAV 1681
             +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V
Sbjct: 1656 NEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRV 1715

Query: 1682 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1741
            +QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+
Sbjct: 1716 LQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIK 1775

Query: 1742 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1776 HGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1832



 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 132/432 (30%), Positives = 205/432 (47%), Gaps = 30/432 (6%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
           M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 136 MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 195

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
             G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  + S+EDHG
Sbjct: 196 SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTISSLEDHG 253

Query: 114 YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
           Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 254 YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSIGHSE 313

Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
           VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 314 VSTAIATEEQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 373

Query: 229 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
           + N     + V A IL V P +R V L+L P  L    P + +   K+G + D   V   
Sbjct: 374 FSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQKLGAVLDDIPVQGF 428

Query: 286 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG-FRHLEGLAT 344
            +  G    +    +   AY  +S +++ +     + +K G+  + RI+      E    
Sbjct: 429 FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDXLCDPEAXKL 485

Query: 345 GI-LKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
            + LK +  E    ++  ++D KPG+ + G +I V  +G IV+F   V+ L P   +S  
Sbjct: 486 MMTLKKTLIESKLPVITCYADAKPGLQIHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTE 545

Query: 401 EIVKPGKKFKVG 412
            I  P + F  G
Sbjct: 546 YIPDPERVFYTG 557



 Score = 47.4 bits (111), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 20/187 (10%)

Query: 1232 PGKHL-----EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESP 1285
            PG+ L     +K+  +  ++ VQG+ K     G    L   + A   LS+LSD   V +P
Sbjct: 404  PGRPLTRLSCQKLGAVLDDIPVQGFFKKA---GATFRLKDGVLAYARLSHLSDSKNVFNP 460

Query: 1286 EKEFPIGKLVAGRVLS--VEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIG 1340
            E  F  G     R++    +P + ++ +TLK    +T  +S+   I   ++   G  + G
Sbjct: 461  EA-FKPGNTHKCRIIDXLCDPEAXKLMMTLK----KTLIESKLPVITCYADAKPGLQIHG 515

Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
             I RV+ YG  +   N N+ GL    ELS +++ + E ++  G+ VKV +L  +  K R+
Sbjct: 516  FIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERM 574

Query: 1401 SLGMKSS 1407
             L  K S
Sbjct: 575  LLSFKLS 581



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S++ PGM++ G V ++  +G  +QFP G+  L P   MS+  +      F  G  +V +V
Sbjct: 692 SEIHPGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKV 751

Query: 420 LGVKSKR 426
             V  ++
Sbjct: 752 TNVDEEK 758


>gi|224138158|ref|XP_002322744.1| predicted protein [Populus trichocarpa]
 gi|222867374|gb|EEF04505.1| predicted protein [Populus trichocarpa]
          Length = 280

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/279 (82%), Positives = 256/279 (91%)

Query: 1519 EQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1578
            EQEI AAEER LE+D PRT DEFE ++RSSPN+SF+WI YM FMLS+AD+EKARSIAERA
Sbjct: 2    EQEISAAEERRLEEDEPRTADEFEMVIRSSPNNSFLWIAYMRFMLSLADIEKARSIAERA 61

Query: 1579 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1638
            L TINIREE+EKLNIWVAYFNLENEYGNPPE+AV KVFQRALQYCDPKKVHLALL +Y++
Sbjct: 62   LNTINIREEDEKLNIWVAYFNLENEYGNPPEDAVKKVFQRALQYCDPKKVHLALLKMYKK 121

Query: 1639 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFI 1698
            T QNKLA+ELL KMIKKFKHSCK WL+RV+ LLKQ+Q+GVQ+VVQRALL LPRHKHIKFI
Sbjct: 122  TNQNKLAEELLDKMIKKFKHSCKFWLKRVKWLLKQKQDGVQSVVQRALLCLPRHKHIKFI 181

Query: 1699 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1758
            SQTAI EFK GVADRGR++FE IL EYPKRTDLWS+YLDQEI+LGD D+IR LFERAISL
Sbjct: 182  SQTAIREFKCGVADRGRTLFEEILREYPKRTDLWSVYLDQEIKLGDADVIRSLFERAISL 241

Query: 1759 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            SLPPKKMKFLFKKYLEYEKS G+E++IE VKQKAMEYV+
Sbjct: 242  SLPPKKMKFLFKKYLEYEKSYGDEKQIESVKQKAMEYVQ 280


>gi|326433657|gb|EGD79227.1| hypothetical protein PTSG_12966 [Salpingoeca sp. ATCC 50818]
          Length = 2005

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 404/1453 (27%), Positives = 695/1453 (47%), Gaps = 151/1453 (10%)

Query: 52   IFHVGQLVSCIV--LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
            +F VGQ + C V   +L +++  I      L++  + + KGL    + +G V+ A VKSI
Sbjct: 182  LFSVGQQIVCRVKSTELKNNRPIIN-----LTVNPTAINKGLETAALVKGRVVAACVKSI 236

Query: 110  EDHGYILHFGLPSFTGFLPRNN---LAENSGI-DVKPG-LLLQGVVRSIDRTRKVVYLSS 164
            E+HGY+L  G+   TGFL  NN   L E  G   + PG  LL  +  ++   R    +++
Sbjct: 237  EEHGYVLDLGVGHATGFLSTNNAKPLCEKLGTKSLVPGHPLLVALTTTVKGGRAAKVIAA 296

Query: 165  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
              +  +  +T +   +++  L  G++V  +V++   +G++ S L  F   V  +HL +  
Sbjct: 297  PSEVAATKLTDE--EVTLKQLRAGLLVDAKVKAHTRSGLIASALG-FDANVHYYHLPHVS 353

Query: 225  P---TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR--APPSHVKVGDIYDQ 279
                    K  Y +   V ARI+F +P + ++ L+L P  +  R  A  +   +G I + 
Sbjct: 354  GGDVQKRLKTAYPEGSVVPARIIFSNPAASSLNLSLLPAHISMRGSAAGTGATLGAIVET 413

Query: 280  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 339
            + V+R D   G +LD+ +   +   +V  S V++++     KK K GS  R RI+    +
Sbjct: 414  ATVLRTDGRGGAVLDLGA---AGQGFVAPSRVSDKKSDASLKKLKPGSVHRARIISVHPM 470

Query: 340  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 399
            + +    L+ S  +   + + D+  G VV+  V +++ +GA+V+    ++ L P  H ++
Sbjct: 471  DNIVAVSLQKSVLDLPYYRYEDIPAGAVVEATVESLEEYGALVRLSDTIRGLVPALHFAD 530

Query: 400  FEIVKPGKKFKVGAELVFRVLG--VKSK---RITVTHKKTLVKSKLAILSSYAEATDRLI 454
              + KP  KF  GA++  RVL   V SK   R+  T KKTLV+S L +++S A A   ++
Sbjct: 531  VTLRKPAVKFHPGAKVKCRVLSNIVTSKGKRRLAFTCKKTLVESDLPVIASAASARRGML 590

Query: 455  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY-HVGQVVKCRIMSSIPAS 513
             HG+I  I   GC VRFYN V+G  P  EL      + +S Y   GQVVKCR++ +  A 
Sbjct: 591  AHGFIDSIRPFGCIVRFYNNVKGLVPLKELSATEKIKDASAYFKEGQVVKCRVVQTDQAK 650

Query: 514  RRINLSFMMKPTRVSEDDLVKL---------GSLVSGVVDVVTPNAVVVYVIAKGYSKGT 564
            RRI LSF+   T +SEDD+ K          GS+V+ V+D V  + + V++      + T
Sbjct: 651  RRIGLSFIH--TALSEDDINKQRDTVTALSPGSIVTAVIDSVQTSGLNVHLKENPLVRVT 708

Query: 565  IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESS-------NLLLSAKYSLINSAQQ 617
            I + HL DH   A  M S    G +   +++     +       +L++ AK +++ S  +
Sbjct: 709  IDSMHLTDHPSLAPQMASCFTEGQKITAVVIWKRNRNVSLSLKPSLMVQAKEAVVASKDE 768

Query: 618  LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 677
            L     H        GY+ +   T  FV  +G ++G  P  +A  G    +   +   Q+
Sbjct: 769  LKEGEQHF-------GYISSSTRTMSFVNLIGSVSGMCPIREASSGYVRSMESYFSPNQT 821

Query: 678  VRSNILDVNSETGRITLSLKQSCCS-STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V + +  +  + G++  S K +  S   +ASF+Q +F   E+IA+   S      LK+  
Sbjct: 822  VCARVHAI--KDGKVDFSFKSAQLSPQQEASFIQSYFADLERIAVSSRS----DVLKYKA 875

Query: 737  GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKA 796
            G ++ +V++    +  D+G+ V  ++     GFI+  Q  G  +E+   ++A +LDV  A
Sbjct: 876  GDVVSAVVK----DIKDYGITVVTDD--GCTGFISSAQAKGVPLETDGKVEAVVLDVDTA 929

Query: 797  ERLVDLSLKTVFIDRFREA------------------NSNRQAQKKKRKREASKDLGVHQ 838
            + ++DL ++   +   ++                      +Q   +  + +  + L   Q
Sbjct: 930  KSVLDLGVRPSLVAGAKKVLGGAGEKKKSKKKGKKGKKGKQQQDDEDDEDKPVEKLSQEQ 989

Query: 839  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 898
              +A +E+VKE+Y+VLS+ +    +  A+   YN ++ P ++   G      V+AL    
Sbjct: 990  EADATIELVKEDYMVLSVGDGRLVV--AACKSYNDRESPFRKHFPGNGARVKVLALDEKH 1047

Query: 899  T-----------AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL 947
            T            G+        ++ +          S   +G++++A+I+ I   +L L
Sbjct: 1048 TFVQVLAEDNKGKGKDAKKQAKKADADKKQVAALSPASDATMGAIIKAKISAIHKAQLNL 1107

Query: 948  KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII----AKSNK--PDMKKSF- 1000
            K   G  GR+HITEV   + +  ++ F  F   Q V  R+I    AK++   P    +F 
Sbjct: 1108 KLAGGGRGRVHITEVEQPQEDGAKS-FDPFTKNQVVECRVIGYRDAKNHNFLPITHTNFT 1166

Query: 1001 --LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1058
              + E S++   L+ S+           V +GQ++ G V  V+     + IS HL  ++ 
Sbjct: 1167 STIVEASMRAQDLSKSKKKVVPRLTADQVQVGQKLLGVVGAVEPNRMWIDISIHLSGRVS 1226

Query: 1059 ILDS-AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            + ++       L+  Q  +  G  +T  V+++   K  L              T+D +  
Sbjct: 1227 LQNAQPLNGDMLKSLQDMYEPGSPITTWVVAVKNGKVEL-------------STIDPATQ 1273

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
              Q      +I  GR+     G   L+V++G    GRVH      IC  D     D+   
Sbjct: 1274 EEQ---ENKEITTGRVH--TKGSIHLIVRLGRGKKGRVH------ICDVD-----DKFHA 1317

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH-L 1236
            DP   +   + VK K +E  +            +   D   S   S++ T    P    +
Sbjct: 1318 DPFQRFALHELVKVKKVEAPKHSHRNEQ-----QHKADCQLSMRPSEIDTSTAAPRDPII 1372

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
                D+  + IV+GYV NVT  G F+ LSR + A+V ++NLSD +++   K F  G+LV 
Sbjct: 1373 ASAADVKQDQIVRGYVCNVTDNGVFVALSRHVSARVKIANLSDLFIKDFTKVFKPGQLVK 1432

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
            G+VL V    K +E+TLK S +    +S+    ++L +G IV G IKRVES+G+F+TI+N
Sbjct: 1433 GKVLFVTDDGK-IELTLKRS-AVNPRESKPVRYNDLKIGQIVAGVIKRVESFGVFVTIDN 1490

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
            + L GL H+SE ++  +DN++ +Y  G+ VK KIL+++KEK+RISL +K S  +      
Sbjct: 1491 SKLSGLAHISECADAKIDNLDAVYNVGDAVKAKILRLNKEKKRISLTLKPSAVEG----- 1545

Query: 1417 QMSSEEESDEAIE 1429
            + S+ E+ +E+ E
Sbjct: 1546 KQSTGEDDEESGE 1558



 Score =  292 bits (747), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/298 (47%), Positives = 202/298 (67%), Gaps = 5/298 (1%)

Query: 1505 KNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1564
            K  +HA KK++E   +  R  EE++  K  P+TP +F+RLV  +PNSS+ WI+YMA+ L 
Sbjct: 1712 KRAKHAAKKQREAETR--RKEEEKVAGKKEPQTPMDFDRLVLQAPNSSYAWIRYMAYYLK 1769

Query: 1565 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1624
            + +++KAR++ +RAL TIN REE E++N+WVA  NLEN YG P    +  VF  A +  D
Sbjct: 1770 LTELDKARAVGKRALSTINFREEKERMNVWVALLNLENAYGTP--ATLNNVFTEACRQMD 1827

Query: 1625 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQ 1683
            P++++  L+ +YER+ + + ADEL   M KKF    +VWLR  +   K+ + +  + V++
Sbjct: 1828 PQRMYFHLVSIYERSHKFREADELFQVMCKKFNKVQRVWLRFAEFKFKRGRSKEARQVLE 1887

Query: 1684 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1743
            R+L SLPR  H+  I +  ILEFK G  +R R++FE +LS YPKR DLWSIYLDQE R+G
Sbjct: 1888 RSLKSLPRPDHVDTIVKFGILEFKQGDVERARTIFENVLSNYPKRVDLWSIYLDQEQRVG 1947

Query: 1744 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            D  +IR LFER I+L+L  KKM+F FK+YL++EK  G+   +E+VK+KA EYV S  A
Sbjct: 1948 DKGVIRALFERVITLNLSSKKMRFFFKRYLDFEKEHGDAGHVEHVKEKAREYVASKSA 2005


>gi|303313265|ref|XP_003066644.1| S1 RNA binding domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
 gi|240106306|gb|EER24499.1| S1 RNA binding domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1888

 Score =  445 bits (1144), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 374/1343 (27%), Positives = 666/1343 (49%), Gaps = 159/1343 (11%)

Query: 533  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 587
            V +G++V G ++  ++ P+ +  ++  +A G S G +P  H+AD  L+H    +   + G
Sbjct: 623  VTVGAVVKGKIEKLLMGPDGINGLLVSLADGIS-GLVPGVHMADAKLQHP---EKKFREG 678

Query: 588  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
             +   ++L ++ E   L L+ K SL++S   +  D   I P +   G   +I E G  ++
Sbjct: 679  LQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQ 738

Query: 647  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            F G + GF P S+  +    D S+ + +GQ V  N L V++E GR+ +S K       D 
Sbjct: 739  FYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK-------DP 791

Query: 707  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
            S + + +    K A               E    G ++ G V E +   +++  E+   +
Sbjct: 792  SIVTDAY----KSAF--------------ENVHPGLLVSGTVFEKSSDDLLLKLEDGG-L 832

Query: 767  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL-KTVFIDRFREANSNRQAQKKK 825
               ++  QL+ A     +   A +    K   L+ LS+ KT  + +     S + A +K 
Sbjct: 833  IARLSAEQLSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKG 892

Query: 826  RKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIGYASVSDYNTQKFP 877
                  +DL ++ +V  +V  + ++ + +         LP+      + + +D+      
Sbjct: 893  TLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFG----- 947

Query: 878  QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV-------- 929
               F+  QS+  +V ++     A R +L +K + + E    +R K K++ ++        
Sbjct: 948  ---FMRTQSISCSVSSI--DQDAQRFILTMKPVEKEEEKHERRYKTKNTNELSVSNPVDQ 1002

Query: 930  ----------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNF 977
                      G + +A IT +K  +L +       GRI ++EV D+  ++ +       +
Sbjct: 1003 DIKSLDDFITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRLY 1062

Query: 978  KIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1028
            K  Q V  +I+   +    K         K  ++ELS KPS L   ++    L +   V 
Sbjct: 1063 KPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDPISLEK---VK 1119

Query: 1029 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1088
            +G    G+V  + ++   L IS  ++ +L I+D + + +   + +R F IG A+   V +
Sbjct: 1120 VGSSFLGFVNNIGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVAA 1179

Query: 1089 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1148
            ++ +K  L L  +    G S K + IS+      + +G I+ G+++K+      ++VQ+ 
Sbjct: 1180 VDVDKNRLDLTAK---HGASSKKLTISD------LSKGMILLGKVTKVTER--QVLVQLN 1228

Query: 1149 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1208
              L G +   ++                 D  S  +   F K  VL +         V++
Sbjct: 1229 ESLVGAIGLLDMA----------------DDYSKINPANFHKNAVLRVCV-------VDV 1265

Query: 1209 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
             + +    +S   S  LST +      +  I+ L  N IV+G+V+ +   G F+ L   +
Sbjct: 1266 DVPNKRVALSVRPSKVLSTSLPVEDPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNV 1325

Query: 1269 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1328
             A V +S+LSD Y++  + EF I ++V GR+  V+P +K+V++TLK S      +  +  
Sbjct: 1326 TAYVRVSDLSDSYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLK- 1384

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
            L +L  G IV G++++VE +G F++I+ T NL GLCH SE++E  + +   +Y  G+ VK
Sbjct: 1385 LKDLKPGQIVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKITDARKLYEQGDIVK 1444

Query: 1388 VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAV 1447
             KILK+D +K +ISLG+K+SYF ND+D       E + E  EE G      +   + +  
Sbjct: 1445 AKILKIDLKKDQISLGLKASYFNNDSDEADSDMSEGASE--EESGDDELGGVALKAGIDD 1502

Query: 1448 QDMDMESED---GGSLVLAQIESRASVPPLEVNLDDEQPDMDNG-ISQNQGHTDEAKTID 1503
            +D+  E ED   GG  +   +   A    ++V + D   D +   ++     T ++  I 
Sbjct: 1503 EDLSDEGEDIIMGGVDLSNSLVQSADSDNVDVLMADADGDQEGALVTSGFDWTGDSYEIQ 1562

Query: 1504 EKNNRHA-------KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1556
            +  N  A         K+K+ R+ EI+      L+ + P+T D++ERL+   PNSS +W+
Sbjct: 1563 KGLNGAAFDSDDENMSKKKKRRKAEIQVDRTGDLDANGPQTVDDYERLLLGEPNSSLLWL 1622

Query: 1557 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1616
            KYMAF L + +V+KAR IAERAL++I++ ++ EK N+WVA  NLEN +G   ++++ +VF
Sbjct: 1623 KYMAFHLELGEVDKAREIAERALRSISLGQDTEKFNVWVAMLNLENTFGT--DDSLEEVF 1680

Query: 1617 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ 1675
            +RA QY D +++H  +  ++ ++++ + ADE+    + KKF  S  ++L     L     
Sbjct: 1681 KRACQYNDAQEIHEKMASIFIQSDKPEKADEIFQSALKKKFTQSPNLFLNYANFLFDTMA 1740

Query: 1676 --EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDL 1731
              +  +A++ RA+ SLP H H++  S+   LEF++  G  +RGR++FEG+LS +PKR DL
Sbjct: 1741 APDRGRALLPRAMQSLPPHTHVELTSKFGQLEFRSLHGDVERGRTVFEGLLSSFPKRVDL 1800

Query: 1732 WSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYEK 1777
            W+I LD EI++GDVD +R LFER + +               L  K+ KF FKK+L +E+
Sbjct: 1801 WNILLDLEIKVGDVDQVRRLFERVLGIGRGVGADGSKAGMKKLKDKQAKFFFKKWLTFEE 1860

Query: 1778 SV--GEEERIEYVKQKAMEYVES 1798
             +  G+++ ++ VK +A EYV+S
Sbjct: 1861 KISNGDDKMVDEVKARAAEYVKS 1883



 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 284/1269 (22%), Positives = 524/1269 (41%), Gaps = 123/1269 (9%)

Query: 2    KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN-------------- 47
            K+ G V+ +   ++ + LP  L G      A+  IL  +IE    N              
Sbjct: 231  KILGQVSSIGTHNISLALPNNLTGYVPWT-AVSKILKGKIEKLLKNAEDDENDEDTDEDD 289

Query: 48   -LLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTA 104
              L +   +GQ +   V    D+   +GK  ++I LS+       GLS   +     + A
Sbjct: 290  FDLKSYVRLGQYLRASVSSTTDNGHGLGKGKKRIELSVDPQEANAGLSKSDMIVDSTVQA 349

Query: 105  YVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVY 161
             V S+ED+G I+  GL   +  GF+    L  +  +  VK G +   VV   +    V+ 
Sbjct: 350  SVLSVEDYGLIMDLGLEDGNTRGFMSSKELPPSVDLSQVKEGAVFLCVVTGHNAAGNVIK 409

Query: 162  LSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
            LS++    +            +I+  +PG      +  +  NG+  + +      VD  H
Sbjct: 410  LSANLQKAASAKKSHYLSSAPTINTFLPGTAAEILLTEVTPNGMTGNIMGMLDVVVDAVH 469

Query: 220  LQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVK----- 272
              +T  T +    Y    K   R++   P+     +G ++  ++L  +  P+ V      
Sbjct: 470  SGSTDETKDLTKKYRPATKATGRLICTYPSDENPKLGFSILDHVL--KFSPTSVADPQDR 527

Query: 273  -----VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYK 324
                 +  I  + KV++VD  LGL + + +T      ++ IS V + +V  L   E  +K
Sbjct: 528  DDKPAISAIIPEVKVIKVDPTLGLYVQLGNT--KHYGFIHISRVKDGKVSSLSSAEGPFK 585

Query: 325  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-G 379
             GS    RI+GF  L+ L    L+    +       DV  G VVKGK+    +  D   G
Sbjct: 586  VGSHHEGRIIGFNALDNLFLLSLEKKVIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGING 645

Query: 380  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 437
             +V    G+  L P  HM++ ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ 
Sbjct: 646  LLVSLADGISGLVPGVHMADAKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSLLH 705

Query: 438  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 497
            S+ AI   Y +      + G    I+++G  ++FY  V+GF P SE+      +PS  + 
Sbjct: 706  SESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQHFS 765

Query: 498  VGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVV 552
            +GQVV    +S      R+ +S    P+ V++      + V  G LVSG V   + + ++
Sbjct: 766  IGQVVNVNALSVDAEQGRLVVS-CKDPSIVTDAYKSAFENVHPGLLVSGTVFEKSSDDLL 824

Query: 553  VYVIAKGYSKGTIPTEHLADHL-EHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKY 609
            +  +  G     +  E L+D     A    + ++ G +   LL+L    ++ L+  S K 
Sbjct: 825  LK-LEDGGLIARLSAEQLSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKP 883

Query: 610  SLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 667
            SL  + ++  LP+    +  NS V G V NI + G FV FLG LTGF P+    D     
Sbjct: 884  SLKTALEKGTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTK 943

Query: 668  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 727
                +   QS+  ++  ++ +  R  L++K             +     E    L  S  
Sbjct: 944  ADFGFMRTQSISCSVSSIDQDAQRFILTMKPVEKEEEKHERRYKTKNTNE----LSVSNP 999

Query: 728  NGSELKWVEGFIIGSVIEGKVHESNDFGVVV----------SFEEHSDVYGFITHHQLAG 777
               ++K ++ FI G V + ++    D  + V             E  D +  I   +   
Sbjct: 1000 VDQDIKSLDDFITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPL 1059

Query: 778  ATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 835
               +   V+   IL V  A+  + + +S +T  +  F  +      +       + + + 
Sbjct: 1060 RLYKPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDPISLEKVK 1119

Query: 836  VHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMA 893
            V  +    V  + ++ L L++ P     +    +S D       ++ F  G ++  TV A
Sbjct: 1120 VGSSFLGFVNNIGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVAA 1179

Query: 894  LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 953
            +       RL L  K       +SSK+    S    G ++  ++T++   ++ ++     
Sbjct: 1180 VDVDKN--RLDLTAK-----HGASSKKL-TISDLSKGMILLGKVTKVTERQVLVQLNESL 1231

Query: 954  HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1013
             G I + ++ DD S +    F        V    +   + P+ + +    LS++PS +  
Sbjct: 1232 VGAIGLLDMADDYSKINPANFHK----NAVLRVCVVDVDVPNKRVA----LSVRPSKV-- 1281

Query: 1014 SEIGSKLLFEECDVSIGQR------VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
              + + L  E+ +++   R      V G+V ++ +    +T+  ++ A + + D     S
Sbjct: 1282 --LSTSLPVEDPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNVTAYVRVSD--LSDS 1337

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
             L+E+Q  F I + V G +  ++ E K +++ L+      S    D         +  G 
Sbjct: 1338 YLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQ-----SALDPDYKPPLKLKDLKPGQ 1392

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            IV G++ K+      + +    +L G  H +E+    ++           D    Y++G 
Sbjct: 1393 IVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKIT-----------DARKLYEQGD 1441

Query: 1188 FVKCKVLEI 1196
             VK K+L+I
Sbjct: 1442 IVKAKILKI 1450



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 144
            +SLE V+ G     +V +I D    L+   PS  G LP  +++++  +  D+K     G 
Sbjct: 1113 ISLEKVKVGSSFLGFVNNIGDDCLWLNIS-PSVRGKLPIMDISDDLALAGDIKRTFPIGS 1171

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
             L+  V ++D  +  + L++     SK +T       I  L  GM++  +V  + E  V+
Sbjct: 1172 ALKVTVAAVDVDKNRLDLTAKHGASSKKLT-------ISDLSKGMILLGKVTKVTERQVL 1224

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD---PTSRAVGLTLNPY- 260
            +       G + +  + + +   N     N HK    R+  VD   P  R V L++ P  
Sbjct: 1225 VQLNESLVGAIGLLDMADDYSKIN---PANFHKNAVLRVCVVDVDVPNKR-VALSVRPSK 1280

Query: 261  LLHNRAPPSHVKVGDIYDQSKVVRVDRG-------LGLLLDIPSTPVSTPAYVTISDVAE 313
            +L    P    ++  I D+ KV  + RG       +GL + +     +  AYV +SD+++
Sbjct: 1281 VLSTSLPVEDPEIASI-DRLKVNDIVRGFVRRIADIGLFVTLGH---NVTAYVRVSDLSD 1336

Query: 314  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKG 370
              +++ + +++    VR RI             LK SA +          D+KPG +V G
Sbjct: 1337 SYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTG 1396

Query: 371  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 428
            KV  V+ FGA V   G   +  LC    M+E +I    K ++ G  +  ++L +  K+  
Sbjct: 1397 KVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKITDARKLYEQGDIVKAKILKIDLKKDQ 1456

Query: 429  VT 430
            ++
Sbjct: 1457 IS 1458


>gi|320036441|gb|EFW18380.1| rRNA biogenesis protein RRP5 [Coccidioides posadasii str. Silveira]
          Length = 1830

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 375/1343 (27%), Positives = 665/1343 (49%), Gaps = 159/1343 (11%)

Query: 533  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 587
            V +G++V G ++  ++ P+ +  ++  +A G S G +P  H+AD  L+H    +   + G
Sbjct: 565  VTVGAVVKGKIEKLLMGPDGINGLLVSLADGIS-GLVPGVHMADTKLQHP---EKKFREG 620

Query: 588  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
             +   ++L ++ E   L L+ K SL++S   +  D   I P +   G   +I E G  ++
Sbjct: 621  LQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQ 680

Query: 647  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            F G + GF P S+  +    D S+ + +GQ V  N L V++E GR+ +S K       D 
Sbjct: 681  FYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK-------DP 733

Query: 707  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
            S + + +    K A               E    G ++ G V E +   +++  E    +
Sbjct: 734  SIVTDAY----KSAF--------------ENVHPGLLVSGTVFEKSSDDLLLKLEAGG-L 774

Query: 767  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL-KTVFIDRFREANSNRQAQKKK 825
               ++  QL+ A     +   A +    K   L+ LS+ KT  + +     S + A +K 
Sbjct: 775  IARLSAEQLSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKG 834

Query: 826  RKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIGYASVSDYNTQKFP 877
                  +DL ++ +V  +V  + ++ + +         LP+      + + +D+      
Sbjct: 835  TLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFG----- 889

Query: 878  QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV-------- 929
               F+  QS+  +V ++     A R +L +K + + E    +R K K++ ++        
Sbjct: 890  ---FMRTQSISCSVSSI--DQDAQRFILTMKPVEKEEEKHERRYKTKNTNELSVSNPVDQ 944

Query: 930  ----------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNF 977
                      G + +A IT +K  +L +       GRI ++EV D+  ++ +       +
Sbjct: 945  DIKSLDDFITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRLY 1004

Query: 978  KIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1028
            K  Q V  +I+   +    K         K  ++ELS KPS L   ++    L +   V 
Sbjct: 1005 KPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDPISLEK---VK 1061

Query: 1029 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1088
            +G    G+V  + ++   L IS  ++ +L I+D + + +   + +R F IG A+   V +
Sbjct: 1062 VGSSFLGFVNNIGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVAA 1121

Query: 1089 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1148
            ++ +K  L L  +    G S K + IS+      + +G I+ G+++K+      ++VQ+ 
Sbjct: 1122 VDVDKNRLDLTAK---HGASSKKLTISD------LSKGMILLGKVTKVTER--QVLVQLN 1170

Query: 1149 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1208
              L G +   ++                 D  S  +   F K  VL +         V++
Sbjct: 1171 ESLVGAIGLLDMA----------------DDYSKINPANFHKNAVLRVCV-------VDV 1207

Query: 1209 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
             + +    +S   S  LST +      +  I+ L  N IV+G+V+ +   G F+ L   +
Sbjct: 1208 DVPNKRVALSVRPSKVLSTSLPVEDPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNV 1267

Query: 1269 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1328
             A V +S+LSD Y++  + EF I ++V GR+  V+P +K+V++TLK S      +  +  
Sbjct: 1268 TAYVRVSDLSDSYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLK- 1326

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
            L +L  G IV G++++VE +G F++I+ T NL GLCH SE++E  V +   +Y  G+ VK
Sbjct: 1327 LKDLKPGQIVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVK 1386

Query: 1388 VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAV 1447
             KILK+D +K +ISLG+K+SYF ND+D       E + E  EE G      +   + +  
Sbjct: 1387 AKILKIDLKKDQISLGLKASYFNNDSDEADSDMSEGASE--EESGDDELGGVALKAGIDD 1444

Query: 1448 QDMDMESED---GGSLVLAQIESRASVPPLEVNLDDEQPDMDNG-ISQNQGHTDEAKTID 1503
            +D+  E ED   GG  +   +   A    ++V + D   D +   ++     T ++  I 
Sbjct: 1445 EDLSDEGEDIIMGGVDLSNSLVQSADSDNVDVLMADADGDQEGALVTSGFDWTGDSYEIQ 1504

Query: 1504 EKNNRHA-------KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1556
            +  N  A         K+K+ R+ EI+      L+ + P+T D++ERL+   PNSS +W+
Sbjct: 1505 KGLNGAAFDSDDENMSKKKKRRKAEIQVDRTGDLDANGPQTVDDYERLLLGEPNSSLLWL 1564

Query: 1557 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1616
            KYMAF L + +V+KAR IAERAL++I++ ++ EK N+WVA  NLEN +G   ++++ +VF
Sbjct: 1565 KYMAFHLELGEVDKAREIAERALRSISLGQDTEKFNVWVAMLNLENTFGT--DDSLEEVF 1622

Query: 1617 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ 1675
            +RA QY D +++H  +  ++ ++++ + ADE+    + KKF  S  ++L     L     
Sbjct: 1623 KRACQYNDAQEIHEKMASIFIQSDKPEKADEIFQSALKKKFTQSPNLFLNYANFLFDTMA 1682

Query: 1676 --EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDL 1731
              +  +A++ RA+ SLP H H++  S+   LEF++  G  +RGR++FEG+LS +PKR DL
Sbjct: 1683 APDRGRALLPRAMQSLPPHTHVELTSKFGQLEFRSLHGDVERGRTVFEGLLSSFPKRVDL 1742

Query: 1732 WSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYEK 1777
            W+I LD EI++GDVD +R LFER + +               L  K+ KF FKK+L +E+
Sbjct: 1743 WNILLDLEIKVGDVDQVRRLFERVLGIGRGVGADGSKAGMKKLKDKQAKFFFKKWLTFEE 1802

Query: 1778 SV--GEEERIEYVKQKAMEYVES 1798
             +  G+++ ++ VK +A EYV+S
Sbjct: 1803 KISNGDDKMVDEVKARAAEYVKS 1825



 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 289/1271 (22%), Positives = 524/1271 (41%), Gaps = 127/1271 (9%)

Query: 2    KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------------- 48
            K+ G V+ +   ++ + LP  L G      A+  IL  +IE    N              
Sbjct: 173  KILGQVSSIGTHNISLALPNNLTGYVPWT-AVSKILKGKIEKLLKNAEDDEIDEDTDEDD 231

Query: 49   --LPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTA 104
              L +   +GQ +   V    D+   +GK  ++I LS+       GLS   +     + A
Sbjct: 232  FNLKSYVRLGQYLRASVSSTTDNGHGLGKGKKRIELSVDPQEANAGLSKSDMIVDSTVQA 291

Query: 105  YVKSIEDHGYILHFGLPSFT--GFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKV 159
             V S+ED+G I+  GL      GF+    L    G+D   VK G +   VV   +    V
Sbjct: 292  SVLSVEDYGLIMDLGLEDVNTRGFMSSKELP--PGVDLSQVKEGAVFLCVVTGHNAAGNV 349

Query: 160  VYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 217
            + LS++    +            +I+  +PG      +  +  NG+    +      VD 
Sbjct: 350  IKLSANLQKAASAKKSHYLSSAPTINTFLPGTAAEILLTEVTPNGMTGKIMGMLDVVVDA 409

Query: 218  FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVK--- 272
             H  +T  T +    Y    K   R++   P+     +G ++  ++L  +  P+ V    
Sbjct: 410  VHSGSTDETKDLTKKYRPATKATGRLICTYPSDENPKLGFSILDHVL--KFSPTSVADPQ 467

Query: 273  -------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKK 322
                   +  I  + KV++VD  LGL + + +T      +V IS V + +V  L   E  
Sbjct: 468  DRDDKPAISAIIPEVKVIKVDPTLGLYVQLGNT--KHYGFVHISRVKDGKVSSLSSAEGP 525

Query: 323  YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF 378
            +K GS    RI+GF  L+ L    L+    +       DV  G VVKGK+    +  D  
Sbjct: 526  FKVGSHHEGRIIGFNALDNLFLLSLEKKVIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGI 585

Query: 379  -GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 435
             G +V    G+  L P  HM++ ++  P KKF+ G ++  R+L V  + +++ +T KK+L
Sbjct: 586  NGLLVSLADGISGLVPGVHMADTKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSL 645

Query: 436  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 495
            + S+ AI   Y +      + G    I+++G  ++FY  V+GF P SE+      +PS  
Sbjct: 646  LHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQH 705

Query: 496  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNA 550
            + +GQVV    +S      R+ +S    P+ V++      + V  G LVSG V   + + 
Sbjct: 706  FSIGQVVNVNALSVDAEQGRLVVS-CKDPSIVTDAYKSAFENVHPGLLVSGTVFEKSSDD 764

Query: 551  VVVYVIAKGYSKGTIPTEHLADHL-EHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SA 607
            +++ + A G     +  E L+D     A    + ++ G +   LL+L    ++ L+  S 
Sbjct: 765  LLLKLEAGGLI-ARLSAEQLSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSN 823

Query: 608  KYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 665
            K SL  + ++  LP+    +  NS V G V NI + G FV FLG LTGF P+    D   
Sbjct: 824  KPSLKTALEKGTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHL 883

Query: 666  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 725
                  +   QS+  ++  ++ +  R  L++K             +     E    L  S
Sbjct: 884  TKADFGFMRTQSISCSVSSIDQDAQRFILTMKPVEKEEEKHERRYKTKNTNE----LSVS 939

Query: 726  KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV----------SFEEHSDVYGFITHHQL 775
                 ++K ++ FI G V + ++    D  + V             E  D +  I   + 
Sbjct: 940  NPVDQDIKSLDDFITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQ 999

Query: 776  AGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 833
                 +   V+   IL V  A+  + + +S +T  +  F  +      +       + + 
Sbjct: 1000 PLRLYKPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDPISLEK 1059

Query: 834  LGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATV 891
            + V  +    V  + ++ L L++ P     +    +S D       ++ F  G ++  TV
Sbjct: 1060 VKVGSSFLGFVNNIGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTV 1119

Query: 892  MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGI 951
             A+       RL L  K       +SSK+    S    G ++  ++T++   ++ ++   
Sbjct: 1120 AAVDVDKN--RLDLTAK-----HGASSKKL-TISDLSKGMILLGKVTKVTERQVLVQLNE 1171

Query: 952  GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1011
               G I + ++ DD S +    F        V    +   + P+ + +    LS++PS +
Sbjct: 1172 SLVGAIGLLDMADDYSKINPANFHK----NAVLRVCVVDVDVPNKRVA----LSVRPSKV 1223

Query: 1012 TVSEIGSKLLFEECDVSIGQR------VTGYVYKVDNEWALLTISRHLKAQLFILDSAYE 1065
                + + L  E+ +++   R      V G+V ++ +    +T+  ++ A + + D    
Sbjct: 1224 ----LSTSLPVEDPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNVTAYVRVSD--LS 1277

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1125
             S L+E+Q  F I + V G +  ++ E K +++ L+      S    D         +  
Sbjct: 1278 DSYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQ-----SALDPDYKPPLKLKDLKP 1332

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            G IV G++ K+      + +    +L G  H +E+    V+           D    Y++
Sbjct: 1333 GQIVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVT-----------DARKLYEQ 1381

Query: 1186 GQFVKCKVLEI 1196
            G  VK K+L+I
Sbjct: 1382 GDIVKAKILKI 1392



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 144
            +SLE V+ G     +V +I D    L+   PS  G LP  +++++  +  D+K     G 
Sbjct: 1055 ISLEKVKVGSSFLGFVNNIGDDCLWLNIS-PSVRGKLPIMDISDDLALAGDIKRTFPIGS 1113

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
             L+  V ++D  +  + L++     SK +T       I  L  GM++  +V  + E  V+
Sbjct: 1114 ALKVTVAAVDVDKNRLDLTAKHGASSKKLT-------ISDLSKGMILLGKVTKVTERQVL 1166

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD---PTSRAVGLTLNPY- 260
            +       G + +  + + +   N     N HK    R+  VD   P  R V L++ P  
Sbjct: 1167 VQLNESLVGAIGLLDMADDYSKIN---PANFHKNAVLRVCVVDVDVPNKR-VALSVRPSK 1222

Query: 261  LLHNRAPPSHVKVGDIYDQSKVVRVDRG-------LGLLLDIPSTPVSTPAYVTISDVAE 313
            +L    P    ++  I D+ KV  + RG       +GL + +     +  AYV +SD+++
Sbjct: 1223 VLSTSLPVEDPEIASI-DRLKVNDIVRGFVRRIADIGLFVTLGH---NVTAYVRVSDLSD 1278

Query: 314  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKG 370
              +++ + +++    VR RI             LK SA +          D+KPG +V G
Sbjct: 1279 SYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTG 1338

Query: 371  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 428
            KV  V+ FGA V   G   +  LC    M+E ++    K ++ G  +  ++L +  K+  
Sbjct: 1339 KVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQ 1398

Query: 429  VT 430
            ++
Sbjct: 1399 IS 1400



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 122/286 (42%), Gaps = 52/286 (18%)

Query: 1142 GLVVQIG-PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            GL VQ+G    YG VH + +K+  VS   S   EG F  +  + EG+ +    L+     
Sbjct: 492  GLYVQLGNTKHYGFVHISRVKDGKVSSLSSA--EGPF-KVGSHHEGRIIGFNALD----- 543

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS--- 1257
               F + L  +                 +D P     ++ED++   +V+G ++ +     
Sbjct: 544  -NLFLLSLEKKV----------------IDQP---FLRLEDVTVGAVVKGKIEKLLMGPD 583

Query: 1258 --KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
               G  + L+  +   V   +++D  ++ PEK+F  G  V  R+LSV    +++ +TLK 
Sbjct: 584  GINGLLVSLADGISGLVPGVHMADTKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKK 643

Query: 1316 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV--------GLCHVSE 1367
            S     S+S I         DI  G     +S G F++I+    V        G   VSE
Sbjct: 644  S--LLHSESAIWK----DYRDIAPGN----QSPGTFVSIQENGAVIQFYGAVRGFLPVSE 693

Query: 1368 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
            +SE ++ +    +  G+ V V  L VD E+ R+ +  K      DA
Sbjct: 694  MSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCKDPSIVTDA 739



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 149/378 (39%), Gaps = 68/378 (17%)

Query: 1044 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL--- 1100
            +  + ISR    ++  L SA  P         F +G    G ++  N    L  L L   
Sbjct: 503  YGFVHISRVKDGKVSSLSSAEGP---------FKVGSHHEGRIIGFNALDNLFLLSLEKK 553

Query: 1101 ---RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL---SGVGGLVVQIGPHLYGR 1154
               +PF   + D TV             G +V G+I K+L    G+ GL+V +   + G 
Sbjct: 554  VIDQPFLR-LEDVTV-------------GAVVKGKIEKLLMGPDGINGLLVSLADGISGL 599

Query: 1155 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1214
            V    + +  +  P     E +F       EG  V  ++L ++   R    + L+L+ SL
Sbjct: 600  VPGVHMADTKLQHP-----EKKFR------EGLQVTARILSVNLEKR---QLRLTLKKSL 645

Query: 1215 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1274
                S    D                D++P     G   ++   G  I     +   + +
Sbjct: 646  LHSESAIWKDY--------------RDIAPGNQSPGTFVSIQENGAVIQFYGAVRGFLPV 691

Query: 1275 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1334
            S +S+ Y++ P + F IG++V    LSV+    R+ V+ K  D    + +  +   N+H 
Sbjct: 692  SEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK--DPSIVTDAYKSAFENVHP 749

Query: 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE----DHVDNIETIYRAGEKV-KVK 1389
            G +V G +    S  L + +E   L+      +LS+        N+  + R G+K+  + 
Sbjct: 750  GLLVSGTVFEKSSDDLLLKLEAGGLIARLSAEQLSDAAPSKAAANLARL-RVGQKLHDLL 808

Query: 1390 ILKVDKEKRRISLGMKSS 1407
            IL + K  R I +  K S
Sbjct: 809  ILSIRKTHRLIQVSNKPS 826


>gi|325088403|gb|EGC41713.1| ribosomal RNA processing protein RRP5 [Ajellomyces capsulatus H88]
          Length = 1817

 Score =  441 bits (1135), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 396/1439 (27%), Positives = 687/1439 (47%), Gaps = 196/1439 (13%)

Query: 459  ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 514
            +TK+E   G +V+F +   GF   S L  D     SS    Y V    + RI+     S 
Sbjct: 477  VTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVG---FSA 533

Query: 515  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 565
              NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 534  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 592

Query: 566  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 623
            P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 593  PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 649

Query: 624  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 650  DILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 709

Query: 684  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 743
            +V++E  ++ +S K    S+       EH              H G+             
Sbjct: 710  NVDAELRKLVVSCKDQLSSTEAYKRALEHI-------------HPGN------------T 744

Query: 744  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI----------QAAILDV 793
            + G V E ++  +++  E+   V      H   G    +G+ +          +  IL++
Sbjct: 745  VSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNM 804

Query: 794  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYL 852
             K+ RL+ ++ K           S +QA+++       +DL     V   V+ I+ +   
Sbjct: 805  QKSHRLIKVTNKP----------SLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLF 854

Query: 853  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 912
            V  L      +    V D +  K P   +   Q +  TV ++       R +L LK    
Sbjct: 855  VEFLGGLTGFVPKRLVDDDHVNK-PSFGYALAQPISLTVQSIEDDRQ--RFILTLKEPHT 911

Query: 913  TETSSSKRAKKKSSYD------------------VGSLVQAEITEIKPLELRLKFGIGFH 954
             +   S R K+  + +                   G + +A++  IK  ++ ++      
Sbjct: 912  GKQRVSDRDKESDNANQSSINPIDGDIKSLDDLTFGRITKAKVVSIKETQINVQLAENIQ 971

Query: 955  GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWE 1003
            GRI ++EV D    + +       FK  Q +  RII    A+S++  P   +S    ++E
Sbjct: 972  GRIDVSEVFDSWEAIKDRKQPLRFFKAKQILPVRIIGIHDARSHRFLPISHRSGKYPVFE 1031

Query: 1004 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1063
            LS KPS L  +++    L     V IG    G+V  + ++   ++IS +++ +L + D +
Sbjct: 1032 LSAKPSSLESTDLD---LLSLDKVKIGSAWIGFVNNIGDDCLWISISPNVRGRLRLTDVS 1088

Query: 1064 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1123
             + S L +    F +G A+  HV  ++ +K  L L  +    G S   + IS+       
Sbjct: 1089 DDLSLLSDITTNFPVGSAIKVHVTGVDTDKNRLDLSAK---HGGSPNKLTISD------F 1139

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
             +G+I+ GR++++      ++VQ+   + G ++  ++                 D  S  
Sbjct: 1140 SKGEILLGRVTRVTEH--QVLVQLSDTVVGAINLIDMA----------------DDYSKI 1181

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
            +   F K ++L +         +++  +  L  M S+     S  +  P   +  I  + 
Sbjct: 1182 NPADFHKNELLRVC-----VVDIDVPKKKILLSMRSSRVLSSSLPIQDP--EISSISQIK 1234

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
             N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +LV GRV+  +
Sbjct: 1235 VNDIVRGFVRRVADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVILAD 1294

Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGL 1362
            P S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I+ T NL GL
Sbjct: 1295 PESNKLQMSLKQSVLDPNYKTPIT-IKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGL 1353

Query: 1363 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-----DADNLQ 1417
            CH +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+     D +N+Q
Sbjct: 1354 CHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKDSDDESDGENVQ 1413

Query: 1418 MSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVN 1477
              SEE   E+  + G                D+++ES D  S+    +E   +    E +
Sbjct: 1414 DKSEENVSESQYDGG---------------MDLELESGDDISMGGVDLEDTMNGDNSESD 1458

Query: 1478 LDDEQPDM----DNGIS------------QNQGHTDEAKTIDEKNNRHAKKKEKEEREQE 1521
              D    M    D GI+             N   TDE    D  ++     K+K+ R+QE
Sbjct: 1459 SSDWDVQMTGTKDAGITGGLVTSGFDWNGNNTVGTDEDNESDSDSDNKTAVKKKKRRKQE 1518

Query: 1522 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1581
            I+      L+ + P++  ++ERL+   PNSS +W+KYMAF L +++V+KAR IAERAL++
Sbjct: 1519 IQVDRTGDLDTNGPQSVADYERLLLGEPNSSLLWLKYMAFQLELSEVDKAREIAERALRS 1578

Query: 1582 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1641
            I+I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ +
Sbjct: 1579 ISIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGK 1636

Query: 1642 NKLADELLYKMI-KKFKHSCKVWLRRVQRLL--KQQQEGVQAVVQRALLSLPRHKHIKFI 1698
            +  ADEL   ++ KKF  S  ++L     L   + + E  +A++ RA+ SLP H H+   
Sbjct: 1637 HDKADELFQAILKKKFTQSPNIYLNFATFLFDTRAEPERGRALLPRAIQSLPTHTHVDIT 1696

Query: 1699 SQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1756
            S+   LEF+  NG  +RGR++FEG++S +PKR DLW++ LD EI+ GD++ +R LFER +
Sbjct: 1697 SKFGQLEFRSPNGDIERGRTIFEGLISSFPKRVDLWNVLLDLEIKNGDMEQVRRLFERVL 1756

Query: 1757 SLSLP--------------PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
             L  P               K+ KF FKK+L +E+  G+E+ ++ VK +A +YV +  A
Sbjct: 1757 GLGHPIAADGTKPGAKRLKDKQAKFFFKKWLAFEEKTGDEKMVDEVKARAADYVRAIKA 1815



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 185/748 (24%), Positives = 322/748 (43%), Gaps = 52/748 (6%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL---------- 48
           K+ G V+ +N  D+ + LP  L G   L   +  L   ++  + ++++            
Sbjct: 162 KILGQVSSINAHDIGLSLPNNLTGYIPLTAVSKTLQQKIEKLLNSSQEEDDNSDGDDGGD 221

Query: 49  ----LPTIFHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 101
               L + F +GQ +   V   + +    K  GK+ I LS+       GLS   +     
Sbjct: 222 GDLDLKSYFKLGQYLRAAVTSTETEVNHGKVKGKKHIELSVDPREANSGLSKSDLVVNAT 281

Query: 102 LTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRK 158
           + A V S+EDHG ++  GL      GF+    +  +   + +K G +   VV   +    
Sbjct: 282 VQASVLSVEDHGLVMDLGLEDGQTRGFMSSKEIPHDLELLQIKEGTVFLCVVTGHNANGS 341

Query: 159 VVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
           VV LS++  T              +I+  +PG      +  +   G+    +      VD
Sbjct: 342 VVKLSANLPTAGSIKKSHFLASAPTINSFLPGTAAEILLTQVTSTGMAGKIMGMLDAVVD 401

Query: 217 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN---------PYLLHNRAP 267
           I     T    +    Y+   K+  R++   PT+  + L  +         P +L +++ 
Sbjct: 402 IVQSGATAGKEDITARYHVGAKIKGRLICTFPTAEPLKLGFSILDHVVKFTPTVLDHKSS 461

Query: 268 PSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 326
              V  +  I  + KV +V+ GLG+ +              +SD   + +   +  Y   
Sbjct: 462 CEGVPAISAIVPEVKVTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVD 521

Query: 327 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAI 381
           S    RI+GF  L+ L    L+    +       DV  G VVKGK+    I  D   G I
Sbjct: 522 STHEARIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLI 581

Query: 382 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 439
           V    G+  L P  HMS+ ++  P KKF+ G ++  R+L V  + +++ +T KKTL+ S+
Sbjct: 582 VSLADGISGLVPGMHMSDTKLQHPEKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSE 641

Query: 440 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 499
            +    Y++      + G I  I+ HG  V+FY  V+GF P SE+      +P+  +++G
Sbjct: 642 SSTWCDYSDILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIG 701

Query: 500 QVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYV 555
           QVV    ++     R++ +S    +  T   +  L  +  G+ VSG V   +   +++ +
Sbjct: 702 QVVNVHALNVDAELRKLVVSCKDQLSSTEAYKRALEHIHPGNTVSGTVFEKSNEDILLKL 761

Query: 556 IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLI 612
              G     +  EH++D          + I+ G + ++LL+L+ + S+ L+  + K SL 
Sbjct: 762 EDSGLV-ARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNMQKSHRLIKVTNKPSLK 820

Query: 613 NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 670
            + Q  +LP+    +   S V G+V NII  G FV FLG LTGF P+    D      S 
Sbjct: 821 QARQRGELPAKFEDLEEGSKVTGFVKNIIADGLFVEFLGGLTGFVPKRLVDDDHVNKPSF 880

Query: 671 TYYVGQSVRSNILDVNSETGRITLSLKQ 698
            Y + Q +   +  +  +  R  L+LK+
Sbjct: 881 GYALAQPISLTVQSIEDDRQRFILTLKE 908



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 22/248 (8%)

Query: 180  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 239
            ++I     G ++  RV  + E+ V++       G +++  + + +   N   D+++++ +
Sbjct: 1134 LTISDFSKGEILLGRVTRVTEHQVLVQLSDTVVGAINLIDMADDYSKIN-PADFHKNELL 1192

Query: 240  NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGL 289
               ++ +D   + + L++    + + + P         S +KV DI  +  V RV D GL
Sbjct: 1193 RVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSISQIKVNDIV-RGFVRRVADNGL 1251

Query: 290  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 349
             + L    T     AYV ISD+++  +++ + +++    VR R++            LK 
Sbjct: 1252 FVTLGHDVT-----AYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLKQ 1306

Query: 350  SAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVK 404
            S  +       T  D+K G  V GKV  V+ FGA +   G   +  LC    M+E ++  
Sbjct: 1307 SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVED 1366

Query: 405  PGKKFKVG 412
              K F+ G
Sbjct: 1367 ARKLFEKG 1374


>gi|119191894|ref|XP_001246553.1| hypothetical protein CIMG_00324 [Coccidioides immitis RS]
 gi|392864216|gb|EAS34971.2| rRNA biogenesis protein RRP5 [Coccidioides immitis RS]
          Length = 1829

 Score =  441 bits (1134), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 376/1344 (27%), Positives = 662/1344 (49%), Gaps = 161/1344 (11%)

Query: 533  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 587
            V +G++V G ++  ++ P+ +  ++  +A G S G +P  H+AD  L+H    +   + G
Sbjct: 564  VTVGAVVKGKIEKLLMGPDGINGLLVSLADGIS-GLVPGMHMADTKLQHP---EKKFREG 619

Query: 588  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
             +   ++L ++ E   L L+ K SL++S   +  D   I P +   G   +I E G  ++
Sbjct: 620  LQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQ 679

Query: 647  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            F G + GF P S+  +    D S+ + +GQ V  N L V++E GR+ +S K       D 
Sbjct: 680  FYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK-------DP 732

Query: 707  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV--VSFEEHS 764
            S + + +         +S+  N      V G +     +  + +  D G++  +S E+ S
Sbjct: 733  SIVTDAY---------KSAFENVHPGLLVSGTVFEKSSDDLLLKLEDGGLIARLSAEQLS 783

Query: 765  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 824
            D     +   LA   V    +    IL + K  RL+ +S K           S + A +K
Sbjct: 784  DAAPSKSAANLARLRV-GQKLHDLLILSIRKTHRLIQVSNKP----------SLKAALEK 832

Query: 825  KRKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIGYASVSDYNTQKF 876
                   +DL ++ +V  +V  + ++ + +         LP+      + + +D+     
Sbjct: 833  GTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFG---- 888

Query: 877  PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS---------- 926
                F+  QS+  +V ++     A R +L +  + + E    +R K K++          
Sbjct: 889  ----FMRTQSISCSVSSI--DQDAQRFILTMNPVEKEEEKHERRYKTKNTNELSVSNPVD 942

Query: 927  --------YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSN 976
                    +  G + +A IT +K  +L +       GRI ++EV D+  ++ +       
Sbjct: 943  QDIKSLDDFKTGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRL 1002

Query: 977  FKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDV 1027
            +K  Q V  +I+   +    K         K  ++ELS KPS L   ++G   L +   V
Sbjct: 1003 YKPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLGPISLEK---V 1059

Query: 1028 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1087
             +G    G+V  + ++   L IS  ++ +L I+D + + +   + +R F IG A+   V 
Sbjct: 1060 KVGNSFLGFVNNMGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVA 1119

Query: 1088 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1147
            +++ +K  L L  +    G S K + IS+      + +G I+ G+++K+      ++VQ+
Sbjct: 1120 AVDVDKNRLDLTAK---HGASSKKLTISD------LSKGMILLGKVTKVTER--QVLVQL 1168

Query: 1148 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1207
               L G +   ++                 D  S  +   F K  VL +         V+
Sbjct: 1169 NESLVGAIGLLDMA----------------DDYSKINPANFHKNAVLRVCV-------VD 1205

Query: 1208 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1267
            + + +    +S   S  LS  +      +  I+ L  N IV+G+V+ V   G F+ L   
Sbjct: 1206 VDVPNKRVALSVRPSKVLSASLPVEDPEIASIDRLKVNDIVRGFVRRVADIGLFVTLGHN 1265

Query: 1268 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1327
            + A V +S+LSD Y++  + EF I ++V GR+  V+  +K+V++TLK S      +  + 
Sbjct: 1266 VTAYVRVSDLSDSYLKEWQDEFQIDQIVRGRITLVDTEAKKVQMTLKQSALDPDYKPPLK 1325

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             L +L  G IV G++++VE +G F++I+ T NL GLCH SE++E  V +   +Y  G+ V
Sbjct: 1326 -LKDLKPGQIVTGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIV 1384

Query: 1387 KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA 1446
            K KILK+D +K +ISLG+K+SYF ND+D       E + E  EE G      +     + 
Sbjct: 1385 KAKILKIDLKKDQISLGLKASYFNNDSDEADSDMSEGASE--EESGDDELGGVALEPGID 1442

Query: 1447 VQDMDMESED---GGSLVLAQIESRASVPPLEVNLDDEQPDMDNG-ISQNQGHTDEAKTI 1502
             +D+  E ED   GG  +   +   A    ++V + D   D +   ++     T ++  I
Sbjct: 1443 DEDLSDEGEDIIMGGVDLSNSLVQSADSDNVDVLMADADGDQEGALVTSGFDWTGDSYEI 1502

Query: 1503 DEKNNRHA-------KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1555
             +  N  A         K+K+ R+ EI+      L+ + P+T D++ERL+   PNSS +W
Sbjct: 1503 QKGLNGAAFDSDDENMSKKKKRRKAEIQVDRTGDLDANGPQTVDDYERLLLGEPNSSLLW 1562

Query: 1556 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1615
            +KYMAF L + +V+KAR IAERAL++I++ ++ EK N+WVA  NLEN +G   ++++ +V
Sbjct: 1563 LKYMAFHLELGEVDKAREIAERALRSISLGQDTEKFNVWVAMLNLENTFGT--DDSLEEV 1620

Query: 1616 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQ 1674
            F+RA QY D +++H  +  ++ ++++ + ADE+    + KKF  S  ++L     L    
Sbjct: 1621 FKRACQYNDAQEIHEKMASIFIQSDKPEKADEIFQSALKKKFTQSPNLFLNYANFLFDTM 1680

Query: 1675 Q--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTD 1730
               +  +A++ RA+ SLP H H++  S+   LEF++  G  +RGR++FEG+LS +PKR D
Sbjct: 1681 AAPDRGRALLPRAMQSLPPHTHVELTSKFGQLEFRSPHGDVERGRTVFEGLLSSFPKRVD 1740

Query: 1731 LWSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYE 1776
            LW+I LD EI++GDVD +R LFER + +               L  K+ KF FKK+L +E
Sbjct: 1741 LWNILLDLEIKVGDVDQVRRLFERVLGIGRGVGADGSKAGMKKLKDKQAKFFFKKWLTFE 1800

Query: 1777 KSV--GEEERIEYVKQKAMEYVES 1798
            + +  G+++ ++ VK +A EYV+S
Sbjct: 1801 EKISNGDDKMVDEVKARAAEYVKS 1824



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 191/753 (25%), Positives = 325/753 (43%), Gaps = 69/753 (9%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN-------------- 47
           K+ G V+ +   ++ + LP  L G      A+  IL  +IE    N              
Sbjct: 172 KILGQVSSIGTHNISLALPNNLTGYVPWT-AVSKILKGKIEKLLKNGEDDENDEDTDDDD 230

Query: 48  -LLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTA 104
             L +   +GQ +   V    D+   +GK  ++I LS+       GLS   +     + A
Sbjct: 231 FDLKSYVRLGQYLRASVSSTTDNGHGLGKGKKRIELSVDPQEANAGLSKSDMIVDSTVQA 290

Query: 105 YVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVY 161
            V S+ED+G I+  GL      GF+    L  +  +  VK G +   VV   +    V+ 
Sbjct: 291 SVLSVEDYGLIMDLGLEDGETRGFMSSKELPPSVDLSQVKEGAVFLCVVTGHNAAGNVIK 350

Query: 162 LSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
           LS+D    +            +I+  +PG      +  +  NG+    +      VD  H
Sbjct: 351 LSADLQKAASAKKSHYLSSAPTINTFLPGTAAEILLTEVTPNGMTGKIMGMLDVVVDAVH 410

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVK----- 272
             +T  T +    Y    K   R++   P+     +G ++  ++L  +  P+ V      
Sbjct: 411 SGSTDETKDLTKKYRPATKAKGRLICTYPSDENPKLGFSILDHVL--KFSPTSVADPQDR 468

Query: 273 -----VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYK 324
                +  I  + KV+++D  LGL + + +T      +V IS V + +V  L   E  +K
Sbjct: 469 DDKPAISAIIPEVKVIKIDPTLGLYVQLGNT--KHYGFVHISRVKDGKVSSLSSAEGPFK 526

Query: 325 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-G 379
            GS    RI+GF  L+ L    L+    +       DV  G VVKGK+    +  D   G
Sbjct: 527 VGSHHEGRIIGFNALDNLFLLSLEKKVIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGING 586

Query: 380 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 437
            +V    G+  L P  HM++ ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ 
Sbjct: 587 LLVSLADGISGLVPGMHMADTKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSLLH 646

Query: 438 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 497
           S+ AI   Y +      + G    I+++G  ++FY  V+GF P SE+      +PS  + 
Sbjct: 647 SESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQHFS 706

Query: 498 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVV 552
           +GQVV    +S      R+ +S    P+ V++      + V  G LVSG V   + + ++
Sbjct: 707 IGQVVNVNALSVDAEQGRLVVS-CKDPSIVTDAYKSAFENVHPGLLVSGTVFEKSSDDLL 765

Query: 553 VYVIAKGYSKGTIPTEHLADHLEHATVMKSV-----IKPGYEFDQLLVLDNESSNLLL-- 605
           + +       G +     A+ L  A   KS      ++ G +   LL+L    ++ L+  
Sbjct: 766 LKL-----EDGGLIARLSAEQLSDAAPSKSAANLARLRVGQKLHDLLILSIRKTHRLIQV 820

Query: 606 SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 663
           S K SL  + ++  LP+    +  NS V G V NI + G FV FLG LTGF P+    D 
Sbjct: 821 SNKPSLKAALEKGTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDE 880

Query: 664 QRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
                   +   QS+  ++  ++ +  R  L++
Sbjct: 881 HLTKADFGFMRTQSISCSVSSIDQDAQRFILTM 913



 Score = 68.9 bits (167), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 144
            +SLE V+ G     +V ++ D    L+   PS  G LP  +++++  +  D+K     G 
Sbjct: 1054 ISLEKVKVGNSFLGFVNNMGDDCLWLNIS-PSVRGKLPIMDISDDLALAGDIKRTFPIGS 1112

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
             L+  V ++D  +  + L++     SK +T       I  L  GM++  +V  + E  V+
Sbjct: 1113 ALKVTVAAVDVDKNRLDLTAKHGASSKKLT-------ISDLSKGMILLGKVTKVTERQVL 1165

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD---PTSRAVGLTLNPY- 260
            +       G + +  + + +   N     N HK    R+  VD   P  R V L++ P  
Sbjct: 1166 VQLNESLVGAIGLLDMADDYSKIN---PANFHKNAVLRVCVVDVDVPNKR-VALSVRPSK 1221

Query: 261  LLHNRAPPSHVKVGDIYDQSKVVRVDRG-------LGLLLDIPSTPVSTPAYVTISDVAE 313
            +L    P    ++  I D+ KV  + RG       +GL + +     +  AYV +SD+++
Sbjct: 1222 VLSASLPVEDPEIASI-DRLKVNDIVRGFVRRVADIGLFVTLGH---NVTAYVRVSDLSD 1277

Query: 314  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKG 370
              +++ + +++    VR RI             LK SA +          D+KPG +V G
Sbjct: 1278 SYLKEWQDEFQIDQIVRGRITLVDTEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTG 1337

Query: 371  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 428
            KV  V+ FGA V   G   +  LC    M+E ++    K ++ G  +  ++L +  K+  
Sbjct: 1338 KVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQ 1397

Query: 429  VT 430
            ++
Sbjct: 1398 IS 1399



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 102/492 (20%), Positives = 189/492 (38%), Gaps = 79/492 (16%)

Query: 934  QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 991
            + ++ +I P L L ++ G   H G +HI+ V D K + + +    FK+G     RII  +
Sbjct: 480  EVKVIKIDPTLGLYVQLGNTKHYGFVHISRVKDGKVSSLSSAEGPFKVGSHHEGRIIGFN 539

Query: 992  NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV----DNEWALL 1047
               ++   FL  L  K        +  +      DV++G  V G + K+    D    LL
Sbjct: 540  ALDNL---FLLSLEKK--------VIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGINGLL 588

Query: 1048 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP----F 1103
             +S        +       ++LQ  +++F  G  VT  +LS+N EK+ LRL L+      
Sbjct: 589  -VSLADGISGLVPGMHMADTKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSLLHS 647

Query: 1104 QDGISDKTVDISNDNMQ--TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1161
            +  I     DI+  N    TF+   +              G V+Q    + G +  +E+ 
Sbjct: 648  ESAIWKDYRDIAPGNQSPGTFVSIQE-------------NGAVIQFYGAVRGFLPVSEMS 694

Query: 1162 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1221
               +            DP   +  GQ V    L +    +G   V            S  
Sbjct: 695  EAYIK-----------DPSQHFSIGQVVNVNALSVD-AEQGRLVV------------SCK 730

Query: 1222 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDG 1280
               + TD      +    E++ P ++V G V   +S    + L    L A++    LSD 
Sbjct: 731  DPSIVTDA-----YKSAFENVHPGLLVSGTVFEKSSDDLLLKLEDGGLIARLSAEQLSDA 785

Query: 1281 YVESPEKEFP-IGKLVAGR------VLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNL 1332
               +P K    + +L  G+      +LS+    + ++V+ K S      +  +     +L
Sbjct: 786  ---APSKSAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKAALEKGTLPAKFEDL 842

Query: 1333 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1392
             +   V G ++ +   G+F+      L G      + ++H+   +  +   + +   +  
Sbjct: 843  KLNSSVTGLVRNITDDGIFVEFLG-GLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSS 901

Query: 1393 VDKEKRRISLGM 1404
            +D++ +R  L M
Sbjct: 902  IDQDAQRFILTM 913


>gi|425767647|gb|EKV06215.1| RRNA biogenesis protein RRP5, putative [Penicillium digitatum Pd1]
 gi|425769195|gb|EKV07695.1| RRNA biogenesis protein RRP5, putative [Penicillium digitatum PHI26]
          Length = 2158

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 400/1527 (26%), Positives = 744/1527 (48%), Gaps = 189/1527 (12%)

Query: 364  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--- 420
            PG   +  +  V S G I +  G + A   L   S    +   KK+K+GA++  R++   
Sbjct: 372  PGTAAEILLTEVTSNGMIGKIMGMLDATVDLVQSSINGKIDLEKKYKIGAKIKGRIISTF 431

Query: 421  -GVKSKRITVTHKKTLVK----SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
               +  +++ +    ++K    ++    S  A A   +I    + K++ HG  V    G 
Sbjct: 432  PAAEPLKVSFSMLDHILKLSSDARGPGSSDDAPAISAIIPEVKVVKVD-HGLGVYARIGE 490

Query: 476  ---QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF----MMKPT 525
                GF   S L    ++   E S  + +  V + R++          LSF    + +P 
Sbjct: 491  TKHMGFVHMSRLSDGKVETIDESSGAFQLDAVHEARVIGYNSIDNLYILSFEKSVIEQPF 550

Query: 526  RVSEDDLVKLGSLVSGVVDVVTPNA----VVVYVIAKGYSKGTIPTEHLADHLEHATVMK 581
               ED  V +G++V G V+ +   A     ++  +A G + G +P+ H AD +      K
Sbjct: 551  LRVED--VNVGAIVKGKVEKLLIGADGMNGLIVNLADGIT-GLVPSMHFADTMLQFPEKK 607

Query: 582  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 640
               + G +   ++L ++ E   + L+ K SL+NS   +  D   I P++   G + N+  
Sbjct: 608  --FREGQKLSLRILSVNLEKRQIRLTLKKSLLNSESTIWKDYKDITPSAQSPGTIVNLQS 665

Query: 641  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
             G  V+F G + GF P S+  +    D ++ + +GQ V  + L V++  GR+ +S K   
Sbjct: 666  HGAVVQFYGEVRGFLPVSEMSEAYIQDPAQHFRLGQVVNVHALSVDASLGRLAVSCKDP- 724

Query: 701  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
              ST     +E F                      E    G ++ G V E ++  V++  
Sbjct: 725  --STFTEKYREAF----------------------ENLHPGHLVTGVVFEKSNDDVLLKL 760

Query: 761  EEHSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFID 810
            +E   V      H + G   +  S++             +L++ +A RL+ +S +     
Sbjct: 761  DESGLVARLDAAHLIDGPPSKQNSMLSKLRVGQKLNDLLVLNIQRAHRLIKVSSRASLKK 820

Query: 811  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 870
              ++ N   Q ++ +   E S   G       I  I  +   V  L      +    + D
Sbjct: 821  AAKQKNIPGQFEEVQ---EGSLVTGF------IRNITPDGVFVEFLGGLTGLLPKRLIED 871

Query: 871  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK------ 924
             N ++ P       Q+++  V ++       R +L +K +  T+ +  K AK+       
Sbjct: 872  ANLEQ-PHYGLSKAQTIVVNVQSV--DQDLKRFILSMKPVQATQAAPKKVAKQTDETVVN 928

Query: 925  ---------SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NL 973
                     S +  G +V+ ++  IK  ++ ++      GRI ++E+ DD  ++ +    
Sbjct: 929  PIDDSIESMSDFTFGRIVECKVVSIKATQINVQLADNVQGRIDVSEIFDDWKDIKDRKQP 988

Query: 974  FSNFKIGQTVTARII-----AKSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFE 1023
               FK  QT++ARI+     A+++K         K  ++ELS+KPS +  +   + L  E
Sbjct: 989  LRFFKAKQTLSARILLGVHDARNHKFLPISHRTGKYPVFELSLKPSYVKATN-PAPLNME 1047

Query: 1024 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1083
            +  V +G    G+V  V ++   + +S +++ +L  +D++ + S L E ++ F IG A+ 
Sbjct: 1048 Q--VQVGSSWVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLTEIEKNFPIGSALK 1105

Query: 1084 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1143
              V ++N EK  L L  +   D ++   + +           G ++ GRI+K+      L
Sbjct: 1106 VQVTAVNTEKGHLNLSAKQGYDKLTFGDISV-----------GMVLPGRITKVTER--QL 1152

Query: 1144 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1203
            ++Q+G  L G V+ T++ +          D  + +P + +++ + ++  V+ + ++ +  
Sbjct: 1153 IMQLGESLVGAVNLTDIAD----------DYSKANP-TVHNKNEVLRACVIAVDKSNK-- 1199

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
              + LSLR S           +S+ +    + +  ++D+  N I++G+V+ VT  G F+ 
Sbjct: 1200 -KIALSLRPS---------KVMSSSLPVQDREISSLKDVKLNDIIRGFVRRVTDSGLFVA 1249

Query: 1264 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1323
            +S  + A V +S+LSD Y++  +  F   +LV G+V  V+    +++++LK S      +
Sbjct: 1250 VSNDITAYVRVSDLSDSYLKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFK 1309

Query: 1324 SEINNLSNLHVGDIVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDHVDNIETIYRA 1382
            + I  L +L VG IV G++++VE +G FI I+ ++N+ GLCH SE++E  V++   +Y  
Sbjct: 1310 APIA-LKDLKVGQIVTGKVRKVEEFGAFIVIDGSSNISGLCHRSEMAEKRVEDARKLYDE 1368

Query: 1383 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE--EVGSYNRSSLL 1440
            G+ VK K++K+D E ++IS  +K+S+F+++ +      +  S + +   E+G  +     
Sbjct: 1369 GDAVKAKVIKIDLESKKISFSLKASHFQDEEEMDSEDEDSMSIDGLGGVELGEDDSEDKD 1428

Query: 1441 ENSS-VAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEA 1499
            ++   +   D++  SED  S     ++    VP        ++P  + G+  +       
Sbjct: 1429 DDDESMGGVDVEDSSEDDES-----VDGDEDVPM-------QKPSKNGGLGSSGFDWSGT 1476

Query: 1500 KTID-----EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFV 1554
              ID     + ++  + KK+K+ R+ EI+      L+ + P++  +FERL+   P+SS +
Sbjct: 1477 AQIDAAARSDSDDEGSNKKKKKSRKAEIQVDRTGDLDANGPQSVADFERLLLGEPDSSLL 1536

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W++YMAF L + + EKAR+IAERAL+TI + ++ EKLNIWVA  N+EN YG+  ++++ +
Sbjct: 1537 WLQYMAFQLELGETEKARAIAERALRTITMGQDAEKLNIWVALLNMENTYGD--DDSLEE 1594

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLK 1672
            VF+RA QY DP++++  ++ +Y ++ +N+ A +L Y  +KK     S K +      L  
Sbjct: 1595 VFKRACQYNDPQEIYERMISIYIQSGKNQKASDLFYDALKKKVSSQSPKFFYNYASFLFD 1654

Query: 1673 QQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKR 1728
                 +  +A++ RAL SLP H H++  S+ A LEF+  NG  +RGR++FEG+LS +PKR
Sbjct: 1655 TMASPDRARALLPRALQSLPAHTHVETTSKFAQLEFRSANGDVERGRTIFEGLLSSFPKR 1714

Query: 1729 TDLWSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLE 1774
             DLW++ LD EI++GD + +R LFER + L               L PK+ +FLFKK+L 
Sbjct: 1715 IDLWNVLLDLEIKVGDAEQVRRLFERVLGLQGGKKGPVSVDASKKLKPKQARFLFKKWLS 1774

Query: 1775 YEKSV---GEEERIEYVKQKAMEYVES 1798
            +E+ +   G+E+ +E VK +A+ YV+S
Sbjct: 1775 FEEGLATDGDEKMVEEVKARAVTYVKS 1801



 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 193/752 (25%), Positives = 334/752 (44%), Gaps = 71/752 (9%)

Query: 5   GVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL------------L 49
           G V+ +N  D+ + LP  L G   L   +  L+  L+  +    ++             L
Sbjct: 167 GQVSSINAHDIGLSLPNNLTGYVPLTSVSKGLEDRLEKMLNDEGEDDDAEDSSDDESFDL 226

Query: 50  PTIFHVGQLVSCIVLQLD---DDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 106
              F++GQ +   V+      DD K   K++I LS+       G S   +     + A V
Sbjct: 227 KDHFYLGQYLRAFVVSTGSNPDDPKAKSKKRIELSVDPRQTNTGFSKSDLVVNSAVQASV 286

Query: 107 KSIEDHGYILHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLS 163
            S+EDHG ++  G+      GF+       N     +K G +   +V   + +  V+ LS
Sbjct: 287 VSVEDHGVVMDLGIEGSELKGFMSSKETDPNVDYSSIKEGSVFLCMVTGQNASGNVIKLS 346

Query: 164 SDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           S+  T +     +      +I+  +PG      +  +  NG++   +     TVD+    
Sbjct: 347 SNFQTSASIKKSNYLSSAPTINTFLPGTAAEILLTEVTSNGMIGKIMGMLDATVDLVQ-- 404

Query: 222 NTFPTTNWKND----YNQHKKVNARILFVDPTSRA--VGLTLNPYLLH----NRAPPSH- 270
               + N K D    Y    K+  RI+   P +    V  ++  ++L      R P S  
Sbjct: 405 ---SSINGKIDLEKKYKIGAKIKGRIISTFPAAEPLKVSFSMLDHILKLSSDARGPGSSD 461

Query: 271 --VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKE 325
               +  I  + KVV+VD GLG+   I  T      +V +S +++ +V  +++    ++ 
Sbjct: 462 DAPAISAIIPEVKVVKVDHGLGVYARIGET--KHMGFVHMSRLSDGKVETIDESSGAFQL 519

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GA 380
            +    R++G+  ++ L     + S  E       DV  G +VKGKV    I  D   G 
Sbjct: 520 DAVHEARVIGYNSIDNLYILSFEKSVIEQPFLRVEDVNVGAIVKGKVEKLLIGADGMNGL 579

Query: 381 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS 438
           IV    G+  L P  H ++  +  P KKF+ G +L  R+L V  + ++I +T KK+L+ S
Sbjct: 580 IVNLADGITGLVPSMHFADTMLQFPEKKFREGQKLSLRILSVNLEKRQIRLTLKKSLLNS 639

Query: 439 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
           +  I   Y + T    + G I  ++ HG  V+FY  V+GF P SE+      +P+  + +
Sbjct: 640 ESTIWKDYKDITPSAQSPGTIVNLQSHGAVVQFYGEVRGFLPVSEMSEAYIQDPAQHFRL 699

Query: 499 GQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVV 553
           GQVV    +S   +  R+ +S    P+  +E      + +  G LV+GVV   + + V++
Sbjct: 700 GQVVNVHALSVDASLGRLAVS-CKDPSTFTEKYREAFENLHPGHLVTGVVFEKSNDDVLL 758

Query: 554 YVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYS 610
            +   G     +   HL D        M S ++ G + + LLVL+ + ++ L+  S++ S
Sbjct: 759 KLDESGLV-ARLDAAHLIDGPPSKQNSMLSKLRVGQKLNDLLVLNIQRAHRLIKVSSRAS 817

Query: 611 LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
           L  +A+Q  +P     +   S+V G++ NI   G FV FLG LTG  P+    D   A+L
Sbjct: 818 LKKAAKQKNIPGQFEEVQEGSLVTGFIRNITPDGVFVEFLGGLTGLLPKRLIED---ANL 874

Query: 669 SKTYY---VGQSVRSNILDVNSETGRITLSLK 697
            + +Y     Q++  N+  V+ +  R  LS+K
Sbjct: 875 EQPHYGLSKAQTIVVNVQSVDQDLKRFILSMK 906



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 161/368 (43%), Gaps = 44/368 (11%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSC 61
            W G V  V +  L + L   +RG  R  DA D + L  EIE N        F +G  +  
Sbjct: 1055 WVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLTEIEKN--------FPIGSALKV 1106

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 121
             V  ++ +K         L+L     Y  L+   +  GMVL   +  + +   I+  G  
Sbjct: 1107 QVTAVNTEKGH-------LNLSAKQGYDKLTFGDISVGMVLPGRITKVTERQLIMQLG-E 1158

Query: 122  SFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVT 174
            S  G +   ++A++      P +     +L+  V ++D++ K + LS  P  V  S    
Sbjct: 1159 SLVGAVNLTDIADDYS-KANPTVHNKNEVLRACVIAVDKSNKKIALSLRPSKVMSSSLPV 1217

Query: 175  KD-----LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 229
            +D     LK + ++ ++ G      V+ + ++G+ ++     T  V +  L +++    W
Sbjct: 1218 QDREISSLKDVKLNDIIRGF-----VRRVTDSGLFVAVSNDITAYVRVSDLSDSY-LKEW 1271

Query: 230  KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRV 285
            K+ +   + V  ++ FVD     + L+L   +L  + +AP +   +KVG I    KV +V
Sbjct: 1272 KDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPIALKDLKVGQIV-TGKVRKV 1330

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
            +     ++   S+ +S   +   S++AE+ V    K Y EG  V+ +++         + 
Sbjct: 1331 EEFGAFIVIDGSSNISGLCHR--SEMAEKRVEDARKLYDEGDAVKAKVIKIDLESKKISF 1388

Query: 346  ILKASAFE 353
             LKAS F+
Sbjct: 1389 SLKASHFQ 1396


>gi|19075390|ref|NP_587890.1| U3 snoRNP-associated protein Rrp5 (predicted) [Schizosaccharomyces
            pombe 972h-]
 gi|74582568|sp|O74835.1|RRP5_SCHPO RecName: Full=rRNA biogenesis protein rrp5; AltName: Full=Ribosomal
            RNA-processing protein 5; AltName: Full=U3 small
            nucleolar RNA-associated protein rrp5; Short=U3
            snoRNA-associated protein rrp5
 gi|3650378|emb|CAA21087.1| U3 snoRNP-associated protein Rrp5 (predicted) [Schizosaccharomyces
            pombe]
          Length = 1690

 Score =  438 bits (1126), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 390/1393 (27%), Positives = 655/1393 (47%), Gaps = 198/1393 (14%)

Query: 475  VQGFAPRSEL------GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-----K 523
            + GFA  S L      G+ P   P   Y V    + RI++         LSF       +
Sbjct: 424  ISGFAHISRLSDKKVAGISPNSGP---YKVDSTHEARIINYSYVDNLYILSFQQSVLNQQ 480

Query: 524  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATV 579
              R+ +   +++G  V G +  + P  +VV  I++G + G +P+ H+AD      E    
Sbjct: 481  FLRIED---IEVGQFVDGTIAKLIPQGIVV-TISEGIN-GLVPSTHMADIALQFPERRFK 535

Query: 580  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 639
            + S +K      ++L  +     +LL+ K SL+N+   L  D     P +   G +  I 
Sbjct: 536  VGSSVKC-----RVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIF 590

Query: 640  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            E G  V F   +  F P S+  +    D  + + VGQ++   I+  + E  ++ +  ++ 
Sbjct: 591  EDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQ 650

Query: 700  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 759
               S DA                         L+  E    GSV+ G V +  +  V+V 
Sbjct: 651  ---SWDAK-----------------------RLERFENIKAGSVLSGIVLQKTEDSVIVD 684

Query: 760  FEEHSDVYGFITHHQLAGATVESGSVI-----------QAAILDVAKAERLVDLSLKTVF 808
              +   V G IT  QL    +   S +           +  +L    +++L+ LSLK   
Sbjct: 685  LGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSL 742

Query: 809  IDRFREANSNRQAQKKKRKREASKDLGV---HQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
            ++  +E   NR        +E  K  G      T    VE    + LV  +P+   S  Y
Sbjct: 743  VEAAKE---NRMPINITDLKEGIKYFGFVRNATTFGVFVEFC--DGLVALVPKAYISEEY 797

Query: 866  ASVSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSSTAGRLLLLLKAISET 913
              V        P   +   QSV    +++            P +    + +  +++  + 
Sbjct: 798  VPV--------PSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDI 849

Query: 914  ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 971
            +    +  KK   Y  G +  A +T  K  +L +      HGR+ ++EV D+   +V+  
Sbjct: 850  DNPVDETIKKTYDYVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPN 909

Query: 972  NLFSNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLL 1021
                 F  G  +  R++   +  + K          K FL ELS++PS+L +     K  
Sbjct: 910  KPLKRFHKGDKIRVRVLGIHDSRNHKFLPISHRVSPKQFL-ELSVRPSILNMEPFSMK-- 966

Query: 1022 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1081
              E     G  VTG+V  V  E   ++++  +  ++ ILD   +  EL   Q+ F +GKA
Sbjct: 967  --EPQFKKGDEVTGFVNNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKA 1024

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
            +  +V  +N E  +    + P Q G  + T              G  + G+++ +     
Sbjct: 1025 IKCYV--VNAEDSITLSAIGPLQ-GFENLT-------------PGSRLVGKVTNV--NEA 1066

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
            G ++Q+  H+ GRV   ++           +D+    P + +     V   VL +    R
Sbjct: 1067 GAILQLPGHMSGRVSRIDM-----------FDDYDILPETKFTRNNLVGVCVLSVDVPNR 1115

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
                           +S+ NS   S  V+   K +  ++DL    I +G+V NV ++G F
Sbjct: 1116 KV------------ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQGLF 1163

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            + +   L A+V +  L D +++  +  F + +LV G ++ ++  SKR+E++LK S  +  
Sbjct: 1164 VTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQS--KIK 1221

Query: 1322 SQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETI 1379
              SEI    +++ VG  + G + +V  YG+ I I+ T N+VGLCH SE+++  V NI  +
Sbjct: 1222 DSSEITKTFADIAVGSNLDGTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKL 1281

Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKSSYFKN--------DADNLQMSSEEESDEAIEEV 1431
            Y +G+KV+  +L VD EKRRI+LG+KSSYF +        + ++++M SE++SD +  EV
Sbjct: 1282 YSSGDKVRAHVLDVDSEKRRIALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEV 1341

Query: 1432 GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD--MDNGI 1489
            GS +               D++SE+  +L  A  E            ++E+P     NG 
Sbjct: 1342 GSKD---------------DVQSEEVENLESAGDED-----------EEEEPSALQANGF 1375

Query: 1490 SQNQGHT--DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS 1547
                G T  D+     E +     ++ K ++ +  R  +E     + P T  +FER + S
Sbjct: 1376 DWTDGSTVFDKLADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEIPSTAADFERQLLS 1435

Query: 1548 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1607
            SPNSS +WI YMA+ L++ ++++AR + +RAL TIN REE+EKLN+W+A  NLE  YG  
Sbjct: 1436 SPNSSLLWISYMAYHLNLNELQEAREVGKRALSTINYREEDEKLNVWMALLNLEVAYGT- 1494

Query: 1608 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRV 1667
             E+++ +VF+ A  YCD   V+  L G+  +  +  LADE +  M+K FK    VW++  
Sbjct: 1495 -EDSLKEVFKEACAYCDALIVYEKLCGILIKGGKVDLADEYMQLMLKNFKQVPSVWIQYA 1553

Query: 1668 QRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1726
              LL   + E    +++R+L SLP+ +H+  I + AILEFKNG  +RGR++FEG+LS YP
Sbjct: 1554 TFLLNNDKAEKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPERGRTIFEGLLSSYP 1613

Query: 1727 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1786
            KR DLW++ +D E++  D  ++R LF+R ++L+L  KK KF FKK+L YEK++G++E  E
Sbjct: 1614 KRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKWLAYEKNIGDDEGAE 1673

Query: 1787 YVKQKAMEYVEST 1799
             VK++A+EYV  +
Sbjct: 1674 QVKRRAIEYVSES 1686



 Score =  208 bits (530), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 205/735 (27%), Positives = 340/735 (46%), Gaps = 56/735 (7%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDNEIEAN-----EDNL-- 48
           + G +A++N  DL + LP  L G         + +D LD I DN  E N     ED L  
Sbjct: 112 ILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSI-DNHAEDNAATEEEDGLNQ 170

Query: 49  ---LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ--EGMVL 102
              L  ++ VGQ V   V  L  ++  + GKR I LSL+      G + E      G ++
Sbjct: 171 IPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDA-NGSAPEAADFVAGSMI 229

Query: 103 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 162
            A V SIEDHG +   G+ ++TGFL + ++  N    V+   LL  V+   DR   + +L
Sbjct: 230 QAVVSSIEDHGIVFDIGINNYTGFLSKKHI--NDFPFVEGQSLLCSVISKEDR---IFHL 284

Query: 163 SSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           S     ++   TK L+ + S+  ++PG  ++  V  I E+GV+  ++     T DI+H  
Sbjct: 285 S-----LTATSTKALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMGVVDVTSDIYH-S 338

Query: 222 NTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVG-----LTLNPYLLHNRAPPSHVKV 273
           +     + ++ +   K V AR+LFV   DP   AV      LT N +   N   P  + +
Sbjct: 339 SPVKGEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSFLPHVLTFN-FATPNTPHPDQLDI 397

Query: 274 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVR 332
           G I + +KV  V   LG+  D+    +S  A+++ +SD     +      YK  S    R
Sbjct: 398 GFIVNAAKVTYVSSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNSGPYKVDSTHEAR 457

Query: 333 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 392
           I+ + +++ L     + S          D++ G  V G +  +   G +V    G+  L 
Sbjct: 458 IINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLV 517

Query: 393 PLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEAT 450
           P  HM++  +  P ++FKVG+ +  RVL   V  KR+ +T KK+L+ + L ++  Y +AT
Sbjct: 518 PSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQAT 577

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
               T G + +I + G  V FYN V+ F P SE+      +    + VGQ +   I+S  
Sbjct: 578 PGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCD 637

Query: 511 PASRRINLSFMMK---PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
           P +R++ +    +     R+   + +K GS++SG+V   T ++V+V +  K    G I  
Sbjct: 638 PENRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDK--VTGVITL 695

Query: 568 EHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ--LPSDA 622
             L D  L   + + + ++   +  ++LVL  ++S  L  LS K SL+ +A++  +P + 
Sbjct: 696 GQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRMPINI 755

Query: 623 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
           + +       G+V N    G FV F   L    P++   +      S  Y   QSV    
Sbjct: 756 TDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAYISEEYVPVPSAVYKPQQSVTCVC 815

Query: 683 LDVNSETGRITLSLK 697
           L V     +  +S K
Sbjct: 816 LSVELSQEKAFMSFK 830



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 192/898 (21%), Positives = 342/898 (38%), Gaps = 174/898 (19%)

Query: 5    GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 64
            G +A++  + +V+ +  G+ GL  +    D  L               F VG  V C VL
Sbjct: 495  GTIAKLIPQGIVVTISEGINGLVPSTHMADIAL---------QFPERRFKVGSSVKCRVL 545

Query: 65   QLDDDKKEIGKRKIWLSLRLSLLYKGLSL----ETVQEGMVLTAYVKSIEDHGYILHFGL 120
              +     + ++++ L+L+ SLL   L L    E    G      +  I + G I+ F  
Sbjct: 546  STN-----VLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIFEDGAIVEF-Y 599

Query: 121  PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV-----TK 175
             S   FLP + ++E    D +           + +T  V  +S DP+     V     + 
Sbjct: 600  NSVRAFLPVSEMSEAYIRDAREHF-------KVGQTLSVTIVSCDPENRKMRVGCREQSW 652

Query: 176  DLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
            D K +   + +  G ++S  V    E+ V++      TG + +  L +         D N
Sbjct: 653  DAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLCD--------GDLN 704

Query: 235  QHKKVNAR-----------ILFVDPTSRAVGLTLNPYLLH----NRAPPSHVKVGDIYDQ 279
            +  KV  +           +L  D + + + L+L   L+     NR P   + + D+ + 
Sbjct: 705  KCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRMP---INITDLKEG 761

Query: 280  SK---VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL-- 334
             K    VR     G+ ++     V   A V  + ++EE V      YK    V    L  
Sbjct: 762  IKYFGFVRNATTFGVFVEFCDGLV---ALVPKAYISEEYVPVPSAVYKPQQSVTCVCLSV 818

Query: 335  ------GFRHLEGLATGILKASAF------------EGLVFTHSDVKPGMVVKGKVIAVD 376
                   F   + LA    KA  F            E +  T+ D   G +    V +  
Sbjct: 819  ELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTY-DYVAGKITWAVVTSAK 877

Query: 377  SFGAIVQFPGGVKALCPLPHMSEF--EIV---KPGKKFKVGAELVFRVLGVKSKR----I 427
            +    V     V     +  + +   EIV   KP K+F  G ++  RVLG+   R    +
Sbjct: 878  ASQLNVDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKIRVRVLGIHDSRNHKFL 937

Query: 428  TVTHK-------KTLVKSKLAILSSYAEATDRLI----THGWITKIEKHGCFVRFYNGVQ 476
             ++H+       +  V+  +  +  ++    +        G++  + K   +V     V 
Sbjct: 938  PISHRVSPKQFLELSVRPSILNMEPFSMKEPQFKKGDEVTGFVNNVSKECVWVSLTPSVN 997

Query: 477  GFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 533
            G  P  +L  D   E +S+   + +G+ +KC +++   A   I LS  + P +  E +L 
Sbjct: 998  GRIPILDLTTDVK-ELNSLQKHFFLGKAIKCYVVN---AEDSITLS-AIGPLQGFE-NLT 1051

Query: 534  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ- 592
                LV  V +V    A++      G+  G +    + D  +        I P  +F + 
Sbjct: 1052 PGSRLVGKVTNVNEAGAILQL---PGHMSGRVSRIDMFDDYD--------ILPETKFTRN 1100

Query: 593  ------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV--------VHGYVCNI 638
                  +L +D  +  + LSA+ S     Q  P +      NSV          G+VCN+
Sbjct: 1101 NLVGVCVLSVDVPNRKVALSARNS---RTQSQPVEIKDKEINSVDDLKIGDICRGFVCNV 1157

Query: 639  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
               G FV     L       +  D    D    ++V Q V+ +I+ +++++ RI +SLKQ
Sbjct: 1158 ANQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQ 1217

Query: 699  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 758
            S     D+S + + F                          +GS ++G V +  D+GV++
Sbjct: 1218 SKIK--DSSEITKTF----------------------ADIAVGSNLDGTVVKVGDYGVLI 1253

Query: 759  SFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLKTVFI 809
              +   ++ G     ++A A V        SG  ++A +LDV   +R + L LK+ + 
Sbjct: 1254 RIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLKSSYF 1311



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 117/517 (22%), Positives = 194/517 (37%), Gaps = 101/517 (19%)

Query: 624  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP----------RSKAVDG---------- 663
            +I P S++ G +  I      V     LTG+ P          R  ++D           
Sbjct: 105  NITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNAATEE 164

Query: 664  -----QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 718
                 Q  DL   Y VGQ VR ++  + SE    T                + H  L   
Sbjct: 165  EDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKT---------------GKRHIELS-- 207

Query: 719  IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY-GFITHHQLAG 777
               L+    NGS  +  + F+ GS+I+  V    D G+V  F+   + Y GF++   +  
Sbjct: 208  ---LKPQDANGSAPEAAD-FVAGSMIQAVVSSIEDHGIV--FDIGINNYTGFLSKKHIND 261

Query: 778  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
                 G  +  ++  ++K +R+  LSL                         ++K L V 
Sbjct: 262  FPFVEGQSLLCSV--ISKEDRIFHLSLTAT----------------------STKALEVM 297

Query: 838  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF---PQK------QFLNGQSVI 888
             +V AI+     N LV  + E      Y  V D  +  +   P K      +F   +SV 
Sbjct: 298  PSVQAILPGDYINVLVTDIKESGVIAKYMGVVDVTSDIYHSSPVKGEDLEDKFQLAKSVP 357

Query: 889  ATVM-ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL 947
            A V+  +P       +  L   +  T   ++         D+G +V A         L +
Sbjct: 358  ARVLFVIPGDPPKIAVSFLPHVL--TFNFATPNTPHPDQLDIGFIVNAAKVTYVSSSLGV 415

Query: 948  KFGIG---FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1004
               +G     G  HI+ ++D K   +      +K+  T  ARII  S   +     L+ L
Sbjct: 416  FCDVGVPEISGFAHISRLSDKKVAGISPNSGPYKVDSTHEARIINYSYVDN-----LYIL 470

Query: 1005 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1064
            S + S+L      ++      D+ +GQ V G + K+  +  ++TIS  +     +  +  
Sbjct: 471  SFQQSVL------NQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTISEGING--LVPSTHM 522

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1101
                LQ  +RRF +G +V   VLS N  +K + L L+
Sbjct: 523  ADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLK 559


>gi|119482079|ref|XP_001261068.1| rRNA biogenesis protein RRP5, putative [Neosartorya fischeri NRRL
            181]
 gi|119409222|gb|EAW19171.1| rRNA biogenesis protein RRP5, putative [Neosartorya fischeri NRRL
            181]
          Length = 1819

 Score =  435 bits (1119), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 378/1350 (28%), Positives = 661/1350 (48%), Gaps = 172/1350 (12%)

Query: 533  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGAVVKGKIEKLLIGPAGVDGLIVTLADGIT-GLVPSMHFADTALQFPEKK--FREGL 610

Query: 589  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
                ++L ++ +   + L+ K SL+NS   +  D   I P S   G + NI   G  V+F
Sbjct: 611  TITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQF 670

Query: 648  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVSCKDP------ST 724

Query: 708  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII-GSVIEGKVHES----NDFGVVVSFEE 762
            F + +    EKI                 G ++ G+V E  V +     ++FG++   + 
Sbjct: 725  FTETYKKAFEKIQ---------------PGLLVTGTVFEKSVDDVLLKLDEFGLIARLDL 769

Query: 763  HSDVYGFITHHQLAGATVESGSVIQAA-ILDVAKAERLVDLSLKTVFIDRFREANSNRQA 821
               V G  +    A + +  G  +    +LD+ +A RL+ +S +           S ++A
Sbjct: 770  AHVVDGSESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKA 819

Query: 822  QKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 880
             K+       +D+     V   V  I  +   +  L      +    ++D N  K P   
Sbjct: 820  AKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEFLGGITGLVPKRLLADENASK-PDYG 878

Query: 881  FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK---------------- 924
             +  Q V ATV ++ +     R +L +K  SE  ++  KR   K                
Sbjct: 879  MVKSQLVTATVHSIDTDFQ--RFILSMKP-SEATSAGPKRPAPKPTLSNDVVSNAVDESI 935

Query: 925  ---SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKI 979
               S +  G  V+ ++  +K  ++ ++      GRI ++EV D   ++ +       F+ 
Sbjct: 936  ESMSDFTFGRTVKCKVVSVKATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFRP 995

Query: 980  GQTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIG 1030
             Q ++ARI+    A+S+K  P   +S    ++ELS+KPS L  +   S L  E+  V IG
Sbjct: 996  KQIISARILGIHDARSHKFLPISHRSGKLPVFELSVKPSFLQAAN-PSPLNLEQ--VQIG 1052

Query: 1031 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1090
                G++  V ++   + +S +++ +L  +D++ + S   + ++ F IG A+  HV +++
Sbjct: 1053 STWVGFINNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAAVD 1112

Query: 1091 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1150
             EK  L L  +     +S + + +           G I+ GR++K+      +++Q+   
Sbjct: 1113 TEKGRLDLTAKQGSSKLSFEDISV-----------GMILPGRVTKVTEK--QVIMQLSDT 1159

Query: 1151 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1210
            + G V+  +L +          D  + +P + Y +   ++  V+ + +  +    + LSL
Sbjct: 1160 VVGAVNLIDLAD----------DYSKANP-TVYHKNDVLRACVVGVDKANK---KISLSL 1205

Query: 1211 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1270
            R S           LS+ +      +  ++ L  N +V+G+VK V   G F+ L   + A
Sbjct: 1206 RPS---------KVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTA 1256

Query: 1271 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1330
             V +S+LSD Y++  +  F + +LV GRV  V+P   R++++LK S      ++ I  + 
Sbjct: 1257 YVRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPIT-MH 1315

Query: 1331 NLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1389
            +L VG +V G++++VE +G FI I+ + N+ GLCH SE+++  VD+  T+Y  G+ VK K
Sbjct: 1316 DLKVGQVVTGKVRKVEEFGAFIVIDRSANVSGLCHRSEMADKRVDDARTLYEEGDVVKAK 1375

Query: 1390 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1449
            I+KVD+E  +IS  +K+S+FK+         +EE +   +E G  N  SL     V V+ 
Sbjct: 1376 IIKVDRESGKISFSLKASHFKD--------HDEEDESGSDEDGDSNGVSLDGMGGVDVEG 1427

Query: 1450 MDMESED------GGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN--------QGH 1495
             D    D      GG  +    ES       +V +       D G+           +  
Sbjct: 1428 SDDSENDDDDVSMGGVDLEEDSESDGEESDEDVEMTSAPVKRDGGLGATGFDWSGNVKDD 1487

Query: 1496 TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1555
             DEA   D  +  +++KK+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W
Sbjct: 1488 EDEAMQSDSDDEDNSRKKKKKSRKPEIQVDRTGELDANGPQSVADYERLLLGEPDSSLLW 1547

Query: 1556 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1615
            +KYMAF L + +VEKA+ IAERAL+TI+I ++ EKLNIWVA  NLEN YGN  ++++ +V
Sbjct: 1548 LKYMAFQLELGEVEKAKEIAERALRTISIGQDTEKLNIWVALLNLENTYGN--DDSLDEV 1605

Query: 1616 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQ 1674
            F+RA QY D ++++  +  +Y ++ +N  ADEL    + KK  ++ K +L     L    
Sbjct: 1606 FKRACQYNDTQEIYDRMTSIYIQSGKNDKADELFQTALKKKISNTPKFFLNYASFLFDSM 1665

Query: 1675 Q--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTD 1730
               +  +A++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR D
Sbjct: 1666 AAPDRARALLPRALQSLPSHTHVELTSKFGQLEFRSPNGDVERGRTVFEGLLSSFPKRVD 1725

Query: 1731 LWSIYLDQEIRLGDVDLIRGLFERAISL-----------------SLPPKKMKFLFKKYL 1773
            LW++ LD EI+ GD + +R LFER + +                  L PK+ KF FKK+L
Sbjct: 1726 LWNVLLDLEIKNGDAEQVRRLFERVLGIRDAKKGAAAAAPMDASKKLRPKQAKFFFKKWL 1785

Query: 1774 EYEKSV-----GEEERIEYVKQKAMEYVES 1798
             +E+ +     G+E+ +E +K KA +YV+S
Sbjct: 1786 SFEEKLAAANGGDEKMVEEIKAKAADYVKS 1815



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 175/691 (25%), Positives = 306/691 (44%), Gaps = 45/691 (6%)

Query: 53  FHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
           F++GQ +   V+ +     D     K++I LS+       GLS   ++    + A V S+
Sbjct: 227 FYLGQYLRASVVSVGSNAADAPSKNKKRIELSVDPRQTNAGLSKSDLEVNTAIQASVVSV 286

Query: 110 EDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDP 166
           EDHG ++  G+      GF+ +  +   +    +K G +   +V   +    VV LS++ 
Sbjct: 287 EDHGLVMDLGIEGADVKGFMSKKEIDPKTDYSSIKEGSVFLCMVTGQNANGSVVKLSANL 346

Query: 167 DTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
            +              +I+  +PG      +  +  +G++   +     TVD+       
Sbjct: 347 QSAGSIKKSHYLSTASTINSFLPGTAAEILLTEVSSSGLIGKIMGMLDATVDLVQSGGNS 406

Query: 225 PTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGD 275
              +    +    K+  RI+   P S    VG ++  ++L        P +      +  
Sbjct: 407 GKDDLTKKFQLGAKIKGRIVCTFPASEPFKVGFSILDHVLKFATEGHGPGTSEDAPAISA 466

Query: 276 IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVR 332
           I  ++KVV VD G+G+ + + ST      +V +S +A+ +V  +  +   ++  S    R
Sbjct: 467 IIPEAKVVMVDPGMGVYVQMGST--KHMGFVHVSRLADGKVEHIAPEHGPFRIDSVHEAR 524

Query: 333 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV-------IAVDSFGAIVQFP 385
           ++G+   +GL     +    E       DV  G VVKGK+         VD  G IV   
Sbjct: 525 VVGYSSFDGLYLLSFERKVIEQPFLRLEDVTVGAVVKGKIEKLLIGPAGVD--GLIVTLA 582

Query: 386 GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAIL 443
            G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L+ S+ AI 
Sbjct: 583 DGITGLVPSMHFADTALQFPEKKFREGLTITARILSVNLQKRQIRLTLKKSLLNSESAIW 642

Query: 444 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 503
             Y +      + G I  I+ HG  V+FY  V+GF P SE+      +PS  +  GQVV 
Sbjct: 643 KDYQDIVPGSQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVN 702

Query: 504 CRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
              +S  PA  ++ +S    P+  +E      + ++ G LV+G V   + + V++ +   
Sbjct: 703 VHALSVDPALGKLAVS-CKDPSTFTETYKKAFEKIQPGLLVTGTVFEKSVDDVLLKLDEF 761

Query: 559 GYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSA 615
           G     +   H+ D  E   +   S I+ G + + LLVLD + +  L+  SA+ SL  +A
Sbjct: 762 GLI-ARLDLAHVVDGSESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAA 820

Query: 616 QQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 673
           +Q  LP+    I   + V G+V NI   G F+ FLG +TG  P+    D   +       
Sbjct: 821 KQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEFLGGITGLVPKRLLADENASKPDYGMV 880

Query: 674 VGQSVRSNILDVNSETGRITLSLKQSCCSST 704
             Q V + +  ++++  R  LS+K S  +S 
Sbjct: 881 KSQLVTATVHSIDTDFQRFILSMKPSEATSA 911



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 143/315 (45%), Gaps = 39/315 (12%)

Query: 407  KKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
            K F +G+ L   V  V ++  R+ +T K+    SKL    S+ + +  +I  G +TK+ +
Sbjct: 1096 KHFPIGSALKVHVAAVDTEKGRLDLTAKQG--SSKL----SFEDISVGMILPGRVTKVTE 1149

Query: 465  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 524
                ++  + V G     +L  D      ++YH   V++  ++    A+++I+LS  ++P
Sbjct: 1150 KQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANKKISLS--LRP 1207

Query: 525  TRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLA 571
            ++V    L            +K+  +V G V  V  + + V +   G+     +    L+
Sbjct: 1208 SKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTL---GHDVTAYVRVSDLS 1264

Query: 572  DHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 626
            D     + +K   K  ++ DQL+     V+D E   L +S K S+++   + P     + 
Sbjct: 1265 D-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLK 1318

Query: 627  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
               VV G V  + E G F+       ++G   RS+  D +  D    Y  G  V++ I+ 
Sbjct: 1319 VGQVVTGKVRKVEEFGAFIVIDRSANVSGLCHRSEMADKRVDDARTLYEEGDVVKAKIIK 1378

Query: 685  VNSETGRITLSLKQS 699
            V+ E+G+I+ SLK S
Sbjct: 1379 VDRESGKISFSLKAS 1393



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 170/386 (44%), Gaps = 59/386 (15%)

Query: 52   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 98
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 992  FFRPKQIISARILGIHDARSHKFLPISHRSGKLPVFELSVKPSFLQAANPSPLNLEQVQI 1051

Query: 99   GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 152
            G     ++ ++ D    ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1052 GSTWVGFINNVADDCLWINLS-PNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAA 1110

Query: 153  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
            +D  +  + L++   + SK   +D   IS+ +++PG     RV  + E  V++       
Sbjct: 1111 VDTEKGRLDLTAKQGS-SKLSFED---ISVGMILPG-----RVTKVTEKQVIMQLSDTVV 1161

Query: 213  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 268
            G V++  L + +    PT   KND      + A ++ VD  ++ + L+L P  + + + P
Sbjct: 1162 GAVNLIDLADDYSKANPTVYHKNDV-----LRACVVGVDKANKKISLSLRPSKVLSSSLP 1216

Query: 269  ---------SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 318
                       +KV D+  +  V RV D GL + L    T     AYV +SD+++  +++
Sbjct: 1217 VQDPEITSMKQLKVNDVV-RGFVKRVADSGLFVTLGHDVT-----AYVRVSDLSDSYLKE 1270

Query: 319  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAV 375
             +  ++    V+ R+      +G     LK S  +       T  D+K G VV GKV  V
Sbjct: 1271 WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQVVTGKVRKV 1330

Query: 376  DSFGA--IVQFPGGVKALCPLPHMSE 399
            + FGA  ++     V  LC    M++
Sbjct: 1331 EEFGAFIVIDRSANVSGLCHRSEMAD 1356



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 104/493 (21%), Positives = 201/493 (40%), Gaps = 75/493 (15%)

Query: 934  QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 991
            +A++  + P + + ++ G   H G +H++ + D K   +      F+I     AR++  S
Sbjct: 470  EAKVVMVDPGMGVYVQMGSTKHMGFVHVSRLADGKVEHIAPEHGPFRIDSVHEARVVGYS 529

Query: 992  NKPDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV-----DNEW 1044
                   SF  L+ LS +  ++       +      DV++G  V G + K+       + 
Sbjct: 530  -------SFDGLYLLSFERKVI------EQPFLRLEDVTVGAVVKGKIEKLLIGPAGVDG 576

Query: 1045 ALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1104
             ++T++  +     +    +  + LQ  +++F  G  +T  +LS+N +K+ +RL L+   
Sbjct: 577  LIVTLADGITG--LVPSMHFADTALQFPEKKFREGLTITARILSVNLQKRQIRLTLKK-- 632

Query: 1105 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1164
                     + N     +    DIV G  S       G +V I PH      +  ++   
Sbjct: 633  --------SLLNSESAIWKDYQDIVPGSQSP------GTIVNIQPHGAVVQFYGSVRGFL 678

Query: 1165 VSDPLSGYDEGQF-DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1223
               P+S   E    DP   + +GQ V    L +   +               G  + +  
Sbjct: 679  ---PVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPAL---------------GKLAVSCK 720

Query: 1224 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYV 1282
            D ST  +T  K  EKI+   P ++V G V   +     + L    L A++ L+++ DG  
Sbjct: 721  DPSTFTETYKKAFEKIQ---PGLLVTGTVFEKSVDDVLLKLDEFGLIARLDLAHVVDG-- 775

Query: 1283 ESPEKEF-PIGKLVAGR------VLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHV 1334
             S  K+   + K+  G+      VL ++   + ++V+ + S  + A Q  +     ++  
Sbjct: 776  -SESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAAKQGSLPAKFEDIQE 834

Query: 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1394
            G  V G ++ + S GLFI      + GL     L++++    +      + V   +  +D
Sbjct: 835  GAEVTGFVRNITSDGLFIEFLG-GITGLVPKRLLADENASKPDYGMVKSQLVTATVHSID 893

Query: 1395 KEKRRISLGMKSS 1407
             + +R  L MK S
Sbjct: 894  TDFQRFILSMKPS 906



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 156/367 (42%), Gaps = 42/367 (11%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSC 61
            W G +  V +  L I L   +RG  R  DA D + L  ++E +        F +G  +  
Sbjct: 1055 WVGFINNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKH--------FPIGSALKV 1106

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYK----GLSLETVQEGMVLTAYVKSIEDHGYILH 117
             V  +D +K            RL L  K     LS E +  GM+L   V  + +   I+ 
Sbjct: 1107 HVAAVDTEKG-----------RLDLTAKQGSSKLSFEDISVGMILPGRVTKVTEKQVIMQ 1155

Query: 118  FGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV--S 170
                +  G +   +LA++      P +     +L+  V  +D+  K + LS  P  V  S
Sbjct: 1156 LS-DTVVGAVNLIDLADDYS-KANPTVYHKNDVLRACVVGVDKANKKISLSLRPSKVLSS 1213

Query: 171  KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 230
                +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L +++    WK
Sbjct: 1214 SLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDSY-LKEWK 1272

Query: 231  NDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVD 286
            + +   + V  R+  VDP    + ++L   +L    +AP +   +KVG +    KV +V+
Sbjct: 1273 DSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQVV-TGKVRKVE 1331

Query: 287  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 346
                 ++   S  VS   +   S++A++ V      Y+EG  V+ +I+      G  +  
Sbjct: 1332 EFGAFIVIDRSANVSGLCHR--SEMADKRVDDARTLYEEGDVVKAKIIKVDRESGKISFS 1389

Query: 347  LKASAFE 353
            LKAS F+
Sbjct: 1390 LKASHFK 1396


>gi|295667623|ref|XP_002794361.1| rRNA biogenesis protein RRP5 [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226286467|gb|EEH42033.1| rRNA biogenesis protein RRP5 [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 1815

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 416/1492 (27%), Positives = 714/1492 (47%), Gaps = 202/1492 (13%)

Query: 408  KFKVGAELVFRVL----GVKSKRITVTHKKTLVKSKLAILSSYAEATD-----RLITHGW 458
            K+ VGA++  R++     V+  ++  +  + +VK    +L  Y+ + D      ++    
Sbjct: 417  KYHVGAKIKGRLICTFPTVEPLKLGFSILEHVVKFSPTVLDQYSTSEDIPAVSAIVPEAK 476

Query: 459  ITKIEKH-GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASR 514
            +TK+E   G +V+F N + GF   S L    +D        Y V    + RI+       
Sbjct: 477  VTKVEPGLGVYVQFNNKLYGFVHISRLSDDKVDSISATKGPYKVDSTHEARIVGFSALDN 536

Query: 515  RINLSFMMK----PTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIP 566
               LSF  K    P    ED  V +G++V G ++  +  P+ +  ++  +A G S G +P
Sbjct: 537  LYLLSFERKVIDQPFLRLED--VAVGAVVKGKIEKLLTGPDGIDGLIVSLADGIS-GLVP 593

Query: 567  TEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 624
              HL+D  L+H    +   + G +   ++L ++ E   L L+ K SL+NS      +   
Sbjct: 594  RMHLSDTKLQHP---ERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYGD 650

Query: 625  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
            I P +   G + +I   G  V+F G + GF P S+  +    D S+ + VGQ V  + L 
Sbjct: 651  ILPGNQSPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALT 710

Query: 685  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
            V++E  ++ +S K     ST     +  F                      E    G ++
Sbjct: 711  VHAELRKLVVSCKDP---STSTETYKNAF----------------------ENIQPGDLV 745

Query: 745  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 804
               V E +   +++  E    V      H   G + ++GS + A I    K   LV LS+
Sbjct: 746  SCTVFEKSKEDILLRLEGSGLVARLNAEHVTDGQSSKNGSAL-ACIRVGQKLHDLVILSM 804

Query: 805  KTVF-IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHS 862
            + V  + +     S +QA+++       +DL     V   V+ I+ +   V  L      
Sbjct: 805  QKVHRLIKVSNKPSLKQARQRGELPAKFEDLQEGLKVTGFVKNIIADGLFVEFLRGLTGF 864

Query: 863  IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 922
            +    + D +  K P   +   Q++ + V ++       R +L LK    ++   S  A+
Sbjct: 865  LPKRLMDDDHVAK-PNFGYTLSQTISSFVHSIEDDRQ--RFILSLKENQTSKQHVSDNAR 921

Query: 923  KKS---------------SYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
              S               S+D    G + +A+I  +K  ++ ++      GRI ++E+ D
Sbjct: 922  PASNANQSSINPVDGDIKSFDDLTFGRITKAKIVSVKETQINVQLADNIQGRIDVSEIFD 981

Query: 965  DKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTV 1013
            +   + +       FK  Q +  RI+    A+S+K  P   +S    ++ELS KPS L  
Sbjct: 982  EWDAIKDRKQPLRYFKPKQIIPVRIVGIHDARSHKFLPISHRSGKYPVYELSAKPSSLES 1041

Query: 1014 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1073
            ++I    L     V IG    G++  + ++   + IS +++ +L I D + + S + +  
Sbjct: 1042 NDIE---LLSLDKVEIGSSWLGFINNIGDDCLWVNISPNVRGRLRITDVSDDLSLVGDVT 1098

Query: 1074 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1133
            + F +G A+  HV  +N +K  L L         S K  D  N    +   +G+I+ GR+
Sbjct: 1099 KNFPVGSAIKVHVTGVNVDKNRLDL---------SAKHGDPPNKRTISDFSKGEILLGRV 1149

Query: 1134 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            +K+      ++VQ+     G ++  ++ +          D  +  P + + + + ++  +
Sbjct: 1150 TKVSER--QVLVQLSDTTVGAINLIDMAD----------DYTKVIP-ANFHKNEVLRVCI 1196

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            L++    +    + LS+R S           LS+ +      ++ I  L  N IV+G+V+
Sbjct: 1197 LDVDVPNK---KILLSVRPS---------RVLSSSLPIEDPEIKSISQLKVNDIVRGFVR 1244

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             V + G F+ L  ++ A V +S+LSD Y++  + EF + +LV GR++ V+  + +++++L
Sbjct: 1245 RVANNGLFVTLGHEVTAYVRISDLSDSYLKEWQPEFQVDQLVRGRIIFVDAEANKLQMSL 1304

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDH 1372
            K S      ++ I  + +L+ G IV G+++ VE +G FI I+ T NL GLCH +E++E  
Sbjct: 1305 KESVLEPNYKAPIT-IRDLNRGQIVTGRVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQK 1363

Query: 1373 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVG 1432
            V++   ++  G+ VK KI+K+D +K RISLG+K+SYFK         S+++SD       
Sbjct: 1364 VEDARKLFEKGDIVKAKIVKIDHDKERISLGLKASYFK--------ESDDKSDG------ 1409

Query: 1433 SYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPL----------EVNLDDEQ 1482
                    ENS    +  D ESED G + L ++ES   V             E N+ DE 
Sbjct: 1410 --------ENSEYGNEQSDSESEDDGEIEL-ELESDDDVSMGGVDLGGGDGSESNVSDED 1460

Query: 1483 PDM----DNGIS----------QNQGHT--DEAKTIDEKNNRHAKKKEKEEREQEIRAAE 1526
              M    D G++             G T  DEA      ++  A  K+K+ R+ EI+   
Sbjct: 1461 VQMAGTEDTGVTGGLVTSGFDWNGSGTTVVDEANDSCSSSDGQAVPKKKKRRKPEIQVDR 1520

Query: 1527 ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1586
               L+   P++  ++ERL+   P+SS +W+KYMAF L +++V+KAR IAERAL++I I +
Sbjct: 1521 TGDLDAHGPQSIADYERLLLGEPDSSLLWLKYMAFQLELSEVDKAREIAERALRSIRIGQ 1580

Query: 1587 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1646
            + EK NIW+A  NLEN +GN  ++++  VF+RA QY DP+++H  +  +Y ++ +N+ AD
Sbjct: 1581 DAEKFNIWIAMLNLENIFGN--DDSLEDVFKRACQYNDPQEIHERMTSIYIQSGKNEKAD 1638

Query: 1647 ELLYKMI-KKFKHSCKVWLRRVQRL---LKQQQEGVQAVVQRALLSLPRHKHIKFISQTA 1702
            EL    + KKF  S  +++     L   L   Q G +A++ RA+ SLP H H+   S+  
Sbjct: 1639 ELFQTTLKKKFTQSPNIYINYATFLFDTLSDPQRG-RALLPRAIQSLPAHTHVDITSKFG 1697

Query: 1703 ILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS- 1759
             LEF+  NG  +RGR++FE +LS +PKR DLW++ LD EIR GD + +R LFER + L  
Sbjct: 1698 QLEFRSPNGDIERGRTVFEALLSSFPKRVDLWNVLLDLEIRNGDAEQVRRLFERVLGLGH 1757

Query: 1760 -------------LPPKKMKFLFKKYLEYEKSV--GEEERIEYVKQKAMEYV 1796
                         L  K+ KF FKK+L +E+ V  G E+ ++ VK +A  YV
Sbjct: 1758 GIAADGTETGPKKLKDKQAKFFFKKWLAFEEKVGGGNEKMVDEVKARAAAYV 1809



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 191/763 (25%), Positives = 331/763 (43%), Gaps = 63/763 (8%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL---------- 48
           K+ G V+ +N  D+ + LP  L G   L   +      ++  + +NED            
Sbjct: 161 KVLGQVSSINAHDIGLSLPNNLTGYVPLTSISKTFQQKIEKLLNSNEDENEGSDDGGSDD 220

Query: 49  -----LPTIFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLSLLYKGLSLETVQEGM 100
                L + F +GQ +   V   + + K     GK+ I LS+       GLS   +    
Sbjct: 221 EEDLDLKSYFKLGQYLRASVTATESETKNPQTKGKKHIQLSVDPRDANSGLSKSDMVVNT 280

Query: 101 VLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTR 157
            + A V S+EDHG ++  GL      GF+    +  +  +  +K G +   VV   +   
Sbjct: 281 TVQASVVSVEDHGLVMDLGLDDGQTKGFMSSKEIPPDLEVSQIKEGSVFLCVVTGHNANG 340

Query: 158 KVVYLSSD-PDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 215
            VV LS++ P   S   +  L    +I+  +PG      +  +   G+    +      V
Sbjct: 341 SVVKLSANLPAAGSIKKSHYLTSAPTINSFLPGTAAEILLNEVTSTGMAGKIMGMLDAVV 400

Query: 216 DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL---------TLNPYLLHNRA 266
           D+    +T  T +    Y+   K+  R++   PT   + L           +P +L   +
Sbjct: 401 DLVQSGSTTGTEDLTTKYHVGAKIKGRLICTFPTVEPLKLGFSILEHVVKFSPTVLDQYS 460

Query: 267 PPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKK 322
               +  V  I  ++KV +V+ GLG+ +   +       +V IS +++++V  +   +  
Sbjct: 461 TSEDIPAVSAIVPEAKVTKVEPGLGVYVQFNN---KLYGFVHISRLSDDKVDSISATKGP 517

Query: 323 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF 378
           YK  S    RI+GF  L+ L     +    +       DV  G VVKGK+       D  
Sbjct: 518 YKVDSTHEARIVGFSALDNLYLLSFERKVIDQPFLRLEDVAVGAVVKGKIEKLLTGPDGI 577

Query: 379 -GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 435
            G IV    G+  L P  H+S+ ++  P +KF+ GA++  R+L V  + +++ +T KK+L
Sbjct: 578 DGLIVSLADGISGLVPRMHLSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSL 637

Query: 436 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 495
           + S+      Y +      + G I  I  HG  V+FY  V+GF P SE+      +PS  
Sbjct: 638 LNSESPAWKEYGDILPGNQSPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQH 697

Query: 496 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNA 550
           + VGQVV    ++     R++ +S    P+  +E      + ++ G LVS  V   +   
Sbjct: 698 FIVGQVVNVHALTVHAELRKLVVS-CKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKED 756

Query: 551 VVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--S 606
           +++ +   G     +  EH+ D    ++ + + + I+ G +   L++L  +  + L+  S
Sbjct: 757 ILLRLEGSGLV-ARLNAEHVTDGQSSKNGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVS 814

Query: 607 AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
            K SL  + Q  +LP+    +     V G+V NII  G FV FL  LTGF P+    D  
Sbjct: 815 NKPSLKQARQRGELPAKFEDLQEGLKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDH 874

Query: 665 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
            A  +  Y + Q++ S +  +  +  R  LSLK++  S    S
Sbjct: 875 VAKPNFGYTLSQTISSFVHSIEDDRQRFILSLKENQTSKQHVS 917


>gi|158186708|ref|NP_001101074.2| programmed cell death protein 11 [Rattus norvegicus]
          Length = 1876

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 394/1400 (28%), Positives = 648/1400 (46%), Gaps = 160/1400 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LV+ LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 84   MRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLEDLLRLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  LD    E GK+ + LS+    + K LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSAEALRPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FL      E     N G   K G  L  VV  +     VV LS +   
Sbjct: 202  YLVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGVVSLSVEHSQ 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+FTG VD  HL+       
Sbjct: 262  VSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFFTGLVDFMHLE-----PK 316

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
                Y+  + V A IL V P +R V L+L P  LH   P + +   ++G + D + V   
Sbjct: 317  KMGSYSSKQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTVLDDASVEGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G +  +    +   AY  +S +++ +     + +K GS  R RI+ +  ++ LA  
Sbjct: 377  FEKAGAIFRLRDGVL---AYARLSHLSDSKKAFSAEAFKLGSTHRCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S        + D+K G +VKGKV+A+  FG +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KKF  G E+  RVL    ++K++ +T KKTLV SKL  ++ Y +A   L THG I +++
Sbjct: 494  EKKFNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEDAKPGLQTHGVIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
             +GC V+FYN VQG  P+ EL      +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLL 613

Query: 524  PTRVSEDDLVK----------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                 +D+ VK           G LV   V   T N + V ++        +PT HL+DH
Sbjct: 614  SGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNIP-AFLPTPHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I P  ++
Sbjct: 673  VANGPLLHHWLQTGDTLHRVLCLSQSEKHILLCRKPALVSTVEGGQDPKSLSEIQPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G FV+F   L+G +P++   D      S+ +  GQ+V + + +V+    R
Sbjct: 733  IGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQR 792

Query: 692  ITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVIEGK 747
            + LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G V++  
Sbjct: 793  MLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMVLDAM 852

Query: 748  VHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            V E  + G VV       D+    + +  AG  +E G   +  +L V   +  V +SL  
Sbjct: 853  VQEVLENGSVVFGGGPVPDLILRASRYHRAGQELEPGQKKKVVVLHVDALKLEVHVSLHQ 912

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              ++R           K ++ R+ S+    HQ    IV+ ++E++ V SL E  H + ++
Sbjct: 913  DLVNR-----------KARKLRKNSR----HQ---GIVQHLEESFAVASLVETGHLVAFS 954

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL---------LKAISETETS 916
             +S  N T  F  ++   GQ V  T+       T G +L +         + A  ++ET 
Sbjct: 955  LISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVT-GLILAVEGPASKRIRMPAQRDSETV 1013

Query: 917  SSK--------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 962
              K              R+KK  S  +G  V   I  +K     +    GF G IH++ +
Sbjct: 1014 DDKGEEEEEEEEEDLTVRSKKSHSLAIGDKVTGTIKSVKATHAVVTLDDGFIGCIHVSRI 1073

Query: 963  NDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSIKPSMLTV 1013
             DD    V    +  K G+ VTAR+I     K++K  P     F   + ELS++PS L  
Sbjct: 1074 LDDVPEGVSPT-TTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSVRPSELK- 1131

Query: 1014 SEIGSKLLFEECDVS---------IGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDS 1062
               G         VS          GQ VT ++  Y V  +W  + I   ++ ++ +L +
Sbjct: 1132 ---GDYRALNTHSVSPMEKIRQYQAGQTVTCFLKKYNVMKKWLEVDIEPDIRGRIPLLLT 1188

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISNDNMQT 1121
            +     L+   ++F IG+A+   V+  +  +  L L ++ P++                 
Sbjct: 1189 SLSFKVLKHPDKKFQIGQAIKATVVGPDIPRAFLCLSLIGPYK----------------- 1231

Query: 1122 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
             + EGD+  GR+ K+L    GL V       G+V    L +         Y E   +PL+
Sbjct: 1232 -LEEGDVAMGRVLKVLPN-KGLTVSFPFGRIGKVSVFHLSD--------SYSE---EPLT 1278

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
             +   + V+C +L  +  +     + LSLR      SS  + +  + ++ P   +  IED
Sbjct: 1279 DFCPQKIVRCYILSTAHRM-----LALSLR------SSRTNKETKSKIEDP--EVNSIED 1325

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGR 1298
            +    +++GYVK++      I L   +   V  S++S       E   K  P GKLV  R
Sbjct: 1326 IQAGQLLRGYVKSILPSSVVIGLGPSVMGLVKHSHVSQCVSREKELYDKCLPEGKLVTAR 1385

Query: 1299 VLSVEPLSKRVEVTLKTSDS 1318
            VL V P    +E++L  SD+
Sbjct: 1386 VLCVNPKKNLIELSLLPSDT 1405



 Score =  277 bits (709), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 137/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)

Query: 1516 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1574
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1586 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1645

Query: 1575 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1634
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1646 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLAKVFERAVQYNEPLKVFLHLAD 1703

Query: 1635 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1693
            +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +
Sbjct: 1704 IYTKSEKFKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPTKE 1763

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753
            H+  I + A LEF+ G  +R +++FE  L+ YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1764 HVDVIVKFAQLEFQLGDVERAKAIFENTLTTYPKRTDVWSVYIDMTIKHGSQKEVRDIFE 1823

Query: 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1824 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1868



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 145/347 (41%), Gaps = 55/347 (15%)

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
            EP ++  +  +    + V   +L ++   +++RL LRP           IS   + T + 
Sbjct: 314  EPKKMGSYSSK----QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTVLD 369

Query: 1125 EGDIVG-----GRISKILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFD 1178
            +  + G     G I ++  GV           Y R+ H ++ K    ++           
Sbjct: 370  DASVEGFFEKAGAIFRLRDGVLA---------YARLSHLSDSKKAFSAE----------- 409

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
                +  G   +C++++ S+         LSLR S+              +  P     +
Sbjct: 410  ---AFKLGSTHRCRIIDYSQMDELAL---LSLRKSI--------------IAAP---FLR 446

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
             +D+    IV+G V  +   G  + +  ++   V   +L+D  +++PEK+F  G  V  R
Sbjct: 447  YQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCR 506

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VL  +P +K++ +TLK +   T+    I    +   G    G I RV+ YG  +   N +
Sbjct: 507  VLLCDPEAKKLIMTLKKTLV-TSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYN-D 564

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + GL    ELS  H+ + E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 565  VQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK 611



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 102/257 (39%), Gaps = 35/257 (13%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            I  G IV G++  +     G++V++G  + G V    L +I + +P   ++ G       
Sbjct: 450  IKTGTIVKGKVLALKPF--GMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTG------- 500

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
             DE   VKC+VL      +      ++L+ +L              V +    +   ED 
Sbjct: 501  -DE---VKCRVLLCDPEAKKLI---MTLKKTL--------------VTSKLPAITCYEDA 539

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
             P +   G +  V   GC +     +   V    LS  ++  PE+ F  G++V   VL+ 
Sbjct: 540  KPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNC 599

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNL----SNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            EP  +R+ ++ K           + N     S ++ G +V  ++      GL + I   N
Sbjct: 600  EPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHN 659

Query: 1359 LVGLCHVSELSEDHVDN 1375
            +        LS DHV N
Sbjct: 660  IPAFLPTPHLS-DHVAN 675


>gi|258573391|ref|XP_002540877.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901143|gb|EEP75544.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1819

 Score =  429 bits (1102), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 380/1345 (28%), Positives = 660/1345 (49%), Gaps = 171/1345 (12%)

Query: 533  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 587
            V +G++V G ++  ++ P+ +  ++  +A G S G IP  H+AD  L+H    +   + G
Sbjct: 564  VTVGAIVKGKIEKLLIGPDGINGLIVSLADGIS-GLIPGMHMADTKLQHP---EKKFREG 619

Query: 588  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
             E   ++L ++ E   L L+ K SL++S   +  D   I P +   G + +I   G  V+
Sbjct: 620  LEVTARILSVNLEKRQLRLTLKKSLLHSESTIWKDYKDISPGNQSPGTLVSIQNNGAVVQ 679

Query: 647  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            F G + GF P S+  +    D S+ + VGQ V  N+L V+SE GR+ +    SC    D 
Sbjct: 680  FYGAVRGFLPVSEMSEAYIKDPSQHFTVGQVVSVNVLSVDSEKGRLVV----SC---KDP 732

Query: 707  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
            S + E +               G+    +E    G ++ G V E +   +++  E+   +
Sbjct: 733  STVTEAY--------------RGA----LESVRPGQLVSGVVFEKSSDDLLLKLEDGG-L 773

Query: 767  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 826
               ++  QL+ ++    +   A I   AKA               F   ++        +
Sbjct: 774  IARLSAEQLSDSSPSKAASNFARIRVGAKASW------------PFNTQHTESSPPNPGK 821

Query: 827  KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS 886
                 ++L ++ +V  +V+ +  + + +   E         + D          F+  Q+
Sbjct: 822  LPAKFEELQLNSSVTGLVKNITADGIFVEFLEGLTGFLPKRLVDDEHSNRTDFGFMRSQT 881

Query: 887  VIATVMALPSSSTAGRLLLLLKAIS-ETETSSSKRAKKKS--------------SYD--- 928
            +  +V ++   +   R +L +K +  + E  S ++   +S              S+D   
Sbjct: 882  ISCSVSSIEQDTQ--RFILTMKPVEIKDEGKSHRQGTTRSAGLSVANPVDEDIKSFDDLE 939

Query: 929  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTAR 986
             G   +A+IT +K  +L +       GRI ++E+ D+  ++ +       FK  Q V  +
Sbjct: 940  FGKCTKAKITSVKDTQLNVLLADNVQGRIDVSEIFDNWEDIKDRKQPLRPFKAKQIVPVK 999

Query: 987  IIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1037
            ++   +    K         K+ ++ELS KPS L   E    L  E+  V +G  + G++
Sbjct: 1000 VLGIHDARTHKFLPISHRSGKTPMFELSTKPSTLASPEY-EPLTIEK--VKVGSSLLGFI 1056

Query: 1038 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1097
                ++   L IS +++ +L I+D + + +   + ++ F IG A+   V +++ +K  L 
Sbjct: 1057 NNFGDDCLWLNISPNVRGKLRIMDISDDLALAGDIKKTFPIGSALKVTVTAVDVDKNRLD 1116

Query: 1098 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1157
            L  R    G S KT+ IS+      + +G I+ G+++K+       +VQ+   L G +  
Sbjct: 1117 LTAR---HGESSKTLTISD------LSKGMILLGKVTKVTERQA--LVQLNDSLVGAIGL 1165

Query: 1158 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1217
             ++                 D  S  +  +F K +VL +         V++ + +    +
Sbjct: 1166 IDMA----------------DDYSKINPAKFHKNEVLRVCV-------VDVDVPNKKVSL 1202

Query: 1218 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1277
            S   S  LS+ +      +  ++ L    IV+G+V+ V   G F+ML   + A V +S+L
Sbjct: 1203 SVRPSKVLSSSLPVEDPEITSVDKLKVGDIVRGFVRKVADVGLFVMLGHNVTAYVRVSDL 1262

Query: 1278 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1337
            SD Y++  + EF + ++V GR+  V+  + +V++TLK S      +  +  LS+L  G I
Sbjct: 1263 SDAYLKEWQDEFQVDQIVRGRITLVDTEAGKVQMTLKQSALDPNYKPPLQ-LSDLKQGQI 1321

Query: 1338 VIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKE 1396
            V G++++VE +G F+TI+ T NL GLCH SE++E  V +   +Y  G+ VK KILKVD E
Sbjct: 1322 VTGKVRKVEEFGAFVTIDGTANLSGLCHRSEMAEQKVADARKLYEQGDLVKAKILKVDTE 1381

Query: 1397 KRRISLGMKSSYFKND--ADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAV-QDMDME 1453
            K +ISLG+K+SYF  D  AD+    +  + + + ++ G  N  ++L + S    +D+ M 
Sbjct: 1382 KAQISLGLKASYFNEDSEADSDMGEAASDDESSDDDFGGVNLETVLSDDSSDDGEDIIM- 1440

Query: 1454 SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH--------TDEAKTIDEK 1505
                G + L QI    S+P    N DD Q   D+      G         T  A+   + 
Sbjct: 1441 ----GGVNLPQI----SIPIANANDDDVQMADDDDDDDEAGGLVTGGFDWTGNARKAHQT 1492

Query: 1506 NN-------RHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKY 1558
            +N         A  K+K+ R+ EI+      L+ + P+T  ++ERL+   P+SS +W+KY
Sbjct: 1493 SNNAGSDSDEQAVSKKKKRRKAEIQVDRTGDLDVNGPQTVADYERLLLGEPDSSLLWLKY 1552

Query: 1559 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1618
            MAF L + +V+KAR IAERAL++INI ++ EKLN+WVA  NLEN +G   ++ + +VF+R
Sbjct: 1553 MAFHLELGEVDKAREIAERALRSINISQDTEKLNVWVAMLNLENTFGT--DDRLDEVFKR 1610

Query: 1619 ALQYCDPKKVHLALLGLY---ERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQ 1674
            A QY D +++H  +  ++   ++ E ++ AD++    + KKF  S  ++L     L    
Sbjct: 1611 ACQYNDAQEIHERMASIFIQSDKPEIDQKADQIFQAALKKKFSQSPNLFLNYANFLFDTM 1670

Query: 1675 Q--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTD 1730
               +  +A++ RAL +LP H HI   S+   LEF+  NG  +RGR++FEG+LS +PKR D
Sbjct: 1671 AAPDRGRALLPRALQALPAHTHIDLTSKFGQLEFRSPNGDIERGRTVFEGLLSSFPKRVD 1730

Query: 1731 LWSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYE 1776
            LW+I LD EI++GD + +R LFER + L               L  K+ KF FKK+L +E
Sbjct: 1731 LWNILLDLEIKVGDAEQVRRLFERVLGLGHGVNADGSKSGTKKLKDKQAKFFFKKWLAFE 1790

Query: 1777 KSV--GEEERIEYVKQKAMEYVEST 1799
            +SV  G E+ ++ VK +A EYV+S+
Sbjct: 1791 ESVSGGNEKMVDEVKARAAEYVKSS 1815



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 191/745 (25%), Positives = 325/745 (43%), Gaps = 65/745 (8%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE--------------ANEDN 47
           KL G V  +   D+ + LP  L G      A+  +L  ++E               ++D 
Sbjct: 173 KLLGQVTNIGTHDISLALPNNLTGYIPWT-AVSKLLKEKVEKLLKDADKEDDEESDDDDF 231

Query: 48  LLPTIFHVGQLVSCIV--LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
            L +   +GQ     V     +++K    K++I LS+       GLS   +     + A 
Sbjct: 232 DLKSYVRLGQYFRASVSSTTANNEKGGRSKKRIELSIDPREANSGLSRSDMIIDSTVQAS 291

Query: 106 VKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVV 160
           V S+ED+G I+  GL      GF+    L   +G D   VK G +   VV   +    V+
Sbjct: 292 VISVEDYGLIMDVGLEDGETRGFMSSKELP--AGTDFSQVKEGAVFLCVVTGHNTAGNVI 349

Query: 161 YLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 218
            LS++ +  +            +I+  +PG      V  +  NG+    +      VD  
Sbjct: 350 KLSANLEKAASGKKSHYISSAPTINTFLPGTAAEILVTEVTPNGMAGKIMGMLDTMVDSV 409

Query: 219 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH------NRAPPSH 270
           H  +T    +    Y    KV  RI++   +     +G ++  ++L       + A  S 
Sbjct: 410 HSGSTDDKRDLTKKYRLGTKVKGRIIYRVSSDEKPKLGFSILDHVLKFSLTTVDAAQDSK 469

Query: 271 VK--VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKE 325
            +  +  I  + KV +VD  LGL + + +T      +V IS V + ++  L   E  +K 
Sbjct: 470 RRPAISAIIPEVKVTKVDPALGLYVQLGTT--EHLGFVHISRVKDGKISSLSPTEGSFKV 527

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GA 380
           GS    R++GF  ++ L    L+ +  +       DV  G +VKGK+    I  D   G 
Sbjct: 528 GSSHEGRVVGFNAMDNLFLLSLEKNIIDQPFLRLEDVTVGAIVKGKIEKLLIGPDGINGL 587

Query: 381 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS 438
           IV    G+  L P  HM++ ++  P KKF+ G E+  R+L V  + +++ +T KK+L+ S
Sbjct: 588 IVSLADGISGLIPGMHMADTKLQHPEKKFREGLEVTARILSVNLEKRQLRLTLKKSLLHS 647

Query: 439 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
           +  I   Y + +    + G +  I+ +G  V+FY  V+GF P SE+      +PS  + V
Sbjct: 648 ESTIWKDYKDISPGNQSPGTLVSIQNNGAVVQFYGAVRGFLPVSEMSEAYIKDPSQHFTV 707

Query: 499 GQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVV 553
           GQVV   ++S      R+ +S    P+ V+E      + V+ G LVSGVV   + + +++
Sbjct: 708 GQVVSVNVLSVDSEKGRLVVS-CKDPSTVTEAYRGALESVRPGQLVSGVVFEKSSDDLLL 766

Query: 554 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 613
             +  G     +  E L+D         S  K    F ++ V    S         S   
Sbjct: 767 K-LEDGGLIARLSAEQLSDS--------SPSKAASNFARIRVGAKASWPFNTQHTESSPP 817

Query: 614 SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 673
           +  +LP+    +  NS V G V NI   G FV FL  LTGF P+ + VD + ++ +   +
Sbjct: 818 NPGKLPAKFEELQLNSSVTGLVKNITADGIFVEFLEGLTGFLPK-RLVDDEHSNRTDFGF 876

Query: 674 V-GQSVRSNILDVNSETGRITLSLK 697
           +  Q++  ++  +  +T R  L++K
Sbjct: 877 MRSQTISCSVSSIEQDTQRFILTMK 901



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 190/430 (44%), Gaps = 51/430 (11%)

Query: 36   ILDN--EIEANEDNLLPTIFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRL 84
            I DN  +I+  +  L P  F   Q+V   VL + D +           GK  ++ LS + 
Sbjct: 973  IFDNWEDIKDRKQPLRP--FKAKQIVPVKVLGIHDARTHKFLPISHRSGKTPMFELSTKP 1030

Query: 85   SLL----YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI-- 138
            S L    Y+ L++E V+ G  L  ++ +  D    L+   P+  G L   +++++  +  
Sbjct: 1031 STLASPEYEPLTIEKVKVGSSLLGFINNFGDDCLWLNIS-PNVRGKLRIMDISDDLALAG 1089

Query: 139  DVKP----GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 194
            D+K     G  L+  V ++D  +  + L++     SK +T       I  L  GM++  +
Sbjct: 1090 DIKKTFPIGSALKVTVTAVDVDKNRLDLTARHGESSKTLT-------ISDLSKGMILLGK 1142

Query: 195  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 254
            V  + E   ++       G + +  + + +   N    +++++ +   ++ VD  ++ V 
Sbjct: 1143 VTKVTERQALVQLNDSLVGAIGLIDMADDYSKIN-PAKFHKNEVLRVCVVDVDVPNKKVS 1201

Query: 255  LTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 305
            L++ P  + + + P           +KVGDI         D GL ++L    T     AY
Sbjct: 1202 LSVRPSKVLSSSLPVEDPEITSVDKLKVGDIVRGFVRKVADVGLFVMLGHNVT-----AY 1256

Query: 306  VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDV 362
            V +SD+++  +++ + +++    VR RI       G     LK SA +         SD+
Sbjct: 1257 VRVSDLSDAYLKEWQDEFQVDQIVRGRITLVDTEAGKVQMTLKQSALDPNYKPPLQLSDL 1316

Query: 363  KPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
            K G +V GKV  V+ FGA V   G   +  LC    M+E ++    K ++ G  +  ++L
Sbjct: 1317 KQGQIVTGKVRKVEEFGAFVTIDGTANLSGLCHRSEMAEQKVADARKLYEQGDLVKAKIL 1376

Query: 421  GVKSKRITVT 430
             V +++  ++
Sbjct: 1377 KVDTEKAQIS 1386



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 134/597 (22%), Positives = 239/597 (40%), Gaps = 105/597 (17%)

Query: 815  ANSNRQAQKKKR------KREASK-----DLGVHQTVNAIVEIVKENYLVLSLP-EYNHS 862
            AN+ +  + KKR       REA+      D+ +  TV A V  V++  L++ +  E   +
Sbjct: 252  ANNEKGGRSKKRIELSIDPREANSGLSRSDMIIDSTVQASVISVEDYGLIMDVGLEDGET 311

Query: 863  IGYASVSDYNTQKFPQ----KQFLNGQSVIATVMALPSSSTAGRLLLLL----KAISETE 914
             G+ S     +++ P      Q   G   +  V      +TAG ++ L     KA S  +
Sbjct: 312  RGFMS-----SKELPAGTDFSQVKEGAVFLCVVTG---HNTAGNVIKLSANLEKAASGKK 363

Query: 915  TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH------ITEVNDDKSN 968
            +     A   +++  G+  +  +TE+ P         G  G+I       +  V+   ++
Sbjct: 364  SHYISSAPTINTFLPGTAAEILVTEVTP--------NGMAGKIMGMLDTMVDSVHSGSTD 415

Query: 969  VVENLFSNFKIGQTVTARII---AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC 1025
               +L   +++G  V  RII   +   KP +  S L  + +K S+ TV            
Sbjct: 416  DKRDLTKKYRLGTKVKGRIIYRVSSDEKPKLGFSILDHV-LKFSLTTVDAAQDSKRRPAI 474

Query: 1026 DVSIGQRVTGYVYKVDNEWAL---LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1082
               I +     V KVD    L   L  + HL           + S L   +  F +G + 
Sbjct: 475  SAIIPEV---KVTKVDPALGLYVQLGTTEHLGFVHISRVKDGKISSLSPTEGSFKVGSSH 531

Query: 1083 TGHVLSINKEKKLLRLVL------RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
             G V+  N    L  L L      +PF   + D TV             G IV G+I K+
Sbjct: 532  EGRVVGFNAMDNLFLLSLEKNIIDQPFLR-LEDVTV-------------GAIVKGKIEKL 577

Query: 1137 L---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            L    G+ GL+V +   + G +    + +  +  P     E +F       EG  V  ++
Sbjct: 578  LIGPDGINGLIVSLADGISGLIPGMHMADTKLQHP-----EKKFR------EGLEVTARI 626

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            L ++   R    + L+L+ SL    ST   D               +D+SP     G + 
Sbjct: 627  LSVNLEKR---QLRLTLKKSLLHSESTIWKDY--------------KDISPGNQSPGTLV 669

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            ++ + G  +     +   + +S +S+ Y++ P + F +G++V+  VLSV+    R+ V+ 
Sbjct: 670  SIQNNGAVVQFYGAVRGFLPVSEMSEAYIKDPSQHFTVGQVVSVNVLSVDSEKGRLVVSC 729

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K  D  T +++    L ++  G +V G +    S  L + +E+  L+      +LS+
Sbjct: 730  K--DPSTVTEAYRGALESVRPGQLVSGVVFEKSSDDLLLKLEDGGLIARLSAEQLSD 784



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 124/551 (22%), Positives = 210/551 (38%), Gaps = 118/551 (21%)

Query: 934  QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 991
            + ++T++ P L L ++ G   H G +HI+ V D K + +     +FK+G +   R++  +
Sbjct: 480  EVKVTKVDPALGLYVQLGTTEHLGFVHISRVKDGKISSLSPTEGSFKVGSSHEGRVVGFN 539

Query: 992  NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV---DNEWALLT 1048
                M   FL  LS++ +++       +      DV++G  V G + K+    +    L 
Sbjct: 540  A---MDNLFL--LSLEKNII------DQPFLRLEDVTVGAIVKGKIEKLLIGPDGINGLI 588

Query: 1049 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF----Q 1104
            +S        I       ++LQ  +++F  G  VT  +LS+N EK+ LRL L+      +
Sbjct: 589  VSLADGISGLIPGMHMADTKLQHPEKKFREGLEVTARILSVNLEKRQLRLTLKKSLLHSE 648

Query: 1105 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1164
              I     DIS  N            G +  I +   G VVQ    + G +  +E+    
Sbjct: 649  STIWKDYKDISPGNQSP---------GTLVSIQNN--GAVVQFYGAVRGFLPVSEMSEAY 697

Query: 1165 VSDPLSGYDEGQF--------------------DP----------LSGYDEGQFVKCKVL 1194
            + DP   +  GQ                     DP          L     GQ V   V 
Sbjct: 698  IKDPSQHFTVGQVVSVNVLSVDSEKGRLVVSCKDPSTVTEAYRGALESVRPGQLVSGVVF 757

Query: 1195 EIS------RTVRGTFHVELSLRSSLDGMSSTNSSDLS------------------TDVD 1230
            E S      +   G     LS     D   S  +S+ +                  +   
Sbjct: 758  EKSSDDLLLKLEDGGLIARLSAEQLSDSSPSKAASNFARIRVGAKASWPFNTQHTESSPP 817

Query: 1231 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1290
             PGK   K E+L  N  V G VKN+T+ G F+     L   +    + D +    +  F 
Sbjct: 818  NPGKLPAKFEELQLNSSVTGLVKNITADGIFVEFLEGLTGFLPKRLVDDEHSNRTDFGFM 877

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSD------------SRTASQS-------EINNLSN 1331
              + ++  V S+E  ++R  +T+K  +            +R+A  S       +I +  +
Sbjct: 878  RSQTISCSVSSIEQDTQRFILTMKPVEIKDEGKSHRQGTTRSAGLSVANPVDEDIKSFDD 937

Query: 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---------YRA 1382
            L  G     +I  V+   L + + + N+ G   VSE+     DN E I         ++A
Sbjct: 938  LEFGKCTKAKITSVKDTQLNVLLAD-NVQGRIDVSEI----FDNWEDIKDRKQPLRPFKA 992

Query: 1383 GEKVKVKILKV 1393
             + V VK+L +
Sbjct: 993  KQIVPVKVLGI 1003


>gi|378726693|gb|EHY53152.1| 30S ribosomal protein S1 [Exophiala dermatitidis NIH/UT8656]
          Length = 1811

 Score =  428 bits (1101), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 370/1424 (25%), Positives = 677/1424 (47%), Gaps = 182/1424 (12%)

Query: 466  GCFVRFYNGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
            G +++      GFA  S L  D      E S  + +G   K RI+   P      +S   
Sbjct: 472  GIYLQLSPNTVGFAHVSRLSDDKVEMLSETSGPFKLGSEHKARIIEYNPVDDLYLVSLQK 531

Query: 523  KPTRVS----EDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-H 573
            K    S    ED  V LG++V   ++  +V P+ V  +V  +A+G S G +P  HL+D  
Sbjct: 532  KVLEQSFLRYED--VPLGAIVKATIEKLLVGPDGVRGLVVNLAEGIS-GLVPQIHLSDVE 588

Query: 574  LEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 626
            L+H         P  +F +       ++  D +   + L+ K +L+NS Q+       I 
Sbjct: 589  LKH---------PERKFREGQTVTARVITTDPQKKRIRLTLKKTLVNSDQKPWLRYEDIE 639

Query: 627  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 686
                  G +  +   G  VRF G + GF P S+  +    D ++ + VGQ V    + VN
Sbjct: 640  SGDSTLGTLTKVDPLGAVVRFYGPVRGFLPVSEMSEAYIKDATEHFRVGQVVTVTAISVN 699

Query: 687  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 746
                R+T+S     C   +                    K N S    +     G++++G
Sbjct: 700  PAERRLTVS-----CRDIN--------------------KSNPSIESSLSSLEPGTIVKG 734

Query: 747  KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
             V E +   +++  +    +      H   G++ +     ++A   +   ++L D+ +  
Sbjct: 735  TVFEKSQDDILLRLDGSDAIARLTKDHVSDGSSKKR----ESAFNKIRVGQKLEDVVVLQ 790

Query: 807  VFIDRFREANSNRQAQKKKRKR----EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 862
            V   R     SN+Q+  K  +     ++ + L  +  V   V  +  + + +S       
Sbjct: 791  VLPKRRLVMVSNKQSLIKAAQEGTLLKSYEQLQPNALVTGFVSNITSDGVFVSFAGGISG 850

Query: 863  I---GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK---AISETETS 916
            +       V   + + F   +F   Q V A V+++       R  L ++   A +  E +
Sbjct: 851  LITKAQVPVEATDERDFGMTKF---QPVTAKVLSIDYKGATPRFWLTMRENPANTRPEPA 907

Query: 917  SSK-------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 963
            ++                K  +   VG + +A I  +K  ++ ++      GRI  +E+ 
Sbjct: 908  AAAVQDVPALVNPVDTELKTINDLSVGRVTKARIISVKDTQINVELAKDVQGRIDASEIF 967

Query: 964  DDKSNVVEN--LFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLT 1012
            D+  ++ +       F   Q +T +I+   +  + +         K+ ++ELS KPS  T
Sbjct: 968  DEWKDIKDRKRPLKQFSPKQELTVKILGAHDTRNHRFLPLTHRNGKNTVFELSCKPS--T 1025

Query: 1013 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1072
            V+   + +L +  D+S+G     +V  +      + IS  ++ ++   D + + S     
Sbjct: 1026 VAAPNNSIL-KLTDLSVGSSWLAFVNNISENGLWVNISPSVRGRIRATDVSDDLSLAANL 1084

Query: 1073 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1132
            ++ F IG A+  HVL+++ EK  L L  R   DG++  ++ I +      + +G ++ GR
Sbjct: 1085 EKAFPIGSALKVHVLAVDPEKNRLDLTAR--SDGLA-SSLTIKD------VSKGLVLPGR 1135

Query: 1133 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1192
            ++++      ++VQ+     G V   ++ +          D  + +P + + +   ++  
Sbjct: 1136 VTRVTDR--NILVQLSDQAVGAVDLIDMAD----------DYNEANP-AKFQKNDILRVC 1182

Query: 1193 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1252
            VL++    +    ++LS R S           LS+ +      +  I  LS N +V+G++
Sbjct: 1183 VLKVDVPNK---KIQLSTRPS---------KVLSSSMKVTDPEITSISQLSVNDVVRGFI 1230

Query: 1253 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1312
             NV+ KG F+ L   + A V +++LSD +++  +  F   +LV G+++ ++  S  V+++
Sbjct: 1231 SNVSDKGVFVTLGHGVTAFVRVTHLSDSFLKEWKDHFQRDQLVKGKIIMIDQASGHVQMS 1290

Query: 1313 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSED 1371
            LK S      ++ +   ++LHVGDIV G++ +VE +G+FI ++N+ N+ GLCH SE++E 
Sbjct: 1291 LKESALDPNYKAPLT-FNDLHVGDIVTGKVVKVEPFGVFIAVDNSENVRGLCHRSEIAEK 1349

Query: 1372 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEV 1431
             V++   +++ G+ VK K+LK+D  +R+++ GMK+SYF +  D+    SE +SD      
Sbjct: 1350 RVEDATKLFKEGDAVKAKVLKLDPAQRKVNFGMKASYFIDTVDD-DAESEADSDTESHVS 1408

Query: 1432 GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQ 1491
            G    + L E+    +QD D   + G     +  +     P     +D E  + D+  ++
Sbjct: 1409 GG---AQLGEDEDEDMQDAD---DSGEEEDASDSDDDEDDPDNASEVDGETGESDDSEAE 1462

Query: 1492 NQGHTDEA---------------------------------KTIDEKNNRHAKKKEKEER 1518
             Q   D A                                  + DE  +  AK  +K+++
Sbjct: 1463 EQEVKDSAAASQGKGLNVGGFNWYGMPEAPSTTGSKRAAEESSSDEDADTAAKVPKKKKK 1522

Query: 1519 EQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1578
               I+      L+ D P++ D+FERL+ S P+SS +W++YMAF L + D ++AR I ERA
Sbjct: 1523 RAGIQVDRTGDLDVDGPQSIDDFERLLMSEPDSSLLWLQYMAFHLELGDADQARQIGERA 1582

Query: 1579 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1638
            L++I + +E EKLN+WVA  NLEN YG+  +E +  +F+RA +Y DP++++  L  +Y +
Sbjct: 1583 LKSIGLGQEAEKLNVWVALLNLENAYGD--DETIEAIFKRACEYNDPQEIYSRLTSIYIQ 1640

Query: 1639 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHIK 1696
            + ++  ADEL  +M+KKF    KVW+     L  +    +  +A++ RAL +LP+  H  
Sbjct: 1641 SGKHDKADELFQRMLKKFAQDPKVWINYATFLFDRVGDADKARALLPRALQTLPKFTHFD 1700

Query: 1697 FISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1754
               + A LEFK  NG+A+RGR++FEG++S +PKR DL+++ LD E++ GD + IR LFER
Sbjct: 1701 TTLKFAQLEFKSPNGLAERGRTIFEGLISSFPKRVDLFNVLLDLELKQGDREQIRALFER 1760

Query: 1755 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
              S  L PK+ K+ FK++L +E++ G+E ++E VK +A E++ +
Sbjct: 1761 VFSGRLKPKQAKYFFKRWLAFEEAEGDERQVEAVKARAAEWIRA 1804



 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 211/834 (25%), Positives = 364/834 (43%), Gaps = 85/834 (10%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGL-------ARAADALDPILDNEIEANEDNL------- 48
           + G +  V+ + L + LP  L G        A+ ++ +  +L NE +  ED+        
Sbjct: 157 ILGQITAVSSRTLTVALPNNLVGYVPLTSISAQLSEKIQALL-NEKDEEEDSNDSGDEDD 215

Query: 49  ----LPTIFHVGQLVSCIVLQLDDDK---KEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 101
               L   FHVGQ +   V   + D    K   KR+I LS++ SL   G+    +  G  
Sbjct: 216 DDIALTNYFHVGQYLRVAVTSTEQDNTAGKAPTKRRIELSVQPSLTNVGIGRANLALGAT 275

Query: 102 LTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRK 158
           +   V SIEDHG +    L   +  GF+P++ L  +  +  +K G +    V  +  + +
Sbjct: 276 VQVAVSSIEDHGLVADLALEDQNVRGFIPKSQLPASLPLSSIKTGSVFLCSVIELGSSGR 335

Query: 159 VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 218
           VV LS+DP       T      S+D  +PG      V++  E G+    +     T D+ 
Sbjct: 336 VVKLSADPSKWIPLAT----APSVDTFLPGTKAEILVENKTEVGLSGKSMGLVDATADLV 391

Query: 219 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVG-------LTLNPYLLHNRAPPS 269
           H  +      +   Y   KK++ R++   P S  + +G       L + P    +  P  
Sbjct: 392 HSGSFRDKEAFLAKYEAGKKIHGRLICTFPLSETKKLGFSVLQHVLDMEPTANMDGRPEG 451

Query: 270 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 329
              +  I D + V+RV+ GLG+ L +    V       +SD   E + +    +K GS  
Sbjct: 452 TPALSSIVDAAPVIRVEPGLGIYLQLSPNTVGFAHVSRLSDDKVEMLSETSGPFKLGSEH 511

Query: 330 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQF 384
           + RI+ +  ++ L    L+    E     + DV  G +VK  +    +  D   G +V  
Sbjct: 512 KARIIEYNPVDDLYLVSLQKKVLEQSFLRYEDVPLGAIVKATIEKLLVGPDGVRGLVVNL 571

Query: 385 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
             G+  L P  H+S+ E+  P +KF+ G  +  RV+    + KRI +T KKTLV S    
Sbjct: 572 AEGISGLVPQIHLSDVELKHPERKFREGQTVTARVITTDPQKKRIRLTLKKTLVNSDQKP 631

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
              Y +      T G +TK++  G  VRFY  V+GF P SE+      + +  + VGQVV
Sbjct: 632 WLRYEDIESGDSTLGTLTKVDPLGAVVRFYGPVRGFLPVSEMSEAYIKDATEHFRVGQVV 691

Query: 503 KCRIMSSIPASRRINLSFM----MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
               +S  PA RR+ +S        P+  S    ++ G++V G V   + + +++ +   
Sbjct: 692 TVTAISVNPAERRLTVSCRDINKSNPSIESSLSSLEPGTIVKGTVFEKSQDDILLRL--- 748

Query: 559 GYSKGTIPTEHLA-DHLEHATVMK-----SVIKPGYEFDQLLVLD--NESSNLLLSAKYS 610
               G+     L  DH+   +  K     + I+ G + + ++VL    +   +++S K S
Sbjct: 749 ---DGSDAIARLTKDHVSDGSSKKRESAFNKIRVGQKLEDVVVLQVLPKRRLVMVSNKQS 805

Query: 611 LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK----AVDGQ 664
           LI +AQ+  L      + PN++V G+V NI   G FV F G ++G   +++    A D +
Sbjct: 806 LIKAAQEGTLLKSYEQLQPNALVTGFVSNITSDGVFVSFAGGISGLITKAQVPVEATDER 865

Query: 665 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS---TDASFMQEHFLLEEKIAM 721
              ++K   V   V S  +D    T R  L+++++  ++     A+ +Q+   L   +  
Sbjct: 866 DFGMTKFQPVTAKVLS--IDYKGATPRFWLTMRENPANTRPEPAAAAVQDVPALVNPV-- 921

Query: 722 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL 775
                   +ELK +    +G V + ++    D    ++ E   DV G I   ++
Sbjct: 922 -------DTELKTINDLSVGRVTKARIISVKD--TQINVELAKDVQGRIDASEI 966



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 159/360 (44%), Gaps = 28/360 (7%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 62
            W   V  ++E  L + +   +RG  RA D  D   D  + AN    L   F +G  +   
Sbjct: 1045 WLAFVNNISENGLWVNISPSVRGRIRATDVSD---DLSLAAN----LEKAFPIGSALKVH 1097

Query: 63   VLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 122
            VL +D +K  +      L+ R   L   L+++ V +G+VL   V  + D   ++      
Sbjct: 1098 VLAVDPEKNRLD-----LTARSDGLASSLTIKDVSKGLVLPGRVTRVTDRNILVQLS-DQ 1151

Query: 123  FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKD 176
              G +   ++A    E +    +   +L+  V  +D   K + LS+ P  V  S     D
Sbjct: 1152 AVGAVDLIDMADDYNEANPAKFQKNDILRVCVLKVDVPNKKIQLSTRPSKVLSSSMKVTD 1211

Query: 177  LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 236
             +  SI  L    +V   + ++ + GV ++     T  V + HL ++F    WK+ + + 
Sbjct: 1212 PEITSISQLSVNDVVRGFISNVSDKGVFVTLGHGVTAFVRVTHLSDSF-LKEWKDHFQRD 1270

Query: 237  KKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLGLL 292
            + V  +I+ +D  S  V ++L    L  + +AP +   + VGDI    KVV+V+   G+ 
Sbjct: 1271 QLVKGKIIMIDQASGHVQMSLKESALDPNYKAPLTFNDLHVGDIV-TGKVVKVE-PFGVF 1328

Query: 293  LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 352
            + + ++  +       S++AE+ V    K +KEG  V+ ++L     +      +KAS F
Sbjct: 1329 IAVDNSE-NVRGLCHRSEIAEKRVEDATKLFKEGDAVKAKVLKLDPAQRKVNFGMKASYF 1387



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 104/496 (20%), Positives = 206/496 (41%), Gaps = 76/496 (15%)

Query: 358  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVG 412
            T +D+  G V K ++I+V      V+    V+       +  E++ +K    P K+F   
Sbjct: 927  TINDLSVGRVTKARIISVKDTQINVELAKDVQGRIDASEIFDEWKDIKDRKRPLKQFSPK 986

Query: 413  AELVFRVLGVKSKR----ITVTH---KKTLVK------SKLAILSSYAEATDRLITHGW- 458
             EL  ++LG    R    + +TH   K T+ +      +  A  +S  + TD  +   W 
Sbjct: 987  QELTVKILGAHDTRNHRFLPLTHRNGKNTVFELSCKPSTVAAPNNSILKLTDLSVGSSWL 1046

Query: 459  --ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS--SMYHVGQVVKCRIMSSIPASR 514
              +  I ++G +V     V+G    +++  D     +    + +G  +K  +++  P   
Sbjct: 1047 AFVNNISENGLWVNISPSVRGRIRATDVSDDLSLAANLEKAFPIGSALKVHVLAVDPEKN 1106

Query: 515  RINLSFMMK--PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 572
            R++L+       + ++  D+ K G ++ G V  VT   ++V +  +    G +    +AD
Sbjct: 1107 RLDLTARSDGLASSLTIKDVSK-GLVLPGRVTRVTDRNILVQLSDQAV--GAVDLIDMAD 1163

Query: 573  HLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDA----- 622
                A   K      ++ + +L      +D  +  + LS + S + S+    +D      
Sbjct: 1164 DYNEANPAK------FQKNDILRVCVLKVDVPNKKIQLSTRPSKVLSSSMKVTDPEITSI 1217

Query: 623  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
            S +  N VV G++ N+ + G FV     +T F   +   D    +    +   Q V+  I
Sbjct: 1218 SQLSVNDVVRGFISNVSDKGVFVTLGHGVTAFVRVTHLSDSFLKEWKDHFQRDQLVKGKI 1277

Query: 683  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 742
            + ++  +G + +SLK+S     D ++         K  +  +  H            +G 
Sbjct: 1278 IMIDQASGHVQMSLKESAL---DPNY---------KAPLTFNDLH------------VGD 1313

Query: 743  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 795
            ++ GKV +   FGV ++ +   +V G     ++A   VE        G  ++A +L +  
Sbjct: 1314 IVTGKVVKVEPFGVFIAVDNSENVRGLCHRSEIAEKRVEDATKLFKEGDAVKAKVLKLDP 1373

Query: 796  AERLVDLSLK-TVFID 810
            A+R V+  +K + FID
Sbjct: 1374 AQRKVNFGMKASYFID 1389



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 145/694 (20%), Positives = 277/694 (39%), Gaps = 121/694 (17%)

Query: 740  IGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAGA----TVESGSVIQAAILDVA 794
            +G+ ++  V    D G+V     E  +V GFI   QL  +    ++++GSV   +++++ 
Sbjct: 272  LGATVQVAVSSIEDHGLVADLALEDQNVRGFIPKSQLPASLPLSSIKTGSVFLCSVIELG 331

Query: 795  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 854
             + R+V LS           A+ ++              L    +V+  +   K   LV 
Sbjct: 332  SSGRVVKLS-----------ADPSKWIP-----------LATAPSVDTFLPGTKAEILVE 369

Query: 855  SLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIAT-----------VMALPSSSTAGRL 903
            +  E   S     + D          F + ++ +A            +   P S T    
Sbjct: 370  NKTEVGLSGKSMGLVDATADLVHSGSFRDKEAFLAKYEAGKKIHGRLICTFPLSETKKLG 429

Query: 904  LLLLKAISETETSSSKRAKKKSSYDVGSLVQAE-ITEIKP-LELRLKFGIGFHGRIHITE 961
              +L+ + + E +++   + + +  + S+V A  +  ++P L + L+      G  H++ 
Sbjct: 430  FSVLQHVLDMEPTANMDGRPEGTPALSSIVDAAPVIRVEPGLGIYLQLSPNTVGFAHVSR 489

Query: 962  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1021
            ++DDK  ++      FK+G    ARII  +   D     L+ +S++  +L      S L 
Sbjct: 490  LSDDKVEMLSETSGPFKLGSEHKARIIEYNPVDD-----LYLVSLQKKVLE----QSFLR 540

Query: 1022 FEECDVSIGQRVTGYVYKV----DNEWALLT-----ISRHLKAQLFILDSAYEPSELQEF 1072
            +E  DV +G  V   + K+    D    L+      IS  L  Q+ + D      EL+  
Sbjct: 541  YE--DVPLGAIVKATIEKLLVGPDGVRGLVVNLAEGIS-GLVPQIHLSDV-----ELKHP 592

Query: 1073 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE----GDI 1128
            +R+F  G+ VT  V++ + +KK +RL L+        KT+ +++D      +E    GD 
Sbjct: 593  ERKFREGQTVTARVITTDPQKKRIRLTLK--------KTL-VNSDQKPWLRYEDIESGDS 643

Query: 1129 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1188
              G ++K+   +G +V   GP + G +  +E+    + D    +  GQ            
Sbjct: 644  TLGTLTKV-DPLGAVVRFYGP-VRGFLPVSEMSEAYIKDATEHFRVGQV----------- 690

Query: 1189 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1248
                   ++ T       E  L  S   ++ +N S               +  L P  IV
Sbjct: 691  -------VTVTAISVNPAERRLTVSCRDINKSNPS-----------IESSLSSLEPGTIV 732

Query: 1249 QGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR------VLS 1301
            +G V   +     + L      A++   ++SDG   S ++E    K+  G+      VL 
Sbjct: 733  KGTVFEKSQDDILLRLDGSDAIARLTKDHVSDG--SSKKRESAFNKIRVGQKLEDVVVLQ 790

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            V P  + V V+ K S  + A +   + +   L    +V G +  + S G+F++     + 
Sbjct: 791  VLPKRRLVMVSNKQSLIKAAQEGTLLKSYEQLQPNALVTGFVSNITSDGVFVSFAG-GIS 849

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1394
            GL   +++  +  D  +      + V  K+L +D
Sbjct: 850  GLITKAQVPVEATDERDFGMTKFQPVTAKVLSID 883


>gi|261204755|ref|XP_002629591.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis SLH14081]
 gi|239587376|gb|EEQ70019.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis SLH14081]
          Length = 1817

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 389/1438 (27%), Positives = 694/1438 (48%), Gaps = 200/1438 (13%)

Query: 459  ITKIEKH-GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASR 514
            +TK+E   G +V+F +   GFA  S L    +D        Y V    + RI+     S 
Sbjct: 478  VTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEARIVG---FSA 534

Query: 515  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 565
              NL  +    +V +   ++L     G++V G ++  ++  + +  ++  +A G S G +
Sbjct: 535  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLIVSLADGIS-GLV 593

Query: 566  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 623
               H++D  L+H    +   + G +   ++L ++ +   L L+ K SL+NS      D +
Sbjct: 594  AGMHMSDTKLQHP---EKKFREGAQVSARILSVNLDKRQLRLTLKKSLLNSESPAWKDYN 650

Query: 624  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + VGQ V  + L
Sbjct: 651  GILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNVGQVVNVHAL 710

Query: 684  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 743
            +V+ E  ++ +S K        +SF + +    E I       H G     V G +    
Sbjct: 711  NVDVELRKLVVSCKDP------SSFTEAYKSAFENI-------HPGDT---VSGTVFEKS 754

Query: 744  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDL 802
             E  + +  D G+V          G  + + +A A +  G  + +  IL++ KA RL+ +
Sbjct: 755  SEDILLKLEDTGLVARLNAEHVADGQTSRNGVALARIRVGQKLNELLILNIQKAHRLIKV 814

Query: 803  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 862
            + K           S +QA+++       +DL     V   V+ +  + + +   E+   
Sbjct: 815  TNKP----------SLKQARQRGELPARFEDLKEGAKVTGFVKNITVDGMFV---EFLGG 861

Query: 863  I-GYAS---VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 918
            I G+A    V D +  K P   +   Q +  +V ++       R +L +K     + +S 
Sbjct: 862  ITGFAPKRLVDDDHVNK-PDFGYFLSQPISLSVESIEDDRQ--RFILRMKEQVNKQRASD 918

Query: 919  -----------------KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 961
                             +  K       G + +A++  +K  ++ ++      GRI ++E
Sbjct: 919  GVKPANNVNQSSINPIDENIKSLDDLTFGRVTKAKVVSVKETQINVQLAENIQGRIDVSE 978

Query: 962  VND--DKSNVVENLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWELSIKPSM 1010
            V D  D     +     FK  Q +  R++    A+S+K  P   +S    ++ELS KPS 
Sbjct: 979  VFDSWDAIKDRKQPLKYFKAKQIIPVRVLGIHDARSHKFLPISHRSGKYPVFELSAKPSS 1038

Query: 1011 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1070
            L  +++    L +   V IG    G+V  + ++   + IS +++ +L   D + + S + 
Sbjct: 1039 LQSTDLEPLSLDK---VKIGSSWVGFVNNIGDDCLWINISPNVRGRLRFTDLSDDLSLVG 1095

Query: 1071 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----PFQDGISDKTVDISNDNMQTFIHEG 1126
            +  + F +G A+  HV  ++ +K  L L  R    P +  ISD            F+ +G
Sbjct: 1096 DIAKNFPVGSALKIHVTGVDADKNRLDLSARHGGLPNRKSISD------------FL-KG 1142

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            +I+ GR++++       +VQ+     G ++  ++ +          D  + +P + + + 
Sbjct: 1143 EILLGRVTRVTERQA--LVQLSNSTVGAINLIDMAD----------DFSKVNP-ADFHKN 1189

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            + ++  +++I    +    + LS+R S           LS+ +      +  I  L  N 
Sbjct: 1190 EVIRVCIIDIDVPNK---KILLSVRPS---------RVLSSSLPIQDPEINSISQLKVND 1237

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            IV+G+V+ V + G F+ L   + A + +S+LSD Y++  + EF + +LV GR++  +  S
Sbjct: 1238 IVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQNEFQVDQLVRGRIILADAES 1297

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHV 1365
             +++++LK S      ++ I  + +L  G IV G+++ VE +G FI I+ T NL GLCH 
Sbjct: 1298 NKLQMSLKESVLEPNYKTPIT-IKDLKRGQIVTGKVRNVEEFGAFIVIDGTANLSGLCHR 1356

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1425
            +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+       S +E +D
Sbjct: 1357 TEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERISLGLKASYFKD-------SDDESND 1409

Query: 1426 EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM 1485
            E+ ++V   N S   ++       MD+E E G  + +  ++   ++     N DD + D 
Sbjct: 1410 ESADDVSEENVSESEDDGG-----MDLELESGDDISMGGVDMEDAI-----NGDDSESDA 1459

Query: 1486 DNGISQNQGHTDEA------------------------KTIDEKNNRHAKKKEKEEREQE 1521
             +   Q  G  D A                         +  E +N+   KK++  R+ E
Sbjct: 1460 SDEDVQMAGTEDPAVKGGLVTSGFDWNGNTTTGAGEGNDSGSESDNQTVTKKKR--RKPE 1517

Query: 1522 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1581
            I+      L+ + P++  ++ERL+   P+SS +W+KYMAF L +++V+KAR IAERAL++
Sbjct: 1518 IQVDRTGDLDANGPQSIADYERLLLGEPDSSLLWLKYMAFQLELSEVDKAREIAERALRS 1577

Query: 1582 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1641
            I+I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ +
Sbjct: 1578 ISIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGK 1635

Query: 1642 NKLADELLYKMI-KKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFI 1698
            N  ADEL    + KKF  S  ++L     L     + E  +A++ RA+ +LP H H+   
Sbjct: 1636 NDKADELFQATLKKKFTQSPNIYLNFATFLFDTLAEPERARALLPRAIQALPAHTHVDIT 1695

Query: 1699 SQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1756
            S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI+ G+V+ +R LFER +
Sbjct: 1696 SKFGQLEFRSPNGDIERGRTIFEGLLSSFPKRVDLWNVLLDLEIKSGEVEQVRRLFERVL 1755

Query: 1757 SLS--------------LPPKKMKFLFKKYLEYEKSVGE--EERIEYVKQKAMEYVES 1798
             L               L  K+ KF FKK+L +E+  G+  E+ ++ VK +A EYV++
Sbjct: 1756 GLGHGIAADGTKTVSKKLKDKQAKFFFKKWLTFEEKAGDGNEKMVDEVKARAAEYVKA 1813



 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 181/749 (24%), Positives = 318/749 (42%), Gaps = 54/749 (7%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNLLP-------- 50
           K+ G V+ +N  D+ + LP  L G   +   +  L   ++N +++N++            
Sbjct: 163 KVLGQVSSINAHDIGLSLPNNLTGYIPITAVSRTLQQKIENLLKSNQEENDNSDDDEEEE 222

Query: 51  ------TIFHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 101
                 + F +GQ +   VL  + +    K  GK+ I LS+       GLS   +     
Sbjct: 223 EDLDLNSYFKLGQYLRASVLSTETEVNHGKTKGKKHIRLSVDPREANSGLSKSDLVVNAT 282

Query: 102 LTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRK 158
           + A V S+EDHG ++  GL      GF+    +  +  +  +K G +   VV   +    
Sbjct: 283 VQASVLSVEDHGLVMDLGLQDGQTKGFMSSKEIPHDLEVSQIKEGSVFLCVVTGHNADGS 342

Query: 159 VVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
           VV LS++  T              +I+  +PG      +  +   G+    +      VD
Sbjct: 343 VVKLSANLPTAGSIKKSHFLTSAPTINSFLPGTAAEILLTEVTSTGMAGKIMGMLNAVVD 402

Query: 217 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN---------PYLLHNRAP 267
           +     T    +    Y+   K+  R++   PT   + L  +         P +L  +  
Sbjct: 403 LVQSGTTTGKEDITTKYHVGAKIKGRLICTFPTVEPMKLGFSILDHVVKFTPTVLEQKPS 462

Query: 268 PSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 326
                 +  I  + KV +V+ GLG+ +              +SD   + +   +  YK  
Sbjct: 463 SEDTPAISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVD 522

Query: 327 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAI 381
           S    RI+GF  L+ L    L+    +       DV  G VV+GK+    I  D   G I
Sbjct: 523 STHEARIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLI 582

Query: 382 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSK 439
           V    G+  L    HMS+ ++  P KKF+ GA++  R+L V    +++ +T KK+L+ S+
Sbjct: 583 VSLADGISGLVAGMHMSDTKLQHPEKKFREGAQVSARILSVNLDKRQLRLTLKKSLLNSE 642

Query: 440 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 499
                 Y        + G I  I+ HG  V+FY  V+GF P SE+      +P+  ++VG
Sbjct: 643 SPAWKDYNGILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNVG 702

Query: 500 QVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVY 554
           QVV    ++     R++ +S    P+  +E      + +  G  VSG V   +   +++ 
Sbjct: 703 QVVNVHALNVDVELRKLVVS-CKDPSSFTEAYKSAFENIHPGDTVSGTVFEKSSEDILLK 761

Query: 555 VIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSL 611
           +   G     +  EH+AD       V  + I+ G + ++LL+L+ + ++ L+  + K SL
Sbjct: 762 LEDTGLV-ARLNAEHVADGQTSRNGVALARIRVGQKLNELLILNIQKAHRLIKVTNKPSL 820

Query: 612 INSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 669
             + Q  +LP+    +   + V G+V NI   G FV FLG +TGFAP+    D       
Sbjct: 821 KQARQRGELPARFEDLKEGAKVTGFVKNITVDGMFVEFLGGITGFAPKRLVDDDHVNKPD 880

Query: 670 KTYYVGQSVRSNILDVNSETGRITLSLKQ 698
             Y++ Q +  ++  +  +  R  L +K+
Sbjct: 881 FGYFLSQPISLSVESIEDDRQRFILRMKE 909



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 106/497 (21%), Positives = 200/497 (40%), Gaps = 72/497 (14%)

Query: 361  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVGAEL 415
            D+  G V K KV++V      VQ    ++    +  +   ++ +K    P K FK    +
Sbjct: 943  DLTFGRVTKAKVVSVKETQINVQLAENIQGRIDVSEVFDSWDAIKDRKQPLKYFKAKQII 1002

Query: 416  VFRVLGVKSKR----ITVTHKKTLVKS-KLAILSSYAEATDR--------LITHGWITKI 462
              RVLG+   R    + ++H+       +L+   S  ++TD          I   W+  +
Sbjct: 1003 PVRVLGIHDARSHKFLPISHRSGKYPVFELSAKPSSLQSTDLEPLSLDKVKIGSSWVGFV 1062

Query: 463  EKHG--C-FVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIMSSIPASRRIN 517
               G  C ++     V+G    ++L  D     + +  + VG  +K  +        R++
Sbjct: 1063 NNIGDDCLWINISPNVRGRLRFTDLSDDLSLVGDIAKNFPVGSALKIHVTGVDADKNRLD 1122

Query: 518  LSFMMK--PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
            LS      P R S  D +K G ++ G V  VT    +V +     S  T+   +L D  +
Sbjct: 1123 LSARHGGLPNRKSISDFLK-GEILLGRVTRVTERQALVQL-----SNSTVGAINLIDMAD 1176

Query: 576  HATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQLP------SDASHIHP 627
              + +        E  ++ ++D +  N  +LLS + S + S+  LP      +  S +  
Sbjct: 1177 DFSKVNPADFHKNEVIRVCIIDIDVPNKKILLSVRPSRVLSSS-LPIQDPEINSISQLKV 1235

Query: 628  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
            N +V G+V  +   G FV     +T +   S   D    +    + V Q VR  I+  ++
Sbjct: 1236 NDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQNEFQVDQLVRGRIILADA 1295

Query: 688  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 747
            E+ ++ +SLK+S         ++ ++     I  L+                 G ++ GK
Sbjct: 1296 ESNKLQMSLKESV--------LEPNYKTPITIKDLKR----------------GQIVTGK 1331

Query: 748  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLV 800
            V    +FG  +  +  +++ G     ++A   VE        G +++A I+ +   +  +
Sbjct: 1332 VRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERI 1391

Query: 801  DLSLK-TVFIDRFREAN 816
             L LK + F D   E+N
Sbjct: 1392 SLGLKASYFKDSDDESN 1408



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 107/534 (20%), Positives = 223/534 (41%), Gaps = 75/534 (14%)

Query: 922  KKKSSYDVGSLV----QAEITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 976
            +K SS D  ++     + ++T+++P L + ++F    +G  HI+ ++D+K + +      
Sbjct: 459  QKPSSEDTPAISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGP 518

Query: 977  FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1036
            +K+  T  ARI+  S   +     L+ LS++  ++       +      DV++G  V G 
Sbjct: 519  YKVDSTHEARIVGFSALDN-----LYLLSLERKVI------DQPFLRLEDVTVGAVVRGK 567

Query: 1037 VYKV---DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1093
            + K+    +  + L +S        +       ++LQ  +++F  G  V+  +LS+N +K
Sbjct: 568  IEKLLIGTDGISGLIVSLADGISGLVAGMHMSDTKLQHPEKKFREGAQVSARILSVNLDK 627

Query: 1094 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1153
            + LRL L+            + N     +     I+ G  S       G ++ I  H   
Sbjct: 628  RQLRLTLKK----------SLLNSESPAWKDYNGILPGNQSP------GTIISIQSHGAI 671

Query: 1154 RVHFTELKNICVSDPLSGYDEGQF-DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1212
               + E++      P+S   E    DP   ++ GQ V    L          +V++ LR 
Sbjct: 672  VQFYGEVRGFL---PVSEMSEAYIKDPAQHFNVGQVVNVHAL----------NVDVELRK 718

Query: 1213 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SRKLDAK 1271
             +  +S  + S  +        +    E++ P   V G V   +S+   + L    L A+
Sbjct: 719  LV--VSCKDPSSFTE------AYKSAFENIHPGDTVSGTVFEKSSEDILLKLEDTGLVAR 770

Query: 1272 VLLSNLSDGYVESPEKEFPIGKLVAGR------VLSVEPLSKRVEVTLKTSDSRTASQSE 1325
            +   +++DG  ++      + ++  G+      +L+++   + ++VT K S  +   + E
Sbjct: 771  LNAEHVADG--QTSRNGVALARIRVGQKLNELLILNIQKAHRLIKVTNKPSLKQARQRGE 828

Query: 1326 I-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
            +     +L  G  V G +K +   G+F+      + G      + +DHV+  +  Y   +
Sbjct: 829  LPARFEDLKEGAKVTGFVKNITVDGMFVEFLG-GITGFAPKRLVDDDHVNKPDFGYFLSQ 887

Query: 1385 KVKVKILKVDKEKRRISLGMKSSYFKN-------DADNLQMSSEEESDEAIEEV 1431
             + + +  ++ +++R  L MK    K         A+N+  SS    DE I+ +
Sbjct: 888  PISLSVESIEDDRQRFILRMKEQVNKQRASDGVKPANNVNQSSINPIDENIKSL 941



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 116/251 (46%), Gaps = 30/251 (11%)

Query: 181  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
            SI   + G ++  RV  + E   ++       G +++  + + F   N   D+++++ + 
Sbjct: 1135 SISDFLKGEILLGRVTRVTERQALVQLSNSTVGAINLIDMADDFSKVN-PADFHKNEVIR 1193

Query: 241  ARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGLG 290
              I+ +D  ++ + L++ P  + + + P         S +KV DI  +  V RV + GL 
Sbjct: 1194 VCIIDIDVPNKKILLSVRPSRVLSSSLPIQDPEINSISQLKVNDIV-RGFVRRVANNGLF 1252

Query: 291  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
            + L    T     AY+ ISD+++  +++ + +++    VR RI+    L    +  L+ S
Sbjct: 1253 VTLGHDVT-----AYIRISDLSDSYLKEWQNEFQVDQLVRGRII----LADAESNKLQMS 1303

Query: 351  AFEGLV-------FTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFE 401
              E ++        T  D+K G +V GKV  V+ FGA +   G   +  LC    M+E +
Sbjct: 1304 LKESVLEPNYKTPITIKDLKRGQIVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGK 1363

Query: 402  IVKPGKKFKVG 412
            +    K F+ G
Sbjct: 1364 VEDARKVFEKG 1374


>gi|296423848|ref|XP_002841464.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637704|emb|CAZ85655.1| unnamed protein product [Tuber melanosporum]
          Length = 1787

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 398/1504 (26%), Positives = 716/1504 (47%), Gaps = 187/1504 (12%)

Query: 377  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLV 436
            + G + +  G V A     H S +       KFKVG ++  RV+       T      L 
Sbjct: 386  AVGIVGKVMGLVDATMDFFHASGWREKDIESKFKVGEKIKARVIA------TYAEPHKLA 439

Query: 437  KSKLAILSSYAEA----------TDRLITHGWITKIE-KHGCFVRF-YNGVQGFAPRSEL 484
             S L  + S+             T  +I    I  IE K G  +     GV GF   S +
Sbjct: 440  LSILPHVLSFTRPIENEPTTILPTSTIINSAKILNIEPKTGLSLDVGVPGVPGFVHISRV 499

Query: 485  GLDPGCE----PSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTRVSEDDLVKLG 536
              D   E     S ++  G V   RI+  +S+     +++    + +P    ED  +K+G
Sbjct: 500  SSDSRIEVLSKDSGLHQTGSVHMARIIGYNSMDGLYLVSMEQKVLDQPFLRVED--IKIG 557

Query: 537  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLL 594
             +V G ++ V  +  V+  +A+G + G +   HL+D  L+H    +   + G E   ++L
Sbjct: 558  EVVKGTINRVLDSGRVIVSLAEGIT-GIVDELHLSDIKLKHP---EKKFREGIEVKARVL 613

Query: 595  VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            + D     ++L+ K +++NS   + S        +   G +  I+ +G  V+F   + GF
Sbjct: 614  LTDPSKRKVMLTLKKAIVNSDAPIISSYEDTSSGTRSVGTLVKILPSGAVVKFFSDVCGF 673

Query: 655  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 714
             P S+  +    D  + + VGQSV  ++L V+    ++ +S +          F + H  
Sbjct: 674  LPISEMSEAYIQDPHEHFTVGQSVNVHVLSVDPTNQKLRVSCRDPNL------FGEVH-- 725

Query: 715  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE--SNDFGVVVSFEEHSDVYGFITH 772
               K+A+ +                 G V+ G V E  ++D  V ++      + G +  
Sbjct: 726  ---KVALAK--------------LPPGDVVSGTVVEKSADDLIVEINGLGAEGIRGVLVI 768

Query: 773  HQLAGATVE----------SGSVIQAA-ILDVAKAERLVDLSLKTVFIDRFREANSNRQA 821
             QL   + E          +G  +    +L+  +  R + LS+K   +          +A
Sbjct: 769  GQLTDGSREKSLGVFKKLRAGQKLDGLLVLEKHEERRSITLSMKPSLV----------KA 818

Query: 822  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQF 881
             K+ R     +D+   + V   V     + L +        + Y        Q  P   F
Sbjct: 819  AKRGRMISKFEDVNEGERVKGWVRNTTLHGLFVGFAGGIVGVVYKRDLPAEVQSLPNFGF 878

Query: 882  LNGQSVIATVMALPSSSTAGRLLL-------LLKAISETETSSSK--------RAKKKSS 926
            +  QS+   V+ +  S    RL L        + A++ T  +S +        R K    
Sbjct: 879  VKNQSITGRVVYIDPSERRFRLSLNSAKSEEKVSAVANTAGNSERLTVNPVDARFKLIDD 938

Query: 927  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVT 984
            Y  G L +A++  I+  +L +K      GRI ++ V +  D     ++  + FK G  + 
Sbjct: 939  YTPGKLTKAKVVSIQETQLNVKLADNVQGRIDVSLVFETWDAIKDKKSPLALFKKGDVLD 998

Query: 985  ARII-----------AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1033
            A++I           A +++    K+ ++ELS KPS +    I   +   E D++     
Sbjct: 999  AKVIGIHDARNHRFLAITHQKSNTKTPIFELSAKPSHIKEEGIEGCITKLE-DITPNSTW 1057

Query: 1034 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1093
              ++  +  E A   I   ++ ++ ILD +   ++L+  Q+ F +G A+   VL ++ E 
Sbjct: 1058 VTFLNNISEECAWANIMPDIRGRIRILDLSDNVAQLKTLQKSFPVGCALKCQVLRVDSEH 1117

Query: 1094 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1153
              L L  R      S  +  ++ D +     +G +V GR++K+      ++VQI   + G
Sbjct: 1118 SKLDLSAR------SPSSSALTFDKLA----KGMVVPGRVTKVTDR--QVLVQISESVSG 1165

Query: 1154 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1213
             +  T+L     +D  S  +       +GY + + ++  +++I    +    V LS R S
Sbjct: 1166 PISLTDL-----ADDFSQAN------TNGYSKNEVIRVCIIDIDSPNK---RVTLSARPS 1211

Query: 1214 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1273
               +S         D+      ++ I ++    I +G+VK V+ KG F+ +   + A   
Sbjct: 1212 RVMIS---------DLPVKDPEIQAIVNVKVGDIRRGFVKQVSPKGLFVTIGGNVTAWTK 1262

Query: 1274 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1333
            +S+LSDG+++  E  F +G+LV G++++V+     V+++L+ SD     + +  + S+L 
Sbjct: 1263 ISDLSDGFLKEWEGLFTVGQLVKGKIMAVDSTLGHVQMSLRESDISGKEKPKPADYSSLK 1322

Query: 1334 VGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1392
             G IV G++K +  YG+FI+++ + N+ GLCH S++++  +D+I  +Y  G+ VK KI+ 
Sbjct: 1323 EGQIVKGKVKNIAEYGVFISVDGSQNISGLCHKSQIADSAIDDISKLYATGDPVKAKIIS 1382

Query: 1393 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM 1452
            +D EK+RIS G+KSSYFK++       SE+ES++  E  G  + S++     +   D D 
Sbjct: 1383 IDLEKKRISFGLKSSYFKDEV------SEDESEDGSESEGGADLSAVKVCLGLFWIDADG 1436

Query: 1453 ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTI--------DE 1504
            ES+        + E     P +E+N      D       + G  D + +I        D 
Sbjct: 1437 ESD--------EREQEQEEPSVEMN------DAPTSEGLSTGGFDWSASILDKRGPDTDS 1482

Query: 1505 KNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAF 1561
            + + ++++++ ++++++    +E L    A R P    +FERL+   PN S +WI YM+F
Sbjct: 1483 EGDSNSEEEKHKKKKRKKAQIKEDLTGNLATREPQSVADFERLLLGDPNDSKLWIMYMSF 1542

Query: 1562 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1621
             L +++VEKAR IAERA++TI +REE+EK N+W+A  N+E+ YG   +E + + F+RA Q
Sbjct: 1543 ELQLSEVEKARGIAERAIKTIALREESEKQNVWIAMLNMESMYGT--DETLEEAFKRACQ 1600

Query: 1622 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL--KQQQEGVQ 1679
            Y + + +H  L  +Y +T + + AD+L   MIKKF    K+W+     LL  KQ  +  +
Sbjct: 1601 YNEAQGMHEKLASIYIQTSKTEKADDLFKVMIKKFSQDPKIWVNYADFLLSSKQSCDAAR 1660

Query: 1680 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1739
            A++QRA+ +LP+ +H   IS+ A LEF++G  +RGR++FE +L+ + K++DL++++LD E
Sbjct: 1661 ALLQRAMQALPQSQHKDLISKFAKLEFRSGDPERGRTLFENLLATFKKKSDLYNMFLDME 1720

Query: 1740 IRLGDVDL-----IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794
            I+ G  +      +R LF+RA++     ++ K LFKK+LE+EKS G+++  E V +KA E
Sbjct: 1721 IKYGSEEEDGKEGVRALFKRALAEKTSTRQAKALFKKWLEFEKSKGDKKSTETVTRKAKE 1780

Query: 1795 YVES 1798
            YVE+
Sbjct: 1781 YVEA 1784



 Score =  204 bits (518), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 304/1339 (22%), Positives = 569/1339 (42%), Gaps = 177/1339 (13%)

Query: 5    GVVAEVNEKDLVICLPGGLRG----------LARAADAL-------------DPILDNEI 41
            G ++++N+ DL + LP  L G          L +  +AL             + I   + 
Sbjct: 145  GCISQINQTDLALSLPNNLTGFVPLTSISESLNKRVEALVRDSDDDEDEDVEEKIGTAKS 204

Query: 42   EANEDNL-LPTIFHVGQLVSCIVL---QLDDDKKEIG----KRKIWLSLRLSLLYKGLSL 93
            E++ED++ L  +F +GQ +   V+   +L + K   G    K++I LSL   +   GL+ 
Sbjct: 205  ESSEDDVDLKAMFQIGQYLRAYVVSSSELANSKSPSGSKKIKKRIELSLDPVMANNGLTT 264

Query: 94   ETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGI-DVKPGLLLQGVVR 151
              +  G  + A V S+EDHG +++ G+ +   GFL    L +   + D K G ++     
Sbjct: 265  TELVVGCTVQASVTSVEDHGLVMNLGIGNDLKGFLSSKELGKGRSVTDAKEGQVMLCTTI 324

Query: 152  SIDRTRKVVYLSSDPDTVSKCVTKDLKG---------ISIDLLVPGMMVSTRVQSILEN- 201
             +    K+V LS D +       K   G          ++D  +PG  V   +  I +  
Sbjct: 325  GLSSNGKIVKLSGDLEQKPSKKGKYSGGKAAWWLSSAPTVDTFLPGTGVEVLITDIAKGS 384

Query: 202  ---GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 258
               G++   +     T+D FH    +   + ++ +   +K+ AR++        + L++ 
Sbjct: 385  KAVGIVGKVMGLVDATMDFFHASG-WREKDIESKFKVGEKIKARVIATYAEPHKLALSIL 443

Query: 259  PYLLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
            P++L         P + +    I + +K++ ++   GL LD+    V  P +V IS V+ 
Sbjct: 444  PHVLSFTRPIENEPTTILPTSTIINSAKILNIEPKTGLSLDVGVPGV--PGFVHISRVSS 501

Query: 314  ----EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 369
                E + K    ++ GS    RI+G+  ++GL    ++    +       D+K G VVK
Sbjct: 502  DSRIEVLSKDSGLHQTGSVHMARIIGYNSMDGLYLVSMEQKVLDQPFLRVEDIKIGEVVK 561

Query: 370  GKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKR 426
            G +  V DS   IV    G+  +    H+S+ ++  P KKF+ G E+  RVL      ++
Sbjct: 562  GTINRVLDSGRVIVSLAEGITGIVDELHLSDIKLKHPEKKFREGIEVKARVLLTDPSKRK 621

Query: 427  ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 486
            + +T KK +V S   I+SSY + +    + G + KI   G  V+F++ V GF P SE+  
Sbjct: 622  VMLTLKKAIVNSDAPIISSYEDTSSGTRSVGTLVKILPSGAVVKFFSDVCGFLPISEMSE 681

Query: 487  DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSG 541
                +P   + VGQ V   ++S  P ++++ +S    P    E   V L     G +VSG
Sbjct: 682  AYIQDPHEHFTVGQSVNVHVLSVDPTNQKLRVS-CRDPNLFGEVHKVALAKLPPGDVVSG 740

Query: 542  VVDVVTPNAVVVYVIAKGYS--KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDN 598
             V   + + ++V +   G    +G +    L D   E +  +   ++ G + D LLVL+ 
Sbjct: 741  TVVEKSADDLIVEINGLGAEGIRGVLVIGQLTDGSREKSLGVFKKLRAGQKLDGLLVLEK 800

Query: 599  --ESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
              E  ++ LS K SL+ +A+  ++ S    ++    V G+V N    G FV F G + G 
Sbjct: 801  HEERRSITLSMKPSLVKAAKRGRMISKFEDVNEGERVKGWVRNTTLHGLFVGFAGGIVGV 860

Query: 655  APRSKAVDGQRADLSKTYYV-GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 713
              + + +  +   L    +V  QS+   ++ ++    R  LSL  +              
Sbjct: 861  VYK-RDLPAEVQSLPNFGFVKNQSITGRVVYIDPSERRFRLSLNSAKS------------ 907

Query: 714  LLEEKIAMLQSSKHNGSEL---------KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 764
              EEK++ + ++  N   L         K ++ +  G + + KV    +  + V   ++ 
Sbjct: 908  --EEKVSAVANTAGNSERLTVNPVDARFKLIDDYTPGKLTKAKVVSIQETQLNVKLADNV 965

Query: 765  ----------DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRF 812
                      + +  I   +   A  + G V+ A ++ +  A+  R + ++         
Sbjct: 966  QGRIDVSLVFETWDAIKDKKSPLALFKKGDVLDAKVIGIHDARNHRFLAIT--------H 1017

Query: 813  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV---- 868
            +++N+     +   K    K+ G+   +  + +I   +  V  L   +    +A++    
Sbjct: 1018 QKSNTKTPIFELSAKPSHIKEEGIEGCITKLEDITPNSTWVTFLNNISEECAWANIMPDI 1077

Query: 869  ---------SDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 918
                     SD   Q K  QK F  G ++   V+ + S  +  +L L  ++ S +  +  
Sbjct: 1078 RGRIRILDLSDNVAQLKTLQKSFPVGCALKCQVLRVDSEHS--KLDLSARSPSSSALTFD 1135

Query: 919  KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 978
            K AK       G +V   +T++   ++ ++      G I +T++ DD S    N +S  +
Sbjct: 1136 KLAK-------GMVVPGRVTKVTDRQVLVQISESVSGPISLTDLADDFSQANTNGYSKNE 1188

Query: 979  IGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK--LLFEECDVSIGQRVTGY 1036
            + +     I    + P+ + +    LS +PS + +S++  K   +    +V +G    G+
Sbjct: 1189 VIRVCIIDI----DSPNKRVT----LSARPSRVMISDLPVKDPEIQAIVNVKVGDIRRGF 1240

Query: 1037 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1096
            V +V  +   +TI  ++ A   I D       L+E++  F +G+ V G +++++     +
Sbjct: 1241 VKQVSPKGLFVTIGGNVTAWTKISD--LSDGFLKEWEGLFTVGQLVKGKIMAVDSTLGHV 1298

Query: 1097 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1156
            ++ LR  +  IS K      D   + + EG IV G++  I      + V    ++ G  H
Sbjct: 1299 QMSLR--ESDISGKEKPKPAD--YSSLKEGQIVKGKVKNIAEYGVFISVDGSQNISGLCH 1354

Query: 1157 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV----LEISRTVRGT----FHVEL 1208
             +++ +  + D    Y  G  DP         VK K+    LE  R   G     F  E+
Sbjct: 1355 KSQIADSAIDDISKLYATG--DP---------VKAKIISIDLEKKRISFGLKSSYFKDEV 1403

Query: 1209 SLRSSLDGMSSTNSSDLST 1227
            S   S DG  S   +DLS 
Sbjct: 1404 SEDESEDGSESEGGADLSA 1422


>gi|349580519|dbj|GAA25679.1| K7_Rrp5p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1729

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 382/1314 (29%), Positives = 630/1314 (47%), Gaps = 193/1314 (14%)

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 614
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISDT--RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 615  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 729  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 782
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVDVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 783  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 838  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 892
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 893  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 942
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 943  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 993
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 994  --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1051
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1052 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1171 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1339
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1340 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1398
            G I+ V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK+
Sbjct: 1270 GTIRNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329

Query: 1399 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1458
            +ISL +K+S+F  +A   +++S   +    ++V   +   ++ ++     D D ES+ G 
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTTDQVEKEDEDEVMADA--GFNDSDSESDIGD 1384

Query: 1459 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1515
                               + D +P+   +G+S + G    A  +D+        +++  
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429

Query: 1516 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1566
              E ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489

Query: 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626
            ++EKAR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D  
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547

Query: 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1684
             +H  LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607

Query: 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
            AL +LP+  HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667

Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
               +  LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  177 bits (449), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 289/1264 (22%), Positives = 541/1264 (42%), Gaps = 188/1264 (14%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRG---------------------LARAADALD----PIL 37
            L G ++ + ++DL I    G+ G                     +    DA D     + 
Sbjct: 122  LLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAADEKKSKVE 181

Query: 38   DNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLR 83
            D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K++I L++ 
Sbjct: 182  DAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELTIE 241

Query: 84   LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 143
             S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +      +   PG
Sbjct: 242  PSSVNTYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKL--LPG 298

Query: 144  LLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
             +  G + +  DR+   + +++D    S    K  +  SID ++PG +V    +SI +NG
Sbjct: 299  AVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLLCESITKNG 352

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            +        +G V++ HL+ TF   + K+ +     +  RI+                 L
Sbjct: 353  IAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAIGSSIRCRII---------------ACL 396

Query: 263  HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------STPAYVTIS 309
             N+   S  KV  + +   +++++  L     + + P+             S   Y+ + 
Sbjct: 397  ENK---SGDKVLILSNLPHILKLEDALKSTEGLDAFPIGYTFESCSIKGRDSEYLYLALD 453

Query: 310  D-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
            D     V    V ++E      S    R+LG+  ++ +          +      +D+  
Sbjct: 454  DDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPI 509

Query: 365  G-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G+++  RV+ V
Sbjct: 510  GELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISV 569

Query: 423  KSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNG 474
             S+  + VT KK+LV    ++L ++S+Y  A +       T   +   + +GC + F+ G
Sbjct: 570  NSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGG 629

Query: 475  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
            + GF P SE+       P     +GQ V  +++      RRI     +   +VS +   +
Sbjct: 630  LSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRI-----IATCKVSNEQAAQ 684

Query: 535  ----LGSLVSG----VVDVV--TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSV 583
                + ++V G     VDV+  T ++V+V +   G  +G I   HL+D  +E        
Sbjct: 685  QKDTIENIVPGRTIITVDVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQLKK 743

Query: 584  IKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCN 637
            ++ G E   L++  D  +    +S K SLI  A++  LP    D   ++ +  +H Y+ +
Sbjct: 744  LRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKS 803

Query: 638  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            I + G FV F G+  G    S AVD +  D+SK +Y+ QSV   +L  + +  +  LSLK
Sbjct: 804  ISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLK 863

Query: 698  QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFG 755
                             +E+ +          S +K  +   IGS+++ K+   + N   
Sbjct: 864  APKVKEEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKSVKKNQLN 911

Query: 756  VVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVDLSL 804
            V+++   H         D Y  IT  +   +  +   VI+  I+   DV K+ + + ++ 
Sbjct: 912  VILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLPITH 970

Query: 805  KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSI 863
            K         +    + + K+   ++ +++ + Q +   V     N+L L++ P     I
Sbjct: 971  KISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLKARI 1030

Query: 864  GYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSKRAK 922
                ++D N   F +    N +SV     AL    ++  R    + AI ++    +    
Sbjct: 1031 SLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN---- 1081

Query: 923  KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 982
              S+  VG  +   + +I    + L  G    G   IT+  +D S  ++  F + KI   
Sbjct: 1082 -MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KINNV 1139

Query: 983  VTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1040
            +   +++  + NK         ELS++ +      I S       D+  G+ V G V  V
Sbjct: 1140 IPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS-----HEDLKQGEIVDGIVKNV 1187

Query: 1041 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1100
            +++   + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++ + + L L
Sbjct: 1188 NDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-ISLTL 1244

Query: 1101 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFT 1158
            R  +     K +   +D     I  GD+  G I  +     G+ V++    ++ G  H T
Sbjct: 1245 RESEINGDLKVLKTYSD-----IKAGDVFEGTIRNVTD--FGVFVKLDNTVNVTGLAHIT 1297

Query: 1159 ELKN 1162
            E+ +
Sbjct: 1298 EIAD 1301



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 37/330 (11%)

Query: 92   SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 144
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 260
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L   
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRSA 1161

Query: 261  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 318
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 319  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 375
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIRNV 1275

Query: 376  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|259148814|emb|CAY82059.1| Rrp5p [Saccharomyces cerevisiae EC1118]
 gi|323353170|gb|EGA85470.1| Rrp5p [Saccharomyces cerevisiae VL3]
 gi|365763937|gb|EHN05463.1| Rrp5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1729

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 382/1314 (29%), Positives = 630/1314 (47%), Gaps = 193/1314 (14%)

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 614
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 615  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 729  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 782
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 783  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 838  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 892
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 893  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 942
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 943  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 993
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 994  --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1051
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1052 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1171 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1339
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1340 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1398
            G IK V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK+
Sbjct: 1270 GTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329

Query: 1399 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1458
            +ISL +K+S+F  +A   +++S   +    +++   +   ++ ++     D D ES+ G 
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTADQLEKEDEDEVMADA--GFNDSDSESDIGD 1384

Query: 1459 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1515
                               + D +P+   +G+S + G    A  +D+        +++  
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429

Query: 1516 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1566
              E ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489

Query: 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626
            ++EKAR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D  
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547

Query: 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1684
             +H  LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607

Query: 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
            AL +LP+  HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667

Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
               +  LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 284/1259 (22%), Positives = 540/1259 (42%), Gaps = 178/1259 (14%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRG---------------------LARAADALD----PIL 37
            L G ++ + ++DL I    G+ G                     +    DA D     + 
Sbjct: 122  LLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAADEKKSKVE 181

Query: 38   DNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLR 83
            D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K++I L++ 
Sbjct: 182  DAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELTIE 241

Query: 84   LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 143
             S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +      +   PG
Sbjct: 242  PSSVNTYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKL--LPG 298

Query: 144  LLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
             +  G + +  DR+   + +++D    S    K  +  SID ++PG +V    +SI +NG
Sbjct: 299  AVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLLCESITKNG 352

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            +        +G V++ HL+ TF   + K+ +     +  RI+                 L
Sbjct: 353  IAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAIGSSIRCRII---------------ACL 396

Query: 263  HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------STPAYVTIS 309
             N+   S  KV  + +   +++++  L     + + P+             S   Y+ + 
Sbjct: 397  ENK---SGDKVLILSNLPHILKLEDALRSTEGLDAFPIGYTFESCSIKGRDSEYLYLALD 453

Query: 310  D-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
            D     V    V ++E      S    R+LG+  ++ +          +      +D+  
Sbjct: 454  DDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPI 509

Query: 365  G-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G+++  RV+ V
Sbjct: 510  GELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISV 569

Query: 423  KSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNG 474
             S+  + VT KK+LV    ++L ++S+Y  A +       T   +   + +GC + F+ G
Sbjct: 570  NSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGG 629

Query: 475  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 529
            + GF P SE+       P     +GQ V  +++      RRI  +  +   + ++     
Sbjct: 630  LSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKDTI 689

Query: 530  DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGY 588
            +++V   ++++  V   T ++V+V +   G  +G I   HL+D  +E        ++ G 
Sbjct: 690  ENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQLKKLRIGT 748

Query: 589  EFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETG 642
            E   L++  D  +    +S K SLI  A++  LP    D   ++ +  +H Y+ +I + G
Sbjct: 749  ELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKG 808

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
             FV F G+  G    S AVD +  D+SK +Y+ QSV   +L  + +  +  LSLK     
Sbjct: 809  LFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLKAPKVK 868

Query: 703  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSF 760
                        +E+ +          S +K  +   IGS+++ K+   + N   V+++ 
Sbjct: 869  EEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKSVKKNQLNVILAA 916

Query: 761  EEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVDLSLKTVFI 809
              H         D Y  IT  +   +  +   VI+  I+   DV K+ + + ++ K    
Sbjct: 917  NLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLPITHKISKA 975

Query: 810  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASV 868
                 +    + + K+   ++ +++ + Q +   V     N+L L++ P     I    +
Sbjct: 976  SVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLKARISLLDL 1035

Query: 869  SDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSKRAKKKSSY 927
            +D N   F +    N +SV     AL    ++  R    + AI ++    +      S+ 
Sbjct: 1036 AD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN-----MSTI 1085

Query: 928  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
             VG  +   + +I    + L  G    G   IT+  +D S  ++  F + KI   +   +
Sbjct: 1086 KVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KINNVIPTTV 1144

Query: 988  IA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1045
            ++  + NK         ELS++ +      I S       D+  G+ V G V  V+++  
Sbjct: 1145 LSVDEQNKK-------IELSLRSATAKTRSIKS-----HEDLKQGEIVDGIVKNVNDKGI 1192

Query: 1046 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1105
             + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++ + + L LR  + 
Sbjct: 1193 FVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-ISLTLRESEI 1249

Query: 1106 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKN 1162
                K +   +D     I  GD+  G I  +     G+ V++    ++ G  H TE+ +
Sbjct: 1250 NGDLKVLKTYSD-----IKAGDVFEGTIKNVTD--FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 37/330 (11%)

Query: 92   SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 144
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 260
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L   
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAFED--KINNVIPTTVLSVDEQNKKIELSLRSA 1161

Query: 261  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 318
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 319  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 375
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKNV 1275

Query: 376  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|6323885|ref|NP_013956.1| Rrp5p [Saccharomyces cerevisiae S288c]
 gi|2498865|sp|Q05022.1|RRP5_YEAST RecName: Full=rRNA biogenesis protein RRP5; AltName: Full=Ribosomal
            RNA-processing protein 5; AltName: Full=U3 small
            nucleolar RNA-associated protein RRP5; Short=U3
            snoRNA-associated protein RRP5
 gi|887610|emb|CAA90200.1| Rrp5p [Saccharomyces cerevisiae]
 gi|285814233|tpg|DAA10128.1| TPA: Rrp5p [Saccharomyces cerevisiae S288c]
 gi|392297399|gb|EIW08499.1| Rrp5p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1729

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 380/1314 (28%), Positives = 630/1314 (47%), Gaps = 193/1314 (14%)

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 614
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 615  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
              +LP      +A +I   N      +      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 729  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 782
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 783  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 838  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 892
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 893  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 942
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 943  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 993
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 994  --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1051
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1052 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1171 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226
             +     E   D ++       +   VL +    +    +ELSLR +     S  S    
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRPATAKTRSIKSH--- 1171

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1339
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1340 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1398
            G IK V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK+
Sbjct: 1270 GTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329

Query: 1399 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1458
            +ISL +K+S+F  +A   +++S   +   ++++   +   ++ ++     D D ES+ G 
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTVDQLEKEDEDEVMADA--GFNDSDSESDIGD 1384

Query: 1459 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1515
                               + D +P+   +G+S + G    A  +D+        +++  
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429

Query: 1516 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1566
              E ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489

Query: 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626
            ++EKAR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D  
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547

Query: 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1684
             +H  LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607

Query: 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
            AL +LP+  HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667

Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
               +  LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 286/1259 (22%), Positives = 541/1259 (42%), Gaps = 178/1259 (14%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRG---------------------LARAADALD----PIL 37
            L G ++ + ++DL I    G+ G                     +    DA D     + 
Sbjct: 122  LLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAADEKKSKVE 181

Query: 38   DNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLR 83
            D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K++I L++ 
Sbjct: 182  DAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELTIE 241

Query: 84   LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 143
             S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +      +   PG
Sbjct: 242  PSSVNIYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKL--LPG 298

Query: 144  LLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
             +  G + +  DR+   + +++D    S    K  +  SID ++PG +V    +SI +NG
Sbjct: 299  AVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLLCESITKNG 352

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            +        +G V++ HL+ TF   + K+ +     +  RI+                 L
Sbjct: 353  IAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFVIGSSIRCRII---------------ACL 396

Query: 263  HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------STPAYVTIS 309
             N+   S  KV  + +   +++++  L     + + P+             S   Y+ + 
Sbjct: 397  ENK---SGDKVLILSNLPHILKLEDALRSTEGLDAFPIGYTFESCSIKGRDSEYLYLALD 453

Query: 310  D-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
            D     V    V ++E      S    R+LG+  ++ +          +      +D+  
Sbjct: 454  DDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPI 509

Query: 365  G-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G+++  RV+ V
Sbjct: 510  GELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISV 569

Query: 423  KSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNG 474
             S+  + VT KK+LV    ++L ++S+Y  A +       T   I   + +GC + F+ G
Sbjct: 570  NSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGG 629

Query: 475  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 529
            + GF P SE+       P     +GQ V  +++      RRI  +  +   + ++     
Sbjct: 630  LSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKDTI 689

Query: 530  DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGY 588
            +++V   ++++  V   T ++V+V +   G  +G I   HL+D  +E        ++ G 
Sbjct: 690  ENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQLKKLRIGT 748

Query: 589  EFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETG 642
            E   L++  D  +    +S K SLI  A++  LP    D   ++ +  +H Y+ +I + G
Sbjct: 749  ELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKG 808

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
             FV F G+  G    S AVD +  D+SK +Y+ QSV   +L  + +  +  LSLK     
Sbjct: 809  LFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLKAPKVK 868

Query: 703  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSF 760
                        +E+ +          S +K  +   IGS+++ K+   + N   V+++ 
Sbjct: 869  EEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKSVKKNQLNVILAA 916

Query: 761  EEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVDLSLKTVFI 809
              H         D Y  IT  +   +  +   VI+  I+   DV K+ + + ++ K    
Sbjct: 917  NLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLPITHKISKA 975

Query: 810  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASV 868
                 +    + + K+   ++ +++ + Q +   V     N+L L++ P     I    +
Sbjct: 976  SVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLKARISLLDL 1035

Query: 869  SDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSKRAKKKSSY 927
            +D N   F +    N +SV     AL    ++  R    + AI ++    +      S+ 
Sbjct: 1036 AD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN-----MSTI 1085

Query: 928  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
             VG  +   + +I    + L  G    G   IT+  +D S  ++  F + KI   +   +
Sbjct: 1086 KVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KINNVIPTTV 1144

Query: 988  IA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1045
            ++  + NK         ELS++P+      I S       D+  G+ V G V  V+++  
Sbjct: 1145 LSVDEQNKK-------IELSLRPATAKTRSIKS-----HEDLKQGEIVDGIVKNVNDKGI 1192

Query: 1046 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1105
             + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++ + + L LR  + 
Sbjct: 1193 FVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-ISLTLRESEI 1249

Query: 1106 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKN 1162
                K +   +D     I  GD+  G I  +     G+ V++    ++ G  H TE+ +
Sbjct: 1250 NGDLKVLKTYSD-----IKAGDVFEGTIKSVTD--FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score = 60.8 bits (146), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 498  VGQVVKCRIMSSIPASRRINLSFMMKPTRV----SEDDLVKLGSLVSGVVDVVTPNAVVV 553
            +  V+   ++S    +++I LS      +     S +DL K G +V G+V  V    + V
Sbjct: 1136 INNVIPTTVLSVDEQNKKIELSLRPATAKTRSIKSHEDL-KQGEIVDGIVKNVNDKGIFV 1194

Query: 554  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP-GYEFDQLLVLDNESSNLLLSAKYSLI 612
            Y+  K   +  +P   L+D   +    K   KP  Y   +++  D E S + L+ + S I
Sbjct: 1195 YLSRK--VEAFVPVSKLSDS--YLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRESEI 1249

Query: 613  NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSK 670
            N   ++    S I    V  G + ++ + G FV+      +TG A  ++  D +  DLS 
Sbjct: 1250 NGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSA 1309

Query: 671  TYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
             + VG  V++ +L  N E  +I+LSLK S  S
Sbjct: 1310 LFGVGDRVKAIVLKTNPEKKQISLSLKASHFS 1341



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 136/330 (41%), Gaps = 37/330 (11%)

Query: 92   SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 144
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 260
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L P 
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAFED--KINNVIPTTVLSVDEQNKKIELSLRPA 1161

Query: 261  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 318
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 319  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 375
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G + +V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSV 1275

Query: 376  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|71002516|ref|XP_755939.1| rRNA biogenesis protein RRP5 [Aspergillus fumigatus Af293]
 gi|66853577|gb|EAL93901.1| rRNA biogenesis protein RRP5, putative [Aspergillus fumigatus Af293]
          Length = 1822

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 368/1347 (27%), Positives = 661/1347 (49%), Gaps = 163/1347 (12%)

Query: 533  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGTVVKGKIEKLLIGPAGVDGLIVTLADGIT-GLVPSMHFADTALQFPEKK--FREGM 610

Query: 589  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
                ++L ++ +   + L+ K SL+NS   +  D   I P S   G + NI   G  V+F
Sbjct: 611  TITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQF 670

Query: 648  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVSCKDP------ST 724

Query: 708  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHES----NDFGVVVSFEE 762
            F + +    EKI                 G  + G+V E  V +     ++FG++   + 
Sbjct: 725  FTETYRKAFEKIQ---------------PGLRVTGTVFEKSVDDVLLKLDEFGLIARLDL 769

Query: 763  HSDVYGFITHHQLAGATVESGSVIQAA-ILDVAKAERLVDLSLKTVFIDRFREANSNRQA 821
               V G  +    A + +  G  +    +LD+ +A RL+ +S +           S ++A
Sbjct: 770  AHVVDGPESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKA 819

Query: 822  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQ 878
             K+       +D+     V   V  +  + L +        IG      ++D N  K P 
Sbjct: 820  AKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEF--LGGIIGLVPKRLLADENVNK-PD 876

Query: 879  KQFLNGQSVIATVMAL------------PSSSTAG----RLLLLLKAISETETSSSKRAK 922
               +  Q V ATV ++            PS +T+            +  E   +  +  K
Sbjct: 877  YDMVKSQLVTATVHSIDRDFQRFILSMKPSEATSAGPKKPAPKPTPSNDEVTNAVDESIK 936

Query: 923  KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIG 980
              S +  G  V  ++  +K  ++ ++      GRI ++EV D   ++ +       F+  
Sbjct: 937  SMSDFTFGRTVNCKVVSVKATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFRPK 996

Query: 981  QTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1031
            Q+++ARI+    A+S+K  P   +S    ++ELS+KPS L  +   S L  E+  V +G 
Sbjct: 997  QSISARILGIHDARSHKFLPISHRSGKFPVFELSVKPSFLQAAN-PSPLNLEQ--VQVGS 1053

Query: 1032 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1091
               G+V  V ++   + +S +++ +L  +D++ + S   + ++ F IG A+  HV +++ 
Sbjct: 1054 TWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAAVDT 1113

Query: 1092 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1151
            EK  L L  +     +S + + +           G I+ GR++K+      +++Q+   +
Sbjct: 1114 EKGRLDLTAKQRSSKLSFEDISV-----------GMILPGRVTKVTEK--QVIMQLSDTV 1160

Query: 1152 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1211
             G V+  +L +          D  + +P + Y +   ++  V+ + +  +    + LSLR
Sbjct: 1161 VGAVNLIDLAD----------DYSKANP-TVYHKNDVLRACVVGVDKANK---KISLSLR 1206

Query: 1212 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1271
             S           LS+ +      +  ++ L  N +V+G+VK V   G F+ L   + A 
Sbjct: 1207 PS---------KVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAY 1257

Query: 1272 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1331
            V +S+LSD Y++  +  F + +LV GRV  V+P   R++++LK S      ++ I  + +
Sbjct: 1258 VRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPIT-MHD 1316

Query: 1332 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1390
            L VG  V G++++VE +G FI I+ + N+ GLCH SE+++  VD+  T+Y  G+ VK KI
Sbjct: 1317 LKVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKI 1376

Query: 1391 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE---AIEEVGSYNRSSLLENSSVAV 1447
            +K+D+E  +IS  +K+S+FK+  +  +  S+EE D    +++ +G  +     ++     
Sbjct: 1377 IKIDRESGKISFSLKASHFKDHDEEDESGSDEEGDSNGVSLDGMGGVDVEGSDDSEDDDD 1436

Query: 1448 Q-------DMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1500
                    D++ +SE  G      +E  ++    +  L     D    +  ++    ++ 
Sbjct: 1437 DDESMGGVDLEEDSESDGGESDEDVEMTSAPVKRDGGLGATGFDWSGNVKDDEDEAMQSD 1496

Query: 1501 TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1560
            + DE N+R  KKK ++   Q  R  E   L+ + P++  ++ERL+   P+SS +W+KYMA
Sbjct: 1497 SDDEDNSRKKKKKSRKPEIQVDRTGE---LDANGPQSVADYERLLLGEPDSSLLWLKYMA 1553

Query: 1561 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1620
            F L + +VEKAR IAERAL+TI+I ++ EKLNIWVA  NLEN YGN  ++++ +VF+RA 
Sbjct: 1554 FQLELGEVEKAREIAERALRTISIGQDTEKLNIWVALLNLENTYGN--DDSLDEVFKRAC 1611

Query: 1621 QYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EG 1677
            QY D ++++  +  +Y ++ +N+ ADEL    + KK  ++ K +L     L       + 
Sbjct: 1612 QYNDTQEIYDRMTSIYIQSGKNEKADELFQTALKKKISNTPKFFLNYASFLFDSMAAPDR 1671

Query: 1678 VQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIY 1735
             ++++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ 
Sbjct: 1672 ARSLLPRALQSLPSHTHVELTSKFGQLEFRSPNGDVERGRTVFEGLLSSFPKRVDLWNVL 1731

Query: 1736 LDQEIRLGDVDLIRGLFERAISL-------------------SLPPKKMKFLFKKYLEYE 1776
            LD EI+ GD + +R LFER + +                    L PK+ KF FKK+L +E
Sbjct: 1732 LDLEIKNGDAEQVRRLFERVLGIRDAKNGAAAAVATPTDASKKLRPKQAKFFFKKWLSFE 1791

Query: 1777 KSV-----GEEERIEYVKQKAMEYVES 1798
            + +     G+E+ +E +K +A +YV+S
Sbjct: 1792 EKLAAANGGDEKMVEEIKARAADYVKS 1818



 Score =  171 bits (434), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 191/761 (25%), Positives = 329/761 (43%), Gaps = 72/761 (9%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN-EDNLLPTI----------- 52
           G V+ +N  D+ + LP  L G      A+   LD +IE    DN                
Sbjct: 162 GQVSSINAHDIGLSLPNNLTGYVPLT-AVSKKLDEKIEKILNDNDNEDSDAEEEDGDDDS 220

Query: 53  ------FHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 103
                 F++GQ +   V+ +     D     K++I LS+       GLS   ++    + 
Sbjct: 221 LDLTDYFYLGQYLRASVVSVGSNAADAPSKNKKRIELSVDPRQANAGLSKSDLEVNTAIQ 280

Query: 104 AYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVV 160
           A V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V   +    VV
Sbjct: 281 ASVVSVEDHGLVMDLGIEGADVKGFMSKKEIDPKTDYSSIKEGSVFLCMVTGQNANGSVV 340

Query: 161 YLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 218
            LS++  +              +I+  +PG      +  +  +G++   +     TVD+ 
Sbjct: 341 KLSANLQSAGSIKKSHYLSTASTINSFLPGTAAEILLTEVSSSGLIGKIMGMLDATVDLV 400

Query: 219 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL----HNRAPPSH-- 270
                    +    +    K+  RI+   P S    VG ++  ++L        P +   
Sbjct: 401 QSGGNSGKDDLTKKFQMGAKIKGRIVCTFPASEPFKVGFSILDHVLKFATEGHGPGTSED 460

Query: 271 -VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEG 326
              +  I  ++KVV VD G+G+ + + ST      +V +S +A+ +V  +  +   ++  
Sbjct: 461 APAISAIIPETKVVMVDPGMGVYVQMGST--KHVGFVHVSRLADGKVEHIAPEHGPFRID 518

Query: 327 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV-------IAVDSFG 379
           S    R++G+   +GL     +    E       DV  G VVKGK+         VD  G
Sbjct: 519 SVHEARVVGYSAFDGLYLLSFERKVIEQPFLRMEDVTVGTVVKGKIEKLLIGPAGVD--G 576

Query: 380 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 437
            IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L+ 
Sbjct: 577 LIVTLADGITGLVPSMHFADTALQFPEKKFREGMTITARILSVNLQKRQIRLTLKKSLLN 636

Query: 438 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 497
           S+ AI   Y +      + G I  I+ HG  V+FY  V+GF P SE+      +PS  + 
Sbjct: 637 SESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFR 696

Query: 498 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVV 552
            GQVV    +S  PA  ++ +S    P+  +E      + ++ G  V+G V   + + V+
Sbjct: 697 QGQVVNVHALSVDPALGKLAVS-CKDPSTFTETYRKAFEKIQPGLRVTGTVFEKSVDDVL 755

Query: 553 VYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSNLLL--SAKY 609
           + +   G     +   H+ D  E   +   S I+ G + + LLVLD + +  L+  SA+ 
Sbjct: 756 LKLDEFGLI-ARLDLAHVVDGPESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA 814

Query: 610 SLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR----SKAVDG 663
           SL  +A+Q  LP+    I   + V G+V NI   G F+ FLG + G  P+     + V+ 
Sbjct: 815 SLKKAAKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEFLGGIIGLVPKRLLADENVNK 874

Query: 664 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
              D+ K+  V  +V S    ++ +  R  LS+K S  +S 
Sbjct: 875 PDYDMVKSQLVTATVHS----IDRDFQRFILSMKPSEATSA 911



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 142/315 (45%), Gaps = 39/315 (12%)

Query: 407  KKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
            K F +G+ L   V  V ++  R+ +T K+    SKL    S+ + +  +I  G +TK+ +
Sbjct: 1096 KHFPIGSALKVHVAAVDTEKGRLDLTAKQR--SSKL----SFEDISVGMILPGRVTKVTE 1149

Query: 465  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 524
                ++  + V G     +L  D      ++YH   V++  ++    A+++I+LS  ++P
Sbjct: 1150 KQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANKKISLS--LRP 1207

Query: 525  TRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLA 571
            ++V    L            +K+  +V G V  V  + + V +   G+     +    L+
Sbjct: 1208 SKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTL---GHDVTAYVRVSDLS 1264

Query: 572  DHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 626
            D     + +K   K  ++ DQL+     V+D E   L +S K S+++   + P     + 
Sbjct: 1265 D-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLK 1318

Query: 627  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
                V G V  + E G F+       ++G   RS+  D +  D    Y  G  V++ I+ 
Sbjct: 1319 VGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKIIK 1378

Query: 685  VNSETGRITLSLKQS 699
            ++ E+G+I+ SLK S
Sbjct: 1379 IDRESGKISFSLKAS 1393



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 155/349 (44%), Gaps = 50/349 (14%)

Query: 80   LSLRLSLLYKG----LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 135
            LS++ S L       L+LE VQ G     +V ++ D    ++   P+  G L   + +++
Sbjct: 1029 LSVKPSFLQAANPSPLNLEQVQVGSTWVGFVNNVADDCLWINLS-PNVRGRLRFMDASDD 1087

Query: 136  SGI--DVKP----GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 189
              +  DV+     G  L+  V ++D  +  + L++   + SK   +D   IS+ +++PG 
Sbjct: 1088 LSLFADVEKHFPIGSALKVHVAAVDTEKGRLDLTAKQRS-SKLSFED---ISVGMILPG- 1142

Query: 190  MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILF 245
                RV  + E  V++       G V++  L + +    PT   KND      + A ++ 
Sbjct: 1143 ----RVTKVTEKQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDV-----LRACVVG 1193

Query: 246  VDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGLGLLLDI 295
            VD  ++ + L+L P  + + + P           +KV D+  +  V RV D GL + L  
Sbjct: 1194 VDKANKKISLSLRPSKVLSSSLPVQDPEITSMKQLKVNDVV-RGFVKRVADSGLFVTLGH 1252

Query: 296  PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE-- 353
              T     AYV +SD+++  +++ +  ++    V+ R+      +G     LK S  +  
Sbjct: 1253 DVT-----AYVRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPE 1307

Query: 354  -GLVFTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSE 399
                 T  D+K G  V GKV  V+ FGA  ++     +  LC    M++
Sbjct: 1308 YKAPITMHDLKVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMAD 1356



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 157/363 (43%), Gaps = 34/363 (9%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSC 61
            W G V  V +  L I L   +RG  R  DA D + L  ++E +        F +G  +  
Sbjct: 1055 WVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKH--------FPIGSALKV 1106

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 121
             V  +D +K   G+  +    R S     LS E +  GM+L   V  + +   I+     
Sbjct: 1107 HVAAVDTEK---GRLDLTAKQRSS----KLSFEDISVGMILPGRVTKVTEKQVIMQLS-D 1158

Query: 122  SFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVT 174
            +  G +   +LA++      P +     +L+  V  +D+  K + LS  P  V  S    
Sbjct: 1159 TVVGAVNLIDLADDYS-KANPTVYHKNDVLRACVVGVDKANKKISLSLRPSKVLSSSLPV 1217

Query: 175  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
            +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L +++    WK+ + 
Sbjct: 1218 QDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDSY-LKEWKDSFQ 1276

Query: 235  QHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLG 290
              + V  R+  VDP    + ++L   +L    +AP +   +KVG  +   KV +V+    
Sbjct: 1277 VDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQ-FVTGKVRKVEEFGA 1335

Query: 291  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
             ++   S  +S   +   S++A++ V      Y+EG  V+ +I+      G  +  LKAS
Sbjct: 1336 FIVIDRSANISGLCHR--SEMADKRVDDARTLYEEGDLVKAKIIKIDRESGKISFSLKAS 1393

Query: 351  AFE 353
             F+
Sbjct: 1394 HFK 1396


>gi|239614080|gb|EEQ91067.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis ER-3]
 gi|327358030|gb|EGE86887.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1811

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 384/1448 (26%), Positives = 692/1448 (47%), Gaps = 206/1448 (14%)

Query: 449  ATDRLITHGWITKIEKH-GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKC 504
            A   +I    +TK+E   G +V+F +   GFA  S L    +D        Y V    + 
Sbjct: 468  AISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEA 527

Query: 505  RIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYV 555
            RI+     S   NL  +    +V +   ++L     G++V G ++  ++  + +  ++  
Sbjct: 528  RIVG---FSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLIVS 584

Query: 556  IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLIN 613
            +A G S G +   H++D  L+H    +   + G +   ++L ++ +   L L+ K SL+N
Sbjct: 585  LADGIS-GLVAGMHMSDTKLQHP---EKKFREGAQVSARILSVNLDKRQLRLTLKKSLLN 640

Query: 614  SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 673
            S      D + I P +   G + +I   G  V+F G + GF P S+  +    D ++ + 
Sbjct: 641  SESPAWKDYNGILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFN 700

Query: 674  VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 733
            VGQ V  + L+V+ E  ++ +S K       D S   E +    K A             
Sbjct: 701  VGQVVNVHALNVDVELRKLVVSCK-------DPSSFTEAY----KSAF------------ 737

Query: 734  WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI------- 786
              E    G ++ G V E +   +++  E+   V      H   G T  +G  +       
Sbjct: 738  --ENIHPGDIVSGTVFEKSSEDILLKLEDTGLVARLNAEHVADGQTSRNGVALARIRVGQ 795

Query: 787  ---QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 843
               +  IL++ KA RL+ ++ K           S +QA+++       +DL     V   
Sbjct: 796  KLNELLILNIQKAHRLIKVTNKP----------SLKQARQRGELPARFEDLKEGAKVTGF 845

Query: 844  VEIVKENYLVLSLPEYNHSI-GYAS---VSDYNTQKFPQKQFLNGQSVIATVMALPSSST 899
            V+ +  + L +   E+   I G+A    V D +  K P   +   Q +  +V ++     
Sbjct: 846  VKNITVDGLFV---EFLGGITGFAPKRLVDDDHVNK-PDFGYFLSQPISLSVESIEDDRQ 901

Query: 900  AGRLLLLLKAISETETSSS-----------------KRAKKKSSYDVGSLVQAEITEIKP 942
              R +L +K     + +S                  +  K       G + +A++  +K 
Sbjct: 902  --RFILRMKEQVNKQRASDGVKPANNVNQSSINPIDENIKSLDDLTFGRVTKAKVVSVKE 959

Query: 943  LELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARII----AKSNK--- 993
             ++ ++      GRI ++EV D  D     +     FK  Q +  R++    A+S+K   
Sbjct: 960  TQINVQLAENIQGRIDVSEVFDSWDAIKDRKQPLKYFKAKQIIPVRVLGIHDARSHKFLP 1019

Query: 994  --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1051
                  K  ++ELS KPS L  +++    L +   V IG    G+V  + ++   + IS 
Sbjct: 1020 ISHRTGKYPVFELSAKPSSLQSTDLEPLSLDK---VKIGSSWVGFVNNIGDDCLWINISP 1076

Query: 1052 HLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----PFQDGI 1107
            +++ +L   D + + S + +  + F +G A+  HV  ++ +K  L L  R    P +  I
Sbjct: 1077 NVRGRLRFTDLSDDLSLVGDIAKNFPVGSALKIHVTGVDADKNRLDLSARHGGLPNRKSI 1136

Query: 1108 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1167
            SD               +G+I+ G+++++       +VQ+     G ++  ++ +     
Sbjct: 1137 SD-------------FSKGEILLGQVTRVTERQA--LVQLSNSTVGAINLIDMAD----- 1176

Query: 1168 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1227
                 D  + +P + + + + ++  +++I    +    + LS+R S           LS+
Sbjct: 1177 -----DFSKVNP-ADFHKNEVIRVCIIDIDVPNK---KILLSVRPS---------RVLSS 1218

Query: 1228 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1287
             +      +  I  L  N IV+G+V+ V + G F+ L   + A + +S+LSD Y++  + 
Sbjct: 1219 SLPIQDPEINSISQLKVNDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQN 1278

Query: 1288 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1347
            EF + +LV GR++  +  S +++++LK S      ++ I  + +L  G IV G+++ VE 
Sbjct: 1279 EFQVDQLVRGRIILADAESNKLQMSLKESVLEPNYKTPIT-IKDLKRGQIVTGKVRNVEE 1337

Query: 1348 YGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            +G FI I+ T NL GLCH +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+
Sbjct: 1338 FGAFIVIDGTANLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERISLGLKA 1397

Query: 1407 SYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIE 1466
            SYFK+       S +E +DE+ ++V   N S   ++       MD+E E G  + +  ++
Sbjct: 1398 SYFKD-------SDDESNDESADDVSEENMSESEDDGG-----MDLELESGDDISMGGVD 1445

Query: 1467 SRASV---------------PPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK 1511
               ++               P ++  L     D +   +   G  +++ +  E +++   
Sbjct: 1446 MEDAMSDASDEDVQMAGTEDPAVKGGLVTSGFDWNGNTTTGAGEGNDSGS--ESDDQTVT 1503

Query: 1512 KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1571
            KK++  R+ EI+      L+ + P++  ++ERL+   P+SS +W+KYMAF L +++V+KA
Sbjct: 1504 KKKR--RKPEIQVDRTGDLDANGPQSIADYERLLLGEPDSSLLWLKYMAFQLELSEVDKA 1561

Query: 1572 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1631
            R IAERAL++I+I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  
Sbjct: 1562 REIAERALRSISIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHER 1619

Query: 1632 LLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLS 1688
            L  +Y ++ +N  ADEL    + KKF  S  ++L     L     + E  +A++ RA+ +
Sbjct: 1620 LTSIYIQSGKNDKADELFQATLKKKFTQSPNIYLNFATFLFDTLAEPERARALLPRAIQA 1679

Query: 1689 LPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1746
            LP H H+   S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI+ G+V+
Sbjct: 1680 LPAHTHVDITSKFGQLEFRSPNGDIERGRTIFEGLLSSFPKRVDLWNVLLDLEIKSGEVE 1739

Query: 1747 LIRGLFERAISLS--------------LPPKKMKFLFKKYLEYEKSVGE--EERIEYVKQ 1790
             +R LFER + L               L  K+ KF FKK+L +E+  G+  E+ ++ VK 
Sbjct: 1740 QVRRLFERVLGLGHGIAADGTKTVSKKLKDKQAKFFFKKWLTFEEKAGDGNEKMVDEVKA 1799

Query: 1791 KAMEYVES 1798
            +A EYV++
Sbjct: 1800 RAAEYVKA 1807



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 181/749 (24%), Positives = 318/749 (42%), Gaps = 54/749 (7%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNLLP-------- 50
           K+ G V+ +N  D+ + LP  L G   +   +  L   ++N +++N++            
Sbjct: 163 KVLGQVSSINAHDIGLSLPNNLTGYIPITAVSRTLQQKIENLLKSNQEENDNSDDDEEEE 222

Query: 51  ------TIFHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 101
                 + F +GQ +   VL  + +    K  GK+ I LS+       GLS   +     
Sbjct: 223 EDLDLNSYFKLGQYLRASVLSTETEVNHGKTKGKKHIRLSVDPREANSGLSKSDLVVNAT 282

Query: 102 LTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRK 158
           + A V S+EDHG ++  GL      GF+    +  +  +  +K G +   VV   +    
Sbjct: 283 VQASVLSVEDHGLVMDLGLQDGQTKGFMSSKEIPHDLEVSQIKEGSVFLCVVTGHNADGS 342

Query: 159 VVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
           VV LS++  T              +I+  +PG      +  +   G+    +      VD
Sbjct: 343 VVKLSANLPTAGSIKKSHFLTSAPTINSFLPGTAAEILLTEVTSTGMAGKIMGMLNAVVD 402

Query: 217 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL---------TLNPYLLHNRAP 267
           +     T    +    Y+   K+  R++   PT   + L            P +L  +  
Sbjct: 403 LVQSGTTTGKEDITTKYHVGAKIKGRLICTFPTVEPMKLGFSILDHVVKFTPTVLEQKPS 462

Query: 268 PSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 326
                 +  I  + KV +V+ GLG+ +              +SD   + +   +  YK  
Sbjct: 463 SEDTPAISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVD 522

Query: 327 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAI 381
           S    RI+GF  L+ L    L+    +       DV  G VV+GK+    I  D   G I
Sbjct: 523 STHEARIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLI 582

Query: 382 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSK 439
           V    G+  L    HMS+ ++  P KKF+ GA++  R+L V    +++ +T KK+L+ S+
Sbjct: 583 VSLADGISGLVAGMHMSDTKLQHPEKKFREGAQVSARILSVNLDKRQLRLTLKKSLLNSE 642

Query: 440 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 499
                 Y        + G I  I+ HG  V+FY  V+GF P SE+      +P+  ++VG
Sbjct: 643 SPAWKDYNGILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNVG 702

Query: 500 QVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVY 554
           QVV    ++     R++ +S    P+  +E      + +  G +VSG V   +   +++ 
Sbjct: 703 QVVNVHALNVDVELRKLVVS-CKDPSSFTEAYKSAFENIHPGDIVSGTVFEKSSEDILLK 761

Query: 555 VIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSL 611
           +   G     +  EH+AD       V  + I+ G + ++LL+L+ + ++ L+  + K SL
Sbjct: 762 LEDTGLV-ARLNAEHVADGQTSRNGVALARIRVGQKLNELLILNIQKAHRLIKVTNKPSL 820

Query: 612 INSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 669
             + Q  +LP+    +   + V G+V NI   G FV FLG +TGFAP+    D       
Sbjct: 821 KQARQRGELPARFEDLKEGAKVTGFVKNITVDGLFVEFLGGITGFAPKRLVDDDHVNKPD 880

Query: 670 KTYYVGQSVRSNILDVNSETGRITLSLKQ 698
             Y++ Q +  ++  +  +  R  L +K+
Sbjct: 881 FGYFLSQPISLSVESIEDDRQRFILRMKE 909



 Score = 42.0 bits (97), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 152/363 (41%), Gaps = 32/363 (8%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSC 61
            W G V  + +  L I +   +RG  R  D  D + L  +I  N        F VG  +  
Sbjct: 1058 WVGFVNNIGDDCLWINISPNVRGRLRFTDLSDDLSLVGDIAKN--------FPVGSALKI 1109

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 121
             V  +D DK      ++ LS R   L    S+    +G +L   V  + +   ++     
Sbjct: 1110 HVTGVDADKN-----RLDLSARHGGLPNRKSISDFSKGEILLGQVTRVTERQALVQLS-N 1163

Query: 122  SFTGFLPRNNLAEN----SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTK 175
            S  G +   ++A++    +  D     +++  +  ID   K + LS  P  V  S    +
Sbjct: 1164 STVGAINLIDMADDFSKVNPADFHKNEVIRVCIIDIDVPNKKILLSVRPSRVLSSSLPIQ 1223

Query: 176  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 235
            D +  SI  L    +V   V+ +  NG+ ++     T  + I  L +++    W+N++  
Sbjct: 1224 DPEINSISQLKVNDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSY-LKEWQNEFQV 1282

Query: 236  HKKVNARILFVDPTSRAVGLTLNPYLLH-NRAPP---SHVKVGDIYDQSKVVRVDRGLGL 291
             + V  RI+  D  S  + ++L   +L  N   P     +K G I    KV  V+   G 
Sbjct: 1283 DQLVRGRIILADAESNKLQMSLKESVLEPNYKTPITIKDLKRGQIV-TGKVRNVEE-FGA 1340

Query: 292  LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGILKAS 350
             + I  T  +       +++AE +V    K +++G  V+ +I+    + E ++ G LKAS
Sbjct: 1341 FIVIDGT-ANLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERISLG-LKAS 1398

Query: 351  AFE 353
             F+
Sbjct: 1399 YFK 1401


>gi|151945933|gb|EDN64165.1| U3 snoRNP protein [Saccharomyces cerevisiae YJM789]
          Length = 1729

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 381/1314 (28%), Positives = 630/1314 (47%), Gaps = 193/1314 (14%)

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 614
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISDT--RLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 615  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 729  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 782
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVDVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 783  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 838  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 892
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 893  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 942
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 943  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 993
             +L +      HGR+ I EV D    + +     S++K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSSYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 994  --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1051
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1052 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
             VDI   NM T I  GD + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1171 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1339
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1340 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1398
            G IK V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK+
Sbjct: 1270 GTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329

Query: 1399 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1458
            +ISL +K+S+F  +A   +++S   +    +++   +   ++ ++     D D ES+ G 
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTTDQLEKEDEDEVMADA--GFNDSDSESDIGD 1384

Query: 1459 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1515
                               + D +P+   +G+S + G    A  +D+        +++  
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429

Query: 1516 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1566
              E ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489

Query: 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626
            ++EKAR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D  
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547

Query: 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1684
             +H  LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607

Query: 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
            AL +LP+  HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667

Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
               +  LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 289/1264 (22%), Positives = 542/1264 (42%), Gaps = 188/1264 (14%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRG---------------------LARAADALD----PIL 37
            L G ++ + ++DL I    G+ G                     +    DA D     + 
Sbjct: 122  LLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAADEKKSKVE 181

Query: 38   DNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLR 83
            D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K++I L++ 
Sbjct: 182  DAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELTIE 241

Query: 84   LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 143
             S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +      +   PG
Sbjct: 242  PSSVNTYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKL--LPG 298

Query: 144  LLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
             +  G + +  DR+   + +++D    S    K  +  SID ++PG +V    +SI +NG
Sbjct: 299  AVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLLCESITKNG 352

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            +        +G V++ HL+ TF   + K+ +     +  RI+                 L
Sbjct: 353  IAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAIGSSIRCRII---------------ACL 396

Query: 263  HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------STPAYVTIS 309
             N+   S  KV  + +   +++++  L     + + P+             S   Y+ + 
Sbjct: 397  ENK---SGDKVLILSNLPHILKLEDALKSTEGLDAFPIGYTFESCSIKGRDSEYLYLALD 453

Query: 310  D-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
            D     V    V ++E      S    R+LG+  ++ +          +      +D+  
Sbjct: 454  DDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPI 509

Query: 365  G-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G+++  RV+ V
Sbjct: 510  GELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISV 569

Query: 423  KSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNG 474
             S+  + VT KK+LV    ++L ++S+Y  A +       T   +   + +GC + F+ G
Sbjct: 570  NSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGG 629

Query: 475  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
            + GF P SE+       P     +GQ V  +++      RRI     +   +VS +   +
Sbjct: 630  LSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRI-----IATCKVSNEQAAQ 684

Query: 535  ----LGSLVSG----VVDVV--TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSV 583
                + ++V G     VDV+  T ++V+V +   G  +G I   HL+D  +E        
Sbjct: 685  QKDTIENIVPGRTIITVDVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQLKK 743

Query: 584  IKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCN 637
            ++ G E   L++  D  +    +S K SLI  A++  LP    D   ++ +  +H Y+ +
Sbjct: 744  LRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKS 803

Query: 638  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            I + G FV F G+  G    S AVD +  D+SK +Y+ QSV   +L  + +  +  LSLK
Sbjct: 804  ISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLK 863

Query: 698  QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFG 755
                             +E+ +          S +K  +   IGS+++ K+   + N   
Sbjct: 864  APKVKEEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKSVKKNQLN 911

Query: 756  VVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVDLSL 804
            V+++   H         D Y  IT  +   ++ +   VI+  I+   DV K+ + + ++ 
Sbjct: 912  VILAANLHGRVDIAEVFDTYEEITDKKQPLSSYKKDDVIKVKIIGNHDV-KSHKFLPITH 970

Query: 805  KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSI 863
            K         +    + + K+   ++ +++ + Q +   V     N+L L++ P     I
Sbjct: 971  KISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLKARI 1030

Query: 864  GYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSKRAK 922
                ++D N   F +    N +SV     AL    ++  R    + AI ++    +    
Sbjct: 1031 SLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN---- 1081

Query: 923  KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 982
              S+  VG  +   + +I    + L  G    G   IT+  +D S  ++  F + KI   
Sbjct: 1082 -MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KINNV 1139

Query: 983  VTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1040
            +   +++  + NK         ELS++ +      I S       D+  G+ V G V  V
Sbjct: 1140 IPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS-----HEDLKQGEIVDGIVKNV 1187

Query: 1041 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1100
            +++   + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++ + + L L
Sbjct: 1188 NDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-ISLTL 1244

Query: 1101 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFT 1158
            R  +     K +   +D     I  GD+  G I  +     G+ V++    ++ G  H T
Sbjct: 1245 RESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD--FGVFVKLDNTVNVTGLAHIT 1297

Query: 1159 ELKN 1162
            E+ +
Sbjct: 1298 EIAD 1301



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 37/330 (11%)

Query: 92   SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 144
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
             LQ  V SIDR    V            + K    I++  +  G  +  RV  I E  V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 260
            L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L   
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAFED--KINNVIPTTVLSVDEQNKKIELSLRSA 1161

Query: 261  LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 318
                R+  SH  +K G+I D       D+G+ + L          A+V +S +++  +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216

Query: 319  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 375
             +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKNV 1275

Query: 376  DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
              FG  V+    V  +  L H++E    KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|242817707|ref|XP_002487008.1| rRNA biogenesis protein RRP5, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218713473|gb|EED12897.1| rRNA biogenesis protein RRP5, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1810

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 376/1388 (27%), Positives = 673/1388 (48%), Gaps = 172/1388 (12%)

Query: 496  YHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLVSGVVD--VVTPN 549
            +  G   K RI+          LSF  K    P    ED  V LG +V G ++  ++ P 
Sbjct: 506  FKTGSTHKARIIGHNSVDNLYLLSFEKKVIDQPYIRLED--VPLGEVVKGKIEKLLIGPE 563

Query: 550  AV--VVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 605
             +  ++  IA G + G +P+ H AD  L+H    +   + G     ++L ++ E   + L
Sbjct: 564  GIDGLILSIADGIT-GLVPSMHFADTVLQHP---EKKFREGLAISARVLSVNLEKRQMRL 619

Query: 606  SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 665
            + K SL+NS   +  D + I P     G + NI   G  V+F G + GF P S+  +   
Sbjct: 620  TLKKSLLNSDSAIWKDYNDIVPGQQSPGTLINIQPNGATVQFYGTVRGFLPVSEMSEAYI 679

Query: 666  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 725
             D S+ +  GQ V  + + V+  + ++ +S K     ST +   +E F            
Sbjct: 680  KDPSQHFRKGQVVNVHAISVDISSDKLVVSCKDP---STSSEAYREAF------------ 724

Query: 726  KHNGSELK---WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 782
                SE++    V G +     +  + + + +GV         V G  +    A A +  
Sbjct: 725  ----SEIRPGVSVTGTVFEKSSDDLLLKLDKYGVTARLSAVHLVDGDASKAASAFAKIRV 780

Query: 783  GSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN 841
            G  +    +L+  +  RL+ ++ K           S R+A KK       ++L V   V 
Sbjct: 781  GQKLSDLLVLEAKRVHRLIKVTHKP----------SLRKALKKNSLPSTFEELEVGTEVT 830

Query: 842  AIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 900
              V         V  L   N  +    V D ++   P   F   Q++ AT+  +      
Sbjct: 831  GFVRGTTSHGVFVEFLGGLNGLLPRRLVDDEHSN-MPDFGFYPSQALTATIHQIDEDHR- 888

Query: 901  GRLLLLLKAISETETSSSKRAKKK-------------------SSYDVGSLVQAEITEIK 941
             R  L ++ +     S   ++K++                   + Y VG + +A I  IK
Sbjct: 889  -RFTLTMRPVELPTASRQAQSKERPLPEDEKPVNPVDESIQTVAEYTVGKVTKARILSIK 947

Query: 942  PLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK-- 993
              ++ +       GRI ++EV D   ++ +       F++ + +  RI+    A+S++  
Sbjct: 948  ETQINVVLADNLQGRIDVSEVFDKWEDIKDRKQPLQKFRVKEILPVRILGLHDARSHRFL 1007

Query: 994  ---PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1050
                   K  ++ELS KPS +T  E    L  E+  V +G  + G+V  +++++  +++S
Sbjct: 1008 PISHRTSKHPVYELSAKPSFITAGE-RKPLSLEQ--VKVGSSMIGFVNNINDDYLWISLS 1064

Query: 1051 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
             +++ ++  +D + + S L + +  + +G A+   V  ++ +K  L L ++      S  
Sbjct: 1065 PNVRGRVRAIDLSDDLSTLTDLESNYPMGSALKVRVTGVDSDKGHLDLSVK------SGS 1118

Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
            T ++S D +     +G I+ GR++K+      +++Q+   L G V  T++     +D  S
Sbjct: 1119 TRELSFDKLS----KGMILPGRVTKVTEK--QIIMQLSDSLVGAVTITDM-----ADDYS 1167

Query: 1171 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1230
              D       S Y + + ++  ++++ ++ +  F   LSLR S           LS+ + 
Sbjct: 1168 KID------TSIYKKNEILRACIIDVDKSNKKIF---LSLRPS---------KVLSSTLP 1209

Query: 1231 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1290
               + +  I+ L  N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF 
Sbjct: 1210 VRDREITSIDQLKVNDIVRGFVRKVADNGLFVTLGHSVSAYVRISDLSDSYLKEWKDEFQ 1269

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
              +LV GR++ V+  +KR++++LK S   +  ++ I  + +L  G IV G++++VE +G 
Sbjct: 1270 ADQLVKGRIIFVDQENKRLQMSLKESVLDSNYKTPIT-IRDLKPGQIVTGKVRKVEDFGA 1328

Query: 1351 FITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
            FI I+ + N+ GLCH S+++E ++D+   ++ AG+ VK KILK+D ++ +IS G+K+SYF
Sbjct: 1329 FIVIDRSANVSGLCHRSQMAEQNIDDARKLFEAGDIVKAKILKIDPKQEKISFGLKASYF 1388

Query: 1410 KNDADNLQMSSEEESDE--AIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLV------ 1461
            K   D   + SEE SDE  +++E G     S      +++  +++E              
Sbjct: 1389 K---DEEGLDSEEGSDEDLSMDEAGGVELHSDDSGEDMSIGGVEIEDGSDDESESSDDDE 1445

Query: 1462 -LAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQ 1520
             +   + RA      +++ D     D G+S     TD  K + E+    A  K+K  R+ 
Sbjct: 1446 DVTTADERAQNDKGGLDVGDFDWTGDAGLSSTSKITD-GKAVGEE----ASNKKKRIRKP 1500

Query: 1521 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            EI+  +   L+   P++  ++ERL+   P+SS +W++YMAF L + +V+KAR I +RA++
Sbjct: 1501 EIQVDQTGDLDARGPQSVADYERLLLGEPDSSLLWLQYMAFQLELGEVDKAREIGQRAIR 1560

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            +I+I ++ EKLNIWVA  NLEN YG   ++++ +VF++A QY D ++++  L+ +Y ++ 
Sbjct: 1561 SISIGQDTEKLNIWVALLNLENTYGT--DDSLEEVFKKACQYNDTQEIYERLISIYIQSG 1618

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLL---KQQQEGVQAVVQRALLSLPRHKHIKF 1697
            +N+ ADEL    +KK  +S + +       L       +  + +  RAL SLP + H+  
Sbjct: 1619 KNEKADELFQTALKKKVYSGQKFFINYATFLFDTLANPDRGRDLFPRALQSLPSNTHVDT 1678

Query: 1698 ISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1755
              +   LEF+  NG  +RGR++FEG+LS +PKRTDLW+I LD EI+ GD D +R +F+R 
Sbjct: 1679 TCKFIQLEFRSPNGDVERGRTLFEGLLSSFPKRTDLWNILLDLEIKQGDADQVRSVFQRV 1738

Query: 1756 ISLS--------------------LPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQ 1790
            + +S                    L PKK +F FKK+L++E+ +     G E+ +E VK 
Sbjct: 1739 LGISTVLKKKGAVPTPASTETQKKLKPKKARFFFKKWLDFEEKLAAAEGGNEKMVEEVKA 1798

Query: 1791 KAMEYVES 1798
            +A +YV S
Sbjct: 1799 RAADYVNS 1806



 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 311/1299 (23%), Positives = 565/1299 (43%), Gaps = 122/1299 (9%)

Query: 5    GVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDN---------LLPT- 51
            G V  +N  D+ + LP  L G   L   ++  D  ++N + A ++N         L P+ 
Sbjct: 164  GQVTSINSHDIGLALPNNLTGYVPLTAISEVFDKKIENVLNAEDENEDDDSEEDSLDPSD 223

Query: 52   IFHVGQLVSCIVLQLDDDKKEIG----KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
             F+VGQ +   V        E G    K+KI LSL       GLS   + EG ++ A V 
Sbjct: 224  YFYVGQYLRAYVTSTGSSAVEAGTAKIKKKIELSLDPRQANTGLSESDLVEGAMVQASVA 283

Query: 108  SIEDHGYILHFGL--PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 165
            SIEDHG ++  GL      GF+   + A  S I  K G +L  +V  ++ +R +  LSS 
Sbjct: 284  SIEDHGCVMDIGLGKKGAKGFMASTDEAIQSNI--KEGAVLLCIVTGVNASRTIFQLSSK 341

Query: 166  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 225
              T +   +      +I   +PG      + S+ E G++   +     TVD  H      
Sbjct: 342  LQTAASPKSVLKSAPTIQTFLPGTAAEILLTSVTETGLVGKIMGLLDATVDFVHSGANSG 401

Query: 226  TTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLHNRAPPSHVKV-----GDIYD 278
            + N    Y    K+ ARI    P +    VG ++   +L  R  PS  +V     G I D
Sbjct: 402  SFNLTTKYQLGAKIKARITCTFPAAEPFKVGASVLENILEWRRTPSTQEVSSPSIGTILD 461

Query: 279  QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSCVRVRILG 335
             ++V  V+ GLGL ++  S  +    +V IS VA+   E +   +  +K GS  + RI+G
Sbjct: 462  -ARVTTVEPGLGLYVEFGS--LKHLGFVHISRVADGTVESISAEQGAFKTGSTHKARIIG 518

Query: 336  FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKA 390
               ++ L     +    +       DV  G VVKGK+    I  +   G I+    G+  
Sbjct: 519  HNSVDNLYLLSFEKKVIDQPYIRLEDVPLGEVVKGKIEKLLIGPEGIDGLILSIADGITG 578

Query: 391  LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAE 448
            L P  H ++  +  P KKF+ G  +  RVL V  + +++ +T KK+L+ S  AI   Y +
Sbjct: 579  LVPSMHFADTVLQHPEKKFREGLAISARVLSVNLEKRQMRLTLKKSLLNSDSAIWKDYND 638

Query: 449  ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 508
                  + G +  I+ +G  V+FY  V+GF P SE+      +PS  +  GQVV    +S
Sbjct: 639  IVPGQQSPGTLINIQPNGATVQFYGTVRGFLPVSEMSEAYIKDPSQHFRKGQVVNVHAIS 698

Query: 509  SIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 563
               +S ++ +S    P+  SE        ++ G  V+G V   + + +++ +   G +  
Sbjct: 699  VDISSDKLVVS-CKDPSTSSEAYREAFSEIRPGVSVTGTVFEKSSDDLLLKLDKYGVT-A 756

Query: 564  TIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--L 618
             +   HL D     A    + I+ G +   LLVL+ +  + L+  + K SL  + ++  L
Sbjct: 757  RLSAVHLVDGDASKAASAFAKIRVGQKLSDLLVLEAKRVHRLIKVTHKPSLRKALKKNSL 816

Query: 619  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK-TYYVGQS 677
            PS    +   + V G+V      G FV FLG L G  PR + VD + +++    +Y  Q+
Sbjct: 817  PSTFEELEVGTEVTGFVRGTTSHGVFVEFLGGLNGLLPR-RLVDDEHSNMPDFGFYPSQA 875

Query: 678  VRSNILDVNSETGRITLSLKQ-SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            + + I  ++ +  R TL+++     +++  +  +E  L E++    +        ++ V 
Sbjct: 876  LTATIHQIDEDHRRFTLTMRPVELPTASRQAQSKERPLPEDE----KPVNPVDESIQTVA 931

Query: 737  GFIIGSVIEGKVHE----------SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 786
             + +G V + ++            +++    +   E  D +  I   +          ++
Sbjct: 932  EYTVGKVTKARILSIKETQINVVLADNLQGRIDVSEVFDKWEDIKDRKQPLQKFRVKEIL 991

Query: 787  QAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 844
               IL +  A++ R + +S +T     +  +         +RK  + + + V  ++   V
Sbjct: 992  PVRILGLHDARSHRFLPISHRTSKHPVYELSAKPSFITAGERKPLSLEQVKVGSSMIGFV 1051

Query: 845  EIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGR 902
              + ++YL +SL P     +    +S D +T    +  +  G ++   V  +   S  G 
Sbjct: 1052 NNINDDYLWISLSPNVRGRVRAIDLSDDLSTLTDLESNYPMGSALKVRVTGV--DSDKGH 1109

Query: 903  LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 962
            L L +K+ S  E S  K +K       G ++   +T++   ++ ++      G + IT++
Sbjct: 1110 LDLSVKSGSTRELSFDKLSK-------GMILPGRVTKVTEKQIIMQLSDSLVGAVTITDM 1162

Query: 963  NDDKSNVVENLFSNFKIGQTVTARII--AKSNKPDMKKSFLWELSIKPSMLTVSE--IGS 1018
             DD S +  ++   +K  + + A II   KSN    KK F   LS++PS +  S   +  
Sbjct: 1163 ADDYSKIDTSI---YKKNEILRACIIDVDKSN----KKIF---LSLRPSKVLSSTLPVRD 1212

Query: 1019 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1078
            + +     + +   V G+V KV +    +T+   + A + I D     S L+E++  F  
Sbjct: 1213 REITSIDQLKVNDIVRGFVRKVADNGLFVTLGHSVSAYVRISD--LSDSYLKEWKDEFQA 1270

Query: 1079 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISK 1135
             + V G ++ +++E K L++ L+        ++V  SN      I +   G IV G++ K
Sbjct: 1271 DQLVKGRIIFVDQENKRLQMSLK--------ESVLDSNYKTPITIRDLKPGQIVTGKVRK 1322

Query: 1136 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1195
            +      +V+    ++ G  H +++    +            D    ++ G  VK K+L+
Sbjct: 1323 VEDFGAFIVIDRSANVSGLCHRSQMAEQNID-----------DARKLFEAGDIVKAKILK 1371

Query: 1196 IS-RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1233
            I  +  + +F ++ S     +G+ S   SD    +D  G
Sbjct: 1372 IDPKQEKISFGLKASYFKDEEGLDSEEGSDEDLSMDEAG 1410


>gi|156058222|ref|XP_001595034.1| hypothetical protein SS1G_03122 [Sclerotinia sclerotiorum 1980]
 gi|154700910|gb|EDO00649.1| hypothetical protein SS1G_03122 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1789

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 451/1737 (25%), Positives = 774/1737 (44%), Gaps = 211/1737 (12%)

Query: 177  LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI------------------- 217
            ++G+S   LVPG +V  +V  I    + LS     TG V I                   
Sbjct: 140  IEGLSYKRLVPGSLVLGQVSQINATDIALSLPNNLTGYVPITSISDKATERIEAIAAAEE 199

Query: 218  -----------FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA 266
                         L+  F    +   Y      +     +    R + L+L P   +N A
Sbjct: 200  DDVEDELEVQDIDLKKMFSMGQYLRAYVVSTSDDTNTATLGKGKRRIELSLRPQHANN-A 258

Query: 267  PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 326
              S   + +    + V  V+   GL+++I         ++   D+  E V       +EG
Sbjct: 259  VTSQNLIANTTLMASVTSVEDH-GLIMNIGLEDSGIRGFMGAKDIGHEVVLA---DVQEG 314

Query: 327  SCVRVRILGFRH--------LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 378
            +     + G            +    G LK S +     T     PG  V+  ++ V S 
Sbjct: 315  AVFLCMVTGLSSNGKTVKLCADTQKIGNLKKSNYLTDAPTVDAFLPGTAVEILIVDVSSR 374

Query: 379  GAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAELVFRVLGV----KSKRIT 428
            G   +  G V     L H        E E     KKFK+GA++  RV+        +++ 
Sbjct: 375  GVTGKVMGMVDVTADLMHSGTGVMNQELE-----KKFKIGAKVRGRVICTFPNSDPQKLG 429

Query: 429  VT---HKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKH-GCFVRF-YNGVQGF 478
            V+   H  +L   +     +  +  D L     I    I K+E   G FV     G+ GF
Sbjct: 430  VSLLDHVASLSPQQAGKPGNKVDPLDALPLSAIIEEVTIKKVESGVGLFVDVGVKGIPGF 489

Query: 479  APRSELG---LDPGCEPSSMYHVGQVVKCRIMS--SIPASRRINLS-FMMKPTRVSEDDL 532
               S +    ++   E +  Y VG V + R+++  S+     ++L   +++   +  +DL
Sbjct: 490  VHISRVKDGKIETLEETTGPYKVGSVHRGRVLAYNSLDGVYLVSLEKSVLEQAYLRIEDL 549

Query: 533  VKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 587
             K+G +V G V+ +  NA     ++  +A+  S G +P  HLAD  L H    +   K G
Sbjct: 550  -KVGEVVKGKVEKLIVNANGFGGLLVNLAENIS-GLVPETHLADVQLLHP---EKKFKEG 604

Query: 588  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
                 ++L  D     + L+ K +L+NS     +    I       G + NI+ TG  V+
Sbjct: 605  MSVTARVLSTDPGKRQIRLTLKKTLVNSESPAFTSYDGIIVGMQSPGTIVNIMNTGAVVQ 664

Query: 647  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            F G + GF P S+  +    D S+ + VGQ V  ++L V+ E+ ++T+S K         
Sbjct: 665  FYGNIRGFLPVSEMSEAYIQDPSQHFKVGQVVNVHVLKVDPESQKLTVSCKDPSVFGLAQ 724

Query: 707  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
                ++  + E ++ L   K N      ++G  + + +          G +    E+   
Sbjct: 725  QNALKNLKIGEILSALVIEKSNDDISVEIQGLGLKATLP--------VGHLTDGSENKSR 776

Query: 767  YGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 825
              F          +  G V+   A+LD  +  RL+ L+ K   +         + AQ K 
Sbjct: 777  SSF--------KNIRVGQVLTDLAVLDKHEQRRLIVLTNKPALV---------KAAQSKT 819

Query: 826  RKR---EASKDLGVHQTVNAIV-------------EIVKENYLVLSLPEYNHSIGYASVS 869
              R   +  KD  VH  V  I               ++ +N +    PE N  +      
Sbjct: 820  LLRLFDDVKKDRTVHGFVKNITLTAVFVQFGGGLTGLLPKNMI----PEKNLRLPDFGFK 875

Query: 870  DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV 929
             + T +    +  NG       +A  +S    +  L      +      +  K      +
Sbjct: 876  KWQTVEVKVIKIDNGLRRFLLSLADATSDKKPQESLAPGTNQDAVNPVDETIKSIDDITL 935

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLFSNFKIGQTVTARI 987
            G L +A I+ +K  ++ ++      GRI +++  D  S +   +    +F   Q +  R+
Sbjct: 936  GRLTKARISSVKDTQVNVQLADNIQGRIDVSQAFDSWSEIKSKKQPLKSFSPKQIIDVRV 995

Query: 988  IAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1038
            +   +  + +         K+ ++ELS KPS  T +      L +   + +G     +V 
Sbjct: 996  LGIHDARNHRFLPISHRSGKTLVFELSAKPSDQTEAAQDPVSLDK---IKLGSSWLAFVN 1052

Query: 1039 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1098
             V  +   + +S +++ ++  LD + + S L++ +  F IG A+  HV  ++ E   L L
Sbjct: 1053 NVGADCLWVNLSPNVRGRISALDVSDDVSLLKDLEANFPIGSAIRVHVKGVDVETNRLDL 1112

Query: 1099 VLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1156
              R  QD               TF  + +G IV G+++++      ++VQI   +   ++
Sbjct: 1113 SARSSQDS-----------EALTFDRLSKGMIVPGKVTRV--NERQVMVQITDSISAPIN 1159

Query: 1157 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1216
             T+L +          D  + DP S Y +   V+  V ++    +    V LS R+S   
Sbjct: 1160 LTDLCD----------DFSEADP-SKYSKNDIVRVCVTDLDIPNK---RVRLSTRAS--- 1202

Query: 1217 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1276
                NSS    D +     +  I  L  N IV+G+VK+V  KG F+ L   + A V +S+
Sbjct: 1203 -RVMNSSAAVQDAE-----ISSISQLKVNDIVRGFVKHVADKGLFVNLGGNVTAYVRISD 1256

Query: 1277 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS--NLHV 1334
            LSD Y++  + EF + +LV G+V  V+ +   ++++LK S      +  I  L+  ++HV
Sbjct: 1257 LSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHIQLSLKPS---VIDKDYIAPLTFNDIHV 1313

Query: 1335 GDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1393
            G ++ G+I++VE +G+FI ++ + N+ GLCH SE++E  V +++ +Y  G++VK  +LK+
Sbjct: 1314 GQVITGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSDGDEVKAIVLKM 1373

Query: 1394 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA----VQD 1449
            D EK+RIS  MK+S+F+ D +     SE++  E ++        +  E+        VQD
Sbjct: 1374 DPEKKRISFSMKASHFE-DGEESDDGSEDDGVEGVKLDNMDLDDNDDESEGGVEFDDVQD 1432

Query: 1450 MDMESEDGGSLVLAQIESRA---SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKN 1506
            ++  +ED      +  E +     VP L     D   D+ N          E + ++EK 
Sbjct: 1433 LESATEDADEAFDSDEEMQDVGDDVPALSAGGFDWSADILNQADGQSNADSEEECVEEK- 1491

Query: 1507 NRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1566
                   +K +R+ EI+      L+ + P++  +FERL+   P+SS +W +YMAF + ++
Sbjct: 1492 ------PKKNKRKAEIKIDRTGDLDANGPQSVSDFERLLLGQPDSSSLWTQYMAFQMQLS 1545

Query: 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626
            ++ KAR +AERA++TIN+REE EKLNIW+A  NLE  YGN  +E V +VF+RA QY D +
Sbjct: 1546 ELGKAREVAERAIKTINMREETEKLNIWLALLNLEIAYGN--DETVEEVFKRACQYNDAQ 1603

Query: 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQR 1684
            +VH  L  +Y ++ +N+ ADEL   + KKF  S  VW+     L       +  +A++ R
Sbjct: 1604 EVHERLASIYIQSGKNEKADELFQTLTKKFSQSPTVWVNYAHFLFNTLGSPDRGRALLAR 1663

Query: 1685 ALLSLPRHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1742
            A  SLP H H+    + A LEF++  G  +RGR++FEG+L+++ KR D+W   LD EI+ 
Sbjct: 1664 ATQSLPPHTHLPLTLKFAALEFRSEHGSPERGRTIFEGVLAKWSKRLDIWGQLLDLEIKA 1723

Query: 1743 GDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            GD  + RG+FER   +  L PK  K  FK++ E+E+  G+++  E V+  A E+V S
Sbjct: 1724 GDAAIARGIFERVTRIKGLKPKGAKGWFKRWSEWEEVNGDKKSQERVRAIAEEWVRS 1780



 Score =  207 bits (526), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 291/1259 (23%), Positives = 529/1259 (42%), Gaps = 139/1259 (11%)

Query: 5    GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA--------------NEDNLLP 50
            G V+++N  D+ + LP  L G        D   +  IEA               +D  L 
Sbjct: 156  GQVSQINATDIALSLPNNLTGYVPITSISDKATE-RIEAIAAAEEDDVEDELEVQDIDLK 214

Query: 51   TIFHVGQLVSCIVLQLDDDKKEI----GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 106
             +F +GQ +   V+   DD        GKR+I LSLR       ++ + +     L A V
Sbjct: 215  KMFSMGQYLRAYVVSTSDDTNTATLGKGKRRIELSLRPQHANNAVTSQNLIANTTLMASV 274

Query: 107  KSIEDHGYILHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLS 163
             S+EDHG I++ GL      GF+   ++     + DV+ G +   +V  +    K V L 
Sbjct: 275  TSVEDHGLIMNIGLEDSGIRGFMGAKDIGHEVVLADVQEGAVFLCMVTGLSSNGKTVKLC 334

Query: 164  SDPDTVSKCVTKD--LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
            +D   +      +      ++D  +PG  V   +  +   GV    +     T D+ H  
Sbjct: 335  ADTQKIGNLKKSNYLTDAPTVDAFLPGTAVEILIVDVSSRGVTGKVMGMVDVTADLMHSG 394

Query: 222  NTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLLH----------NRAPP- 268
                    +  +    KV  R++   P S  + +G++L  ++            N+  P 
Sbjct: 395  TGVMNQELEKKFKIGAKVRGRVICTFPNSDPQKLGVSLLDHVASLSPQQAGKPGNKVDPL 454

Query: 269  SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKE 325
              + +  I ++  + +V+ G+GL +D+    +  P +V IS V + ++  LE+    YK 
Sbjct: 455  DALPLSAIIEEVTIKKVESGVGLFVDVGVKGI--PGFVHISRVKDGKIETLEETTGPYKV 512

Query: 326  GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSFGA- 380
            GS  R R+L +  L+G+    L+ S  E       D+K G VVKGKV    +  + FG  
Sbjct: 513  GSVHRGRVLAYNSLDGVYLVSLEKSVLEQAYLRIEDLKVGEVVKGKVEKLIVNANGFGGL 572

Query: 381  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKS 438
            +V     +  L P  H+++ +++ P KKFK G  +  RVL      ++I +T KKTLV S
Sbjct: 573  LVNLAENISGLVPETHLADVQLLHPEKKFKEGMSVTARVLSTDPGKRQIRLTLKKTLVNS 632

Query: 439  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
            +    +SY      + + G I  I   G  V+FY  ++GF P SE+      +PS  + V
Sbjct: 633  ESPAFTSYDGIIVGMQSPGTIVNIMNTGAVVQFYGNIRGFLPVSEMSEAYIQDPSQHFKV 692

Query: 499  GQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 552
            GQVV   ++   P S+++ +S      F +      ++  +K+G ++S +V   + + + 
Sbjct: 693  GQVVNVHVLKVDPESQKLTVSCKDPSVFGLAQQNALKN--LKIGEILSALVIEKSNDDIS 750

Query: 553  VYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSN--LLLSAKY 609
            V +   G  K T+P  HL D  E+ +      I+ G     L VLD       ++L+ K 
Sbjct: 751  VEIQGLGL-KATLPVGHLTDGSENKSRSSFKNIRVGQVLTDLAVLDKHEQRRLIVLTNKP 809

Query: 610  SLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 667
            +L+ +AQ   L      +  +  VHG+V NI  T  FV+F G LTG  P++   +     
Sbjct: 810  ALVKAAQSKTLLRLFDDVKKDRTVHGFVKNITLTAVFVQFGGGLTGLLPKNMIPEKNLRL 869

Query: 668  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 727
                +   Q+V   ++ +++   R  LSL      +T     QE          +     
Sbjct: 870  PDFGFKKWQTVEVKVIKIDNGLRRFLLSL----ADATSDKKPQESLAPGTNQDAVNPVDE 925

Query: 728  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQ 787
                +K ++   +G + + ++    D  V V   ++  + G I   Q   +  E  S  Q
Sbjct: 926  T---IKSIDDITLGRLTKARISSVKDTQVNVQLADN--IQGRIDVSQAFDSWSEIKSKKQ 980

Query: 788  A-------AILDV-------AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 833
                     I+DV       A+  R + +S ++     F E ++    Q +  +   S D
Sbjct: 981  PLKSFSPKQIIDVRVLGIHDARNHRFLPISHRSGKTLVF-ELSAKPSDQTEAAQDPVSLD 1039

Query: 834  -LGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIAT 890
             + +  +  A V  V  + L ++L P     I    VS D +  K  +  F  G ++   
Sbjct: 1040 KIKLGSSWLAFVNNVGADCLWVNLSPNVRGRISALDVSDDVSLLKDLEANFPIGSAIRVH 1099

Query: 891  VMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFG 950
            V  +   +   RL L  ++  ++E  +  R  K      G +V  ++T +   ++ ++  
Sbjct: 1100 VKGVDVETN--RLDLSARSSQDSEALTFDRLSK------GMIVPGKVTRVNERQVMVQIT 1151

Query: 951  IGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSM 1010
                  I++T++ DD S    + +S                 K D+ +  + +L I    
Sbjct: 1152 DSISAPINLTDLCDDFSEADPSKYS-----------------KNDIVRVCVTDLDIPNKR 1194

Query: 1011 LTVSEIGSKLL-----FEECDVS------IGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1059
            + +S   S+++      ++ ++S      +   V G+V  V ++   + +  ++ A + I
Sbjct: 1195 VRLSTRASRVMNSSAAVQDAEISSISQLKVNDIVRGFVKHVADKGLFVNLGGNVTAYVRI 1254

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF---QDGISDKTVDISN 1116
             D     S +++++  F + + V G V  +++    ++L L+P    +D I+  T    N
Sbjct: 1255 SD--LSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHIQLSLKPSVIDKDYIAPLTF---N 1309

Query: 1117 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1175
            D     IH G ++ G+I K+      +VV    ++ G  H +E+    V D    Y +G
Sbjct: 1310 D-----IHVGQVITGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSDG 1363



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 36/284 (12%)

Query: 174  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF----PTTNW 229
            ++D + ++ D L  GM+V  +V  + E  VM+      +  +++  L + F    P+   
Sbjct: 1117 SQDSEALTFDRLSKGMIVPGKVTRVNERQVMVQITDSISAPINLTDLCDDFSEADPSKYS 1176

Query: 230  KNDYNQHKKVNARILFVD---PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 286
            KND         R+   D   P  R    T    ++++ A     ++  I  Q KV  + 
Sbjct: 1177 KNDI-------VRVCVTDLDIPNKRVRLSTRASRVMNSSAAVQDAEISSI-SQLKVNDIV 1228

Query: 287  RGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG---- 335
            RG        GL +++     +  AYV ISD+++  ++  + +++    V+ ++      
Sbjct: 1229 RGFVKHVADKGLFVNLGG---NVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEV 1285

Query: 336  FRHLE-GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALC 392
              H++  L   ++       L F  +D+  G V+ GK+  V+ FG  +   G   V  LC
Sbjct: 1286 LNHIQLSLKPSVIDKDYIAPLTF--NDIHVGQVITGKIRKVEDFGVFIVVDGSANVSGLC 1343

Query: 393  PLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 434
                M+E  +    K +  G E+   VL +  + KRI+ + K +
Sbjct: 1344 HQSEMAEKRVHDVKKLYSDGDEVKAIVLKMDPEKKRISFSMKAS 1387


>gi|159129996|gb|EDP55110.1| rRNA biogenesis protein RRP5, putative [Aspergillus fumigatus A1163]
          Length = 1822

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 368/1347 (27%), Positives = 660/1347 (48%), Gaps = 163/1347 (12%)

Query: 533  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGTVVKGKIEKLLIGPAGVDGLIVTLADGIT-GLVPSMHFADTALQFPEKK--FREGM 610

Query: 589  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
                ++L ++ +   + L+ K SL+NS   +  D   I P S   G + NI   G  V+F
Sbjct: 611  TITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQF 670

Query: 648  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVSCKDP------ST 724

Query: 708  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHES----NDFGVVVSFEE 762
            F + +    EKI                 G  + G+V E  V +     ++FG++   + 
Sbjct: 725  FTETYRKAFEKIQ---------------PGLRVTGTVFEKSVDDVLLKLDEFGLIARLDL 769

Query: 763  HSDVYGFITHHQLAGATVESGSVIQAA-ILDVAKAERLVDLSLKTVFIDRFREANSNRQA 821
               V G  +    A + +  G  +    +LD+ +A RL+ +S +           S ++A
Sbjct: 770  AHVVDGPESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKA 819

Query: 822  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQ 878
             K+       +D+     V   V  +  + L +        IG      ++D N  K P 
Sbjct: 820  AKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEF--LGGIIGLVPKRLLADENVNK-PD 876

Query: 879  KQFLNGQSVIATVMAL------------PSSSTAG----RLLLLLKAISETETSSSKRAK 922
               +  Q V ATV ++            PS +T+            +  E   +  +  K
Sbjct: 877  YDMVKSQLVTATVHSIDRDFQRFILSMKPSEATSAGPKKPAPKPTPSNDEVTNAVDESIK 936

Query: 923  KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIG 980
              S +  G  V  ++  +K  ++ ++      GRI ++EV D   ++ +       F+  
Sbjct: 937  SMSDFTFGRTVNCKVVSVKATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFRPK 996

Query: 981  QTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1031
            Q ++ARI+    A+S+K  P   +S    ++ELS+KPS L  +   S L  E+  V +G 
Sbjct: 997  QLISARILGIHDARSHKFLPISHRSGKFPVFELSVKPSFLQAAN-PSPLNLEQ--VQVGS 1053

Query: 1032 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1091
               G+V  V ++   + +S +++ +L  +D++ + S   + ++ F IG A+  HV +++ 
Sbjct: 1054 TWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAAVDT 1113

Query: 1092 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1151
            EK  L L  +     +S + + +           G I+ GR++K+      +++Q+   +
Sbjct: 1114 EKGRLDLTAKQRSSKLSFEDISV-----------GMILPGRVTKVTEK--QVIMQLSDTV 1160

Query: 1152 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1211
             G V+  +L +          D  + +P + Y +   ++  V+ + +  +    + LSLR
Sbjct: 1161 VGAVNLIDLAD----------DYSKANP-TVYHKNDVLRACVVGVDKANK---KISLSLR 1206

Query: 1212 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1271
             S           LS+ +      +  ++ L  N +V+G+VK V   G F+ L   + A 
Sbjct: 1207 PS---------KVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAY 1257

Query: 1272 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1331
            V +S+LSD Y++  +  F + +LV GRV  V+P   R++++LK S      ++ I  + +
Sbjct: 1258 VRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPIT-MHD 1316

Query: 1332 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1390
            L VG  V G++++VE +G FI I+ + N+ GLCH SE+++  VD+  T+Y  G+ VK KI
Sbjct: 1317 LKVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKI 1376

Query: 1391 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE---AIEEVGSYNRSSLLENSSVAV 1447
            +K+D+E  +IS  +K+S+FK+  +  +  S+EE D    +++ +G  +     ++     
Sbjct: 1377 IKIDRESGKISFSLKASHFKDHDEEDESGSDEEGDSNGVSLDGMGGVDVEGSDDSEDDDD 1436

Query: 1448 Q-------DMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1500
                    D++ +SE  G      +E  ++    +  L     D    +  ++    ++ 
Sbjct: 1437 DDESMGGVDLEEDSESDGGESDEDVEMTSAPVKRDGGLGATGFDWSGNVKDDEDEAMQSD 1496

Query: 1501 TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1560
            + DE N+R  KKK ++   Q  R  E   L+ + P++  ++ERL+   P+SS +W+KYMA
Sbjct: 1497 SDDEDNSRKKKKKSRKPEIQVDRTGE---LDANGPQSVADYERLLLGEPDSSLLWLKYMA 1553

Query: 1561 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1620
            F L + +VEKAR IAERAL+TI+I ++ EKLNIWVA  NLEN YGN  ++++ +VF+RA 
Sbjct: 1554 FQLELGEVEKAREIAERALRTISIGQDTEKLNIWVALLNLENTYGN--DDSLDEVFKRAC 1611

Query: 1621 QYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EG 1677
            QY D ++++  +  +Y ++ +N+ ADEL    + KK  ++ K +L     L       + 
Sbjct: 1612 QYNDTQEIYDRMTSIYIQSGKNEKADELFQTALKKKISNTPKFFLNYASFLFDSMAAPDR 1671

Query: 1678 VQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIY 1735
             ++++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ 
Sbjct: 1672 ARSLLPRALQSLPSHTHVELTSKFGQLEFRSPNGDVERGRTVFEGLLSSFPKRVDLWNVL 1731

Query: 1736 LDQEIRLGDVDLIRGLFERAISL-------------------SLPPKKMKFLFKKYLEYE 1776
            LD EI+ GD + +R LFER + +                    L PK+ KF FKK+L +E
Sbjct: 1732 LDLEIKNGDAEQVRRLFERVLGIRDAKKGAAAAVATPTDASKKLRPKQAKFFFKKWLSFE 1791

Query: 1777 KSV-----GEEERIEYVKQKAMEYVES 1798
            + +     G+E+ +E +K +A +YV+S
Sbjct: 1792 EKLAAANGGDEKMVEEIKARAADYVKS 1818



 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 191/761 (25%), Positives = 329/761 (43%), Gaps = 72/761 (9%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN-EDNLLPTI----------- 52
           G V+ +N  D+ + LP  L G      A+   LD +IE    DN                
Sbjct: 162 GQVSSINAHDIGLSLPNNLTGYVPLT-AVSKKLDEKIEKILNDNDNEDSDAEEEDGDDDS 220

Query: 53  ------FHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 103
                 F++GQ +   V+ +     D     K++I LS+       GLS   ++    + 
Sbjct: 221 LDLTDYFYLGQYLRASVVSVGSNAADAPSKNKKRIELSVDPRQANAGLSKSDLEVNTAIQ 280

Query: 104 AYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVV 160
           A V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V   +    VV
Sbjct: 281 ASVVSVEDHGLVMDLGIEGADVKGFMSKKEIDPKTDYSSIKEGSVFLCMVTGQNANGSVV 340

Query: 161 YLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 218
            LS++  +              +I+  +PG      +  +  +G++   +     TVD+ 
Sbjct: 341 KLSANLQSAGSIKKSHYLSTASTINSFLPGTAAEILLTEVSSSGLIGKIMGMLDATVDLV 400

Query: 219 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL----HNRAPPSH-- 270
                    +    +    K+  RI+   P S    VG ++  ++L        P +   
Sbjct: 401 QSGGNSGKDDLTKKFQMGAKIKGRIVCTFPASEPFKVGFSILDHVLKFATEGHGPGTSED 460

Query: 271 -VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEG 326
              +  I  ++KVV VD G+G+ + + ST      +V +S +A+ +V  +  +   ++  
Sbjct: 461 APAISAIIPETKVVMVDPGMGVYVQMGST--KHVGFVHVSRLADGKVEHIAPEHGPFRID 518

Query: 327 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV-------IAVDSFG 379
           S    R++G+   +GL     +    E       DV  G VVKGK+         VD  G
Sbjct: 519 SVHEARVVGYSAFDGLYLLSFERKVIEQPFLRLEDVTVGTVVKGKIEKLLIGPAGVD--G 576

Query: 380 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 437
            IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L+ 
Sbjct: 577 LIVTLADGITGLVPSMHFADTALQFPEKKFREGMTITARILSVNLQKRQIRLTLKKSLLN 636

Query: 438 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 497
           S+ AI   Y +      + G I  I+ HG  V+FY  V+GF P SE+      +PS  + 
Sbjct: 637 SESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFR 696

Query: 498 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVV 552
            GQVV    +S  PA  ++ +S    P+  +E      + ++ G  V+G V   + + V+
Sbjct: 697 QGQVVNVHALSVDPALGKLAVS-CKDPSTFTETYRKAFEKIQPGLRVTGTVFEKSVDDVL 755

Query: 553 VYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSNLLL--SAKY 609
           + +   G     +   H+ D  E   +   S I+ G + + LLVLD + +  L+  SA+ 
Sbjct: 756 LKLDEFGLI-ARLDLAHVVDGPESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA 814

Query: 610 SLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR----SKAVDG 663
           SL  +A+Q  LP+    I   + V G+V NI   G F+ FLG + G  P+     + V+ 
Sbjct: 815 SLKKAAKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEFLGGIIGLVPKRLLADENVNK 874

Query: 664 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
              D+ K+  V  +V S    ++ +  R  LS+K S  +S 
Sbjct: 875 PDYDMVKSQLVTATVHS----IDRDFQRFILSMKPSEATSA 911



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 142/315 (45%), Gaps = 39/315 (12%)

Query: 407  KKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
            K F +G+ L   V  V ++  R+ +T K+    SKL    S+ + +  +I  G +TK+ +
Sbjct: 1096 KHFPIGSALKVHVAAVDTEKGRLDLTAKQR--SSKL----SFEDISVGMILPGRVTKVTE 1149

Query: 465  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 524
                ++  + V G     +L  D      ++YH   V++  ++    A+++I+LS  ++P
Sbjct: 1150 KQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANKKISLS--LRP 1207

Query: 525  TRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLA 571
            ++V    L            +K+  +V G V  V  + + V +   G+     +    L+
Sbjct: 1208 SKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTL---GHDVTAYVRVSDLS 1264

Query: 572  DHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 626
            D     + +K   K  ++ DQL+     V+D E   L +S K S+++   + P     + 
Sbjct: 1265 D-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLK 1318

Query: 627  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
                V G V  + E G F+       ++G   RS+  D +  D    Y  G  V++ I+ 
Sbjct: 1319 VGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKIIK 1378

Query: 685  VNSETGRITLSLKQS 699
            ++ E+G+I+ SLK S
Sbjct: 1379 IDRESGKISFSLKAS 1393



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 169/386 (43%), Gaps = 59/386 (15%)

Query: 52   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 98
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 992  FFRPKQLISARILGIHDARSHKFLPISHRSGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1051

Query: 99   GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 152
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1052 GSTWVGFVNNVADDCLWINLS-PNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAA 1110

Query: 153  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
            +D  +  + L++   + SK   +D   IS+ +++PG     RV  + E  V++       
Sbjct: 1111 VDTEKGRLDLTAKQRS-SKLSFED---ISVGMILPG-----RVTKVTEKQVIMQLSDTVV 1161

Query: 213  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 268
            G V++  L + +    PT   KND      + A ++ VD  ++ + L+L P  + + + P
Sbjct: 1162 GAVNLIDLADDYSKANPTVYHKNDV-----LRACVVGVDKANKKISLSLRPSKVLSSSLP 1216

Query: 269  ---------SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 318
                       +KV D+  +  V RV D GL + L    T     AYV +SD+++  +++
Sbjct: 1217 VQDPEITSMKQLKVNDVV-RGFVKRVADSGLFVTLGHDVT-----AYVRVSDLSDSYLKE 1270

Query: 319  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAV 375
             +  ++    V+ R+      +G     LK S  +       T  D+K G  V GKV  V
Sbjct: 1271 WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQFVTGKVRKV 1330

Query: 376  DSFGA--IVQFPGGVKALCPLPHMSE 399
            + FGA  ++     +  LC    M++
Sbjct: 1331 EEFGAFIVIDRSANISGLCHRSEMAD 1356



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 157/363 (43%), Gaps = 34/363 (9%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSC 61
            W G V  V +  L I L   +RG  R  DA D + L  ++E +        F +G  +  
Sbjct: 1055 WVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKH--------FPIGSALKV 1106

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 121
             V  +D +K   G+  +    R S     LS E +  GM+L   V  + +   I+     
Sbjct: 1107 HVAAVDTEK---GRLDLTAKQRSS----KLSFEDISVGMILPGRVTKVTEKQVIMQLS-D 1158

Query: 122  SFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVT 174
            +  G +   +LA++      P +     +L+  V  +D+  K + LS  P  V  S    
Sbjct: 1159 TVVGAVNLIDLADDYS-KANPTVYHKNDVLRACVVGVDKANKKISLSLRPSKVLSSSLPV 1217

Query: 175  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
            +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L +++    WK+ + 
Sbjct: 1218 QDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDSY-LKEWKDSFQ 1276

Query: 235  QHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLG 290
              + V  R+  VDP    + ++L   +L    +AP +   +KVG  +   KV +V+    
Sbjct: 1277 VDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQ-FVTGKVRKVEEFGA 1335

Query: 291  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
             ++   S  +S   +   S++A++ V      Y+EG  V+ +I+      G  +  LKAS
Sbjct: 1336 FIVIDRSANISGLCHR--SEMADKRVDDARTLYEEGDLVKAKIIKIDRESGKISFSLKAS 1393

Query: 351  AFE 353
             F+
Sbjct: 1394 HFK 1396


>gi|67523381|ref|XP_659751.1| hypothetical protein AN2147.2 [Aspergillus nidulans FGSC A4]
 gi|40745035|gb|EAA64191.1| hypothetical protein AN2147.2 [Aspergillus nidulans FGSC A4]
 gi|259487526|tpe|CBF86270.1| TPA: rRNA biogenesis protein RRP5, putative (AFU_orthologue;
            AFUA_2G16040) [Aspergillus nidulans FGSC A4]
          Length = 1780

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 447/1765 (25%), Positives = 801/1765 (45%), Gaps = 275/1765 (15%)

Query: 177  LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV--------------------- 215
            ++G+S   LVPG ++  +V SI  + + +S     TG V                     
Sbjct: 144  IEGLSFKRLVPGALILGQVSSINAHNIGISLPNNLTGYVPLTSVSKTLESKIEKMLEEDE 203

Query: 216  ----------DIFHLQN---TFPTTNWKNDYNQHKKVNARI-LFVDPTSRAVGLTLNPYL 261
                      D F+L     T+  +      +   K   RI L +DP S   GL     +
Sbjct: 204  DSDEEEFDLHDYFYLGQYLRTYVVSVGNKSADASSKSKKRIELSIDPRSANTGLQKTDLV 263

Query: 262  LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 321
            ++     S V V D              GL++D+         +++  ++   + R    
Sbjct: 264  VNAAVQASVVSVED-------------HGLVMDLGIEGTDVRGFMSSKEI---DPRTDYS 307

Query: 322  KYKEGSCVRVRILGFRHLEG---------LATGILKASAFEGLVFTHSDVKPGMVVKGKV 372
              KEGS     + G ++  G          ++G +K S F  +  T +   PG+  +  +
Sbjct: 308  TIKEGSVFLCMVTG-QNANGNVIKLSANLQSSGSIKKSHFLSVAPTINSFVPGVAAEILL 366

Query: 373  IAVDSFGAIVQFPGGVKALCPLPH----MSEFEIVKPGKKFKVGAELVFRVL----GVKS 424
              V S G I +  G +     L H      + ++ K   K+  GA++  R+     G + 
Sbjct: 367  TDVSSTGMIGKIMGMLDTTVDLVHSGGATGKTDLTK---KYHNGAKIKGRISCTFPGSEP 423

Query: 425  KRITVTH----KKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNGVQ-GF 478
             +I  +     +K   +      S  A A   +I    I  ++   G +V+  +    GF
Sbjct: 424  YKIGFSMLDHVQKFSAEGHGPNSSDDAPAISAVIPEATIVNVDPGLGVYVKIGSTKHMGF 483

Query: 479  APRSELGLDPGCEPSSMYH----VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
               S L  D   E  S  H    VG   + R++         +LSF  K   V     ++
Sbjct: 484  VHVSRLA-DGQVETISSDHGPFKVGTTHEARVVGYSAIDNLYSLSFERK---VINQPFLR 539

Query: 535  LGSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 585
            L  +  G V  VT   V+V           +  G + G IP+ H AD        K   +
Sbjct: 540  LEDVTLGAVVKVTITKVLVGESGVTGLIVSLTDGIT-GFIPSVHFADTRLQFPEKK--FR 596

Query: 586  PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
             G     ++L ++ E   + L+ K SL+N+   +  D   I P +   G + NI+  G  
Sbjct: 597  EGLSITARVLSVNLEKREVRLTLKKSLLNTEAAVWKDYRDILPGAQSPGTIINILPNGAV 656

Query: 645  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
            V+F G + G+   S+  +    D S+ + +GQ V  + L+V++  G++++S +       
Sbjct: 657  VQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHALNVDASQGKLSVSCR------- 709

Query: 705  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 764
            D S + + +                +  K ++    G  + G V E +D  V++  E+  
Sbjct: 710  DQSLLADSYR---------------TAFKTIQP---GQSVTGTVFEKSDDYVLLRLEDLG 751

Query: 765  DVYGFITHHQLA-GATVESGSVI----------QAAILDVAKAERLVDLSLKTVFIDRFR 813
             +   +   Q+A G+  +  S +          +  +LDV +A RL+ ++ +        
Sbjct: 752  GLVARLGVGQVADGSASKRSSTLSKIRVGQKLNELVVLDVHRAHRLIHVTNRA------- 804

Query: 814  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA-----SV 868
               S ++A K+       +DL     V   +  +    L +        IG         
Sbjct: 805  ---SLKKATKEGNMPSTFEDLREGAEVTGFIRNITPTGLFVQF--LGGLIGLVPRRLVGS 859

Query: 869  SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD 928
             D N  +F +  F   Q V ATV +L +     R +L +     T     K + KKS+ +
Sbjct: 860  EDSNKSEFGKANF---QVVSATVHSLDTDFR--RFILSMDPAEATHAGPKKESTKKSAKE 914

Query: 929  ------------------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
                                    VG +++ +I  +K  ++ +K      GRI ++EV D
Sbjct: 915  TAAAGDESLANPVDETLKAKSDITVGRVLKCKINSVKGTQINVKLADNVQGRIDVSEVFD 974

Query: 965  DKSNVVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTV 1013
               ++ +      +F+ GQ +TA+++   +              K  ++ELS+KP  +  
Sbjct: 975  SWEDISDKKQPLKHFRPGQVITAKVLGLHDARSYTYLPISHRTGKFNVYELSMKPKFVK- 1033

Query: 1014 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1073
            ++  + L  ++  V  G    G+V  V N++  +++S +++ +L  +D++ + S L + +
Sbjct: 1034 ADNATPLTIDQ--VQAGSSSFGFVNNVSNDFFWVSLSPNVRGRLRFIDASDDISLLADIE 1091

Query: 1074 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1133
            +++ IG A+   V  ++ EK  + L  R       +++  ++ D++      G ++  R+
Sbjct: 1092 KQYPIGCALKFRVTGVDAEKGHIDLSAR-------ERSESLTFDDLSV----GMVLPTRV 1140

Query: 1134 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            +++      +++Q+   L G V       I ++D  S     + DP   Y + + V+  +
Sbjct: 1141 TRVTDKQ--VIMQLNNTLVGAVDL-----INMADDFS-----KADP-HAYHKNEVVRSCI 1187

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            + + +  R    + LSLR S           LS+ +      +  +E +  N I++G+V+
Sbjct: 1188 IGVDKANR---KIHLSLRPS---------KVLSSSLPVQDPEITSMEQVKVNDIIRGFVR 1235

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             V+  G F+ +   + A + +S+LSD Y++  +  F +G+LV GRV  V+P +K+++++L
Sbjct: 1236 QVSDGGLFVTVGHNIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSL 1295

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDH 1372
            K S    + ++ I  L +L  G IV G++++VE +G FI I+ ++N+ GLCH +E+++  
Sbjct: 1296 KDSVLDPSYKAPIT-LYDLKPGQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTR 1354

Query: 1373 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVG 1432
            V++  T+Y  G+ VK K+LKVD+++ +IS G+K+SYF +DA++ + S  E+SD     + 
Sbjct: 1355 VEDARTLYEEGDAVKAKVLKVDRDQGKISFGLKASYFNDDAED-ESSGNEDSDSDGVSLD 1413

Query: 1433 SYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD-------- 1484
            S+    L E+      D    S  G  L        +        + DE  +        
Sbjct: 1414 SFGGVELEESGESDEDDDSDVSMGGMDLEDESGSEESEEEEEGDAVVDEPTNKIRKGGLG 1473

Query: 1485 ---MD-NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDE 1540
                D NG +Q+    DEA   D  +     +K+++ R+ EI       L+ + P++  +
Sbjct: 1474 AVGFDWNGNTQDD--EDEAMQSDSDDEDKGIQKKRKHRQPEILVDRTGELDANGPQSVAD 1531

Query: 1541 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1600
            +ERL+   PNSS +W+KYMAF L + +VEKAR IAERAL+TI I ++ EKLNIWVA  NL
Sbjct: 1532 YERLLLGEPNSSLLWLKYMAFQLELGEVEKAREIAERALRTITIGQDTEKLNIWVAMLNL 1591

Query: 1601 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKH 1658
            EN YG+  ++ + +VF+RA QY D ++++  L  +Y ++ +N+ ADEL    +KK  F +
Sbjct: 1592 ENTYGD--DDTLEEVFKRACQYNDTQEIYERLTSIYIQSGKNEKADELFKTALKKKVFPN 1649

Query: 1659 SCKVWLRRVQRL---LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADR 1713
            S K ++     L   +     G + ++ RAL SLP++ H++  S+ A LEF+  NG  +R
Sbjct: 1650 SPKFFINYATFLYDTMAAPDRG-RGLLSRALQSLPKNTHVETTSKFAQLEFRSPNGDVER 1708

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
            GR++FEG+LS +PKR DLW++ LD EI+ GDV+  R                 F FKK+L
Sbjct: 1709 GRTVFEGLLSSFPKRVDLWNVLLDLEIKNGDVEQAR-----------------FFFKKWL 1751

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVES 1798
            ++E+  G+E+ +E +K KA EYV+S
Sbjct: 1752 DFEEKKGDEKTVEEIKAKAAEYVKS 1776



 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 169/746 (22%), Positives = 325/746 (43%), Gaps = 62/746 (8%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE---------ANEDNLLPTIF 53
           + G V+ +N  ++ I LP  L G      ++   L+++IE           E+  L   F
Sbjct: 158 ILGQVSSINAHNIGISLPNNLTGYVPLT-SVSKTLESKIEKMLEEDEDSDEEEFDLHDYF 216

Query: 54  HVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 110
           ++GQ +   V+ + +   D     K++I LS+       GL    +     + A V S+E
Sbjct: 217 YLGQYLRTYVVSVGNKSADASSKSKKRIELSIDPRSANTGLQKTDLVVNAAVQASVVSVE 276

Query: 111 DHGYILHFGL--PSFTGFL------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 162
           DHG ++  G+      GF+      PR + +      +K G +   +V   +    V+ L
Sbjct: 277 DHGLVMDLGIEGTDVRGFMSSKEIDPRTDYST-----IKEGSVFLCMVTGQNANGNVIKL 331

Query: 163 SSDPDTVSKCVTKDLKGI--SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 220
           S++  +           +  +I+  VPG+     +  +   G++   +     TVD+ H 
Sbjct: 332 SANLQSSGSIKKSHFLSVAPTINSFVPGVAAEILLTDVSSTGMIGKIMGMLDTTVDLVHS 391

Query: 221 QNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTL----NPYLLHNRAPPSH---V 271
                 T+    Y+   K+  RI    P S    +G ++      +      P S     
Sbjct: 392 GGATGKTDLTKKYHNGAKIKGRISCTFPGSEPYKIGFSMLDHVQKFSAEGHGPNSSDDAP 451

Query: 272 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSC 328
            +  +  ++ +V VD GLG+ + I ST      +V +S +A+ +V  +      +K G+ 
Sbjct: 452 AISAVIPEATIVNVDPGLGVYVKIGST--KHMGFVHVSRLADGQVETISSDHGPFKVGTT 509

Query: 329 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK---GKVIAVDS--FGAIVQ 383
              R++G+  ++ L +   +            DV  G VVK    KV+  +S   G IV 
Sbjct: 510 HEARVVGYSAIDNLYSLSFERKVINQPFLRLEDVTLGAVVKVTITKVLVGESGVTGLIVS 569

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLA 441
              G+    P  H ++  +  P KKF+ G  +  RVL V  + + + +T KK+L+ ++ A
Sbjct: 570 LTDGITGFIPSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKKSLLNTEAA 629

Query: 442 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 501
           +   Y +      + G I  I  +G  V+FY  V+G+   SE+      +PS  + +GQV
Sbjct: 630 VWKDYRDILPGAQSPGTIINILPNGAVVQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQV 689

Query: 502 VKCRIMSSIPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
           V    ++   +  ++++S     ++  +  +    ++ G  V+G V   + + V++ +  
Sbjct: 690 VNVHALNVDASQGKLSVSCRDQSLLADSYRTAFKTIQPGQSVTGTVFEKSDDYVLLRLED 749

Query: 558 KGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINS 614
            G     +    +AD      +   S I+ G + ++L+VLD   ++ L+  + + SL  +
Sbjct: 750 LGGLVARLGVGQVADGSASKRSSTLSKIRVGQKLNELVVLDVHRAHRLIHVTNRASLKKA 809

Query: 615 AQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS--KAVDGQRADLSK 670
            ++  +PS    +   + V G++ NI  TG FV+FLG L G  PR    + D  +++  K
Sbjct: 810 TKEGNMPSTFEDLREGAEVTGFIRNITPTGLFVQFLGGLIGLVPRRLVGSEDSNKSEFGK 869

Query: 671 TYYVGQSVRSNILDVNSETGRITLSL 696
             +  Q V + +  ++++  R  LS+
Sbjct: 870 ANF--QVVSATVHSLDTDFRRFILSM 893



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 179/403 (44%), Gaps = 49/403 (12%)

Query: 53   FHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQEG 99
            F  GQ+++  VL L D +           GK  ++ LS++   +       L+++ VQ G
Sbjct: 989  FRPGQVITAKVLGLHDARSYTYLPISHRTGKFNVYELSMKPKFVKADNATPLTIDQVQAG 1048

Query: 100  MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRSI 153
                 +V ++ +  + +    P+  G L   + +++  +  D++     G  L+  V  +
Sbjct: 1049 SSSFGFVNNVSNDFFWVSLS-PNVRGRLRFIDASDDISLLADIEKQYPIGCALKFRVTGV 1107

Query: 154  DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 213
            D  +  + LS+   + S         ++ D L  GM++ TRV  + +  V++       G
Sbjct: 1108 DAEKGHIDLSARERSES---------LTFDDLSVGMVLPTRVTRVTDKQVIMQLNNTLVG 1158

Query: 214  TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP----- 268
             VD+ ++ + F   +  + Y++++ V + I+ VD  +R + L+L P  + + + P     
Sbjct: 1159 AVDLINMADDFSKAD-PHAYHKNEVVRSCIIGVDKANRKIHLSLRPSKVLSSSLPVQDPE 1217

Query: 269  ----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 324
                  VKV DI  +  V +V  G GL + +    V   A++ ISD+++  +++ +  ++
Sbjct: 1218 ITSMEQVKVNDII-RGFVRQVSDG-GLFVTVGHNIV---AFIRISDLSDSYLKEWKDSFQ 1272

Query: 325  EGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAI 381
             G  V+ R+             LK S  +       T  D+KPG +V GKV  V+ FGA 
Sbjct: 1273 VGQLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAPITLYDLKPGQIVTGKVRKVEQFGAF 1332

Query: 382  VQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            +   G   V  LC    M++  +      ++ G  +  +VL V
Sbjct: 1333 IVIDGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKV 1375



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 165/393 (41%), Gaps = 41/393 (10%)

Query: 4    WGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSCI 62
            +G V  V+     + L   +RG  R  DA D I L  +IE          + +G  +   
Sbjct: 1052 FGFVNNVSNDFFWVSLSPNVRGRLRFIDASDDISLLADIEKQ--------YPIGCALKFR 1103

Query: 63   VLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 122
            V  +D +K  I      LS R     + L+ + +  GMVL   V  + D   I+     +
Sbjct: 1104 VTGVDAEKGHID-----LSARER--SESLTFDDLSVGMVLPTRVTRVTDKQVIMQLN-NT 1155

Query: 123  FTGFLPRNNLAENSGIDVKPGLLLQGVVRS----IDRTRKVVYLSSDPDTV--SKCVTKD 176
              G +   N+A++             VVRS    +D+  + ++LS  P  V  S    +D
Sbjct: 1156 LVGAVDLINMADDFSKADPHAYHKNEVVRSCIIGVDKANRKIHLSLRPSKVLSSSLPVQD 1215

Query: 177  LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 236
             +  S++ +    ++   V+ + + G+ ++        + I  L +++    WK+ +   
Sbjct: 1216 PEITSMEQVKVNDIIRGFVRQVSDGGLFVTVGHNIVAFIRISDLSDSY-LKEWKDSFQVG 1274

Query: 237  KKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYD-------QSKVVRVDRGL 289
            + V  R+  VDP ++ + ++L   +L     PS+     +YD         KV +V++  
Sbjct: 1275 QLVKGRVTLVDPENKKLQMSLKDSVLD----PSYKAPITLYDLKPGQIVTGKVRKVEQFG 1330

Query: 290  GLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 348
              ++   S+ VS   + T ++D   E+ R L   Y+EG  V+ ++L     +G  +  LK
Sbjct: 1331 AFIVIDGSSNVSGLCHRTEMADTRVEDARTL---YEEGDAVKAKVLKVDRDQGKISFGLK 1387

Query: 349  ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 381
            AS F       S         G  +++DSFG +
Sbjct: 1388 ASYFNDDAEDESSGNEDSDSDG--VSLDSFGGV 1418


>gi|256271623|gb|EEU06665.1| Rrp5p [Saccharomyces cerevisiae JAY291]
 gi|323347043|gb|EGA81319.1| Rrp5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1729

 Score =  422 bits (1084), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 381/1314 (28%), Positives = 629/1314 (47%), Gaps = 193/1314 (14%)

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 614
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 615  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 729  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 782
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 783  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 838  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 892
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 893  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 942
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKGVKK 907

Query: 943  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 993
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 994  --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1051
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1052 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
             VDI   NM T I   D + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NMST-IKVDDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1171 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1339
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1340 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1398
            G IK V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK+
Sbjct: 1270 GTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329

Query: 1399 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1458
            +ISL +K+S+F  +A   +++S   +    +++   +   ++ ++     D D ES+ G 
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTADQLEKEDEDEVMADA--GFNDSDSESDIGD 1384

Query: 1459 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1515
                               + D +P+   +G+S + G    A  +D+        +++  
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429

Query: 1516 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1566
              E ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489

Query: 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626
            ++EKAR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D  
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547

Query: 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1684
             +H  LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607

Query: 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
            AL +LP+  HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667

Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
               +  LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  173 bits (439), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 283/1259 (22%), Positives = 539/1259 (42%), Gaps = 178/1259 (14%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRG---------------------LARAADALD----PIL 37
            L G ++ + ++DL I    G+ G                     +    DA D     + 
Sbjct: 122  LLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAADEKKSKVE 181

Query: 38   DNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLR 83
            D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K++I L++ 
Sbjct: 182  DAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELTIE 241

Query: 84   LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 143
             S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +      +   PG
Sbjct: 242  PSSVNTYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKL--LPG 298

Query: 144  LLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
             +  G + +  DR+   + +++D    S    K  +  SID ++PG +V    +SI +NG
Sbjct: 299  AVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLLCESITKNG 352

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            +        +G V++ HL+ TF   + K+ +     +  RI+                 L
Sbjct: 353  IAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAIGSSIRCRII---------------ACL 396

Query: 263  HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------STPAYVTIS 309
             N+   S  KV  + +   +++++  L     + + P+             S   Y+ + 
Sbjct: 397  ENK---SGDKVLILSNLPHILKLEDALRSTEGLDAFPIGYTFESCSIKGRDSEYLYLALD 453

Query: 310  D-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
            D     V    V ++E      S    R+LG+  ++ +          +      +D+  
Sbjct: 454  DDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPI 509

Query: 365  G-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G+++  RV+ V
Sbjct: 510  GELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISV 569

Query: 423  KSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNG 474
             S+  + VT KK+LV    ++L ++S+Y  A +       T   +   + +GC + F+ G
Sbjct: 570  NSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGG 629

Query: 475  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 529
            + GF P SE+       P     +GQ V  +++      RRI  +  +   + ++     
Sbjct: 630  LSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKDTI 689

Query: 530  DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGY 588
            +++V   ++++  V   T ++V+V +   G  +G I   HL+D  +E        ++ G 
Sbjct: 690  ENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQLKKLRIGT 748

Query: 589  EFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETG 642
            E   L++  D  +    +S K SLI  A++  LP    D   ++ +  +H Y+ +I + G
Sbjct: 749  ELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKG 808

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
             FV F G+  G    S AVD +  D+SK +Y+ QSV   +L  + +  +  LSLK     
Sbjct: 809  LFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLKAPKVK 868

Query: 703  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSF 760
                        +E+ +          S +K  +   IGS+++ K+   + N   V+++ 
Sbjct: 869  EEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKGVKKNQLNVILAA 916

Query: 761  EEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVDLSLKTVFI 809
              H         D Y  IT  +   +  +   VI+  I+   DV K+ + + ++ K    
Sbjct: 917  NLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLPITHKISKA 975

Query: 810  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASV 868
                 +    + + K+   ++ +++ + Q +   V     N+L L++ P     I    +
Sbjct: 976  SVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLKARISLLDL 1035

Query: 869  SDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSKRAKKKSSY 927
            +D N   F +    N +SV     AL    ++  R    + AI ++    +      S+ 
Sbjct: 1036 AD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN-----MSTI 1085

Query: 928  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
             V   +   + +I    + L  G    G   IT+  +D S  ++  F + KI   +   +
Sbjct: 1086 KVDDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KINNVIPTTV 1144

Query: 988  IA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1045
            ++  + NK         ELS++ +      I S       D+  G+ V G V  V+++  
Sbjct: 1145 LSVDEQNKK-------IELSLRSATAKTRSIKS-----HEDLKQGEIVDGIVKNVNDKGI 1192

Query: 1046 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1105
             + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++ + + L LR  + 
Sbjct: 1193 FVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-ISLTLRESEI 1249

Query: 1106 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKN 1162
                K +   +D     I  GD+  G I  +     G+ V++    ++ G  H TE+ +
Sbjct: 1250 NGDLKVLKTYSD-----IKAGDVFEGTIKNVTD--FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 39/331 (11%)

Query: 92   SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 144
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISIDLLVPGMMVSTRVQSILENGV 203
             LQ  V SIDR    V      + + K  V  ++  I +D  +PG     RV  I E  V
Sbjct: 1055 ALQVKVASIDREHGFV------NAIGKSHVDINMSTIKVDDELPG-----RVLKIAEKYV 1103

Query: 204  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNP 259
            +L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L  
Sbjct: 1104 LLDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRS 1160

Query: 260  YLLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 317
                 R+  SH  +K G+I D       D+G+ + L          A+V +S +++  ++
Sbjct: 1161 ATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLK 1215

Query: 318  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIA 374
            + +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  
Sbjct: 1216 EWKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKN 1274

Query: 375  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
            V  FG  V+    V  +  L H++E    KP
Sbjct: 1275 VTDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|417406792|gb|JAA50038.1| Putative rrna processing protein rrp5 [Desmodus rotundus]
          Length = 1876

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 399/1399 (28%), Positives = 647/1399 (46%), Gaps = 164/1399 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V E NE +LVI LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 84   MRMLGCVKEANELELVISLPNGLQGFVQVTEICDAYTKKLNEQVAQEEPLKDLASLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L   +K  G++ + LSL    + K LS E ++ GM+LT  V S EDHG
Sbjct: 144  SPGMLVRCVVSSLGITEK--GRKSVKLSLNPKNVNKVLSAEALKPGMLLTGTVSSREDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     +     N G ++K G  L  V+  +     VV LS     
Sbjct: 202  YLMDIGVVGARAFLPLQKAQDYVRQKNKGAELKMGQYLTCVIEEVKGNGGVVRLSVSHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL++FTG VD  HL      T 
Sbjct: 262  VSTAIATEEQNWTLNNLLPGLVVKAQVQKVTPLGLTLNFLSFFTGLVDFMHLDPKKAGT- 320

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRV 285
                Y+ ++ V A +L V P +RAV L+L P  L    P + +    +G + D   V   
Sbjct: 321  ----YSSNQAVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLSCQHLGAVLDDIPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FSKAGATFRLKDGSL---AYARLSHLSDSKSAFSPEAFKPGNTHKCRIINYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E    +  D+KPG +VKG V+ +  +G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSVIEAQYLSFHDIKPGALVKGTVLTIKPYGMLVKVGEQIRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ VG E+  RVL    ++K++ +T KKTLV+SKL  ++ YA+A   L THG+I +++
Sbjct: 494  EKKYHVGDEVTCRVLLCDPEAKKLMMTLKKTLVESKLPAITCYAKAKPGLQTHGFILRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLL 613

Query: 523  -KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
              P +        +   + +G LV   V   T + + V V+        +P  HL+DH+ 
Sbjct: 614  SDPKKEHAGRSQKKGKTINVGQLVDVKVLEKTKDGLEVAVLPHNIP-AFLPMSHLSDHVP 672

Query: 576  HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHG 633
            +  ++   ++ G    ++L L     ++LLS K +L+++ +  Q P   S IHP  ++ G
Sbjct: 673  NGPLLYHWLQAGDTLHRVLCLSQSEGHVLLSRKPALVSTVEGGQDPKSFSEIHPGMLLIG 732

Query: 634  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            +V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R+ 
Sbjct: 733  FVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRML 792

Query: 694  LSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVH 749
            LSL+ S CS  D    S +     LEE+  +     +  S L + +   I G V++ +V 
Sbjct: 793  LSLRLSDCSLGDRATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMIPGMVLDLEVQ 852

Query: 750  ESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAIL--DVAKAERLVDLSL 804
            E    G VV F E   V G +   + +  AG  V +G   +A IL  DV K E  V L  
Sbjct: 853  EVLGDGSVV-FSE-GPVPGLVLRASRYHRAGQEVGAGQKKKAVILHVDVVKLEVHVSLCR 910

Query: 805  KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIG 864
              V          NR+A+K K+  E       HQ   A+V+ ++E++ V SL E  H   
Sbjct: 911  DLV----------NRKAKKLKKGSE-------HQ---AVVQYLEESFAVASLVETGHLAA 950

Query: 865  YASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKR--- 920
            ++  +  N T +F  ++   GQ V  T+       T    LL ++  +   T    R   
Sbjct: 951  FSLAAHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--FLLAVEGPAAKRTMRQTRKDS 1008

Query: 921  ----------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
                             KKK +  +G +V   +  IKP  + +    G  G IH + + D
Sbjct: 1009 ETVDEDDEGDPAMVVGTKKKHALSIGDMVTGTVKSIKPTHVVVTLQNGIIGCIHASHILD 1068

Query: 965  DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSMLT 1012
            +   +  +  +  K+G+TVTAR+I      DMK   FL            ELS++PS L 
Sbjct: 1069 E-VPLGTSPTAKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSEL- 1123

Query: 1013 VSEIGSKLLFEEC--------DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDS 1062
             ++ G   L                GQ VT ++  Y V  +W  + I+  ++ ++ +L +
Sbjct: 1124 -AKDGRTALNTHSVSPSEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLT 1182

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            +     L+   + F IG+A+   V+  +  K  L L L             I    ++  
Sbjct: 1183 SLSFKVLKHPDKNFRIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE-- 1227

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
              EG++  GR+ K+     GL V      +GR+    L    VSD    Y E    PL  
Sbjct: 1228 --EGEVAMGRVVKVTPN-EGLTVSFP---FGRIGSVSL--FHVSD---SYSE---TPLED 1273

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            +   + V+C VL  +  V     + LSLRS     S TN    S  +D     +  I D+
Sbjct: 1274 FTPQKIVRCYVLSSTDEV-----LTLSLRS-----SRTNPETKSKIIDP---EINSIRDI 1320

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRK---LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
                +++GYVK+V   G    L      L     +S+ S        +  P GKL+  +V
Sbjct: 1321 QEGQLLRGYVKSVQPHGVLFGLGPSVVGLARHPRVSHCSPSKKALYNRHLPGGKLLTAKV 1380

Query: 1300 LSVEPLSKRVEVTLKTSDS 1318
            LSV      VE++    D+
Sbjct: 1381 LSVNHQKNLVELSFLPGDT 1399



 Score =  292 bits (747), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 223/333 (66%), Gaps = 17/333 (5%)

Query: 1475 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD- 1533
            +V LD   P +       QG + +++  DEK  +  KKK K+ERE E + AE+ L   + 
Sbjct: 1545 DVGLDSLTPALPP-----QGDSSDSEE-DEKPQQATKKKSKKERELEKQKAEKELSRIEE 1598

Query: 1534 -------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1586
                    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ RE
Sbjct: 1599 ALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFRE 1658

Query: 1587 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1646
            E EKLN+WVA  NLEN YG+  +E+++KVF+RA+QY +P KV L L  +Y ++E+ + A 
Sbjct: 1659 EQEKLNVWVALLNLENMYGS--QESLMKVFERAVQYNEPLKVFLQLADIYTKSEKFQEAG 1716

Query: 1647 ELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILE 1705
            EL  +M+K+F+    VW++    LL++ Q G     +QRAL  LP+ +H+  IS+ A LE
Sbjct: 1717 ELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRAMQRALECLPKKEHVDVISKFAQLE 1776

Query: 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765
            F+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+M
Sbjct: 1777 FQLGDAERAKALFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRM 1836

Query: 1766 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            KF FK+YL+YEK  G E+ ++ VK KA++YVE+
Sbjct: 1837 KFFFKRYLDYEKHHGTEKDVQAVKAKALDYVEA 1869



 Score = 70.5 bits (171), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 142/329 (43%), Gaps = 45/329 (13%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1139
            +AV   VL ++   + +RL LRP           +S  ++   + +  + G       S 
Sbjct: 325  QAVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLSCQHLGAVLDDIPVQG-----FFSK 379

Query: 1140 VGGLV-VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
             G    ++ G   Y R+         +SD  S +    F P      G   KC+++  S+
Sbjct: 380  AGATFRLKDGSLAYARLSH-------LSDSKSAFSPEAFKP------GNTHKCRIINYSQ 426

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                     LSLR+S+       +  LS              D+ P  +V+G V  +   
Sbjct: 427  MDELAL---LSLRTSV-----IEAQYLS------------FHDIKPGALVKGTVLTIKPY 466

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS-- 1316
            G  + +  ++   V   +L+D  +++PEK++ +G  V  RVL  +P +K++ +TLK +  
Sbjct: 467  GMLVKVGEQIRGLVPPMHLADILMKNPEKKYHVGDEVTCRVLLCDPEAKKLMMTLKKTLV 526

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
            +S+  +   I   +    G    G I RV+ YG  +   N ++ GL    ELS ++V + 
Sbjct: 527  ESKLPA---ITCYAKAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSAEYVPDP 582

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 583  ERVFYTGQVVKVAVLNCEPSKERMLLSFK 611



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 45/251 (17%)

Query: 871  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 930
            +   K P K F  GQ++ ATV+  P SS A   L L+                    + G
Sbjct: 1186 FKVLKHPDKNFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEEG 1229

Query: 931  SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
             +    + ++ P E L + F  G  G + +  V+D  S   E    +F   + V   +++
Sbjct: 1230 EVAMGRVVKVTPNEGLTVSFPFGRIGSVSLFHVSDSYS---ETPLEDFTPQKIVRCYVLS 1286

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1045
             +++       +  LS++ S  T  E  SK++  E     D+  GQ + GYV  V     
Sbjct: 1287 STDE-------VLTLSLRSSR-TNPETKSKIIDPEINSIRDIQEGQLLRGYVKSVQPHGV 1338

Query: 1046 L-------LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1098
            L       + ++RH +       S   PS+   + R    GK +T  VLS+N +K L+ L
Sbjct: 1339 LFGLGPSVVGLARHPRV------SHCSPSKKALYNRHLPGGKLLTAKVLSVNHQKNLVEL 1392

Query: 1099 VLRPFQDGISD 1109
               P   G  D
Sbjct: 1393 SFLPGDTGKPD 1403



 Score = 44.3 bits (103), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             + S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 719  KSFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 777

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 778  VAKVTNVDEEKQRMLLSLRLS 798


>gi|414883928|tpg|DAA59942.1| TPA: hypothetical protein ZEAMMB73_646840 [Zea mays]
          Length = 376

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/331 (63%), Positives = 266/331 (80%), Gaps = 14/331 (4%)

Query: 1474 LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1533
            LE N+ +   ++ NG   N   +D          +  KK+ +++RE EI A EER L++D
Sbjct: 50   LEDNISNTCLEIANGTEANAKKSD----------KQLKKEARKQRELEISAMEERALQED 99

Query: 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1593
             P+TPD+FE+LVRSSPNSSF+WIKYMA +L +ADV+KAR++AERAL+TI  REE EKLN+
Sbjct: 100  IPQTPDDFEKLVRSSPNSSFIWIKYMATLLDLADVKKARAVAERALKTIIPREEEEKLNV 159

Query: 1594 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1653
            WVAYFNLENEYG+P E+AV KVFQRALQYCDPKK+HLALL +YERTEQ +LADELL ++ 
Sbjct: 160  WVAYFNLENEYGSPREDAVKKVFQRALQYCDPKKLHLALLAMYERTEQYELADELLDRIT 219

Query: 1654 KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1711
            K+FK SCK+WL R+Q  LKQ +  E ++A+V RALLSLP  K IKF+SQTAILEFK GV 
Sbjct: 220  KRFKTSCKIWLCRIQFALKQGKDVEYIKAIVNRALLSLPHRKRIKFLSQTAILEFKCGVP 279

Query: 1712 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS-LSLPPKKMKFLFK 1770
            + GRS FE IL EYPKRTDLWS+YLDQEIRLGDV++IR LFER ++ L+LPPKKM+FLFK
Sbjct: 280  EEGRSRFELILREYPKRTDLWSVYLDQEIRLGDVEVIRALFERRVACLTLPPKKMQFLFK 339

Query: 1771 KYLEYEKSVGEE-ERIEYVKQKAMEYVESTL 1800
            KYL +EKS+G++ ERI+ V+QKA+EYV+S+L
Sbjct: 340  KYLNFEKSLGKDNERIQLVQQKAIEYVQSSL 370


>gi|190408455|gb|EDV11720.1| rRNA biogenesis protein RRP5 [Saccharomyces cerevisiae RM11-1a]
          Length = 1729

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 378/1314 (28%), Positives = 627/1314 (47%), Gaps = 193/1314 (14%)

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 614
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 615  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 729  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 782
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 783  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 838  QTVNAIVE-----IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 892
              + +I +          ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFIAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 893  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 942
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 943  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 993
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 994  --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1051
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1052 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
             VDI   N+ T I   D + GR+ KI      +++ +G  + G + F       ++D L+
Sbjct: 1077 HVDI---NVST-IKVDDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122

Query: 1171 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226
             +     E   D ++       +   VL +    +    +ELSLRS+     S  S    
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH--- 1171

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
                         EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1339
            K +   + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269

Query: 1340 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1398
            G IK V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK+
Sbjct: 1270 GTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329

Query: 1399 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1458
            +ISL +K+S+F  +A   +++S   +    +++   +   ++ ++     D D ES+ G 
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTADQLEKEDEDEVMADA--GFNDSDSESDIGD 1384

Query: 1459 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1515
                               + D +P+   +G+S + G    A  +D+        +++  
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429

Query: 1516 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1566
              E ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489

Query: 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626
            ++EKAR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D  
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547

Query: 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1684
             +H  LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607

Query: 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
            AL +LP+  HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667

Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
               +  LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 282/1259 (22%), Positives = 539/1259 (42%), Gaps = 178/1259 (14%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRG---------------------LARAADALD----PIL 37
            L G ++ + ++DL I    G+ G                     +    DA D     + 
Sbjct: 122  LLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAADEKKSKVE 181

Query: 38   DNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLR 83
            D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K++I L++ 
Sbjct: 182  DAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELTIE 241

Query: 84   LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 143
             S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +      +   PG
Sbjct: 242  PSSVNTYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKL--LPG 298

Query: 144  LLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
             +  G + +  DR+   + +++D    S    K  +  SID ++PG +V    +SI +NG
Sbjct: 299  AVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLLCESITKNG 352

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            +        +G V++ HL+ TF   + K+ +     +  RI+                 L
Sbjct: 353  IAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAIGSSIRCRII---------------ACL 396

Query: 263  HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------STPAYVTIS 309
             N+   S  KV  + +   +++++  L     + + P+             S   Y+ + 
Sbjct: 397  ENK---SGDKVLILSNLPHILKLEDALRSTEGLDAFPIGYTFESCSIKGRDSEYLYLALD 453

Query: 310  D-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
            D     V    V ++E      S    R+LG+  ++ +          +      +D+  
Sbjct: 454  DDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPI 509

Query: 365  G-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G+++  RV+ V
Sbjct: 510  GELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISV 569

Query: 423  KSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNG 474
             S+  + VT KK+LV    ++L ++S+Y  A +       T   +   + +GC + F+ G
Sbjct: 570  NSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGG 629

Query: 475  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 529
            + GF P SE+       P     +GQ V  +++      RRI  +  +   + ++     
Sbjct: 630  LSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKDTI 689

Query: 530  DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGY 588
            +++V   ++++  V   T ++V+V +   G  +G I   HL+D  +E        ++ G 
Sbjct: 690  ENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQLKKLRIGT 748

Query: 589  EFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETG 642
            E   L++  D  +    +S K SLI  A++  LP    D   ++ +  +H Y+ +I + G
Sbjct: 749  ELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKG 808

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
             F+ F G+  G    S AVD +  D+SK +Y+ QSV   +L  + +  +  LSLK     
Sbjct: 809  LFIAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLKAPKVK 868

Query: 703  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSF 760
                        +E+ +          S +K  +   IGS+++ K+   + N   V+++ 
Sbjct: 869  EEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKSVKKNQLNVILAA 916

Query: 761  EEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVDLSLKTVFI 809
              H         D Y  IT  +   +  +   VI+  I+   DV K+ + + ++ K    
Sbjct: 917  NLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLPITHKISKA 975

Query: 810  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASV 868
                 +    + + K+   ++ +++ + Q +   V     N+L L++ P     I    +
Sbjct: 976  SVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLKARISLLDL 1035

Query: 869  SDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSKRAKKKSSY 927
            +D N   F +    N +SV     AL    ++  R    + AI ++    +      S+ 
Sbjct: 1036 AD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN-----VSTI 1085

Query: 928  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
             V   +   + +I    + L  G    G   IT+  +D S  ++  F + KI   +   +
Sbjct: 1086 KVDDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KINNVIPTTV 1144

Query: 988  IA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1045
            ++  + NK         ELS++ +      I S       D+  G+ V G V  V+++  
Sbjct: 1145 LSVDEQNKK-------IELSLRSATAKTRSIKS-----HEDLKQGEIVDGIVKNVNDKGI 1192

Query: 1046 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1105
             + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++ + + L LR  + 
Sbjct: 1193 FVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-ISLTLRESEI 1249

Query: 1106 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKN 1162
                K +   +D     I  GD+  G I  +     G+ V++    ++ G  H TE+ +
Sbjct: 1250 NGDLKVLKTYSD-----IKAGDVFEGTIKNVTD--FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 39/331 (11%)

Query: 92   SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 144
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISIDLLVPGMMVSTRVQSILENGV 203
             LQ  V SIDR    V      + + K  V  ++  I +D  +PG     RV  I E  V
Sbjct: 1055 ALQVKVASIDREHGFV------NAIGKSHVDINVSTIKVDDELPG-----RVLKIAEKYV 1103

Query: 204  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNP 259
            +L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L  
Sbjct: 1104 LLDLGNKVTGISFITDALNDFSLT-LKEAF--EDKINNVIPTTVLSVDEQNKKIELSLRS 1160

Query: 260  YLLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 317
                 R+  SH  +K G+I D       D+G+ + L          A+V +S +++  ++
Sbjct: 1161 ATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLK 1215

Query: 318  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIA 374
            + +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  
Sbjct: 1216 EWKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKN 1274

Query: 375  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
            V  FG  V+    V  +  L H++E    KP
Sbjct: 1275 VTDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|426253041|ref|XP_004020210.1| PREDICTED: protein RRP5 homolog [Ovis aries]
          Length = 1873

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 398/1404 (28%), Positives = 657/1404 (46%), Gaps = 162/1404 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D   +  NE  A E+ L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYTEKLNEQVAQEEPLQDLVGLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  LD  K   GK+ + LSL    + + LS ET++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLDTTK--WGKKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +  +  VV LS     
Sbjct: 202  YLVDIGVSGARAFLPLQKAQEYIRQKNKGARLKVGQYLNCLIEEVKGSGGVVTLSIGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L FL++F+G VD  HL      T 
Sbjct: 262  VSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDPKRAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     ++V A +L V P +RAV L+L P  L    P + +   ++G + D   V   
Sbjct: 322  FSN-----QQVRACVLCVHPRTRAVRLSLRPIFLQPGRPLTRLLCQQLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    +    +   AY   + ++  +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FGNAGATFKLKDGAL---AYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D+KPG +VKGKV+ +   G +V+    ++ L P  H+++  I  P
Sbjct: 434  SLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ VG E+  RVL    K+K++ +T KKTLV+SKL  ++ Y +A   L THG+I +++
Sbjct: 494  EKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
            ++GC V+FYN VQG  PR EL  +   +P S+++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  EYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVAVLNCEPSKERMLLSFRLL 613

Query: 523  -KPTRVSEDDLVKLGSLVSG--VVDV----VTPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
              P +  E    K    VS   +VDV     T + + V V+      G +PT HL+DH+ 
Sbjct: 614  SDPKQECEGQSQKKKKAVSAGQLVDVKILEKTKDGLKVAVLPHNIP-GFLPTAHLSDHVT 672

Query: 576  HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHG 633
            +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P   S IHP  ++ G
Sbjct: 673  NGPLLYHWLQTGDTLHRVLCLSASEERVLLCRKPALVSAVEGGQNPKSFSEIHPGMLLIG 732

Query: 634  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            +V NI + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R+ 
Sbjct: 733  FVKNIKDYGVFIQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDKEKQRML 792

Query: 694  LSLKQSCCSSTDASFMQEHF---LLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVIEGKVH 749
            LSL+ S C+  D +          LEE+  +    S  +   ++ +     G  ++ +V 
Sbjct: 793  LSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNQDSVLIQTLAEMTPGMALDLEVQ 852

Query: 750  ESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            E  + G V+ F E   V G +   + +  AG  +E G   +A IL+V   +  V +SL  
Sbjct: 853  EVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKLEVHVSLCH 910

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              +        NR+A+K K+  +          + AIV+ ++E++ V SL E  H   ++
Sbjct: 911  DLV--------NRKAKKLKKGSD----------LQAIVQHLEESFAVASLVETGHLAAFS 952

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK--- 922
              S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R     
Sbjct: 953  LTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVTG--LLLAVEGPAAKRTMRQARKDSET 1010

Query: 923  ----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
                            KK +  +G +V   +  IKP  + +    G  G IH + + DD 
Sbjct: 1011 VDEDEEVDPALVIGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDD- 1069

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML--- 1011
              V  +  +  K+G+ VTAR+I      DMK   FL            ELS++PS L   
Sbjct: 1070 VPVGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSELKED 1126

Query: 1012 --TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEP 1066
              T     S    E+      GQ VT ++  Y +  +W  + I+  ++ ++ +L ++   
Sbjct: 1127 GHTALNTHSVSPLEKIKQYQAGQTVTCFLKKYNMVKKWLEVEIAPDVRGRIPLLLTSLSF 1186

Query: 1067 SELQEFQRRFHIGKAVTGHVLS-INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1125
              L+   ++F IG+A+   V+   +  K  L L L             I    ++    +
Sbjct: 1187 KVLKHPDKKFQIGQALKATVVGPADSSKAFLSLSL-------------IGPHKLK----K 1229

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            G++  GR+ K+ +   GL V      +GRV    +    VSD    Y E +   L  +  
Sbjct: 1230 GEVAMGRVVKV-TPKEGLTVSFP---FGRVGRVSM--FHVSD---SYSETR---LEDFAP 1277

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
             Q V+C VL  +  V     + LSLRS     S TN    S   D     +  I+DL   
Sbjct: 1278 QQIVRCYVLSAASPV-----LTLSLRS-----SRTNPETKSKITDP---EINSIKDLEEG 1324

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVAGRVLSV 1302
             +++G+VK+V   G  + L   +       ++S  +    +P ++  P GKL+  +VL +
Sbjct: 1325 QLLRGFVKSVQPSGVLVGLGPSVTGLAQHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLRL 1384

Query: 1303 EPLSKRVEVTL-----KTSDSRTA 1321
                  VE++L        D+R+A
Sbjct: 1385 NHQESLVELSLLPDATGKQDARSA 1408



 Score =  263 bits (671), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/305 (49%), Positives = 213/305 (69%), Gaps = 11/305 (3%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERL--LEK---DAPRTPD---EFERLVRSSPNSSFV 1554
            DEK  +  KKK K+ERE E + AE+ L  LE+   D  R P+   +F+RLV SSP+SS +
Sbjct: 1565 DEKPEQATKKKSKKERELEKQKAEKELSRLEEALMDPGRQPESAEDFDRLVLSSPSSSLL 1624

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1625 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1682

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1673
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1683 VFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRG 1742

Query: 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
            + E    V+QRAL  LP+ +H+  I++ A LEF+ G A+R R++FE  LS YPKRTD+WS
Sbjct: 1743 KAEACHHVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTDVWS 1802

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +Y+D  I+ G     R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1803 VYIDMIIKHGSQKEARDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKAL 1862

Query: 1794 EYVES 1798
            EYVE+
Sbjct: 1863 EYVEA 1867



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1357
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N 
Sbjct: 509  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKEYGCIVKFYN- 563

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            ++ GL    ELS ++V + E+++  G+ VKV +L  +  K R+ L  +
Sbjct: 564  DVQGLVPRHELSAEYVPDPESVFYTGQVVKVAVLNCEPSKERMLLSFR 611



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 179/460 (38%), Gaps = 71/460 (15%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
            G +V+A++ ++ PL L LKF   F G +    ++  ++      FSN    Q V A ++ 
Sbjct: 281  GLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDPKRAG---TYFSN----QQVRACVLC 333

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC-----DVSIGQRV--TGYVYKVDN 1042
                    ++    LS++P  L      ++LL ++      DV +       G  +K+ +
Sbjct: 334  VH-----PRTRAVRLSLRPIFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGNAGATFKLKD 388

Query: 1043 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1102
                     HL          ++P         F  G      ++  ++  +L  L LR 
Sbjct: 389  GALAYARRNHLSNS----KKTFKPEA-------FKPGNTHKCRIIDYSQMDELALLSLR- 436

Query: 1103 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1162
                I +      +D     I  G +V G++  I     G+VV++G  + G V    L +
Sbjct: 437  --TSIIEAQFLWYHD-----IKPGALVKGKVLTIKPH--GMVVKMGKQIRGLVPTMHLAD 487

Query: 1163 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1222
            I + +P   Y  G        DE   VKC+VL      +      ++L+ +L        
Sbjct: 488  ILIKNPEKKYHVG--------DE---VKCRVLLCDPKAKKLM---MTLKKTL-------- 525

Query: 1223 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1282
                  V++    +   +D  P +   G++  V   GC +     +   V    LS  YV
Sbjct: 526  ------VESKLPAITCYDDAKPGLQTHGFILRVKEYGCIVKFYNDVQGLVPRHELSAEYV 579

Query: 1283 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-TSDSRTASQSEINNLSN-LHVGDIVIG 1340
              PE  F  G++V   VL+ EP  +R+ ++ +  SD +   + +       +  G +V  
Sbjct: 580  PDPESVFYTGQVVKVAVLNCEPSKERMLLSFRLLSDPKQECEGQSQKKKKAVSAGQLVDV 639

Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
            +I      GL + +   N+ G    + LS DHV N   +Y
Sbjct: 640  KILEKTKDGLKVAVLPHNIPGFLPTAHLS-DHVTNGPLLY 678



 Score = 47.4 bits (111), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 169/447 (37%), Gaps = 75/447 (16%)

Query: 977  FKIGQTVTARIIAKSNKPDM----------KKSFLWELSIKPSMLTVSEIGSKLLFEECD 1026
            FK G T   RII  S   ++          +  FLW   IKP  L   ++          
Sbjct: 411  FKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKV---------- 460

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
              +  +  G V K+  +   L  + HL A + I +           ++++H+G  V   V
Sbjct: 461  --LTIKPHGMVVKMGKQIRGLVPTMHL-ADILIKNP----------EKKYHVGDEVKCRV 507

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1146
            L  + + K L + L+          +   +D        G I+  R+ +      G +V+
Sbjct: 508  LLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFIL--RVKEY-----GCIVK 560

Query: 1147 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1206
                + G V   EL    V DP S +          Y  GQ VK  VL    +       
Sbjct: 561  FYNDVQGLVPRHELSAEYVPDPESVF----------YT-GQVVKVAVLNCEPSKERML-- 607

Query: 1207 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLS 1265
             LS R   D                 G+  +K + +S   +V   +   T  G  + +L 
Sbjct: 608  -LSFRLLSDPKQECE-----------GQSQKKKKAVSAGQLVDVKILEKTKDGLKVAVLP 655

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKRVEVTLKTS-DSRT 1320
              +   +  ++LSD     P        L  G    RVL +    +RV +  K +  S  
Sbjct: 656  HNIPGFLPTAHLSDHVTNGP---LLYHWLQTGDTLHRVLCLSASEERVLLCRKPALVSAV 712

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
                   + S +H G ++IG +K ++ YG+FI    + L GL   + LS+  V +    +
Sbjct: 713  EGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFIQFP-SGLSGLAPKAILSDKFVTSTSDHF 771

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSS 1407
              G+ V  K+  VDKEK+R+ L ++ S
Sbjct: 772  VEGQTVVAKVTNVDKEKQRMLLSLRLS 798


>gi|115388025|ref|XP_001211518.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195602|gb|EAU37302.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1798

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 380/1388 (27%), Positives = 662/1388 (47%), Gaps = 172/1388 (12%)

Query: 496  YHVGQVVKCRIMSSIPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV 551
            +  G V + R++          LSF    + +P    ED  V +G++V G ++ +   A 
Sbjct: 494  FQTGSVHEARVIGYNALDNLYLLSFERQVIDQPFLRLED--VTVGAVVKGKIEKLLIGAG 551

Query: 552  ----VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLS 606
                ++  +A G + G +P+ H AD        K   + G     ++L ++ E   + L+
Sbjct: 552  GVDGLIVSLADGIT-GLVPSMHFADAPLQFPEKK--FREGMTVSARILSVNLEKRQIRLT 608

Query: 607  AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 666
             K SL+NS   +  D   I P +   G + NI   G  V+F G + GF P S+  +    
Sbjct: 609  LKKSLLNSESAIWKDYESIVPGAQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAYIK 668

Query: 667  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 726
            D S+ + +GQ V  + L V + +GR+ +S K       D S   E +             
Sbjct: 669  DPSQHFRLGQVVSVHALSVEAASGRLAVSCK-------DPSTFTESYR------------ 709

Query: 727  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 786
                  K  E    G ++ G V E +   V++  +E   V      H   G+  +  S +
Sbjct: 710  ------KAFENIRPGLLVTGTVFEKSSDDVLLKLDEFGLVARLTLEHVSDGSLSKQNSTL 763

Query: 787  QAA----------ILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 836
                         +LD+ +  RL+ +S +           S ++A K+    E  +D+  
Sbjct: 764  SKIRVGQKLNDLLVLDIQRGRRLIKVSGRA----------SLKKAVKQGLIPENFEDVQE 813

Query: 837  HQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL- 894
               V   +  I  +   V  L      +    V D N  K P       Q V ATV ++ 
Sbjct: 814  GSDVTGFIRNITLDGVFVEFLGGLIGLVPKRLVGDENITK-PSFGMTKSQIVTATVHSID 872

Query: 895  -----------PSSST-AGRLLLLLKAISETETSSSKRAKK-------KSSYDVGSLVQA 935
                       P+ +T AG    + K   +   S    A          S +  G +V+ 
Sbjct: 873  VDFRRFILSMNPAEATRAGAKKPVAKTTPKATPSDDAVANAVDDGVSTMSDFSFGRVVKC 932

Query: 936  EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIAKSNK 993
            ++  +K  ++ ++      GRI ++EV D   ++ +       F+  Q ++ARI+   + 
Sbjct: 933  KVVSVKATQVNVQLADNIQGRIDVSEVFDKLDDIKDRKQPLRFFRTKQVISARILGIHDA 992

Query: 994  PDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEW 1044
             + K         K  ++ELS+KPS L  S   + L  E+  V +G    G++  V ++ 
Sbjct: 993  RNHKFLPISHRTGKYPVFELSVKPSYLKASNP-TPLNLEQ--VQVGSSWLGFINNVADDC 1049

Query: 1045 ALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1104
              + +S +++ +L  +D++ + S L + ++ F +G AV  HV +++ +K  L L  +   
Sbjct: 1050 LWVNLSPNVRGRLRFMDASDDLSLLADVEKNFPVGSAVKVHVTAVDSQKGRLDLSAKRRS 1109

Query: 1105 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1164
            D +S   + +           G I+ GR++K+      +++Q+   + G V   ++ +  
Sbjct: 1110 DKLSFSDISV-----------GMILPGRVTKVTERQ--VIMQLTDTIVGAVDLIDMAD-- 1154

Query: 1165 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1224
                    D  + +P + Y + + ++  V+ + +  +    + LSLR S           
Sbjct: 1155 --------DYTKANP-TIYQKNEVLRACVVAVDKANK---KISLSLRPS---------KV 1193

Query: 1225 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1284
            LS+ +    + +  ++DL  N +V+G+V+ V   G F+ +   +   V +S+LSD Y++ 
Sbjct: 1194 LSSSLPVQDREITSMKDLKVNDVVRGFVRRVADSGLFVTVGHGVTVYVRVSDLSDSYLKE 1253

Query: 1285 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1344
             +  F   +LV GR+  V+P   +++++LK S      ++ +  LS+L  G IV G++++
Sbjct: 1254 WKDSFQADQLVKGRITVVDPEHNKLQMSLKDSVLDPDYKAPLT-LSDLKPGQIVTGKVRK 1312

Query: 1345 VESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403
            VE +G FI I+ + N+ GLCH SE++E  VD+  T++  G+ VK KI+K+D+E+ ++S G
Sbjct: 1313 VEEFGAFIVIDRSANISGLCHRSEMAEKRVDDARTLFEEGDAVKAKIIKIDREQGKVSFG 1372

Query: 1404 MKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLA 1463
            +K+SYF N  ++ + S +E+  E +    S +    +E      +D D +   GG  +  
Sbjct: 1373 LKASYFDNGEEDGESSGDEDESEGV----SLDGFGGMEVDGSDEEDDDSDMSMGGIDIEG 1428

Query: 1464 QIESRASVPPLEVNLDDEQPDMDNG--------ISQN-QGHTDEAKTIDEKNNRHAKKKE 1514
               S +     +     + P    G         S N Q   DEA   D  ++  ++KK 
Sbjct: 1429 DSGSDSGSDESDEEEGAKAPSKQKGGLGSGGFDWSGNVQDDEDEAMGSDSDDDEESRKKR 1488

Query: 1515 KEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1574
            K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEK R I
Sbjct: 1489 KKHRKPEIQVDRTGELDANGPQSVADYERLLLGEPDSSQLWLQYMAFQLELGEVEKTREI 1548

Query: 1575 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1634
            AERAL+TI I ++ EKLNIWVA  NLEN YGN  ++ +  VF+RA QY D ++V+  ++ 
Sbjct: 1549 AERALRTITIGQDAEKLNIWVALLNLENTYGN--DDTLEDVFKRACQYNDTQEVYERMIS 1606

Query: 1635 LYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPR 1691
            +Y ++ +N+ ADEL    + KK  HS K +L     L       E  +A++ RAL SLP 
Sbjct: 1607 IYIQSGKNEKADELFQTALKKKIFHSSKFYLNYASFLFDTMADPERGRALLPRALQSLPS 1666

Query: 1692 HKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1749
            H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R
Sbjct: 1667 HTHVETTSKFGQLEFRSANGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKAGDAEQVR 1726

Query: 1750 GLFERAISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQ 1790
             LFER + +               L PK+ +F FKK+L +E+ +     G E+ +E +K 
Sbjct: 1727 RLFERVLGIRDTKKGAVSVEESKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKA 1786

Query: 1791 KAMEYVES 1798
            KA +YV+S
Sbjct: 1787 KAADYVKS 1794



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 180/696 (25%), Positives = 308/696 (44%), Gaps = 51/696 (7%)

Query: 53  FHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
           F++GQ +   V+ +  D  +     +++I LS+       GL+   +   + + A V S+
Sbjct: 206 FYLGQYLRAYVVSVGSDSADARSKHRKRIELSVDPRQANSGLTKSDIVTNIAVQASVLSV 265

Query: 110 EDHGYILHFGL--PSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSS 164
           EDHG ++  G+      GF+    +  +  ID   +K G +   +V   +    V+ LS+
Sbjct: 266 EDHGLVMDLGIEGSDVKGFMSSKEI--DPKIDYSNIKEGSVFLCMVTGQNANGSVIKLSA 323

Query: 165 DPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           + ++ S  + K        +I+  VPG      +  +  NG+    +     TVD+    
Sbjct: 324 NLNS-SGSIKKSHYLSSAPTINSFVPGTAAEILLTEVSSNGIAGKIMGMLDATVDLVQSG 382

Query: 222 NTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH----NRAPPSH---VK 272
                 + +  +    KV  R++   P S    VG +L  ++         P S      
Sbjct: 383 GNSGKDDLEKKFKIGAKVKGRLVCTFPASEPYKVGFSLLDHVCKFTSDGNGPGSSDDAPA 442

Query: 273 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCV 329
           V  I  ++KVV+VD GLG+ + I ST      +V +S +A+ +V  + +    ++ GS  
Sbjct: 443 VSAIVQEAKVVKVDPGLGVYVQIGST--KHIGFVHVSRLADGQVETITEDHGPFQTGSVH 500

Query: 330 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI-------AVDSFGAIV 382
             R++G+  L+ L     +    +       DV  G VVKGK+         VD  G IV
Sbjct: 501 EARVIGYNALDNLYLLSFERQVIDQPFLRLEDVTVGAVVKGKIEKLLIGAGGVD--GLIV 558

Query: 383 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 440
               G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L+ S+ 
Sbjct: 559 SLADGITGLVPSMHFADAPLQFPEKKFREGMTVSARILSVNLEKRQIRLTLKKSLLNSES 618

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI   Y        + G I  I+ HG  V+FY  V+GF P SE+      +PS  + +GQ
Sbjct: 619 AIWKDYESIVPGAQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQ 678

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYV 555
           VV    +S   AS R+ +S    P+  +E      + ++ G LV+G V   + + V++ +
Sbjct: 679 VVSVHALSVEAASGRLAVS-CKDPSTFTESYRKAFENIRPGLLVTGTVFEKSSDDVLLKL 737

Query: 556 IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLI 612
              G     +  EH++D  L       S I+ G + + LLVLD +    L+  S + SL 
Sbjct: 738 DEFGLV-ARLTLEHVSDGSLSKQNSTLSKIRVGQKLNDLLVLDIQRGRRLIKVSGRASLK 796

Query: 613 NSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 670
            + +Q  +P +   +   S V G++ NI   G FV FLG L G  P+    D      S 
Sbjct: 797 KAVKQGLIPENFEDVQEGSDVTGFIRNITLDGVFVEFLGGLIGLVPKRLVGDENITKPSF 856

Query: 671 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
                Q V + +  ++ +  R  LS+  +  +   A
Sbjct: 857 GMTKSQIVTATVHSIDVDFRRFILSMNPAEATRAGA 892



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 164/382 (42%), Gaps = 51/382 (13%)

Query: 52   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 98
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 975  FFRTKQVISARILGIHDARNHKFLPISHRTGKYPVFELSVKPSYLKASNPTPLNLEQVQV 1034

Query: 99   GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKPGLLLQGVVR----S 152
            G     ++ ++ D    ++   P+  G L   + +++  +  DV+    +   V+    +
Sbjct: 1035 GSSWLGFINNVADDCLWVNLS-PNVRGRLRFMDASDDLSLLADVEKNFPVGSAVKVHVTA 1093

Query: 153  IDRTRKVVYLSSD--PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 210
            +D  +  + LS+    D +S         IS+ +++PG     RV  + E  V++     
Sbjct: 1094 VDSQKGRLDLSAKRRSDKLS------FSDISVGMILPG-----RVTKVTERQVIMQLTDT 1142

Query: 211  FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY-LLHNRAPPS 269
              G VD+  + + +   N    Y +++ + A ++ VD  ++ + L+L P  +L +  P  
Sbjct: 1143 IVGAVDLIDMADDYTKAN-PTIYQKNEVLRACVVAVDKANKKISLSLRPSKVLSSSLPVQ 1201

Query: 270  HVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 322
              ++  + D  KV  V RG        GL + +         YV +SD+++  +++ +  
Sbjct: 1202 DREITSMKDL-KVNDVVRGFVRRVADSGLFVTVGH---GVTVYVRVSDLSDSYLKEWKDS 1257

Query: 323  YKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFG 379
            ++    V+ RI             LK S  +       T SD+KPG +V GKV  V+ FG
Sbjct: 1258 FQADQLVKGRITVVDPEHNKLQMSLKDSVLDPDYKAPLTLSDLKPGQIVTGKVRKVEEFG 1317

Query: 380  A--IVQFPGGVKALCPLPHMSE 399
            A  ++     +  LC    M+E
Sbjct: 1318 AFIVIDRSANISGLCHRSEMAE 1339



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 153/363 (42%), Gaps = 34/363 (9%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSC 61
            W G +  V +  L + L   +RG  R  DA D + L  ++E N        F VG  V  
Sbjct: 1038 WLGFINNVADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKN--------FPVGSAVKV 1089

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 121
             V  +D  K         L L        LS   +  GM+L   V  + +   I+     
Sbjct: 1090 HVTAVDSQKGR-------LDLSAKRRSDKLSFSDISVGMILPGRVTKVTERQVIMQL-TD 1141

Query: 122  SFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVT 174
            +  G +   ++A++      P +     +L+  V ++D+  K + LS  P  V  S    
Sbjct: 1142 TIVGAVDLIDMADDY-TKANPTIYQKNEVLRACVVAVDKANKKISLSLRPSKVLSSSLPV 1200

Query: 175  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
            +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L +++    WK+ + 
Sbjct: 1201 QDREITSMKDLKVNDVVRGFVRRVADSGLFVTVGHGVTVYVRVSDLSDSY-LKEWKDSFQ 1259

Query: 235  QHKKVNARILFVDPTSRAVGLTLNPYLLHN--RAPP--SHVKVGDIYDQSKVVRVDRGLG 290
              + V  RI  VDP    + ++L   +L    +AP   S +K G I    KV +V+    
Sbjct: 1260 ADQLVKGRITVVDPEHNKLQMSLKDSVLDPDYKAPLTLSDLKPGQIV-TGKVRKVEEFGA 1318

Query: 291  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
             ++   S  +S   +   S++AE+ V      ++EG  V+ +I+     +G  +  LKAS
Sbjct: 1319 FIVIDRSANISGLCHR--SEMAEKRVDDARTLFEEGDAVKAKIIKIDREQGKVSFGLKAS 1376

Query: 351  AFE 353
             F+
Sbjct: 1377 YFD 1379


>gi|225559332|gb|EEH07615.1| U3 snoRNP-associated protein Rrp5 [Ajellomyces capsulatus G186AR]
          Length = 1817

 Score =  419 bits (1076), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 390/1434 (27%), Positives = 680/1434 (47%), Gaps = 186/1434 (12%)

Query: 459  ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 514
            +TK+E   G +V+F +   GF   S L  D     SS    Y V    + RI+     S 
Sbjct: 477  VTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVG---FSA 533

Query: 515  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 565
              NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 534  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 592

Query: 566  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 623
            P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 593  PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 649

Query: 624  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 650  DILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 709

Query: 684  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 743
            +V+++  ++ +S K    S+       EH              H G+             
Sbjct: 710  NVDADFRKLVVSCKDQLSSTEAYKRALEHI-------------HPGN------------T 744

Query: 744  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI----------QAAILDV 793
            + G V E ++  +++  E+   V      H   G    +G+ +          +  IL++
Sbjct: 745  VSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNM 804

Query: 794  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYL 852
             K+ RL+ ++ K           S +QA+++       +DL     V   V+ I+ +   
Sbjct: 805  QKSHRLIKVTNKP----------SLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLF 854

Query: 853  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 912
            V  L      +    V D +  K P   +   Q +  TV ++       R +L LK    
Sbjct: 855  VEFLGGLTGFVPKRLVDDDHVNK-PSFGYALAQPISLTVQSIEDDRQ--RFILTLKEPHT 911

Query: 913  TETSSSKRAKKKSSYD------------------VGSLVQAEITEIKPLELRLKFGIGFH 954
             +   S R K+ ++ +                   G + +A++  IK  ++ ++      
Sbjct: 912  GKQRVSDRDKESNNANQSSINPIDGDIKSLDDLTFGRITKAKVVSIKETQINVQLAENIQ 971

Query: 955  GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWE 1003
            GRI ++EV D    + +       FK  Q +  RII    A+S++  P   +S    ++E
Sbjct: 972  GRIDVSEVFDSWEAIKDRKQPLRFFKAKQILPVRIIGIHDARSHRFLPISHRSGKYPVFE 1031

Query: 1004 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1063
            LS KPS L  +++    L     V IG    G+V  + ++   ++IS +++ +L + D +
Sbjct: 1032 LSAKPSSLESTDLD---LLSLDKVKIGSAWIGFVNNIGDDCLWISISPNVRGRLRLTDVS 1088

Query: 1064 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1123
             + S L +    F +G A+  HV  ++ +K  L L  +    G S   + IS+       
Sbjct: 1089 DDLSLLSDITTNFPVGSAIKVHVTGVDTDKNRLDLSAK---HGGSPNKLTISD------F 1139

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
             +G+I+ GR++++      ++VQ+   + G ++  ++                 D  S  
Sbjct: 1140 SKGEILLGRVTRVTEH--QVLVQLSDTVVGAINLIDMA----------------DDYSKI 1181

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
            +   F K ++L +         +++  +  L  M S+     S  +  P   +  I  + 
Sbjct: 1182 NPADFHKNEILRVC-----VVDIDVPKKKILLSMRSSRVLSSSLPIQDP--EISSISQIK 1234

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
             N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +LV GRV+  +
Sbjct: 1235 VNDIVRGFVRRVADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVILAD 1294

Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGL 1362
            P S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I+ T NL GL
Sbjct: 1295 PESNKLQMSLKQSVLDPNYKTPIT-IKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGL 1353

Query: 1363 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEE 1422
            CH +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+  D       +
Sbjct: 1354 CHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKDSDDESDGEDVQ 1413

Query: 1423 ESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQ 1482
            +  E       Y+             D+++ES D  S+    +E   +    E    D  
Sbjct: 1414 DESEENVSESEYD----------GGMDLELESGDDISMGGVDLEDTMNGDNSESGSSDGD 1463

Query: 1483 PDM----DNGIS------------QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAE 1526
              M    D GI+             N   TDE    D  ++  A  K+K+ R+QEI+   
Sbjct: 1464 VQMTGTKDAGITGGLVTSGFDWNGNNNIGTDEDNESDSDSDNKAAVKKKKRRKQEIQVDR 1523

Query: 1527 ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1586
               L+ + P++  ++ERL+   PNSS +W+KYMAF L +++V+KAR IAERAL++I+I +
Sbjct: 1524 TGDLDTNGPQSVADYERLLLGEPNSSLLWLKYMAFQLELSEVDKAREIAERALRSISIGQ 1583

Query: 1587 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1646
            + EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ ++  AD
Sbjct: 1584 DTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGKHDKAD 1641

Query: 1647 ELLYKMI-KKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAI 1703
            EL   ++ KKF  S  ++L     L     + E  +A++ RA+ SLP H H+   S+   
Sbjct: 1642 ELFQAILKKKFTQSPNIYLNFATFLFDTLAEPERGRALLPRAIQSLPTHTHVDITSKFGQ 1701

Query: 1704 LEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1761
            LEF+  NG  +RGR++FEG++S +PKR DLW++ LD EI+ GD++ +R LF R + L  P
Sbjct: 1702 LEFRSPNGDIERGRTIFEGLISSFPKRVDLWNVLLDLEIKNGDMEQVRRLFGRVLGLGHP 1761

Query: 1762 --------------PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
                           K+ KF FKK+L +E+  G+E+ ++ VK +A +YV +  A
Sbjct: 1762 IAADGTKPGAKRLKDKQAKFFFKKWLAFEEKTGDEKMVDEVKARAADYVRAIKA 1815



 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 184/748 (24%), Positives = 321/748 (42%), Gaps = 52/748 (6%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNLL--------- 49
           K+ G V+ +N  D+ + LP  L G   L   +  L   ++  + ++++            
Sbjct: 162 KILGQVSSINAHDIGLSLPNNLTGYIPLTAVSKTLQQKIEKLLNSSQEEDDNSDGDDDGD 221

Query: 50  -----PTIFHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 101
                 + F +GQ +   V   + +    K  GK+ I LS+       GLS   +     
Sbjct: 222 DDLDLKSYFKLGQYLRAAVTSTETEVNHGKIKGKKHIELSVDPREANSGLSKSDLVVNAT 281

Query: 102 LTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRK 158
           + A V S+EDHG ++  GL      GF+    +  +   + +K G +   VV   +    
Sbjct: 282 VQASVLSVEDHGLVMDLGLEDGQTRGFMSSKEIPHDLELLQIKEGTVFLCVVTGHNANGS 341

Query: 159 VVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
           VV LS++  T              +I+  +PG      +  +   G+    +      VD
Sbjct: 342 VVKLSANLPTAGSIKKSHFLTSAPTINSFLPGTAAEILLTQVTSTGMAGKIMGMLDAVVD 401

Query: 217 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN---------PYLLHNRAP 267
           I     T    +    Y+   K+  R++   PT+  + L  +         P +L +++ 
Sbjct: 402 IVQSGATAGKEDITARYHVGAKIKGRLICTFPTAEPLKLGFSILDHVVKFTPTVLDHKSS 461

Query: 268 PSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 326
              V  +  I  + KV +V+ GLG+ +              +SD   + +   +  Y   
Sbjct: 462 CEGVPAISAIVPEVKVTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVD 521

Query: 327 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAI 381
           S    RI+GF  L+ L    L+    +       DV  G VVKGK+    I  D   G I
Sbjct: 522 STHEARIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLI 581

Query: 382 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 439
           V    G+  L P  HMS+ ++  P KKF+ G ++  R+L V  + +++ +T KKTL+ S+
Sbjct: 582 VSLADGISGLVPGMHMSDTKLQHPEKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSE 641

Query: 440 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 499
            +    Y++      + G I  I+ HG  V+FY  V+GF P SE+      +P+  +++G
Sbjct: 642 SSTWCDYSDILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIG 701

Query: 500 QVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYV 555
           QVV    ++     R++ +S    +  T   +  L  +  G+ VSG V   +   +++ +
Sbjct: 702 QVVNVHALNVDADFRKLVVSCKDQLSSTEAYKRALEHIHPGNTVSGTVFEKSNEDILLKL 761

Query: 556 IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLI 612
              G     +  EH++D          + I+ G + ++LL+L+ + S+ L+  + K SL 
Sbjct: 762 EDSGLV-ARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNMQKSHRLIKVTNKPSLK 820

Query: 613 NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 670
            + Q  +LP+    +   S V G+V NII  G FV FLG LTGF P+    D      S 
Sbjct: 821 QARQRGELPAKFEDLEEGSKVTGFVKNIIADGLFVEFLGGLTGFVPKRLVDDDHVNKPSF 880

Query: 671 TYYVGQSVRSNILDVNSETGRITLSLKQ 698
            Y + Q +   +  +  +  R  L+LK+
Sbjct: 881 GYALAQPISLTVQSIEDDRQRFILTLKE 908



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 22/248 (8%)

Query: 180  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 239
            ++I     G ++  RV  + E+ V++       G +++  + + +   N   D+++++ +
Sbjct: 1134 LTISDFSKGEILLGRVTRVTEHQVLVQLSDTVVGAINLIDMADDYSKIN-PADFHKNEIL 1192

Query: 240  NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGL 289
               ++ +D   + + L++    + + + P         S +KV DI  +  V RV D GL
Sbjct: 1193 RVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSISQIKVNDIV-RGFVRRVADNGL 1251

Query: 290  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 349
             + L    T     AYV ISD+++  +++ + +++    VR R++            LK 
Sbjct: 1252 FVTLGHDVT-----AYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLKQ 1306

Query: 350  SAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVK 404
            S  +       T  D+K G  V GKV  V+ FGA +   G   +  LC    M+E ++  
Sbjct: 1307 SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVED 1366

Query: 405  PGKKFKVG 412
              K F+ G
Sbjct: 1367 ARKLFEKG 1374


>gi|207342136|gb|EDZ69994.1| YMR229Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1729

 Score =  418 bits (1075), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 379/1310 (28%), Positives = 625/1310 (47%), Gaps = 185/1310 (14%)

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 614
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 615  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 729  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 782
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 783  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 838  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 892
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 893  ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 942
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 943  LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 993
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 994  --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1051
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1052 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
             VDI   NM T I   D + GR+ KI      +++ +G  + G    T+     ++D   
Sbjct: 1077 HVDI---NMST-IKVDDELPGRVLKIAEKY--VLLDLGNKVTGISFITD----ALNDFSL 1126

Query: 1171 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1230
               E   D ++       +   VL +    +    +ELSLRS+     S  S        
Sbjct: 1127 TLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH------- 1171

Query: 1231 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1290
                     EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +K + 
Sbjct: 1172 ---------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYK 1222

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIK 1343
              + V G+V++ +  S R+ +TL+        +SEIN         S++  GD+  G IK
Sbjct: 1223 PMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFEGTIK 1273

Query: 1344 RVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
             V  +G+F+ ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK++ISL
Sbjct: 1274 NVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISL 1333

Query: 1403 GMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL 1462
             +K+S+F  +A   +++S   +    +++   +   ++ ++     D D ES+ G     
Sbjct: 1334 SLKASHFSKEA---ELASTTTTTTTADQLEKEDEDEVMADA--GFNDSDSESDIGDQ--- 1385

Query: 1463 AQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK----EE 1517
                           + D +P+   +G+S + G    A  +D+        +++    E 
Sbjct: 1386 ------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTEN 1433

Query: 1518 REQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK 1570
            ++ + +  +E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++++EK
Sbjct: 1434 KKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEK 1493

Query: 1571 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1630
            AR +AERAL+TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D   +H 
Sbjct: 1494 ARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHT 1551

Query: 1631 ALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQRALLS 1688
             LLG+YE +E+   A EL     KKF      +W+     L+   +E   + ++  AL +
Sbjct: 1552 KLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKA 1611

Query: 1689 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1748
            LP+  HI+ + + A LEF  G  +RGRS+FEG++++  KR DLW++Y+DQE++  D   +
Sbjct: 1612 LPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADALKRIDLWNVYVDQEVKAKDKKKV 1671

Query: 1749 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
              LFER I+  +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1672 EDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  173 bits (439), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 283/1259 (22%), Positives = 539/1259 (42%), Gaps = 178/1259 (14%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRG---------------------LARAADALD----PIL 37
            L G ++ + ++DL I    G+ G                     +    DA D     + 
Sbjct: 122  LLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAADEKKSKVE 181

Query: 38   DNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLR 83
            D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K++I L++ 
Sbjct: 182  DAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELTIE 241

Query: 84   LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 143
             S +      + V+   +  A VKSIEDHG  L  GLP FTGF+ + +      +   PG
Sbjct: 242  PSSVNTYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKL--LPG 298

Query: 144  LLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
             +  G + +  DR+   + +++D    S    K  +  SID ++PG +V    +SI +NG
Sbjct: 299  AVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLLCESITKNG 352

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            +        +G V++ HL+ TF   + K+ +     +  RI+                 L
Sbjct: 353  IAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAIGSSIRCRII---------------ACL 396

Query: 263  HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------STPAYVTIS 309
             N+   S  KV  + +   +++++  L     + + P+             S   Y+ + 
Sbjct: 397  ENK---SGDKVLILSNLPHILKLEDALRSTEGLDAFPIGYTFESCSIKGRDSEYLYLALD 453

Query: 310  D-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
            D     V    V ++E      S    R+LG+  ++ +          +      +D+  
Sbjct: 454  DDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPI 509

Query: 365  G-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            G ++   ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G+++  RV+ V
Sbjct: 510  GELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISV 569

Query: 423  KSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNG 474
             S+  + VT KK+LV    ++L ++S+Y  A +       T   +   + +GC + F+ G
Sbjct: 570  NSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGG 629

Query: 475  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 529
            + GF P SE+       P     +GQ V  +++      RRI  +  +   + ++     
Sbjct: 630  LSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKDTI 689

Query: 530  DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGY 588
            +++V   ++++  V   T ++V+V +   G  +G I   HL+D  +E        ++ G 
Sbjct: 690  ENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQLKKLRIGT 748

Query: 589  EFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETG 642
            E   L++  D  +    +S K SLI  A++  LP    D   ++ +  +H Y+ +I + G
Sbjct: 749  ELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKG 808

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
             FV F G+  G    S AVD +  D+SK +Y+ QSV   +L  + +  +  LSLK     
Sbjct: 809  LFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLKAPKVK 868

Query: 703  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSF 760
                        +E+ +          S +K  +   IGS+++ K+   + N   V+++ 
Sbjct: 869  EEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKSVKKNQLNVILAA 916

Query: 761  EEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVDLSLKTVFI 809
              H         D Y  IT  +   +  +   VI+  I+   DV K+ + + ++ K    
Sbjct: 917  NLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLPITHKISKA 975

Query: 810  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASV 868
                 +    + + K+   ++ +++ + Q +   V     N+L L++ P     I    +
Sbjct: 976  SVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLKARISLLDL 1035

Query: 869  SDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSKRAKKKSSY 927
            +D N   F +    N +SV     AL    ++  R    + AI ++    +      S+ 
Sbjct: 1036 AD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN-----MSTI 1085

Query: 928  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
             V   +   + +I    + L  G    G   IT+  +D S  ++  F + KI   +   +
Sbjct: 1086 KVDDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KINNVIPTTV 1144

Query: 988  IA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1045
            ++  + NK         ELS++ +      I S       D+  G+ V G V  V+++  
Sbjct: 1145 LSVDEQNKK-------IELSLRSATAKTRSIKS-----HEDLKQGEIVDGIVKNVNDKGI 1192

Query: 1046 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1105
             + +SR ++A  F+  S    S L+E+++ +   + V G V++ +++ + + L LR  + 
Sbjct: 1193 FVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-ISLTLRESEI 1249

Query: 1106 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKN 1162
                K +   +D     I  GD+  G I  +     G+ V++    ++ G  H TE+ +
Sbjct: 1250 NGDLKVLKTYSD-----IKAGDVFEGTIKNVTD--FGVFVKLDNTVNVTGLAHITEIAD 1301



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 39/331 (11%)

Query: 92   SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 144
            SLE +  G  LT +V +   +   L    P     +   +LA+N          V P G 
Sbjct: 996  SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISIDLLVPGMMVSTRVQSILENGV 203
             LQ  V SIDR    V      + + K  V  ++  I +D  +PG     RV  I E  V
Sbjct: 1055 ALQVKVASIDREHGFV------NAIGKSHVDINMSTIKVDDELPG-----RVLKIAEKYV 1103

Query: 204  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNP 259
            +L      TG   I    N F  T  K  +    K+N      +L VD  ++ + L+L  
Sbjct: 1104 LLDLGNKVTGISFITDALNDFSLT-LKEAFED--KINNVIPTTVLSVDEQNKKIELSLRS 1160

Query: 260  YLLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 317
                 R+  SH  +K G+I D       D+G+ + L          A+V +S +++  ++
Sbjct: 1161 ATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLK 1215

Query: 318  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIA 374
            + +K YK    V  +++     +   +  L+ S   G   ++ T+SD+K G V +G +  
Sbjct: 1216 EWKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKN 1274

Query: 375  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
            V  FG  V+    V  +  L H++E    KP
Sbjct: 1275 VTDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304


>gi|328767961|gb|EGF78009.1| hypothetical protein BATDEDRAFT_13567 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1670

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 418/1535 (27%), Positives = 704/1535 (45%), Gaps = 206/1535 (13%)

Query: 344  TGILKASAFEGLVFTH-SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 402
            T I+  + F+    T  S ++PG +V   +  V   G  +       A     H+    I
Sbjct: 261  TKIISLTFFDLFYMTELSHIRPGSLVTATIQDVLENGLALHIFKFFSATIDWFHLGNGHI 320

Query: 403  VKPG---KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHG 457
                    +FK G ++  RVL + +  K+I +T    L+  K     S+   T  +  + 
Sbjct: 321  SDKNDIKNQFKKGQKVASRVLYLNTAEKKIGLTLIPELILQKSPNFKSFEIGT--VSENI 378

Query: 458  WITKIEK-HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
             + +++   G  V++     G+   S +  D   +    +  G   + RI+     +  +
Sbjct: 379  TVLRVDPLFGLLVQYPGDRLGYVHMSRIADDHITKIDKAFRTGTTHRGRIVDHDYCNNLL 438

Query: 517  NLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 572
             ++F   P  V++  L    +K G  V G +  +TP+ VVV V       G  P+ H +D
Sbjct: 439  LIAFA--PKIVNQPFLRLVDIKAGIKVKGQIRRITPSGVVVSVTDS--INGFCPSNHFSD 494

Query: 573  HLEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
                      + +P   F +       +L +++    L+L+ K SL+ S  +LP+  S+ 
Sbjct: 495  --------VKIARPEKLFKEGATVAFHVLSVNSADKQLILTHKKSLMES--KLPTITSYT 544

Query: 626  --HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
               P  +  G + ++   GC V F   +    P  +  + +       + +GQ+++  ++
Sbjct: 545  EAQPGQITMGIITSVKNFGCIVSFYNNVHAIVPIVELSETRMDTPQDHFKIGQAIKCRVV 604

Query: 684  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG---FII 740
             V++        L +  C    ASF         K+A L      G++L  V G     +
Sbjct: 605  SVDA--------LNEKMC----ASF---------KLAAL------GNKLDSVSGTSTIQV 637

Query: 741  GSVIEG-KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 799
            G + +G  V +S D   V+S    +D+      H       +  ++ Q+    +    ++
Sbjct: 638  GQIYDGIVVTKSKD--TVISRVNDTDLVSISKSH-----LSDYPTIAQSLYDSLNTGSKI 690

Query: 800  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKENYLVL 854
                L  + ID++ +    R   K     +  +D GV +  + I +      V+  Y  L
Sbjct: 691  T--GLLAINIDKYGKPLITR---KHSLIFQVQQDNGVRKASDMINDQVCFGFVRNIYGKL 745

Query: 855  SLPEYNH----SIGYASVSDYNTQKFPQKQFLNGQSVIA----TVMALPSSSTAGRLLLL 906
               E+      ++   ++SD N      +    GQSV A       A   + T  R+L +
Sbjct: 746  CFVEFTGGVVGAVSLQNISD-NFVSSVSEHLQIGQSVTAYQVPAWTATQVAFTQQRILAM 804

Query: 907  LKAISETETSSSKRAKKK---------SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 957
            L   ++ +     R  +           S     L++  +       + +       GRI
Sbjct: 805  LPKATKVKDMVQNRVLENPVDPHLSSLQSIKPDMLIKCTVKSFDDTYINVCIADNLDGRI 864

Query: 958  HITEVNDDKSNVVE--NLFSNFKIGQTVTARII----------AKSNKPDMKKSFLWELS 1005
              TE+ D    + +     ++F+IGQ++ A++I            +N     K    +L+
Sbjct: 865  QATEIFDSFDQITDPKQPMASFQIGQSLQAKVIEVHIFKPHFHMTTNDKKSPKKVWIDLT 924

Query: 1006 IKPSML-------TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1058
            ++PS +       T S+I  KL   E    IG    G +  + +    + I   L   +F
Sbjct: 925  VRPSFIATENALTTASQIRPKLKTLE----IGSEHIGCIQHIGSRTLRILIQGGLLGDVF 980

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +D + +   +      F +G+ +   V+  + +KK   L L     G S K VD+    
Sbjct: 981  NMDISKDVDVVNNASSHFAVGQLIKCFVIFKDTQKKTFNLSLV----GASQKPVDM---- 1032

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
                   G  V G ++KI   + G+ ++IG H+  RVH T+L            DE    
Sbjct: 1033 ----FSVGQKVVGYVAKI-DPLKGINIRIGSHIIARVHITDLA-----------DEFNES 1076

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
            P   Y   Q V+  V+ I  T     H   SLR S              D   P   +  
Sbjct: 1077 PTDIYTIRQLVQAVVVRID-TENNLIHC--SLRKSA----------FKPDTKFP---IFP 1120

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
                    IVQGY+++++ KGCF+ L+  +  +V +  LSD +V   +  F  G LV GR
Sbjct: 1121 FSSFQKGSIVQGYIQSISEKGCFVGLTNDIYGRVKMCELSDSFVVDWKSAFKPGMLVKGR 1180

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            ++S+   SK++E++ K S   T     +   S++ VG    G I+R+E YGLFI ++N+ 
Sbjct: 1181 IISINTNSKQIELSFKKS-LVTNDAGNLLKFSDIKVGQKSEGVIRRIEDYGLFIVLKNSE 1239

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            L GLCHV E+++  V N+E++Y  G+ V   +L+ + +K++ISL +K S F ND D L+ 
Sbjct: 1240 LCGLCHVLEVADRPVKNLESLYSIGDSVMTVVLRTNPKKQQISLSIKPSRF-NDDDVLEN 1298

Query: 1419 SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNL 1478
            S EE   ++ E   S N S+ +++     ++ +ME  D   +  +               
Sbjct: 1299 SIEEAKVQSSE---SENDSAFVDDE----ENDEMEQSDDEDINFSW-------------- 1337

Query: 1479 DDEQPDMDNGISQNQG-------------HTDEAKTIDEKNNRHAKKKEKEEREQEIRAA 1525
             D QP  +  +  +                +D  +    K  R AKK+E+ + E+ I   
Sbjct: 1338 -DTQPTAEKSVMHDSDSDSSSDSMQSGDDESDGDQQNKNKRKRRAKKRERAQEEKRIANK 1396

Query: 1526 EERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            E  L+E D  P T ++FERL+  SPN+S++WIKYM F L+MA++EKAR +AERAL+TIN 
Sbjct: 1397 ELELVEGDHPPETAEDFERLLLGSPNNSYIWIKYMVFYLNMAEIEKARQVAERALKTINF 1456

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1644
            REE E+LNIW+A+ NLEN YGN   + + KV +RA+Q  D K V+  +  +YERT +++L
Sbjct: 1457 REEQERLNIWIAFLNLENTYGNV--DTLSKVLERAIQMNDAKTVYFHMAKIYERTGKDEL 1514

Query: 1645 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1703
              +L   M KKFK S +VW+     LL   +Q+  + ++ R++ SLP+ KH+   S+ A 
Sbjct: 1515 CIKLYQTMCKKFKDSRQVWVSYACFLLTHGKQDAARQLLSRSMQSLPKRKHVDVTSKFAQ 1574

Query: 1704 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1763
            LEF +G  +RGR++FEG+++  PKRTDLWS+Y+D EIR GD+ ++R LF+R +      +
Sbjct: 1575 LEFNHGEPERGRTIFEGLMNSCPKRTDLWSVYIDMEIRAGDISIVRRLFDRVVQREWSAR 1634

Query: 1764 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            KMKF FKKY E+EK  G+E  ++ VKQ A+++VES
Sbjct: 1635 KMKFFFKKYFEFEKKHGDENGVQNVKQAAIKFVES 1669



 Score =  318 bits (816), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 354/1364 (25%), Positives = 584/1364 (42%), Gaps = 213/1364 (15%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL---------DNEIEANEDNL--- 48
            M L GVV ++N  ++V+ LP  L G     +  D I          DNE E  + N    
Sbjct: 90   MCLLGVVKDINSLEMVVSLPNQLTGFVSLTEISDYISKQVEAAVDSDNEDEDTDMNSSAK 149

Query: 49   ----LPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 101
                LP++   F +GQ V C ++  D   K    ++I LSL+   + +G+    +  GMV
Sbjct: 150  DELDLPSLESYFQIGQSVVCKIISADQTSKN---KRIDLSLKPEAVNEGIEKTNIVSGMV 206

Query: 102  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVY 161
            L   V S EDHGYIL  G+   +GFL      E++   +    LL        +T  +V 
Sbjct: 207  LPMCVTSKEDHGYILSLGIKGVSGFLKN----EHASAYLSSKNLL-------GKTFCLVS 255

Query: 162  LSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 220
            L+ +   +      DL  ++ +  + PG +V+  +Q +LENG+ L    +F+ T+D FHL
Sbjct: 256  LNLEYTKIISLTFFDLFYMTELSHIRPGSLVTATIQDVLENGLALHIFKFFSATIDWFHL 315

Query: 221  QNTFPT--TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-SHVKVGDIY 277
             N   +   + KN + + +KV +R+L+++   + +GLTL P L+  ++P     ++G + 
Sbjct: 316  GNGHISDKNDIKNQFKKGQKVASRVLYLNTAEKKIGLTLIPELILQKSPNFKSFEIGTVS 375

Query: 278  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 337
            +   V+RVD   GLL+  P   +    YV +S +A++ + K++K ++ G+  R RI+   
Sbjct: 376  ENITVLRVDPLFGLLVQYPGDRL---GYVHMSRIADDHITKIDKAFRTGTTHRGRIVDHD 432

Query: 338  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 397
            +   L                  D+K G+ VKG++  +   G +V     +   CP  H 
Sbjct: 433  YCNNLLLIAFAPKIVNQPFLRLVDIKAGIKVKGQIRRITPSGVVVSVTDSINGFCPSNHF 492

Query: 398  SEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLIT 455
            S+ +I +P K FK GA + F VL V S  K++ +THKK+L++SKL  ++SY EA    IT
Sbjct: 493  SDVKIARPEKLFKEGATVAFHVLSVNSADKQLILTHKKSLMESKLPTITSYTEAQPGQIT 552

Query: 456  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515
             G IT ++  GC V FYN V    P  EL       P   + +GQ +KCR++S    + +
Sbjct: 553  MGIITSVKNFGCIVSFYNNVHAIVPIVELSETRMDTPQDHFKIGQAIKCRVVSVDALNEK 612

Query: 516  INLSFMM-----KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            +  SF +     K   VS    +++G +  G+V   + + V+  V        +I   HL
Sbjct: 613  MCASFKLAALGNKLDSVSGTSTIQVGQIYDGIVVTKSKDTVISRV--NDTDLVSISKSHL 670

Query: 571  ADHLEHATVMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPS--DASHIHP 627
            +D+   A  +   +  G +   LL ++ ++    L++ K+SLI   QQ      AS +  
Sbjct: 671  SDYPTIAQSLYDSLNTGSKITGLLAINIDKYGKPLITRKHSLIFQVQQDNGVRKASDMIN 730

Query: 628  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
            + V  G+V NI    CFV F G + G        D   + +S+   +GQSV         
Sbjct: 731  DQVCFGFVRNIYGKLCFVEFTGGVVGAVSLQNISDNFVSSVSEHLQIGQSVT-------- 782

Query: 688  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 747
                   + +    ++T  +F Q+  L     AML  +         V+  +   V+E  
Sbjct: 783  -------AYQVPAWTATQVAFTQQRIL-----AMLPKATK-------VKDMVQNRVLENP 823

Query: 748  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 807
            V            + H      I    L   TV+S        ++V  A+ L      T 
Sbjct: 824  V------------DPHLSSLQSIKPDMLIKCTVKS---FDDTYINVCIADNLDGRIQATE 868

Query: 808  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI-VEIVKENYLVLSLPEYNHSIGYA 866
              D F +    +Q         AS  +G       I V I K ++ + +           
Sbjct: 869  IFDSFDQITDPKQPM-------ASFQIGQSLQAKVIEVHIFKPHFHMTT----------- 910

Query: 867  SVSDYNTQKFPQKQFLN---GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK 923
                 N +K P+K +++     S IAT  AL                    T++S+   K
Sbjct: 911  -----NDKKSPKKVWIDLTVRPSFIATENAL--------------------TTASQIRPK 945

Query: 924  KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 983
              + ++GS     I  I    LR+    G  G +   +++ D  +VV N  S+F +GQ +
Sbjct: 946  LKTLEIGSEHIGCIQHIGSRTLRILIQGGLLGDVFNMDISKD-VDVVNNASSHFAVGQLI 1004

Query: 984  TARIIAKSNKPDMKKSFLWEL---SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1040
               +I K  +   KK+F   L   S KP  +                S+GQ+V GYV K+
Sbjct: 1005 KCFVIFKDTQ---KKTFNLSLVGASQKPVDM---------------FSVGQKVVGYVAKI 1046

Query: 1041 DNEWAL-LTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGHVLSINKEKKL 1095
            D    + + I  H+ A++ I D A E    P+++      + I + V   V+ I+ E  L
Sbjct: 1047 DPLKGINIRIGSHIIARVHITDLADEFNESPTDI------YTIRQLVQAVVVRIDTENNL 1100

Query: 1096 LRLVLR--PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1153
            +   LR   F+          S+        +G IV G I  I     G  V +   +YG
Sbjct: 1101 IHCSLRKSAFKPDTKFPIFPFSS------FQKGSIVQGYIQSI--SEKGCFVGLTNDIYG 1152

Query: 1154 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1213
            RV   EL +  V D  S      F P      G  VK +++ I+   +    +ELS + S
Sbjct: 1153 RVKMCELSDSFVVDWKSA-----FKP------GMLVKGRIISINTNSK---QIELSFKKS 1198

Query: 1214 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SRKLDAKV 1272
            L              V     +L K  D+      +G ++ +   G FI+L + +L    
Sbjct: 1199 L--------------VTNDAGNLLKFSDIKVGQKSEGVIRRIEDYGLFIVLKNSELCGLC 1244

Query: 1273 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
             +  ++D  V++ E  + IG  V   VL   P  +++ +++K S
Sbjct: 1245 HVLEVADRPVKNLESLYSIGDSVMTVVLRTNPKKQQISLSIKPS 1288



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 120/260 (46%), Gaps = 12/260 (4%)

Query: 282  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 341
            V ++D   G+ + I S  +   A V I+D+A+E        Y     V+  ++       
Sbjct: 1043 VAKIDPLKGINIRIGSHII---ARVHITDLADEFNESPTDIYTIRQLVQAVVVRIDTENN 1099

Query: 342  LATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 397
            L    L+ SAF+      +F  S  + G +V+G + ++   G  V     +     +  +
Sbjct: 1100 LIHCSLRKSAFKPDTKFPIFPFSSFQKGSIVQGYIQSISEKGCFVGLTNDIYGRVKMCEL 1159

Query: 398  SEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLIT 455
            S+  +V     FK G  +  R++ +   SK+I ++ KK+LV +    L  +++      +
Sbjct: 1160 SDSFVVDWKSAFKPGMLVKGRIISINTNSKQIELSFKKSLVTNDAGNLLKFSDIKVGQKS 1219

Query: 456  HGWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 514
             G I +IE +G F+   N  + G     E+   P     S+Y +G  V   ++ + P  +
Sbjct: 1220 EGVIRRIEDYGLFIVLKNSELCGLCHVLEVADRPVKNLESLYSIGDSVMTVVLRTNPKKQ 1279

Query: 515  RINLSFMMKPTRVSEDDLVK 534
            +I+LS  +KP+R ++DD+++
Sbjct: 1280 QISLS--IKPSRFNDDDVLE 1297


>gi|320582873|gb|EFW97090.1| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Ogataea parapolymorpha DL-1]
          Length = 1659

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 408/1503 (27%), Positives = 694/1503 (46%), Gaps = 212/1503 (14%)

Query: 364  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--- 420
            PGM V+  V  V   G I +  G   A  PL H+  +E  +    F VG++L  RV+   
Sbjct: 295  PGMGVEALVTEVTKEGVICKLFGVGNASIPLSHLGVYEYSELKHNFAVGSKLKSRVMVSH 354

Query: 421  -GVKSKRITVT---HKKTL---VKSKLAILSSYAEATDRLITHGW--ITKIEKHGCFVRF 471
                 KR  ++   H K+L   V  + + L ++       I H +  +T   K   ++  
Sbjct: 355  VRAGDKRFLLSVLPHIKSLNANVFGETSALEAFP------IGHIFDSVTIKGKDSSYIYV 408

Query: 472  YNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
              G      ++ +      +   M + +G   + R++     S   NL  +    +  E 
Sbjct: 409  DVGSDFAIGQAHITRVSSTKDLDMDFKIGSTHRARVLG---YSATDNLYILTLDKQQIER 465

Query: 531  DLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMK 581
              +++     G L++  V  V     +V    + + +G +P  +++D    + E    + 
Sbjct: 466  KFLRVEDIPAGELINCEVRSVDAEKGIVVKFEEDF-EGIVPPAYMSDVKLIYPERKFKIG 524

Query: 582  SVIKPGYEFDQLLVLDNES--SNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNI 638
            S IK      ++L + N+S  S + ++ K SL+N   + + S    +         +  +
Sbjct: 525  SKIKG-----RVLRVVNQSGKSRIYVTLKKSLVNIENEDVVSSIEDVEAGKKTFATIDKM 579

Query: 639  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            + TGC VRF G +  F P S+  +           +GQ+V+  ++ V+ E  RI    K 
Sbjct: 580  LPTGCVVRFFGFVKAFLPNSEISETFVKRPEDHVKLGQTVKVRVVSVDKENNRI----KV 635

Query: 699  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVV 757
            SC  S   S MQ+                     K +   + G S+++ +V E      +
Sbjct: 636  SCRVSEVLSDMQK---------------------KTLSSIVPGRSIVDVQVVEKEKDSAI 674

Query: 758  VSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTV 807
            V   E S + G I    L     E           G+ ++  +L+     R+V LS K  
Sbjct: 675  VELTE-SGLRGIIYAGHLGEGNYEQSRAQLKKLQIGAELKTLVLEKDVRSRVVKLSAKQS 733

Query: 808  FIDRFREANSNRQAQKKK-----RKREASKDL--GVHQTV--NAIVEIVKENYLVLSLPE 858
             I         + AQ+ K     R  E S +L  G  ++V  N +          L+LP 
Sbjct: 734  LI---------KDAQQGKLPLQYRDIEVSDELLHGFVKSVTPNGVFVSFGNGLTGLALPR 784

Query: 859  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET----- 913
              H++    V D       QK F   QSV   V+ +  ++   R L+ +K  S T     
Sbjct: 785  --HAV-EKPVDDL------QKAFFTNQSVTCHVIRVDDANK--RFLVSMKKESSTTSEPA 833

Query: 914  ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VE 971
            E     + K    + VG   +A++  IK  +L ++      GRI ++E+ DD S +  V+
Sbjct: 834  ENPVDSKMKTLDDFTVGKNTKAKVKSIKQTQLNVQLADNLQGRIDVSELFDDVSEIKDVK 893

Query: 972  NLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK---LLFEE---- 1024
               S F+ G+ +  +II      D +      +S K +  TV E+ +K   +L  +    
Sbjct: 894  RPLSQFQAGEVLDVKIIGFH---DSRNHRFLPISHKRTNQTVLELSAKKSSILSHKPVVP 950

Query: 1025 ---CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1081
                D  +G   TGY+      +  +TIS +L+A++ ++D + + S+ +  ++ + +G  
Sbjct: 951  ASIGDFHLGDECTGYINNFARGFLWVTISPNLRARISLMDLSDDASKFENLEKEYPVGSV 1010

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
            V   V  ++ E  +L L  R        K +    D     +  G ++  R+ K      
Sbjct: 1011 VRAKVTDLDTEHNILSLSARS-------KAITSLED-----LEVGSVIPARVLKTRESY- 1057

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
             +VV++G  + G + F       ++D L+ Y +   D  S  D        VLE+  + +
Sbjct: 1058 -VVVELGKQVSG-ISF-------ITDALNDYTDKLDDIFSTND---ICAATVLEVDHSNK 1105

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
              +   +SLR+                 D   K +   EDLSP  +V+G+VKNV + G +
Sbjct: 1106 KVY---VSLRTK----------------DVKDKRIASYEDLSPGTVVRGFVKNVANNGVY 1146

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            + L R + A V +S+LSD Y++  ++ F + + V G++   E    ++ +TLK S+  + 
Sbjct: 1147 VALGRTVHALVRVSDLSDSYLKDWKQYFKVHQPVLGKITKSEG-ENQILMTLKQSEIDSD 1205

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1380
            S S +     +   +I  G ++RV ++G+F+ ++ T N+ GLCH S+++++ V NIE+++
Sbjct: 1206 S-SLLKRFDQIQKDEIYEGSVRRVTNFGVFVNLDGTLNVSGLCHHSQIADNQVTNIESLF 1264

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE---SDEAIEEVGSYNRS 1437
              G++VKVKIL VD EK+++SLGMK+SYF  + +   +  EE+   SD++I +    N S
Sbjct: 1265 SEGDRVKVKILDVDHEKKQLSLGMKASYFTGETEEPAVEEEEDEVMSDDSIIDTAFGNES 1324

Query: 1438 SLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTD 1497
                 S  +  D D  +  G S       S       +V+ DDE   MD    + +    
Sbjct: 1325 EKDAESDYS-DDSDAPATGGLSAGFDWTASILDQAKEDVSEDDE---MDKPKRKKRKVVA 1380

Query: 1498 EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIK 1557
            E +T D                          L    P++  +FERL+  +P+SS +W+ 
Sbjct: 1381 EDQTAD--------------------------LNSRVPQSVSDFERLIVGNPDSSILWMN 1414

Query: 1558 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1617
            YM+F + +++++KAR I ERAL+TIN REE EKLNIW+A  NLEN +G   EE++   F+
Sbjct: 1415 YMSFQIQLSEIDKAREIGERALKTINYREEQEKLNIWIALLNLENMFGT--EESLEATFK 1472

Query: 1618 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQE 1676
            R+ QY DP  ++  L  +Y  +E+    D+L   M KKF      VW+     LL QQQ+
Sbjct: 1473 RSCQYMDPYVMYQKLAAIYIASEKVDKVDQLYTAMCKKFGSQHTSVWVAYGSFLL-QQQD 1531

Query: 1677 GVQA--VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1734
            G +A  V+ +AL  L +  H++ + + A LEF  G  + GRS+FEG+LS+ PKR DLW++
Sbjct: 1532 GERAREVLAKALQVLSKRDHVEVVKKFAQLEFSKGDPEHGRSLFEGLLSDVPKRIDLWNV 1591

Query: 1735 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794
            Y+DQEI+ GD   +  +FER ++  L  K+ KF F K+LE+E+   +++  +YVK KA+E
Sbjct: 1592 YIDQEIKFGDKKKVEAIFERVVTRKLTRKQAKFFFGKWLEFEEKHEDQKACDYVKAKAVE 1651

Query: 1795 YVE 1797
            Y +
Sbjct: 1652 YAQ 1654



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 198/762 (25%), Positives = 345/762 (45%), Gaps = 86/762 (11%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPI--------------------------LD 38
           G + +VN  ++V+ L   L G     +  DP+                          L 
Sbjct: 99  GQIKQVNRMEIVLSLTDNLMGFIPITNISDPLTSQLQEFDDEQEESDEEPAYGDEENTLT 158

Query: 39  NEIEANEDNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 95
           N I +++    P   T F VGQ +  IV++    KK    ++I LS+  S + + +  E 
Sbjct: 159 NGIISSKKKSFPQLVTRFQVGQWLRAIVMESTKSKK----KRIELSIEPSKVNEPMETED 214

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 155
           +    ++ A VKS+EDHG +L  G     GF+ + ++   S +D+   +LL  + +   R
Sbjct: 215 LVTNAIVQASVKSVEDHGLVLDVGKEKLGGFIAKKDV--QSLVDI-GSVLLVNIAKKDGR 271

Query: 156 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 215
           T     + S  + +S   T      SID ++PGM V   V  + + GV+         ++
Sbjct: 272 T----LICSPINKLSAVQTIS----SIDAILPGMGVEALVTEVTKEGVICKLFGVGNASI 323

Query: 216 DIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYL-------LHNRA 266
            + HL   +  +  K+++    K+ +R++   V    +   L++ P++           +
Sbjct: 324 PLSHL-GVYEYSELKHNFAVGSKLKSRVMVSHVRAGDKRFLLSVLPHIKSLNANVFGETS 382

Query: 267 PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 326
                 +G I+D   +   D    + +D+ S      A++T         + L+  +K G
Sbjct: 383 ALEAFPIGHIFDSVTIKGKDSSY-IYVDVGSDFAIGQAHIT----RVSSTKDLDMDFKIG 437

Query: 327 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS-FGAIVQFP 385
           S  R R+LG+   + L    L     E       D+  G ++  +V +VD+  G +V+F 
Sbjct: 438 STHRARVLGYSATDNLYILTLDKQQIERKFLRVEDIPAGELINCEVRSVDAEKGIVVKFE 497

Query: 386 GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK----RITVTHKKTLVK-SKL 440
              + + P  +MS+ +++ P +KFK+G+++  RVL V ++    RI VT KK+LV     
Sbjct: 498 EDFEGIVPPAYMSDVKLIYPERKFKIGSKIKGRVLRVVNQSGKSRIYVTLKKSLVNIENE 557

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
            ++SS  +      T   I K+   GC VRF+  V+ F P SE+       P     +GQ
Sbjct: 558 DVVSSIEDVEAGKKTFATIDKMLPTGCVVRFFGFVKAFLPNSEISETFVKRPEDHVKLGQ 617

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVK--LGSLVSG--VVDVVT----PNA 550
            VK R++S    + RI +S      RVSE   D+ K  L S+V G  +VDV       ++
Sbjct: 618 TVKVRVVSVDKENNRIKVS-----CRVSEVLSDMQKKTLSSIVPGRSIVDVQVVEKEKDS 672

Query: 551 VVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAK 608
            +V +   G  +G I   HL + + E +      ++ G E   L++  +  S ++ LSAK
Sbjct: 673 AIVELTESGL-RGIIYAGHLGEGNYEQSRAQLKKLQIGAELKTLVLEKDVRSRVVKLSAK 731

Query: 609 YSLINSAQQ--LPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 665
            SLI  AQQ  LP     I   + ++HG+V ++   G FV F   LTG A    AV+   
Sbjct: 732 QSLIKDAQQGKLPLQYRDIEVSDELLHGFVKSVTPNGVFVSFGNGLTGLALPRHAVEKPV 791

Query: 666 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
            DL K ++  QSV  +++ V+    R  +S+K+   ++++ +
Sbjct: 792 DDLQKAFFTNQSVTCHVIRVDDANKRFLVSMKKESSTTSEPA 833



 Score = 45.1 bits (105), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
            +    V  +D + K VY+S     V     KD +  S + L PG +V   V+++  NGV 
Sbjct: 1092 ICAATVLEVDHSNKKVYVSLRTKDV-----KDKRIASYEDLSPGTVVRGFVKNVANNGVY 1146

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 264
            ++        V +  L +++   +WK  +  H+ V  +I   +  ++ + +TL    + +
Sbjct: 1147 VALGRTVHALVRVSDLSDSY-LKDWKQYFKVHQPVLGKITKSEGENQIL-MTLKQSEIDS 1204

Query: 265  RAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 320
             +        ++  +IY+ S  VR     G+ +++  T ++       S +A+ +V  +E
Sbjct: 1205 DSSLLKRFDQIQKDEIYEGS--VRRVTNFGVFVNLDGT-LNVSGLCHHSQIADNQVTNIE 1261

Query: 321  KKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 354
              + EG  V+V+IL   H +   +  +KAS F G
Sbjct: 1262 SLFSEGDRVKVKILDVDHEKKQLSLGMKASYFTG 1295



 Score = 40.8 bits (94), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 3/155 (1%)

Query: 356  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
            + ++ D+ PG VV+G V  V + G  V     V AL  +  +S+  +    + FKV   +
Sbjct: 1121 IASYEDLSPGTVVRGFVKNVANNGVYVALGRTVHALVRVSDLSDSYLKDWKQYFKVHQPV 1180

Query: 416  VFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 473
            + ++   + + +I +T K++ + S  ++L  + +     I  G + ++   G FV     
Sbjct: 1181 LGKITKSEGENQILMTLKQSEIDSDSSLLKRFDQIQKDEIYEGSVRRVTNFGVFVNLDGT 1240

Query: 474  -GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 507
              V G    S++  +      S++  G  VK +I+
Sbjct: 1241 LNVSGLCHHSQIADNQVTNIESLFSEGDRVKVKIL 1275


>gi|156120853|ref|NP_001095573.1| protein RRP5 homolog [Bos taurus]
 gi|224493288|sp|A7MB10.1|RRP5_BOVIN RecName: Full=Protein RRP5 homolog; AltName: Full=Programmed cell
            death protein 11
 gi|154425541|gb|AAI51278.1| PDCD11 protein [Bos taurus]
          Length = 1874

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 394/1392 (28%), Positives = 648/1392 (46%), Gaps = 159/1392 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +L I LP GL+G  +  +  D   +  NE  A E+ L     LP +F
Sbjct: 84   MRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQDLVGLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  LD  K    K+ + LSL    + + LS ET++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLDTTKG--SKKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +  +R VV LS     
Sbjct: 202  YLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGVVTLSIGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L FL++F+G VD  HL      T 
Sbjct: 262  VSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     ++V A +L V P +RAV L+L P  L    P + +   ++G + D   V   
Sbjct: 322  FSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    +      T AY   + ++  +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D+KPG +VKGKV+ +   G +V+    ++ L P  H+++  I  P
Sbjct: 434  SLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ VG E+  RVL    K+K++ +T KKTLV+SKL  ++ Y +A   L THG+I +++
Sbjct: 494  EKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  PR EL  +   +P S+++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613

Query: 523  -KPTRVSEDDLVKLGSLVSG--VVDV----VTPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
              P +  E    K    VS   + DV     T + + V V+      G +PT HL+DH+ 
Sbjct: 614  SDPKQEGEGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIP-GFLPTAHLSDHVT 672

Query: 576  HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHG 633
            +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P   S IHP  ++ G
Sbjct: 673  NGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIHPGMLLIG 732

Query: 634  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            +V NI + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R+ 
Sbjct: 733  FVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRML 792

Query: 694  LSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVH 749
            LSL+ S C+  D +          LEE+  +     +  S L + +     G  ++ +V 
Sbjct: 793  LSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMALDLEVQ 852

Query: 750  ESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            E  + G V+ F E   V G +   + +  AG  +E G   +A IL+V   +  V +SL  
Sbjct: 853  EVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKLEVHVSLCH 910

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              +        NR+A+K K+  +          + AIV+ ++E++ V SL E  H   ++
Sbjct: 911  DLV--------NRKAKKLKKGSD----------LQAIVQHLEESFAVASLVETGHLAAFS 952

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK--- 922
              S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R     
Sbjct: 953  LTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVTG--LLLAIEGPAAKRTMRQTRKDSET 1010

Query: 923  ----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
                            KK +  +G +V   +  IKP  + +    G  G IH + + DD 
Sbjct: 1011 VDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDD- 1069

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML--- 1011
              V  +  +  K+G+ VTAR+I      DMK   FL            ELS++PS L   
Sbjct: 1070 VPVGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSELKED 1126

Query: 1012 ---TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEP 1066
               T++      L +      GQ VT ++  Y +  +W  + I+  ++ ++ +L ++   
Sbjct: 1127 GHTTLNTHSVSPLEKIKQYQPGQTVTCFLKKYNMVKKWLEVEIAPDIRGRIPLLLTSLSF 1186

Query: 1067 SELQEFQRRFHIGKAVTGHVLSINKEKK--LLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
              L+   ++F IG+A+   V+   +  K  L   ++ P +                  + 
Sbjct: 1187 KVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHK------------------LK 1228

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            +G++  GR+ K+ +   GL V      +GRV    +    VSD  S      F P     
Sbjct: 1229 KGEVAMGRVVKV-TPKEGLTVSFP---FGRVGRVSM--FHVSDSYSETHLEDFVP----- 1277

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
              Q V+C VL  +  V     + LSLRS     S TN    S   D     +  IEDL  
Sbjct: 1278 -QQVVRCYVLSAATPV-----LTLSLRS-----SRTNPETKSKITDP---EINSIEDLEE 1323

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVAGRVLS 1301
              +++G+VK+V   G  + L   +       ++S  +    +P ++  P GKL+  +VL 
Sbjct: 1324 GQLLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLR 1383

Query: 1302 VEPLSKRVEVTL 1313
            +      VE++L
Sbjct: 1384 LNHQESLVELSL 1395



 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 146/328 (44%), Positives = 220/328 (67%), Gaps = 6/328 (1%)

Query: 1475 EVNLDDEQPDMDNGISQNQGHTDEA--KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1532
            +V LD   P +      +    DE   +   +K ++  ++ EK++ E+E+   EE L++ 
Sbjct: 1542 DVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRIEEALMDP 1601

Query: 1533 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1591
               P + ++F+RLV SSP+SS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1602 GRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1661

Query: 1592 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1651
            N+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1662 NVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNR 1719

Query: 1652 MIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710
            M+K+F+    VW++    LL++ + E    V+QRAL  LP+ +H+  I++ A LEF+ G 
Sbjct: 1720 MLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGD 1779

Query: 1711 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1770
            A+R R++FE  LS YPKRTD+WS+Y+D  I+ G     R +FER I LSL PK+MKF FK
Sbjct: 1780 AERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFK 1839

Query: 1771 KYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            +YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1840 RYLDYEKQHGSEKDVQAVKAKALEYVEA 1867



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1357
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N 
Sbjct: 509  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 563

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            ++ GL    ELS ++V + E+++  G+ VKV +L  +  K R+ L  +
Sbjct: 564  DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 611



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 131/614 (21%), Positives = 237/614 (38%), Gaps = 122/614 (19%)

Query: 775  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 834
            L+  T++ G ++   +  +     LVD+      +   R     ++AQ+  R++     L
Sbjct: 179  LSAETLKPGMLLTGTVSSLEDHGYLVDIG-----VSGARAFLPLQKAQEYIRQKNKGAKL 233

Query: 835  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 894
             V Q +N ++E VK +  V++L     SIG++ VS                   A +   
Sbjct: 234  KVGQYLNCLIEEVKGSRGVVTL-----SIGHSEVS-------------------AAIATE 269

Query: 895  PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 954
              S T   LL                         G +V+A++ ++ PL L LKF   F 
Sbjct: 270  EQSWTLNSLL------------------------PGLVVKAQVQKVTPLGLTLKFLSFFS 305

Query: 955  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1014
            G +    ++  K+      FSN    Q V A ++         ++    LS++P  L   
Sbjct: 306  GLVDFMHLDPKKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPG 353

Query: 1015 EIGSKLLFEECDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQE 1071
               ++LL ++    +    V G+       + L   T++   +  L      ++P     
Sbjct: 354  RPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA--- 410

Query: 1072 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1131
                F  G      ++  ++  +L  L LR     I +      +D     I  G +V G
Sbjct: 411  ----FKPGNTHKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKG 458

Query: 1132 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1191
            ++  I     G+VV++G  + G V    L +I + +P   Y  G        DE   VKC
Sbjct: 459  KVLTIKPH--GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVG--------DE---VKC 505

Query: 1192 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1251
            +VL      +      ++L+ +L              V++    +   +D  P +   G+
Sbjct: 506  RVLLCDPKAKKLM---MTLKKTL--------------VESKLPAITCYDDAKPGLQTHGF 548

Query: 1252 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1311
            +  V   GC +     +   V    LS  YV  PE  F  G++V   VL+ EP  +R+ +
Sbjct: 549  ILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLL 608

Query: 1312 TLK-TSDSRT----ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            + +  SD +      SQ +   +S   + D+ +  +++ +  GL + +   N+ G    +
Sbjct: 609  SFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKV--LEKTKD-GLKVAVLPHNIPGFLPTA 665

Query: 1367 ELSEDHVDNIETIY 1380
             LS DHV N   +Y
Sbjct: 666  HLS-DHVTNGPLLY 678



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 169/402 (42%), Gaps = 69/402 (17%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 453  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1045
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 509  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 557

Query: 1046 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--NKEKKLL--RLV 1099
            ++     ++  +    L + Y P      +  F+ G+ V   VL+   +KE+ LL  RL+
Sbjct: 558  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613

Query: 1100 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS--KILSGV-GGLVVQIGPH-LYGRV 1155
              P Q+G             Q+   +  +  G+++  K+L     GL V + PH + G +
Sbjct: 614  SDPKQEG-----------EGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFL 662

Query: 1156 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1215
                L +   + PL       +  L   D    V C  L +S   R     + +L S+++
Sbjct: 663  PTAHLSDHVTNGPL------LYHWLQTGDTLHRVLC--LSVSEE-RVLLCRKPALVSAVE 713

Query: 1216 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1275
            G                G++ +   ++ P M++ G+VKN+   G F+     L      +
Sbjct: 714  G----------------GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKA 757

Query: 1276 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
             LSD +V S    F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 758  ILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799



 Score = 45.1 bits (105), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             + S +H G ++IG +K ++ YG+F+    + L GL   + LS+  V +    +  G+ V
Sbjct: 719  KSFSEIHPGMLLIGFVKNIKDYGVFVQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTV 777

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 778  VAKVTNVDEEKQRMLLSLRLS 798


>gi|296472696|tpg|DAA14811.1| TPA: programmed cell death 11 [Bos taurus]
          Length = 1874

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 395/1392 (28%), Positives = 649/1392 (46%), Gaps = 159/1392 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +L I LP GL+G  +  +  D   +  NE  A E+ L     LP +F
Sbjct: 84   MRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQDLVGLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  LD  K    K+ + LSL    + + LS ET++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLDTTKG--SKKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +  +R VV LS     
Sbjct: 202  YLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGVVTLSIGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L FL++F+G VD  HL      T 
Sbjct: 262  VSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     ++V A +L V P +RAV L+L P  L    P + +   ++G + D   V   
Sbjct: 322  FSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    +      T AY   + ++  +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D+KPG +VKGKV+ +   G +V+    ++ L P  H+++  I  P
Sbjct: 434  SLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ VG E+  RVL    K+K++ +T KKTLV+SKL  ++ Y +A   L THG+I +++
Sbjct: 494  EKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  PR EL  +   +P S+++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613

Query: 523  -KPTRVSEDDLVKLGSLVSG--VVDV----VTPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
              P +  E    K    VS   +VDV     T + + V V+      G +PT HL+DH+ 
Sbjct: 614  SDPKQEGEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIP-GFLPTAHLSDHVT 672

Query: 576  HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHG 633
            +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P   S IHP  ++ G
Sbjct: 673  NGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIHPGMLLIG 732

Query: 634  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            +V NI + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R+ 
Sbjct: 733  FVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRML 792

Query: 694  LSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVH 749
            LSL+ S C+  D +          LEE+  +     +  S L + +     G  ++ +V 
Sbjct: 793  LSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMALDLEVQ 852

Query: 750  ESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            E  + G V+ F E   V G +   + +  AG  +E G   +A IL+V   +  V +SL  
Sbjct: 853  EVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKLEVHVSLCH 910

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              +        NR+A+K K+  +          + AIV+ ++E++ V SL E  H   ++
Sbjct: 911  DLV--------NRKAKKLKKGSD----------LQAIVQHLEESFAVASLVETGHLAAFS 952

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK--- 922
              S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R     
Sbjct: 953  LTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVTG--LLLAIEGPAAKRTMRQTRKDSET 1010

Query: 923  ----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
                            KK +  +G +V   +  IKP  + +    G  G IH + + DD 
Sbjct: 1011 VDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDD- 1069

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML--- 1011
              V  +  +  K+G+ VTAR+I      DMK   FL            ELS++PS L   
Sbjct: 1070 VPVGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSELKED 1126

Query: 1012 ---TVSEIGSKLLFEECDVSIGQRVTGYVYK--VDNEWALLTISRHLKAQLFILDSAYEP 1066
               T++      L +      GQ VT ++ K  +  +W  + I+   + ++ +L ++   
Sbjct: 1127 GHTTLNTHSVSPLEKIKQYQPGQTVTCFLKKSIMVKKWLEVEIAPDFRGRIPLLLTSLSF 1186

Query: 1067 SELQEFQRRFHIGKAVTGHVLSINKEKK--LLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
              L+   ++F IG+A+   V+   +  K  L   ++ P +                  + 
Sbjct: 1187 KVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHK------------------LK 1228

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            +G++  GR+ K+ +   GL V      +GRV    +    VSD    Y E     L  + 
Sbjct: 1229 KGEVAMGRVVKV-TPKEGLTVSFP---FGRVGRVSM--FHVSD---SYSETH---LEDFV 1276

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
              Q V+C VL  +  V     + LSLRS     S TN    S   D     +  IEDL  
Sbjct: 1277 PQQVVRCYVLSAATPV-----LTLSLRS-----SRTNPETKSKITDP---EINSIEDLEE 1323

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVAGRVLS 1301
              +++G+VK+V   G  + L   +       ++S  +    +P ++  P GKL+  +VL 
Sbjct: 1324 GQLLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLR 1383

Query: 1302 VEPLSKRVEVTL 1313
            +      VE++L
Sbjct: 1384 LNHQESLVELSL 1395



 Score =  260 bits (664), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 146/328 (44%), Positives = 220/328 (67%), Gaps = 6/328 (1%)

Query: 1475 EVNLDDEQPDMDNGISQNQGHTDEA--KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1532
            +V LD   P +      +    DE   +   +K ++  ++ EK++ E+E+   EE L++ 
Sbjct: 1542 DVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRIEEALMDP 1601

Query: 1533 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1591
               P + ++F+RLV SSP+SS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1602 GRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1661

Query: 1592 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1651
            N+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1662 NVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNR 1719

Query: 1652 MIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710
            M+K+F+    VW++    LL++ + E    V+QRAL  LP+ +H+  I++ A LEF+ G 
Sbjct: 1720 MLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGD 1779

Query: 1711 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1770
            A+R R++FE  LS YPKRTD+WS+Y+D  I+ G     R +FER I LSL PK+MKF FK
Sbjct: 1780 AERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFK 1839

Query: 1771 KYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            +YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1840 RYLDYEKQHGSEKDVQAVKAKALEYVEA 1867



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1357
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N 
Sbjct: 509  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 563

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            ++ GL    ELS ++V + E+++  G+ VKV +L  +  K R+ L  +
Sbjct: 564  DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 611



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 129/611 (21%), Positives = 232/611 (37%), Gaps = 116/611 (18%)

Query: 775  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 834
            L+  T++ G ++   +  +     LVD+      +   R     ++AQ+  R++     L
Sbjct: 179  LSAETLKPGMLLTGTVSSLEDHGYLVDIG-----VSGARAFLPLQKAQEYIRQKNKGAKL 233

Query: 835  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 894
             V Q +N ++E VK +  V++L     SIG++ VS                   A +   
Sbjct: 234  KVGQYLNCLIEEVKGSRGVVTL-----SIGHSEVS-------------------AAIATE 269

Query: 895  PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 954
              S T   LL                         G +V+A++ ++ PL L LKF   F 
Sbjct: 270  EQSWTLNSLL------------------------PGLVVKAQVQKVTPLGLTLKFLSFFS 305

Query: 955  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1014
            G +    ++  K+      FSN    Q V A ++         ++    LS++P  L   
Sbjct: 306  GLVDFMHLDPKKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPG 353

Query: 1015 EIGSKLLFEECDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQE 1071
               ++LL ++    +    V G+       + L   T++   +  L      ++P     
Sbjct: 354  RPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA--- 410

Query: 1072 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1131
                F  G      ++  ++  +L  L LR     I +      +D     I  G +V G
Sbjct: 411  ----FKPGNTHKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKG 458

Query: 1132 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1191
            ++  I     G+VV++G  + G V    L +I + +P   Y  G        DE   VKC
Sbjct: 459  KVLTIKPH--GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVG--------DE---VKC 505

Query: 1192 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1251
            +VL      +      ++L+ +L              V++    +   +D  P +   G+
Sbjct: 506  RVLLCDPKAKKLM---MTLKKTL--------------VESKLPAITCYDDAKPGLQTHGF 548

Query: 1252 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1311
            +  V   GC +     +   V    LS  YV  PE  F  G++V   VL+ EP  +R+ +
Sbjct: 549  ILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLL 608

Query: 1312 TLK-TSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1369
            + +  SD +   + +       +  G +V  ++      GL + +   N+ G    + LS
Sbjct: 609  SFRLLSDPKQEGEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPTAHLS 668

Query: 1370 EDHVDNIETIY 1380
             DHV N   +Y
Sbjct: 669  -DHVTNGPLLY 678



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 168/399 (42%), Gaps = 63/399 (15%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 453  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1045
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 509  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 557

Query: 1046 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--NKEKKLL--RLV 1099
            ++     ++  +    L + Y P      +  F+ G+ V   VL+   +KE+ LL  RL+
Sbjct: 558  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613

Query: 1100 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFT 1158
              P Q+G      +  +   +  +  G +V  ++  +     GL V + PH + G +   
Sbjct: 614  SDPKQEG------EGQSQKKKKAVSAGQLVDVKV--LEKTKDGLKVAVLPHNIPGFLPTA 665

Query: 1159 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1218
             L +   + PL       +  L   D    V C  L +S   R     + +L S+++G  
Sbjct: 666  HLSDHVTNGPL------LYHWLQTGDTLHRVLC--LSVSEE-RVLLCRKPALVSAVEG-- 714

Query: 1219 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1278
                          G++ +   ++ P M++ G+VKN+   G F+     L      + LS
Sbjct: 715  --------------GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILS 760

Query: 1279 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
            D +V S    F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 761  DKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             + S +H G ++IG +K ++ YG+F+    + L GL   + LS+  V +    +  G+ V
Sbjct: 719  KSFSEIHPGMLLIGFVKNIKDYGVFVQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTV 777

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 778  VAKVTNVDEEKQRMLLSLRLS 798


>gi|84040294|gb|AAI11041.1| PDCD11 protein [Homo sapiens]
          Length = 1444

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 381/1398 (27%), Positives = 645/1398 (46%), Gaps = 161/1398 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     G  ++ 
Sbjct: 793  MLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDL 851

Query: 747  KVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL 
Sbjct: 852  VVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLH 911

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
               +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   +
Sbjct: 912  QDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAF 953

Query: 866  ASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-- 922
            +  S  N T +F  ++   GQ V  T+       T   L +   A   T   + K ++  
Sbjct: 954  SLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETV 1013

Query: 923  ---------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
                           KK +  +G +V   +  IKP  + +    G  G IH + + DD  
Sbjct: 1014 DEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVP 1073

Query: 968  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML--- 1011
                   +  K+G+TVTAR+I      DM K+F +             ELS++PS L   
Sbjct: 1074 EGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSELEDG 1128

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1129 HTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1188

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIHEG 1126
             L+   ++F +G+A+   V+  +  K LL L L  P +                  + EG
Sbjct: 1189 VLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK------------------LEEG 1230

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            ++  GR+ K+    G         L     F ++  + +      Y E    PL  +   
Sbjct: 1231 EVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPLEDFVPQ 1278

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+D+    
Sbjct: 1279 KVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQ 1325

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVL 1300
            +++GYV ++   G F  L   +      S++S     SP K+       P GKL+  RVL
Sbjct: 1326 LLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQ---HSPSKKALYNKHLPEGKLLTARVL 1382

Query: 1301 SVEPLSKRVEVTLKTSDS 1318
             +      VE++    D+
Sbjct: 1383 RLNHQKNLVELSFLPGDT 1400



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 150/337 (44%), Gaps = 57/337 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVL 461

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1314 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 161/730 (22%), Positives = 276/730 (37%), Gaps = 122/730 (16%)

Query: 775  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 834
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 835  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 891
             V Q +N IVE VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQV 288

Query: 892  MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 942
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVHLSL 345

Query: 943  ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 966
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 967  SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1024
                 N+F+   FK G T   RII  S   +     L  LS++ S++             
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQ------YLRY 447

Query: 1025 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1084
             D+  G  V G V  + +   L+ +   ++  +  +  A     ++  ++++HIG  V  
Sbjct: 448  HDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLA--DILMKNPEKKYHIGDEVKC 505

Query: 1085 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1144
             VL  + E K L + L+          +    D        G I+  R+        G +
Sbjct: 506  RVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFII--RVKDY-----GCI 558

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V+   ++ G V   EL    + DP   +          Y  GQ VK  VL          
Sbjct: 559  VKFYNNVQGLVPKHELSTEYIPDPERVF----------YT-GQVVKVVVL---------- 597

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-M 1263
            + E S    L  +S   SSD     +  G   +K + ++   +V   V   T  G  + +
Sbjct: 598  NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAV 655

Query: 1264 LSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            L   + A +  S+LSD     P        G ++  RVL +     RV +  K +   T 
Sbjct: 656  LPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLCRKPALVSTV 714

Query: 1322 SQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
               +   N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +    +
Sbjct: 715  EGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHF 773

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1440
              G+ V  K+  VD+EK+R+ L ++ S       +L ++S    ++ +EE+    RS + 
Sbjct: 774  VEGQTVAAKVTNVDEEKQRMLLSLRLS--DCGLGDLAITSLLLLNQCLEELQGV-RSLMS 830

Query: 1441 ENSSVAVQDM 1450
               SV +Q +
Sbjct: 831  NRDSVLIQTL 840



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 118/246 (47%), Gaps = 35/246 (14%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKTL-LCLSLTGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1248

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V + ++SD Y E+P ++F   K+V   +LS       + ++L++S +   +
Sbjct: 1249 SFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPET 1306

Query: 1323 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
            +S     EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  + +
Sbjct: 1307 KSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPSKK 1364

Query: 1378 TIYRA----GEKVKVKILKVDKEKRRISLGMKSSYFKNDA---DNL------QMSSEEES 1424
             +Y      G+ +  ++L+++ +K  + L    S+   D    D L      Q++ +EE 
Sbjct: 1365 ALYNKHLPEGKLLTARVLRLNHQKNLVEL----SFLPGDTGKPDVLSASLEGQLTKQEER 1420

Query: 1425 DEAIEE 1430
                EE
Sbjct: 1421 KTEAEE 1426


>gi|402881399|ref|XP_003904261.1| PREDICTED: protein RRP5 homolog [Papio anubis]
          Length = 1871

 Score =  415 bits (1067), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 386/1397 (27%), Positives = 652/1397 (46%), Gaps = 159/1397 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGMVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGTVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  ++ +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLNHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIGSVIEGK 747
            + LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G  ++  
Sbjct: 793  MLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDLV 852

Query: 748  VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL  
Sbjct: 853  VQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLHQ 912

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   ++
Sbjct: 913  DLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAFS 954

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK--- 922
              S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R     
Sbjct: 955  LTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPTRKDSET 1012

Query: 923  ----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
                            KK +  +G +V   +  IKP  + +    G  G IH + + DD 
Sbjct: 1013 VDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDV 1072

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML--- 1011
               +    +  K+G+TVTAR+I      DMK   FL            ELS++PS L   
Sbjct: 1073 PEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRPSELEDG 1128

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1129 HTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1188

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
             L+   ++F +G+A+   V+  +  K  L L L             I    ++    EG+
Sbjct: 1189 VLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE----EGE 1231

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            +  GR+ K+     GL V      +G++    +    VSD    Y E    PL  +   +
Sbjct: 1232 VAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI--FHVSD---SYSE---TPLEDFVPQK 1279

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D+    +
Sbjct: 1280 VVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQL 1326

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVLS 1301
            ++GYV ++   G F  L   +   V L+  S     SP K+       P GKL+  RVL 
Sbjct: 1327 LRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKLLTARVLR 1383

Query: 1302 VEPLSKRVEVTLKTSDS 1318
            +      VE++    D+
Sbjct: 1384 LNHQKNLVELSFLPGDT 1400



 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1554
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQATKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1674
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1739

Query: 1675 Q-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
            Q E    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAEASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1794 EYVES 1798
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 152/337 (45%), Gaps = 57/337 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++RL LRP           +S  N+ T + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGTVLDDVPVQGFFKKAGATF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLNHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 461

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1314 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 189/469 (40%), Gaps = 58/469 (12%)

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1002
             RLK G+  + R++   ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARLN--HLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 432  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 485

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 486  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 543

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 544  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 586

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            Y  GQ VK  VL          + E S    L  +S   SSD     +  G   +K + +
Sbjct: 587  YT-GQVVKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAI 633

Query: 1243 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1299
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 634  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 692

Query: 1300 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            L +      V +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 693  LCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 751

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 752  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 41.2 bits (95), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1323 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPS 1362

Query: 1376 IETIYRA----GEKVKVKILKVDKEKRRISL 1402
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|390473341|ref|XP_002756467.2| PREDICTED: protein RRP5 homolog [Callithrix jacchus]
          Length = 1880

 Score =  415 bits (1067), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 386/1400 (27%), Positives = 658/1400 (47%), Gaps = 165/1400 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 95   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVMQEQPLKDLFHLPELF 154

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L   ++  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 155  SPGMLVRCVVSSLSITER--GKKSVKLSLNPKNVNRVLSAEVLKPGMLLTGTVSSLEDHG 212

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +  +  VV+LS     
Sbjct: 213  YLVDIGVDGTRAFLPLLKAQEYIQQKNKGAKLKVGQYLNCIIEEVKGSGGVVHLSIGHLE 272

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 273  VSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 332

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L++ P  L    P S +    +G +     V   
Sbjct: 333  FSN-----QAVKACILCVHPRTRVVRLSMRPIFLQPGRPLSRLSCQHLGAVLTDVPVQGF 387

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 388  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 444

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D+KPG VVKG V+ +  +G +V+    ++ L P  H+++  +  P
Sbjct: 445  SLRTSIIEAQYLRYHDIKPGAVVKGTVLTIKPYGMLVKVGEQMRGLVPHMHLADILMKNP 504

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTLV+SKL  ++ +A+A   L THG+I +++
Sbjct: 505  EKKYHIGDEVKCRVLLCDPEAKKLVMTLKKTLVESKLPAITCFADAKPGLQTHGFIIRVK 564

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FY+ VQG  P+ EL  +   +P  +++ GQVVK  +++S P+  R+ LSF + 
Sbjct: 565  DYGCIVKFYSDVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNSEPSKERMLLSFKLL 624

Query: 523  ---KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
               +P +        ++  + +G LV   V   T + + V V+    ++  +PT HL+DH
Sbjct: 625  RDPEPKKEPAGHNQKKEKAINVGQLVDVKVLEKTKDGLEVAVLPHN-TRAFLPTSHLSDH 683

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 684  VTNGPLLHHWLQAGDTLHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 743

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S+ +  GQ+V + + +V+ E  R
Sbjct: 744  VGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSEHFVEGQTVVAKVTNVDEEKQR 803

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQSSKHNGSEL------KWVEGFIIGSV 743
            + LSL+ S C   D +      L +  E++  ++S   N   +      +   G  +  V
Sbjct: 804  MLLSLRLSDCGLGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDLV 863

Query: 744  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL--DVAKAERLVD 801
            ++ KV E  D  VV S     ++    + +   G  VESG   +  IL  D+ K E LV 
Sbjct: 864  VQ-KVLE--DGSVVFSGGPVPNLVLRASRYHRGGQEVESGQKKKVVILNVDLLKLEVLVS 920

Query: 802  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 861
            L    V          NR+A+K ++  E       HQ   A+V+ +++++ + SL E  H
Sbjct: 921  LHQDLV----------NRKAKKLRKGSE-------HQ---AVVQHLEKSFAIASLVETGH 960

Query: 862  SIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST----------AGRLLLLLKAI 910
             + ++  S  N T +F  ++   GQ V  T+       T          A R + L +  
Sbjct: 961  LVAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRLTRKD 1020

Query: 911  SET-------ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 963
            SET       + + +    KK ++ +G +V   +  IKP  + +    G  G IH + + 
Sbjct: 1021 SETVDEDEEVDPALTVGTIKKHTFSIGDMVTGTVKSIKPTHVVVTLKDGIIGCIHASHIL 1080

Query: 964  DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML 1011
            DD         +  K+G+TVTAR+I      DMK   FL            ELS++PS L
Sbjct: 1081 DDVPEGTSPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTVPELSVRPSEL 1136

Query: 1012 ----TVSEIGSKLLFEECD-VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAY 1064
                T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++ 
Sbjct: 1137 EDGHTALNTHSVSPMEKIKRYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSL 1196

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
                L+   ++F +G+A+   V+  +  K  LRL L             I    ++    
Sbjct: 1197 SFKVLKHPDKKFRVGQALRATVVGPDSSKAFLRLSL-------------IGPHKLE---- 1239

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG++  GR+ K+     GL +      +G++    L    VSD    Y E    PL  + 
Sbjct: 1240 EGEVAMGRVVKVTPN-EGLTISFP---FGKIGTVSL--FHVSD---SYSE---TPLEDFV 1287

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
              + V+C +L     V     + LSLR      SS  + +  + V+ P   +  I+D+  
Sbjct: 1288 PQKVVRCYILSTEDNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKE 1334

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGR 1298
              +++GYV+++   G F  L   +   V L+        SP K+       P GKL+  R
Sbjct: 1335 GQLLRGYVRSIQPHGVFFGLGPSV---VGLARYPHVSQHSPSKKALYNKHLPKGKLLTAR 1391

Query: 1299 VLSVEPLSKRVEVTLKTSDS 1318
            VL +      VE++    D+
Sbjct: 1392 VLRLNHQKNLVELSFLPGDT 1411



 Score =  291 bits (744), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 147/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1503 DEKNNRHAKKKEKEERE-------QEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFV 1554
            DEK ++  KKK K+ERE       +E+   EE L++    P + D+F+RLV SSPNSS +
Sbjct: 1572 DEKPHQATKKKSKKERELQKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1631

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1632 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1689

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1674
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1690 VFERAVQYNEPLKVFLHLADIYAKSEKFQEASELYNRMLKRFRQEKAVWIKYGAFLLRRS 1749

Query: 1675 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G  +R +++FE  L+ YPKRTD+WS
Sbjct: 1750 QAGASHCVLQRALECLPSTEHVDVIAKFAQLEFQLGDPERAKAIFENTLTTYPKRTDVWS 1809

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +Y+D  I+ G    +R +FER I LSL PKKMKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1810 VYIDMTIKHGSQKDVRDIFERVIHLSLAPKKMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1869

Query: 1794 EYVES 1798
            EYVE+
Sbjct: 1870 EYVEA 1874



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 149/334 (44%), Gaps = 55/334 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++RL +RP           +S  ++   + +  + G     G   
Sbjct: 336  QAVKACILCVHPRTRVVRLSMRPIFLQPGRPLSRLSCQHLGAVLTDVPVQGFFKKAGATF 395

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 396  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 432

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 433  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIKPGAVVKGTVL 472

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             +   G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 473  TIKPYGMLVKVGEQMRGLVPHMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLVMTL 532

Query: 1314 KTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1371
            K +  +S+  +   I   ++   G    G I RV+ YG  +    +++ GL    ELS +
Sbjct: 533  KKTLVESKLPA---ITCFADAKPGLQTHGFIIRVKDYGCIVKF-YSDVQGLVPKHELSTE 588

Query: 1372 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            ++ + E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 589  YIPDPERVFYTGQVVKVAVLNSEPSKERMLLSFK 622



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
            N S +H G +++G +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V 
Sbjct: 733  NFSEIHPGMLLVGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSEHFVEGQTVV 791

Query: 1388 VKILKVDKEKRRISLGMKSS 1407
             K+  VD+EK+R+ L ++ S
Sbjct: 792  AKVTNVDEEKQRMLLSLRLS 811



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 105/209 (50%), Gaps = 22/209 (10%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +LR+++ G    +SS     +   G H  K+E+     +  G V  VT ++G  I
Sbjct: 1208 FRVGQALRATVVG---PDSSKAFLRLSLIGPH--KLEE---GEVAMGRVVKVTPNEGLTI 1259

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V L ++SD Y E+P ++F   K+V   +LS E     + ++L++S +   +
Sbjct: 1260 SFPFGKIGTVSLFHVSDSYSETPLEDFVPQKVVRCYILSTE--DNVLTLSLRSSRTNPET 1317

Query: 1323 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
            +S     EIN++ ++  G ++ G ++ ++ +G+F  +   ++VGL     +S+ H  + +
Sbjct: 1318 KSKVEDPEINSIQDIKEGQLLRGYVRSIQPHGVFFGL-GPSVVGLARYPHVSQ-HSPSKK 1375

Query: 1378 TIYR----AGEKVKVKILKVDKEKRRISL 1402
             +Y      G+ +  ++L+++ +K  + L
Sbjct: 1376 ALYNKHLPKGKLLTARVLRLNHQKNLVEL 1404


>gi|355562752|gb|EHH19346.1| hypothetical protein EGK_20032 [Macaca mulatta]
          Length = 1871

 Score =  415 bits (1067), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 383/1394 (27%), Positives = 649/1394 (46%), Gaps = 153/1394 (10%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIIEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIGSVIEGK 747
            + LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G  ++  
Sbjct: 793  MLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDLV 852

Query: 748  VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL  
Sbjct: 853  VQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLHQ 912

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   ++
Sbjct: 913  DLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAFS 954

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK--- 922
              S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R     
Sbjct: 955  LTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPTRKDSET 1012

Query: 923  ----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
                            KK +  +G +V   +  IKP  + +    G  G IH + + DD 
Sbjct: 1013 VDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDV 1072

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML--- 1011
               +    +  K+G+TVTAR+I      DMK   FL            ELS++PS L   
Sbjct: 1073 PEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRPSELEDG 1128

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1129 HTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1188

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
             L+   ++F +G+A+   V+  +  K  L L L             I    ++    EG+
Sbjct: 1189 VLKHPDKKFRVGQALRATVIGPDSSKAFLCLSL-------------IGPHKLE----EGE 1231

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            +  GR+ K+     GL V      +G++    +    VSD    Y E    PL  +   +
Sbjct: 1232 VAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI--FHVSD---SYSE---TPLEDFVPQK 1279

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D+    +
Sbjct: 1280 VVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQL 1326

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEP 1304
            ++GYV ++   G F  L   +      S++S           K  P GKL+  RVL +  
Sbjct: 1327 LRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHLPEGKLLTARVLRLNH 1386

Query: 1305 LSKRVEVTLKTSDS 1318
                VE++    D+
Sbjct: 1387 QKNLVELSFLPGDT 1400



 Score =  293 bits (750), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1554
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1674
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1739

Query: 1675 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1794 EYVES 1798
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 57/337 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 461

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1314 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 189/469 (40%), Gaps = 58/469 (12%)

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1002
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 432  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 485

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 486  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 543

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 544  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 586

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            Y  GQ VK  VL          + E S    L  +S   SSD     +  G   +K + +
Sbjct: 587  YT-GQVVKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAI 633

Query: 1243 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1299
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 634  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 692

Query: 1300 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            L +      V +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 693  LCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 751

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 752  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 41.6 bits (96), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVIGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1323 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1362

Query: 1376 IETIYRA----GEKVKVKILKVDKEKRRISL 1402
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|29436556|gb|AAH49838.1| PDCD11 protein, partial [Homo sapiens]
          Length = 1436

 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 381/1398 (27%), Positives = 645/1398 (46%), Gaps = 161/1398 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     G  ++ 
Sbjct: 793  MLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDL 851

Query: 747  KVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL 
Sbjct: 852  VVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLH 911

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
               +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   +
Sbjct: 912  QDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAF 953

Query: 866  ASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-- 922
            +  S  N T +F  ++   GQ V  T+       T   L +   A   T   + K ++  
Sbjct: 954  SLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETV 1013

Query: 923  ---------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
                           KK +  +G +V   +  IKP  + +    G  G IH + + DD  
Sbjct: 1014 DEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVP 1073

Query: 968  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML--- 1011
                   +  K+G+TVTAR+I      DM K+F +             ELS++PS L   
Sbjct: 1074 EGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSELEDG 1128

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1129 HTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1188

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIHEG 1126
             L+   ++F +G+A+   V+  +  K LL L L  P +                  + EG
Sbjct: 1189 VLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK------------------LEEG 1230

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            ++  GR+ K+    G         L     F ++  + +      Y E    PL  +   
Sbjct: 1231 EVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPLEDFVPQ 1278

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+D+    
Sbjct: 1279 KVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQ 1325

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVL 1300
            +++GYV ++   G F  L   +      S++S     SP K+       P GKL+  RVL
Sbjct: 1326 LLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQ---HSPSKKALYNKHLPEGKLLTARVL 1382

Query: 1301 SVEPLSKRVEVTLKTSDS 1318
             +      VE++    D+
Sbjct: 1383 RLNHQKNLVELSFLPGDT 1400



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 150/337 (44%), Gaps = 57/337 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVL 461

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1314 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 164/735 (22%), Positives = 276/735 (37%), Gaps = 132/735 (17%)

Query: 775  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 834
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 835  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 891
             V Q +N IVE VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQV 288

Query: 892  MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 942
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVHLSL 345

Query: 943  ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 966
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 967  SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1024
                 N+F+   FK G T   RII  S   +     L  LS++ S++             
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQ------YLRY 447

Query: 1025 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRRFHIG 1079
             D+  G  V G V  + +   L+ +   ++  +        P  L +      ++++HIG
Sbjct: 448  HDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLV-------PPMHLADILMKNPEKKYHIG 500

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1139
              V   VL  + E K L + L+          +    D        G I+  R+      
Sbjct: 501  DEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFII--RVKDY--- 555

Query: 1140 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1199
              G +V+   ++ G V   EL    + DP     E  F     Y  GQ VK  VL     
Sbjct: 556  --GCIVKFYNNVQGLVPKHELSTEYIPDP-----ERVF-----YT-GQVVKVVVL----- 597

Query: 1200 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1259
                 + E S    L  +S   SSD     +  G   +K + ++   +V   V   T  G
Sbjct: 598  -----NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDG 650

Query: 1260 CFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
              + +L   + A +  S+LSD     P        G ++  RVL +     RV +  K +
Sbjct: 651  LEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLCRKPA 709

Query: 1317 DSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
               T    +   N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +
Sbjct: 710  LVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTS 768

Query: 1376 IETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN 1435
                +  G+ V  K+  VD+EK+R+ L ++ S       +L ++S    ++ +EE+    
Sbjct: 769  TSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS--DCGLGDLAITSLLLLNQCLEELQGV- 825

Query: 1436 RSSLLENSSVAVQDM 1450
            RS +    SV +Q +
Sbjct: 826  RSLMSNRDSVLIQTL 840



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 118/246 (47%), Gaps = 35/246 (14%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKTL-LCLSLTGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1248

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V + ++SD Y E+P ++F   K+V   +LS       + ++L++S +   +
Sbjct: 1249 SFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPET 1306

Query: 1323 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
            +S     EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  + +
Sbjct: 1307 KSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPSKK 1364

Query: 1378 TIYRA----GEKVKVKILKVDKEKRRISLGMKSSYFKNDA---DNL------QMSSEEES 1424
             +Y      G+ +  ++L+++ +K  + L    S+   D    D L      Q++ +EE 
Sbjct: 1365 ALYNKHLPEGKLLTARVLRLNHQKNLVEL----SFLPGDTGKPDVLSASLEGQLTKQEER 1420

Query: 1425 DEAIEE 1430
                EE
Sbjct: 1421 KTEAEE 1426


>gi|440640711|gb|ELR10630.1| hypothetical protein GMDG_04899 [Geomyces destructans 20631-21]
          Length = 1792

 Score =  415 bits (1066), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 358/1331 (26%), Positives = 635/1331 (47%), Gaps = 164/1331 (12%)

Query: 535  LGSLVSGVVDVVTPNAVVV---YV-IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 590
            +G +V G VD +  N   +   +V +A G + G +P  H+AD   H    K   K G   
Sbjct: 555  IGEVVKGKVDKLFINEAGIGGLFVKLADGIT-GLVPEMHMADVKFHHPEKK--FKQGLSV 611

Query: 591  D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
              ++L  D       L+ K +L+NS   +      I P S   G + +I+  G  V+F G
Sbjct: 612  TARVLSTDLSKRQFRLTLKKALVNSENPVFKSYEDIEPGSQSPGTIISILPGGAVVQFYG 671

Query: 650  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
             + GF P S+  +    D S+ ++VGQ V  ++L+V+    R+T+S K            
Sbjct: 672  TVRGFLPVSEMSESYIQDPSQHFHVGQVVNVHVLNVDPAAARLTVSCKDPAAFGLSQQSS 731

Query: 710  QEHFLLEEKIAMLQSSKHNGS-----ELKWVEGFI-IGSVIEGKVHESNDFGVVVSFEEH 763
             +   + E ++   + K N       EL  +   + +G + +G   E+ +F         
Sbjct: 732  LKKLRIGEIVSATVTEKSNDDISVELELSGLRAILPVGHLTDGS--EAKNFS-------- 781

Query: 764  SDVYGFITHHQLAGATVESGSVIQA-AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 822
                        A   +  G  +Q  A++D  +  RL+ L+ K+  +         + A 
Sbjct: 782  ------------AFKKIRVGQTLQNLAVIDKVEKNRLITLTNKSNLV---------KAAN 820

Query: 823  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 882
            ++   RE + D+  ++ V+  V+ +    + +        +   S      Q  P     
Sbjct: 821  ERTLLREFA-DVKENKIVHGFVKNITPTAVFVQFGGGVTGLLPKSKLQDEAQTLPDFGLR 879

Query: 883  NGQSVIATVMALPSSSTAGRLLLLLKAISETETS---------SSKRA--------KKKS 925
              QS+ A V+++  S    R LL +K I+ +  S          S++A            
Sbjct: 880  RLQSLTAKVLSVDQSEK--RFLLSVKDINISVPSVDGELVYHGESQKAINPVDESITAAE 937

Query: 926  SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTV 983
             + +G +  A I  +K  ++ ++      GRI ++EV +    + +  +    F   QT+
Sbjct: 938  DFTLGRVTMARIASVKETQINVQLANNIQGRIDVSEVFESWEEIKDRKHPLKQFSAKQTI 997

Query: 984  TARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVT 1034
              R++   +  + +         K+ ++ELS K +  T+      L   +  V +G    
Sbjct: 998  PVRVLGIHDAKNHRFLPITHTAGKTAVFELSAKLTK-TIESAPEALTLNK--VKVGSSWI 1054

Query: 1035 GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1094
             +V  V ++   + IS +++ ++  LD + + S L   + +F +G A+   V  I+    
Sbjct: 1055 AFVNNVRDDCLWVNISPNVRGRIGALDISDDVSLLNNLESKFPVGSAIKVSVTGIDVANN 1114

Query: 1095 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGR 1154
             L L  R  +   S  +      +M        +V  R++K+      ++VQ+   + G 
Sbjct: 1115 RLDLSGRSARGSSSALSFQDLKKDM--------VVPARVTKVTER--QIMVQLSDKVSGP 1164

Query: 1155 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI---SRTVRGTFHVELSLR 1211
            V+ T+L +          D    +P + Y +   V+  + ++   ++ +R T      L 
Sbjct: 1165 VNLTDLTD----------DFSDANP-TIYSKNDIVRVCITDVDVPNKRIRLTTRPSRVLN 1213

Query: 1212 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1271
            SSL    +  SS               +  L  N +V+G+V NV   G F+ L   + A 
Sbjct: 1214 SSLPVKDAEVSS---------------VAQLKVNDVVRGFVNNVAENGIFVSLGGNVTAY 1258

Query: 1272 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1331
              +S+LSD Y++  +  F + +LV G+V++ +P    V+++LK+S       + I+ L++
Sbjct: 1259 TRVSDLSDAYIKEWKPSFQVDQLVKGKVIAADPALNHVQLSLKSSVVDNDYVAPIS-LND 1317

Query: 1332 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1390
            L VG  + G+I++VE +G+FI ++ + N+ GLCH SE++E+ V +++ +Y  G+ VK K+
Sbjct: 1318 LEVGQTITGKIRKVEDFGVFIVVDGSMNVSGLCHRSEMTENRVTDVKKLYSEGDAVKAKV 1377

Query: 1391 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDM 1450
            LKV+ + RR+S G+++SYFK+     Q  S+EE D  I++         +E   +   D 
Sbjct: 1378 LKVELDNRRVSFGLRASYFKD-----QSESDEEMDYGIKDG--------MEGVQLGSDD- 1423

Query: 1451 DMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEA-------KTID 1503
            D +SE+G S  L ++++  ++     + DD  PDM++ + Q  G   EA        T+D
Sbjct: 1424 DADSEEGNSGNLERVDALVAL-----SGDDSDPDMEDALQQPSGLPLEAGGFNWTASTLD 1478

Query: 1504 EKNNR----------HAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSF 1553
            + + +           +  K+K  R+  I+      L+ + P++  +FERL+ S P+SS 
Sbjct: 1479 DADQQIGVDSEEEGLASASKKKARRKPLIKVDRTGELDANGPQSTSDFERLLLSEPDSSQ 1538

Query: 1554 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613
            +WI+YMAF + ++++ KAR +AERA++TIN+REE EK+N+W+A  NLEN YG+  ++   
Sbjct: 1539 LWIEYMAFQVKLSELAKAREVAERAIRTINMREEAEKMNVWIALLNLENAYGS--DDTTE 1596

Query: 1614 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL--L 1671
            +VF+RA +Y D  ++H  L  +Y ++ ++  ADEL   +IKKF      W      L   
Sbjct: 1597 EVFKRACEYNDAFEIHERLTSIYIQSGKHTKADELFQVLIKKFSQYPNAWYNYAHFLHYT 1656

Query: 1672 KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEF--KNGVADRGRSMFEGILSEYPKRT 1729
                +   A++ RA+ SLP H H+    + A LEF   +G  +RGR+ FEG+L+ +PKR 
Sbjct: 1657 LSSPDRAWALLPRAIQSLPSHNHLTLTIKFAALEFHSPHGSPERGRTTFEGVLATFPKRL 1716

Query: 1730 DLWSIYLDQEIRLGDVDLIRGLFER-AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYV 1788
            DLW+  LD EI+ GD  ++R LFER A S  L PK  K  FK++ E+E   G+ +  E V
Sbjct: 1717 DLWNQLLDLEIQQGDEGMVRALFERVARSKDLKPKGAKAWFKRWSEWEGKYGDAKSQEKV 1776

Query: 1789 KQKAMEYVEST 1799
            K KA+E+V +T
Sbjct: 1777 KAKAIEWVRAT 1787



 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 201/748 (26%), Positives = 338/748 (45%), Gaps = 58/748 (7%)

Query: 5   GVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL------------L 49
           G V+++N  D+ + LP  L G   L   +  L   ++  + A +               L
Sbjct: 159 GQVSKINIHDIALALPNNLTGYVPLTSISGKLTERVEMLVAAYDGASDDDSSSIADDIDL 218

Query: 50  PTIFHVGQLVSCIVLQLDDDKK---EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 106
             +F VGQ +   V+  +++     E+GKR+I LSL+      G++ + +    ++ A V
Sbjct: 219 NDLFSVGQYLRAFVVSTNENNASGAEVGKRRIELSLQPQKANSGITAKELAPNSMIMASV 278

Query: 107 KSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLS 163
            S+EDHG I+  GL   +  GF+    +     ++ ++ G ++  ++  +    K+V LS
Sbjct: 279 VSVEDHGIIMDIGLQKSAIGGFMSSKEIGYAIEMNTIQEGAVMLCMITGLSSNGKIVKLS 338

Query: 164 SDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           +D   +  SK  T      ++D  +PG  V   +  I   GV    +     T D+ H  
Sbjct: 339 ADLQKIANSKKPTYLSDAPTVDAFLPGTAVEFLLADITPRGVAGKVMGSIDVTADLIHSG 398

Query: 222 NTFPTTNWKNDYNQHKKVNARILFVDPT--SRAVGLTLNPYLL-----------HNRAPP 268
            +    + +  Y    KV  RI+   P    R +G++L  +++               P 
Sbjct: 399 LSNAGKDLEKKYKVGSKVKGRIICTFPNVEPRKLGISLLDHVMSLSTQQAQKNAQKHDPL 458

Query: 269 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKE 325
             + +  I +++ V +V  G+GL +DI    V+   +V IS VA+ +V  L +    YK 
Sbjct: 459 QILPLSSIIEEATVKKVQPGIGLFVDIGVKGVN--GFVHISRVADSKVETLSESVGPYKV 516

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSFGAI 381
            S  R R++G+  L+G+    L+    E       D+  G VVKGKV    I     G +
Sbjct: 517 DSTHRGRVVGYNSLDGIYLVSLEQRVLEQPFLQIEDLTIGEVVKGKVDKLFINEAGIGGL 576

Query: 382 -VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKS 438
            V+   G+  L P  HM++ +   P KKFK G  +  RVL   +  ++  +T KK LV S
Sbjct: 577 FVKLADGITGLVPEMHMADVKFHHPEKKFKQGLSVTARVLSTDLSKRQFRLTLKKALVNS 636

Query: 439 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
           +  +  SY +      + G I  I   G  V+FY  V+GF P SE+      +PS  +HV
Sbjct: 637 ENPVFKSYEDIEPGSQSPGTIISILPGGAVVQFYGTVRGFLPVSEMSESYIQDPSQHFHV 696

Query: 499 GQVVKCRIMSSIPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY 554
           GQVV   +++  PA+ R+ +S         ++ S    +++G +VS  V   + + + V 
Sbjct: 697 GQVVNVHVLNVDPAAARLTVSCKDPAAFGLSQQSSLKKLRIGEIVSATVTEKSNDDISVE 756

Query: 555 VIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSNLL--LSAKYSL 611
           +   G  +  +P  HL D  E         I+ G     L V+D    N L  L+ K +L
Sbjct: 757 LELSGL-RAILPVGHLTDGSEAKNFSAFKKIRVGQTLQNLAVIDKVEKNRLITLTNKSNL 815

Query: 612 INSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 669
           + +A +  L  + + +  N +VHG+V NI  T  FV+F G +TG  P+SK  D  +    
Sbjct: 816 VKAANERTLLREFADVKENKIVHGFVKNITPTAVFVQFGGGVTGLLPKSKLQDEAQTLPD 875

Query: 670 KTYYVGQSVRSNILDVNSETGRITLSLK 697
                 QS+ + +L V+    R  LS+K
Sbjct: 876 FGLRRLQSLTAKVLSVDQSEKRFLLSVK 903



 Score = 48.9 bits (115), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 18/248 (7%)

Query: 189  MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDP 248
            M+V  RV  + E  +M+      +G V++  L + F   N    Y+++  V   I  VD 
Sbjct: 1139 MVVPARVTKVTERQIMVQLSDKVSGPVNLTDLTDDFSDAN-PTIYSKNDIVRVCITDVDV 1197

Query: 249  TSRAVGLTLNP-YLLHNRAPPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPV 300
             ++ + LT  P  +L++  P    +V  +  Q KV  V RG        G+ + +     
Sbjct: 1198 PNKRIRLTTRPSRVLNSSLPVKDAEVSSVA-QLKVNDVVRGFVNNVAENGIFVSLGG--- 1253

Query: 301  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVF 357
            +  AY  +SD+++  +++ +  ++    V+ +++            LK+S  +       
Sbjct: 1254 NVTAYTRVSDLSDAYIKEWKPSFQVDQLVKGKVIAADPALNHVQLSLKSSVVDNDYVAPI 1313

Query: 358  THSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
            + +D++ G  + GK+  V+ FG  +   G   V  LC    M+E  +    K +  G  +
Sbjct: 1314 SLNDLEVGQTITGKIRKVEDFGVFIVVDGSMNVSGLCHRSEMTENRVTDVKKLYSEGDAV 1373

Query: 416  VFRVLGVK 423
              +VL V+
Sbjct: 1374 KAKVLKVE 1381


>gi|395828464|ref|XP_003787398.1| PREDICTED: protein RRP5 homolog [Otolemur garnettii]
          Length = 1870

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 393/1399 (28%), Positives = 653/1399 (46%), Gaps = 163/1399 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GLRG  +  +  D      NE    E+ L     LP +F
Sbjct: 93   MRILGCVKEVNELELVISLPNGLRGFVQVTEICDAYTKKLNEQVTQEEPLKDLLHLPELF 152

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  +D  ++  GK+ + LSL    + + LS E+++ GM+LT  V S+EDHG
Sbjct: 153  SPGMLVRCVVSSVDTTER--GKKSVKLSLNPKNVNRVLSAESLKPGMLLTGTVSSLEDHG 210

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  V+  +  +  VV L+     
Sbjct: 211  YLVDIGVDGTRAFLPLPKAQEYIRQKNKGAKLKVGQYLNCVIEEVKASGGVVSLAIGHAE 270

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +T + +  +++ L+PG++V  +VQ +  +G+ L+FLT+FTG VD  HL      T 
Sbjct: 271  VSTAITTEEQNWTLNNLLPGLVVKAQVQKVTPHGLTLNFLTFFTGLVDFMHLDPKKAGTY 330

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---SHVKVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P LL    P    S   +G + D   V   
Sbjct: 331  FSN-----QAVRACILCVHPRTRVVRLSLRPILLQPGRPLIRLSCQHLGAVLDDVSVQGF 385

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    +      T AY  +S +++ E       +K G+  + RI+ +  ++ LA  
Sbjct: 386  FNKAGATFRLKD---GTLAYARLSHLSDSENSFNPDAFKPGNTHKCRIIDYSQMDELALL 442

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ +  E     + D+KP  VVKG V+ +  +G +V+    ++ L P  H+++  I  P
Sbjct: 443  SLRTAIIEAQYLRYHDIKPAAVVKGTVLTIKPYGMLVKVGEQIRGLVPAMHLADIPIKNP 502

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ VG E+  RVL    ++K++ +T KKTLV+SKL  ++ Y++    L THG+I +++
Sbjct: 503  EKKYHVGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLRAIACYSDVKPGLQTHGFIIRVK 562

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 563  DYGCIVKFYNDVQGLVPKHELSAEYIPDPERVFYTGQVVKAVVLNCEPSKERMLLSFKLL 622

Query: 523  -------KPTRVSEDD--LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +PT  S     ++ +G LV   +   T + + V V+        +PT HL+DH
Sbjct: 623  SDPELQKEPTGHSRKKGRVINIGQLVDVRISEKTKDGLEVTVLPSNIP-AFLPTPHLSDH 681

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + ++ ++   ++PG    ++L L     ++LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 682  VANSPLLYHWLQPGDTLHRVLCLSRSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 741

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 742  IGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQR 801

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK-----HNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   DA+      LL + +  LQ  +      +   ++ +     G ++E 
Sbjct: 802  MLLSLRLSDCMLGDAA-TTSLLLLNQCLEELQGVRSLMRNRDSILIQTLAEMTPGMILEL 860

Query: 747  KVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
             V E  + G VV       V G +   + +  AG  VESG   +  +L+V   +  V +S
Sbjct: 861  VVQEVLEDGSVVF--SGGPVPGLVLRASKYHRAGQEVESGQKKKVVVLNVDMLKLEVYVS 918

Query: 804  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 863
            L    +        N++A+K K+  E       HQ   AIV+ ++E++ V SL +  H  
Sbjct: 919  LHQDLV--------NKKAKKLKKGSE-------HQ---AIVQHLEESFAVASLVDTGHLA 960

Query: 864  GYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 922
             ++  S  N T +F  ++   GQ V  T+       T   L +   A   T   + K ++
Sbjct: 961  AFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRRTQKDSE 1020

Query: 923  -----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 965
                             KK +  +G +V   +  IKP  + +    G  G IH + + DD
Sbjct: 1021 TVDEDEEVDPALAIATIKKHALSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDD 1080

Query: 966  KSNVVENLF--SNFKIGQTVTARIIAKSNKPDMKKSFL-----------WELSIKPSMLT 1012
               V E     +  ++G+TVTAR+I   +    K  FL            ELS++PS L 
Sbjct: 1081 ---VPEGTCPTAKLQVGKTVTARVIGGRDVKTFK--FLPVSHPRFVRTIPELSVRPSEL- 1134

Query: 1013 VSEIGSKLLFEEC--------DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDS 1062
              E G   L                GQ VT ++  Y V  +W  + I+  ++ ++ +L +
Sbjct: 1135 --EDGHTALNSHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDVRGRIPLLLT 1192

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            +     L+   ++F IG+A++  V+  +  K  + L L             I    ++  
Sbjct: 1193 SLSFKVLKHPDKKFRIGQALSATVVGPDSSKAFVCLSL-------------IGPHKLE-- 1237

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
              +G++  GR++K+     GL+V       GRV         VSD    Y E    PL  
Sbjct: 1238 --KGEVAMGRVAKVTPN-EGLMVSFPFGKMGRVSV-----FHVSD---SYSEM---PLED 1283

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            +   + V+C VL     V     + LSLRS     S TN  +  + V+ P   +  I D+
Sbjct: 1284 FIPQKVVRCYVLSTEDEV-----LTLSLRS-----SKTN-PETKSRVEDP--EINSIHDV 1330

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRV 1299
                +++GYVK++  +G    L   +      S +S   +       K  P G+L+  ++
Sbjct: 1331 KKGQLLRGYVKSIEPQGVLFGLGPSVVGLAQYSKVSQYSLFKKALYNKYLPEGRLLTAKI 1390

Query: 1300 LSVEPLSKRVEVTLKTSDS 1318
            LSV      VE++   SD+
Sbjct: 1391 LSVNHQKNLVELSFLPSDT 1409



 Score =  282 bits (721), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 138/275 (50%), Positives = 199/275 (72%), Gaps = 4/275 (1%)

Query: 1526 EERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            EE L++ +  P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ 
Sbjct: 1591 EEALMDPRRPPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISF 1650

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1644
            REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV+L L  +Y ++E+ + 
Sbjct: 1651 REEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVYLHLADIYAKSEKFQE 1708

Query: 1645 ADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAI 1703
            A EL  +M+K+F+    VW++    LL++ Q G    V+QRAL  LPR +HI  I++ A 
Sbjct: 1709 AGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAGASHRVLQRALECLPRKEHIDVIAKFAQ 1768

Query: 1704 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1763
            LEF+ G A+R +++FE +LS YPKRTD+WS+Y+D  I+      +R +FER I LSL PK
Sbjct: 1769 LEFQLGDAERAKAIFENMLSIYPKRTDVWSVYIDMTIKHCSQKEVRDIFERVIHLSLAPK 1828

Query: 1764 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            +MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1829 RMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1863



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
            N S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V 
Sbjct: 731  NFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVV 789

Query: 1388 VKILKVDKEKRRISLGMK-SSYFKNDADNLQMSSEEESDEAIEEVGSY--NRSSLL 1440
             K+  VD+EK+R+ L ++ S     DA    +    +  E ++ V S   NR S+L
Sbjct: 790  AKVTNVDEEKQRMLLSLRLSDCMLGDAATTSLLLLNQCLEELQGVRSLMRNRDSIL 845



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 97/199 (48%), Gaps = 19/199 (9%)

Query: 1247 IVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
            +  G V  VT ++G  +        +V + ++SD Y E P ++F   K+V   VLS E  
Sbjct: 1241 VAMGRVAKVTPNEGLMVSFPFGKMGRVSVFHVSDSYSEMPLEDFIPQKVVRCYVLSTE-- 1298

Query: 1306 SKRVEVTLKTSDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
             + + ++L++S +   ++S     EIN++ ++  G ++ G +K +E  G+   +   ++V
Sbjct: 1299 DEVLTLSLRSSKTNPETKSRVEDPEINSIHDVKKGQLLRGYVKSIEPQGVLFGL-GPSVV 1357

Query: 1361 GLCHVSELSEDHVDNIETIYRA----GEKVKVKILKVDKEKRRISLG-MKSSYFKND--- 1412
            GL   S++S+  +   + +Y      G  +  KIL V+ +K  + L  + S   K D   
Sbjct: 1358 GLAQYSKVSQYSLFK-KALYNKYLPEGRLLTAKILSVNHQKNLVELSFLPSDTGKPDVFP 1416

Query: 1413 -ADNLQMSSEEESDEAIEE 1430
             +  L +S +EE     EE
Sbjct: 1417 ASPELPLSKQEERKIEAEE 1435


>gi|383416723|gb|AFH31575.1| protein RRP5 homolog [Macaca mulatta]
          Length = 1871

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 383/1394 (27%), Positives = 649/1394 (46%), Gaps = 153/1394 (10%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIIEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIGSVIEGK 747
            + LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G  ++  
Sbjct: 793  MLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDLV 852

Query: 748  VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL  
Sbjct: 853  VQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLHQ 912

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   ++
Sbjct: 913  DLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAFS 954

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK--- 922
              S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R     
Sbjct: 955  LTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPTRKDSET 1012

Query: 923  ----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
                            KK +  +G +V   +  IKP  + +    G  G IH + + DD 
Sbjct: 1013 VDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDV 1072

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML--- 1011
               +    +  K+G+TVTAR+I      DMK   FL            ELS++PS L   
Sbjct: 1073 PEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRPSELEDG 1128

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1129 HTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1188

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
             L+   ++F +G+A+   V+  +  K  L L L             I    ++    EG+
Sbjct: 1189 VLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE----EGE 1231

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            +  GR+ K+     GL V      +G++    +    VSD    Y E    PL  +   +
Sbjct: 1232 VAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI--FHVSD---SYSE---TPLEDFVPQK 1279

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D+    +
Sbjct: 1280 VVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQL 1326

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEP 1304
            ++GYV ++   G F  L   +      S++S           K  P GKL+  RVL +  
Sbjct: 1327 LRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHLPEGKLLTARVLRLNH 1386

Query: 1305 LSKRVEVTLKTSDS 1318
                VE++    D+
Sbjct: 1387 QKNLVELSFLPGDT 1400



 Score =  293 bits (750), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1554
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1674
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1739

Query: 1675 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1794 EYVES 1798
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 57/337 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 461

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1314 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 189/469 (40%), Gaps = 58/469 (12%)

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1002
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 432  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 485

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 486  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 543

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 544  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 586

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            Y  GQ VK  VL          + E S    L  +S   SSD     +  G   +K + +
Sbjct: 587  YT-GQVVKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAI 633

Query: 1243 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1299
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 634  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 692

Query: 1300 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            L +      V +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 693  LCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 751

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 752  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 41.6 bits (96), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1323 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1362

Query: 1376 IETIYRA----GEKVKVKILKVDKEKRRISL 1402
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|384945910|gb|AFI36560.1| protein RRP5 homolog [Macaca mulatta]
          Length = 1871

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 383/1394 (27%), Positives = 649/1394 (46%), Gaps = 153/1394 (10%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIIEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIGSVIEGK 747
            + LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G  ++  
Sbjct: 793  MLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDLV 852

Query: 748  VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL  
Sbjct: 853  VQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLHQ 912

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   ++
Sbjct: 913  DLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAFS 954

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK--- 922
              S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R     
Sbjct: 955  LTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPTRKDSET 1012

Query: 923  ----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
                            KK +  +G +V   +  IKP  + +    G  G IH + + DD 
Sbjct: 1013 VDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDV 1072

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML--- 1011
               +    +  K+G+TVTAR+I      DMK   FL            ELS++PS L   
Sbjct: 1073 PEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRPSELEDG 1128

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1129 HTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1188

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
             L+   ++F +G+A+   V+  +  K  L L L             I    ++    EG+
Sbjct: 1189 VLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE----EGE 1231

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            +  GR+ K+     GL V      +G++    +    VSD    Y E    PL  +   +
Sbjct: 1232 VAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI--FHVSD---SYSE---TPLEDFVPQK 1279

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D+    +
Sbjct: 1280 VVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQL 1326

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEP 1304
            ++GYV ++   G F  L   +      S++S           K  P GKL+  RVL +  
Sbjct: 1327 LRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHLPEGKLLTARVLRLNH 1386

Query: 1305 LSKRVEVTLKTSDS 1318
                VE++    D+
Sbjct: 1387 QKNLVELSFLPGDT 1400



 Score =  293 bits (749), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1554
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1674
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLQRS 1739

Query: 1675 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1794 EYVES 1798
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 57/337 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 461

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1314 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 189/469 (40%), Gaps = 58/469 (12%)

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1002
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 432  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 485

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 486  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 543

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 544  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 586

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            Y  GQ VK  VL          + E S    L  +S   SSD     +  G   +K + +
Sbjct: 587  YT-GQVVKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAI 633

Query: 1243 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1299
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 634  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 692

Query: 1300 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            L +      V +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 693  LCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 751

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 752  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 41.6 bits (96), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1323 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1362

Query: 1376 IETIYRA----GEKVKVKILKVDKEKRRISL 1402
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|338716596|ref|XP_001499541.3| PREDICTED: protein RRP5 homolog [Equus caballus]
          Length = 1870

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 394/1394 (28%), Positives = 650/1394 (46%), Gaps = 155/1394 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      +E  A E+ L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLSEQVAQEEPLKDLARLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L   +K  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLSVTEK--GKKNVKLSLNPKNVNEVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLP----RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV 169
            Y++  G+     FLP    +  + +N G  +K G  L  ++  +  +  VV LS     V
Sbjct: 202  YLVDIGVAGARAFLPLQKAQEYIRQNKGAKLKVGQYLNCIIEEVKGSGGVVSLSIGHSEV 261

Query: 170  SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 229
            S  +  +    +++ L+PG++V  +VQ +   G+ L+FL++FTG VD  HL    P    
Sbjct: 262  STAIATEEHNWTLNNLLPGLVVKAQVQKVTPLGLTLNFLSFFTGLVDFMHLD---PKKAG 318

Query: 230  KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRVD 286
            K  Y  ++ V A +L V P +RAV L+L P  L    P + +    +G + D   V    
Sbjct: 319  K--YFSNQAVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLSCQHLGAVLDNVPVQGFF 376

Query: 287  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 346
               G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA   
Sbjct: 377  SKAGATFRLKDGAL---AYARLSHLSDPKNVFNPETFKPGNTHKCRIIDYSQMDELALLS 433

Query: 347  LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 406
            L+ S  E     + D+KPG +VKG V+ +  +G +V+    ++ L P  H+++  +  P 
Sbjct: 434  LRTSVIEAQYLRYHDIKPGALVKGTVLTIKPYGMLVKVGEQIRGLVPPMHLADILMKNPE 493

Query: 407  KKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
            KK++ G E+  RVL    +++++ +T KKTLV+SKL  ++ YA+A   L THG+I +++ 
Sbjct: 494  KKYRTGDEVKCRVLLCDPEARKLMMTLKKTLVESKLPAITCYADAKPGLQTHGFILRVKD 553

Query: 465  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 524
            +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF +  
Sbjct: 554  YGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSKERMLLSFKLLS 613

Query: 525  TRVSE--------DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 576
                E           V +G L+   V   T + + V V+        +PT HL+DH+ +
Sbjct: 614  DSKKECAGHNQKKRRAVNVGQLMDVKVLEKTKDGLEVAVLPHNIP-AFLPTPHLSDHVAN 672

Query: 577  ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGY 634
              ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S IHP  ++ G+
Sbjct: 673  GPLLYHWLQAGDTLHRVLCLSQSERHVLLCRKPALVSTVEGGQDPKSFSEIHPGMLLIGF 732

Query: 635  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 694
            V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R+ L
Sbjct: 733  VKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLL 792

Query: 695  SLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHE 750
            SL+ S C+  D +          LEE+  +     +  S L + +     G V++ +V E
Sbjct: 793  SLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMVLDLEVQE 852

Query: 751  SNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 807
              + G V+ F E   V G +     +  AG  VESG   +A IL+V   +  V +SL   
Sbjct: 853  VLEDGSVL-FSE-GPVPGLVLRANRYHRAGQEVESGQKKKAVILNVDMLKLEVHVSLCHD 910

Query: 808  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 867
             +        NR+A+K K+  E       HQ   AIV+ ++E++ V SL E  H   ++ 
Sbjct: 911  LV--------NRKAKKLKKGSE-------HQ---AIVQHLEESFAVASLVETGHLAAFSL 952

Query: 868  VSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK---- 922
             S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R      
Sbjct: 953  TSHLNDTFRFDSEKLHVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRQTRKDSEAV 1010

Query: 923  ---------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
                           KK +  +G +V   +  IKP  + +    G  G IH + + DD  
Sbjct: 1011 DEDEEVDATLVVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLADGIIGCIHASHILDDVP 1070

Query: 968  NVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPSML-----TV 1013
                   +  K+G+TVTAR+I     K+ K  P     F+    ELS++PS L     T 
Sbjct: 1071 AGTSPT-AKLKVGKTVTARVIGGRDVKTFKFLPISHPRFIRTIPELSVRPSELEKDGHTA 1129

Query: 1014 SEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1070
                S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++     L+
Sbjct: 1130 LNTHSVSPLEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLK 1189

Query: 1071 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG 1130
               ++F IG+A+   V++ +  K  L L L             I   N++    +G++  
Sbjct: 1190 HPDKKFRIGQALKATVVNPDSSKAFLCLSL-------------IGPHNLE----KGEVAM 1232

Query: 1131 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1190
            GR+ K+ +   GL V       GRV         VSD    Y E    PL  +   + V+
Sbjct: 1233 GRVVKV-TPKKGLTVSFPFGKIGRVSI-----FHVSD---SYSE---TPLEDFTPQKVVR 1280

Query: 1191 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1250
            C VL  +  V     + LSLRS     S TN    S   D     +  ++D+    +++G
Sbjct: 1281 CYVLSTAGHV-----LTLSLRS-----SRTNPETKSKIADP---EINSLKDIREGQLLRG 1327

Query: 1251 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------EKEFPIGKLVAGRVLSVEP 1304
            YVK+V   G    L   +   V L+        SP       +  P GKL+  +VLS+  
Sbjct: 1328 YVKSVQPHGVLFGLGPSV---VGLAQYPHVSQYSPTEKALYNRHLPEGKLLTAKVLSLNH 1384

Query: 1305 LSKRVEVTLKTSDS 1318
                VE++    D+
Sbjct: 1385 QKNLVELSFLPGDT 1398



 Score =  280 bits (717), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 139/285 (48%), Positives = 202/285 (70%), Gaps = 4/285 (1%)

Query: 1516 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1574
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1581 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1640

Query: 1575 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1634
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1641 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1698

Query: 1635 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1693
            +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +
Sbjct: 1699 IYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPVKE 1758

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753
            H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1759 HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFE 1818

Query: 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1819 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1863



 Score = 72.4 bits (176), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 150/335 (44%), Gaps = 47/335 (14%)

Query: 1075 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1134
            ++   +AV   VL ++   + +RL LRP           +S  ++   +    + G    
Sbjct: 319  KYFSNQAVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLSCQHLGAVLDNVPVQG---- 374

Query: 1135 KILSGVGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1192
               S  G    ++ G   Y R+ H ++ KN+             F+P + +  G   KC+
Sbjct: 375  -FFSKAGATFRLKDGALAYARLSHLSDPKNV-------------FNPET-FKPGNTHKCR 419

Query: 1193 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1252
            +++ S+         LSLR+S+                   ++L +  D+ P  +V+G V
Sbjct: 420  IIDYSQMDELAL---LSLRTSV----------------IEAQYL-RYHDIKPGALVKGTV 459

Query: 1253 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1312
              +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P ++++ +T
Sbjct: 460  LTIKPYGMLVKVGEQIRGLVPPMHLADILMKNPEKKYRTGDEVKCRVLLCDPEARKLMMT 519

Query: 1313 LKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            LK +  +S+  +   I   ++   G    G I RV+ YG  +   N ++ GL    ELS 
Sbjct: 520  LKKTLVESKLPA---ITCYADAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSA 575

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            ++V + E ++ AG+ VKV +L  +  K R+ L  K
Sbjct: 576  EYVPDPERVFYAGQVVKVVVLNCEPSKERMLLSFK 610



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 33/245 (13%)

Query: 871  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 930
            +   K P K+F  GQ++ ATV+  P SS A   L L+                  + + G
Sbjct: 1185 FKVLKHPDKKFRIGQALKATVVN-PDSSKAFLCLSLIGP---------------HNLEKG 1228

Query: 931  SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
             +    + ++ P + L + F  G  GR+ I  V+D  S   E    +F   + V   +++
Sbjct: 1229 EVAMGRVVKVTPKKGLTVSFPFGKIGRVSIFHVSDSYS---ETPLEDFTPQKVVRCYVLS 1285

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1045
             +         +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V     
Sbjct: 1286 TAG-------HVLTLSLRSSR-TNPETKSKIADPEINSLKDIREGQLLRGYVKSVQPHGV 1337

Query: 1046 LLTISRHLKA-QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1104
            L  +   +     +   S Y P+E   + R    GK +T  VLS+N +K L+ L   P  
Sbjct: 1338 LFGLGPSVVGLAQYPHVSQYSPTEKALYNRHLPEGKLLTAKVLSLNHQKNLVELSFLPGD 1397

Query: 1105 DGISD 1109
             G  D
Sbjct: 1398 TGKPD 1402



 Score = 44.3 bits (103), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
            + S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V 
Sbjct: 719  SFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVV 777

Query: 1388 VKILKVDKEKRRISLGMKSS 1407
             K+  VD+EK+R+ L ++ S
Sbjct: 778  AKVTNVDEEKQRMLLSLRLS 797


>gi|40352805|gb|AAH64486.1| PDCD11 protein [Homo sapiens]
 gi|51593565|gb|AAH80560.1| PDCD11 protein, partial [Homo sapiens]
          Length = 1434

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 380/1398 (27%), Positives = 644/1398 (46%), Gaps = 161/1398 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     G  ++ 
Sbjct: 793  MLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDL 851

Query: 747  KVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL 
Sbjct: 852  VVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLH 911

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
               +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   +
Sbjct: 912  QDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAF 953

Query: 866  ASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-- 922
            +  S  N T +F  ++   GQ V  T+       T   L +   A   T   + K ++  
Sbjct: 954  SLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETV 1013

Query: 923  ---------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
                           KK +  +G +V   +  IKP  + +    G  G IH + + DD  
Sbjct: 1014 DEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVP 1073

Query: 968  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML--- 1011
                   +  K+G+TVTAR+I      DM K+F +             ELS++PS L   
Sbjct: 1074 EGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSELEDG 1128

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1129 HTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1188

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIHEG 1126
             L+   ++F +G+A+   V+  +  K  L L L  P +                  + EG
Sbjct: 1189 VLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTGPHK------------------LEEG 1230

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            ++  GR+ K+    G         L     F ++  + +      Y E    PL  +   
Sbjct: 1231 EVAMGRVVKVTPNEG---------LTVSFPFGKIGTVSIFHMSDSYSE---TPLEDFVPQ 1278

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+D+    
Sbjct: 1279 KVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQ 1325

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVL 1300
            +++GYV ++   G F  L   +      S++S     SP K+       P GKL+  RVL
Sbjct: 1326 LLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQ---HSPSKKALYNKHLPEGKLLTARVL 1382

Query: 1301 SVEPLSKRVEVTLKTSDS 1318
             +      VE++    D+
Sbjct: 1383 RLNHQKNLVELSFLPGDT 1400



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 150/337 (44%), Gaps = 57/337 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVL 461

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1314 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 164/735 (22%), Positives = 276/735 (37%), Gaps = 132/735 (17%)

Query: 775  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 834
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 835  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 891
             V Q +N IVE VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQV 288

Query: 892  MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 942
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVHLSL 345

Query: 943  ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 966
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 967  SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1024
                 N+F+   FK G T   RII  S   +     L  LS++ S++             
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQ------YLRY 447

Query: 1025 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRRFHIG 1079
             D+  G  V G V  + +   L+ +   ++  +        P  L +      ++++HIG
Sbjct: 448  HDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLV-------PPMHLADILMKNPEKKYHIG 500

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1139
              V   VL  + E K L + L+          +    D        G I+  R+      
Sbjct: 501  DEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFII--RVKDY--- 555

Query: 1140 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1199
              G +V+   ++ G V   EL    + DP     E  F     Y  GQ VK  VL     
Sbjct: 556  --GCIVKFYNNVQGLVPKHELSTEYIPDP-----ERVF-----YT-GQVVKVVVL----- 597

Query: 1200 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1259
                 + E S    L  +S   SSD     +  G   +K + ++   +V   V   T  G
Sbjct: 598  -----NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDG 650

Query: 1260 CFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
              + +L   + A +  S+LSD     P        G ++  RVL +     RV +  K +
Sbjct: 651  LEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLCRKPA 709

Query: 1317 DSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
               T    +   N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +
Sbjct: 710  LVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTS 768

Query: 1376 IETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN 1435
                +  G+ V  K+  VD+EK+R+ L ++ S       +L ++S    ++ +EE+    
Sbjct: 769  TSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS--DCGLGDLAITSLLLLNQCLEELQGV- 825

Query: 1436 RSSLLENSSVAVQDM 1450
            RS +    SV +Q +
Sbjct: 826  RSLMSNRDSVLIQTL 840



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 118/246 (47%), Gaps = 35/246 (14%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKTF-LCLSLTGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1248

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V + ++SD Y E+P ++F   K+V   +LS       + ++L++S +   +
Sbjct: 1249 SFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPET 1306

Query: 1323 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
            +S     EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  + +
Sbjct: 1307 KSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPSKK 1364

Query: 1378 TIYRA----GEKVKVKILKVDKEKRRISLGMKSSYFKNDA---DNL------QMSSEEES 1424
             +Y      G+ +  ++L+++ +K  + L    S+   D    D L      Q++ +EE 
Sbjct: 1365 ALYNKHLPEGKLLTARVLRLNHQKNLVEL----SFLPGDTGKPDVLSASLEGQLTKQEER 1420

Query: 1425 DEAIEE 1430
                EE
Sbjct: 1421 KTEAEE 1426


>gi|358374933|dbj|GAA91521.1| rRNA biogenesis protein RRP5 [Aspergillus kawachii IFO 4308]
          Length = 1823

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 363/1345 (26%), Positives = 649/1345 (48%), Gaps = 163/1345 (12%)

Query: 533  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
            V +G++V G V+  ++  N V  ++ V+A G + G +P+ H AD        K   + G 
Sbjct: 559  VTVGAVVKGKVEKLLIGANGVDGLIVVLADGIT-GLVPSMHFADTPLQFPEKK--FREGM 615

Query: 589  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
                ++L ++ E   + L+ K SL+NS   +  D   I P +   G +  I   G  V+F
Sbjct: 616  TVSTRILSVNLEKRQIRLTLKKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQF 675

Query: 648  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
             G + GF P S+  +    D S+ + +GQ V  + L V++   ++ +S K         +
Sbjct: 676  YGSIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKLAVSCKDP------ET 729

Query: 708  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES----NDFGVVVSFEEH 763
            F + +    E I       H G         + G+V E    ++    +D+G+V      
Sbjct: 730  FTEAYRKAFENI-------HPGM-------LVSGTVFEKSADDTLLKLDDYGLVARLNVE 775

Query: 764  SDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 822
              V G  +      + +  G  + +  ++D+ +A RL+          R     S ++A 
Sbjct: 776  HVVDGSPSKQASTLSKIRVGQKLNELMVIDIQRAHRLI----------RVTGRQSLKKAA 825

Query: 823  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQK 879
            K        +DL     V   +  +  N + +        IG      V D N  K P  
Sbjct: 826  KHGSIPSKFEDLKEGADVTGFIRNITMNGVFVEF--LGGVIGLVPKRLVGDENVNK-PDY 882

Query: 880  QFLNGQSVIATVMAL------------PSSST-AGRLLLLLKAISETETSSS------KR 920
                GQ V ATV ++            PS +T AG           T T  +      + 
Sbjct: 883  DMARGQVVTATVHSVDADFKRFILSMNPSEATHAGAKKKAAAKPEPTPTDDAVANAIDEG 942

Query: 921  AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFK 978
             K  S +  G + + ++  ++  ++ ++      GRI ++EV D   ++ +       F+
Sbjct: 943  IKSMSDFTFGRVTKCKVVSVRATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFR 1002

Query: 979  IGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1029
              Q ++ARI+   +  + K         K  ++ELS+KPS L  +   S L  E+  V +
Sbjct: 1003 PKQVISARILGIHDARNHKFLPISHRTGKFPVFELSVKPSFLQAAN-PSPLNLEQ--VQV 1059

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            G    G+V  V ++   + +S +++ +L ++D++ + S L + ++ + +G A+  HV ++
Sbjct: 1060 GSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASDDLSLLADVEKHYPVGSALKVHVSAV 1119

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
            + +K  L L  +   D +  + V +           G ++ GR++K+      +++Q+  
Sbjct: 1120 DADKGRLDLSAKQRSDKLVFEDVSV-----------GMVLPGRVTKVTER--QVIMQLSK 1166

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
             + G V   ++ +          D  + +P + Y + + ++  V+ I +  +    + LS
Sbjct: 1167 SIVGAVDLIDMAD----------DFSKANP-TVYQKNEVLRACVVAIDKANK---KISLS 1212

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
            LR S           LS+ +    K +  I+ L  N IV+G+++ V   G F+ + R + 
Sbjct: 1213 LRPS---------KVLSSSLPVQDKEITSIKQLKVNDIVRGFIRRVADNGLFVTVGRDVT 1263

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1329
            A V +S+LSD Y++  +  F   +LV GRV   +    +++++LK S      ++ I  L
Sbjct: 1264 AYVRISDLSDSYLKEWKDSFQADQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPIT-L 1322

Query: 1330 SNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
             +L  G IV G++++VE +G F+ I+ + N+ GLCH SE++E  V++  T+Y  G+ VK 
Sbjct: 1323 HDLKPGQIVTGKVRKVEEFGAFVVIDGSKNISGLCHRSEMAEGRVEDARTLYEEGDAVKA 1382

Query: 1389 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN-RSSLLENSSVAV 1447
            KILK+D+++ +IS G+K+SYF  + D+ +   ++    +++  G  +   S  E S V++
Sbjct: 1383 KILKIDRKQEKISFGLKASYFDEEEDSDEEEDDDSEGVSLDGFGGVDVDGSDDEESDVSM 1442

Query: 1448 QDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGI-------SQNQGHTDEAK 1500
              +D+E +          +   +  P + +        D G+       S N    DEA 
Sbjct: 1443 GGVDLEGDSDEESEEESDDEEMTDAPAKASR------KDGGLGAGGFDWSGNNQDDDEAG 1496

Query: 1501 T-IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYM 1559
               D  +   ++ K+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W++YM
Sbjct: 1497 ARSDSDDEEDSRPKKKKNRKPEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLLWLQYM 1556

Query: 1560 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1619
            AF L + +VEKAR IAERAL+TI I ++ EKLNIWVA  NLEN YGN  ++ +  VF+RA
Sbjct: 1557 AFQLELGEVEKAREIAERALRTITIGQDAEKLNIWVAMLNLENTYGN--DDTLEDVFKRA 1614

Query: 1620 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--E 1676
             QY D ++V+   + +Y ++ +N+ AD+L    + KK   S K ++     L       E
Sbjct: 1615 CQYNDTQEVYERTISIYIQSGKNEKADDLFQTALKKKVFGSPKFFVNYASFLFDTMAAPE 1674

Query: 1677 GVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSI 1734
              +A++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PK+ DLW+I
Sbjct: 1675 RARALLPRALQSLPSHTHVELTSKFGQLEFRSANGDIERGRTVFEGLLSSFPKKIDLWNI 1734

Query: 1735 YLDQEIRLGDVDLIRGLFERAISL----------------SLPPKKMKFLFKKYLEYEKS 1778
             LD EI+ GD + +R LFER + +                 + PK+ KF FKK+L +E+ 
Sbjct: 1735 LLDLEIKNGDAEQVRRLFERVLGIRDTKKGGAAAAVEASKKVRPKQAKFFFKKWLSFEEK 1794

Query: 1779 V-----GEEERIEYVKQKAMEYVES 1798
            +     G ++ +E +K KA +YV+S
Sbjct: 1795 LASAEGGNDKMVEEIKAKAADYVKS 1819



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 181/747 (24%), Positives = 323/747 (43%), Gaps = 58/747 (7%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE---------------ANEDNLL 49
           G V+ +N  D+ + LP  L G      ++  +L+ +IE                ++   L
Sbjct: 171 GQVSSINAHDIGLSLPNNLTGYVPLT-SVSKVLEEKIEKILKDDGSDEEEDDEDDDSLDL 229

Query: 50  PTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 106
              F++GQ +   V+       D     +++I LS+       GLS   +     + A V
Sbjct: 230 HKYFYLGQYLRAYVVSAGSNAADASAKSRKRIELSVDPRQANSGLSKSDLVVNSAVQASV 289

Query: 107 KSIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSIDRTRKVVYLS 163
            S+EDHG ++  GL      GF+    +  +     +K G +   +V   +    V+ LS
Sbjct: 290 VSVEDHGLVMDLGLEGGEVKGFMSSKEVDPKTQPSTIKEGSVFLCMVTGQNANGSVIKLS 349

Query: 164 SDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           ++  +              +I   +PG      +  +   G+    +     TVD+    
Sbjct: 350 ANLQSAGSIKKSHYLSTAPTITSFLPGTAAEILLTDVSSTGMAGKIMGMLDATVDLVQSG 409

Query: 222 NTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH---NRAPPSH---VKV 273
            +    +    Y+   K+  R++   P++    VG +L  ++        P S      +
Sbjct: 410 GSSGKDDLTKKYSTGAKIKGRLVCTFPSAEPYKVGFSLLDHVAKFATEGGPGSSDDAPAI 469

Query: 274 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVR 330
             I  ++KVV+V+ GLG+ + I ST      +V +S +A+ +V  +  +   ++  S   
Sbjct: 470 SAIVPEAKVVKVEPGLGVYVQIGST--KHLGFVHVSRLADGQVETISPELGPFRVESVHE 527

Query: 331 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFP 385
            R++G+  ++ L     +    +       DV  G VVKGKV    I  +   G IV   
Sbjct: 528 GRVVGYSAIDNLYLLSFEKKVIDQPFLRVEDVTVGAVVKGKVEKLLIGANGVDGLIVVLA 587

Query: 386 GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAIL 443
            G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L+ S+ AI 
Sbjct: 588 DGITGLVPSMHFADTPLQFPEKKFREGMTVSTRILSVNLEKRQIRLTLKKSLLNSESAIW 647

Query: 444 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 503
             Y E T    + G I KI+ HG  V+FY  ++GF P SE+      +PS  + +GQVV 
Sbjct: 648 KDYEEITPGTQSPGTIIKIQPHGAVVQFYGSIRGFLPVSEMSEAYIKDPSQHFRLGQVVN 707

Query: 504 CRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
              + S+ ASR         P   +E      + +  G LVSG V   + +  ++ +   
Sbjct: 708 VHAL-SVDASREKLAVSCKDPETFTEAYRKAFENIHPGMLVSGTVFEKSADDTLLKLDDY 766

Query: 559 GYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINS 614
           G     +  EH+ D    + A+ + S I+ G + ++L+V+D + ++ L+  + + SL  +
Sbjct: 767 GLV-ARLNVEHVVDGSPSKQASTL-SKIRVGQKLNELMVIDIQRAHRLIRVTGRQSLKKA 824

Query: 615 AQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 672
           A+   +PS    +   + V G++ NI   G FV FLG + G  P+    D          
Sbjct: 825 AKHGSIPSKFEDLKEGADVTGFIRNITMNGVFVEFLGGVIGLVPKRLVGDENVNKPDYDM 884

Query: 673 YVGQSVRSNILDVNSETGRITLSLKQS 699
             GQ V + +  V+++  R  LS+  S
Sbjct: 885 ARGQVVTATVHSVDADFKRFILSMNPS 911



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 178/406 (43%), Gaps = 45/406 (11%)

Query: 52   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 98
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1000 FFRPKQVISARILGIHDARNHKFLPISHRTGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1059

Query: 99   GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 152
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1060 GSTWVGFVNNVADDCLWINLS-PNVRGRLRLMDASDDLSLLADVEKHYPVGSALKVHVSA 1118

Query: 153  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
            +D  +  + LS+   +  K V +D   +S+ +++PG     RV  + E  V++       
Sbjct: 1119 VDADKGRLDLSAKQRS-DKLVFED---VSVGMVLPG-----RVTKVTERQVIMQLSKSIV 1169

Query: 213  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 272
            G VD+  + + F   N    Y +++ + A ++ +D  ++ + L+L P  + + + P   K
Sbjct: 1170 GAVDLIDMADDFSKAN-PTVYQKNEVLRACVVAIDKANKKISLSLRPSKVLSSSLPVQDK 1228

Query: 273  VGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 325
                  Q KV  + RG        GL + +        AYV ISD+++  +++ +  ++ 
Sbjct: 1229 EITSIKQLKVNDIVRGFIRRVADNGLFVTVGR---DVTAYVRISDLSDSYLKEWKDSFQA 1285

Query: 326  GSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIV 382
               V+ R+      +G     LK S  +       T  D+KPG +V GKV  V+ FGA V
Sbjct: 1286 DQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPITLHDLKPGQIVTGKVRKVEEFGAFV 1345

Query: 383  QFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
               G   +  LC    M+E  +      ++ G  +  ++L +  K+
Sbjct: 1346 VIDGSKNISGLCHRSEMAEGRVEDARTLYEEGDAVKAKILKIDRKQ 1391



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 152/362 (41%), Gaps = 34/362 (9%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 62
            W G V  V +  L I L   +RG  R  DA D   D  + A+ +   P    VG  +   
Sbjct: 1063 WVGFVNNVADDCLWINLSPNVRGRLRLMDASD---DLSLLADVEKHYP----VGSALKVH 1115

Query: 63   VLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 122
            V  +D DK         L L        L  E V  GMVL   V  + +   I+     S
Sbjct: 1116 VSAVDADKGR-------LDLSAKQRSDKLVFEDVSVGMVLPGRVTKVTERQVIMQLS-KS 1167

Query: 123  FTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTK 175
              G +   ++A++      P +     +L+  V +ID+  K + LS  P  V  S    +
Sbjct: 1168 IVGAVDLIDMADDFS-KANPTVYQKNEVLRACVVAIDKANKKISLSLRPSKVLSSSLPVQ 1226

Query: 176  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 235
            D +  SI  L    +V   ++ + +NG+ ++     T  V I  L +++    WK+ +  
Sbjct: 1227 DKEITSIKQLKVNDIVRGFIRRVADNGLFVTVGRDVTAYVRISDLSDSY-LKEWKDSFQA 1285

Query: 236  HKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLGL 291
             + V  R+   D     + ++L   +L  + +AP +   +K G I    KV +V+     
Sbjct: 1286 DQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPITLHDLKPGQIV-TGKVRKVEEFGAF 1344

Query: 292  LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKAS 350
            ++   S  +S   +   S++AE  V      Y+EG  V+ +IL   R  E ++ G LKAS
Sbjct: 1345 VVIDGSKNISGLCHR--SEMAEGRVEDARTLYEEGDAVKAKILKIDRKQEKISFG-LKAS 1401

Query: 351  AF 352
             F
Sbjct: 1402 YF 1403


>gi|294659326|ref|XP_461694.2| DEHA2G03410p [Debaryomyces hansenii CBS767]
 gi|199433877|emb|CAG90142.2| DEHA2G03410p [Debaryomyces hansenii CBS767]
          Length = 1716

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 405/1530 (26%), Positives = 702/1530 (45%), Gaps = 228/1530 (14%)

Query: 362  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
            ++PG++V   V  +   G + +  G V A   LP++++F++     K+ +G  +  RV G
Sbjct: 317  IEPGILVDALVSDITKNGIVTKVFGLVDATINLPNLNDFDLQTLKHKYTIGNNIKARVTG 376

Query: 422  V----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG-----CFVRF- 471
            +     +KR+ ++    ++    +  S  + A D         ++E  G      FV F 
Sbjct: 377  ILLKSGTKRLMLSQLPHIISFSSS-PSDDSSALDAFPIGHIFEEVEVKGSDPNYVFVGFG 435

Query: 472  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINLSFMMKPTRVSE 529
             + + G    S++  DP       Y VG   K R++  +SI     + +   +  ++   
Sbjct: 436  SSTLHGQVHNSKI--DPSKNLEIDYSVGSKHKARVIGYNSIENLLVLTMEPKVIDSKFLT 493

Query: 530  DDLVKLGSLVSG--VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 587
             D + +G  V+G  +V V+  +  ++  I  G+ +  +P  H++D          ++ P 
Sbjct: 494  TDDIPVGEFVNGAEIVKVLPDSGGIIVKILNGF-EALVPGNHMSD--------VRLVYPE 544

Query: 588  YEFD-----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY-------- 634
             +F      +  VL  +   L  + K SL+N           I  + ++ G+        
Sbjct: 545  RKFKVGGKVKGRVLRKQGRKLFFTLKKSLVN-----------IEDDEILTGFDKATVGFK 593

Query: 635  ----VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
                V   +  G  V F G L  + P+++  +      S    +GQ+V   IL+VN +  
Sbjct: 594  SPATVEKFVHNGAIVSFFGNLRAYLPKNEISETFVNQASDHLKIGQTVNVKILNVNKDDQ 653

Query: 691  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 750
            R+ ++L+QS                   I +  S K   S+L   +      V+E KV E
Sbjct: 654  RLMVTLRQS-------------------IDLSDSQKATISDLYPGKSITTAIVVE-KVKE 693

Query: 751  SNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLV 800
            S    V+V  E +S++ G I    L+    E           G  I   +L+     R V
Sbjct: 694  S----VIVELE-NSNLRGVIFSGHLSDGNYEQNRSIFKKLPIGDKIDVLVLEKDLKSRSV 748

Query: 801  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEY 859
             +S K   I          +A K+       KD+ V ++ ++  ++ V    L +S    
Sbjct: 749  TVSAKASLI----------EAAKQDEVPAYFKDIKVDNKMLHGYIKSVTNMGLFISFAGK 798

Query: 860  NHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 919
               +  A  +     +   K+F   QSV   V+ +   +   R LL LK    ++ SS+ 
Sbjct: 799  LTGLVLAKYATDKPDEDLSKKFYKYQSVSCRVIRIDEENK--RFLLSLKKSENSKDSSNT 856

Query: 920  RA------KKKSS---YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND------ 964
                     +KS+   Y  G +  A +  IK  +L ++      GR+ IT+  +      
Sbjct: 857  EEVINPIDSEKSTVGDYTPGVITSAVVKSIKGTQLNVQLADNLQGRVDITQCFNSWSEIK 916

Query: 965  DKSNVVENLFSNFKIGQTVTARIIAKSNK------PDMKKSFLWELSIKPSMLTVSEIGS 1018
            DK   +     N KI   V     AK+++          K+ + ELSI    L   +   
Sbjct: 917  DKKQPLSQFHKNDKIKVKVIGFHDAKTHRFLPITHRKSNKNIVLELSILEKELKTPDEPY 976

Query: 1019 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1078
             +L    + S G +   Y+  V   +  ++I+  +K ++  ++ + + S   + + +  I
Sbjct: 977  HML-NLSNTSEGSKWVAYINNVAKGFVWVSITPTIKGRISFMELSDDVSVFDDIENKLPI 1035

Query: 1079 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKI 1136
            G A+   V  I+ +   + L  R              N  M T   +  GD +  R+ K+
Sbjct: 1036 GMAIEATVKDIDNDHNTVVLSAR--------------NSTMGTVKDVKVGDKLPARVLKV 1081

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
                  ++V++G +L      T        D L+ Y E   +     D   F    VL +
Sbjct: 1082 RDTF--VLVELGKNLVASSFIT--------DALNDYTEKLENVFHTND---FCTATVLAV 1128

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
                +    + +SLR+                 D   K ++ IEDL+   I++G+VKNV 
Sbjct: 1129 DEESK---KIAVSLRND----------------DATDKVIDSIEDLNRGDIIRGFVKNVA 1169

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
            + G +I L R + A V +++LSD +++  +K F   + + G++ S +    R+ +TLK  
Sbjct: 1170 NNGVYIALGRSIHALVRITDLSDSFLKDWKKYFKPHQPIIGKISSCKE-EGRILMTLK-- 1226

Query: 1317 DSRTASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSEL 1368
                  +SEIN          +L VG+I  G ++RV  +G FI ++ T N+ GLCH S++
Sbjct: 1227 ------ESEINGELNVLKKFEDLEVGEIFEGSVRRVTDFGAFIKLDGTVNISGLCHHSQI 1280

Query: 1369 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-----DADNLQMSS--- 1420
            S++ V+N+ +++  G++VKVKIL +D+EK+++SLGMK+SYF N     + D+++MS    
Sbjct: 1281 SDNDVENVSSLFGEGDRVKVKILAIDQEKKQLSLGMKASYFTNADASSEQDDVEMSDAND 1340

Query: 1421 ----------EEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1470
                      E E+DE+ +EV       +LEN + A ++ + +SED          SR+S
Sbjct: 1341 QNDSGSESDDEHENDESDDEV----MEDVLENKNGASEN-ESDSEDDEE----NDNSRSS 1391

Query: 1471 -VPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1529
             V  L  N  D    + +    N   +DE     EK  +    K  E++  ++       
Sbjct: 1392 GVSGLSTNGFDWTASILDQAEDNYSSSDEEDFTHEKKKKKKTSKVIEDKTADLNTR---- 1447

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
                AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1448 ----APQSVSDFERLLVGNPNSSIMWMNYMSFQLQLSEVDKAREIGERALKTINYREEQE 1503

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            K+NIW+A  NLEN +G   ++ + + F+R+ QY D   +H  L+ +Y  +E+ + ADEL 
Sbjct: 1504 KMNIWIALLNLENTFGT--DDTLEETFKRSCQYMDSLIMHQKLVSIYTMSEKFRKADELY 1561

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
              M KKF  +  +W++    LL +Q  +    V+ R+L  LP+ +HI+ + +   LEF  
Sbjct: 1562 KVMCKKFGKNVSIWVQYGSSLLDRQLNDEAHEVLARSLQVLPKREHIEVVRKFGQLEFTK 1621

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1768
            G  ++GRS+FEG++S+ PKR DLW++Y+DQEI+  +   +  LFERAI+  L  K+ KF 
Sbjct: 1622 GDPEQGRSLFEGLISDVPKRIDLWNVYIDQEIKQDNKAKVEDLFERAITKKLSRKQAKFF 1681

Query: 1769 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            F K+L +E+   +++    VK KA EYV+S
Sbjct: 1682 FSKWLSFEEEKNDQQFAARVKAKAAEYVQS 1711



 Score =  201 bits (512), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 182/690 (26%), Positives = 333/690 (48%), Gaps = 38/690 (5%)

Query: 48  LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
           +L  IF +GQ +   V++   D K   K++I LS+   ++   L  E +  G +L   +K
Sbjct: 181 VLKEIFKIGQWLRAKVVKPSSDSK---KKRIQLSIEPEVVNATLEDEDLTPGNLLQCSIK 237

Query: 108 SIEDHGYILHFGLPSFTGFLPRNNLAENSGI---DVKPGLLLQGVVRSIDRTRKVVYLSS 164
           SIEDHG IL+ G  +F+GF+    L  +  I   D+  G +L   + S   +R +     
Sbjct: 238 SIEDHGVILNVGRSNFSGFISNKELKNSKDIEAEDLNVGDVLLTSIVSKPSSRTITLRPV 297

Query: 165 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
             ++ SK  +      S+D + PG++V   V  I +NG++         T+++ +L N F
Sbjct: 298 QSNSTSKKASVSTIS-SVDSIEPGILVDALVSDITKNGIVTKVFGLVDATINLPNL-NDF 355

Query: 225 PTTNWKNDYNQHKKVNARI--LFVDPTSRAVGLTLNPYLLHNRAPPSHVK-------VGD 275
                K+ Y     + AR+  + +   ++ + L+  P+++   + PS          +G 
Sbjct: 356 DLQTLKHKYTIGNNIKARVTGILLKSGTKRLMLSQLPHIISFSSSPSDDSSALDAFPIGH 415

Query: 276 IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 335
           I+++ +V   D    + +   S+ +    + +  D +    + LE  Y  GS  + R++G
Sbjct: 416 IFEEVEVKGSDPNY-VFVGFGSSTLHGQVHNSKIDPS----KNLEIDYSVGSKHKARVIG 470

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALC 392
           +  +E L    ++    +    T  D+  G  V G +++ V  DS G IV+   G +AL 
Sbjct: 471 YNSIENLLVLTMEPKVIDSKFLTTDDIPVGEFVNGAEIVKVLPDSGGIIVKILNGFEALV 530

Query: 393 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATD 451
           P  HMS+  +V P +KFKVG ++  RVL  + +++  T KK+LV      IL+ + +AT 
Sbjct: 531 PGNHMSDVRLVYPERKFKVGGKVKGRVLRKQGRKLFFTLKKSLVNIEDDEILTGFDKATV 590

Query: 452 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 511
              +   + K   +G  V F+  ++ + P++E+      + S    +GQ V  +I++   
Sbjct: 591 GFKSPATVEKFVHNGAIVSFFGNLRAYLPKNEISETFVNQASDHLKIGQTVNVKILNVNK 650

Query: 512 ASRRINLSF-----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
             +R+ ++      +    + +  DL    S+ + +V      +V+V  +     +G I 
Sbjct: 651 DDQRLMVTLRQSIDLSDSQKATISDLYPGKSITTAIVVEKVKESVIVE-LENSNLRGVIF 709

Query: 567 TEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LPSDA 622
           + HL+D + E    +   +  G + D L++  D +S ++ +SAK SLI +A+Q  +P+  
Sbjct: 710 SGHLSDGNYEQNRSIFKKLPIGDKIDVLVLEKDLKSRSVTVSAKASLIEAAKQDEVPAYF 769

Query: 623 SHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 681
             I   N ++HGY+ ++   G F+ F G+LTG      A D    DLSK +Y  QSV   
Sbjct: 770 KDIKVDNKMLHGYIKSVTNMGLFISFAGKLTGLVLAKYATDKPDEDLSKKFYKYQSVSCR 829

Query: 682 ILDVNSETGRITLSLKQSCCSSTDASFMQE 711
           ++ ++ E  R  LSLK+S  +S D+S  +E
Sbjct: 830 VIRIDEENKRFLLSLKKS-ENSKDSSNTEE 858


>gi|414883925|tpg|DAA59939.1| TPA: hypothetical protein ZEAMMB73_130902 [Zea mays]
          Length = 285

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/278 (71%), Positives = 240/278 (86%), Gaps = 3/278 (1%)

Query: 1526 EERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1585
            EER L++D P+TPD+FE+LVRSSPNSSF+WIKYMA +L +ADVEKAR++AERAL+TI  R
Sbjct: 2    EERALQEDIPQTPDDFEKLVRSSPNSSFIWIKYMATLLDLADVEKARAVAERALKTIIPR 61

Query: 1586 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1645
            EE EKLN+WVAYFNLENEYG+P E+AV KVFQRALQYCDPKK+HLALL +YERTEQ +LA
Sbjct: 62   EEEEKLNVWVAYFNLENEYGSPREDAVKKVFQRALQYCDPKKLHLALLAMYERTEQYELA 121

Query: 1646 DELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAI 1703
            DELL +M K+FK SCK+WL R+Q  LKQ +  E ++A+V RALLSLP  K IKF+SQTAI
Sbjct: 122  DELLDRMTKRFKTSCKIWLCRIQFALKQGKDVEYIKAIVNRALLSLPHRKRIKFLSQTAI 181

Query: 1704 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1763
            LEFK GV + GRS FE IL EYPKRTDLWS+YLDQEIRLGDV++IR LFER   L+LPPK
Sbjct: 182  LEFKCGVPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDVEVIRALFERVTCLTLPPK 241

Query: 1764 KMKFLFKKYLEYEKSVGEE-ERIEYVKQKAMEYVESTL 1800
            KM+FLFKKYL +EKS+G++ ERI+ V+QKA+EYV+S+L
Sbjct: 242  KMQFLFKKYLNFEKSLGKDNERIQLVQQKAIEYVQSSL 279


>gi|380792079|gb|AFE67915.1| protein RRP5 homolog, partial [Macaca mulatta]
          Length = 1431

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 383/1394 (27%), Positives = 650/1394 (46%), Gaps = 153/1394 (10%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIIEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIGSVIEGK 747
            + LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G  ++  
Sbjct: 793  MLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDLV 852

Query: 748  VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL  
Sbjct: 853  VQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLHQ 912

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   ++
Sbjct: 913  DLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAFS 954

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK--- 922
              S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R     
Sbjct: 955  LTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPTRKDSET 1012

Query: 923  ----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
                            KK +  +G +V   +  IKP  + +    G  G IH + + DD 
Sbjct: 1013 VDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDV 1072

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML--- 1011
               +    +  K+G+TVTAR+I      DMK   FL            ELS++PS L   
Sbjct: 1073 PEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRPSELEDG 1128

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1129 HTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1188

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
             L+   ++F +G+A+   V+  +  K  L L L             I    ++    EG+
Sbjct: 1189 VLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE----EGE 1231

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            +  GR+ K+     GL V      +G++    + +  VSD    Y E    PL  +   +
Sbjct: 1232 VAMGRVVKVTPN-EGLTVSFP---FGKIGTVSIFH--VSD---SYSE---TPLEDFVPQK 1279

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D+    +
Sbjct: 1280 VVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQL 1326

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEP 1304
            ++GYV ++   G F  L   +      S++S           K  P GKL+  RVL +  
Sbjct: 1327 LRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHLPEGKLLTARVLRLNH 1386

Query: 1305 LSKRVEVTLKTSDS 1318
                VE++    D+
Sbjct: 1387 QKNLVELSFLPGDT 1400



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 57/337 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 461

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1314 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 151/692 (21%), Positives = 255/692 (36%), Gaps = 129/692 (18%)

Query: 775  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 834
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 835  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 891
             V Q +N I+E VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIIEKVKGNGGVVSL-----SVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQV 288

Query: 892  MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 942
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVRLSL 345

Query: 943  ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 966
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 967  SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1024
                 N+F+   FK G T   RII  S   +     L  LS++ S++             
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQ------YLRY 447

Query: 1025 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRRFHIG 1079
             D+  G  V G V  + +   L+ +   ++  +        P  L +      ++++HIG
Sbjct: 448  HDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLV-------PPMHLADILMKNPEKKYHIG 500

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1139
              V   VL  + E K L + L+          +    D        G I+  R+      
Sbjct: 501  DEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHGFII--RVKDY--- 555

Query: 1140 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1199
              G +V+   ++ G V   EL    + DP   +          Y  GQ VK  VL     
Sbjct: 556  --GCIVKFYNNVQGLVPKHELSTEYIPDPERVF----------YT-GQVVKVAVL----- 597

Query: 1200 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1259
                 + E S    L  +S   SSD     +  G   +K + ++   +V   V   T  G
Sbjct: 598  -----NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDG 650

Query: 1260 CFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
              + +L   + A +  S+LSD     P        G ++  RVL +      V +  K +
Sbjct: 651  LEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGHVLLCRKPA 709

Query: 1317 DSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
               T    +   N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +
Sbjct: 710  LVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTS 768

Query: 1376 IETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
                +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 769  TSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 40.8 bits (94), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 103/211 (48%), Gaps = 26/211 (12%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1248

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1323 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1362

Query: 1376 IETIYRA----GEKVKVKILKVDKEKRRISL 1402
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|410976033|ref|XP_003994430.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Felis catus]
          Length = 1871

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 393/1401 (28%), Positives = 650/1401 (46%), Gaps = 168/1401 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LV+ LP GL+G  +  +  D      +E  A E+ L     LP +F
Sbjct: 81   MRILGCVXEVNELELVVSLPNGLKGFVQVTEICDAYTKKLSEQVAQEEPLKDLARLPELF 140

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  +     E GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 141  SPGMLVRCVVSSVGFT--EGGKKSVKLSLNPKNVNEVLSAEALKPGMLLTGTVSSLEDHG 198

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G ++K G  L  V+  +     VV LS     
Sbjct: 199  YLVDIGVGGARAFLPLQKAQEYIRQKNKGAEMKVGHYLNCVIEEVKGNGGVVGLSIGHSE 258

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +  +G++L+FL++FTG VD  HL      T 
Sbjct: 259  VSTAIATEEQNWTLNNLLPGLVVKAQVQKVTPHGLILNFLSFFTGLVDFMHLDPKKAGTY 318

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVV 283
            + N     + V A +L V P +RAV L+L P  L       R    H+  G + +   V 
Sbjct: 319  FSN-----QTVRACVLCVHPRTRAVRLSLRPIFLQPGRSLTRLSCQHL--GAVLEDVPVQ 371

Query: 284  RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 343
                  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA
Sbjct: 372  SFSSKAGATFRLKDGAL---AYARLSHLSDSKNVFNAEAFKPGNTHKCRIIDYSQMDELA 428

Query: 344  TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 403
               L+ S  E     + D+KPG +VKG V+ +  +G +V+    ++ L P  H+++  I 
Sbjct: 429  LLSLRTSVIEAQYLRYHDIKPGALVKGTVLTIKPYGMLVKVGEQIRGLVPPIHLADILIK 488

Query: 404  KPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 461
             P KK+ +G E+  RVL    ++K++ +T KKTL++SKL  ++ YA+A   L THG+I +
Sbjct: 489  NPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGLQTHGFILR 548

Query: 462  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
            ++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF 
Sbjct: 549  VKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK 608

Query: 522  M--KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
            +   P R        +   V +G LV   V   T + + V V+        +P  HL+DH
Sbjct: 609  LLGDPKREHTGHSQKKRRAVSVGQLVDVKVLEKTKDGLEVAVLPHNVP-AFLPIPHLSDH 667

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S IHP  ++
Sbjct: 668  VANGPLLYHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKSFSEIHPGMLL 727

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 728  IGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQR 787

Query: 692  ITLSLKQSCCSSTDASFMQEHF---LLEEK--IAMLQSSKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D +          LEE+  +  L SS+ +   ++ +   I G V++ 
Sbjct: 788  MLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSSR-DSVLIQTLAEMIPGMVLDL 846

Query: 747  KVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +V E  + G VV F E   V G +   + +  AG  VE G   +A IL++   +  V +S
Sbjct: 847  EVQEVLEDGSVV-FSE-GPVPGLVLRASRYHRAGQEVEPGQKKKAVILNIDMLKLEVHVS 904

Query: 804  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 863
            L    +        NR+A+K K+  E       HQ   AIV+ ++E++ V SL E  H  
Sbjct: 905  LCHDLV--------NRKAKKLKKGSE-------HQ---AIVQHLEESFAVASLVETGHLA 946

Query: 864  GYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKR-- 920
             ++  S  N T +F  ++   GQ V  T+       T    LL ++  +   T    R  
Sbjct: 947  AFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--FLLAVEGPATKRTVRQTRKD 1004

Query: 921  -----------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 963
                             A KK +  +G +V   +  IKP  + +    G  G IH + + 
Sbjct: 1005 SETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHIL 1064

Query: 964  DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML 1011
            DD   V  +  +  K+G+TVTAR+I      DMK   FL            ELS++PS L
Sbjct: 1065 DD-VPVGTSPTAKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSEL 1120

Query: 1012 -----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSA 1063
                 T     S    E+      GQ V  ++  Y V  +W  + I+  ++ ++ +L ++
Sbjct: 1121 EKDGCTALNTHSVSPLEKIKQYQAGQTVICFLKKYNVVKKWLEVEIAPDIRGRIPLLLTS 1180

Query: 1064 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1123
                 L+   ++F IG+A+   V+  +  K  L L L             I    ++   
Sbjct: 1181 LSFKVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE--- 1224

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
             +G++  GR+ K+ +   GL V           F ++  + +      Y E    PL  +
Sbjct: 1225 -KGEVAMGRVVKV-TPKEGLTVSFP--------FGKMGTVSIFHVSDSYSEM---PLEDF 1271

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
               + V+C VL  +  V     + LSLRS     S TN    S   D     +  I+D+ 
Sbjct: 1272 IPQKVVRCYVLSATDHV-----LTLSLRS-----SRTNPETKSKITDA---EINSIQDIQ 1318

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAG 1297
               +++GYVK+V   G    L   +   V L+        SP K+       P GKL+  
Sbjct: 1319 EGQLLRGYVKSVQPHGVLFGLGPSV---VGLAQYPHVSQYSPSKKALYNRYLPEGKLLTA 1375

Query: 1298 RVLSVEPLSKRVEVTLKTSDS 1318
            +VLS+      VE++    D+
Sbjct: 1376 KVLSLNRQKNLVELSFLPGDT 1396



 Score =  293 bits (750), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 149/327 (45%), Positives = 221/327 (67%), Gaps = 5/327 (1%)

Query: 1475 EVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1533
            +V LD   P +   G S +    D+ +   +K ++  +  EK++ E+E+   EE L++  
Sbjct: 1540 DVGLDSLTPALPPRGESSDSEEDDKPQQSTQKRSKKERMLEKQKAEKELSRIEEALMDPG 1599

Query: 1534 -APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1592
              P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN
Sbjct: 1600 RQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLN 1659

Query: 1593 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1652
            +WVA  NLEN YG+P  E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +M
Sbjct: 1660 VWVALLNLENMYGSP--ESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRM 1717

Query: 1653 IKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1711
            +K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ G A
Sbjct: 1718 LKRFRQEKSVWIKYGAFLLRRGQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDA 1777

Query: 1712 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771
            +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+
Sbjct: 1778 ERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKR 1837

Query: 1772 YLEYEKSVGEEERIEYVKQKAMEYVES 1798
            YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1838 YLDYEKQHGTEKDVQAVKAKALEYVEA 1864



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 151/333 (45%), Gaps = 53/333 (15%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
            + V   VL ++   + +RL LRP   Q G S     ++  + Q   H G ++     +  
Sbjct: 322  QTVRACVLCVHPRTRAVRLSLRPIFLQPGRS-----LTRLSCQ---HLGAVLEDVPVQSF 373

Query: 1138 SGVGGLVVQI--GPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
            S   G   ++  G   Y R+ H ++ KN+        ++   F P      G   KC+++
Sbjct: 374  SSKAGATFRLKDGALAYARLSHLSDSKNV--------FNAEAFKP------GNTHKCRII 419

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
            + S+         LSLR+S+                   ++L +  D+ P  +V+G V  
Sbjct: 420  DYSQMDELAL---LSLRTSV----------------IEAQYL-RYHDIKPGALVKGTVLT 459

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            +   G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK
Sbjct: 460  IKPYGMLVKVGEQIRGLVPPIHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK 519

Query: 1315 TS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
             +  +S+  +   I   ++   G    G I RV+ YG  +   N ++ GL    ELS ++
Sbjct: 520  KTLIESKLPA---ITCYADAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSAEY 575

Query: 1373 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            V + E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 576  VPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK 608



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 33/245 (13%)

Query: 871  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 930
            +   K P K+F  GQ++ ATV+  P SS A   L L+                    + G
Sbjct: 1183 FKVLKHPDKKFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEKG 1226

Query: 931  SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
             +    + ++ P E L + F  G  G + I  V+D  S   E    +F   + V   +++
Sbjct: 1227 EVAMGRVVKVTPKEGLTVSFPFGKMGTVSIFHVSDSYS---EMPLEDFIPQKVVRCYVLS 1283

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1045
             ++        +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V     
Sbjct: 1284 ATD-------HVLTLSLRSSR-TNPETKSKITDAEINSIQDIQEGQLLRGYVKSVQPHGV 1335

Query: 1046 LLTISRHLKA-QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1104
            L  +   +     +   S Y PS+   + R    GK +T  VLS+N++K L+ L   P  
Sbjct: 1336 LFGLGPSVVGLAQYPHVSQYSPSKKALYNRYLPEGKLLTAKVLSLNRQKNLVELSFLPGD 1395

Query: 1105 DGISD 1109
             G  D
Sbjct: 1396 TGKPD 1400



 Score = 44.3 bits (103), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             + S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 716  KSFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 774

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 775  VAKVTNVDEEKQRMLLSLRLS 795


>gi|37359824|dbj|BAC97890.1| mKIAA0185 protein [Mus musculus]
          Length = 1866

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 391/1403 (27%), Positives = 651/1403 (46%), Gaps = 162/1403 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 90   MRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLLRLPELF 149

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  LD    E GK+ + LS+    + K LS + ++ GM+LT  V S+EDHG
Sbjct: 150  SPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVSSLEDHG 207

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FL      E     N G   K G  L  VV  +     VV LS +   
Sbjct: 208  YLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSLSVEHSE 267

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+       
Sbjct: 268  VSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE-----PK 322

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
                Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D   V   
Sbjct: 323  KMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGF 382

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  ++ LA  
Sbjct: 383  FKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALL 439

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++  +  P
Sbjct: 440  SLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNP 499

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+  G E+  RVL    ++K++ +T KKTLV SKL +++ Y  A   L THG I +++
Sbjct: 500  EKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPLITCYEGAKPGLQTHGVIIRVK 559

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
             +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ LSF + 
Sbjct: 560  DYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLL 619

Query: 524  PTRVSEDD----------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                 +D            V++G LV   V   T   + V ++    +   +PT HL+DH
Sbjct: 620  SDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPTPHLSDH 678

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
              +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I P  ++
Sbjct: 679  AANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLL 738

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V+    R
Sbjct: 739  IGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQR 798

Query: 692  ITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVIEGK 747
            + LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G V++  
Sbjct: 799  MLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMVLDAV 858

Query: 748  VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V +SL  
Sbjct: 859  VHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEVHVSLHQ 918

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  H + ++
Sbjct: 919  DLVNR-----------KPRKLRKSSR----HQ---GIVQHLEESFAVASLVETGHLVAFS 960

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS----------ETET 915
             +S  N T  F  ++   GQ V  T+       T   L+L ++  +          ++ET
Sbjct: 961  LISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTRMPVQRDSET 1018

Query: 916  SSSK------------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 957
               K                  ++KK+ S  +G  V   I  +K   + +    GF G I
Sbjct: 1019 VDDKGEEKEEEEEEKEEENLTVKSKKRHSLAIGDKVTGTIKAVKATHVVVTLADGFVGCI 1078

Query: 958  HITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSIKP 1008
            H + + DD   V  +  +  K G+ VTAR+I     K++K  P     F   + ELS++P
Sbjct: 1079 HASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSVRP 1137

Query: 1009 SMLTVS----EIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1061
            S L  S       S+   E+      GQ VT +   Y V  +W  + I   ++ ++ +L 
Sbjct: 1138 SELKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDIRGRIPLLL 1197

Query: 1062 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISNDNMQ 1120
            ++     L+   ++F +G+A+   V+  +  +  L L ++ P++                
Sbjct: 1198 TSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR---------------- 1241

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
              + EG++  GR+ K++    GL V       G+V    L +         Y E    PL
Sbjct: 1242 --LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SYSEA---PL 1287

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
              +   + V+C +L  +  V     + LSLRSS     + N       ++ P   +  IE
Sbjct: 1288 EDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP--EINSIE 1334

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-----FPIGKLV 1295
            D+    +++GYVK V      I L   +      S++S+     PEKE      P GKLV
Sbjct: 1335 DVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNGCLPEGKLV 1392

Query: 1296 AGRVLSVEPLSKRVEVTLKTSDS 1318
              +VL V P+   +E++L  SD+
Sbjct: 1393 TAKVLRVNPMKNLIELSLLPSDT 1415



 Score =  279 bits (714), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 138/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)

Query: 1516 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1574
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1577 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1636

Query: 1575 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1634
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1637 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1694

Query: 1635 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1693
            +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +
Sbjct: 1695 IYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1754

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753
            H+  I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1755 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1814

Query: 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1815 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1859



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 138/331 (41%), Gaps = 49/331 (14%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 331  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 390

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 391  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 428

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 429  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 468

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 469  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 528

Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
             +   T+    I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 529  KTLV-TSKLPLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 586

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 587  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 617


>gi|347837370|emb|CCD51942.1| hypothetical protein [Botryotinia fuckeliana]
          Length = 1792

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 408/1513 (26%), Positives = 702/1513 (46%), Gaps = 167/1513 (11%)

Query: 364  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAELVF 417
            PG  V+  ++ V S G   +  G V     L H        E E     KKFK+GA++  
Sbjct: 360  PGTAVETLIVDVSSRGLTGKVMGMVDVTADLMHSGTSVMNQELE-----KKFKIGAKVRG 414

Query: 418  RVLGV----KSKRITVT---HKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKH 465
            RV+        +++ ++   H  +L + +     +     D L     +    I K+E  
Sbjct: 415  RVICTFPNSDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLDTLPLSTIVEEVTIKKVESG 474

Query: 466  -GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL 518
             G FV     G+ GF   S +    ++   E +  Y VG V + R++  +S+     I+L
Sbjct: 475  VGLFVDVGIKGIPGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVLGYNSLDGVYLISL 534

Query: 519  --SFMMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD 572
              S + +P    ED  +K+G +V G V+  +V    V  ++  +A+  S G +P  HLAD
Sbjct: 535  EKSVLEQPYLRIED--LKIGEVVKGKVEKLIVNDKGVGGLLVNLAENIS-GLVPETHLAD 591

Query: 573  -HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 630
              L H    +   K G     ++L  D     + L+ K +L+NS          I     
Sbjct: 592  IQLLHP---EKKFKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESPALVSYDDITVGMQ 648

Query: 631  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
              G + NI+ TG  V+F G + GF P S+  +    D ++ + +GQ V  ++L V+ E  
Sbjct: 649  SPGTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAK 708

Query: 691  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 750
            ++T+S K             ++  + E ++ L   K N      ++G  + +++      
Sbjct: 709  KLTVSCKDPSVFGLAQQNALKNLKIGEIVSALVIEKSNDDISVEIQGLGLKAILP----- 763

Query: 751  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFI 809
                G +    E+     F          +  G V+   A+LD  + +RL+ L+ K   +
Sbjct: 764  ---VGHLTDGSENKSRSSF--------KNIRVGQVLSDLAVLDKLEPKRLIVLTNKPALV 812

Query: 810  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS-------------L 856
                     + AQ K   R    D+   +TV+  V+ +    + +              +
Sbjct: 813  ---------KAAQNKTLLR-MFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNKI 862

Query: 857  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 916
            PE N  +       Y T +       +GQ      MA  +S       L   A  E    
Sbjct: 863  PEKNLRLPDFGFKKYQTIEVKVLTIDHGQRRFLLSMADATSDKKSNEPLAPGANQEAVNP 922

Query: 917  SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLF 974
              +  K      +G L +A ++ +K  ++ ++      GRI +++  D  S++   +   
Sbjct: 923  IDETIKSIEDITLGRLTKARVSSVKDTQVNVQLADNIQGRIDVSQAFDSWSDIKSKKQPL 982

Query: 975  SNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEEC 1025
              F   Q V  R++   +  + +         K+ ++ELS KPS  T S      L +  
Sbjct: 983  KTFSPKQIVDVRVLGIHDARNHRFLPISHRSGKTLVFELSAKPSDQTESAQDPVSLDK-- 1040

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
             + +G     +V  V  +   + IS +++ ++  LD + + S L++    F IG A+  H
Sbjct: 1041 -IKVGSSWLAFVNNVGVDCLWVNISPNVRGRISALDVSDDVSLLKDLAANFPIGSAIRVH 1099

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGL 1143
            V  ++ E   L L  R  QD               TF  + +G IV G+++++      +
Sbjct: 1100 VKGVDVETNRLDLSARSSQDS-----------EALTFDKLSQGMIVPGKVTRV--NERQV 1146

Query: 1144 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1203
            +VQ+   +   ++ T+L +          D  + DP S Y +   V+  V +I    +  
Sbjct: 1147 MVQLTDSISAPINLTDLCD----------DYSEADP-SKYSKNDIVRVCVTDIDVPNK-- 1193

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
              V LS R+S    SS    D           +  I  L  N IV+G+VK+V  KG F+ 
Sbjct: 1194 -RVRLSTRASRVMNSSAAVQD---------PEISSISQLKVNDIVRGFVKHVADKGLFVN 1243

Query: 1264 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTA 1321
            L   + A V +S+LSD Y++  + EF + +LV G+V  V+ +   V+++LK S  D    
Sbjct: 1244 LGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLSLKPSVIDKDYV 1303

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1380
            +    N++    V  +V G+I++VE +G+FI ++ + N+ GLCH SE++E  V +++ +Y
Sbjct: 1304 APLTFNDI---QVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLY 1360

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1440
              G+ VK  +LK+D EK+RIS  MK+S+F+ D +     S+++  + ++           
Sbjct: 1361 SEGDAVKAIVLKMDTEKKRISFSMKASHFE-DGNESDDESDDDGVDGVKLDSMDIDDDDD 1419

Query: 1441 ENSSVA-------VQDMDMESEDGGSLVLAQIE---SRASVPPLEVNLDDEQPDMDNGIS 1490
            ++           VQD++  +EDG     +  E   +   VP L     D   D+   + 
Sbjct: 1420 DDDDSEGGIDLDDVQDLESAAEDGDEASDSDEEMPDAEGDVPALSAGGFDWSADL---LD 1476

Query: 1491 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1550
            Q  G ++    +D  +    +K +K++R+ EI+      L+ + P++  +FERL+   P+
Sbjct: 1477 QADGQSN----VDSDDEGTEEKPKKKKRKAEIKVDRTGDLDANGPQSISDFERLLLGQPD 1532

Query: 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610
            SS +W +YMAF + ++++ KAR IAERA++TIN+REE EKLNIW+A  NLE  YG+  +E
Sbjct: 1533 SSSLWTQYMAFQMQLSELGKAREIAERAIKTINMREETEKLNIWLALLNLEIAYGS--DE 1590

Query: 1611 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1670
             V  VF+RA QY D ++VH  L  +Y ++ +NK ADEL   + KKF  S  VW+     L
Sbjct: 1591 TVEAVFKRACQYNDAQEVHERLASIYIQSGKNKKADELFQALTKKFSQSPTVWVNYAHFL 1650

Query: 1671 LKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYP 1726
                   +  +A++ RA  SLP H H+    + A LEF++  G  +RGR++FEG+L+++ 
Sbjct: 1651 FNTLGAPDRGRALLPRATQSLPPHTHLPLTLKFAALEFRSEHGSPERGRTIFEGVLAKWS 1710

Query: 1727 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERI 1785
            KR D+W   LD EI+ GD  ++RG+FER   +  L PK     FK++ E+E++ G+++  
Sbjct: 1711 KRLDIWGQLLDLEIKAGDKSIVRGVFERVARIKGLKPKGAMGWFKRWTEWEEANGDKKSQ 1770

Query: 1786 EYVKQKAMEYVES 1798
            E V+  A E+V +
Sbjct: 1771 EKVRAIAEEWVRN 1783



 Score =  207 bits (527), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 194/711 (27%), Positives = 318/711 (44%), Gaps = 61/711 (8%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL-------------LPT 51
           G V+++N  D+ + LP  L G        D + +                       L  
Sbjct: 156 GQVSQINATDIALSLPNNLTGYVPITAISDKVTERVEAIAAAEEDDADDEVEVEDIDLKK 215

Query: 52  IFHVGQLVSCIVLQLDDDKKEI----GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
           IF +GQ +   V+   DD        GKR+I LSLR      G++ + +     L A V 
Sbjct: 216 IFSLGQYLRAYVVSTSDDTNTATLGKGKRRIELSLRPQHANNGVTPQNLINNTTLMASVT 275

Query: 108 SIEDHGYILHFGL--PSFTGFLPRNNLA-ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 164
           S+EDHG I++ GL      GF+   ++  E    DV+ G +   +V  +    K V L +
Sbjct: 276 SVEDHGLIMNIGLEDTGIRGFMGAKDIGYEVVLADVQEGAVFLCMVTGLSSNGKTVKLCA 335

Query: 165 DPDTVSKCVTKD--LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 222
           D   +      +      ++D  +PG  V T +  +   G+    +     T D+ H   
Sbjct: 336 DTQKIGNVKKSNYLTDAPTVDAFLPGTAVETLIVDVSSRGLTGKVMGMVDVTADLMHSGT 395

Query: 223 TFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPY---LLHNRA--------PPS 269
           +      +  +    KV  R++   P S  + +G++L  +   L   +A        P  
Sbjct: 396 SVMNQELEKKFKIGAKVRGRVICTFPNSDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLD 455

Query: 270 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEG 326
            + +  I ++  + +V+ G+GL +D+    +  P +V IS V + ++  LE+    YK G
Sbjct: 456 TLPLSTIVEEVTIKKVESGVGLFVDVGIKGI--PGFVHISRVKDGKIETLEETTGPYKVG 513

Query: 327 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---IAVDS--FGAI 381
           S  R R+LG+  L+G+    L+ S  E       D+K G VVKGKV   I  D    G +
Sbjct: 514 SVHRGRVLGYNSLDGVYLISLEKSVLEQPYLRIEDLKIGEVVKGKVEKLIVNDKGVGGLL 573

Query: 382 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSK 439
           V     +  L P  H+++ +++ P KKFK G  +  RVL      ++I +T KKTLV S+
Sbjct: 574 VNLAENISGLVPETHLADIQLLHPEKKFKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSE 633

Query: 440 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 499
              L SY + T  + + G I  I   G  V+FY  V+GF P SE+      +P+  + +G
Sbjct: 634 SPALVSYDDITVGMQSPGTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIG 693

Query: 500 QVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 553
           QVV   ++   P ++++ +S      F +      ++  +K+G +VS +V   + + + V
Sbjct: 694 QVVNVHVLKVDPEAKKLTVSCKDPSVFGLAQQNALKN--LKIGEIVSALVIEKSNDDISV 751

Query: 554 YVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDN-ESSNLL-LSAKYS 610
            +   G  K  +P  HL D  E+ +      I+ G     L VLD  E   L+ L+ K +
Sbjct: 752 EIQGLGL-KAILPVGHLTDGSENKSRSSFKNIRVGQVLSDLAVLDKLEPKRLIVLTNKPA 810

Query: 611 LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
           L+ +AQ   L      +     VHG+V NI  T  FV+F G LTG  P++K
Sbjct: 811 LVKAAQNKTLLRMFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNK 861



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 22/277 (7%)

Query: 174  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 233
            ++D + ++ D L  GM+V  +V  + E  VM+      +  +++  L + +   +  + Y
Sbjct: 1117 SQDSEALTFDKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEAD-PSKY 1175

Query: 234  NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVR 284
            +++  V   +  +D  ++ V L+     + N +           S +KV DI        
Sbjct: 1176 SKNDIVRVCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHV 1235

Query: 285  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 344
             D+GL + L    T     AYV ISD+++  ++  + +++    V+ ++     +     
Sbjct: 1236 ADKGLFVNLGGNVT-----AYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQ 1290

Query: 345  GILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSE 399
              LK S  +       T +D++   VV GK+  V+ FG  +   G   V  LC    M+E
Sbjct: 1291 LSLKPSVIDKDYVAPLTFNDIQVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAE 1350

Query: 400  FEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 434
              +    K +  G  +   VL + +  KRI+ + K +
Sbjct: 1351 KRVHDVKKLYSEGDAVKAIVLKMDTEKKRISFSMKAS 1387



 Score = 43.9 bits (102), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 102/490 (20%), Positives = 189/490 (38%), Gaps = 64/490 (13%)

Query: 93   LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQG 148
             + V+E   +  +VK+I      + FG    TG LP+N + E +        K    ++ 
Sbjct: 824  FDDVKEKKTVHGFVKNITLTAVFVQFG-GGLTGLLPKNKIPEKNLRLPDFGFKKYQTIEV 882

Query: 149  VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG--------------ISIDLLVPGMMVSTR 194
             V +ID  ++   LS    T  K   + L                 SI+ +  G +   R
Sbjct: 883  KVLTIDHGQRRFLLSMADATSDKKSNEPLAPGANQEAVNPIDETIKSIEDITLGRLTKAR 942

Query: 195  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARILFVD--- 247
            V S+ +  V +       G +D+    +++     K      ++  + V+ R+L +    
Sbjct: 943  VSSVKDTQVNVQLADNIQGRIDVSQAFDSWSDIKSKKQPLKTFSPKQIVDVRVLGIHDAR 1002

Query: 248  -----PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 302
                 P S   G TL   +    A PS  +     D   + ++  G   L  + +  V  
Sbjct: 1003 NHRFLPISHRSGKTL---VFELSAKPSD-QTESAQDPVSLDKIKVGSSWLAFVNNVGVDC 1058

Query: 303  PAYVTIS----------DVAEEE--VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
              +V IS          DV+++   ++ L   +  GS +RV + G   +E     +   S
Sbjct: 1059 -LWVNISPNVRGRISALDVSDDVSLLKDLAANFPIGSAIRVHVKGV-DVETNRLDLSARS 1116

Query: 351  AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVKPGKKF 409
            + +    T   +  GM+V GKV  V+    +VQ    + A   L  +  ++    P K  
Sbjct: 1117 SQDSEALTFDKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEADPSKYS 1176

Query: 410  KVGAELVFRV----LGVKSKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWIT 460
            K     + RV    + V +KR+ ++ + + V +  A      +SS ++     I  G++ 
Sbjct: 1177 K---NDIVRVCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVK 1233

Query: 461  KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             +   G FV     V  +   S+L      +  S + V Q+VK ++         + LS 
Sbjct: 1234 HVADKGLFVNLGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLS- 1292

Query: 521  MMKPTRVSED 530
             +KP+ + +D
Sbjct: 1293 -LKPSVIDKD 1301


>gi|156845672|ref|XP_001645726.1| hypothetical protein Kpol_1043p58 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116393|gb|EDO17868.1| hypothetical protein Kpol_1043p58 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1725

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 361/1206 (29%), Positives = 587/1206 (48%), Gaps = 162/1206 (13%)

Query: 642  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701
            GC V F G ++GF P ++  +       +   +GQ++   +L V  E  RI ++    C 
Sbjct: 625  GCVVSFFGGISGFLPNTEISEAFVKRPEEHLRLGQTILVKLLQVEKERSRIIVT----CK 680

Query: 702  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 759
             S D +  Q+     E I  L   K       +VE  +I    +  V E    G+  VV 
Sbjct: 681  VSNDKADSQK-----ETIEKLIPGKS------FVEASVIEKTKDSLVVEMEKTGLRGVVY 729

Query: 760  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
                SD+   I  ++     V  GS +   ++D      + +++LK   I   ++A   +
Sbjct: 730  VGHLSDLR--IEQNRAEIKKVRIGSKLNGLVIDKDTRTYIFNMTLKESLI---KDAKEGK 784

Query: 820  QAQKKKRKREASKDLGVHQTVNAIVE---IVKEN--YLVLSLPEY---NHSIGYASVSDY 871
                    +   K   +H  V ++ +    V  N  ++ L LP Y   N  I +      
Sbjct: 785  LPTSYSEVKTLDKSTPLHGYVKSVSDKGIFVAFNGKFVGLVLPSYAVENREIDF------ 838

Query: 872  NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS-------ETETSS----SKR 920
                  +K F   QSV A +  L +     R LL LK           T+T++       
Sbjct: 839  ------KKSFYMNQSVTAYI--LRTDDEQERFLLTLKEPKTKEKKKTSTDTAAINPIDSS 890

Query: 921  AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFK 978
             K  S + VGS+V+ +I  +K  +L +      HGR+ I EV D+ +++ +     SNFK
Sbjct: 891  IKDLSDFRVGSIVEGKIKGVKKNQLNIILADNLHGRVDIAEVFDNFADIKDKQQPLSNFK 950

Query: 979  IGQTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1028
             G  +  +I+     KS K       ++K S L ELSIKPS L  S+I    + E   V 
Sbjct: 951  SGDLIKVKILGHHDVKSYKFLPISHSNLKNSVL-ELSIKPSELKSSKINIPSIDE---VK 1006

Query: 1029 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1088
            I   +TG++     +   LT+S  LKA+L + + + + S     +  F +G A+  HV S
Sbjct: 1007 IDSELTGFINNFAKDCVWLTVSPILKAKLPLFELSDDGSRFSAIEDSFPLGTALRVHVTS 1066

Query: 1089 INKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1147
            ++K    + +  R      I D  VD             DI+  RI K+      +++ +
Sbjct: 1067 VDKTHNFVTVSNRSKSVKSIDDVNVD-------------DILPARIIKVNDNY--VLLDL 1111

Query: 1148 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE--GQFVKCKVLEISRTVRGTFH 1205
            G  + G + F       ++D L+ +     D    YD+   + V  KV+ I R  +    
Sbjct: 1112 GHKITG-ISF-------ITDALNDFSSSLHDE---YDDKLNEMVSAKVISIDRETK---K 1157

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            + LSL++         +S++          L+  EDL    +V+  +KNVT KG F+ LS
Sbjct: 1158 INLSLQNE-------KASNM---------KLKSHEDLKQKDVVKAIIKNVTEKGIFVYLS 1201

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              L+A V +S LSD Y++  +K +   + V G+V+S +  S  + +TL+ S+        
Sbjct: 1202 SALEAFVPVSKLSDSYLKDWKKFYKPMQSVIGKVISCDDNS-HILLTLRESEV-NGELKV 1259

Query: 1326 INNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGE 1384
            +   S++ VGDI  G IK V  +G+F+ ++NT N+ GL H +E+++   +N+ +I+  G+
Sbjct: 1260 LKGYSDIKVGDIFNGNIKNVTDFGVFVKLDNTVNVSGLAHRTEIADTVPENLSSIFGVGD 1319

Query: 1385 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSS 1444
            +VK  +LK + EK++ISLG+K+SYF +        S+ ESDE  +EV             
Sbjct: 1320 RVKAIVLKTNPEKQQISLGLKASYFTSAKSKENSDSDLESDE--DEV------------- 1364

Query: 1445 VAVQDMDMESEDGGSLVLAQIESRASVPP-------LEVNLDDEQPDMDNGISQNQGHTD 1497
              + D++   E      +   E ++S  P       L    D     ++   S +    +
Sbjct: 1365 --MADVNYNEESEDEAEIDDEEPKSSKTPMTTDGLSLSAGFDWTANILNQAQSDDDLEDE 1422

Query: 1498 EAKTIDEKNNRHAKKKEK--EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1555
                 + K ++H + K K  E++  +I A         AP +  +FERL+  +PNSS +W
Sbjct: 1423 MEDFTEVKRSKHKRSKTKIIEDKTIDINAR--------APESVSDFERLIVGNPNSSVIW 1474

Query: 1556 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1615
            + YMAF L +++++KAR IAERAL+TIN REENEKLNIW+A  NLEN +G   EE +  V
Sbjct: 1475 MNYMAFRLQLSEIDKAREIAERALKTINFREENEKLNIWIAMLNLENTFGT--EETLEDV 1532

Query: 1616 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLL--K 1672
            F+R+ QY D   +H  LL +Y+ +E+   A EL     KKF      VW+   + L+  K
Sbjct: 1533 FKRSCQYMDSFTMHNKLLSIYQMSEKLDKAAELFKATSKKFGSEKVSVWVSWGEFLINNK 1592

Query: 1673 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1732
            Q QE  ++V+  AL SLP+  H++ + + A LEF  G  +RGRS+FEG++++ PKR D+W
Sbjct: 1593 QAQEA-RSVLASALKSLPKRNHVELVRKFAQLEFAKGDPERGRSLFEGLIADAPKRIDIW 1651

Query: 1733 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1792
            ++Y+DQEI++G+      LFER I+  +  K+ KF F K+L++E+S  +E+ + YVK KA
Sbjct: 1652 NVYIDQEIKIGEKKKAEDLFERVINRKITRKQAKFFFNKWLQFEESQNDEKTVSYVKAKA 1711

Query: 1793 MEYVES 1798
             E+ E+
Sbjct: 1712 TEFAEN 1717



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 293/1243 (23%), Positives = 524/1243 (42%), Gaps = 150/1243 (12%)

Query: 49   LPTIFHVGQLVSCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
            L   F +GQ + C V     L+   K+  K+KI LS+  S++   L+ E + +   +   
Sbjct: 209  LRNYFKIGQWLRCSVSANTALETQSKKNKKKKILLSIEPSVV-NILTEEDLNKSTTVQCS 267

Query: 106  VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 165
            VKSIEDHG  L  G+   TGF+ + +       ++KPG +  G +        VV L+  
Sbjct: 268  VKSIEDHGAALDLGIEGITGFISKKDYLNFD--ELKPGFVFLGNIAKKSGRSVVVNLNFS 325

Query: 166  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 225
            P      ++      SID ++PG  V    +S+   G+         G +   HL  TF 
Sbjct: 326  PKNKVSQIS------SIDAVIPGQSVDLLCESVQPTGITGKVYGLVPGFISNVHLH-TFD 378

Query: 226  TTNWKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYL------LHNRAPPSHVKVGDI 276
                K+ Y     V  RIL         + + ++  P++      LH          G  
Sbjct: 379  REEIKHKYAIGSNVQGRILASLNNKNGDKVLIISTLPHITSLENKLHEIENLEAFPFGYT 438

Query: 277  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 336
            +D + +   D    L L +    +    +  I +  E E             +  R+LG+
Sbjct: 439  FDSASIKGRDSEY-LYLALDEDRIGEVHHSKIGNAFESE------------KISARVLGY 485

Query: 337  RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPL 394
              ++ +          +      +D+K G ++ G ++++V S G  ++ F     A  P 
Sbjct: 486  NSIDNVFQLSTDPETLKLKYVRAADIKIGELLTGCEIVSVSSKGIQLKIFNNQFSAFVPP 545

Query: 395  PHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV---KSKLAILSSYAEAT 450
             H+S+  +V P +KFK+G+++  RVL V  +  I VT KKTLV   +++  +L SY  A 
Sbjct: 546  IHISDTRLVYPERKFKIGSKIKGRVLSVDFRGHILVTLKKTLVNAEENETPLLDSYKAAQ 605

Query: 451  ----DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 506
                    T   +   + +GC V F+ G+ GF P +E+       P     +GQ +  ++
Sbjct: 606  TIKDSNSKTTATVQYFKPNGCVVSFFGGISGFLPNTEISEAFVKRPEEHLRLGQTILVKL 665

Query: 507  MSSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 561
            +       RI ++  +   +        + L+   S V   V   T +++VV +   G  
Sbjct: 666  LQVEKERSRIIVTCKVSNDKADSQKETIEKLIPGKSFVEASVIEKTKDSLVVEMEKTGL- 724

Query: 562  KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ- 617
            +G +   HL+D  +E        ++ G + +  LV+D ++   +  ++ K SLI  A++ 
Sbjct: 725  RGVVYVGHLSDLRIEQNRAEIKKVRIGSKLNG-LVIDKDTRTYIFNMTLKESLIKDAKEG 783

Query: 618  -LPSDASHIHP---NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 673
             LP+  S +     ++ +HGYV ++ + G FV F G+  G    S AV+ +  D  K++Y
Sbjct: 784  KLPTSYSEVKTLDKSTPLHGYVKSVSDKGIFVAFNGKFVGLVLPSYAVENREIDFKKSFY 843

Query: 674  VGQSVRSNILDVNSETGRITLSL-----KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
            + QSV + IL  + E  R  L+L     K+   +STD +           I  + SS   
Sbjct: 844  MNQSVTAYILRTDDEQERFLLTLKEPKTKEKKKTSTDTA----------AINPIDSS--- 890

Query: 729  GSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGA 778
               +K +  F +GS++EGK+   + N   ++++   H         D +  I   Q   +
Sbjct: 891  ---IKDLSDFRVGSIVEGKIKGVKKNQLNIILADNLHGRVDIAEVFDNFADIKDKQQPLS 947

Query: 779  TVESGSVIQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 835
              +SG +I+  IL   DV         S K + I      NS  +   K  + ++SK   
Sbjct: 948  NFKSGDLIKVKILGHHDVK--------SYKFLPISHSNLKNSVLELSIKPSELKSSK--- 996

Query: 836  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP 895
                + +I E+  ++ L   +  +     + +VS     K P  +  +  S  + +    
Sbjct: 997  --INIPSIDEVKIDSELTGFINNFAKDCVWLTVSPILKAKLPLFELSDDGSRFSAIEDSF 1054

Query: 896  SSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGSLVQAEITEIKPLELRLKFGIG 952
               TA R+ +     +    + S R+K   S D   V  ++ A I ++    + L  G  
Sbjct: 1055 PLGTALRVHVTSVDKTHNFVTVSNRSKSVKSIDDVNVDDILPARIIKVNDNYVLLDLGHK 1114

Query: 953  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1012
              G   IT+  +D S+ + + + + K+ + V+A++I  S   + KK     LS++    +
Sbjct: 1115 ITGISFITDALNDFSSSLHDEYDD-KLNEMVSAKVI--SIDRETKK---INLSLQNEKAS 1168

Query: 1013 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1072
              ++ S    ++ DV     V   +  V  +   + +S  L+A  F+  S    S L+++
Sbjct: 1169 NMKLKSHEDLKQKDV-----VKAIIKNVTEKGIFVYLSSALEA--FVPVSKLSDSYLKDW 1221

Query: 1073 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1132
            ++ +   ++V G V+S +    +L L LR  +     K +   +D     I  GDI  G 
Sbjct: 1222 KKFYKPMQSVIGKVISCDDNSHIL-LTLRESEVNGELKVLKGYSD-----IKVGDIFNGN 1275

Query: 1133 ISKILSGVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1190
            I  +     G+ V++    ++ G  H TE+ +  V + LS          S +  G  VK
Sbjct: 1276 IKNVTD--FGVFVKLDNTVNVSGLAHRTEIAD-TVPENLS----------SIFGVGDRVK 1322

Query: 1191 CKVLEISRTVRGTFHVELSLRSSL--DGMSSTNS-SDLSTDVD 1230
              VL   +T      + L L++S      S  NS SDL +D D
Sbjct: 1323 AIVL---KTNPEKQQISLGLKASYFTSAKSKENSDSDLESDED 1362


>gi|47124316|gb|AAH70468.1| Programmed cell death 11 [Mus musculus]
          Length = 1862

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 391/1405 (27%), Positives = 655/1405 (46%), Gaps = 164/1405 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 84   MRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLLRLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  LD    E GK+ + LS+    + K LS + ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FL      E     N G   K G  L  VV  +     VV LS +   
Sbjct: 202  YLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSLSVEHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+       
Sbjct: 262  VSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE-----PK 316

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
                Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D   V   
Sbjct: 317  KMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  ++ LA  
Sbjct: 377  FKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++  +  P
Sbjct: 434  SLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+  G E+  RVL    ++K++ +T KKTLV SKL++++ Y  A   L THG I +++
Sbjct: 494  EKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 522
             +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ LSF ++
Sbjct: 554  DYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLL 613

Query: 523  KPTRVSEDDL---------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
              +R  +  +         V++G LV   V   T   + V ++    +   +PT HL+DH
Sbjct: 614  SDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPTPHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
              +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I P  ++
Sbjct: 673  AANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V+    R
Sbjct: 733  IGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQR 792

Query: 692  ITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVIEGK 747
            + LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G V++  
Sbjct: 793  MLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMVLDAV 852

Query: 748  VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V +SL  
Sbjct: 853  VHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEVHVSLHQ 912

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  H + ++
Sbjct: 913  DLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETGHLVAFS 954

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS----------ETET 915
             +S  N T  F  ++   GQ V  T+       T   L+L ++  +          ++ET
Sbjct: 955  LISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTRMPVQRDSET 1012

Query: 916  SSSK--------------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 955
               K                    ++KK+ S  +G  V   I  +K   + +    GF G
Sbjct: 1013 VDDKGEEKEEEEEEEEKEEENLTVKSKKRHSLAIGDKVTGTIKAVKATHVVVTLADGFVG 1072

Query: 956  RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSI 1006
             IH + + DD   V  +  +  K G+ VTAR+I     K++K  P     F   + ELS+
Sbjct: 1073 CIHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSV 1131

Query: 1007 KPSMLTVS----EIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFI 1059
            +PS L  S       S+   E+      GQ VT +   Y V  +W  + I   ++ ++ +
Sbjct: 1132 RPSELKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDIRGRIPL 1191

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISNDN 1118
            L ++     L+   ++F +G+A+   V+  +  +  L L ++ P++              
Sbjct: 1192 LLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR-------------- 1237

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
                + EG++  GR+ K++    GL V       G+V    L +         Y E    
Sbjct: 1238 ----LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SYSEA--- 1281

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
            PL  +   + V+C +L  +  V     + LSLRSS     + N       ++ P   +  
Sbjct: 1282 PLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP--EINS 1328

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-----FPIGK 1293
            IED+    +++GYVK V      I L   +      S++S+     PEKE      P GK
Sbjct: 1329 IEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNGCLPEGK 1386

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDS 1318
            LV  +VL V P+   +E++L  SD+
Sbjct: 1387 LVTAKVLRVNPMKNLIELSLLPSDT 1411



 Score =  278 bits (711), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 137/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)

Query: 1516 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1574
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1573 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1632

Query: 1575 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1634
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1633 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1690

Query: 1635 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1693
            +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +
Sbjct: 1691 IYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1750

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753
            H+  I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1751 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1810

Query: 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA++YVE+
Sbjct: 1811 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALDYVEA 1855



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
             +   T+  S I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 523  KTLV-TSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 581  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611


>gi|121716713|ref|XP_001275889.1| rRNA biogenesis protein RRP5, putative [Aspergillus clavatus NRRL 1]
 gi|119404046|gb|EAW14463.1| rRNA biogenesis protein RRP5, putative [Aspergillus clavatus NRRL 1]
          Length = 1819

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 355/1336 (26%), Positives = 661/1336 (49%), Gaps = 144/1336 (10%)

Query: 533  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGAVVKGKIEKLLIGPTGVDGLIVALADGIT-GLVPSMHFADAALQFPEKK--FREGM 610

Query: 589  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
                ++L ++ ++  + L+ K SL+NS   +  D   I P +   G + NI   G  V+F
Sbjct: 611  AITARILSVNLQNRQIRLTLKKSLLNSESAIWKDYEDIVPGAQSPGTIVNIQPHGAVVQF 670

Query: 648  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAFIKDPSQHFRQGQVVNVHALSVDPSLGKLAVSCKDP------ST 724

Query: 708  FMQEHFLLEEKI--AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
            F + +    EKI   ML            V G +     +  + + ++FG+V   +    
Sbjct: 725  FTESYKKAFEKIQPGML------------VTGTVFEKSADDLLLKLDEFGLVARLDLAHV 772

Query: 766  VYGFITHHQLAGATVESGSVIQ-AAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 824
            V G         + +  G  +    +LD+ +A RL+ +S +           S ++A K+
Sbjct: 773  VDGSYPKQSSTLSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKASKQ 822

Query: 825  KRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN 883
                   +D+     V   V  I  +   V  L      +    +++ +  K P    + 
Sbjct: 823  GSLPAKFEDVQEGTEVTGFVRNITADGLFVEFLGGITGLVPKRLLAEESASK-PDYGMVK 881

Query: 884  GQSVIATVMAL------------PSS-STAGRLLLLLKAISETETSSS---KRAKKKSSY 927
             Q V ATV ++            PS  ++AG      K     +  ++   +  +  S +
Sbjct: 882  SQIVTATVHSVDADFRRFILSMNPSELTSAGPKKPAPKPTPSNDAVANAVDESIEAMSDF 941

Query: 928  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTA 985
              G  V+ ++  +K  ++ ++      GRI ++EV D+  ++ +       F+  Q ++A
Sbjct: 942  TFGRTVKCKVVSVKATQVNVQLADNVQGRIDVSEVFDEWEDIKDRKQPLRFFRPKQIISA 1001

Query: 986  RIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1036
            RI+   +  + K         K  ++ELSIKPS L  S   + L  E+  V  G    G+
Sbjct: 1002 RILGIHDARNHKFLPISHRSGKFPVFELSIKPSFLEASN-PTPLNLEQ--VQTGSSWLGF 1058

Query: 1037 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1096
            +  + ++   + +S +++ +L  +D++ + S L + ++ F IG A+  HV +++ EK  L
Sbjct: 1059 INNIADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKHFPIGSALKVHVTAVDTEKGRL 1118

Query: 1097 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1156
             L  +   D +S   + +           G +V GR++K+      +++Q+   + G V+
Sbjct: 1119 DLAAKQRSDKLSFSDITV-----------GMVVPGRVTKVTEK--QVIMQLSDSIVGAVN 1165

Query: 1157 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1216
              +L +          D  + DP + Y++ + ++  V+ + +  +    + LSLR S   
Sbjct: 1166 LIDLSD----------DYSKADP-TVYNKNEVLRACVVGVDKANK---KISLSLRPSKVL 1211

Query: 1217 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1276
             SS +  D           +  ++ L  N +V+G+VK V   G F+ L   + A V +S+
Sbjct: 1212 SSSLSVQD---------PEITSMKQLKVNDVVRGFVKRVADSGLFVALGHDVTAYVRVSD 1262

Query: 1277 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1336
            LSD Y++  +  F + +L+ GR+  V+P   R+++TLK S      ++ +  +++L VG 
Sbjct: 1263 LSDSYLKEWKDSFQVDQLIKGRITLVDPEQGRLQMTLKESALDPNYKAPVT-INDLKVGQ 1321

Query: 1337 IVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1395
            IV G++++VE +G FI ++ + N+ GLCH SE+++  V+N + +Y  G+ VK KI+K+D+
Sbjct: 1322 IVTGKVRKVEEFGAFIVVDRSANISGLCHRSEMADKRVENAKALYEEGDVVKAKIIKIDR 1381

Query: 1396 EKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1455
            ++ +IS  +K+S+F++D ++   S E++  + +   G  +      +S    ++ D +  
Sbjct: 1382 DQGKISFSLKASHFRDDDEDESGSDEDDVSQGVSLDGMEDVDFEGSDSDDDDEEGDDDES 1441

Query: 1456 DGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN--------QGHTDEAKTIDEKNN 1507
             GG  +    +         V +D+   +   G+ +         +   DEA   D ++ 
Sbjct: 1442 MGGVDLEDDSDDDEDDEDSNVEMDNAPSNRKGGLGEAGFDWSGNVRDEEDEAARSDSEDE 1501

Query: 1508 RHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD 1567
              +++K+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +
Sbjct: 1502 DDSRRKKKKNRKPEIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLQYMAFQLELGE 1561

Query: 1568 VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1627
            +EKAR IAERAL+TI++ ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++
Sbjct: 1562 LEKAREIAERALRTISLGQDTEKLNIWVALLNLENTYGN--DDTLEEVFKRACQYNDTQE 1619

Query: 1628 VHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQR 1684
            ++  L  +Y ++ +N+ AD+L    + KK  ++ K +L     L       E  + ++ R
Sbjct: 1620 IYDRLTSIYIQSGKNEKADDLFRTALKKKISNTPKFFLNYASFLFDSMAAPERGRGLLPR 1679

Query: 1685 ALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1742
            AL SLP H H++  S+ A LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI+ 
Sbjct: 1680 ALQSLPSHTHVETTSKFAQLEFRSPNGDIERGRTVFEGLLSSFPKRIDLWNVLLDLEIKN 1739

Query: 1743 GDVDLIRGLFERAISL---------------SLPPKKMKFLFKKYLEYEKSV-----GEE 1782
            GD + +R LFER + +                L PK+ +F+FKK+L +E+ +     G  
Sbjct: 1740 GDAEQVRRLFERVLGIRDVRKGAAAPLDASKKLRPKQARFMFKKWLTFEEKLAADNGGNV 1799

Query: 1783 ERIEYVKQKAMEYVES 1798
            + +E +K KA +YV+S
Sbjct: 1800 KMVEEIKAKAADYVKS 1815



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 184/758 (24%), Positives = 335/758 (44%), Gaps = 66/758 (8%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA----NEDN------------- 47
           G V+ +N  ++ + LP  L G   +  A+  +L+++IE     NE               
Sbjct: 162 GQVSSINAHNIGLSLPNNLTGYV-SLTAISKVLEDKIEKILNDNEKEGSDAEDESDDEDS 220

Query: 48  -LLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 103
             L   F++GQ +   V+ +     D     K++I L++       GL+   ++    + 
Sbjct: 221 LDLKNYFYLGQYLRAYVVSVGSNSADAPSKNKKRIELTIDPRQTNTGLAKTDLELNTAVQ 280

Query: 104 AYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVV 160
           A V S+EDHG ++  G+   +  GF+    +  N+    +K G +   ++   +    VV
Sbjct: 281 ASVVSVEDHGLVMDLGIEGANVKGFMSSKEIDFNTKYSSIKEGSVFLCMITGQNANGSVV 340

Query: 161 YLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 218
            LS++  +              +I+  +PG      +  +  +G++   +     TVD+ 
Sbjct: 341 KLSANLQSAGSIRKSHYLSTASTINSFLPGTAAEILLTDVSSSGLIGKIMGMLDATVDLV 400

Query: 219 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH----NRAPPSH-- 270
                    +    +    K+  RI+   P+S    VG +L  ++L        P +   
Sbjct: 401 QSGANSGKEDLAKKFQIGAKIKGRIVCTFPSSTPFKVGFSLLDHVLRFATEGHGPGTSED 460

Query: 271 -VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEG 326
              +  I  ++KVV+VD GLG+ + I  T      +V +S +A+ +V  +      ++  
Sbjct: 461 APAISAIVPEAKVVKVDPGLGVYVKIGDT--KKMGFVHVSRLADGKVENIAPDHGPFRVD 518

Query: 327 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV-------IAVDSFG 379
           S    R++G+  L+ L     +    E       DV  G VVKGK+         VD  G
Sbjct: 519 SVHEARVVGYSALDDLYLLSYERKVIEQPFLRLEDVTVGAVVKGKIEKLLIGPTGVD--G 576

Query: 380 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 437
            IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  ++++I +T KK+L+ 
Sbjct: 577 LIVALADGITGLVPSMHFADAALQFPEKKFREGMAITARILSVNLQNRQIRLTLKKSLLN 636

Query: 438 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 497
           S+ AI   Y +      + G I  I+ HG  V+FY  V+GF P SE+      +PS  + 
Sbjct: 637 SESAIWKDYEDIVPGAQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAFIKDPSQHFR 696

Query: 498 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVV 552
            GQVV    +S  P+  ++ +S    P+  +E      + ++ G LV+G V   + + ++
Sbjct: 697 QGQVVNVHALSVDPSLGKLAVS-CKDPSTFTESYKKAFEKIQPGMLVTGTVFEKSADDLL 755

Query: 553 VYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAK 608
           + +   G     +   H+ D  + + ++ + S I+ G + + LLVLD + +  L+  SA+
Sbjct: 756 LKLDEFGLV-ARLDLAHVVDGSYPKQSSTL-SKIRVGQKLNDLLVLDIQRARRLIKVSAR 813

Query: 609 YSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 666
            SL  +++Q  LP+    +   + V G+V NI   G FV FLG +TG  P+    +   +
Sbjct: 814 ASLKKASKQGSLPAKFEDVQEGTEVTGFVRNITADGLFVEFLGGITGLVPKRLLAEESAS 873

Query: 667 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
                    Q V + +  V+++  R  LS+  S  +S 
Sbjct: 874 KPDYGMVKSQIVTATVHSVDADFRRFILSMNPSELTSA 911



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 153/362 (42%), Gaps = 34/362 (9%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSC 61
            W G +  + +  L + L   +RG  R  DA D + L  ++E +        F +G  +  
Sbjct: 1055 WLGFINNIADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKH--------FPIGSALKV 1106

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 121
             V  +D +K         L L        LS   +  GMV+   V  + +   I+     
Sbjct: 1107 HVTAVDTEKGR-------LDLAAKQRSDKLSFSDITVGMVVPGRVTKVTEKQVIMQLS-D 1158

Query: 122  SFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTVSKCVT-- 174
            S  G +   +L+++      P +     +L+  V  +D+  K + LS  P  V       
Sbjct: 1159 SIVGAVNLIDLSDDYS-KADPTVYNKNEVLRACVVGVDKANKKISLSLRPSKVLSSSLSV 1217

Query: 175  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
            +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L +++    WK+ + 
Sbjct: 1218 QDPEITSMKQLKVNDVVRGFVKRVADSGLFVALGHDVTAYVRVSDLSDSY-LKEWKDSFQ 1276

Query: 235  QHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLG 290
              + +  RI  VDP    + +TL    L  + +AP +   +KVG I    KV +V+    
Sbjct: 1277 VDQLIKGRITLVDPEQGRLQMTLKESALDPNYKAPVTINDLKVGQIV-TGKVRKVEEFGA 1335

Query: 291  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
             ++   S  +S   +   S++A++ V   +  Y+EG  V+ +I+     +G  +  LKAS
Sbjct: 1336 FIVVDRSANISGLCHR--SEMADKRVENAKALYEEGDVVKAKIIKIDRDQGKISFSLKAS 1393

Query: 351  AF 352
             F
Sbjct: 1394 HF 1395


>gi|54607128|ref|NP_035183.2| protein RRP5 homolog [Mus musculus]
 gi|224493305|sp|Q6NS46.2|RRP5_MOUSE RecName: Full=Protein RRP5 homolog; AltName: Full=Apoptosis-linked
            gene 4 protein; AltName: Full=Programmed cell death
            protein 11
          Length = 1862

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 391/1405 (27%), Positives = 655/1405 (46%), Gaps = 164/1405 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 84   MRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLLRLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  LD    E GK+ + LS+    + K LS + ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FL      E     N G   K G  L  VV  +     VV LS +   
Sbjct: 202  YLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSLSVEHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+       
Sbjct: 262  VSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE-----PK 316

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
                Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D   V   
Sbjct: 317  KMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  ++ LA  
Sbjct: 377  FKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++  +  P
Sbjct: 434  SLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+  G E+  RVL    ++K++ +T KKTLV SKL++++ Y  A   L THG I +++
Sbjct: 494  EKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 522
             +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ LSF ++
Sbjct: 554  DYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLL 613

Query: 523  KPTRVSEDDL---------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
              +R  +  +         V++G LV   V   T   + V ++    +   +PT HL+DH
Sbjct: 614  SDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPTPHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
              +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I P  ++
Sbjct: 673  AANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V+    R
Sbjct: 733  IGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQR 792

Query: 692  ITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVIEGK 747
            + LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G V++  
Sbjct: 793  MLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMVLDAV 852

Query: 748  VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V +SL  
Sbjct: 853  VHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEVHVSLHQ 912

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  H + ++
Sbjct: 913  DLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETGHLVAFS 954

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS----------ETET 915
             +S  N T  F  ++   GQ V  T+       T   L+L ++  +          ++ET
Sbjct: 955  LISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTRMPVQRDSET 1012

Query: 916  SSSK--------------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 955
               K                    ++KK+ S  +G  V   I  +K   + +    GF G
Sbjct: 1013 VDDKGEEKEEEEEEEEKEEENLTVKSKKRHSLAIGDKVTGTIKAVKATHVVVTLADGFVG 1072

Query: 956  RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSI 1006
             IH + + DD   V  +  +  K G+ VTAR+I     K++K  P     F   + ELS+
Sbjct: 1073 CIHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSV 1131

Query: 1007 KPSMLTVS----EIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFI 1059
            +PS L  S       S+   E+      GQ VT +   Y V  +W  + I   ++ ++ +
Sbjct: 1132 RPSELKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDIRGRIPL 1191

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISNDN 1118
            L ++     L+   ++F +G+A+   V+  +  +  L L ++ P++              
Sbjct: 1192 LLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR-------------- 1237

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
                + EG++  GR+ K++    GL V       G+V    L +         Y E    
Sbjct: 1238 ----LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SYSEA--- 1281

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
            PL  +   + V+C +L  +  V     + LSLRSS     + N       ++ P   +  
Sbjct: 1282 PLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP--EINS 1328

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-----FPIGK 1293
            IED+    +++GYVK V      I L   +      S++S+     PEKE      P GK
Sbjct: 1329 IEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNGCLPEGK 1386

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDS 1318
            LV  +VL V P+   +E++L  SD+
Sbjct: 1387 LVTAKVLRVNPMKNLIELSLLPSDT 1411



 Score =  280 bits (715), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 138/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)

Query: 1516 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1574
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1573 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1632

Query: 1575 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1634
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1633 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1690

Query: 1635 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1693
            +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +
Sbjct: 1691 IYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1750

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753
            H+  I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1751 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1810

Query: 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1811 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1855



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
             +   T+  S I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 523  KTLV-TSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 581  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611


>gi|345792763|ref|XP_535003.3| PREDICTED: protein RRP5 homolog [Canis lupus familiaris]
          Length = 1870

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 391/1401 (27%), Positives = 649/1401 (46%), Gaps = 168/1401 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EV+E +LVI LP GL+G  +A +  D   +  NE  A E+ L     L  +F
Sbjct: 81   MRILGCVKEVHELELVISLPNGLQGFVQATEICDAYTEQLNEQVAQEEPLKDLVCLSELF 140

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  +     E GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 141  SPGMLVRCVVSSVGIT--ESGKKSVKLSLNPKNVNEVLSAEALKPGMLLTGTVSSLEDHG 198

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +     VV LS  P  
Sbjct: 199  YLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKGNGGVVGLSIGPSE 258

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+F+G VD  HL      T 
Sbjct: 259  VSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLTFFSGLVDFMHLDPKKAGTY 318

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVV 283
            + N     + V A +L V P +RAV L+L P  L       R    H+  G + D   V 
Sbjct: 319  FSN-----QAVRACVLCVHPRTRAVRLSLRPIFLQPGRSLTRLSCQHL--GAVLDDVPVQ 371

Query: 284  RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 343
                  G    +    +   AY  +S +++ +     + YK G+  + RI+ +  ++ + 
Sbjct: 372  SFFSKAGATFRLKDGAL---AYARLSHLSDSKNIFNAEAYKPGNIHKCRIIDYSQMDEMV 428

Query: 344  TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 403
               L+ S  E   F + D+KPG +VKG V+ ++ +G +V+    ++ L P  H+++  I 
Sbjct: 429  LLSLRPSIIESQYFRYHDIKPGALVKGTVLTIEPYGMLVKVGEQIRGLIPPMHLADILIK 488

Query: 404  KPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 461
             P KK+ +G E+  RVL    ++K++ +T KKTL++SKL  ++ YA+A   L THG+I +
Sbjct: 489  NPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGLQTHGFILR 548

Query: 462  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
            ++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF 
Sbjct: 549  VKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVVVLNCEPSKERMLLSFK 608

Query: 522  M--KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
            +   P +        +   + +G LV   V   T + + V V+        +PT HL+DH
Sbjct: 609  LLGDPKKEHTGHSQKKRRAISVGQLVDVKVLEKTKDGLEVSVLPHNIP-AFLPTPHLSDH 667

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + + IHP  ++
Sbjct: 668  VANGPLLYHWLQAGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFAEIHPGMLL 727

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 728  IGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQR 787

Query: 692  ITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGK 747
            + LSL+ S C   D +          LEE+  +     +  S L + +     G V++ +
Sbjct: 788  MLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMVLDLE 847

Query: 748  VHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLSL 804
            V E  + G VV F E   V G +   + +  AG  VE G   +  IL+V   +  V +SL
Sbjct: 848  VQEVLEDGSVV-FSE-GPVSGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKLEVHVSL 905

Query: 805  KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIG 864
                +        NR+ +K K+  E       HQ   AIV+ ++E++ V SL E  H   
Sbjct: 906  CHDLV--------NRKPKKLKKGSE-------HQ---AIVQHLEESFAVASLVETGHLAA 947

Query: 865  YASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKR--- 920
            ++  S  N T +F  ++   GQ V  T+       T    LL ++  +   T    R   
Sbjct: 948  FSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGMTG--FLLAVEGPAAKRTVRQTRKDS 1005

Query: 921  ----------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
                            A KK +  +G +V   +  IKP  + +    G  G IH + + D
Sbjct: 1006 ETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILD 1065

Query: 965  DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML- 1011
            D   V  +  +  K+G+TVTAR+I      DMK   FL            ELS++PS L 
Sbjct: 1066 D-VPVGTSPTAKLKVGRTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSELE 1121

Query: 1012 -----TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAY 1064
                  ++   S  L +      GQ +  ++  Y V  +W  + I+  ++ ++ +L ++ 
Sbjct: 1122 KDGCTALNTHSSSHLEKIKQYQAGQTLICFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSL 1181

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
                L+   ++F IG+A+   V+  +  K  L L L             I    ++    
Sbjct: 1182 SFKVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE---- 1224

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            +G++  GR+ K+ +   GL V           F ++  + V      Y E    PL  + 
Sbjct: 1225 KGEVAMGRVVKV-TPKEGLTVSFP--------FGKIGKVSVFHVSDSYSE---TPLEDFV 1272

Query: 1185 EGQFVKCKVLEISRTVRGTFHV-ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
              + V+C VL        T HV  LSLRS     S TN    S   D     +  I+D+ 
Sbjct: 1273 PQKIVRCYVLS------ATGHVLTLSLRS-----SRTNPETKSKITDP---EINSIQDIQ 1318

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAG 1297
               +++GYVK+V   G    L   +   V   ++S     SP K+       P GKL+  
Sbjct: 1319 EGQLLRGYVKSVQPHGVLFGLGPSVVGLVQYPHVSQ---YSPSKKTLYNRYLPEGKLLTA 1375

Query: 1298 RVLSVEPLSKRVEVTLKTSDS 1318
            +VLS++     VE++   +D+
Sbjct: 1376 KVLSLKCQKNLVELSFLPNDT 1396



 Score =  289 bits (739), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/327 (44%), Positives = 221/327 (67%), Gaps = 5/327 (1%)

Query: 1475 EVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1533
            +V LD   P +   G S +    ++ +   +K ++  +  EK++ E+E+   EE L++  
Sbjct: 1539 DVGLDSLTPALPPRGESSDSEEDNKPQQSTQKKSKKERMLEKQKAEKELSRIEEALMDPG 1598

Query: 1534 -APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1592
              P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN
Sbjct: 1599 RQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLN 1658

Query: 1593 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1652
            +WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +M
Sbjct: 1659 VWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYNKSEKFQEAGELYNRM 1716

Query: 1653 IKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1711
            +K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ G A
Sbjct: 1717 LKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDA 1776

Query: 1712 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771
            +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+
Sbjct: 1777 ERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKR 1836

Query: 1772 YLEYEKSVGEEERIEYVKQKAMEYVES 1798
            YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1837 YLDYEKQHGTEKDVQAVKAKALEYVEA 1863



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 151/333 (45%), Gaps = 53/333 (15%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGG-RISKI 1136
            +AV   VL ++   + +RL LRP   Q G S     ++  + Q   H G ++    +   
Sbjct: 322  QAVRACVLCVHPRTRAVRLSLRPIFLQPGRS-----LTRLSCQ---HLGAVLDDVPVQSF 373

Query: 1137 LSGVGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
             S  G    ++ G   Y R+ H ++ KNI  ++               Y  G   KC+++
Sbjct: 374  FSKAGATFRLKDGALAYARLSHLSDSKNIFNAE--------------AYKPGNIHKCRII 419

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
            + S+       V LSLR S+              +++      +  D+ P  +V+G V  
Sbjct: 420  DYSQMDE---MVLLSLRPSI--------------IES---QYFRYHDIKPGALVKGTVLT 459

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            +   G  + +  ++   +   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK
Sbjct: 460  IEPYGMLVKVGEQIRGLIPPMHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK 519

Query: 1315 TS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
             +  +S+  +   I   ++   G    G I RV+ YG  +   N ++ GL    ELS ++
Sbjct: 520  KTLIESKLPA---ITCYADAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSAEY 575

Query: 1373 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            V + E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 576  VPDPERVFYTGQVVKVVVLNCEPSKERMLLSFK 608



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 33/245 (13%)

Query: 871  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 930
            +   K P K+F  GQ++ ATV+  P SS A   L L+                    + G
Sbjct: 1183 FKVLKHPDKKFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEKG 1226

Query: 931  SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
             +    + ++ P E L + F  G  G++ +  V+D  S   E    +F   + V   +++
Sbjct: 1227 EVAMGRVVKVTPKEGLTVSFPFGKIGKVSVFHVSDSYS---ETPLEDFVPQKIVRCYVLS 1283

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1045
             +         +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V     
Sbjct: 1284 ATG-------HVLTLSLRSSR-TNPETKSKITDPEINSIQDIQEGQLLRGYVKSVQPHGV 1335

Query: 1046 LLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1104
            L  +   +   + +   S Y PS+   + R    GK +T  VLS+  +K L+ L   P  
Sbjct: 1336 LFGLGPSVVGLVQYPHVSQYSPSKKTLYNRYLPEGKLLTAKVLSLKCQKNLVELSFLPND 1395

Query: 1105 DGISD 1109
             G  D
Sbjct: 1396 TGKPD 1400



 Score = 45.4 bits (106), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             N + +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 716  KNFAEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 774

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 775  VAKVTNVDEEKQRMLLSLRLS 795


>gi|449505853|ref|XP_002193665.2| PREDICTED: protein RRP5 homolog [Taeniopygia guttata]
          Length = 1834

 Score =  409 bits (1050), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 373/1394 (26%), Positives = 653/1394 (46%), Gaps = 152/1394 (10%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANED----NLLPTIF 53
            M L G + EV++ +L I LP GL G   + + +DA   +L  ++   E     N LP IF
Sbjct: 86   MLLLGCIKEVSDYELAISLPNGLSGFVPVTQISDAYSKLLTKQVAQGEVPEELNSLPDIF 145

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV CIV  ++  K + G+R + LS+    + KGL+   +  GMVL+  V S+EDHG
Sbjct: 146  SPGTLVRCIVTSVE--KSDDGRRSVKLSIDPEKVNKGLNSAALTAGMVLSGSVLSVEDHG 203

Query: 114  YILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP         A   G D+K G  L  ++  +    +VV LS D   
Sbjct: 204  YLIDIGIAGTHAFLPHQKAKNYIKAVKKGPDLKIGQNLNCLIVEVKNEGRVVSLSIDRSE 263

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            V+  +  + +  ++  L+PG++V  RVQ +   G+ ++FL+YFTG VD  H   T P  +
Sbjct: 264  VAASIATERQNWTLSNLLPGLVVKARVQKVFPLGMKVTFLSYFTGIVDFMH---TDPEKS 320

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
                Y+  + V A +L V PTSRAV LTL P  LH    P  +   ++G + +++ V   
Sbjct: 321  M--SYSPDQVVKACVLSVHPTSRAVRLTLRPPFLHAGGAPRQLPAQRMGAVVEEATVKAF 378

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G + ++      T A+  +  +++         ++EG   + RI+ +  ++ +   
Sbjct: 379  YKQFGAIFELDD---GTLAFARLKHLSKTRKSFKPGAFQEGCKHKCRIIAYSLMDEMCIV 435

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             LK    E     + D+  G VV+GKV+++   G  V+   G++ L P  H+S+  + +P
Sbjct: 436  SLKHQIIEARFLQYQDIHTGDVVQGKVLSLKPIGMQVKVADGIRGLVPSLHLSDVILKQP 495

Query: 406  GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    + K++ +T KK+LV+SKL +LS+Y +A   LITHG++    
Sbjct: 496  EKKYNIGDEVKCRVLECNPEGKKLILTLKKSLVQSKLPVLSNYEDAKPGLITHGFVVCAR 555

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
            + GC V+FYN V+G  P++ELG +P   P  +++ GQV+K  ++   P   R+ LSF + 
Sbjct: 556  EFGCIVKFYNDVKGLVPKNELGSEPISCPDKVFYEGQVLKVMVLKCEPQQERLLLSFRLS 615

Query: 524  PTRVSEDDL-----------VKLGSLVSGVVDVVTPNAVVVYVIA-KGYSKGTIPTEHLA 571
                 ED              ++G +V   +     N + V ++  +      IP  HL+
Sbjct: 616  SKPGPEDKWKCTPKEKQEVKYQIGEIVDVRILKKKDNGLEVSILEDEDNVVAWIPMLHLS 675

Query: 572  DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNS 629
            D ++ + ++   ++ G    ++L L  +  +L+LS K ++I++ Q+  +  + S I P  
Sbjct: 676  DFVDISKLLWHCLREGDVLPRVLYLSAKGEHLILSRKSAVISAVQEEKVVRNFSEIQPGM 735

Query: 630  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
            ++ GYV N++  G FV F   +TG AP+    D    D    + VGQ+V + ++  + E 
Sbjct: 736  LLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVMSTDEEK 795

Query: 690  GRITLSLKQSCCSSTDAS-----FMQEHFL-LEEKIAMLQSSKHNGSELKWVEGFIIGSV 743
             R+ L+LK S CSS D++      + ++F  L+E   +L+  + +  EL  V G  +  V
Sbjct: 796  QRVLLNLKVSECSSGDSASESFDLLNQYFKELKEIRDLLRRGEPSICEL--VPGKRVHLV 853

Query: 744  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            ++  V E  D   + S    + +    T + L    +  G   +  +L V      V +S
Sbjct: 854  VQD-VRE--DGSALFSGSPVTGLTVTATRYHLGDKNIAPGEKRKVLVLHVDALTSEVYVS 910

Query: 804  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 863
            L+   +          + + K+R RE S+        + +V+ + E++ + SL E     
Sbjct: 911  LREELL----------KQRPKRRLRENSQH-------SVVVQHITEHFAIASLLETGQLA 953

Query: 864  GYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLL---------LLLKAISET 913
                   +N T +F  ++   GQ + AT+ A+   +  G LL         + ++  +E+
Sbjct: 954  AVPIACHFNDTFRFDSEKLRVGQKISATLKAV-KENNHGVLLAVQGPAKKNVFVRVRNES 1012

Query: 914  ETSSSKRAKK-KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 972
            ET+  +     K S   G +V   +  +KP  + +       G IH + + D+   +   
Sbjct: 1013 ETALEEVLPAVKHSLSPGDVVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDE-VPIGSF 1071

Query: 973  LFSNFKIGQTVTARIIAKSN----------KPDMKKSFLWELSIKPS--------MLTVS 1014
              S  + GQ VTAR+I   +           P   +S + ELSI+PS        ML + 
Sbjct: 1072 PTSTLQAGQKVTARVIGGRDVNTHRCLPITHPHFTQS-IPELSIRPSEQEGEFTAMLNLK 1130

Query: 1015 EIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1072
            E  S  L +    ++GQ VT +V  Y +   W  + ++  ++ ++  L  +     L+  
Sbjct: 1131 EESS--LKQLGLYNVGQTVTCFVKKYNMLKNWLEVEVAPDIRGRVPHLLLSLSTKVLKHP 1188

Query: 1073 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1132
            ++ F  G+A++  V   +  ++ L L L   Q                  + +  I  G 
Sbjct: 1189 EKSFKNGQAISATVTGTDATERNLCLSLTGIQS-----------------LEQDTISVGM 1231

Query: 1133 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1192
            ++K+   V GL + +     G+V    L N   +D          +PL  +  G+ V+C 
Sbjct: 1232 VTKVTPHV-GLTIALPGGKTGKVSIFHL-NDTYTD----------NPLGNFKVGKIVRCY 1279

Query: 1193 VLEISRTVRGTFHVELSLRSS-LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1251
            +L I         ++LSLR S L+   ++   D+          +  I+D+    +V+GY
Sbjct: 1280 ILSIENG-----KIQLSLRQSRLNPKINSKVEDI---------EITSIKDVKKGQLVRGY 1325

Query: 1252 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKR 1308
            VK++T  G F  LS  L  ++L  N+S  +V+     +K  P GKL+  +VL V    K 
Sbjct: 1326 VKSITPSGVFFGLSTSLLGRILFQNVSPYFVQKHSLYKKYLPEGKLLTAKVLGVNRKEKH 1385

Query: 1309 VEVTLKTSDSRTAS 1322
            +E++L   D+   S
Sbjct: 1386 IELSLLPEDTGMPS 1399



 Score =  278 bits (712), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 186/265 (70%), Gaps = 3/265 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P++ D+F+RLV  SPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 1565 PQSADDFDRLVLGSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 1624

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            VA  NLEN YG   EE ++KVF+RA+QY +P KV   L  +Y  +E+ K A+EL + M+K
Sbjct: 1625 VALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLK 1682

Query: 1655 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            +F+    VWL+    LLKQ Q E    +++RAL +LP  +H+  IS+ A LEF +G  + 
Sbjct: 1683 RFRQEKSVWLKYASFLLKQGQAEATHRLLERALKALPTKEHVDVISRFAQLEFHSGDTEH 1742

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
             +++FE  LS YPKRTD+WSIY+D  I+ G    +R +FER I LSL PKKMKF FK+YL
Sbjct: 1743 AKALFESTLSSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFKRYL 1802

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVES 1798
            +YEK  G  E +  VK+ A+EYVE+
Sbjct: 1803 DYEKKFGTAESVLAVKRAALEYVET 1827



 Score = 40.4 bits (93), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 1320 TASQSE--INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
            +A Q E  + N S +  G ++ G ++ V  +G+F+      + GL     +S+  V + +
Sbjct: 717  SAVQEEKVVRNFSEIQPGMLLTGYVRNVMPFGVFVEFP-FGVTGLAPKVSMSDKFVTDTK 775

Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              +  G+ V  K++  D+EK+R+ L +K S
Sbjct: 776  DHFVVGQTVIAKVMSTDEEKQRVLLNLKVS 805


>gi|302667984|ref|XP_003025570.1| hypothetical protein TRV_00210 [Trichophyton verrucosum HKI 0517]
 gi|291189685|gb|EFE44959.1| hypothetical protein TRV_00210 [Trichophyton verrucosum HKI 0517]
          Length = 1799

 Score =  409 bits (1050), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 393/1412 (27%), Positives = 663/1412 (46%), Gaps = 187/1412 (13%)

Query: 476  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 532
            QGF   S L    +D        Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 481  QGFVHLSRLADGRVDSISSIEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 537

Query: 533  VKL-----GSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSV 583
             +L     GS+V G ++  ++ P  +   +++   S  G +P  H+AD  L+H    +  
Sbjct: 538  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMADTKLQHP---EKK 594

Query: 584  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 595  FREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 654

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 655  AIVQFYGSVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLVVSCKDPSTV 714

Query: 703  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 762
            + D    Q  F                      E    G V+ G V E +   +++  ++
Sbjct: 715  TAD---YQSAF----------------------ENVHPGLVVSGTVFEKSSDDLLIKLQD 749

Query: 763  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 812
               +    ++H   G+  +  S +             +  V K+ RL++++ K       
Sbjct: 750  SGLIARLTSNHISDGSATKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATL---- 805

Query: 813  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 871
                  ++A  + R     +D+     V  IV+ I+ E   V  L      I    V D 
Sbjct: 806  ------KEAAAEGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDD 859

Query: 872  NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS------ETETSSSKRA---- 921
            +T + P   +   Q + ATV A+   S   R LL LK +S      ++ ++S K+A    
Sbjct: 860  HTSR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVSKPKQQSDSSSASEKKAPAVV 916

Query: 922  ---------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 972
                     K      VG + +A+IT +K  +L +       GRI I+E+ D   ++ + 
Sbjct: 917  LNNPIDEELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDR 976

Query: 973  L--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1021
                 +F   + +  R++   +  + K         K  ++ELS K S L  SE    L 
Sbjct: 977  KRPLKSFHSKEILPVRVLGIHDARNHKFLPISHRAGKVSVYELSTKRSCLQASEF-KPLH 1035

Query: 1022 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1081
             E+  + +G+R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A
Sbjct: 1036 LEQ--LKVGERYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSA 1093

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
            +   V  I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI     
Sbjct: 1094 LQVAVTGIDAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR-- 1142

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
             ++VQI  ++ G V   ++ +          D  + +P +      F K + L +     
Sbjct: 1143 QVLVQINDNVVGAVSLIDMAD----------DYTKVNPTN------FHKNEALRVCV--- 1183

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
                V++ + +     S   S  LS+ +      +  I++L    IV+G+V+ V + G F
Sbjct: 1184 ----VDVDIPNKKICFSVRPSKVLSSSLPVVDPEITSIDNLKVGQIVRGFVRRVDNIGVF 1239

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            + L   + A + +S+LSD +++  + EF + +LV GR+  V+  + +V++TLK S +   
Sbjct: 1240 VTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKVQMTLKKS-ALDP 1298

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1380
            +      L +L VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y
Sbjct: 1299 NYKPPFTLKDLKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLY 1358

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD--EAIEEVGSYNRSS 1438
               + VK K+LKVD EK +I+LG+K+SYF++      +  EEESD   + +E G      
Sbjct: 1359 EKDDIVKAKVLKVDLEKGQIALGLKASYFRD------LPEEEESDANSSDDEAGGIK--- 1409

Query: 1439 LLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD-------MDNGIS- 1490
             L+  S +  D+ M    GG  +  + +        E    +  PD       + +G   
Sbjct: 1410 -LDVGSDSDDDVSM----GGVDLEGEDDEEEEEDSDEDIEMENAPDSTKKSGLVTSGFDW 1464

Query: 1491 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1550
               G  D  +  DE        K K+ R+ EI+      L+ + P+T  ++ERL+   P+
Sbjct: 1465 TGDGDKDMNEAADESTEDDGATKRKKRRKAEIQVDRTGDLDANGPQTVADYERLLLGEPD 1524

Query: 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610
            SS +W+KYMAF L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++
Sbjct: 1525 SSLLWLKYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DD 1582

Query: 1611 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1670
             + +VF+ A +Y D  +++  +  ++ ++ + + ADEL    +KK   S   +       
Sbjct: 1583 TLDEVFKSACEYNDAHEIYDRMTSIFIQSGKAEKADELFQTALKKKVSSTPDFFLNYANF 1642

Query: 1671 LKQQQEGVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEY 1725
            L    E  Q    ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +
Sbjct: 1643 LFDTMEAPQRGRDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGGIERGRTVFEGLLSSF 1702

Query: 1726 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLF 1769
            PKR DLW++ LD EI++GD + +R LFER + +                 L  K+ KFLF
Sbjct: 1703 PKRIDLWNVLLDLEIKVGDEEQVRRLFERVLGIGHGVVAADGTKGGPKKKLKEKQAKFLF 1762

Query: 1770 KKYLEYEKSV---GEEERIEYVKQKAMEYVES 1798
            KK+L +E+ +   G+ + ++ VK +A +YV S
Sbjct: 1763 KKWLAFEEKIAPEGDTKMVDEVKARAADYVRS 1794



 Score =  200 bits (509), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 282/1203 (23%), Positives = 508/1203 (42%), Gaps = 109/1203 (9%)

Query: 55   VGQLVSCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 111
            VGQ +   V   ++ +DD+K   K+ I LS+       GL+   +     + A V S+ED
Sbjct: 217  VGQYLRAAVTATIRNEDDRKVKNKKHIELSIEPHAANSGLTKADMVVNATVQASVVSVED 276

Query: 112  HGYILHFGLP--SFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDP 166
            HG ++  GL      GF+    L   +G+D   VK G +   +V   + +  V+ LS+D 
Sbjct: 277  HGLVMDLGLEENEAKGFISSRELP--AGVDISTVKEGSVFLCIVTGQNASGTVIKLSADL 334

Query: 167  DTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
             +              +I+  +PG      +  +   G++   +      VD+ H   + 
Sbjct: 335  ASAGSVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVIHSGASD 394

Query: 225  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN----------PYLLHNRAPPSHVKVG 274
               +    Y+   K+  R++   P+S  + L  +             L N A      + 
Sbjct: 395  GKKDLTTKYHAGAKIKGRLITTYPSSDPIKLGFSILDSVLKFSPTATLVNGADDDLPSIS 454

Query: 275  DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSCVRV 331
            DI  + KV  VD  LGL + + ST      +V +S +A+   + +  +E  YK GS    
Sbjct: 455  DIIPEVKVTYVDSSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSIEGPYKVGSTHEG 512

Query: 332  RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPG 386
            RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I  +   G IV    
Sbjct: 513  RIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTD 572

Query: 387  GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILS 444
             +  L P  HM++ ++  P KKF+ G ++  RVL V  + +++ +T KK+L+ S  A   
Sbjct: 573  SISGLVPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWK 632

Query: 445  SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 504
             Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQVV  
Sbjct: 633  DYESISAGSRSPGTLIKIQNNGAIVQFYGSVKGFLPVSEMSEAYIKDPSQHFTVGQVVNV 692

Query: 505  RIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKG 559
              ++    + R+ +S    P+ V+ D     + V  G +VSG V   + + +++ +   G
Sbjct: 693  HALTVDAENERLVVS-CKDPSTVTADYQSAFENVHPGLVVSGTVFEKSSDDLLIKLQDSG 751

Query: 560  YSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ 616
                 + + H++D      T   + I+ G + D LLV   + S+ L+  + K +L  +A 
Sbjct: 752  LI-ARLTSNHISDGSATKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATLKEAAA 810

Query: 617  Q--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 674
            +  LP+    I     V G V NII  G FV FL  LTG  P+    D   +     Y  
Sbjct: 811  EGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHTSRPDFGYSR 870

Query: 675  GQSVRSNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 729
             Q + + +  V  ++ R  LSLK     +    S+ AS        E+K   +  +    
Sbjct: 871  FQVISATVCAVQEDSDRFLLSLKPVSKPKQQSDSSSAS--------EKKAPAVVLNNPID 922

Query: 730  SELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHHQLAGAT 779
             ELK +E  ++G + + K+    D    VV        +   E  D +  I   +    +
Sbjct: 923  EELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLKS 982

Query: 780  VESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
              S  ++   +L +  A+  + + +S +   +  +  +      Q  + K    + L V 
Sbjct: 983  FHSKEILPVRVLGIHDARNHKFLPISHRAGKVSVYELSTKRSCLQASEFKPLHLEQLKVG 1042

Query: 838  QTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALP 895
            +     V  + E+ L L++ P     +    +S D + +   QK F  G ++   V  + 
Sbjct: 1043 ERYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVTGID 1102

Query: 896  SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 955
            +     RL L  +  S  +T +     K      G ++   +T+I   ++ ++      G
Sbjct: 1103 AEKN--RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLVQINDNVVG 1154

Query: 956  RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE 1015
             + + ++ DD + V     +NF   + +   ++   + P+ K  F    S++PS +  S 
Sbjct: 1155 AVSLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKICF----SVRPSKVLSSS 1206

Query: 1016 IG--SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1073
            +      +    ++ +GQ V G+V +VDN    +T+   + A  +I  S    S L+E++
Sbjct: 1207 LPVVDPEITSIDNLKVGQIVRGFVRRVDNIGVFVTLGHDVTA--YIRVSDLSDSFLKEWK 1264

Query: 1074 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1133
              F + + V G +  ++K+   +++ L+      + K      D     +  G IV G++
Sbjct: 1265 DEFQVDQLVQGRLTVVDKDNNKVQMTLKKSALDPNYKPPFTLKD-----LKVGQIVTGKV 1319

Query: 1134 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
             K+      + +    +L G  H +E+    V D        Q      Y++   VK KV
Sbjct: 1320 RKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT------QL-----YEKDDIVKAKV 1368

Query: 1194 LEI 1196
            L++
Sbjct: 1369 LKV 1371


>gi|281352084|gb|EFB27668.1| hypothetical protein PANDA_001797 [Ailuropoda melanoleuca]
          Length = 1874

 Score =  408 bits (1049), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 392/1403 (27%), Positives = 643/1403 (45%), Gaps = 172/1403 (12%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GLRG  +  +  D      NE  A E+ L     LP +F
Sbjct: 83   MRILGCVKEVNEIELVISLPNGLRGFVQVTEICDAYTKKLNEQVAQEEPLKDLVSLPELF 142

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  +   ++  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 143  SPGMLVRCVVSSVGITER--GKKSVKLSLNPKNVNEVLSAEALKPGMLLTGTVSSLEDHG 200

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +     VV LS     
Sbjct: 201  YLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKGNGGVVGLSVVHSE 260

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL++FTG VD  HL      T 
Sbjct: 261  VSTAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLSFFTGLVDFMHLDPKKAGTY 320

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVV 283
            + N     + V A +L V P +RAV L+L P  L       R    H+  G + D+  V 
Sbjct: 321  FSN-----QAVRACVLCVHPRTRAVRLSLRPVFLQPGRSLTRLSCQHL--GAVLDEVPVQ 373

Query: 284  RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 343
                  G    +    +   AY  ++ +A+ +     + +K G+  + R++ +  ++ LA
Sbjct: 374  NFFSKAGATFRLKDGAL---AYARLTHLADSKNVFNAEAFKPGNTHKCRVIDYSQMDELA 430

Query: 344  TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 403
               L+ S  E     + D+KPG +V+G V+ + S+G +V+    ++ L P  H+++  + 
Sbjct: 431  LLSLRTSVIEAQYLKYHDIKPGALVEGTVLTIKSYGMLVKVGEQIRGLIPPMHLADILMK 490

Query: 404  KPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 461
             P KK+++G E+  RVL    ++K++ +T KKTL++SKL  ++ YA+A   L THG+I +
Sbjct: 491  NPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAVTCYADAKPGLQTHGFILR 550

Query: 462  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
            ++  GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF 
Sbjct: 551  VKDCGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSKERMLLSFR 610

Query: 522  M--KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
            +   P +        E   V LG LV   V   T + + V V+        +PT HL+DH
Sbjct: 611  LLGDPKKEHPGKSQKERRTVSLGQLVDVKVLEKTKDGLEVAVLPHNIP-AFLPTPHLSDH 669

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   + IHP  ++
Sbjct: 670  VANGPLLYHWLRAGDTLHKVLCLSQSERHVLLCRKPALVSTVEGGQDPKSFAEIHPGMLL 729

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 730  IGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQR 789

Query: 692  ITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGK 747
            + LSL+ S C   D +          LEE+  +     +  S L + +     G V++ +
Sbjct: 790  MLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMVLDLE 849

Query: 748  VHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLSL 804
            V E  + G  V+F E   V G +   + +  AG  VE G   +  IL+V   +  V +SL
Sbjct: 850  VQEVLEDG-SVAFSE-GPVPGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKLEVHVSL 907

Query: 805  KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIG 864
                +        NR+A+K ++  E            AIV+ ++E++ V SL E  H   
Sbjct: 908  CHDLV--------NRKAKKLRKGSE----------YQAIVQHLEESFAVASLVESGHLAA 949

Query: 865  YASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKR--- 920
            ++  S  N T +F  ++   GQ V  T+       T    LL ++  +   T    R   
Sbjct: 950  FSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--FLLAVEGPAAKRTVRQTRKDS 1007

Query: 921  ----------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
                            A KK +  +G +V   +  IKP  + +    G  G IH + + D
Sbjct: 1008 ETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILD 1067

Query: 965  DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSMLT 1012
            D   V  +  +  K+G+TVTAR+I      DMK   FL            ELSI+PS L 
Sbjct: 1068 D-VPVGTSPTAKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSIRPSEL- 1122

Query: 1013 VSEIGSKLLFEECDVSIGQRVTGYV-----------YKVDNEWALLTISRHLKAQLFILD 1061
              E   +       VS  +++  Y            Y V  +W  + I+  ++ ++ +L 
Sbjct: 1123 --EKDGRTALNTHSVSPLEKIKQYQAGQTLICFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1180

Query: 1062 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1121
             +     L+   ++F IG+A+   V+  +  K  L L L             I    ++ 
Sbjct: 1181 MSLSFKVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE- 1226

Query: 1122 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
               +G++  GR+ K+ +   GL V       GRV         VSD    Y E    PL 
Sbjct: 1227 ---KGEVAMGRVMKV-TPKEGLTVSFPFGKIGRVSI-----FHVSD---SYSE---TPLE 1271

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
             +   + V+C VL ++  V     + LSLRS     S TN    S   D     +  I+D
Sbjct: 1272 DFVPQKVVRCYVLSVTGHV-----LTLSLRS-----SRTNPETKSKITDP---EINSIQD 1318

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLV 1295
            +    +++GYVK V   G    L   +   V L+        SP K+       P GKL+
Sbjct: 1319 VQEGQLLRGYVKCVQPHGVLFGLGPSV---VGLARYPHVSQYSPSKKALYNRYLPEGKLL 1375

Query: 1296 AGRVLSVEPLSKRVEVTLKTSDS 1318
              +VL +      VE++   SD+
Sbjct: 1376 TAKVLRLNRQKNLVELSFLPSDT 1398



 Score =  285 bits (730), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/330 (44%), Positives = 220/330 (66%), Gaps = 13/330 (3%)

Query: 1475 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE----KEEREQEIRAAEERLL 1530
            +V LD   P +       +G + +++  D+       KKE    K++ E+E+   EE L+
Sbjct: 1545 DVGLDSLTPALPP-----RGESSDSEDDDKPQQSTVSKKERMLEKQKAEKELSRIEEALM 1599

Query: 1531 EKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            +    P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE E
Sbjct: 1600 DPGRQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQE 1659

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL 
Sbjct: 1660 KLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELY 1717

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
             +M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ 
Sbjct: 1718 NRMLKRFRQEKAVWIKYGAFLLRRAQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQL 1777

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1768
            G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF 
Sbjct: 1778 GDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFF 1837

Query: 1769 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1838 FKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1867



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 150/332 (45%), Gaps = 51/332 (15%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
            +AV   VL ++   + +RL LRP   Q G S     +S  ++   + E  +         
Sbjct: 324  QAVRACVLCVHPRTRAVRLSLRPVFLQPGRS--LTRLSCQHLGAVLDEVPV-----QNFF 376

Query: 1138 SGVGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1195
            S  G    ++ G   Y R+ H  + KN+        ++   F P      G   KC+V++
Sbjct: 377  SKAGATFRLKDGALAYARLTHLADSKNV--------FNAEAFKP------GNTHKCRVID 422

Query: 1196 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1255
             S+         LSLR+S+                   ++L K  D+ P  +V+G V  +
Sbjct: 423  YSQMDELAL---LSLRTSV----------------IEAQYL-KYHDIKPGALVEGTVLTI 462

Query: 1256 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
             S G  + +  ++   +   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK 
Sbjct: 463  KSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKK 522

Query: 1316 S--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            +  +S+  +   +   ++   G    G I RV+  G  +   N ++ GL    ELS ++V
Sbjct: 523  TLIESKLPA---VTCYADAKPGLQTHGFILRVKDCGCIVKFYN-DVQGLVPKHELSAEYV 578

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             + E ++ AG+ VKV +L  +  K R+ L  +
Sbjct: 579  PDPERVFYAGQVVKVVVLNCEPSKERMLLSFR 610



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             + + +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 718  KSFAEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 776

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 777  VAKVTNVDEEKQRMLLSLRLS 797


>gi|74194348|dbj|BAE24688.1| unnamed protein product [Mus musculus]
          Length = 1438

 Score =  408 bits (1048), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 391/1405 (27%), Positives = 653/1405 (46%), Gaps = 164/1405 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 84   MRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLLRLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  LD    E GK+ + LS+    + K LS + ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FL      E     N G   K G  L  VV  +     VV LS +   
Sbjct: 202  YLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSLSVEHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+       
Sbjct: 262  VSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE-----PK 316

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
                Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D   V   
Sbjct: 317  KMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  ++ LA  
Sbjct: 377  FKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++  +  P
Sbjct: 434  SLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+  G E+  RVL    ++K++ +T KKTLV SKL++++ Y  A   L THG I +++
Sbjct: 494  EKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 522
             +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ LSF ++
Sbjct: 554  DYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLL 613

Query: 523  KPTRVSEDDL---------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
              +R  +  +         V++G LV   V   T   + V ++    +   +PT HL+DH
Sbjct: 614  SDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPTPHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
              +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I P  ++
Sbjct: 673  AANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V+    R
Sbjct: 733  IGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQR 792

Query: 692  ITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVIEGK 747
            + LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G V++  
Sbjct: 793  MLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMVLDAV 852

Query: 748  VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V +SL  
Sbjct: 853  VHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEVHVSLHQ 912

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  H + ++
Sbjct: 913  DLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETGHLVAFS 954

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS----------ETET 915
             +S  N T  F  ++   GQ V  T+       T   L+L ++  +          ++ET
Sbjct: 955  LISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTRMPVQRDSET 1012

Query: 916  SSSK--------------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 955
               K                    ++KK+ S  +G  V   I  +K   + +    GF G
Sbjct: 1013 VDDKGEEKEEEEEEEEKEEENLTVKSKKRHSLAIGDKVTGTIKAVKATHVVVTLADGFVG 1072

Query: 956  RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSI 1006
             IH + + DD   V  +  +  K G+ VTAR+I     K++K  P     F   + ELS+
Sbjct: 1073 CIHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSV 1131

Query: 1007 KPSMLTVSEIGSKLLFEECDVSI-----GQRVTGYV--YKVDNEWALLTISRHLKAQLFI 1059
            +PS L  S        E     I     GQ VT +   Y V  +W  + I   ++ ++ +
Sbjct: 1132 RPSELKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDIRGRIPL 1191

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISNDN 1118
            L ++     L+   ++F +G+A+   V+  +  +  L L ++ P++              
Sbjct: 1192 LLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR-------------- 1237

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
                + EG++  GR+ K++    GL V       G+V    L +         Y E    
Sbjct: 1238 ----LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SYSEA--- 1281

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
            PL  +   + V+C +L  +  V     + LSLRSS     + N       ++ P   +  
Sbjct: 1282 PLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP--EINS 1328

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-----FPIGK 1293
            IED+    +++GYVK V      I L   +      S++S+     PEKE      P GK
Sbjct: 1329 IEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNGCLPEGK 1386

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDS 1318
            LV  +VL V P+   +E++L  SD+
Sbjct: 1387 LVTAKVLRVNPMKNLIELSLLPSDT 1411



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
             +   T+  S I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 523  KTLV-TSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 581  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611


>gi|301756220|ref|XP_002913967.1| PREDICTED: protein RRP5 homolog [Ailuropoda melanoleuca]
          Length = 1907

 Score =  408 bits (1048), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 392/1403 (27%), Positives = 643/1403 (45%), Gaps = 172/1403 (12%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GLRG  +  +  D      NE  A E+ L     LP +F
Sbjct: 115  MRILGCVKEVNEIELVISLPNGLRGFVQVTEICDAYTKKLNEQVAQEEPLKDLVSLPELF 174

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  +   ++  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 175  SPGMLVRCVVSSVGITER--GKKSVKLSLNPKNVNEVLSAEALKPGMLLTGTVSSLEDHG 232

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +     VV LS     
Sbjct: 233  YLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKGNGGVVGLSVVHSE 292

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL++FTG VD  HL      T 
Sbjct: 293  VSTAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLSFFTGLVDFMHLDPKKAGTY 352

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVV 283
            + N     + V A +L V P +RAV L+L P  L       R    H+  G + D+  V 
Sbjct: 353  FSN-----QAVRACVLCVHPRTRAVRLSLRPVFLQPGRSLTRLSCQHL--GAVLDEVPVQ 405

Query: 284  RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 343
                  G    +    +   AY  ++ +A+ +     + +K G+  + R++ +  ++ LA
Sbjct: 406  NFFSKAGATFRLKDGAL---AYARLTHLADSKNVFNAEAFKPGNTHKCRVIDYSQMDELA 462

Query: 344  TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 403
               L+ S  E     + D+KPG +V+G V+ + S+G +V+    ++ L P  H+++  + 
Sbjct: 463  LLSLRTSVIEAQYLKYHDIKPGALVEGTVLTIKSYGMLVKVGEQIRGLIPPMHLADILMK 522

Query: 404  KPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 461
             P KK+++G E+  RVL    ++K++ +T KKTL++SKL  ++ YA+A   L THG+I +
Sbjct: 523  NPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAVTCYADAKPGLQTHGFILR 582

Query: 462  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
            ++  GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF 
Sbjct: 583  VKDCGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSKERMLLSFR 642

Query: 522  M--KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
            +   P +        E   V LG LV   V   T + + V V+        +PT HL+DH
Sbjct: 643  LLGDPKKEHPGKSQKERRTVSLGQLVDVKVLEKTKDGLEVAVLPHNIP-AFLPTPHLSDH 701

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   + IHP  ++
Sbjct: 702  VANGPLLYHWLRAGDTLHKVLCLSQSERHVLLCRKPALVSTVEGGQDPKSFAEIHPGMLL 761

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 762  IGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQR 821

Query: 692  ITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGK 747
            + LSL+ S C   D +          LEE+  +     +  S L + +     G V++ +
Sbjct: 822  MLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMVLDLE 881

Query: 748  VHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLSL 804
            V E  + G  V+F E   V G +   + +  AG  VE G   +  IL+V   +  V +SL
Sbjct: 882  VQEVLEDG-SVAFSE-GPVPGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKLEVHVSL 939

Query: 805  KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIG 864
                +        NR+A+K ++  E            AIV+ ++E++ V SL E  H   
Sbjct: 940  CHDLV--------NRKAKKLRKGSE----------YQAIVQHLEESFAVASLVESGHLAA 981

Query: 865  YASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKR--- 920
            ++  S  N T +F  ++   GQ V  T+       T    LL ++  +   T    R   
Sbjct: 982  FSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--FLLAVEGPAAKRTVRQTRKDS 1039

Query: 921  ----------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
                            A KK +  +G +V   +  IKP  + +    G  G IH + + D
Sbjct: 1040 ETVDEDEEADPALVVGAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILD 1099

Query: 965  DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSMLT 1012
            D   V  +  +  K+G+TVTAR+I      DMK   FL            ELSI+PS L 
Sbjct: 1100 D-VPVGTSPTAKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSIRPSEL- 1154

Query: 1013 VSEIGSKLLFEECDVSIGQRVTGYV-----------YKVDNEWALLTISRHLKAQLFILD 1061
              E   +       VS  +++  Y            Y V  +W  + I+  ++ ++ +L 
Sbjct: 1155 --EKDGRTALNTHSVSPLEKIKQYQAGQTLICFLKKYNVVKKWLEVEIAPDIRGRIPLLL 1212

Query: 1062 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1121
             +     L+   ++F IG+A+   V+  +  K  L L L             I    ++ 
Sbjct: 1213 MSLSFKVLKHPDKKFRIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE- 1258

Query: 1122 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
               +G++  GR+ K+ +   GL V       GRV         VSD    Y E    PL 
Sbjct: 1259 ---KGEVAMGRVMKV-TPKEGLTVSFPFGKIGRVSI-----FHVSD---SYSE---TPLE 1303

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
             +   + V+C VL ++  V     + LSLRS     S TN    S   D     +  I+D
Sbjct: 1304 DFVPQKVVRCYVLSVTGHV-----LTLSLRS-----SRTNPETKSKITDP---EINSIQD 1350

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLV 1295
            +    +++GYVK V   G    L   +   V L+        SP K+       P GKL+
Sbjct: 1351 VQEGQLLRGYVKCVQPHGVLFGLGPSV---VGLARYPHVSQYSPSKKALYNRYLPEGKLL 1407

Query: 1296 AGRVLSVEPLSKRVEVTLKTSDS 1318
              +VL +      VE++   SD+
Sbjct: 1408 TAKVLRLNRQKNLVELSFLPSDT 1430



 Score =  288 bits (738), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/326 (44%), Positives = 217/326 (66%), Gaps = 4/326 (1%)

Query: 1475 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD- 1533
            +V LD   P +      +    D+      K ++  +  EK++ E+E+   EE L++   
Sbjct: 1577 DVGLDSLTPALPPRGESSDSEDDDKPQQSTKKSKKERMLEKQKAEKELSRIEEALMDPGR 1636

Query: 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1593
             P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+
Sbjct: 1637 QPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNV 1696

Query: 1594 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1653
            WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+
Sbjct: 1697 WVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRML 1754

Query: 1654 KKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+
Sbjct: 1755 KRFRQEKAVWIKYGAFLLRRAQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDAE 1814

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
            R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+Y
Sbjct: 1815 RAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRY 1874

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVES 1798
            L+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1875 LDYEKQHGTEKDVQAVKAKALEYVEA 1900



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 150/332 (45%), Gaps = 51/332 (15%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
            +AV   VL ++   + +RL LRP   Q G S     +S  ++   + E  +         
Sbjct: 356  QAVRACVLCVHPRTRAVRLSLRPVFLQPGRS--LTRLSCQHLGAVLDEVPV-----QNFF 408

Query: 1138 SGVGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1195
            S  G    ++ G   Y R+ H  + KN+        ++   F P      G   KC+V++
Sbjct: 409  SKAGATFRLKDGALAYARLTHLADSKNV--------FNAEAFKP------GNTHKCRVID 454

Query: 1196 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1255
             S+         LSLR+S+                   ++L K  D+ P  +V+G V  +
Sbjct: 455  YSQMDELAL---LSLRTSV----------------IEAQYL-KYHDIKPGALVEGTVLTI 494

Query: 1256 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
             S G  + +  ++   +   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK 
Sbjct: 495  KSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKK 554

Query: 1316 S--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            +  +S+  +   +   ++   G    G I RV+  G  +   N ++ GL    ELS ++V
Sbjct: 555  TLIESKLPA---VTCYADAKPGLQTHGFILRVKDCGCIVKFYN-DVQGLVPKHELSAEYV 610

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             + E ++ AG+ VKV +L  +  K R+ L  +
Sbjct: 611  PDPERVFYAGQVVKVVVLNCEPSKERMLLSFR 642



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             + + +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 750  KSFAEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 808

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 809  VAKVTNVDEEKQRMLLSLRLS 829


>gi|145251307|ref|XP_001397167.1| rRNA biogenesis protein RRP5 [Aspergillus niger CBS 513.88]
 gi|134082698|emb|CAK42591.1| unnamed protein product [Aspergillus niger]
          Length = 1822

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 365/1345 (27%), Positives = 649/1345 (48%), Gaps = 164/1345 (12%)

Query: 533  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
            V LG++V G V+  ++  N V  ++  +A G + G +P+ H AD     T ++   K  +
Sbjct: 559  VTLGAVVKGKVEKLLIGANGVDGLIVALADGIT-GLVPSMHFAD-----TPLQFPEKKFH 612

Query: 589  E----FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            E      ++L ++ E   + L+ K SL+NS   +  D   I P +   G +  I   G  
Sbjct: 613  EGMTVSTRILSVNLEKRQIRLTLKKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAV 672

Query: 645  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
            V+F G + GF P S+  +    D S+ + +GQ V  + L V++   ++ +S K       
Sbjct: 673  VQFYGPIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKLAVSCKDP----- 727

Query: 705  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES----NDFGVVVSF 760
              +F + +    E I       H G         + G+V E    ++    +D+G+V   
Sbjct: 728  -ETFTEAYRKAFENI-------HPGM-------LVSGTVFEKSADDTLLKLDDYGLVARL 772

Query: 761  EEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
                   G  +      + +  G  + +  ++D+ +A RL+ ++               R
Sbjct: 773  NVEHVADGSPSKQASTLSKIRVGQKLNELMVIDIQRAHRLIKVT--------------GR 818

Query: 820  QAQKKKRKREAS----KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYN 872
            Q+ KK  K  +     +DL     V   +  +  N + +        IG      V D N
Sbjct: 819  QSLKKAAKHGSIPSEIEDLKEGADVTGFIRNITMNGVFVEF--LGGVIGLVPKRLVGDEN 876

Query: 873  TQKFPQKQFLNGQSVIATVMAL------------PSSST-AGRLLLLLKAISETETSSS- 918
              K P      GQ V ATV ++            P+ +T AG           T T  + 
Sbjct: 877  VNK-PDYGMARGQVVTATVHSVDADFQRFILSMNPAEATHAGAKKKAAAKPEPTPTDDAV 935

Query: 919  -----KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 971
                 +  K  S +  G + + +I  ++  ++ ++      GRI ++EV D   ++ +  
Sbjct: 936  ANAIDEGIKSMSDFTFGRVTKCKIVSVRATQVNVQLADNIQGRIDVSEVFDKWEDIKDRK 995

Query: 972  NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLF 1022
                 F+  Q ++ARI+   +  + K         K  ++ELS+KPS L  +   S L  
Sbjct: 996  QPLRFFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAAN-PSPLNL 1054

Query: 1023 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1082
            E+  V +G    G+V  V ++   + +S +++ +L ++D++ + S L + ++ + +G A+
Sbjct: 1055 EQ--VQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASDDLSLLADVEKHYPVGSAM 1112

Query: 1083 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1142
              HV +++ +K  L L  +   D +  + V +           G I+ GR++K+      
Sbjct: 1113 KVHVSAVDADKGRLDLSAKQRSDKLVFEDVSV-----------GMILPGRVTKVTERQ-- 1159

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
            +++Q+   + G V   ++ +          D  + +P +   + + ++  V+ I +  + 
Sbjct: 1160 VIMQLSKSIVGAVDLIDMAD----------DYTKANP-TVCQKNEVLRACVIAIDKANK- 1207

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
               + LSLR S           LS+ +    K +  I+ L  N IV+G+V+ V   G F+
Sbjct: 1208 --KISLSLRPS---------KVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVADNGLFV 1256

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
             + R + A V +S+LSD Y++  +  F + +LV GRV   +    +++++LK S      
Sbjct: 1257 TVGRDVTAYVRISDLSDSYLKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNY 1316

Query: 1323 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYR 1381
            ++ +  L +L  G +V G++++VE +G FI I+ + N+ GLCH SE++E+ V++  T+Y 
Sbjct: 1317 KAPLT-LHDLKPGQVVTGKVRKVEEFGAFIVIDGSKNISGLCHRSEMAENRVEDARTLYE 1375

Query: 1382 AGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN-RSSLL 1440
             G+ VK KILK+D+++ +IS G+K+SYF  + D      ++    +++ +G  +   S  
Sbjct: 1376 EGDAVKAKILKIDRKQEKISFGLKASYFDEEEDEDSEEDDDSEGISLDGLGGVDVEGSDD 1435

Query: 1441 ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1500
            E S V++  +D+E +       +  E     P      D          S N    DEA 
Sbjct: 1436 EESDVSMGGVDLEDDSDDESEQSDDEEMTDAPAKASRQDGGLGAGGFDWSGNNQDDDEAG 1495

Query: 1501 T-IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYM 1559
               D  +   ++ K+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W++YM
Sbjct: 1496 ARSDSDDEEDSRPKKKKNRKPEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLLWLQYM 1555

Query: 1560 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1619
            AF L + +VEKAR IAERAL+TI I ++ EKLNIWVA  NLEN YGN  ++ +  VF+RA
Sbjct: 1556 AFQLELGEVEKAREIAERALRTITIGQDAEKLNIWVAMLNLENTYGN--DDTLEDVFKRA 1613

Query: 1620 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--E 1676
             QY D ++V+   + +Y ++ +N+ AD+L    + KK   S K ++     L       E
Sbjct: 1614 CQYNDTQEVYERTISIYIQSGKNEKADDLFQTALKKKVFGSPKFFINYASFLFDTMAAPE 1673

Query: 1677 GVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSI 1734
              +A++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PK+ DLW+I
Sbjct: 1674 RARALLPRALQSLPSHTHVELTSKFGQLEFRSANGDIERGRTVFEGLLSSFPKKIDLWNI 1733

Query: 1735 YLDQEIRLGDVDLIRGLFERAISL----------------SLPPKKMKFLFKKYLEYEKS 1778
             LD EI+ GD + +R LFER + +                 + PK+ KF FKK+L +E+ 
Sbjct: 1734 LLDLEIKNGDAEQVRRLFERVLGIRDTKKGGAAAAVEASKKVRPKQAKFFFKKWLSFEEK 1793

Query: 1779 V-----GEEERIEYVKQKAMEYVES 1798
            +     G ++ +E +K KA EYV+S
Sbjct: 1794 LASAEGGNDKMVEEIKAKAAEYVKS 1818



 Score =  155 bits (393), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 183/744 (24%), Positives = 326/744 (43%), Gaps = 58/744 (7%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE---------------ANEDNLL 49
           G V+ +N  D+ + LP  L G      ++  +L+ +IE                ++   L
Sbjct: 171 GQVSSINAHDIGLSLPNNLTGYVPLT-SVSKVLEEKIEKILKDDGSDEEEDDDEDDSLDL 229

Query: 50  PTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 106
              F++GQ +   V+       D     +++I LS+       GLS   +     + A V
Sbjct: 230 HKYFYLGQYLRAYVVSAGSNAADASAKSRKRIELSVDPRQANSGLSKSDLVVNSAVQASV 289

Query: 107 KSIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSIDRTRKVVYLS 163
            S+EDHG ++  GL      GF+    +  +     +K G +   +V   +    V+ LS
Sbjct: 290 VSVEDHGLVMDLGLEGGEVKGFMSSKEVDPKTQPSSIKEGSVFLCMVTGQNANGSVIKLS 349

Query: 164 SD-PDTVSKCVTKDLK-GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           ++ P   S   +  L    +I   +PG      +  +   G+    +     TVD+    
Sbjct: 350 ANLPSAGSIKKSHYLSTAPTITSFLPGTAAEILLTDVSSTGMAGKIMGMLDATVDLVQSG 409

Query: 222 NTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH---NRAPPSH---VKV 273
            +    +    Y+   K+  R++   P++    VG +L  ++        P S      +
Sbjct: 410 GSSGKDDLTKKYSTGAKIKGRLVCTFPSAEPYKVGFSLLDHVAKFATEGGPGSSDDAPAI 469

Query: 274 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVR 330
             I  ++KVV+V+ GLG+ + I ST      +V +S +++ +V  +  +   ++  S   
Sbjct: 470 SAIVPEAKVVKVEPGLGVYVQIGST--KHLGFVHVSRLSDGQVETISPELGPFRVDSVHE 527

Query: 331 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFP 385
            R++G+  ++ L     +    +       DV  G VVKGKV    I  +   G IV   
Sbjct: 528 GRVVGYSAIDNLYLLSFEKKVIDQPFLRVEDVTLGAVVKGKVEKLLIGANGVDGLIVALA 587

Query: 386 GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAIL 443
            G+  L P  H ++  +  P KKF  G  +  R+L V  + ++I +T KK+L+ S+ AI 
Sbjct: 588 DGITGLVPSMHFADTPLQFPEKKFHEGMTVSTRILSVNLEKRQIRLTLKKSLLNSESAIW 647

Query: 444 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 503
             Y E T    + G I KI+ HG  V+FY  ++GF P SE+      +PS  + +GQVV 
Sbjct: 648 KDYEEITPGTQSPGTIIKIQPHGAVVQFYGPIRGFLPVSEMSEAYIKDPSQHFRLGQVVN 707

Query: 504 CRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
              + S+ ASR         P   +E      + +  G LVSG V   + +  ++ +   
Sbjct: 708 VHAL-SVDASREKLAVSCKDPETFTEAYRKAFENIHPGMLVSGTVFEKSADDTLLKLDDY 766

Query: 559 GYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINS 614
           G     +  EH+AD    + A+ + S I+ G + ++L+V+D + ++ L+  + + SL  +
Sbjct: 767 GLV-ARLNVEHVADGSPSKQASTL-SKIRVGQKLNELMVIDIQRAHRLIKVTGRQSLKKA 824

Query: 615 AQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 672
           A+   +PS+   +   + V G++ NI   G FV FLG + G  P+    D          
Sbjct: 825 AKHGSIPSEIEDLKEGADVTGFIRNITMNGVFVEFLGGVIGLVPKRLVGDENVNKPDYGM 884

Query: 673 YVGQSVRSNILDVNSETGRITLSL 696
             GQ V + +  V+++  R  LS+
Sbjct: 885 ARGQVVTATVHSVDADFQRFILSM 908



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 178/410 (43%), Gaps = 53/410 (12%)

Query: 52   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 98
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1000 FFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1059

Query: 99   GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 152
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  ++  V +
Sbjct: 1060 GSTWVGFVNNVADDCLWINLS-PNVRGRLRLMDASDDLSLLADVEKHYPVGSAMKVHVSA 1118

Query: 153  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
            +D  +  + LS+   +  K V +D   +S+ +++PG     RV  + E  V++       
Sbjct: 1119 VDADKGRLDLSAKQRS-DKLVFED---VSVGMILPG-----RVTKVTERQVIMQLSKSIV 1169

Query: 213  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 268
            G VD+  + + +    PT   KN+      + A ++ +D  ++ + L+L P  + + + P
Sbjct: 1170 GAVDLIDMADDYTKANPTVCQKNEV-----LRACVIAIDKANKKISLSLRPSKVLSSSLP 1224

Query: 269  SHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 321
               K      Q KV  + RG        GL + +        AYV ISD+++  +++ + 
Sbjct: 1225 VQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGR---DVTAYVRISDLSDSYLKEWKD 1281

Query: 322  KYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSF 378
             ++    V+ R+      +G     LK S  +       T  D+KPG VV GKV  V+ F
Sbjct: 1282 SFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVVTGKVRKVEEF 1341

Query: 379  GAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
            GA +   G   +  LC    M+E  +      ++ G  +  ++L +  K+
Sbjct: 1342 GAFIVIDGSKNISGLCHRSEMAENRVEDARTLYEEGDAVKAKILKIDRKQ 1391



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 152/362 (41%), Gaps = 34/362 (9%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 62
            W G V  V +  L I L   +RG  R  DA D   D  + A+ +   P    VG  +   
Sbjct: 1063 WVGFVNNVADDCLWINLSPNVRGRLRLMDASD---DLSLLADVEKHYP----VGSAMKVH 1115

Query: 63   VLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 122
            V  +D DK         L L        L  E V  GM+L   V  + +   I+     S
Sbjct: 1116 VSAVDADKGR-------LDLSAKQRSDKLVFEDVSVGMILPGRVTKVTERQVIMQLS-KS 1167

Query: 123  FTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTK 175
              G +   ++A++      P +     +L+  V +ID+  K + LS  P  V  S    +
Sbjct: 1168 IVGAVDLIDMADDY-TKANPTVCQKNEVLRACVIAIDKANKKISLSLRPSKVLSSSLPVQ 1226

Query: 176  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 235
            D +  SI  L    +V   V+ + +NG+ ++     T  V I  L +++    WK+ +  
Sbjct: 1227 DKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGRDVTAYVRISDLSDSY-LKEWKDSFQV 1285

Query: 236  HKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLGL 291
             + V  R+   D     + ++L   +L  + +AP +   +K G +    KV +V+     
Sbjct: 1286 DQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVV-TGKVRKVEEFGAF 1344

Query: 292  LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKAS 350
            ++   S  +S   +   S++AE  V      Y+EG  V+ +IL   R  E ++ G LKAS
Sbjct: 1345 IVIDGSKNISGLCHR--SEMAENRVEDARTLYEEGDAVKAKILKIDRKQEKISFG-LKAS 1401

Query: 351  AF 352
             F
Sbjct: 1402 YF 1403


>gi|350636490|gb|EHA24850.1| hypothetical protein ASPNIDRAFT_48843 [Aspergillus niger ATCC 1015]
          Length = 1822

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 365/1345 (27%), Positives = 649/1345 (48%), Gaps = 164/1345 (12%)

Query: 533  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
            V LG++V G V+  ++  N V  ++  +A G + G +P+ H AD     T ++   K  +
Sbjct: 559  VTLGAVVKGKVEKLLIGANGVDGLIVALADGIT-GLVPSMHFAD-----TPLQFPEKKFH 612

Query: 589  E----FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            E      ++L ++ E   + L+ K SL+NS   +  D   I P +   G +  I   G  
Sbjct: 613  EGMTVSTRILSVNLEKRQIRLTLKKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAV 672

Query: 645  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
            V+F G + GF P S+  +    D S+ + +GQ V  + L V++   ++ +S K       
Sbjct: 673  VQFYGPIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKLAVSCKDP----- 727

Query: 705  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES----NDFGVVVSF 760
              +F + +    E I       H G         + G+V E    ++    +D+G+V   
Sbjct: 728  -ETFTEAYRKAFENI-------HPGM-------LVSGTVFEKSADDTLLKLDDYGLVARL 772

Query: 761  EEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
                   G  +      + +  G  + +  ++D+ +A RL+ ++               R
Sbjct: 773  NVEHVADGSPSKQASTLSKIRVGQKLNELMVIDIQRAHRLIKVT--------------GR 818

Query: 820  QAQKKKRKREAS----KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYN 872
            Q+ KK  K  +     +DL     V   +  +  N + +        IG      V D N
Sbjct: 819  QSLKKAAKHGSIPSKIEDLKEGADVTGFIRNITMNGVFVEF--LGGVIGLVPKRLVGDEN 876

Query: 873  TQKFPQKQFLNGQSVIATVMAL------------PSSST-AGRLLLLLKAISETETSSS- 918
              K P      GQ V ATV ++            P+ +T AG           T T  + 
Sbjct: 877  VNK-PDYGMARGQVVTATVHSVDADFQRFILSMNPAEATHAGAKKKAAAKPEPTPTDDAV 935

Query: 919  -----KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 971
                 +  K  S +  G + + +I  ++  ++ ++      GRI ++EV D   ++ +  
Sbjct: 936  ANAIDEGIKSMSDFTFGRVTKCKIVSVRATQVNVQLADNIQGRIDVSEVFDKWEDIKDRK 995

Query: 972  NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLF 1022
                 F+  Q ++ARI+   +  + K         K  ++ELS+KPS L  +   S L  
Sbjct: 996  QPLRFFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAAN-PSPLNL 1054

Query: 1023 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1082
            E+  V +G    G+V  V ++   + +S +++ +L ++D++ + S L + ++ + +G A+
Sbjct: 1055 EQ--VQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASDDLSLLADVEKHYPVGSAM 1112

Query: 1083 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1142
              HV +++ +K  L L  +   D +  + V +           G I+ GR++K+      
Sbjct: 1113 KVHVSAVDADKGRLDLSAKQRSDKLVFEDVSV-----------GMILPGRVTKVTERQ-- 1159

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
            +++Q+   + G V   ++ +          D  + +P +   + + ++  V+ I +  + 
Sbjct: 1160 VIMQLSKSIVGAVDLIDMAD----------DYTKANP-TVCQKNEVLRACVIAIDKANK- 1207

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
               + LSLR S           LS+ +    K +  I+ L  N IV+G+V+ V   G F+
Sbjct: 1208 --KISLSLRPS---------KVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVADNGLFV 1256

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
             + R + A V +S+LSD Y++  +  F + +LV GRV   +    +++++LK S      
Sbjct: 1257 TVGRDVTAYVRISDLSDSYLKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNY 1316

Query: 1323 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYR 1381
            ++ +  L +L  G +V G++++VE +G FI I+ + N+ GLCH SE++E+ V++  T+Y 
Sbjct: 1317 KAPLT-LHDLKPGQVVTGKVRKVEEFGAFIVIDGSKNISGLCHRSEMAENRVEDARTLYE 1375

Query: 1382 AGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN-RSSLL 1440
             G+ VK KILK+D+++ +IS G+K+SYF  + D      ++    +++ +G  +   S  
Sbjct: 1376 EGDAVKAKILKIDRKQEKISFGLKASYFDEEEDEDSEEDDDSEGISLDGLGGVDVEGSDD 1435

Query: 1441 ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1500
            E S V++  +D+E +       +  E     P      D          S N    DEA 
Sbjct: 1436 EESDVSMGGVDLEDDSDDESEQSDDEEMTDAPAKASRQDGGLGAGGFDWSGNNQDDDEAG 1495

Query: 1501 T-IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYM 1559
               D  +   ++ K+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W++YM
Sbjct: 1496 ARSDSDDEEDSRPKKKKNRKPEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLLWLQYM 1555

Query: 1560 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1619
            AF L + +VEKAR IAERAL+TI I ++ EKLNIWVA  NLEN YGN  ++ +  VF+RA
Sbjct: 1556 AFQLELGEVEKAREIAERALRTITIGQDAEKLNIWVAMLNLENTYGN--DDTLEDVFKRA 1613

Query: 1620 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--E 1676
             QY D ++V+   + +Y ++ +N+ AD+L    + KK   S K ++     L       E
Sbjct: 1614 CQYNDTQEVYERTISIYIQSGKNEKADDLFQTALKKKVFGSPKFFINYASFLFDTMAAPE 1673

Query: 1677 GVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSI 1734
              +A++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PK+ DLW+I
Sbjct: 1674 RARALLPRALQSLPSHTHVELTSKFGQLEFRSANGDIERGRTVFEGLLSSFPKKIDLWNI 1733

Query: 1735 YLDQEIRLGDVDLIRGLFERAISL----------------SLPPKKMKFLFKKYLEYEKS 1778
             LD EI+ GD + +R LFER + +                 + PK+ KF FKK+L +E+ 
Sbjct: 1734 LLDLEIKNGDAEQVRRLFERVLGIRDTKKGGAAAAVEASKKVRPKQAKFFFKKWLSFEEK 1793

Query: 1779 V-----GEEERIEYVKQKAMEYVES 1798
            +     G ++ +E +K KA EYV+S
Sbjct: 1794 LASAEGGNDKMVEEIKAKAAEYVKS 1818



 Score =  154 bits (390), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 183/744 (24%), Positives = 325/744 (43%), Gaps = 58/744 (7%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE---------------ANEDNLL 49
           G V+ +N  D+ + LP  L G      ++  +L+ +IE                ++   L
Sbjct: 171 GQVSSINAHDIGLSLPNNLTGYVPLT-SVSKVLEEKIEKILKDDGSDEEEDDDEDDSLDL 229

Query: 50  PTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 106
              F++GQ +   V+       D     +++I LS+       GLS   +     + A V
Sbjct: 230 HKYFYLGQYLRAYVVSAGSNAADASAKSRKRIELSVDPRQANSGLSKSDLVVNSAVQASV 289

Query: 107 KSIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSIDRTRKVVYLS 163
            S+EDHG ++  GL      GF+    +  +     +K G +   +V   +    V+ LS
Sbjct: 290 VSVEDHGLVMDLGLEGGEVKGFMSSKEVDPKTQPSSIKEGSVFLCMVTGQNANGSVIKLS 349

Query: 164 SD-PDTVSKCVTKDLK-GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           ++ P   S   +  L    +I   +PG      +  +   G+    +     TVD+    
Sbjct: 350 ANLPSAGSIKKSHYLSTAPTITSFLPGTAAEILLTDVSSTGMAGKIMGMLDATVDLVQSG 409

Query: 222 NTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLH---NRAPPSH---VKV 273
            +    +    Y+   K+  R++   P++    VG +L  ++        P S      +
Sbjct: 410 GSSGKDDLTKKYSTGAKIKGRLVCTFPSAEPYKVGFSLLDHVAKFATEGGPGSSDDAPAI 469

Query: 274 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVR 330
             I  ++KVV+V+ GLG+ + I ST      +V +S +++ +V  +  +   ++  S   
Sbjct: 470 SAIVPEAKVVKVEPGLGVYVQIGST--KHLGFVHVSRLSDGQVETISPELGPFRVDSVHE 527

Query: 331 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFP 385
            R++G+  ++ L     +    +       DV  G VVKGKV    I  +   G IV   
Sbjct: 528 GRVVGYSAIDNLYLLSFEKKVIDQPFLRVEDVTLGAVVKGKVEKLLIGANGVDGLIVALA 587

Query: 386 GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAIL 443
            G+  L P  H ++  +  P KKF  G  +  R+L V  + ++I +T KK+L+ S+ AI 
Sbjct: 588 DGITGLVPSMHFADTPLQFPEKKFHEGMTVSTRILSVNLEKRQIRLTLKKSLLNSESAIW 647

Query: 444 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 503
             Y E T    + G I KI+ HG  V+FY  ++GF P SE+      +PS  + +GQVV 
Sbjct: 648 KDYEEITPGTQSPGTIIKIQPHGAVVQFYGPIRGFLPVSEMSEAYIKDPSQHFRLGQVVN 707

Query: 504 CRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
              + S+ ASR         P   +E      + +  G LVSG V   + +  ++ +   
Sbjct: 708 VHAL-SVDASREKLAVSCKDPETFTEAYRKAFENIHPGMLVSGTVFEKSADDTLLKLDDY 766

Query: 559 GYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINS 614
           G     +  EH+AD    + A+ + S I+ G + ++L+V+D + ++ L+  + + SL  +
Sbjct: 767 GLV-ARLNVEHVADGSPSKQASTL-SKIRVGQKLNELMVIDIQRAHRLIKVTGRQSLKKA 824

Query: 615 AQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 672
           A+   +PS    +   + V G++ NI   G FV FLG + G  P+    D          
Sbjct: 825 AKHGSIPSKIEDLKEGADVTGFIRNITMNGVFVEFLGGVIGLVPKRLVGDENVNKPDYGM 884

Query: 673 YVGQSVRSNILDVNSETGRITLSL 696
             GQ V + +  V+++  R  LS+
Sbjct: 885 ARGQVVTATVHSVDADFQRFILSM 908



 Score = 67.4 bits (163), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 178/410 (43%), Gaps = 53/410 (12%)

Query: 52   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 98
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1000 FFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1059

Query: 99   GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 152
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  ++  V +
Sbjct: 1060 GSTWVGFVNNVADDCLWINLS-PNVRGRLRLMDASDDLSLLADVEKHYPVGSAMKVHVSA 1118

Query: 153  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
            +D  +  + LS+   +  K V +D   +S+ +++PG     RV  + E  V++       
Sbjct: 1119 VDADKGRLDLSAKQRS-DKLVFED---VSVGMILPG-----RVTKVTERQVIMQLSKSIV 1169

Query: 213  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 268
            G VD+  + + +    PT   KN+      + A ++ +D  ++ + L+L P  + + + P
Sbjct: 1170 GAVDLIDMADDYTKANPTVCQKNEV-----LRACVIAIDKANKKISLSLRPSKVLSSSLP 1224

Query: 269  SHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 321
               K      Q KV  + RG        GL + +        AYV ISD+++  +++ + 
Sbjct: 1225 VQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGR---DVTAYVRISDLSDSYLKEWKD 1281

Query: 322  KYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSF 378
             ++    V+ R+      +G     LK S  +       T  D+KPG VV GKV  V+ F
Sbjct: 1282 SFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVVTGKVRKVEEF 1341

Query: 379  GAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
            GA +   G   +  LC    M+E  +      ++ G  +  ++L +  K+
Sbjct: 1342 GAFIVIDGSKNISGLCHRSEMAENRVEDARTLYEEGDAVKAKILKIDRKQ 1391



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 152/362 (41%), Gaps = 34/362 (9%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 62
            W G V  V +  L I L   +RG  R  DA D   D  + A+ +   P    VG  +   
Sbjct: 1063 WVGFVNNVADDCLWINLSPNVRGRLRLMDASD---DLSLLADVEKHYP----VGSAMKVH 1115

Query: 63   VLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 122
            V  +D DK         L L        L  E V  GM+L   V  + +   I+     S
Sbjct: 1116 VSAVDADKGR-------LDLSAKQRSDKLVFEDVSVGMILPGRVTKVTERQVIMQLS-KS 1167

Query: 123  FTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTK 175
              G +   ++A++      P +     +L+  V +ID+  K + LS  P  V  S    +
Sbjct: 1168 IVGAVDLIDMADDY-TKANPTVCQKNEVLRACVIAIDKANKKISLSLRPSKVLSSSLPVQ 1226

Query: 176  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 235
            D +  SI  L    +V   V+ + +NG+ ++     T  V I  L +++    WK+ +  
Sbjct: 1227 DKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGRDVTAYVRISDLSDSY-LKEWKDSFQV 1285

Query: 236  HKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLGL 291
             + V  R+   D     + ++L   +L  + +AP +   +K G +    KV +V+     
Sbjct: 1286 DQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVV-TGKVRKVEEFGAF 1344

Query: 292  LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKAS 350
            ++   S  +S   +   S++AE  V      Y+EG  V+ +IL   R  E ++ G LKAS
Sbjct: 1345 IVIDGSKNISGLCHR--SEMAENRVEDARTLYEEGDAVKAKILKIDRKQEKISFG-LKAS 1401

Query: 351  AF 352
             F
Sbjct: 1402 YF 1403


>gi|260950407|ref|XP_002619500.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720]
 gi|238847072|gb|EEQ36536.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720]
          Length = 1677

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 386/1497 (25%), Positives = 692/1497 (46%), Gaps = 177/1497 (11%)

Query: 362  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
            V PG +V   +  +   G   +  G V A   LPH+ E+ + K    F +G+ +  R++G
Sbjct: 292  VHPGTLVNAIIAELSDDGVAARLFGMVDASFTLPHVEEYALEKLKNSFGIGSTVRARIIG 351

Query: 422  VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI--TKIEKHGC---FVRFYNGVQ 476
               +  T     +   + LA+      +       G+I  + IE  G    F+    G  
Sbjct: 352  TLLQNGTKKFILSRATAPLALQPELDSSALEAFPVGFIFDSGIEVVGADSDFIYLSTGSH 411

Query: 477  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN--LSFMMKPTR-----VSE 529
              A   +  +DP  +P+  Y VG     R++       RI+  L   + P       VS 
Sbjct: 412  -MAQVHKSQVDPELDPNMNYPVGSKHNARVL----GYNRIDNLLVVTLNPKLIASKFVSA 466

Query: 530  DDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
            DD V +G  +  V +  +   A  + V   G  +  +P  H++D          ++ P  
Sbjct: 467  DD-VPVGEYIPAVEIIKILDEAKGMIVKIFGDFEALVPANHMSDI--------KLVYPER 517

Query: 589  EFD-----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY-----VCNI 638
            +F      +  VL      L ++ + SL+N    +  DA      +VV G+     V   
Sbjct: 518  KFKVGGKVKGRVLYKNGKKLFVTLRKSLVN----MEDDAIVSDIENVVVGFKTTAIVDRF 573

Query: 639  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            +  G  V F G+L  + P+S+  +    +      +GQ+V   IL VN+E  +I+++L+Q
Sbjct: 574  VPGGALVTFFGKLRAYLPKSEISETFVEEAKDYLKLGQAVTVRILSVNAEENKISVTLRQ 633

Query: 699  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVV 757
            S                         ++ +  +++ +E   IG +++E  + E     V+
Sbjct: 634  S-------------------------TELSNKQIEHLESISIGRTLVEANIVEKTKEAVI 668

Query: 758  VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV---DLSLKTVFIDRFRE 814
            +  E  S++ G I+ + L+    E   +I   +      E LV   D+  +TV     + 
Sbjct: 669  IELE-GSNLRGVISTNHLSDGNYEENRIIYKNLEIGGSIEVLVLEKDIRARTVIASAKKS 727

Query: 815  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 874
              +  + +      E   D+ V   V   ++ V    L +S       +  A  +  +  
Sbjct: 728  LITAARTETLPVHYE---DIHVGSMVPGYIKSVTNLGLFVSFGGRLTGLVLAKNATNDPT 784

Query: 875  KFPQKQFLNGQSVIATV-----------MALPSSSTAGRLLLLLKAISETETSSSKRAKK 923
            +    +F   QSV+  V           ++L SS +AG         S+       + K 
Sbjct: 785  EDLSSKFYKNQSVVCDVIKTDDDNKRFLLSLTSSDSAGAF-----ESSKLSNPVDAQMKS 839

Query: 924  KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQ 981
            K+ Y VG      I  I+P  L+++      GR+   +      ++ +  N  ++F +G+
Sbjct: 840  KTDYAVGVSTFGVIDSIEPGYLKIRLADNLEGRVEANQCIRSWKSIKDPKNPLASFTVGE 899

Query: 982  TVTARIIAKSNKPDMK-KSFLWELSIKPSM---LTVS--EIGSKLLFEE---CDVSIGQR 1032
             V  +++      D K  SF    + K +    LT +  ++ SK  ++     D+++G  
Sbjct: 900  KVPVKVLGTY---DYKWHSFTTAAAFKKTTVLSLTTAKDQLKSKSPYKPDQLSDITVGSE 956

Query: 1033 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1092
               Y+ +  N  A ++++  +K ++ + + + + S+  +F   F +G A+  +V+ I+ E
Sbjct: 957  YVVYIERFHNGTAKVSLTPSIKGEISVYNLSDDMSKYSKFDESFPLGTALKANVIGIDFE 1016

Query: 1093 KKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPH 1150
              +++L  R                N+ +F  +  GD    ++ K+      ++V++ P 
Sbjct: 1017 HGMVKLSAR--------------KQNLTSFTQLKVGDQYPAKVFKVTKSF--VLVELAPG 1060

Query: 1151 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1210
            L G  + T                   D L  YD         L++  T      V +++
Sbjct: 1061 LVGYSYIT-------------------DALDDYD---------LKLEETYHINQPVAVTI 1092

Query: 1211 RSSLD--GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
              +L+  G  S +  +  T  D P   +  I +L    +V+G++K + + G ++ L R L
Sbjct: 1093 TETLENEGKFSVSLRNEKTAKDKP---VNSISELHRGDVVKGFIKAINNAGLYVSLGRDL 1149

Query: 1269 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1328
             A V +SN+SD ++   +K F   + + G+++  + +  R+ +TLK S+      ++   
Sbjct: 1150 FALVPVSNISDAFLVDWKKFFKPFQSIVGKIVQCK-VEGRITMTLKESE-LNGHLADYKT 1207

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
               L +G+I  G +K+V  YG+F+ ++ T + GLCH SE++++ V+N   ++  G++VKV
Sbjct: 1208 FDELEIGEIYDGTVKKVADYGVFVKLDGTAVDGLCHRSEIADNQVENAAALFAEGDRVKV 1267

Query: 1389 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQ 1448
            KILK+ K+K+++SLGMK+SYF    +N   S + E  EA ++      +S  E  +    
Sbjct: 1268 KILKIFKDKKQLSLGMKASYFTEADEN---SDDVEMAEASDDDDEEEVNSEDEVMAEGFS 1324

Query: 1449 DMDMESEDGGSLVLAQIESRASVPP----LEVNLDDEQPDMDNGISQNQGHTDEAKTIDE 1504
            D D  S+       +  E   + P     L  N  D    + +    N+  +DE +   E
Sbjct: 1325 DNDQSSDSEDEEEESAKEGTDAAPTGLSGLSTNGFDWTASILDQAEDNESSSDEDEDFTE 1384

Query: 1505 KNNRHAKKKEK--EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1562
             + +  +K +K  E++  EI A         AP +  +FER++  +P+SS +W+ YM+F 
Sbjct: 1385 SHKKRKRKGKKNVEDKTSEINAR--------APESVQDFERMIIGNPDSSVLWMNYMSFQ 1436

Query: 1563 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1622
            L + +++K+R IAERAL+TIN REE EK+NIW+A  NLEN +G+  EE++   F+RA+Q+
Sbjct: 1437 LQLGEIDKSREIAERALKTINYREEQEKMNIWIAILNLENTFGS--EESLDAAFKRAVQH 1494

Query: 1623 CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAV 1681
             D   +H  L+G+Y+ +E+   ADEL   M KKF  +  VW+     L+ ++  +    +
Sbjct: 1495 MDSLTMHQKLIGIYQLSEKFDKADELYRVMTKKFAKNVNVWVSFGSSLMDRKLFDDAHEL 1554

Query: 1682 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1741
            + RAL SLP+  HI  + + A LEF  G  ++GRS+FEG++++ PKR DLW++Y+DQEI+
Sbjct: 1555 LARALQSLPKSSHIDVVRKFAQLEFAKGDPEQGRSLFEGLVTDAPKRIDLWNVYIDQEIK 1614

Query: 1742 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             GD + I  LFER ++  L  K+ KF F K+L YE+  G E+    VK  A+EYV+S
Sbjct: 1615 QGDREKIVSLFERVVTKKLSRKQAKFFFSKWLGYEEEHGSEQSASRVKALAVEYVQS 1671



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 188/678 (27%), Positives = 308/678 (45%), Gaps = 47/678 (6%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
           L ++F  GQ +  IV    +     G+R + LS+  S +   +  +    G ++ A VKS
Sbjct: 161 LASLFEPGQWLRAIVTPTPE-----GQRGLHLSIAPSDVNASMESDDFTPGNIVQASVKS 215

Query: 109 IEDHGYILHFGLPSFTGFLPRNNL--AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 166
           IEDHG +L+ G+   +GFL +  L  A+        G ++   V S D  R V    ++ 
Sbjct: 216 IEDHGVVLNLGVGKLSGFLSKKELKKADIPLSSFTVGKVILTSVASAD-ARTVSLRPAEK 274

Query: 167 DTVS-KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 225
           + VS K V   +   SID + PG +V+  +  + ++GV          +  + H++  + 
Sbjct: 275 ENVSKKTVVTTIS--SIDAVHPGTLVNAIIAELSDDGVAARLFGMVDASFTLPHVEE-YA 331

Query: 226 TTNWKNDYNQHKKVNARI---LFVDPT-----SRAVG-LTLNPYLLHNRAPPSHVKVGDI 276
               KN +     V ARI   L  + T     SRA   L L P L  + +      VG I
Sbjct: 332 LEKLKNSFGIGSTVRARIIGTLLQNGTKKFILSRATAPLALQPEL--DSSALEAFPVGFI 389

Query: 277 YDQS-KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 335
           +D   +VV  D     L     +  S  A V  S V  E    +   Y  GS    R+LG
Sbjct: 390 FDSGIEVVGADSDFIYL-----STGSHMAQVHKSQVDPELDPNM--NYPVGSKHNARVLG 442

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALC 392
           +  ++ L    L          +  DV  G  +   ++I +  ++ G IV+  G  +AL 
Sbjct: 443 YNRIDNLLVVTLNPKLIASKFVSADDVPVGEYIPAVEIIKILDEAKGMIVKIFGDFEALV 502

Query: 393 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSK-LAILSSYAEATD 451
           P  HMS+ ++V P +KFKVG ++  RVL    K++ VT +K+LV  +  AI+S       
Sbjct: 503 PANHMSDIKLVYPERKFKVGGKVKGRVLYKNGKKLFVTLRKSLVNMEDDAIVSDIENVVV 562

Query: 452 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 511
              T   + +    G  V F+  ++ + P+SE+      E      +GQ V  RI+S   
Sbjct: 563 GFKTTAIVDRFVPGGALVTFFGKLRAYLPKSEISETFVEEAKDYLKLGQAVTVRILSVNA 622

Query: 512 ASRRINLSFMMKPTRVSEDDLVKLGSLVSGV----VDVVTPNAVVVYVIAKGYS-KGTIP 566
              +I+++ + + T +S   +  L S+  G      ++V      V +  +G + +G I 
Sbjct: 623 EENKISVT-LRQSTELSNKQIEHLESISIGRTLVEANIVEKTKEAVIIELEGSNLRGVIS 681

Query: 567 TEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSA--QQLPSD 621
           T HL+D + E   ++   ++ G    ++LVL+ +  +  ++ SAK SLI +A  + LP  
Sbjct: 682 TNHLSDGNYEENRIIYKNLEIGGSI-EVLVLEKDIRARTVIASAKKSLITAARTETLPVH 740

Query: 622 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 681
              IH  S+V GY+ ++   G FV F GRLTG      A +    DLS  +Y  QSV  +
Sbjct: 741 YEDIHVGSMVPGYIKSVTNLGLFVSFGGRLTGLVLAKNATNDPTEDLSSKFYKNQSVVCD 800

Query: 682 ILDVNSETGRITLSLKQS 699
           ++  + +  R  LSL  S
Sbjct: 801 VIKTDDDNKRFLLSLTSS 818



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 109/495 (22%), Positives = 210/495 (42%), Gaps = 83/495 (16%)

Query: 930  GSLVQAEITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNVVENLFSNFKIGQTV-TARI 987
            G++VQA +  I+   + L  G+G   G +   E+   K+++     S+F +G+ + T+  
Sbjct: 206  GNIVQASVKSIEDHGVVLNLGVGKLSGFLSKKELK--KADIP---LSSFTVGKVILTSVA 260

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1047
             A +    ++ +    +S K  + T+S I +        V  G  V   + ++ ++    
Sbjct: 261  SADARTVSLRPAEKENVSKKTVVTTISSIDA--------VHPGTLVNAIIAELSDD---- 308

Query: 1048 TISRHLKAQLF-ILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSI---NKEKKLL-- 1096
                 + A+LF ++D+++     E   L++ +  F IG  V   ++     N  KK +  
Sbjct: 309  ----GVAARLFGMVDASFTLPHVEEYALEKLKNSFGIGSTVRARIIGTLLQNGTKKFILS 364

Query: 1097 ----RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1152
                 L L+P          ++ +  ++ F   G I    I  + +    + +  G H+ 
Sbjct: 365  RATAPLALQP----------ELDSSALEAF-PVGFIFDSGIEVVGADSDFIYLSTGSHM- 412

Query: 1153 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1212
             +VH +++      DP       + DP   Y  G     +VL  +R       + ++L  
Sbjct: 413  AQVHKSQV------DP-------ELDPNMNYPVGSKHNARVLGYNRIDN---LLVVTLNP 456

Query: 1213 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1272
             L      ++ D+      P   + KI D +  MIV+ +       G F       +A V
Sbjct: 457  KLIASKFVSADDVPVGEYIPAVEIIKILDEAKGMIVKIF-------GDF-------EALV 502

Query: 1273 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1332
              +++SD  +  PE++F +G  V GRVL      K++ VTL+ S       + ++++ N+
Sbjct: 503  PANHMSDIKLVYPERKFKVGGKVKGRVLYKN--GKKLFVTLRKSLVNMEDDAIVSDIENV 560

Query: 1333 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1392
             VG      + R    G  +T     L      SE+SE  V+  +   + G+ V V+IL 
Sbjct: 561  VVGFKTTAIVDRFVPGGALVTFFG-KLRAYLPKSEISETFVEEAKDYLKLGQAVTVRILS 619

Query: 1393 VDKEKRRISLGMKSS 1407
            V+ E+ +IS+ ++ S
Sbjct: 620  VNAEENKISVTLRQS 634


>gi|326923909|ref|XP_003208175.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Meleagris
            gallopavo]
          Length = 2041

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 371/1395 (26%), Positives = 645/1395 (46%), Gaps = 152/1395 (10%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI---EANED-NLLPTIF 53
            M L G + EV   +LVI LP GL G   + + +DA   +L+ ++   E  ED N L  ++
Sbjct: 290  MLLLGCIKEVTFFELVISLPNGLTGFVPVTQISDAYSELLNEQVTQGELLEDLNSLSDLY 349

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  ++  K   G+R I LS+    + KGL+   +  GM+L+ +V+S+EDHG
Sbjct: 350  SPGMLVRCVVTSVE--KSADGRRSIKLSINPKNVNKGLNASALTSGMLLSGFVRSVEDHG 407

Query: 114  YILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP         A   G D+K G  L  ++  +    +VV LS+D   
Sbjct: 408  YLIDIGVRGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCLIEEVKNEGRVVRLSADRSE 467

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            V+  +  + +  ++  L+PG++V  +VQ +   G+ L+FL+ FTG VD  H+     T  
Sbjct: 468  VAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGISLTFLSSFTGIVDFMHVDPEKST-- 525

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
               +Y+ ++ V A IL   PTS+ V LTL    L     P+ +   ++G + ++S V   
Sbjct: 526  ---NYSPNQVVKACILSTHPTSKVVHLTLRQAFLCPGGSPNQLSNDRIGAVVEESTVKAF 582

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G + ++    +   A+  +  +++         +K G   + RI+ +  ++ +   
Sbjct: 583  YKQFGAVFELDDGML---AFARLKHLSKTRKSFKPAAFKAGCKHKCRIIDYSLMDEMCIV 639

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             LK    E     + D+  G V++GKV+++   G  V+   G+K L P  H+++  + +P
Sbjct: 640  SLKHQIIEARFLRYQDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADVILKQP 699

Query: 406  GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ VG E+  RVL    + K++ +T KKTLV+SKL +LSSY +A   LITHG++    
Sbjct: 700  EKKYNVGDEVRCRVLECNPEEKKLFLTLKKTLVQSKLPVLSSYEDAEPGLITHGFVVCAR 759

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
            + GC V+FYN V+G  P++EL  +P   P  ++H GQVVK  ++   P   R+ LSF + 
Sbjct: 760  EFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQERLLLSFRLS 819

Query: 524  PTRVSEDDL-----------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSK-GTIPTEHLA 571
               V E               ++G +V   V     N + V ++  G      +PT HL+
Sbjct: 820  SKPVPEGRTECTPKKKQQVKYQIGEMVDVKVLKKNENGLEVSILEDGDDVIAWLPTGHLS 879

Query: 572  DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNS 629
            D + ++ ++   ++ G    +++ L ++   ++L  K ++I++ Q  Q+    S I P  
Sbjct: 880  DFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVRSFSEIQPGV 939

Query: 630  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
            ++ GYV  ++  G FV F   +TG AP+    D    D    + VGQ+V + ++ ++ E 
Sbjct: 940  LLTGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEK 999

Query: 690  GRITLSLKQSCCSSTDA-----SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
             R+ L+LK S CSS D+     S + ++F   E+I  L   + +G   + +   + G  +
Sbjct: 1000 QRVLLNLKVSECSSGDSAAESFSLLNQYFKEMEEIKNLLRRRESGLA-QCLSELVPGKEL 1058

Query: 745  EGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVD 801
            +  V +  + G   +    S V G+    TH+ L G  V  G   +  +L V      V 
Sbjct: 1059 QLVVQDVMEDG--SALFSGSCVRGWTVTATHYHLGGKKVVPGEKAKGLVLHVDAITSKVY 1116

Query: 802  LSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVNAIVEIVKENYLVLSLPEYN 860
            +SL+   +                 K+E SK  L  +    AIV+ + E + ++SL +  
Sbjct: 1117 VSLREELL-----------------KKEPSKXRLTKNSQHPAIVQHIAEEFAIVSLLDSG 1159

Query: 861  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS----------TAGRLLLLLKA 909
                    S +N T +F  ++   GQ + AT+  + ++           T     +  + 
Sbjct: 1160 RLAAVPIASHFNDTFRFDSEKMKVGQRIYATLKTVKANDLGVVLAVQDPTKKNAFVRDRK 1219

Query: 910  ISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV 969
             SET    +  A  K S  +G +V   +  +KP  + +       G IH +++ D+    
Sbjct: 1220 ESETALEETLAAAVKHSLSLGDIVTGTVKSVKPTHVTVAIDDKLTGSIHASQILDEVPIY 1279

Query: 970  VENLFSNFKIGQTVTARIIAKSN----------KPDMKKSFLWELSIKPSMLTVSEIGSK 1019
                ++  K GQ VTAR+I   +           P   +S + ELSI+P     SEI  K
Sbjct: 1280 SFPTYT-LKAGQKVTARVIGGRDVNTHRYLPITHPHFTRS-VPELSIRP-----SEIEGK 1332

Query: 1020 ---LLFEECD----VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1070
               +  + C+     ++GQ VT +V  Y +   W  + ++  ++ ++  L  +     L+
Sbjct: 1333 VETMRDDTCEKLGPYNVGQTVTCFVRKYNILKNWLEVEVAPDVRGRVPRLLLSLNTKVLK 1392

Query: 1071 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG 1130
              ++ F  G+A++  V   +  +  L L L   Q                  +  G I  
Sbjct: 1393 HPEKNFKNGQALSATVTGTDATETNLFLSLTGIQS-----------------LEPGTITV 1435

Query: 1131 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1190
            G ++K++  + GL + +     G+V    L +         Y E    PLS +  G+ V+
Sbjct: 1436 GMVAKMIPHI-GLTITLPGGKTGKVSIFHLSD--------KYTE---SPLSDFKIGKVVR 1483

Query: 1191 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1250
            C +L           ++LSLR S   ++  NSS +          +  I+D+    +++G
Sbjct: 1484 CYILS-----NENGKIQLSLRQSR--LNPKNSSKVE------DAEITSIKDVKKGQLLRG 1530

Query: 1251 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSK 1307
            YVK+VT  G F  LS  L  ++L  N+S  +V+     EK  P GKL+  +VL V     
Sbjct: 1531 YVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLDVNKNEN 1590

Query: 1308 RVEVTLKTSDSRTAS 1322
             VE++L   D+   S
Sbjct: 1591 HVELSLLPEDTEMPS 1605



 Score =  275 bits (703), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/265 (50%), Positives = 185/265 (69%), Gaps = 3/265 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P++ D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI  REE EKLN+W
Sbjct: 1772 PQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQEKLNVW 1831

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            VA  NLEN YG   EE ++KVF+RA+QY +P KV   L  +Y  +E+ K A+EL + M++
Sbjct: 1832 VALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLR 1889

Query: 1655 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            +F+    VWL+    LLKQ Q E    +++RAL +LP  +H+  IS+ A LEF+ G  + 
Sbjct: 1890 RFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFRFGDPEH 1949

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
             +++FE  L+ YPKRTD+WSIY+D  I+ G    +R +FER I L+L PKKMKF FK+YL
Sbjct: 1950 AKALFESTLNSYPKRTDIWSIYMDIMIKQGSQKEVRDIFERVIHLNLAPKKMKFFFKRYL 2009

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVES 1798
            +YEK  G  E +  VK  A+EYVE+
Sbjct: 2010 DYEKKYGTTETVMAVKTAALEYVEA 2034



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 8/173 (4%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            + +D+    ++QG V ++   G  + ++  +   V   +L+D  ++ PEK++ +G  V  
Sbjct: 652  RYQDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADVILKQPEKKYNVGDEVRC 711

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITI 1354
            RVL   P  K++ +TLK    +T  QS++  LS   +   G I  G +     +G  +  
Sbjct: 712  RVLECNPEEKKLFLTLK----KTLVQSKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKF 767

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             N ++ GL   +ELS + +   + ++  G+ VKV +LK + ++ R+ L  + S
Sbjct: 768  YN-DVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQERLLLSFRLS 819



 Score = 40.8 bits (94), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSE--INNLSNLHVGDIVIGQIKRVESYGLFI 1352
            V  RV+ +     R+ +  + S   +A Q E  + + S +  G ++ G +++V  +G+F+
Sbjct: 897  VLPRVMCLSDKGDRI-ILCRKSAVISAVQEEQVVRSFSEIQPGVLLTGYVRKVMPFGVFV 955

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
                  + GL     +S+  V + +  +  G+ V  K++ +D+EK+R+ L +K S
Sbjct: 956  EFP-FGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLNLKVS 1009


>gi|302505220|ref|XP_003014831.1| hypothetical protein ARB_07392 [Arthroderma benhamiae CBS 112371]
 gi|291178137|gb|EFE33928.1| hypothetical protein ARB_07392 [Arthroderma benhamiae CBS 112371]
          Length = 1820

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 388/1412 (27%), Positives = 665/1412 (47%), Gaps = 187/1412 (13%)

Query: 476  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 532
            QGF   S L    +D        Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 502  QGFVHLSRLADGRVDSISSIEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 558

Query: 533  VKL-----GSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSV 583
             +L     GS+V G ++  ++ P  +   +++   S  G +P  H+AD  L+H    +  
Sbjct: 559  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMADTKLQHP---EKK 615

Query: 584  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 616  FREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 675

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 676  AIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNIHALTVDAENERLVVSCKDPSTV 735

Query: 703  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 762
            + D    Q  F                      E    G V+ G V E +   +++  ++
Sbjct: 736  TAD---YQSAF----------------------ENVHPGLVVSGTVFEKSSDDLLIKLQD 770

Query: 763  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 812
               +    + H   G++ +  S +             +  V K+ RL++++ K       
Sbjct: 771  SGLIARLTSDHISDGSSTKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATL---- 826

Query: 813  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 871
                  ++A  + R     +D+     V  IV+ I+ E   V  L      I    V D 
Sbjct: 827  ------KEAAAEGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDD 880

Query: 872  NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS------ETETSSSKRA---- 921
            +  + P   +   Q + ATV A+   S   R LL LK +S      ++ ++S K+A    
Sbjct: 881  HASR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVSKLKQQSDSSSASEKKAPAVV 937

Query: 922  ---------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 972
                     K      VG + +A+IT +K  +L +       GRI I+E+ D   ++ + 
Sbjct: 938  LNNPIDEELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDR 997

Query: 973  L--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1021
                 +F     +  R++   +  + K         K  ++ELS K S L  SE    L 
Sbjct: 998  KRPLKSFHSKAILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEF-KPLH 1056

Query: 1022 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1081
             E+  + +G R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A
Sbjct: 1057 LEQ--LKVGDRYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSA 1114

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
            +   V  I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI     
Sbjct: 1115 LQVAVTGIDVEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR-- 1163

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
             ++VQI  ++ G +   ++ +          D  + +P + + + + ++  V+++    +
Sbjct: 1164 QVLVQINDNVVGAISLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK 1212

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
                +  S+R S           LS+ +      +  I++L    IV+G+V+ V + G F
Sbjct: 1213 ---KISFSVRPS---------KVLSSSLAVVDPEITSIDNLKVGQIVRGFVRRVDNIGVF 1260

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            + L   + A + +S+LSD +++  + EF + +LV GR+  V+  + +++++LK S +   
Sbjct: 1261 VTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKIQMSLKKS-ALDP 1319

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1380
            +     NL +L +G IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y
Sbjct: 1320 NYKPPFNLKDLKIGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLY 1379

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD--EAIEEVGSYNRSS 1438
               + VK K+LKVD EK +I+LG+K+SYF++      +  EEESD   + +E G      
Sbjct: 1380 EKDDIVKAKVLKVDLEKGQIALGLKASYFRD------LPEEEESDANSSDDEAGGIK--- 1430

Query: 1439 LLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD-------MDNGIS- 1490
             L+  S +  D+ M    GG  +  + +        E    +  PD       + +G   
Sbjct: 1431 -LDVGSDSDDDVSM----GGVDLEGEDDKEEEEDSDEDIEMENAPDSTKKGGLVTSGFDW 1485

Query: 1491 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1550
               G  D  +T DE        K K+ R+ EI+      L+ + P+T  ++ERL+   P+
Sbjct: 1486 TGDGDKDMNETADESTEDDGATKRKKRRKAEIQVDRTGDLDANGPQTVADYERLLLGEPD 1545

Query: 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610
            SS +W+KYMAF L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++
Sbjct: 1546 SSLLWLKYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DD 1603

Query: 1611 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1670
             + +VF+ A +Y D  +++  ++ ++ ++ + + ADEL    +KK   S   +       
Sbjct: 1604 TLDEVFKSACEYNDAHEIYDRMISIFIQSGKAEKADELFQTALKKKVSSTPDFFLNYANF 1663

Query: 1671 LKQQQEGVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEY 1725
            L    E  Q    ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +
Sbjct: 1664 LFDTMEAPQRGRDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSF 1723

Query: 1726 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLF 1769
            PKR DLW++ LD EI++GD + +R LFER + +                 L  K+ KFLF
Sbjct: 1724 PKRIDLWNVLLDLEIKVGDEEQVRRLFERVLGIGHGVVAADGTKGGPKKKLKEKQAKFLF 1783

Query: 1770 KKYLEYEKSV---GEEERIEYVKQKAMEYVES 1798
            KK+L +E+ +   G+   ++ VK +A +YV S
Sbjct: 1784 KKWLAFEEKIAPEGDTRMVDEVKARAADYVRS 1815



 Score =  204 bits (518), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 299/1279 (23%), Positives = 537/1279 (41%), Gaps = 143/1279 (11%)

Query: 2    KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA-------------NEDNL 48
            ++ G V+ +   D+ + LP  L G     +A+   L  ++EA             ++D  
Sbjct: 173  RILGQVSSIGLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEEDEDDDLE 231

Query: 49   LPTIFHVGQLVSCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
            L     VGQ +   V   ++ +DD+K   K+ I LS+       GL+   +     + A 
Sbjct: 232  LKNYVRVGQYLRAAVTATIRNEDDRKVKNKKHIELSIEPHAANSGLTKADMVVNATVQAS 291

Query: 106  VKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVV 160
            V S+EDHG ++  GL      GF+    L   +G+D   VK G +   +V   + +  V+
Sbjct: 292  VISVEDHGLVMDLGLEDNEAKGFISSRELP--AGVDISTVKEGSVFLCIVTGQNASGTVI 349

Query: 161  YLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 218
             LS+D  +              +I+  +PG      +  +   G++   +      VD+ 
Sbjct: 350  KLSADLPSAGSVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVI 409

Query: 219  HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN----------PYLLHNRAPP 268
            H   +    +    Y+   K+  R++   P+S  V L  +             L N A  
Sbjct: 410  HSGASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGADD 469

Query: 269  SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKE 325
                + DI  + KV  VD  LGL + + ST      +V +S +A+   + +  +E  YK 
Sbjct: 470  DLPSISDIIPEVKVTYVDSSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSIEGPYKV 527

Query: 326  GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GA 380
            GS    RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I  +   G 
Sbjct: 528  GSTHEGRIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGL 587

Query: 381  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS 438
            IV     +  L P  HM++ ++  P KKF+ G ++  RVL V  + +++ +T KK+L+ S
Sbjct: 588  IVSLTDSISGLVPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLKKSLLNS 647

Query: 439  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
              A    Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + V
Sbjct: 648  DSAPWKDYESISAGSRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTV 707

Query: 499  GQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVV 553
            GQVV    ++    + R+ +S    P+ V+ D     + V  G +VSG V   + + +++
Sbjct: 708  GQVVNIHALTVDAENERLVVS-CKDPSTVTADYQSAFENVHPGLVVSGTVFEKSSDDLLI 766

Query: 554  YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYS 610
             +   G     + ++H++D      T   + I+ G + D LLV   + S+ L+  + K +
Sbjct: 767  KLQDSGLI-ARLTSDHISDGSSTKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKAT 825

Query: 611  LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
            L  +A +  LP+    I     V G V NII  G FV FL  LTG  P+    D   +  
Sbjct: 826  LKEAAAEGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHASRP 885

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAMLQ 723
               Y   Q + + +  V  ++ R  LSLK     +    S+ AS        E+K   + 
Sbjct: 886  DFGYSRFQVISATVCAVQEDSDRFLLSLKPVSKLKQQSDSSSAS--------EKKAPAVV 937

Query: 724  SSKHNGSELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHH 773
             +     ELK +E  ++G + + K+    D    VV        +   E  D +  I   
Sbjct: 938  LNNPIDEELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDR 997

Query: 774  QLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 831
            +    +  S +++   +L +  A+  + + +S ++  +  +  +      Q  + K    
Sbjct: 998  KRPLKSFHSKAILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEFKPLHL 1057

Query: 832  KDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIA 889
            + L V       V  + E+ L L++ P     +    +S D + +   QK F  G ++  
Sbjct: 1058 EQLKVGDRYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQV 1117

Query: 890  TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF 949
             V  +       RL L  +  S  +T +     K      G ++   +T+I   ++ ++ 
Sbjct: 1118 AVTGIDVEKN--RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLVQI 1169

Query: 950  GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPS 1009
                 G I + ++ DD + V     +NF   + +   ++   + P+ K SF    S++PS
Sbjct: 1170 NDNVVGAISLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKISF----SVRPS 1221

Query: 1010 MLTVSEIG--SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             +  S +      +    ++ +GQ V G+V +VDN    +T+   + A  +I  S    S
Sbjct: 1222 KVLSSSLAVVDPEITSIDNLKVGQIVRGFVRRVDNIGVFVTLGHDVTA--YIRVSDLSDS 1279

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----------PFQDGISDKTVDISND 1117
             L+E++  F + + V G +  ++K+   +++ L+          PF              
Sbjct: 1280 FLKEWKDEFQVDQLVQGRLTVVDKDNNKIQMSLKKSALDPNYKPPF-------------- 1325

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
            N++  +  G IV G++ K+      + +    +L G  H +E+    V D        Q 
Sbjct: 1326 NLKD-LKIGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT------QL 1378

Query: 1178 DPLSGYDEGQFVKCKVLEI 1196
                 Y++   VK KVL++
Sbjct: 1379 -----YEKDDIVKAKVLKV 1392


>gi|406867357|gb|EKD20395.1| rRNA biogenesis protein RRP5 [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1789

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 276/896 (30%), Positives = 486/896 (54%), Gaps = 83/896 (9%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN--LFSNFKIGQTVTARI 987
            G L +A+I+ +K  ++ ++      GRI ++++ D   ++ +      +F   Q +  R+
Sbjct: 932  GRLTKAKISSVKETQINVQLADNIQGRIDVSQIFDSFDDIKDRKRPVRSFSPKQILNVRV 991

Query: 988  IAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1038
            +   +  + +         K+ ++ELS KPS     +    L  ++  V +G     YV 
Sbjct: 992  LGIHDAKNHRFLPISHRSGKTMVFELSAKPSDQN-DDPKEPLALDK--VKVGSSWVAYVN 1048

Query: 1039 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1098
             +  E+  + +S +++ ++  L+ + + S+L+  +  F IG A+  HV  ++     L L
Sbjct: 1049 NIKEEYVWVNLSPNVRGRIPALELSEDVSKLKNLETHFPIGSAIKVHVKHVDAGNNRLDL 1108

Query: 1099 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1158
                 Q   S   + + +      + +G +V G+++K  S    ++VQ+  +L   V+ T
Sbjct: 1109 SALSSQ---SSGPITLKS------LSKGMVVTGKVTK--STERHIMVQLSDNLSAPVNLT 1157

Query: 1159 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1218
            +L +          D  + DP + Y +G+ V+  V+++    +    + LS R S     
Sbjct: 1158 DLAD----------DYSEADP-TKYSKGEIVRVCVVDVDLPNK---KIRLSTRPS----- 1198

Query: 1219 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1278
                  LS+ ++     + +I  L PN IV+G++KN+T  G FI L  K+DA V +++LS
Sbjct: 1199 ----RVLSSSLEVKDPEISEISQLKPNDIVRGFIKNITEAGLFINLGGKVDALVKVADLS 1254

Query: 1279 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV 1338
            D +++  + E+ + +LV G+V+ ++     V+++LK S +         + ++L  G IV
Sbjct: 1255 DSFIKDWQSEYEVDQLVKGKVIGIDKSRGNVQMSLKAS-ALDKDYVLPMSFADLRPGQIV 1313

Query: 1339 IGQIKRVESYGLFITIENTN-LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1397
             G+I++VE +G FI I+ TN L GLCH +++++  VD+++++Y+AG++VK KI+ +D EK
Sbjct: 1314 TGKIRKVEEFGAFIVIDGTNNLSGLCHRTQMADKRVDDVKSLYQAGDQVKAKIVFLDAEK 1373

Query: 1398 RRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESED- 1456
            R+ISLG+K+SYF+++A +   S  E+ D  +E +     SS  E+      D+D+ES D 
Sbjct: 1374 RQISLGLKASYFEDNAGSGDNSDGEDLD-GVEGIEIGGDSSGDEDGQDGGIDLDVESIDS 1432

Query: 1457 ----GGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHA-- 1510
                GG       ES   +P       D Q D D       G    A  +DE++N  +  
Sbjct: 1433 NEGQGGG------ESDLEMP-------DAQDDTDAPALSAGGFDWSANVLDEQSNAGSDN 1479

Query: 1511 ----KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1566
                +K +K+ R+ EI       L+ + P++  +FERL+   P+SS +WI+YMAF + ++
Sbjct: 1480 EGADEKPKKKRRKAEITVDRTGDLDVNGPQSVSDFERLLLGQPDSSTLWIQYMAFQMQLS 1539

Query: 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626
            ++ KAR +AERA++TINIREE EK+N+W+A  NLEN YG+  +E V +VF+RA QY D +
Sbjct: 1540 ELSKAREVAERAIKTINIREETEKMNVWIALLNLENAYGS--DETVEEVFKRACQYNDAQ 1597

Query: 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQR 1684
            +++  L  +Y ++ ++  AD+L   ++KKF  S  VW      L       +  +A++ R
Sbjct: 1598 EIYERLTSIYIQSGKHSKADDLFQVLVKKFSQSPNVWANYAHFLHSTLSSPDRARALLSR 1657

Query: 1685 ALLSLPRHKHIKFISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1742
            A  SLP H H+    + A LEF  K G  +RGR+MFE +L+ +PKR D+W+  LD EI+ 
Sbjct: 1658 AKQSLPSHTHVAITLKFAALEFHSKVGSPERGRTMFEALLTTFPKRLDIWNQLLDLEIQQ 1717

Query: 1743 GDVDLIRGLFERAISL--SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
             D D+IRG+FER +    +L PK+    F+++ E+E+  G+++  E V  K  E+V
Sbjct: 1718 NDKDIIRGVFERMVKTNKALKPKQAVAWFRRWSEWEEGNGDKKSKEKVLAKTQEWV 1773



 Score =  188 bits (477), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 294/1259 (23%), Positives = 538/1259 (42%), Gaps = 141/1259 (11%)

Query: 5    GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA-------NEDNL------LPT 51
            G V+++N+ D+ + LP  L G        D I +  IEA       +ED        L  
Sbjct: 154  GQVSQINDLDVALSLPNNLTGYVPITSISDKITE-RIEAIAAQEGEDEDETDLKDVNLKK 212

Query: 52   IFHVGQLVSCIVLQLDDDKK--EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
            +F +GQ +   V+   DD+      KR I LSLR       ++++ V     L A V S+
Sbjct: 213  LFSIGQYLRAYVVSTKDDEAAGSKAKRHIELSLRPQQSNANIAVQNVVTNNTLMASVASV 272

Query: 110  EDHGYILHFGLPSF--TGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDP 166
            EDHG I+  GLP     GF+  N +     +  ++ G +    +  ++ + K V LS DP
Sbjct: 273  EDHGLIMDLGLPELGVKGFMSSNEVGYGVALSSIEEGAVFLCTILGLNSSGKTVKLSVDP 332

Query: 167  DTVSKCVTKDLKGIS----IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 222
              ++   +K+ K +S    ID  +PG  V   V  I   G+    +     T D+ H   
Sbjct: 333  QKIAN--SKNPKYLSDAPTIDAFLPGTAVEILVSEITLRGISGKVMGSLDVTADLMHSGA 390

Query: 223  TFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLHN-----------RAPPS 269
                 + +  Y    KV  R++   P S+   +G++L  ++L             + P  
Sbjct: 391  GASGKDLEKKYKIGSKVKGRLICTFPNSQPAKLGVSLLDHVLSLSSLQGLLNSELKNPLD 450

Query: 270  HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEG 326
             + +    ++ KV +V+ G+GL +D+    V+   +V IS V + ++  L +    +K G
Sbjct: 451  ILPLSSFVEEVKVKKVEPGMGLFVDVGVKGVA--GFVHISRVKDGKIETLAETSGPFKTG 508

Query: 327  SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---I 381
            S  R R++G+  L+GL    L+ S          D+  G VVKGKV  I V+  G    +
Sbjct: 509  SVHRGRLIGYNALDGLYIVSLEPSILAQPFLRVEDLSIGEVVKGKVEKIVVNERGVGGLL 568

Query: 382  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSK 439
            V    G+  L P  HM++  +++P KKFK G+ ++ RVL      ++I +T KKTLV S 
Sbjct: 569  VNLADGISGLVPEAHMADVHLLRPEKKFKEGSTVMARVLSTDPGKRQIRLTLKKTLVNSD 628

Query: 440  LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 499
             A+  SY +    + + G I  I   G  V+FY  ++GF P +E+      +PS  + VG
Sbjct: 629  AALFVSYDDIKVGMQSPGTIVNILSTGAVVQFYGTIRGFLPVAEMSEAYIQDPSQHFLVG 688

Query: 500  QVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 553
            QVV   ++   P ++++ +S      F +      +   +KLG +VS VV   + + + +
Sbjct: 689  QVVNVHVVKVDPEAKKLIVSCKDPAAFGLAQQAAFKK--LKLGEVVSAVVTEKSNDNISL 746

Query: 554  YVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKY 609
             +      + T+P   L D    ++A+ +K  I+ G     L+VL    +   ++L+ K 
Sbjct: 747  DLHG---IRATLPIGQLTDGSSQKNASALKK-IRVGQTLTDLVVLGKYENKRLIILTNKP 802

Query: 610  SLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ--- 664
            +L+  A+   L      +  + VVHG+V NI  T  FV+F G LTG  P+ K  +     
Sbjct: 803  NLVKDAKAKLLLRSFEDVKEDKVVHGFVKNITLTAVFVQFAGGLTGLLPKVKLPEAAIRL 862

Query: 665  -----------RADLSKTYYVGQSVRSNILD------VNSETGRITLSLKQSCCSSTDAS 707
                       +  +++  +  +  + +++D      V  ET   + S+ Q   +  D +
Sbjct: 863  PDFGMKKFQTLQVKITRVDHGQRQFQLSMVDAASKERVEPETPVSSGSINQEAVNPIDTT 922

Query: 708  F-----MQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 762
                  + +  L + KI+ ++ ++ N           +   I+G++  S  F        
Sbjct: 923  LTCLDDLTQGRLTKAKISSVKETQIN---------VQLADNIQGRIDVSQIF-------- 965

Query: 763  HSDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQ 820
              D +  I   +    +     ++   +L +  AK  R + +S ++     F  +     
Sbjct: 966  --DSFDDIKDRKRPVRSFSPKQILNVRVLGIHDAKNHRFLPISHRSGKTMVFELSAKPSD 1023

Query: 821  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQ 878
                 ++  A   + V  +  A V  +KE Y+ ++L P     I    +S D +  K  +
Sbjct: 1024 QNDDPKEPLALDKVKVGSSWVAYVNNIKEEYVWVNLSPNVRGRIPALELSEDVSKLKNLE 1083

Query: 879  KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEIT 938
              F  G ++   V  +     AG   L L A+S    S S       S   G +V  ++T
Sbjct: 1084 THFPIGSAIKVHVKHV----DAGNNRLDLSALS----SQSSGPITLKSLSKGMVVTGKVT 1135

Query: 939  EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK 998
            +     + ++        +++T++ DD S      +S  +I +     +    + P+ K 
Sbjct: 1136 KSTERHIMVQLSDNLSAPVNLTDLADDYSEADPTKYSKGEIVRVCVVDV----DLPNKK- 1190

Query: 999  SFLWELSIKPSMLTVS--EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQ 1056
                 LS +PS +  S  E+    + E   +     V G++  +      + +   + A 
Sbjct: 1191 ---IRLSTRPSRVLSSSLEVKDPEISEISQLKPNDIVRGFIKNITEAGLFINLGGKVDAL 1247

Query: 1057 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1116
            + + D     S ++++Q  + + + V G V+ I+K +  +++ L+       D  + +S 
Sbjct: 1248 VKVAD--LSDSFIKDWQSEYEVDQLVKGKVIGIDKSRGNVQMSLKASALD-KDYVLPMSF 1304

Query: 1117 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1175
             +++     G IV G+I K+      +V+    +L G  H T++ +  V D  S Y  G
Sbjct: 1305 ADLRP----GQIVTGKIRKVEEFGAFIVIDGTNNLSGLCHRTQMADKRVDDVKSLYQAG 1359



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 105/489 (21%), Positives = 201/489 (41%), Gaps = 69/489 (14%)

Query: 361  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVGAEL 415
            D+  G + K K+ +V      VQ    ++    +  +   F+ +K    P + F     L
Sbjct: 928  DLTQGRLTKAKISSVKETQINVQLADNIQGRIDVSQIFDSFDDIKDRKRPVRSFSPKQIL 987

Query: 416  VFRVLGVKSKR----ITVTHK--KTLVKSKLAILSSYAE------ATDRL-ITHGWIT-- 460
              RVLG+   +    + ++H+  KT+V    A  S   +      A D++ +   W+   
Sbjct: 988  NVRVLGIHDAKNHRFLPISHRSGKTMVFELSAKPSDQNDDPKEPLALDKVKVGSSWVAYV 1047

Query: 461  -KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH--VGQVVKCRIMSSIPASRRIN 517
              I++   +V     V+G  P  EL  D     +   H  +G  +K  +      + R++
Sbjct: 1048 NNIKEEYVWVNLSPNVRGRIPALELSEDVSKLKNLETHFPIGSAIKVHVKHVDAGNNRLD 1107

Query: 518  LSFMMKPTR--VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
            LS +   +   ++   L K G +V+G V   T   ++V  ++   S   +    LAD   
Sbjct: 1108 LSALSSQSSGPITLKSLSK-GMVVTGKVTKSTERHIMVQ-LSDNLS-APVNLTDLADDYS 1164

Query: 576  HATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQ---QLP--SDASHIHPN 628
             A   K       E  ++ V+D +  N  + LS + S + S+    + P  S+ S + PN
Sbjct: 1165 EADPTKY---SKGEIVRVCVVDVDLPNKKIRLSTRPSRVLSSSLEVKDPEISEISQLKPN 1221

Query: 629  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
             +V G++ NI E G F+   G++      +   D    D    Y V Q V+  ++ ++  
Sbjct: 1222 DIVRGFIKNITEAGLFINLGGKVDALVKVADLSDSFIKDWQSEYEVDQLVKGKVIGIDKS 1281

Query: 689  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             G + +SLK        AS + + ++L    A L+                 G ++ GK+
Sbjct: 1282 RGNVQMSLK--------ASALDKDYVLPMSFADLRP----------------GQIVTGKI 1317

Query: 749  HESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVD 801
             +  +FG  +  +  +++ G     Q+A   V       ++G  ++A I+ +   +R + 
Sbjct: 1318 RKVEEFGAFIVIDGTNNLSGLCHRTQMADKRVDDVKSLYQAGDQVKAKIVFLDAEKRQIS 1377

Query: 802  LSLKTVFID 810
            L LK  + +
Sbjct: 1378 LGLKASYFE 1386



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 156/353 (44%), Gaps = 42/353 (11%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE------NSGIDVKPGL 144
            L+L+ V+ G    AYV +I++  Y+     P+  G +P   L+E      N       G 
Sbjct: 1032 LALDKVKVGSSWVAYVNNIKEE-YVWVNLSPNVRGRIPALELSEDVSKLKNLETHFPIGS 1090

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
             ++  V+ +D     + LS+     S  +T  LK +S      GM+V+ +V    E  +M
Sbjct: 1091 AIKVHVKHVDAGNNRLDLSALSSQSSGPIT--LKSLS-----KGMVVTGKVTKSTERHIM 1143

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 264
            +      +  V++  L + +   +    Y++ + V   ++ VD  ++ + L+  P    +
Sbjct: 1144 VQLSDNLSAPVNLTDLADDYSEAD-PTKYSKGEIVRVCVVDVDLPNKKIRLSTRP----S 1198

Query: 265  RAPPSHVKVGDI----YDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAE 313
            R   S ++V D       Q K   + RG        GL +++        A V ++D+++
Sbjct: 1199 RVLSSSLEVKDPEISEISQLKPNDIVRGFIKNITEAGLFINLGG---KVDALVKVADLSD 1255

Query: 314  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKG 370
              ++  + +Y+    V+ +++G     G     LKASA +    L  + +D++PG +V G
Sbjct: 1256 SFIKDWQSEYEVDQLVKGKVIGIDKSRGNVQMSLKASALDKDYVLPMSFADLRPGQIVTG 1315

Query: 371  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVG----AELVF 417
            K+  V+ FGA +   G   +  LC    M++  +      ++ G    A++VF
Sbjct: 1316 KIRKVEEFGAFIVIDGTNNLSGLCHRTQMADKRVDDVKSLYQAGDQVKAKIVF 1368



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 158/408 (38%), Gaps = 96/408 (23%)

Query: 952  GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1011
            G  G +HI+ V D K   +      FK G     R+I   N  D     L+ +S++PS+L
Sbjct: 480  GVAGFVHISRVKDGKIETLAETSGPFKTGSVHRGRLIG-YNALDG----LYIVSLEPSIL 534

Query: 1012 TVSEIGSKLLFEECDVSIGQRVTGYVYK-VDNEWALLTISRHLKAQL--FILDSAYEPSE 1068
                  ++      D+SIG+ V G V K V NE  +  +  +L   +   + ++      
Sbjct: 535  ------AQPFLRVEDLSIGEVVKGKVEKIVVNERGVGGLLVNLADGISGLVPEAHMADVH 588

Query: 1069 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1128
            L   +++F  G  V   VLS +  K+ +RL L+        KT  + N +   F+   DI
Sbjct: 589  LLRPEKKFKEGSTVMARVLSTDPGKRQIRLTLK--------KT--LVNSDAALFVSYDDI 638

Query: 1129 -VG----GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY--------DEG 1175
             VG    G I  ILS   G VVQ    + G +   E+    + DP   +           
Sbjct: 639  KVGMQSPGTIVNILS--TGAVVQFYGTIRGFLPVAEMSEAYIQDPSQHFLVGQVVNVHVV 696

Query: 1176 QFDP------LSGYD--------EGQFVKCKVLEISRTV---RGTFHVELSL---RSSL- 1214
            + DP      +S  D        +  F K K+ E+   V   +   ++ L L   R++L 
Sbjct: 697  KVDPEAKKLIVSCKDPAAFGLAQQAAFKKLKLGEVVSAVVTEKSNDNISLDLHGIRATLP 756

Query: 1215 -----DGMSSTNSSDLS--------TDVDTPGKH-----------------------LEK 1238
                 DG S  N+S L         TD+   GK+                       L  
Sbjct: 757  IGQLTDGSSQKNASALKKIRVGQTLTDLVVLGKYENKRLIILTNKPNLVKDAKAKLLLRS 816

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
             ED+  + +V G+VKN+T    F+  +  L   +    L +  +  P+
Sbjct: 817  FEDVKEDKVVHGFVKNITLTAVFVQFAGGLTGLLPKVKLPEAAIRLPD 864



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 167/802 (20%), Positives = 321/802 (40%), Gaps = 129/802 (16%)

Query: 651  LTGFAPRSKAVDGQRADLSKT---YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
            + GF   S+  DG+   L++T   +  G   R  ++  N+  G   +SL        + S
Sbjct: 481  VAGFVHISRVKDGKIETLAETSGPFKTGSVHRGRLIGYNALDGLYIVSL--------EPS 532

Query: 708  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV-----HESNDFGVVVSFEE 762
             + + FL                    VE   IG V++GKV     +E    G++V+  +
Sbjct: 533  ILAQPFLR-------------------VEDLSIGEVVKGKVEKIVVNERGVGGLLVNLAD 573

Query: 763  HSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 815
               + G +    +A   +       + GS + A +L     +R + L+LK   +      
Sbjct: 574  G--ISGLVPEAHMADVHLLRPEKKFKEGSTVMARVLSTDPGKRQIRLTLKKTLV------ 625

Query: 816  NSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 874
            NS+           +  D+ V  Q+   IV I+    +V         +  A +S+   Q
Sbjct: 626  NSDAAL------FVSYDDIKVGMQSPGTIVNILSTGAVVQFYGTIRGFLPVAEMSEAYIQ 679

Query: 875  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK---AISETETSSSKRAKKKSSYDVGS 931
              P + FL GQ V   V+       A +L++  K   A    + ++ K+ K      +G 
Sbjct: 680  D-PSQHFLVGQVVNVHVVK--VDPEAKKLIVSCKDPAAFGLAQQAAFKKLK------LGE 730

Query: 932  LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT------- 984
            +V A +TE     + L    G    + I ++ D  S    +     ++GQT+T       
Sbjct: 731  VVSAVVTEKSNDNISLDLH-GIRATLPIGQLTDGSSQKNASALKKIRVGQTLTDLVVLGK 789

Query: 985  ---ARIIAKSNKPDMKKSFLWELSIKPSMLTVSE------IGSKLLFEECDVSIGQRVTG 1035
                R+I  +NKP++ K    +L ++ S   V E          +      V     +TG
Sbjct: 790  YENKRLIILTNKPNLVKDAKAKLLLR-SFEDVKEDKVVHGFVKNITLTAVFVQFAGGLTG 848

Query: 1036 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1095
             + KV    A + +      +   L    + + +   QR+F +          +  E   
Sbjct: 849  LLPKVKLPEAAIRLPDFGMKKFQTLQ--VKITRVDHGQRQFQLSMVDAASKERVEPET-- 904

Query: 1096 LRLVLRPFQDG-ISDKTVDISNDNMQTFIHEGDIVGGRISKI-LSGV--GGLVVQIGPHL 1151
                  P   G I+ + V+  +  +       D+  GR++K  +S V    + VQ+  ++
Sbjct: 905  ------PVSSGSINQEAVNPIDTTLTCL---DDLTQGRLTKAKISSVKETQINVQLADNI 955

Query: 1152 YGRVHFTELKNICVSDPLSGYDE--GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
             GR+  +++           +D+   +  P+  +   Q +  +VL I       F + +S
Sbjct: 956  QGRIDVSQI--------FDSFDDIKDRKRPVRSFSPKQILNVRVLGIHDAKNHRF-LPIS 1006

Query: 1210 LRS--SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1267
             RS  ++    S   SD + D   P   L+K++  S  +    YV N+  +  ++ LS  
Sbjct: 1007 HRSGKTMVFELSAKPSDQNDDPKEP-LALDKVKVGSSWV---AYVNNIKEEYVWVNLSPN 1062

Query: 1268 LDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
            +  ++    LS+    +++ E  FPIG  +   V  V+  + R++++  +S S     S 
Sbjct: 1063 VRGRIPALELSEDVSKLKNLETHFPIGSAIKVHVKHVDAGNNRLDLSALSSQS-----SG 1117

Query: 1326 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1385
               L +L  G +V G++ +     + + + + NL    ++++L++D+ +   T Y  GE 
Sbjct: 1118 PITLKSLSKGMVVTGKVTKSTERHIMVQLSD-NLSAPVNLTDLADDYSEADPTKYSKGEI 1176

Query: 1386 VKVKILKVDKEKRRISLGMKSS 1407
            V+V ++ VD   ++I L  + S
Sbjct: 1177 VRVCVVDVDLPNKKIRLSTRPS 1198


>gi|291404761|ref|XP_002718640.1| PREDICTED: programmed cell death 11 isoform 1 [Oryctolagus cuniculus]
          Length = 1875

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 387/1400 (27%), Positives = 649/1400 (46%), Gaps = 164/1400 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D   +  NE    E+ L     LP +F
Sbjct: 86   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTEKLNEQMTQEEPLKDLLRLPELF 145

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L   +K  GKR + LSL    + K LS E ++ GM+LT  V S+EDHG
Sbjct: 146  APGMLVRCVVRSLAITEK--GKRSVKLSLNPKNVNKVLSAEALKPGMLLTGTVSSLEDHG 203

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G ++K G  L  ++  +     VV LS     
Sbjct: 204  YLVDIGVGGTRAFLPLQKAQEYIRQKNKGANLKVGQYLHCIIEEVKGDGGVVSLSVGHAE 263

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL +FTG VD  HL      T 
Sbjct: 264  VSAAIASEEQSWTLNNLLPGLVVKAQVQKVTRFGLTLNFLKFFTGLVDFMHLDPKKVGTY 323

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRV 285
            + N     + V A IL V P ++ V L+L P  L    P + +    +G + D   V   
Sbjct: 324  FSN-----QAVRACILCVHPRTKVVRLSLRPIFLQPGRPLTRLSCQHLGAVLDDVPVQGF 378

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    + +  +   AY  +S +++ +     + +K G+  + RI+ +  L+ L   
Sbjct: 379  FIKAGATFSLKNGVL---AYARLSHLSDSKKVFKPEAFKPGNTHKCRIIDYSPLDELVLL 435

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E   F + D+KPG V+KG V+ +  +G +++    ++ L P  H+++  +  P
Sbjct: 436  SLRTSIIEAQYFRYHDIKPGAVIKGTVLTIKPYGILLKVGERIRGLVPPSHLADILMKNP 495

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G EL  RVL    ++K++ +T KKTLV+SKL  ++ YA+A   L THG I +++
Sbjct: 496  EKKYHIGEELKCRVLLCDPEAKKLIMTLKKTLVESKLPPITCYADAQPGLQTHGVIIRVK 555

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL      +P S+++ GQVVK  +++S P+  R+ LSF + 
Sbjct: 556  DYGCIVKFYNDVQGLVPKHELSAQYIPDPGSVFYTGQVVKVVVLNSEPSKERMLLSFKLL 615

Query: 523  -----KPTRVSEDDLVKLGSLVSGVVDV----VTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                 K     +      G  V  +VDV     T + + V V+        +PT HL+DH
Sbjct: 616  SDGEPKKEHAGQGQKKGRGVTVGQLVDVKVLEKTKDGLEVAVLPHNIP-AFLPTSHLSDH 674

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     +L L  K +L+++ +  Q P + S IHP  ++
Sbjct: 675  VANGPLLYHWLQAGDILHRVLCLSQSEKHLFLCRKPALVSTVEGDQDPKNFSEIHPGMLL 734

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 735  IGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSPSDHFVEGQTVVAKVTNVDEEKQR 794

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D +      LL + +  LQ      S  +   ++ +     G V++ 
Sbjct: 795  MLLSLRLSDCMLGDVA-STSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAKMTPGMVLDL 853

Query: 747  KVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
             V E  + G V+       V G +   + +  AG  VESG   +  IL+V   +  V +S
Sbjct: 854  MVQEVLEDGCVLF--SGGPVPGLVLKASKYHRAGQEVESGQKKKVVILNVDMLKLEVHVS 911

Query: 804  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 863
            L    +D        R+A+K K+  E       HQ   AIV+ ++E++ V SL E  H  
Sbjct: 912  LLQNLVD--------RKAKKLKKGSE-------HQ---AIVQHLEESFAVASLVETGHLA 953

Query: 864  GYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 922
             ++  S  N T +F  ++   GQ V  T+       T G LL +   +++     +++  
Sbjct: 954  AFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT-GFLLAVEGPVAKRTMRQTRKDS 1012

Query: 923  ------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
                              KK +  +G  V   +  +KP  + +    G  G IH +++ D
Sbjct: 1013 EAVDEDEEVDPALAVGPIKKHALSIGDKVTGTVKSVKPTHVVVTLEDGITGCIHASQILD 1072

Query: 965  DKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPSML---- 1011
            D   V  +  +  K+G+TVTAR+I     K+ K  P     F+    ELS++PS L    
Sbjct: 1073 D-VPVGTSPTAKLKVGKTVTARVIGGRDVKTFKFLPISHPRFIRTIPELSVRPSELEKDG 1131

Query: 1012 -------TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDS 1062
                   +VS +     ++      GQ VT ++  Y V  +W  + I+  ++ ++ +L +
Sbjct: 1132 HTALNTYSVSPVEKIRQYQ-----AGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLT 1186

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            +     L+   ++F +G+A+   V+     K  L L L             I    ++  
Sbjct: 1187 SLSFKVLKCPDKKFRVGQALKATVVGPVSSKAFLCLSL-------------IGPHKLE-- 1231

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
              +G++  GR+ ++     GL V       GRV         VSD    Y E    PL  
Sbjct: 1232 --KGEVAMGRVVEVTPN-KGLTVSFPFGKKGRVSI-----FHVSD---SYSE---TPLQD 1277

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            +   + V+C VL     +     + LSLR      SS  + +  + V+ P   ++ I+D+
Sbjct: 1278 FVPQKIVRCYVLSTEEQM-----LTLSLR------SSRTNPETKSKVEDP--EIDSIQDV 1324

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE----KEFPIGKLVAGR 1298
                +++GYV++V   G    L   +       ++S  Y  S +    K  P GKL+  +
Sbjct: 1325 KEGQLLRGYVRSVQPNGVLFSLGPSVTGLADYPHVSQ-YSPSEKDLYNKYLPEGKLLTAK 1383

Query: 1299 VLSVEPLSKRVEVTLKTSDS 1318
            VL +      VE++    D+
Sbjct: 1384 VLRLNHRQDLVELSFLPCDT 1403



 Score =  287 bits (734), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 149/305 (48%), Positives = 209/305 (68%), Gaps = 11/305 (3%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDA--------PRTPDEFERLVRSSPNSSFV 1554
            DEK +   KKK K+ERE E + AE+ L   +A        P + DEF+RLV SS NSS +
Sbjct: 1566 DEKPHPATKKKSKKERELEKQKAEKELSRIEAALMDPGRQPESADEFDRLVLSSANSSIL 1625

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1626 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLGK 1683

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1674
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1684 VFERAVQYNEPLKVFLHLADIYTKSEKFQEAAELYNRMLKRFRQEKAVWIKYGAFLLRRS 1743

Query: 1675 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
            Q G    V+QRAL  LP  +H+  I + A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1744 QAGASHRVLQRALECLPAKEHMDVIVKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1803

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1804 VYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1863

Query: 1794 EYVES 1798
            EYVE+
Sbjct: 1864 EYVEA 1868



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            +  D+ P  +++G V  +   G  + +  ++   V  S+L+D  +++PEK++ IG+ +  
Sbjct: 448  RYHDIKPGAVIKGTVLTIKPYGILLKVGERIRGLVPPSHLADILMKNPEKKYHIGEELKC 507

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            RVL  +P +K++ +TLK    +T  +S+   I   ++   G    G I RV+ YG  +  
Sbjct: 508  RVLLCDPEAKKLIMTLK----KTLVESKLPPITCYADAQPGLQTHGVIIRVKDYGCIVKF 563

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             N ++ GL    ELS  ++ +  +++  G+ VKV +L  +  K R+ L  K
Sbjct: 564  YN-DVQGLVPKHELSAQYIPDPGSVFYTGQVVKVVVLNSEPSKERMLLSFK 613



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             N S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 723  KNFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSPSDHFVEGQTV 781

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 782  VAKVTNVDEEKQRMLLSLRLS 802



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 101/207 (48%), Gaps = 18/207 (8%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +L++++ G  S+ +  L   +  P K LEK E      +  G V  VT +KG  +
Sbjct: 1200 FRVGQALKATVVGPVSSKAF-LCLSLIGPHK-LEKGE------VAMGRVVEVTPNKGLTV 1251

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                    +V + ++SD Y E+P ++F   K+V   VLS E   + + ++L++S +   +
Sbjct: 1252 SFPFGKKGRVSIFHVSDSYSETPLQDFVPQKIVRCYVLSTE--EQMLTLSLRSSRTNPET 1309

Query: 1323 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITI--ENTNLVGLCHVSELSEDHVDN 1375
            +S     EI+++ ++  G ++ G ++ V+  G+  ++    T L    HVS+ S    D 
Sbjct: 1310 KSKVEDPEIDSIQDVKEGQLLRGYVRSVQPNGVLFSLGPSVTGLADYPHVSQYSPSEKDL 1369

Query: 1376 IETIYRAGEKVKVKILKVDKEKRRISL 1402
                   G+ +  K+L+++  +  + L
Sbjct: 1370 YNKYLPEGKLLTAKVLRLNHRQDLVEL 1396


>gi|291404763|ref|XP_002718641.1| PREDICTED: programmed cell death 11 isoform 2 [Oryctolagus cuniculus]
          Length = 1860

 Score =  405 bits (1041), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 387/1400 (27%), Positives = 649/1400 (46%), Gaps = 164/1400 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D   +  NE    E+ L     LP +F
Sbjct: 86   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTEKLNEQMTQEEPLKDLLRLPELF 145

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L   +K  GKR + LSL    + K LS E ++ GM+LT  V S+EDHG
Sbjct: 146  APGMLVRCVVRSLAITEK--GKRSVKLSLNPKNVNKVLSAEALKPGMLLTGTVSSLEDHG 203

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G ++K G  L  ++  +     VV LS     
Sbjct: 204  YLVDIGVGGTRAFLPLQKAQEYIRQKNKGANLKVGQYLHCIIEEVKGDGGVVSLSVGHAE 263

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL +FTG VD  HL      T 
Sbjct: 264  VSAAIASEEQSWTLNNLLPGLVVKAQVQKVTRFGLTLNFLKFFTGLVDFMHLDPKKVGTY 323

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRV 285
            + N     + V A IL V P ++ V L+L P  L    P + +    +G + D   V   
Sbjct: 324  FSN-----QAVRACILCVHPRTKVVRLSLRPIFLQPGRPLTRLSCQHLGAVLDDVPVQGF 378

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    + +  +   AY  +S +++ +     + +K G+  + RI+ +  L+ L   
Sbjct: 379  FIKAGATFSLKNGVL---AYARLSHLSDSKKVFKPEAFKPGNTHKCRIIDYSPLDELVLL 435

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E   F + D+KPG V+KG V+ +  +G +++    ++ L P  H+++  +  P
Sbjct: 436  SLRTSIIEAQYFRYHDIKPGAVIKGTVLTIKPYGILLKVGERIRGLVPPSHLADILMKNP 495

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G EL  RVL    ++K++ +T KKTLV+SKL  ++ YA+A   L THG I +++
Sbjct: 496  EKKYHIGEELKCRVLLCDPEAKKLIMTLKKTLVESKLPPITCYADAQPGLQTHGVIIRVK 555

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL      +P S+++ GQVVK  +++S P+  R+ LSF + 
Sbjct: 556  DYGCIVKFYNDVQGLVPKHELSAQYIPDPGSVFYTGQVVKVVVLNSEPSKERMLLSFKLL 615

Query: 523  -----KPTRVSEDDLVKLGSLVSGVVDV----VTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                 K     +      G  V  +VDV     T + + V V+        +PT HL+DH
Sbjct: 616  SDGEPKKEHAGQGQKKGRGVTVGQLVDVKVLEKTKDGLEVAVLPHNIP-AFLPTSHLSDH 674

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     +L L  K +L+++ +  Q P + S IHP  ++
Sbjct: 675  VANGPLLYHWLQAGDILHRVLCLSQSEKHLFLCRKPALVSTVEGDQDPKNFSEIHPGMLL 734

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 735  IGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSPSDHFVEGQTVVAKVTNVDEEKQR 794

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D +      LL + +  LQ      S  +   ++ +     G V++ 
Sbjct: 795  MLLSLRLSDCMLGDVA-STSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAKMTPGMVLDL 853

Query: 747  KVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
             V E  + G V+       V G +   + +  AG  VESG   +  IL+V   +  V +S
Sbjct: 854  MVQEVLEDGCVLF--SGGPVPGLVLKASKYHRAGQEVESGQKKKVVILNVDMLKLEVHVS 911

Query: 804  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 863
            L    +D        R+A+K K+  E       HQ   AIV+ ++E++ V SL E  H  
Sbjct: 912  LLQNLVD--------RKAKKLKKGSE-------HQ---AIVQHLEESFAVASLVETGHLA 953

Query: 864  GYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 922
             ++  S  N T +F  ++   GQ V  T+       T G LL +   +++     +++  
Sbjct: 954  AFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT-GFLLAVEGPVAKRTMRQTRKDS 1012

Query: 923  ------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
                              KK +  +G  V   +  +KP  + +    G  G IH +++ D
Sbjct: 1013 EAVDEDEEVDPALAVGPIKKHALSIGDKVTGTVKSVKPTHVVVTLEDGITGCIHASQILD 1072

Query: 965  DKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPSML---- 1011
            D   V  +  +  K+G+TVTAR+I     K+ K  P     F+    ELS++PS L    
Sbjct: 1073 D-VPVGTSPTAKLKVGKTVTARVIGGRDVKTFKFLPISHPRFIRTIPELSVRPSELEKDG 1131

Query: 1012 -------TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDS 1062
                   +VS +     ++      GQ VT ++  Y V  +W  + I+  ++ ++ +L +
Sbjct: 1132 HTALNTYSVSPVEKIRQYQ-----AGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLT 1186

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            +     L+   ++F +G+A+   V+     K  L L L             I    ++  
Sbjct: 1187 SLSFKVLKCPDKKFRVGQALKATVVGPVSSKAFLCLSL-------------IGPHKLE-- 1231

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
              +G++  GR+ ++     GL V       GRV         VSD    Y E    PL  
Sbjct: 1232 --KGEVAMGRVVEVTPN-KGLTVSFPFGKKGRVSI-----FHVSD---SYSE---TPLQD 1277

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            +   + V+C VL     +     + LSLR      SS  + +  + V+ P   ++ I+D+
Sbjct: 1278 FVPQKIVRCYVLSTEEQM-----LTLSLR------SSRTNPETKSKVEDP--EIDSIQDV 1324

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE----KEFPIGKLVAGR 1298
                +++GYV++V   G    L   +       ++S  Y  S +    K  P GKL+  +
Sbjct: 1325 KEGQLLRGYVRSVQPNGVLFSLGPSVTGLADYPHVSQ-YSPSEKDLYNKYLPEGKLLTAK 1383

Query: 1299 VLSVEPLSKRVEVTLKTSDS 1318
            VL +      VE++    D+
Sbjct: 1384 VLRLNHRQDLVELSFLPCDT 1403



 Score =  287 bits (735), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 149/305 (48%), Positives = 209/305 (68%), Gaps = 11/305 (3%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDA--------PRTPDEFERLVRSSPNSSFV 1554
            DEK +   KKK K+ERE E + AE+ L   +A        P + DEF+RLV SS NSS +
Sbjct: 1551 DEKPHPATKKKSKKERELEKQKAEKELSRIEAALMDPGRQPESADEFDRLVLSSANSSIL 1610

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1611 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLGK 1668

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1674
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1669 VFERAVQYNEPLKVFLHLADIYTKSEKFQEAAELYNRMLKRFRQEKAVWIKYGAFLLRRS 1728

Query: 1675 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
            Q G    V+QRAL  LP  +H+  I + A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1729 QAGASHRVLQRALECLPAKEHMDVIVKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1788

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1789 VYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1848

Query: 1794 EYVES 1798
            EYVE+
Sbjct: 1849 EYVEA 1853



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            +  D+ P  +++G V  +   G  + +  ++   V  S+L+D  +++PEK++ IG+ +  
Sbjct: 448  RYHDIKPGAVIKGTVLTIKPYGILLKVGERIRGLVPPSHLADILMKNPEKKYHIGEELKC 507

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            RVL  +P +K++ +TLK    +T  +S+   I   ++   G    G I RV+ YG  +  
Sbjct: 508  RVLLCDPEAKKLIMTLK----KTLVESKLPPITCYADAQPGLQTHGVIIRVKDYGCIVKF 563

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             N ++ GL    ELS  ++ +  +++  G+ VKV +L  +  K R+ L  K
Sbjct: 564  YN-DVQGLVPKHELSAQYIPDPGSVFYTGQVVKVVVLNSEPSKERMLLSFK 613



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             N S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 723  KNFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSPSDHFVEGQTV 781

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 782  VAKVTNVDEEKQRMLLSLRLS 802



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 101/207 (48%), Gaps = 18/207 (8%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +L++++ G  S+ +  L   +  P K LEK E      +  G V  VT +KG  +
Sbjct: 1200 FRVGQALKATVVGPVSSKAF-LCLSLIGPHK-LEKGE------VAMGRVVEVTPNKGLTV 1251

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                    +V + ++SD Y E+P ++F   K+V   VLS E   + + ++L++S +   +
Sbjct: 1252 SFPFGKKGRVSIFHVSDSYSETPLQDFVPQKIVRCYVLSTE--EQMLTLSLRSSRTNPET 1309

Query: 1323 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITI--ENTNLVGLCHVSELSEDHVDN 1375
            +S     EI+++ ++  G ++ G ++ V+  G+  ++    T L    HVS+ S    D 
Sbjct: 1310 KSKVEDPEIDSIQDVKEGQLLRGYVRSVQPNGVLFSLGPSVTGLADYPHVSQYSPSEKDL 1369

Query: 1376 IETIYRAGEKVKVKILKVDKEKRRISL 1402
                   G+ +  K+L+++  +  + L
Sbjct: 1370 YNKYLPEGKLLTAKVLRLNHRQDLVEL 1396


>gi|403217806|emb|CCK72299.1| hypothetical protein KNAG_0J02180 [Kazachstania naganishii CBS 8797]
          Length = 1704

 Score =  404 bits (1039), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 346/1211 (28%), Positives = 573/1211 (47%), Gaps = 171/1211 (14%)

Query: 640  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            +TGC V F G + GF P ++  +       +   +GQ+V   +L V++E  RI      +
Sbjct: 606  KTGCIVSFFGGVRGFLPNAEISEVFVKKPEQHLRLGQTVVVRLLKVDAEDSRIL-----A 660

Query: 700  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 759
             C  ++A   ++    +E I  L   +               S+I   V E     +++ 
Sbjct: 661  TCKVSNAQAQEQ----KETIEQLVPGR---------------SMINVTVVEKTKDALIIE 701

Query: 760  FEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFI 809
             ++  ++ G +    L+ + +E           G+ ++  ++D     ++ +++LK   I
Sbjct: 702  MDK-VELRGVLQVGHLSDSRIEQNRADFKKIAIGTHLRGLVIDKETRTQVFNMTLKKSLI 760

Query: 810  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKENYLVLSLPEYNHSIG 864
            +    A            +  SKD  +   V +I +          ++ L LP Y     
Sbjct: 761  E---AAEKEELPTSYSDIKAVSKDTPLCGYVKSISDKGLFIAFNGKFVGLVLPSYAVESR 817

Query: 865  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA-----------ISET 913
               +S         K F   QSV A +  L S     R LL LKA             E 
Sbjct: 818  DVDIS---------KTFFINQSVSAYL--LRSDDENERFLLTLKAPKIESKKKEPASDEV 866

Query: 914  ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 973
                    KK S Y +G +V+  I  +K  +L +      HGRI ++EV D+ S+++   
Sbjct: 867  TNPIDNSIKKLSDYTIGKIVKGTIKAVKKNQLNIILADDLHGRIDVSEVYDNYSDILNTK 926

Query: 974  --FSNFKIGQTVTARIIA----KSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLF 1022
               S FK G  + A+I+     KS+K       +KK  + ELSIKPS+L+ SE    L  
Sbjct: 927  APLSQFKNGSIIEAKIVGNHDIKSHKFLPITHQIKKGTVLELSIKPSVLS-SEDNRPLSL 985

Query: 1023 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGKA 1081
            +  D+SIG  + G+V      +  LTIS  LKA+L + D   +  EL +  +  F +G A
Sbjct: 986  K--DISIGDELVGFVNNYSLNFLWLTISPILKAKLSMFDLTEDGLELSKNIEDNFPLGSA 1043

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
            +   V +I+   +   +       G S    D  +      I   D++  RI KI     
Sbjct: 1044 IPVKVTAIDSTHEFATVT------GRSHVVKDFDS------IAVNDVIPARIGKIFENF- 1090

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
             L++ +G  + G V  T        D L  +     +   G    + V  KV+ I +  +
Sbjct: 1091 -LLLDLGNSITGLVFAT--------DALDSF-STSLNEAYGDKVNRIVSAKVVAIDKKNK 1140

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
                + LSLRS    + +  S                  DL    IV G VK V  KG F
Sbjct: 1141 ---KINLSLRSEASKVPTVTS----------------YSDLKQGDIVHGLVKTVNDKGIF 1181

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            + LSR ++A V +S LSD Y++  +K +   + V G+V+  E   K + +TL+ S+    
Sbjct: 1182 VYLSRTVEAFVPISKLSDAYLKDWKKFYKPMQHVIGKVVKSED-DKHILITLRESEV-NG 1239

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1380
                + N  ++ VG++  G +K +  +G+FI ++NT N+ GL H+SE+++   ++I +++
Sbjct: 1240 DLKVLKNYDDIKVGEVFKGSVKNITDFGVFIKLDNTANVTGLAHISEIADSTPNDISSLF 1299

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1440
              G+KVK  +LK +  K+++SL +K+S+F           E + ++  +++ + N     
Sbjct: 1300 GPGDKVKAIVLKTNSAKKQLSLSLKASHF--------TKEETDEEKDEDQIATVNFDD-- 1349

Query: 1441 ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1500
             +S V V D D+E+E                 P ++ L     D   G+S + G      
Sbjct: 1350 ADSEVDV-DSDIENE-----------------PEKMKLTSMSTD---GLSLSSGFDWTTS 1388

Query: 1501 TIDEKN-----------NRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSP 1549
             +D+             N    KK K +R   I   +   +   AP +  +FERL+  +P
Sbjct: 1389 ILDQARESESESEDEEDNFMESKKHKHKRRDRIVQDKTIDINTRAPESVGDFERLIMGNP 1448

Query: 1550 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1609
            NSS VW+ Y+AF L +++VEKAR IAERAL+TIN REE EKLNIW+A  NLEN +G P  
Sbjct: 1449 NSSVVWMNYIAFQLQLSEVEKAREIAERALKTINFREETEKLNIWIAMLNLENTFGTP-- 1506

Query: 1610 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQ 1668
            + +  +F+RA QY D   +H  LL +Y+ +++ + A  L     KKF      +W+   +
Sbjct: 1507 DTLDDIFKRACQYMDSYTMHNKLLSIYQMSDKTEAAATLFKATAKKFGSEKVSIWIAWSE 1566

Query: 1669 RLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1727
             LL   +++G + ++  AL +LP+  H++ + + A LEF  G ++RGRS+FEG+L++ PK
Sbjct: 1567 FLLANGEEDGARNILSNALKALPKRHHVEVVRRFAQLEFSKGDSERGRSLFEGLLADAPK 1626

Query: 1728 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1787
            R D+W++Y+DQE + GD   +  L+ER  S  +  K+ KF F K+L++E++ G+E+ I+Y
Sbjct: 1627 RIDIWNVYIDQESKAGDKQKVDALYERVFSRKITKKQAKFFFNKWLQFEETAGDEKMIDY 1686

Query: 1788 VKQKAMEYVES 1798
            VK KA EYV+S
Sbjct: 1687 VKAKASEYVDS 1697



 Score =  165 bits (417), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 273/1187 (22%), Positives = 516/1187 (43%), Gaps = 162/1187 (13%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRGLARAA----------DALDPILDNEIE---------- 42
            L G V+E+N+ D+ +    G+ G               + LD  +D++ E          
Sbjct: 121  LIGQVSEINKNDICVTFSDGISGFVNLTHISEQFTHILEELDENMDSDEEKESEYESDNE 180

Query: 43   -ANEDNLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLET 95
             A E   LP +   F +GQ + C VL    L    K   KR+I L++  S +    + E 
Sbjct: 181  KAAEAKELPDLKNYFKLGQWLRCNVLTNNALTTKSKNNKKRRIELTIEPSYV-NTFTEED 239

Query: 96   VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 155
            + +   +   VKS+EDHG  L  G+   TGF+ + ++  + G+   PG +  G V    +
Sbjct: 240  LVKSAPVQCSVKSVEDHGATLDVGVVGITGFISKKDIGSSLGL--LPGAVFLGNVYK--Q 295

Query: 156  TRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 214
            T +VV ++ D  +    +T+    IS +D LVPGM +    ++I  +G++        G 
Sbjct: 296  TERVVNINLDFSSKKNKITQ----ISNVDALVPGMSLDLLCKAITPSGIVGKCFGLVNGF 351

Query: 215  VDIFHLQNTFPTTNWKNDYNQHKKVNARIL--FVDPTSRAVGL-TLNPYLLHNRAPPSHV 271
            +   HL   F   + K+ +     +  R+L   ++  S  V L +L P +   R  P+ +
Sbjct: 352  ISSAHL-GVFKEDDMKHKFAIGSNIQCRVLATLINNESEKVALLSLIPNI--ERLEPT-L 407

Query: 272  KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK----KYKEGS 327
            K  + ++   +       G   +          Y+ ++ V ++ V ++ K    +     
Sbjct: 408  KCTEAFEAFPI-------GYNFETTKVKGRDSEYLYLA-VDDDRVGRVHKSRIGELDSTD 459

Query: 328  CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI-AVDSFGAIVQFPG 386
             ++ +++G+  ++ +                  D+K G ++   ++ AV   G  ++   
Sbjct: 460  NLKAKVMGYDIVDNMYELATDPKILALKYVRSKDIKIGELLTTCIVNAVSEKGIELKIFN 519

Query: 387  G--VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV---KSKL 440
            G  V  + PL H+S+  +V P +KFK+G ++  R+L V ++ RI  T KK+LV   + + 
Sbjct: 520  GQFVATVSPL-HISDTRLVYPERKFKIGGKVKARILNVDNRGRIYATMKKSLVNLEQDET 578

Query: 441  AILSSYAEA-TDRLITHGWITKIE---KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 496
             I+SSY  A T +      +  +E   K GC V F+ GV+GF P +E+      +P    
Sbjct: 579  PIISSYEIAKTAKEKNEKTLATVEVFRKTGCIVSFFGGVRGFLPNAEISEVFVKKPEQHL 638

Query: 497  HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAV 551
             +GQ V  R++       RI  +  +   +  E     + LV   S+++  V   T +A+
Sbjct: 639  RLGQTVVVRLLKVDAEDSRILATCKVSNAQAQEQKETIEQLVPGRSMINVTVVEKTKDAL 698

Query: 552  VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAK 608
            ++  + K   +G +   HL+D  +E        I  G    + LV+D E+   +  ++ K
Sbjct: 699  IIE-MDKVELRGVLQVGHLSDSRIEQNRADFKKIAIGTHL-RGLVIDKETRTQVFNMTLK 756

Query: 609  YSLINSA--QQLP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 663
             SLI +A  ++LP   SD   +  ++ + GYV +I + G F+ F G+  G    S AV+ 
Sbjct: 757  KSLIEAAEKEELPTSYSDIKAVSKDTPLCGYVKSISDKGLFIAFNGKFVGLVLPSYAVES 816

Query: 664  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 723
            +  D+SKT+++ QSV + +L  + E  R  L+LK     S            +++ A  +
Sbjct: 817  RDVDISKTFFINQSVSAYLLRSDDENERFLLTLKAPKIESK-----------KKEPASDE 865

Query: 724  SSKHNGSELKWVEGFIIGSVIEG--KVHESNDFGVVVSFEEHS--------DVYGFITHH 773
             +    + +K +  + IG +++G  K  + N   ++++ + H         D Y  I + 
Sbjct: 866  VTNPIDNSIKKLSDYTIGKIVKGTIKAVKKNQLNIILADDLHGRIDVSEVYDNYSDILNT 925

Query: 774  QLAGATVESGSVIQAAIL---DVA-----------KAERLVDLSLKTVFIDRFREANSNR 819
            +   +  ++GS+I+A I+   D+            K   +++LS+K   +     +  NR
Sbjct: 926  KAPLSQFKNGSIIEAKIVGNHDIKSHKFLPITHQIKKGTVLELSIKPSVL----SSEDNR 981

Query: 820  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ--KF 876
                      + KD+ +   +   V     N+L L++ P     +    +++   +  K 
Sbjct: 982  PL--------SLKDISIGDELVGFVNNYSLNFLWLTISPILKAKLSMFDLTEDGLELSKN 1033

Query: 877  PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 936
             +  F  G ++   V A+ S+               T T  S   K   S  V  ++ A 
Sbjct: 1034 IEDNFPLGSAIPVKVTAIDSTHEFA-----------TVTGRSHVVKDFDSIAVNDVIPAR 1082

Query: 937  ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKP 994
            I +I    L L  G    G +  T+  D  S  +   + + K+ + V+A+++A  K NK 
Sbjct: 1083 IGKIFENFLLLDLGNSITGLVFATDALDSFSTSLNEAYGD-KVNRIVSAKVVAIDKKNKK 1141

Query: 995  DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1054
             +  S   E S  P++ + S           D+  G  V G V  V+++   + +SR ++
Sbjct: 1142 -INLSLRSEASKVPTVTSYS-----------DLKQGDIVHGLVKTVNDKGIFVYLSRTVE 1189

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1101
            A  F+  S    + L+++++ +   + V G V+    +K +L + LR
Sbjct: 1190 A--FVPISKLSDAYLKDWKKFYKPMQHVIGKVVKSEDDKHIL-ITLR 1233



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 28/244 (11%)

Query: 173  VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT-NWKN 231
            V KD   I+++ ++P      R+  I EN ++L      TG V      ++F T+ N   
Sbjct: 1066 VVKDFDSIAVNDVIPA-----RIGKIFENFLLLDLGNSITGLVFATDALDSFSTSLNEAY 1120

Query: 232  DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP----SHVKVGDIYDQSKVVRVDR 287
                ++ V+A+++ +D  ++ + L+L      ++ P     S +K GDI         D+
Sbjct: 1121 GDKVNRIVSAKVVAIDKKNKKINLSLRSE--ASKVPTVTSYSDLKQGDIVHGLVKTVNDK 1178

Query: 288  GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLAT 344
            G+ + L       +  A+V IS +++  ++  +K YK    V  +++     +H+  L T
Sbjct: 1179 GIFVYL-----SRTVEAFVPISKLSDAYLKDWKKFYKPMQHVIGKVVKSEDDKHI--LIT 1231

Query: 345  GILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 401
              L+ S   G   ++  + D+K G V KG V  +  FG  ++       +  L H+SE  
Sbjct: 1232 --LRESEVNGDLKVLKNYDDIKVGEVFKGSVKNITDFGVFIKLDNTAN-VTGLAHISEIA 1288

Query: 402  IVKP 405
               P
Sbjct: 1289 DSTP 1292


>gi|363735321|ref|XP_421739.3| PREDICTED: protein RRP5 homolog [Gallus gallus]
          Length = 1793

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 379/1396 (27%), Positives = 639/1396 (45%), Gaps = 154/1396 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI---EANED-NLLPTIF 53
            M   G + EV   +LVI LP GL G   +   +DA   +L  ++   E  ED N L  ++
Sbjct: 42   MLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAYSELLSKQVTQGELLEDLNSLSDLY 101

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  ++  K   G+R I LS+    + KGLS   +  GM+L+ +V S+EDHG
Sbjct: 102  SPGMLVRCVVTSVE--KSADGRRSIKLSINPKSVNKGLSASALTSGMLLSGFVSSVEDHG 159

Query: 114  YILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP         A   G D+K G  L  V+  +    +VV LS+D   
Sbjct: 160  YLIDIGVSGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCVIEEVKNEGRVVRLSADRSE 219

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            V+  +  + +  ++  L+PG++V  +VQ +   GV L+FL+ FTG VD  H+     T  
Sbjct: 220  VAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGVSLTFLSSFTGIVDFMHVDPEKST-- 277

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
               +Y+ ++ V A IL   PTS+ V LTL    LH    P+ +   ++G + ++S V   
Sbjct: 278  ---NYSPNQMVKACILSTHPTSKVVRLTLRQAFLHPGGSPNQLSNDRIGAVVEESTVKAF 334

Query: 286  DRGLGLL--LDIPSTPVSTPAYVTISDVAEEEVRKLEK--KYKEGSCVRVRILGFRHLEG 341
             +  G +  LD      + P +++       + RK  K   +K G   + RI+ +  ++ 
Sbjct: 335  YKQFGAVFQLDDGMLAFARPKHLS-------KTRKSFKPAAFKAGCKHKCRIIDYSLMDE 387

Query: 342  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 401
            +    LK    E     + D+  G V++GKV+++   G  V+   G+K L P  H+++  
Sbjct: 388  MCIVSLKHQIIEARFLRYEDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADVI 447

Query: 402  IVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 459
            + +P KK+ VG E+  RVL      K++ +T KKTLV+SKL +LSSY +A   LITHG++
Sbjct: 448  LKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLVQSKLPVLSSYEDAEPGLITHGFV 507

Query: 460  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
                + GC V+FYN V+G  P++EL  +P   P  ++H GQVVK  ++   P   R+ LS
Sbjct: 508  VCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQERLLLS 567

Query: 520  FMMKPTRVSEDD-----------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK-GTIPT 567
            F +    V E               ++G +V   V     N + V ++  G +    +PT
Sbjct: 568  FRLSSRTVPEGRSECIPKKKQQVKYQIGEMVDVEVLKKNENGLEVSILEDGGNVIAWLPT 627

Query: 568  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 625
             HL+D + ++ ++   ++ G    +++ L ++   ++L  K ++I++ Q  Q+    S I
Sbjct: 628  VHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVRSFSEI 687

Query: 626  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
             P  ++ GYV  ++  G FV F   +TG AP+    D    D    + VGQ+V + ++ +
Sbjct: 688  QPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVMSI 747

Query: 686  NSETGRITLSLKQSCCSSTDA-----SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 740
            + E  R+ LSLK S CSS D+     S + ++F   E+I  L   +      + V   + 
Sbjct: 748  DEEKQRVLLSLKVSECSSGDSAAESFSLLNQYFKEVEEIRNLLRRREESGLARCVCELVP 807

Query: 741  GSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAE 797
            G  ++  V +  + G   +      V G     T + L G  V  G   +  +L V    
Sbjct: 808  GKELQLVVQDVMEDG--SALFSGGCVRGLTVTATRYHLGGKNVIPGEKAKGLVLHVDAIT 865

Query: 798  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 857
              V +SL+   +                 K+ A + L  +    AIV+ + E + ++SL 
Sbjct: 866  SKVYVSLREELL-----------------KKRAKQRLTKNSQHPAIVQHIAEEFAIVSLL 908

Query: 858  EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL--------- 907
            +          S +N T +F  ++   GQ + AT + +  ++  G LL +          
Sbjct: 909  DSGRLAAIPIASHFNDTFRFDSEKLKVGQRIYAT-LKMVKANDLGVLLAVQDPAKKNAFV 967

Query: 908  --KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 965
              +  SET    +  A  K S  +G +V   +  +KP  + +       G IH + + D+
Sbjct: 968  RDRKESETALEETLAAAVKHSLSLGDIVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDE 1027

Query: 966  KSNVVENLFSNF--KIGQTVTARIIAKSN----------KPDMKKSFLWELSIKPSML-- 1011
               V  + F  +  K GQ VTAR+I   +           P   +S + ELSI+PS +  
Sbjct: 1028 ---VPIHSFPTYTLKAGQKVTARVIGGRDVNTHRYLPITHPHFTRS-VPELSIRPSEIEG 1083

Query: 1012 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDN--EWALLTISRHLKAQLFILDSAYEPSEL 1069
             V  +      +    + GQ VT +V K +    W  + ++  ++ ++  L  +     L
Sbjct: 1084 EVETMRDDTREKLGPYNTGQTVTCFVRKYNTLKNWLEVEVTPDVRGRVPRLLLSLNTKVL 1143

Query: 1070 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1129
            +  ++ F  G+A++  V   +  +  L L L   Q                  +  G I 
Sbjct: 1144 KHPEKNFKNGQALSATVTGTDATETNLFLSLTGIQS-----------------LEPGTIT 1186

Query: 1130 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1189
             G ++K++  + GL + +     G+V    L +         Y E    PLS +  G+ V
Sbjct: 1187 VGMVAKMIPHI-GLTITLPGGKAGKVSIFHLSD--------KYTES---PLSDFKIGKVV 1234

Query: 1190 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1249
            +C +L           ++LSLR S   ++  NS  +  DV+     +  I+D+    +V+
Sbjct: 1235 RCYILS-----NENGKIQLSLRQS--RLNPRNSRKVE-DVE-----ITCIKDVKKGQLVR 1281

Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLS 1306
            GYVK+VT  G F  LS  L  ++L  N+S  +V+     EK  P GKL+  +VL V    
Sbjct: 1282 GYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLDVNKKE 1341

Query: 1307 KRVEVTLKTSDSRTAS 1322
              VE++L   D+   S
Sbjct: 1342 NHVELSLLPEDTEMPS 1357



 Score =  276 bits (705), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 185/265 (69%), Gaps = 3/265 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P++ D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI  REE EKLN+W
Sbjct: 1524 PQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQEKLNVW 1583

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            VA  NLEN YG   EE ++KVF+RA+QY +P KV   L  +Y  +E+ K A+EL + M++
Sbjct: 1584 VALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLR 1641

Query: 1655 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            +F+    VWL+    LLKQ Q E    +++RAL +LP  +H+  IS+ A LEF+ G  + 
Sbjct: 1642 RFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFRFGDPEH 1701

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
             +++FE  L+ YPKRTD+WSIY+D  I+ G    IR +FER I L+L PKKMKF FK+YL
Sbjct: 1702 AKALFESTLNSYPKRTDIWSIYMDIMIKQGSQKEIRDIFERVIHLNLAPKKMKFFFKRYL 1761

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVES 1798
            +YEK  G  E +  VK  A+EYVE+
Sbjct: 1762 DYEKKYGTTETVMAVKTAALEYVEA 1786



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 8/173 (4%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            + ED+    ++QG V ++   G  + ++  +   V   +L+D  ++ PEK++ +G  V  
Sbjct: 404  RYEDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADVILKQPEKKYNVGDEVRC 463

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITI 1354
            RVL   P  K++ +TLK    +T  QS++  LS   +   G I  G +     +G  +  
Sbjct: 464  RVLECNPAEKKLFLTLK----KTLVQSKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKF 519

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             N ++ GL   +ELS + +   + ++  G+ VKV +LK + ++ R+ L  + S
Sbjct: 520  YN-DVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQERLLLSFRLS 571



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 4/115 (3%)

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSE--INNLSNLHVGDIVIGQIKRVESYGLFI 1352
            V  RV+ +     R+ +  + S   +A Q E  + + S +  G ++IG +++V  +G+F+
Sbjct: 649  VLPRVMCLSDKGDRI-ILCRKSAVISAVQEEQVVRSFSEIQPGVLLIGYVRKVMPFGVFV 707

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
                  + GL     +S+  V + +  +  G+ V  K++ +D+EK+R+ L +K S
Sbjct: 708  EFP-FGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLSLKVS 761


>gi|74190944|dbj|BAE28246.1| unnamed protein product [Mus musculus]
          Length = 1414

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 390/1405 (27%), Positives = 651/1405 (46%), Gaps = 164/1405 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 84   MRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLLRLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  LD    E GK+ + LS+    + K LS + ++  M+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPDMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FL      E     N G   K G  L  VV  +     VV LS +   
Sbjct: 202  YLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSLSVEHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+       
Sbjct: 262  VSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE-----PK 316

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
                Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D   V   
Sbjct: 317  KMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  ++ LA  
Sbjct: 377  FKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++  +  P
Sbjct: 434  SLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+  G E+  RVL    ++K++ +T KKTLV SKL++++ Y  A   L THG I +++
Sbjct: 494  EKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 522
             +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ LSF ++
Sbjct: 554  DYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLL 613

Query: 523  KPTRVSEDDL---------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
              +R  +  +         V++G LV   V   T   + V ++    +   +PT HL+DH
Sbjct: 614  SDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPTPHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
              +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I P  ++
Sbjct: 673  AANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V+    R
Sbjct: 733  IGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQR 792

Query: 692  ITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVIEGK 747
            + LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G V++  
Sbjct: 793  MLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMVLDAV 852

Query: 748  VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V +SL  
Sbjct: 853  VHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEVHVSLHQ 912

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  H + ++
Sbjct: 913  DLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETGHLVAFS 954

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS----------ETET 915
             +S  N T  F  ++   GQ V  T+       T   L+L ++  +          ++ET
Sbjct: 955  LISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTRMPVQRDSET 1012

Query: 916  SSSK--------------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 955
               K                    ++KK+ S  +G  V   I  +K   + +    GF G
Sbjct: 1013 VDDKGEEKEEEEEEEEKEEENLTVKSKKRHSLAIGDKVTGTIKAVKATHVVVTLADGFVG 1072

Query: 956  RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSI 1006
             IH + + DD   V  +  +  K G+ VTAR+I     K++K  P     F   + ELS+
Sbjct: 1073 CIHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSV 1131

Query: 1007 KPSMLTVSEIGSKLLFEECDVSI-----GQRVTGYV--YKVDNEWALLTISRHLKAQLFI 1059
            +PS L  S        E     I     GQ VT +   Y V  +W  + I   ++ ++ +
Sbjct: 1132 RPSELKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDIRGRIPL 1191

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISNDN 1118
            L ++     L+   ++F +G+A+   V+  +  +  L L ++ P++              
Sbjct: 1192 LLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR-------------- 1237

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
                + EG++  GR+ K++    GL V       G+V    L +         Y E    
Sbjct: 1238 ----LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SYSEA--- 1281

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
            PL  +   + V+C +L  +  V     + LSLRSS     + N       ++ P   +  
Sbjct: 1282 PLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP--EINS 1328

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-----FPIGK 1293
            IED+     ++GYVK V      I L   +      S++S+     PEKE      P GK
Sbjct: 1329 IEDVKEGQHLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNGCLPEGK 1386

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDS 1318
            LV  +VL V P+   +E++L  SD+
Sbjct: 1387 LVTAKVLRVNPMKNLIELSLLPSDT 1411



 Score = 68.2 bits (165), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
             +   T+  S I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 523  KT-LVTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 581  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611


>gi|255714000|ref|XP_002553282.1| KLTH0D13156p [Lachancea thermotolerans]
 gi|238934662|emb|CAR22844.1| KLTH0D13156p [Lachancea thermotolerans CBS 6340]
          Length = 1731

 Score =  402 bits (1032), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 381/1340 (28%), Positives = 625/1340 (46%), Gaps = 201/1340 (15%)

Query: 533  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
            + +G++V G       +  +   I  G  K T+P  H++D        +   K G +   
Sbjct: 508  IPVGTIVPGCEITEVSDKGIKLSIFGGQFKATVPPLHISDI--RLVYPERKFKIGSKVKG 565

Query: 593  LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH-------PNSVVHGYVCNIIETGCFV 645
            +L+   E   L +S K SL+N  ++    AS           +S +   V      GC V
Sbjct: 566  ILINATERGQLFMSLKKSLVNLDREETELASSFEDIEKIASSDSKLAATVDIFKPNGCIV 625

Query: 646  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
             FL  L GF P S   +           +GQ+V   +L  N E  R+ ++ K    SS  
Sbjct: 626  SFLNGLRGFLPNSNISEAYVKRPQDHLRLGQTVIVKVLQHNKEQNRVIVTCK---VSSEA 682

Query: 706  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHS 764
            AS  +E                       +E  I+G S+I+  V E     +VV  +  +
Sbjct: 683  ASLQREA----------------------IENMIVGRSIIKVAVVEKTKDSIVVE-QVGT 719

Query: 765  DVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
             + G +    L+ + VE           GS ++  ++D  +  R+ +LS K   +    +
Sbjct: 720  GLRGVVYVGHLSDSRVEQNRAQLKKLKIGSELEGLVIDKDERTRVFNLSCKKSLMKDAEK 779

Query: 815  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKE---------NYLVLSLPEYNHSIGY 865
            +      Q  K++       G H   N  V+ V E          ++ L LP Y      
Sbjct: 780  SLLPLNYQDVKQR-------GNHSPFNGYVKSVSEKGVFVAFNGQFVGLVLPSYAVDSRD 832

Query: 866  ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA---- 921
             S+S          +F   QSV A    L +     R LL  K     ++S +  +    
Sbjct: 833  VSLS---------SKFYVNQSVSA--FLLRTDDDNERFLLSFKEPKNEKSSKTPESERPA 881

Query: 922  --------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 971
                    K+ S + +G + +A++  +K  +L +      HGRI I+EV D   ++ +  
Sbjct: 882  INPVDQSIKEVSEFALGKVTKAKVKAVKKNQLNVVLSDNLHGRIDISEVFDKFEDIKDPK 941

Query: 972  NLFSNFKIGQTVTARIIA----KSNK-----PDMKKSFLWELSIKPSMLT-VSEIGSKLL 1021
               + FK G  +  ++I     KS+K         K+ L ELS KPS L  V+    K  
Sbjct: 942  KPLATFKKGDVLDVKVIGFHDVKSHKFLPVSHRSSKNVLIELSAKPSSLAGVNHATIK-- 999

Query: 1022 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGK 1080
                DV +G  + G+V  V  +   LT+S  LKA++   D A E S+L    +  F +G 
Sbjct: 1000 ----DVKVGDSIVGFVNNVSKDIMWLTVSPSLKAKIDFFDLADENSQLGHGIEDSFPLGC 1055

Query: 1081 AVTGHVLSINKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1139
            A+   V+SI++++  L +  R     GI D             I+ GD +  R+ KI   
Sbjct: 1056 ALRTKVVSIDQDRNTLSVSARTHDIKGIKD-------------INVGDCLPARLLKITDS 1102

Query: 1140 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1199
               L++++G ++ G V F        +D L  Y +   D +    +   V  KV+ I + 
Sbjct: 1103 Y--LLLELGENVRG-VAFA-------TDALDDYSKPLKD-VYANQKNSIVSAKVISIDKD 1151

Query: 1200 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1259
              G  ++ L   +  DG + T+                  EDL    +V+G VK +T KG
Sbjct: 1152 -DGKLNLSLRSENPRDGTAKTH------------------EDLKRGDVVRGLVKKITEKG 1192

Query: 1260 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1319
             FI LS  L A V +S L+D +++   K F   + V G+V++ +  S  + VTLK     
Sbjct: 1193 IFIYLSSTLQAFVPVSKLTDSFIKDWRKFFKPMQSVVGKVVNCDDDS-HILVTLK----- 1246

Query: 1320 TASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSED 1371
               +SE+N       + +++ VG+I  G +K V  +GLF+ ++NT N+ GL H +E+++ 
Sbjct: 1247 ---ESEVNGELRILKSYNDIKVGEIFEGAVKNVTDFGLFVKLDNTVNVTGLAHKTEVADS 1303

Query: 1372 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEV 1431
             V ++ +I+  G+KVK  +LKV+ +K+++SLG+K+SYFK   +N Q S + E DE  E  
Sbjct: 1304 AVGDLASIFGVGDKVKAIVLKVNPDKKQLSLGLKASYFKESNEN-QASDDAEGDEGSESS 1362

Query: 1432 GS--YNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD-NG 1488
                 N     E+ S  ++  D E ED G                  +   +QP +  +G
Sbjct: 1363 DEEVVNEEGQ-ESDSDGMEVDDHEGEDKG------------------DKSKQQPVLSSDG 1403

Query: 1489 ISQNQGHTDEAKTIDEKNNRHAKKKEKEER-------EQEIRAAEERLLEKD--APRTPD 1539
            +S + G       +D+     + ++E           ++ ++  E++ ++ +  AP +  
Sbjct: 1404 LSLSAGFDWTTSILDQAQEEESSEEEDFSETKRSKKKKKSVQGVEDQTIDINTRAPESVG 1463

Query: 1540 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1599
            +FER++  +PNSS +W+ YMAF L + +++KAR +AERAL+TI+ REE EKLNIW+   N
Sbjct: 1464 DFERMIMGNPNSSVIWMNYMAFQLQLGEIDKAREVAERALKTISFREEAEKLNIWIGLLN 1523

Query: 1600 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KH 1658
            LEN +G   E  + +VF RA QY D   +H  L+ +++ +   + A  L     KKF   
Sbjct: 1524 LENTFGT--ESTLNEVFSRACQYMDSYTIHSKLINIFQMSHNFEKASLLFKTTAKKFGAE 1581

Query: 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
               +W+     L++Q + E  + V+  AL SLPR  HI+ + + A LEF  G +++GRS+
Sbjct: 1582 KVSIWVLWSDFLIEQGRAEEARQVLASALQSLPRRNHIEVVRKFAQLEFAKGDSEQGRSL 1641

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1777
            FEG+L++ PKR DLW++YLDQEI+ GD   +  LFER ++  L  K+ KF F K+L++E+
Sbjct: 1642 FEGLLADTPKRIDLWNVYLDQEIKSGDKKRVENLFERVVNRKLTRKQAKFFFGKWLDFEE 1701

Query: 1778 SVGEEERIEYVKQKAMEYVE 1797
            +  +++  EYVK KA EYVE
Sbjct: 1702 ASDDQKTAEYVKAKASEYVE 1721



 Score =  129 bits (324), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 289/1271 (22%), Positives = 519/1271 (40%), Gaps = 181/1271 (14%)

Query: 5    GVVAEVNEKDLVICLPGGLRGLARAADALDPI----------LDNEIEANEDNL------ 48
            G +++VN+ DL + L   L G     +  +P           ++++ EA++D        
Sbjct: 126  GRISKVNKHDLCVALSDNLCGFVTLPNISEPFTKLLEDIDESMESDKEASDDESDAEYDN 185

Query: 49   --------------------LPTIFHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLS 85
                                L   F  GQ + C V     LD + K+  +++I LS+  S
Sbjct: 186  DDDDQKSSQAQAAKLKDLPDLNNFFTQGQWLRCSVHSNSALDKNSKK--QKRIELSIEPS 243

Query: 86   LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-L 144
               + L  E +     +   VKSIEDHG IL  G+   TGF+ +      S  +  PG +
Sbjct: 244  ATNQ-LIEEDLARNCTIQCAVKSIEDHGAILDVGMDGITGFISKKEC--ESLPNFAPGTV 300

Query: 145  LLQGVVRSIDRTRKVVY-LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 203
             L  V +   RT  V +   +    VS+         S+D ++PG  V    Q    NGV
Sbjct: 301  FLANVAKKSGRTVTVNFEFKNKKSKVSQIS-------SVDAVIPGQAVDFLCQKKTSNGV 353

Query: 204  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 263
            +        G ++I   Q     T+ K+D       N R+  +               L 
Sbjct: 354  IGKVFGLVDGFLNI--SQQAIFYTDSKSDQAYPIGSNTRVRIIAS-------------LK 398

Query: 264  NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 323
            N++    V + D+     +     G   L   P         V   D ++    KL K +
Sbjct: 399  NKSGDKFVILSDLPSVLSLASETSGNSALEAFPVGYTFENCEVKGRD-SQYFYLKLNKDF 457

Query: 324  -------KEGSC-----VRVRILGFRHLEG---LATGILKASAFEGLVFTHSDVKPGMVV 368
                   K G       V  R+LG+   +G   LAT   K  A E L     D+  G +V
Sbjct: 458  LGRVHLSKTGEQEPSGEVSARVLGYDSFDGYYQLATDP-KVIAVEYL--RPIDIPVGTIV 514

Query: 369  KG-KVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK- 425
             G ++  V   G  +  F G  KA  P  H+S+  +V P +KFK+G+++   ++    + 
Sbjct: 515  PGCEITEVSDKGIKLSIFGGQFKATVPPLHISDIRLVYPERKFKIGSKVKGILINATERG 574

Query: 426  RITVTHKKTLV---KSKLAILSSYAE----ATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
            ++ ++ KK+LV   + +  + SS+ +    A+        +   + +GC V F NG++GF
Sbjct: 575  QLFMSLKKSLVNLDREETELASSFEDIEKIASSDSKLAATVDIFKPNGCIVSFLNGLRGF 634

Query: 479  APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-----TRVSEDDLV 533
             P S +       P     +GQ V  +++       R+ ++  +        R + ++++
Sbjct: 635  LPNSNISEAYVKRPQDHLRLGQTVIVKVLQHNKEQNRVIVTCKVSSEAASLQREAIENMI 694

Query: 534  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQ 592
               S++   V   T +++VV  +  G  +G +   HL+D  +E        +K G E + 
Sbjct: 695  VGRSIIKVAVVEKTKDSIVVEQVGTGL-RGVVYVGHLSDSRVEQNRAQLKKLKIGSELEG 753

Query: 593  LLVLDNESSNLL-LSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVR 646
            L++  +E + +  LS K SL+  A++  LP    D      +S  +GYV ++ E G FV 
Sbjct: 754  LVIDKDERTRVFNLSCKKSLMKDAEKSLLPLNYQDVKQRGNHSPFNGYVKSVSEKGVFVA 813

Query: 647  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            F G+  G    S AVD +   LS  +YV QSV + +L  + +  R  LS K+     +  
Sbjct: 814  FNGQFVGLVLPSYAVDSRDVSLSSKFYVNQSVSAFLLRTDDDNERFLLSFKEPKNEKSSK 873

Query: 707  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG--SVIEGKVHESNDFGVVVSFEEHS 764
            +   E   +     + QS       +K V  F +G  +  + K  + N   VV+S   H 
Sbjct: 874  TPESERPAIN---PVDQS-------IKEVSEFALGKVTKAKVKAVKKNQLNVVLSDNLHG 923

Query: 765  --------DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDL---SLKTVFIDR 811
                    D +  I   +   AT + G V+   ++     K+ + + +   S K V I+ 
Sbjct: 924  RIDISEVFDKFEDIKDPKKPLATFKKGDVLDVKVIGFHDVKSHKFLPVSHRSSKNVLIEL 983

Query: 812  FREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSD 870
                 S + +          KD+ V  ++   V  V ++ + L++ P     I +  ++D
Sbjct: 984  -----SAKPSSLAGVNHATIKDVKVGDSIVGFVNNVSKDIMWLTVSPSLKAKIDFFDLAD 1038

Query: 871  YNTQ--KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD 928
             N+Q     +  F  G ++   V+++                  T + S++    K   D
Sbjct: 1039 ENSQLGHGIEDSFPLGCALRTKVVSIDQDRN-------------TLSVSARTHDIKGIKD 1085

Query: 929  V--GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 986
            +  G  + A + +I    L L+ G    G    T+  DD S  ++++++N K    V+A+
Sbjct: 1086 INVGDCLPARLLKITDSYLLLELGENVRGVAFATDALDDYSKPLKDVYANQK-NSIVSAK 1144

Query: 987  IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1046
            +I+  +K D K      LS++         G+    E  D+  G  V G V K+  +   
Sbjct: 1145 VIS-IDKDDGK----LNLSLRSEN---PRDGTAKTHE--DLKRGDVVRGLVKKITEKGIF 1194

Query: 1047 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106
            + +S  L+A  F+  S    S ++++++ F   ++V G V++ + +  +L + L+  +  
Sbjct: 1195 IYLSSTLQA--FVPVSKLTDSFIKDWRKFFKPMQSVVGKVVNCDDDSHIL-VTLKESEVN 1251

Query: 1107 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKNIC 1164
               + +   ND     I  G+I  G +  +     GL V++    ++ G  H TE+ +  
Sbjct: 1252 GELRILKSYND-----IKVGEIFEGAVKNVTD--FGLFVKLDNTVNVTGLAHKTEVADSA 1304

Query: 1165 VSDPLSGYDEG 1175
            V D  S +  G
Sbjct: 1305 VGDLASIFGVG 1315


>gi|212530734|ref|XP_002145524.1| rRNA biogenesis protein RRP5, putative [Talaromyces marneffei ATCC
            18224]
 gi|210074922|gb|EEA29009.1| rRNA biogenesis protein RRP5, putative [Talaromyces marneffei ATCC
            18224]
          Length = 1807

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 367/1391 (26%), Positives = 663/1391 (47%), Gaps = 174/1391 (12%)

Query: 496  YHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLVSGVVD--VVTPN 549
            +  G   K RI+          LSF  K    P    ED  V LG +V G ++  ++ P 
Sbjct: 500  FKTGSKHKARIIGYNSVDNLYLLSFEKKVIDQPYIRLED--VPLGEVVKGKIEKLLIGPE 557

Query: 550  AV--VVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 605
             +  ++  IA G + G +P+ H AD  L+H    +   + G     ++L ++ +   + L
Sbjct: 558  GIDGLILSIADGIT-GLVPSMHFADTVLQHP---EKKFREGLTVSARVLSVNLDKRQMRL 613

Query: 606  SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 665
            + K SL+NS   +  D + I P     G + NI   G  V+F G +  F P S+  +   
Sbjct: 614  TLKKSLLNSDSAIWKDYNDIVPGKQSPGTLINIQPNGATVQFYGTVRAFLPVSEMSEAYI 673

Query: 666  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 725
             D S+ +  GQ V  + + V++   ++ +S K     ST +   +E F  E +  +L   
Sbjct: 674  KDPSQHFRKGQVVNVHAISVDTAAEKLVVSCKDP---STSSEAYREAFG-EIRPGVL--- 726

Query: 726  KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV 785
                     V G +     +  + + + +GV         V G       A A V  G  
Sbjct: 727  ---------VTGTVFEKSSDDLLLKLDKYGVTARLSAIHLVDGDAAKAASAFAKVRVGQK 777

Query: 786  I-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 844
            +    +L+  +  RL+ ++ K+          S R+A KK       ++L V   +   V
Sbjct: 778  LSDLLVLEAKRVHRLIKVTHKS----------SLRKALKKNSLPATFEELEVGTEITGFV 827

Query: 845  E-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 903
              I      V  L   N  +    V D +  K P       QS+ ATV  +   +   R 
Sbjct: 828  RGITSHGIFVEFLGGLNGLLPRRLVDDEHANK-PDFGLYRSQSLTATVHQIDEDNR--RF 884

Query: 904  LLLLKAISETETSSSKRAKKK-------------------SSYDVGSLVQAEITEIKPLE 944
             L ++ +     S  +++K+K                   + + +G + +A I  IK  +
Sbjct: 885  TLTMRPLELPTGSRPEQSKEKPLPEDEKLANPVDESIHTAADFTIGKVTKARIASIKETQ 944

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK----- 993
            + +       GRI ++EV D   ++ +       F++ + +  RI+    A+S++     
Sbjct: 945  INVVLADNLQGRIDVSEVFDKWDDIKDRKQPLQKFRVKEILPVRILGLHDARSHRFLPIS 1004

Query: 994  PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHL 1053
                K  ++ELS KPS ++ +E    L  E+  V +G  + G+V  V N++  +++S ++
Sbjct: 1005 HRTSKHPVYELSAKPSFISSAE-PKPLTLEQ--VKVGSSMIGFVNNVANDYLWVSLSPNV 1061

Query: 1054 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1113
            + ++  +D + + S L + +  + +G A+   V  I+ +K  L L ++      S    D
Sbjct: 1062 RGRVRAIDLSDDLSTLADLESNYPVGSALKVRVTGIDLDKGHLDLSVK------SGSARD 1115

Query: 1114 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1173
            +S D +      G I+ GR++K+      +++Q+   L G V+ T++     +D  S  D
Sbjct: 1116 LSFDKLS----RGMILPGRVTKVTEK--QIIMQLSDTLVGAVNLTDM-----ADDYSKID 1164

Query: 1174 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1233
                   + Y + + ++  ++++ ++ +  F   LSLR S           LS+ +    
Sbjct: 1165 ------TTIYKKNEILRACIIDLDKSKKKIF---LSLRPS---------KVLSSTLPVRD 1206

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            + +  ++ L PN +V+G+V+ V   G F+ L   + A + +S+LSD +++  + EF   +
Sbjct: 1207 REITSMDQLKPNDVVRGFVRRVADNGLFVTLGHNVSAYIRISDLSDSFLKEWKDEFQTDQ 1266

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
            LV GR++ V+  + R++++LK S      ++ I  + +L VG +V G++++VE +G FI 
Sbjct: 1267 LVKGRIILVDSENNRLQMSLKESVLDPNFKTPIT-IRDLKVGQVVTGKVRKVEDFGAFIV 1325

Query: 1354 IENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            I+ + N+ GLCH S+++E +V +   ++ AG+ VK KILK+D  + ++S G+K+SYF  D
Sbjct: 1326 IDGSANVSGLCHRSQMAEQNVQDARKLFEAGDIVKAKILKIDANQGKVSFGLKASYF-GD 1384

Query: 1413 ADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVP 1472
             +        + D +++E G       L++   + +DM +   D       + ES     
Sbjct: 1385 EEGSDSEGGSDGDLSMDEAGGVE----LDSDEDSDEDMSVGGVDIEDASEDEDESSDDEE 1440

Query: 1473 PLEVNLDDEQPDM------------DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQ 1520
                 +   Q D             D G+S     TD     DE +N     K+K  R+ 
Sbjct: 1441 DASATVKRSQSDKGGLDVGGFDWTGDAGLSSTSKLTDRQAVGDEASN-----KKKRIRKP 1495

Query: 1521 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            EI+  +   L+   P++  ++ERL+   P+SS +W++YMAF L + +V KAR I +RA++
Sbjct: 1496 EIQVDQTGDLDARGPQSVADYERLLLGEPDSSLLWLQYMAFQLELGEVVKAREIGQRAIR 1555

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            +I+I ++ EKLNIWVA  NLEN YG   ++++ +VF+ A QY D ++++  L+ +Y ++ 
Sbjct: 1556 SISIGQDTEKLNIWVALLNLENTYGT--DDSLEEVFKNACQYNDTQEIYERLISIYIQSG 1613

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLL---KQQQEGVQAVVQRALLSLPRHKHIKF 1697
            +N+ ADEL    +KK  +S + +       L       +  + ++ RAL SLP + H+  
Sbjct: 1614 KNEKADELFKTALKKKVYSGQKFFVNYATFLFDTLSSPDRGRDLLPRALQSLPPNTHVDT 1673

Query: 1698 ISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1755
              +   LEF+  +G  +RGR++FEG+LS +PKRTDLW+I LD E++ GD D +R +F+R 
Sbjct: 1674 TCKFIQLEFRSPSGDVERGRTLFEGLLSSFPKRTDLWNILLDLEMKQGDADQVRSVFQRV 1733

Query: 1756 ISLS------------------------LPPKKMKFLFKKYLEYEKSV----GEEERIEY 1787
            + +S                        L PKK +F FKK+L++E+ +    G E+ +E 
Sbjct: 1734 LGISTAPKTQSKKKGAIPAPSSTEAQKKLKPKKARFFFKKWLDFEEKLAAEGGNEKMVEE 1793

Query: 1788 VKQKAMEYVES 1798
            VK +A +YV S
Sbjct: 1794 VKARAADYVNS 1804



 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 296/1301 (22%), Positives = 552/1301 (42%), Gaps = 132/1301 (10%)

Query: 5    GVVAEVNEKDLVICLPGGLRG---LARAADALDPILD---------NEIEANEDNLLPT- 51
            G V  +N  D+ + LP  L G   L   ++  D  ++         +++E+ ED+L P+ 
Sbjct: 164  GQVTSINSHDIGLALPNNLTGYVPLTAISETFDKKIEKVLNAEDDGDDVESEEDSLDPSD 223

Query: 52   IFHVGQLVSCIVLQLDDDKKEIG--KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
             F++GQ +   V    +   + G  K+KI L+L       GL+   + EG+++ A V S+
Sbjct: 224  YFYIGQYLRAYVTSTGNSSADPGANKKKIELTLDPRQTNSGLAESDLVEGVMVQASVTSV 283

Query: 110  EDHGYILHFGL-PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            EDHG ++  GL     GF+     A     +VK G +L  VV  ++ +R +  LSS    
Sbjct: 284  EDHGCVMDIGLGKKLKGFM-----ASTDDSNVKEGAVLLCVVTGVNASRTIFQLSSKLQA 338

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
             +   +      +I   +PG      + S+ E G++   +     T+D  H      + +
Sbjct: 339  AASPKSVLKSAPTIQAFLPGTAAEMLLTSVTETGLVGKIMGLLDATIDFVHSGANSGSFD 398

Query: 229  WKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLHNRAPPSHVK-----VGDIYDQSK 281
                Y    K+ ARI    P +    VG ++   +L  +   S  +     +G I D  K
Sbjct: 399  LTTKYQLGAKIKARITCTFPAAEPFKVGASILENVLDWKRTLSTQEEDSPSIGTILD-VK 457

Query: 282  VVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 340
            V  V+ GLGL  +  S       +++ +SD   E +   +  +K GS  + RI+G+  ++
Sbjct: 458  VATVEPGLGLYAEFGSPKHIGFVHISRVSDGTVETISAEQGPFKTGSKHKARIIGYNSVD 517

Query: 341  GLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLP 395
             L     +    +       DV  G VVKGK+    I  +   G I+    G+  L P  
Sbjct: 518  NLYLLSFEKKVIDQPYIRLEDVPLGEVVKGKIEKLLIGPEGIDGLILSIADGITGLVPSM 577

Query: 396  HMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRL 453
            H ++  +  P KKF+ G  +  RVL V    +++ +T KK+L+ S  AI   Y +     
Sbjct: 578  HFADTVLQHPEKKFREGLTVSARVLSVNLDKRQMRLTLKKSLLNSDSAIWKDYNDIVPGK 637

Query: 454  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
             + G +  I+ +G  V+FY  V+ F P SE+      +PS  +  GQVV    +S   A+
Sbjct: 638  QSPGTLINIQPNGATVQFYGTVRAFLPVSEMSEAYIKDPSQHFRKGQVVNVHAISVDTAA 697

Query: 514  RRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
             ++ +S    P+  SE        ++ G LV+G V   + + +++ +   G +   +   
Sbjct: 698  EKLVVS-CKDPSTSSEAYREAFGEIRPGVLVTGTVFEKSSDDLLLKLDKYGVT-ARLSAI 755

Query: 569  HLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDAS 623
            HL D     A    + ++ G +   LLVL+ +  + L+  + K SL  + ++  LP+   
Sbjct: 756  HLVDGDAAKAASAFAKVRVGQKLSDLLVLEAKRVHRLIKVTHKSSLRKALKKNSLPATFE 815

Query: 624  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK-TYYVGQSVRSNI 682
             +   + + G+V  I   G FV FLG L G  PR + VD + A+      Y  QS+ + +
Sbjct: 816  ELEVGTEITGFVRGITSHGIFVEFLGGLNGLLPR-RLVDDEHANKPDFGLYRSQSLTATV 874

Query: 683  LDVNSETGRITLSLK--QSCCSSTDASFMQEHFLLEEKIAM-LQSSKHNGSELKWVEGFI 739
              ++ +  R TL+++  +    S      ++    +EK+A  +  S H  ++      F 
Sbjct: 875  HQIDEDNRRFTLTMRPLELPTGSRPEQSKEKPLPEDEKLANPVDESIHTAAD------FT 928

Query: 740  IGSVIEGKVHE----------SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAA 789
            IG V + ++            +++    +   E  D +  I   +          ++   
Sbjct: 929  IGKVTKARIASIKETQINVVLADNLQGRIDVSEVFDKWDDIKDRKQPLQKFRVKEILPVR 988

Query: 790  ILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIV 847
            IL +  A++ R + +S +T     +  +         + K    + + V  ++   V  V
Sbjct: 989  ILGLHDARSHRFLPISHRTSKHPVYELSAKPSFISSAEPKPLTLEQVKVGSSMIGFVNNV 1048

Query: 848  KENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL 905
              +YL +SL P     +    +S D +T    +  +  G ++   V  +      G L L
Sbjct: 1049 ANDYLWVSLSPNVRGRVRAIDLSDDLSTLADLESNYPVGSALKVRVTGI--DLDKGHLDL 1106

Query: 906  LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 965
             +K+ S  + S  K ++       G ++   +T++   ++ ++      G +++T++ DD
Sbjct: 1107 SVKSGSARDLSFDKLSR-------GMILPGRVTKVTEKQIIMQLSDTLVGAVNLTDMADD 1159

Query: 966  KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS-------EIGS 1018
             S +   +   +K  + + A II        KK F   LS++PS +  S       EI S
Sbjct: 1160 YSKIDTTI---YKKNEILRACIIDLDKS--KKKIF---LSLRPSKVLSSTLPVRDREITS 1211

Query: 1019 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1078
                +  DV     V G+V +V +    +T+  ++ A + I D     S L+E++  F  
Sbjct: 1212 MDQLKPNDV-----VRGFVRRVADNGLFVTLGHNVSAYIRISD--LSDSFLKEWKDEFQT 1264

Query: 1079 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI-----HEGDIVGGRI 1133
             + V G ++ ++ E   L++ L+            + + N +T I       G +V G++
Sbjct: 1265 DQLVKGRIILVDSENNRLQMSLKE----------SVLDPNFKTPITIRDLKVGQVVTGKV 1314

Query: 1134 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
             K+      +V+    ++ G  H +++    V            D    ++ G  VK K+
Sbjct: 1315 RKVEDFGAFIVIDGSANVSGLCHRSQMAEQNVQ-----------DARKLFEAGDIVKAKI 1363

Query: 1194 LEI-SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1233
            L+I +   + +F ++ S     +G  S   SD    +D  G
Sbjct: 1364 LKIDANQGKVSFGLKASYFGDEEGSDSEGGSDGDLSMDEAG 1404


>gi|449302185|gb|EMC98194.1| hypothetical protein BAUCODRAFT_32189 [Baudoinia compniacensis UAMH
            10762]
          Length = 1803

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 381/1386 (27%), Positives = 664/1386 (47%), Gaps = 180/1386 (12%)

Query: 493  SSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVD--VVT 547
            S ++ V  V K RI++  P      +S    ++    +  +DL K+G +V G V+  ++ 
Sbjct: 513  SGLFKVDSVHKARIIAFNPIDNLYYVSLKQSVLDQAYLRLEDL-KVGEVVKGTVERLILG 571

Query: 548  PNAVVVYVIAK--GYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNL 603
                +  V+ K      G +P  H +D  L+H    +   + G+    ++L +D E  ++
Sbjct: 572  GKTGITGVLVKLSATITGLVPETHFSDAQLQHP---ERKFREGFPVQARVLSVDLEKRHV 628

Query: 604  LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 663
             L+ K SLI+   ++  D + + P     G + N++ +G  V+F G +  + P ++  +G
Sbjct: 629  RLTFKKSLIDREVEVWQDYNILKPGMEGTGTIVNLLPSGAAVQFFGNVRAWLPVAEMSEG 688

Query: 664  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 723
                + + + +GQ+V   IL VN+ET  + +S KQS             F  E++ A   
Sbjct: 689  YIERVEQHFRLGQTVNVRILSVNAETQEMKVSCKQSGL-----------FDAEQQEA--- 734

Query: 724  SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA-GATVES 782
                      W E    G ++ G V      G  V+ E  + + G I H  LA GA  ++
Sbjct: 735  ----------W-EAVSGGQLVSGSVTVKG--GESVTVELQNGLLGLIRHGHLADGAPTKA 781

Query: 783  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 842
             S    A+  +   + L DL      +   RE +       K    +A+K   + ++   
Sbjct: 782  DS----ALSRIRVGQNLTDL-----LVLGKRERSRQVLLSNKPSLVKAAKAGTLIRSFAD 832

Query: 843  IVE-IVKENYLVLSLPE------YNHSIGYASVSDYNTQKFPQKQF--LNGQSVIATVMA 893
            + E  V + ++    PE       N  +G    S   T K  +  F  L  Q+V   V+ 
Sbjct: 833  VREGAVAQGFVRNVTPEGVYVDFTNGIVGLVPKSQVGTDKVGKPAFGLLKEQTVHTWVLN 892

Query: 894  LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV--GSLVQAEITEIKPLELRLKFGI 951
            + ++    R    L    +T+  +     + + +DV  G +V+  I  IK  +L ++   
Sbjct: 893  IDTA----RERFTLSMREQTDKPAVADRAQTAVHDVTKGQIVKVMIASIKATQLNVRLAN 948

Query: 952  GFHGRIHITEVNDDKSNVVEN--LFSNFKIGQTVTARIIAKSNKPDMK---------KSF 1000
            G  GRI ++EV D   ++  N      FK  + + A+++   +  + +         K+ 
Sbjct: 949  GVQGRIDVSEVFDSWDDISNNKAPLQKFKPNEELEAKVLGLHDARNHRFLPISHRQGKAP 1008

Query: 1001 LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1060
            ++ELS K S   +++   +LL  +  V     +  +V    +    + +S +++ ++ ++
Sbjct: 1009 VFELSAKRSR--INDQSEQLLGLDSIVPNASYLA-FVNNHGDNCVWVNLSPNVRGRIALM 1065

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
            D + +   LQ+ ++ F IG A+   V +I+     L L  R   +    K + + +    
Sbjct: 1066 DLSDDAGMLQKVEKSFPIGCALQVTVKAIDLVSGRLDLTAR---NSTEQKALTLQD---- 1118

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
              I  G ++ GR++K+      + VQ+   L G V   E+ +         Y+  Q + L
Sbjct: 1119 --ISPGMVLPGRVTKVTERA--ITVQLSDTLAGPVPLVEMSD--------NYE--QLNVL 1164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
              Y +   V+  VL I    +  F   LSLR S           LS+ +      +  + 
Sbjct: 1165 Q-YRKNDIVRVCVLGIDTPNKKLF---LSLRPS---------KVLSSSLPVKDPQIASVS 1211

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L P  +V+G+VK+V  +G  + LS +LDA V +S+LSD YV+  +    I +LV GRV 
Sbjct: 1212 QLKPGDLVRGFVKHVGDRGVIVSLSPQLDAFVRISDLSDQYVKDWKSLVEIDQLVKGRVT 1271

Query: 1301 SVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            +V+  +K V+++LK S  D        IN+L+    G IV G++++VE +G FI I+NT 
Sbjct: 1272 AVDSETKNVQLSLKASHVDEDYVPPISINDLA---AGTIVTGKVRKVEDFGAFIDIDNTQ 1328

Query: 1359 --LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADN 1415
              L GLCH SE++   V+++  +Y AG+ VK K+L VD E R+ISLG+K+SYF + DA++
Sbjct: 1329 PRLSGLCHRSEVAAKRVEDVRKLYSAGDVVKAKVLSVDLEARKISLGLKASYFADVDAND 1388

Query: 1416 LQMSSEEESDEAIEEVGSYNRSSL-LENSSVAVQDMDMESEDGGSLVLAQIESRASVPPL 1474
              +++++  DEA  +VG      + L N     +D D++ ++                  
Sbjct: 1389 PGVAADDVEDEAASDVGGVGIDDVQLGNGPYGEEDEDVDPDN----------------IA 1432

Query: 1475 EVNLDDEQPDMDNGISQNQ----------------------GHTDEAKTIDEKNNRHAKK 1512
            +V++ D + D  +G+  ++                      G        D +      K
Sbjct: 1433 DVDVHDGRTDGIDGMGFDEETVSKPTSGLKTLGFDWNGDAFGSATNGAMSDSEPETSVTK 1492

Query: 1513 KEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1572
            K K  +  EI+      L+K  PR+  +FER +   PN S +WI+YMAF L +++V++AR
Sbjct: 1493 KRKRNKP-EIKVDMTGDLDKYGPRSESDFERQLLGQPNYSGLWIQYMAFQLQLSEVQRAR 1551

Query: 1573 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1632
             IAERAL+TINIRE +EK NIW+A+ NLE EYG+  E  V +VF +A Q  D  ++H  L
Sbjct: 1552 DIAERALRTINIRETDEKANIWIAWLNLEVEYGD--EARVEEVFAQACQVQDSLEMHEKL 1609

Query: 1633 LGLYERTEQNKLADELLYKMI--KKFKHSCKVWLRRVQRLLKQQQEGV--QAVVQRALLS 1688
              +Y  + ++K AD +  +++  K F+ S +VWL     L+ + ++ V  +A++ RAL S
Sbjct: 1610 ASIYIDSGKHKRADNIFERIVAHKAFRASPEVWLNYATFLMDRSRDPVRARALLTRALQS 1669

Query: 1689 LPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE----IRL 1742
            +  ++H    ++ A LEF+  NG  +RGR++FEG+L+E+PK +  W +++D E     R+
Sbjct: 1670 IQMNEHRPLTAKFAGLEFRFLNGDPERGRTIFEGLLTEWPKWSSGWDMWVDLERSRLARV 1729

Query: 1743 GDVD-------LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
            G  D        +R L+ER  +     ++ +F+FK++LE+E+  G  +  E VK  A EY
Sbjct: 1730 GPQDERAEAREKVRALYERMAAQKTKKRRARFVFKQWLEFEEKEGNGKGAERVKALAKEY 1789

Query: 1796 VESTLA 1801
            VES  A
Sbjct: 1790 VESQQA 1795



 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 303/1320 (22%), Positives = 549/1320 (41%), Gaps = 151/1320 (11%)

Query: 2    KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE-----------ANEDNLLP 50
            ++ G V  +  +D+ + LP  L G      A+  IL+  IE            +ED  L 
Sbjct: 150  QVLGYVTAITARDIALALPNNLTGYV-PITAVSDILNARIERLLAEDERRADDDEDVDLK 208

Query: 51   TIFHVGQLVSCIVLQLDDDKK-EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
             +F+VGQ +   V  +  ++     KR I L++  S +  GL  ++V    +L A V+S+
Sbjct: 209  RLFYVGQWLRATVRSVGSEQAGSKSKRHIELAIAPSQVNGGLDGDSVVVNSMLQAAVRSV 268

Query: 110  EDHGYILHFGLPSFT--GFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDP 166
            EDHG ++  GL   T  GF+ + +L     +  ++ G ++  +V       KV+ LS D 
Sbjct: 269  EDHGVVMDLGLGDETVKGFVSKKDLGAGFKLGQLQEGQVMMCLVTGKSSNGKVLKLSPDA 328

Query: 167  DTVSK-CVTKDLKGIS----IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
               S     K+   +S    ++  +PG  VS  V      GV+   +     T D+ H  
Sbjct: 329  ARFSTHGAEKETPVVSEAPTVEAFLPGTAVSILVTDSGAGGVVGKVMGMVDVTADVMHSG 388

Query: 222  NTFPTTNWKNDYNQHKKVNARILFVDPTS---RAVGLTLNPYLLHNRAPPS--------- 269
                  +    Y    K+  RI++  P +   R VG++L  ++L    P S         
Sbjct: 389  AATKGADMSKKYKIGSKIYGRIVWTLPNADDGRRVGVSLLDHMLCLPPPTSRLPEAASAK 448

Query: 270  ----------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTP-VSTPAYVTISDVAEEEVRK 318
                      H+ +  I   +KVV +    G+ L++P+      PA+  IS V++  +  
Sbjct: 449  LRVQATQLEQHMPISAIIGDAKVVHLLSERGIFLELPTVAGQPAPAFAHISQVSDTRIDV 508

Query: 319  LEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 375
            L      +K  S  + RI+ F  ++ L    LK S  +       D+K G VVKG V  +
Sbjct: 509  LSSSSGLFKVDSVHKARIIAFNPIDNLYYVSLKQSVLDQAYLRLEDLKVGEVVKGTVERL 568

Query: 376  ------DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 427
                     G +V+    +  L P  H S+ ++  P +KF+ G  +  RVL V  + + +
Sbjct: 569  ILGGKTGITGVLVKLSATITGLVPETHFSDAQLQHPERKFREGFPVQARVLSVDLEKRHV 628

Query: 428  TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 487
             +T KK+L+  ++ +   Y      +   G I  +   G  V+F+  V+ + P +E+   
Sbjct: 629  RLTFKKSLIDREVEVWQDYNILKPGMEGTGTIVNLLPSGAAVQFFGNVRAWLPVAEMSEG 688

Query: 488  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLGSLVSGVV 543
                    + +GQ V  RI+S    ++ + +S        +E     + V  G LVSG V
Sbjct: 689  YIERVEQHFRLGQTVNVRILSVNAETQEMKVSCKQSGLFDAEQQEAWEAVSGGQLVSGSV 748

Query: 544  DVVTPNAVVVYVIAKGYSKGTIPTEHLADHL-EHATVMKSVIKPGYEFDQLLVLDN--ES 600
             V    +V V +  +    G I   HLAD     A    S I+ G     LLVL     S
Sbjct: 749  TVKGGESVTVEL--QNGLLGLIRHGHLADGAPTKADSALSRIRVGQNLTDLLVLGKRERS 806

Query: 601  SNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 658
              +LLS K SL+ +A+   L    + +   +V  G+V N+   G +V F   + G  P+S
Sbjct: 807  RQVLLSNKPSLVKAAKAGTLIRSFADVREGAVAQGFVRNVTPEGVYVDFTNGIVGLVPKS 866

Query: 659  KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE--HFLLE 716
            +    +    +      Q+V + +L++++   R TLS+++       A   Q   H + +
Sbjct: 867  QVGTDKVGKPAFGLLKEQTVHTWVLNIDTARERFTLSMREQTDKPAVADRAQTAVHDVTK 926

Query: 717  EKI--AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 774
             +I   M+ S K     ++   G      ++G++  S  F          D +  I++++
Sbjct: 927  GQIVKVMIASIKATQLNVRLANG------VQGRIDVSEVF----------DSWDDISNNK 970

Query: 775  LAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK 832
                  +    ++A +L +  A+  R + +S +      F  +     A++ +   ++ +
Sbjct: 971  APLQKFKPNEELEAKVLGLHDARNHRFLPISHRQGKAPVFELS-----AKRSRINDQSEQ 1025

Query: 833  DLGVHQTVN-----AIVEIVKENYLVLSL-PEYNHSIGYASVSDYNT--QKFPQKQFLNG 884
             LG+   V      A V    +N + ++L P     I    +SD     QK  +K F  G
Sbjct: 1026 LLGLDSIVPNASYLAFVNNHGDNCVWVNLSPNVRGRIALMDLSDDAGMLQKV-EKSFPIG 1084

Query: 885  QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLE 944
             ++  TV A+     +GRL L  +       S+ ++A        G ++   +T++    
Sbjct: 1085 CALQVTVKAI--DLVSGRLDLTAR------NSTEQKALTLQDISPGMVLPGRVTKVTERA 1136

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1004
            + ++      G + + E++D+   +  N+    K    +    +   + P+ KK F   L
Sbjct: 1137 ITVQLSDTLAGPVPLVEMSDNYEQL--NVLQYRK--NDIVRVCVLGIDTPN-KKLF---L 1188

Query: 1005 SIKPSMLTVSEIGSK--LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            S++PS +  S +  K   +     +  G  V G+V  V +   ++++S  L A  F+  S
Sbjct: 1189 SLRPSKVLSSSLPVKDPQIASVSQLKPGDLVRGFVKHVGDRGVIVSLSPQLDA--FVRIS 1246

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
                  +++++    I + V G V +++ E K ++L L+       D    IS +++   
Sbjct: 1247 DLSDQYVKDWKSLVEIDQLVKGRVTAVDSETKNVQLSLKASHVD-EDYVPPISINDLAA- 1304

Query: 1123 IHEGDIVGGRISKILS-GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
               G IV G++ K+   G    +    P L G  H +E+    V            D   
Sbjct: 1305 ---GTIVTGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAAKRVE-----------DVRK 1350

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
             Y  G  VK KVL +    R     ++SL     G+ ++  +D+  D + PG   + +ED
Sbjct: 1351 LYSAGDVVKAKVLSVDLEAR-----KISL-----GLKASYFADV--DANDPGVAADDVED 1398



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 102/462 (22%), Positives = 196/462 (42%), Gaps = 67/462 (14%)

Query: 958  HITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG 1017
            HI++V+D + +V+ +    FK+     ARIIA  N  D     L+ +S+K S+L      
Sbjct: 497  HISQVSDTRIDVLSSSSGLFKVDSVHKARIIA-FNPIDN----LYYVSLKQSVL------ 545

Query: 1018 SKLLFEECDVSIGQRVTGYVYK--VDNEWALLTISRHLKAQL--FILDSAYEPSELQEFQ 1073
             +      D+ +G+ V G V +  +  +  +  +   L A +   + ++ +  ++LQ  +
Sbjct: 546  DQAYLRLEDLKVGEVVKGTVERLILGGKTGITGVLVKLSATITGLVPETHFSDAQLQHPE 605

Query: 1074 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND-NMQTFIHEGDIVGGR 1132
            R+F  G  V   VLS++ EK+ +RL    F+  + D+ V++  D N+     EG    G 
Sbjct: 606  RKFREGFPVQARVLSVDLEKRHVRLT---FKKSLIDREVEVWQDYNILKPGMEGT---GT 659

Query: 1133 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG-YDEGQFVKC 1191
            I  +L    G  VQ     +G        N+    P++   EG  + +   +  GQ V  
Sbjct: 660  IVNLLP--SGAAVQ----FFG--------NVRAWLPVAEMSEGYIERVEQHFRLGQTVNV 705

Query: 1192 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1251
            ++L ++   +     E+ +     G+                +  E  E +S   +V G 
Sbjct: 706  RILSVNAETQ-----EMKVSCKQSGLFDA-------------EQQEAWEAVSGGQLVSGS 747

Query: 1252 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK-EFPIGKLVAGR------VLSVEP 1304
            V     +   + L   L   +   +L+DG   +P K +  + ++  G+      VL    
Sbjct: 748  VTVKGGESVTVELQNGLLGLIRHGHLADG---APTKADSALSRIRVGQNLTDLLVLGKRE 804

Query: 1305 LSKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
             S++V ++ K S  + A     I + +++  G +  G ++ V   G+++   N  +VGL 
Sbjct: 805  RSRQVLLSNKPSLVKAAKAGTLIRSFADVREGAVAQGFVRNVTPEGVYVDFTN-GIVGLV 863

Query: 1364 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              S++  D V          + V   +L +D  + R +L M+
Sbjct: 864  PKSQVGTDKVGKPAFGLLKEQTVHTWVLNIDTARERFTLSMR 905


>gi|440912389|gb|ELR61959.1| Protein RRP5-like protein, partial [Bos grunniens mutus]
          Length = 1304

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 370/1289 (28%), Positives = 606/1289 (47%), Gaps = 148/1289 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D   +  NE  A E+ L     LP +F
Sbjct: 87   MRILGCVKEVNELELVISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQDLVGLPELF 146

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  LD  K    K+ + LSL    + + LS ET++ GM+LT  V S+EDHG
Sbjct: 147  SPGMLVRCVVSSLDTTKGS--KKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVSSLEDHG 204

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +  +R VV LS     
Sbjct: 205  YLVDIGVSGARAFLPLQKAQEYIWQKNKGAKLKVGQYLNCLIEEVKGSRGVVTLSIGHSE 264

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L FL++F+G VD  HL      T 
Sbjct: 265  VSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDPKKAGTY 324

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     ++V A +L V P +RAV L+L P  L    P + +   ++G + D   V   
Sbjct: 325  FSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAVLDDVPVQGF 379

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    +      T AY   + ++  +     + +K G+  + RI+ +  ++ LA  
Sbjct: 380  FGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDYSQMDELALL 436

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D+KPG +VKGKV+ +   G +V+    ++ L P  H+++  I  P
Sbjct: 437  SLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNP 496

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ VG E+  RVL    K+K++ +T KKTLV+SKL  ++ Y +A   L THG+I +++
Sbjct: 497  EKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVK 556

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  PR EL  +   +P S+++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 557  DYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 616

Query: 523  -KPTRVSEDD------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
              P +  E         V  G LV   V   T + + V V+      G +PT HL+DH+ 
Sbjct: 617  SDPKQECEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIP-GFLPTAHLSDHVT 675

Query: 576  HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHG 633
            +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P   S IHP  ++ G
Sbjct: 676  NGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIHPGMLLIG 735

Query: 634  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            +V NI + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R+ 
Sbjct: 736  FVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRML 795

Query: 694  LSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVH 749
            LSL+ S C+  D +          LEE+  +     +  S L + +     G  ++ +V 
Sbjct: 796  LSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMALDLEVQ 855

Query: 750  ESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            E  + G V+ F E   V G +   + +  AG  +E G   +A IL+V   +  V +SL  
Sbjct: 856  EVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKLEVHVSLCH 913

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              +        NR+A+K K+  +          + AIV+ ++E++ V SL E  H   ++
Sbjct: 914  DLV--------NRKAKKLKKGSD----------LQAIVQHLEESFAVASLVETGHLAAFS 955

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK--- 922
              S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R     
Sbjct: 956  LTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVTG--LLLAVEGPAAKRTMRQTRKDSET 1013

Query: 923  ----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
                            KK +  +G +V   +  IKP  + +    G  G IH + + DD 
Sbjct: 1014 VDEDEEVDPALVIGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDD- 1072

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML--- 1011
              V  +  +  K+G+ VTAR+I      DMK   FL            ELS++PS L   
Sbjct: 1073 VPVGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSELKED 1129

Query: 1012 ---TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEP 1066
               T++      L +      GQ VT ++  Y +  +W  + I+  ++ ++ +L ++   
Sbjct: 1130 GHTTLNTHSVSPLEKIKQYQPGQTVTCFLKKYNMVKKWLEVEIAPDIRGRIPLLLTSLSF 1189

Query: 1067 SELQEFQRRFHIGKAVTGHVLSINKEKK--LLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
              L+   ++F IG+A+   V+   +  K  L   ++ P +                  + 
Sbjct: 1190 KVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHK------------------LK 1231

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            +G++  GR+ K+ +   GL V      +GRV    + +  VSD    Y E     L  + 
Sbjct: 1232 KGEVAMGRVVKV-TPKEGLTVSFP---FGRVGRVSMFH--VSD---SYSETH---LEDFV 1279

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSS 1213
              Q V+C VL  +  V     + LSLRSS
Sbjct: 1280 PQQIVRCYVLSAATPV-----LTLSLRSS 1303



 Score = 70.5 bits (171), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 452  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 511

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1357
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N 
Sbjct: 512  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 566

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            ++ GL    ELS ++V + E+++  G+ VKV +L  +  K R+ L  +
Sbjct: 567  DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 614



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 105/481 (21%), Positives = 193/481 (40%), Gaps = 67/481 (13%)

Query: 909  AISETETSSSKRAKKKS----SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
            +I  +E S++   +++S    S   G +V+A++ ++ PL L LKF   F G +    ++ 
Sbjct: 259  SIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDP 318

Query: 965  DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1024
             K+      FSN    Q V A ++         ++    LS++P  L      ++LL ++
Sbjct: 319  KKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPGRPLTRLLCQQ 366

Query: 1025 CDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1081
                +    V G+       + L   T++   +  L      ++P         F  G  
Sbjct: 367  LGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA-------FKPGNT 419

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
                ++  ++  +L  L LR     I +      +D     I  G +V G++  I     
Sbjct: 420  HKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKGKVLTIKPH-- 469

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
            G+VV++G  + G V    L +I + +P   Y  G        DE   VKC+VL      +
Sbjct: 470  GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVG--------DE---VKCRVLLCDPKAK 518

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
                + ++L+ +L              V++    +   +D  P +   G++  V   GC 
Sbjct: 519  ---KLMMTLKKTL--------------VESKLPAITCYDDAKPGLQTHGFILRVKDYGCI 561

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-TSDSRT 1320
            +     +   V    LS  YV  PE  F  G++V   VL+ EP  +R+ ++ +  SD + 
Sbjct: 562  VKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQ 621

Query: 1321 ASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
              + +       +  G +V  ++      GL + +   N+ G    + LS DHV N   +
Sbjct: 622  ECEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPTAHLS-DHVTNGPLL 680

Query: 1380 Y 1380
            Y
Sbjct: 681  Y 681



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 162/395 (41%), Gaps = 55/395 (13%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 456  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 511

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1045
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 512  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 560

Query: 1046 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1103
            ++     ++  +    L + Y P      +  F+ G+ V   VL+    K+ + L  R  
Sbjct: 561  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 616

Query: 1104 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELKN 1162
             D    +  +  +   +  +  G +V  ++  +     GL V + PH + G +    L +
Sbjct: 617  SD--PKQECEGQSQKKKKAVSAGQLVDVKV--LEKTKDGLKVAVLPHNIPGFLPTAHLSD 672

Query: 1163 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1222
               + PL       +  L   D    V C  L +S   R     + +L S+++G      
Sbjct: 673  HVTNGPL------LYHWLQTGDTLHRVLC--LSVSEE-RVLLCRKPALVSAVEG------ 717

Query: 1223 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1282
                      G++ +   ++ P M++ G+VKN+   G F+     L      + LSD +V
Sbjct: 718  ----------GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFV 767

Query: 1283 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
             S    F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 768  TSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 802



 Score = 45.1 bits (105), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             + S +H G ++IG +K ++ YG+F+    + L GL   + LS+  V +    +  G+ V
Sbjct: 722  KSFSEIHPGMLLIGFVKNIKDYGVFVQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTV 780

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 781  VAKVTNVDEEKQRMLLSLRLS 801


>gi|344274767|ref|XP_003409186.1| PREDICTED: protein RRP5 homolog [Loxodonta africana]
          Length = 1872

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 387/1398 (27%), Positives = 646/1398 (46%), Gaps = 161/1398 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EV++ +LVI LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 84   MRILGCVKEVSDLELVISLPNGLKGFVQVTEICDAYTKKLNEQVAQEEPLKDLVRLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  +   +K  GK+ + LSL    +   LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSVGITEK--GKKSVKLSLNPRNVNGVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  V+  +  +  VV LS     
Sbjct: 202  YLVDIGVSGNRAFLPLQKAQEDTRQKNKGAKLKVGQYLNCVIEEVKSSGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ ++FL+YFTG VD  HL+     T 
Sbjct: 262  VSTAIATEEQNWTLNNLLPGLVVKGQVQKVTPFGLTVNFLSYFTGLVDFMHLEPKKTGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRV 285
            + N     + V A ILF+ P +RAV L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILFIHPRTRAVRLSLRPVFLQPGRPLTRLSCQHLGAVLDDLPVHGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    +    +   AY   S ++  +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FNKAGATFKLKDGAL---AYARFSHLSNSKNVFKPEIFKPGNTHKCRIIDYSPMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E    ++ D KPG VVKG V+ +  +G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLSYHDTKPGAVVKGTVLTIKPYGMLVKVGEQIRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ VG E+  RVL    ++K++ +T KKTLV+S+L  ++ YA+A   L THG+I +++
Sbjct: 494  EKKYSVGDEVKCRVLVCDPEAKKLMMTLKKTLVESRLPAITCYADAKPGLQTHGFILRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
              GC V+FYN VQG  P+ EL  +    P ++++ GQV+K  +++  PA  R+ LSF + 
Sbjct: 554  DCGCIVKFYNDVQGLVPKHELSAEYIPAPETVFYPGQVMKVVVLNCEPAKERMLLSFKLL 613

Query: 523  -KPTRVSEDD--------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
              P    E +         V +G LV   V   T + + V V+      G +P  HL+DH
Sbjct: 614  SDPEAKKEREGGSQKKRRAVHVGQLVDVKVVEKTEDGLEVAVLPHSIP-GFLPIPHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L +E   +LL  K +L+++ +  Q P   S IHP  ++
Sbjct: 673  VPNGPLLYHWLQAGDTLHRVLCLQSE-GRVLLCRKPALVSAVEGGQDPKSFSEIHPGMLL 731

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 732  MGFVKSIKDYGVFVQFPSGLSGLAPKAAMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQR 791

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C+  D +      LL + +  LQ      S  +   ++ +     G +++ 
Sbjct: 792  MLLSLRLSDCTLGDVA-TTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMILDL 850

Query: 747  KVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +V E  + G VV       V G +   + +  AG  VESG   +A +L+V   +  V +S
Sbjct: 851  EVQEVLEDGSVVF--GGGPVPGLVLRASRYHRAGQEVESGQKKKAVVLNVDMLKLEVHVS 908

Query: 804  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 863
            L    +        NR+ +K K+  E            A V+ ++E++ + SL E     
Sbjct: 909  LCQDLV--------NRKHKKLKKGSE----------YQATVQHLEESFAIASLVETGQLA 950

Query: 864  GYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 922
             ++  S  N T +F  ++   GQ V   + A     T   L+L ++  +   T    R +
Sbjct: 951  AFSLTSHLNDTFRFDSEKLQVGQGVSLALKATQPGVTG--LILAVEGPAAKRTMRQTRKE 1008

Query: 923  -------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 963
                               KK +  +G +V   +  IK   + +    G  G IH + + 
Sbjct: 1009 SETVDEDEESDPALVVGTVKKHTLSIGDMVTGTVKSIKATHVVVTLEDGVIGCIHASNIL 1068

Query: 964  DDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPSML--- 1011
            DD   V  +  S  K+G+TVTAR+I     K+ K  P     F+    ELS++PS L   
Sbjct: 1069 DD-VPVGTSPTSKLKVGKTVTARVIGGRDVKTYKFLPISHPRFIRTIPELSVRPSELEKD 1127

Query: 1012 --TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEP 1066
              T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++   
Sbjct: 1128 GHTALNTHSVSPSEKIKQYQAGQTVTCFLKRYNVVKKWLEVEIAPDIRGRIPLLLTSLSF 1187

Query: 1067 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG 1126
              L+   ++F IG+A+   V+  +  K  L L L             I    ++    +G
Sbjct: 1188 KVLKHPDKKFRIGQALNATVVGPDSCKAFLCLSL-------------IGPHKLE----KG 1230

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            ++  GR+ K+     GL V      +GR          VSD    Y E    PL  +   
Sbjct: 1231 EVAMGRVVKVTPN-EGLTVSFPFGKFGRASI-----FHVSD---SYSE---TPLEDFVPQ 1278

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            + V+C VL  +  V     + LSLR      SS  + +  + ++ P   +  I+D+    
Sbjct: 1279 KIVRCCVLSTAGHV-----LTLSLR------SSRTNPETKSKIEDP--EINSIQDIEEGQ 1325

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVL 1300
            +++GYVK V   G    L   +   V L+  S     SP K+       P GKL+  ++L
Sbjct: 1326 LLRGYVKAVEPHGVLFSLGPSV---VGLARYSHVSQYSPSKKALYSRYLPEGKLLTAKIL 1382

Query: 1301 SVEPLSKRVEVTLKTSDS 1318
            S+      V ++   SD+
Sbjct: 1383 SLNHKRSLVRLSFLPSDT 1400



 Score =  280 bits (716), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 138/285 (48%), Positives = 202/285 (70%), Gaps = 4/285 (1%)

Query: 1516 EEREQEIRAAEERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1574
            ++ E+E+   EE L++ +  P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1583 QKAEKELSRIEEALMDPRRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1642

Query: 1575 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1634
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1643 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1700

Query: 1635 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1693
            +Y ++E+ + A EL  +M+K+F+    VW++    LL + Q G    V+QRAL  LP+ +
Sbjct: 1701 IYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGSFLLGRGQAGASHRVLQRALECLPQKE 1760

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753
            H+  I++ A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1761 HVDVIARFAQLEFQLGDKERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGTQKEVRDIFE 1820

Query: 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1821 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1865



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 6/167 (3%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            D  P  +V+G V  +   G  + +  ++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DTKPGAVVKGTVLTIKPYGMLVKVGEQIRGLVPPMHLADILMKNPEKKYSVGDEVKCRVL 508

Query: 1301 SVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
              +P +K++ +TLK +  +SR  +   I   ++   G    G I RV+  G  +   N +
Sbjct: 509  VCDPEAKKLMMTLKKTLVESRLPA---ITCYADAKPGLQTHGFILRVKDCGCIVKFYN-D 564

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + GL    ELS +++   ET++  G+ +KV +L  +  K R+ L  K
Sbjct: 565  VQGLVPKHELSAEYIPAPETVFYPGQVMKVVVLNCEPAKERMLLSFK 611



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 100/245 (40%), Gaps = 33/245 (13%)

Query: 871  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 930
            +   K P K+F  GQ++ ATV+  P S  A   L L+                    + G
Sbjct: 1187 FKVLKHPDKKFRIGQALNATVVG-PDSCKAFLCLSLIGP---------------HKLEKG 1230

Query: 931  SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
             +    + ++ P E L + F  G  GR  I  V+D  S   E    +F   + V   +++
Sbjct: 1231 EVAMGRVVKVTPNEGLTVSFPFGKFGRASIFHVSDSYS---ETPLEDFVPQKIVRCCVLS 1287

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1045
             +         +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V+    
Sbjct: 1288 TAG-------HVLTLSLRSSR-TNPETKSKIEDPEINSIQDIEEGQLLRGYVKAVEPHGV 1339

Query: 1046 LLTISRHLKA-QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1104
            L ++   +     +   S Y PS+   + R    GK +T  +LS+N ++ L+RL   P  
Sbjct: 1340 LFSLGPSVVGLARYSHVSQYSPSKKALYSRYLPEGKLLTAKILSLNHKRSLVRLSFLPSD 1399

Query: 1105 DGISD 1109
             G  D
Sbjct: 1400 TGKPD 1404



 Score = 44.3 bits (103), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             + S +H G +++G +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 720  KSFSEIHPGMLLMGFVKSIKDYGVFVQFP-SGLSGLAPKAAMSDKFVTSTSDHFVEGQTV 778

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 779  VAKVTNVDEEKQRMLLSLRLS 799



 Score = 41.2 bits (95), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 11/140 (7%)

Query: 1276 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS-----EINNLS 1330
            ++SD Y E+P ++F   K+V   VLS       + ++L++S +   ++S     EIN++ 
Sbjct: 1262 HVSDSYSETPLEDFVPQKIVRCCVLSTA--GHVLTLSLRSSRTNPETKSKIEDPEINSIQ 1319

Query: 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDHVDNIETIYRAGEKVK 1387
            ++  G ++ G +K VE +G+  ++   ++VGL    HVS+ S             G+ + 
Sbjct: 1320 DIEEGQLLRGYVKAVEPHGVLFSL-GPSVVGLARYSHVSQYSPSKKALYSRYLPEGKLLT 1378

Query: 1388 VKILKVDKEKRRISLGMKSS 1407
             KIL ++ ++  + L    S
Sbjct: 1379 AKILSLNHKRSLVRLSFLPS 1398


>gi|326471469|gb|EGD95478.1| rRNA biogenesis protein RRP5 [Trichophyton tonsurans CBS 112818]
          Length = 1827

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 382/1412 (27%), Positives = 658/1412 (46%), Gaps = 186/1412 (13%)

Query: 476  QGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 532
            QGF   S L        SSM   Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 508  QGFVHLSRLADGRVDSISSMEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 564

Query: 533  VKL-----GSLVSGVVD--VVTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSV 583
             +L     GS+V G ++  ++ P  +   +++      G +P  H+AD  L+H    +  
Sbjct: 565  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDNISGLVPEMHMADTKLQHP---EKK 621

Query: 584  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 622  FREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 681

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 682  AIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLVVSCKDPSTV 741

Query: 703  STD--ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
            + D  ++F + H                            G V+ G V E +   +++  
Sbjct: 742  TADYQSAFEKVH---------------------------PGLVVSGTVFEKSSDDLLIKL 774

Query: 761  EEHSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFID 810
            ++   +    ++H   G++ +  S               +  V K+ RL++++ K     
Sbjct: 775  QDSGLIARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKVKKSHRLIEVTNKATL-- 832

Query: 811  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVS 869
                    ++A  + R     +D+     V  +V+ I+ E   V  L      I    V 
Sbjct: 833  --------KKAAAEGRLPAKFEDIKHGLKVTGVVKNIIPEGIFVEFLDNLTGLIPKRLVD 884

Query: 870  DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYD 928
            D +  + P   +   Q + ATV A+   S   R LL LK +S+  E S S  A +K +  
Sbjct: 885  DDHASR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVSKPKEQSDSNPASEKKAPA 941

Query: 929  V------------------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV 970
            V                  G + +A+IT +K  +L +       GRI I+E+ D   ++ 
Sbjct: 942  VVLNNPIDEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIK 1001

Query: 971  ENL--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSK 1019
            +      +F     +  R++   +  + K         K  ++ELS K S L  SE    
Sbjct: 1002 DRKRPLKSFHSKDILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEF-KP 1060

Query: 1020 LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIG 1079
            L  E+  + +G R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG
Sbjct: 1061 LHLEQ--LKVGDRHIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIG 1118

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1139
             A+   V+ I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI   
Sbjct: 1119 SALQVAVIGIDAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR 1169

Query: 1140 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1199
               ++VQI  ++ G +   ++ +          D  + +P + + + + ++  V+++   
Sbjct: 1170 --QVLVQINDNVVGAISLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIP 1216

Query: 1200 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1259
             +    +  S+R S           LS+ +      +  I++L    IV+G+++ V + G
Sbjct: 1217 NK---KISFSVRPS---------KVLSSSLPVVDPEITSIDNLKVGQIVRGFIRRVDNIG 1264

Query: 1260 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1319
             F+ L   + A + +S+LSD +++  + EF + +LV GR+  V+  + ++++TLK S   
Sbjct: 1265 VFVTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLD 1324

Query: 1320 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIET 1378
               +     L  L VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   
Sbjct: 1325 PNYKPPFT-LKELKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQ 1383

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE--AIEEVGSYNR 1436
            +Y   + VK K+LKVD EK +I+LG+K+SYF++         EEESD   + +E G    
Sbjct: 1384 LYEKDDIVKAKVLKVDLEKGQIALGLKASYFRD-------LPEEESDANCSDDEAGGI-- 1434

Query: 1437 SSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN---- 1492
              +L+    +  D+ M   D       + E            +        G+  +    
Sbjct: 1435 --MLDAGGDSDDDVSMGGVDLEGEDDEEGEEEEDSDEDIEMENAPDSTKKGGLVTSGFDW 1492

Query: 1493 --QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1550
               G  D+ +  DE        K K+ R+ EI+      L+ + P++  ++ERL+   P+
Sbjct: 1493 TGDGDKDQNEAADESAEDDGATKRKKRRKAEIQVDRTGDLDANGPQSVADYERLLLGEPD 1552

Query: 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610
            SS +W+KYMAF L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++
Sbjct: 1553 SSLLWLKYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DD 1610

Query: 1611 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1670
             + +VF+ A +Y D  +++  +  ++ ++ + + ADEL    +KK   S   +       
Sbjct: 1611 TLDEVFKSACEYNDAHEIYDRMTSIFIQSGKAEKADELFQTALKKKVSSTPDFFLNYANF 1670

Query: 1671 LKQQQEGVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEY 1725
            L    E  Q    ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +
Sbjct: 1671 LFDTMEAPQRGRDLLHRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSF 1730

Query: 1726 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLF 1769
            PKR DLW++ LD EI++GD + +R LFER + +                 L  K+ KFLF
Sbjct: 1731 PKRIDLWNVLLDLEIKVGDEEQVRRLFERVLGIGHGIVAADGTKGGPKKKLKEKQAKFLF 1790

Query: 1770 KKYLEYEKSV---GEEERIEYVKQKAMEYVES 1798
            KK+L +E+ +   G+ + ++ VK +A +YV S
Sbjct: 1791 KKWLAFEEKIAPEGDTKMVDEVKARAADYVRS 1822



 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 289/1212 (23%), Positives = 513/1212 (42%), Gaps = 115/1212 (9%)

Query: 49   LPTIFHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
            L     VGQ +   V      +DDKK   K+ I LS+       GL+   +     + A 
Sbjct: 238  LKNYVKVGQYLRAAVTATTRNEDDKKVKNKKHIELSIEPHAANSGLTKADMVVNATVQAS 297

Query: 106  VKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVV 160
            V S+EDHG ++  GL      GF+    L   +GID   VK G +   +V   + +  V+
Sbjct: 298  VISVEDHGLVMDLGLEENEAKGFISSRELP--AGIDISTVKEGSVFLCIVTGQNASGTVI 355

Query: 161  YLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 218
             LS+D  + +            +I+  +PG      +  +   G++   +      VD+ 
Sbjct: 356  KLSADLSSAASVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVI 415

Query: 219  HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAV--GLTLNPYLLHNRAPPSHVKVGD- 275
            H   +    +    Y+   K+  R++   P+S  V  G ++   +L      + V  GD 
Sbjct: 416  HSGASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGGDD 475

Query: 276  -------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKE 325
                   I  + KV  VD  LGL + + ST      +V +S +A+   + +  +E  YK 
Sbjct: 476  DLPLISDIIPEVKVTYVDTSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSMEGPYKV 533

Query: 326  GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GA 380
            GS    RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I  +   G 
Sbjct: 534  GSTHEGRIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGL 593

Query: 381  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS 438
            IV     +  L P  HM++ ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ S
Sbjct: 594  IVSLTDNISGLVPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQLRLTLKKSLLNS 653

Query: 439  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
              A    Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + V
Sbjct: 654  DSAPWKDYESISAGSRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTV 713

Query: 499  GQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVV 553
            GQVV    ++    + R+ +S    P+ V+ D     + V  G +VSG V   + + +++
Sbjct: 714  GQVVNVHALTVDAENERLVVS-CKDPSTVTADYQSAFEKVHPGLVVSGTVFEKSSDDLLI 772

Query: 554  YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYS 610
             +   G     + + H++D      T   + I+ G + D LLV   + S+ L+  + K +
Sbjct: 773  KLQDSGLI-ARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKVKKSHRLIEVTNKAT 831

Query: 611  LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
            L  +A +  LP+    I     V G V NII  G FV FL  LTG  P+    D   +  
Sbjct: 832  LKKAAAEGRLPAKFEDIKHGLKVTGVVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHASRP 891

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAMLQ 723
               Y   Q + + +  V  ++ R  LSLK     +    S  AS        E+K   + 
Sbjct: 892  DFGYSRFQVISATVCAVQEDSDRFLLSLKPVSKPKEQSDSNPAS--------EKKAPAVV 943

Query: 724  SSKHNGSELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHH 773
             +     ELK +E  ++G + + K+    D    VV        +   E  D +  I   
Sbjct: 944  LNNPIDEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDR 1003

Query: 774  QLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 831
            +    +  S  ++   +L +  A+  + + +S ++  +  +  +      Q  + K    
Sbjct: 1004 KRPLKSFHSKDILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEFKPLHL 1063

Query: 832  KDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIA 889
            + L V       V  + E+ L L++ P     +    +S D + +   QK F  G ++  
Sbjct: 1064 EQLKVGDRHIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQV 1123

Query: 890  TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF 949
             V+ + +     RL L  +  S  +T +     K      G ++   +T+I   ++ ++ 
Sbjct: 1124 AVIGIDAEKN--RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLVQI 1175

Query: 950  GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPS 1009
                 G I + ++ DD + V     +NF   + +   ++   + P+ K SF    S++PS
Sbjct: 1176 NDNVVGAISLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKISF----SVRPS 1227

Query: 1010 MLTVSEIG--SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             +  S +      +    ++ +GQ V G++ +VDN    +T+   + A  +I  S    S
Sbjct: 1228 KVLSSSLPVVDPEITSIDNLKVGQIVRGFIRRVDNIGVFVTLGHDVTA--YIRVSDLSDS 1285

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE-- 1125
             L+E++  F + + V G +  ++KE   +++ L+        K+V   N      + E  
Sbjct: 1286 FLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLK--------KSVLDPNYKPPFTLKELK 1337

Query: 1126 -GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
             G IV G++ K+      + +    +L G  H +E+    V D        Q      Y+
Sbjct: 1338 VGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT------QL-----YE 1386

Query: 1185 EGQFVKCKVLEI 1196
            +   VK KVL++
Sbjct: 1387 KDDIVKAKVLKV 1398


>gi|164425200|ref|XP_962876.2| hypothetical protein NCU06272 [Neurospora crassa OR74A]
 gi|157070830|gb|EAA33640.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1774

 Score =  398 bits (1023), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 386/1404 (27%), Positives = 669/1404 (47%), Gaps = 195/1404 (13%)

Query: 474  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTR 526
            GV GF   S +    +D   E S  Y VG V   R++  ++      I+L  S + +P  
Sbjct: 465  GVSGFVHISRVKDGKVDALFENSGPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFL 524

Query: 527  VSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 581
              ED  + +G++VSGVV+ +  NA     ++  IA G S G +P  H AD HL++    +
Sbjct: 525  RIED--IPVGAVVSGVVEKMVVNAAGVGGLIVKIADGIS-GLVPEMHFADVHLQNP---E 578

Query: 582  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNI 638
               + G +   ++L  D  S  + L+ K +L+NS   LP+  S+  I       G + N+
Sbjct: 579  KKFREGLKVKARVLSTDAASRQIRLTLKKTLVNS--DLPAIQSYEQIAVGQQALGTIINV 636

Query: 639  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            ++ G  V+F GRL GF P S+  +    D  + + VGQ+V   ++  + +  ++ +S K 
Sbjct: 637  LQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKD 696

Query: 699  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 758
                          F LE+++A+ +                IG V+  KV +  D  V V
Sbjct: 697  PSA-----------FGLEKQLALKK--------------LQIGDVVSAKVTQKTDDDVFV 731

Query: 759  SFEEHSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLKTVF 808
               + S        H    +  ++ S ++            IL+  +A R + LS K   
Sbjct: 732  ELADSSLKAILPVAHLTDKSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPSL 791

Query: 809  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYAS 867
            +   +E          +   E S   G  + + A    V+    L   LP+        S
Sbjct: 792  VKASKEGKFLTTLDGARVGDEVS---GYIRNITATAVFVQFGGKLTALLPK--------S 840

Query: 868  VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE----TETSSSKRA-- 921
            +     Q  P       QSV   + ++  ++   RL++ +   +E     ET   K A  
Sbjct: 841  MIPREDQDKPDFGMFKSQSVTVKITSV--NTELNRLVVAIPGAAEQVKKVETKGEKVANP 898

Query: 922  --KKKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLF 974
              +  ++ D   +G L +A I  +K  +L ++      GRI +++V D    +   +   
Sbjct: 899  VDESITTLDDISIGKLTKARIVSVKDTQLNVQLADNIQGRIDVSQVYDSWEQIKDTKKPL 958

Query: 975  SNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECD 1026
              F+  Q V  R++    A++++  P   +S   + ELS KPS +        L F+  +
Sbjct: 959  KRFQPNQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEPLSFD--N 1016

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
            + +G    G+V  V      + +S  ++ ++  ++++ + S L    + F IG A+   V
Sbjct: 1017 LKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVRV 1076

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1146
            +S++ E K L L  R    G  D   +++ D     I +  I+ G+I+K+      ++V+
Sbjct: 1077 VSVDAESKRLDLSAR--SPGSED---ELTWDK----IAQDVILVGKITKVDER--QVIVK 1125

Query: 1147 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1206
            +   L G VH  +L        +  Y+E   +P + + + + V+  V+E+ ++ +    +
Sbjct: 1126 LSESLAGPVHKVDL--------VDDYEEA--NP-AKFAKNEIVRVAVVEVDKSNK---RI 1171

Query: 1207 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1266
             LS R S           L++ +    K + +   L    IV+G+VKNV+ KG F+ L  
Sbjct: 1172 RLSTRPS---------RILNSSLPVKDKEITQNTKLEVGEIVRGFVKNVSDKGLFVTLGG 1222

Query: 1267 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1326
             + A V + NLSD Y++  +++F + +LV GR++SV   + R+E++LK S         +
Sbjct: 1223 TVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISVA--NGRIEMSLKPS-VVDKDYVPL 1279

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEK 1385
              +S+L  G  + G++++VE +G FI I+ + NL GLCH SE+S+  V +   +Y  G+K
Sbjct: 1280 TTISDLKEGQTITGRVRKVEEFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDK 1339

Query: 1386 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE----------------EESDEAIE 1429
            VK K+LKVD   +RI+LG+K SYF    D  +M  +                 ++D+A++
Sbjct: 1340 VKAKVLKVDITAKRINLGLKPSYFGEQDDEDEMDVDEEDAEDSEGDDSDEDMSDADDAVQ 1399

Query: 1430 EVGSYN----RSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM 1485
              G+ N         E S V + D D++  + G                     D    +
Sbjct: 1400 ITGTDNVEDESEDEDEASDVEMVDADVKGLEAGGF-------------------DWSASL 1440

Query: 1486 DNGISQNQGHTD-EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERL 1544
            ++G   N    D EA            KK+K  RE ++   +   L+ D P+T  ++ERL
Sbjct: 1441 EDGEKANASAADLEA----------LAKKKKARREPQVTVDKTASLDVDGPQTASDYERL 1490

Query: 1545 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1604
            +   PNSS +WI YMAF + ++D+  AR +AERA++TINI+EE EKLN+W+AY NLE  Y
Sbjct: 1491 LLGQPNSSQLWIAYMAFQMQVSDLAAARQVAERAIKTINIKEEIEKLNVWIAYLNLEVAY 1550

Query: 1605 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVW 1663
            GN  EE V +VF+RA  Y D ++VH  L  +Y ++ + K AD+L  K++K+F + S +VW
Sbjct: 1551 GN--EETVDEVFKRACTYNDKQEVHERLASIYIQSGKRKQADDLFEKIVKEFGYKSPEVW 1608

Query: 1664 LRRVQRL--LKQQQEGVQAVVQRA--LLSLPRHKHIKFISQTAILEFK--NGVADRGRSM 1717
            +     L       +  +A+++RA  +L    H ++  + + A LEF+  NG  ++GR++
Sbjct: 1609 VNYAHFLHTTAHSPDRARALLKRATQVLGKETHMYLALLPKFAALEFRSPNGDKEQGRTL 1668

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLE 1774
            FE +L+ YPK+ DLW+  +D E    D D  +IR LF+R   +  L P++ K  F+++ +
Sbjct: 1669 FENLLATYPKKFDLWNQLIDLETSAADADKGVIRDLFDRGSKVKGLKPRQAKAWFRRWAQ 1728

Query: 1775 YEKSVGEEERIEYVKQKAMEYVES 1798
            +E+  G+++  E V  KA E+  +
Sbjct: 1729 WEEKNGDKKSRERVSAKAQEWART 1752



 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 197/737 (26%), Positives = 336/737 (45%), Gaps = 66/737 (8%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLA-------------RAADALDPILDNEIEANEDNLLPT 51
           G V  +N  D+ + LP  + G                A+   D   ++E E + D  L +
Sbjct: 163 GSVCAINSLDIAVALPNNIIGHVPITAISAPLTKRLEASAGNDNAEESEDENDNDVDLES 222

Query: 52  IFHVGQLVSCIVLQLDDDKKE----IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
           +F +GQ V   V+   D+         KR I LSL+ SL   G++ + V     + A + 
Sbjct: 223 LFQIGQYVRAYVVSTVDEASTHTPGKAKRHIELSLQPSLANTGMAEQDVVVNSTVMAAIA 282

Query: 108 SIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSS 164
           S+EDHGY++   +      GFL R  + ++   + ++PG +L  +V + +   KVV LS+
Sbjct: 283 SVEDHGYVMDIEIADSKLQGFLARKQVDKSIPQEALQPGAVLLCIV-TKNAKGKVVQLST 341

Query: 165 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
             +T+           +ID  +PG      V  +  +G++   +     T D+ H     
Sbjct: 342 LGETMGNVENVPSTATTIDTFLPGTAADVLVSEVSSHGIVGKIMGSLDVTADLVHSGAGP 401

Query: 225 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR 284
              + ++ Y    ++ AR++   PT++      +P L  +  P S      I ++  V +
Sbjct: 402 DGIDLEDTYKVGSRLKARVICNFPTAK------HPKLGISALPHST-----IVEKCTVKQ 450

Query: 285 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEG 341
           V+  +GL +D+    VS   +V IS V + +V  L      YK GS    R++G+   +G
Sbjct: 451 VEPEIGLYVDVGVEGVS--GFVHISRVKDGKVDALFENSGPYKVGSVHAGRVVGYNAFDG 508

Query: 342 LATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPH 396
           +    L+ S  E       D+  G VV G V  + V++ G    IV+   G+  L P  H
Sbjct: 509 MYLISLEKSVLEQPFLRIEDIPVGAVVSGVVEKMVVNAAGVGGLIVKIADGISGLVPEMH 568

Query: 397 MSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 454
            ++  +  P KKF+ G ++  RVL     S++I +T KKTLV S L  + SY +      
Sbjct: 569 FADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLTLKKTLVNSDLPAIQSYEQIAVGQQ 628

Query: 455 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 514
             G I  + +HG  V+FY  ++GF P SE+      +P   + VGQ V   ++S  P + 
Sbjct: 629 ALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISFDPDAA 688

Query: 515 RINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
           ++ +S         E  L    +++G +VS  V   T + V V  +A    K  +P  HL
Sbjct: 689 KLIVSCKDPSAFGLEKQLALKKLQIGDVVSAKVTQKTDDDVFVE-LADSSLKAILPVAHL 747

Query: 571 ADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAKYSLINSAQQ----LPSD 621
            D  +  +  +S +K         +L++L+ NE+  +++LS K SL+ ++++       D
Sbjct: 748 TD--KSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPSLVKASKEGKFLTTLD 805

Query: 622 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS--KAVDGQRADLSKTYYVGQSVR 679
            + +     V GY+ NI  T  FV+F G+LT   P+S     D  + D     +  QSV 
Sbjct: 806 GARV--GDEVSGYIRNITATAVFVQFGGKLTALLPKSMIPREDQDKPDFG--MFKSQSVT 861

Query: 680 SNILDVNSETGRITLSL 696
             I  VN+E  R+ +++
Sbjct: 862 VKITSVNTELNRLVVAI 878



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 4/163 (2%)

Query: 365  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
            G +V+G V  V   G  V   G V A   + ++S+  +    ++F+V   +  R++ V +
Sbjct: 1201 GEIVRGFVKNVSDKGLFVTLGGTVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISVAN 1260

Query: 425  KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGVQGFAPRS 482
             RI ++ K ++V      L++ ++  +     G + K+E+ G F+       + G   RS
Sbjct: 1261 GRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVRKVEEFGAFIDIDGSANLSGLCHRS 1320

Query: 483  ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
            E+      +   +Y  G  VK +++     ++RINL   +KP+
Sbjct: 1321 EMSDKTVKDARKLYEEGDKVKAKVLKVDITAKRINLG--LKPS 1361


>gi|367027696|ref|XP_003663132.1| hypothetical protein MYCTH_2304622 [Myceliophthora thermophila ATCC
            42464]
 gi|347010401|gb|AEO57887.1| hypothetical protein MYCTH_2304622 [Myceliophthora thermophila ATCC
            42464]
          Length = 1818

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 405/1529 (26%), Positives = 710/1529 (46%), Gaps = 201/1529 (13%)

Query: 354  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG----VKALCPLPHMSEFEIVKPGKKF 409
            G V  H DV   +V  G     D    + Q+  G     + +C  P+          K  
Sbjct: 381  GKVMGHLDVTADLVHSG--AGPDGVDIVNQYKVGSRLKARIICTFPN---------AKLP 429

Query: 410  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 469
            K+G  L+  V+ +K K      ++ L  + LA  +   E T R +  G        G +V
Sbjct: 430  KLGISLLPHVVSLKPKIANKDGQELLPTAILAHSAIVNECTVRKVEPGI-------GLYV 482

Query: 470  RF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF----M 521
                 GV GF   S +    +D   E S  Y VG V   R++          LSF    +
Sbjct: 483  DVGVEGVPGFVHISRVKDGKVDTLFENSGPYKVGSVHPGRVVGYNNFDGMFLLSFEKKVL 542

Query: 522  MKPTRVSEDDLVKLGSLVSGVVDVVTPN----AVVVYVIAKGYSKGTIPTEHLAD-HLEH 576
             +P    ED  + +G++V GVV+ +  N      ++  IA+G S G +P  HLAD HL+H
Sbjct: 543  EQPFLRIED--IPIGAVVPGVVEKLVINQDGLGGLIVNIAQGIS-GLVPEMHLADVHLQH 599

Query: 577  ATVMKSVIKPGYEFDQLLVLDNESSN-LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 635
                +   + G +    ++  N + + L L+ K +L+NS          +       G +
Sbjct: 600  P---EKKFREGMKVKARVLSTNPAMHQLRLTLKKTLVNSEAPAIKSYDELAVGLQAPGTI 656

Query: 636  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
             N+++ G  V+F G+L GF P S+  +   +D  + + VGQ+V   +L  + ET R+ +S
Sbjct: 657  VNVLQHGAIVQFYGQLRGFLPVSEMSEAYISDPKEHFRVGQTVSIYVLSFDPETRRLIVS 716

Query: 696  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 755
             K               F LE+++A+ +                IG ++  KV +  +  
Sbjct: 717  CKDPSA-----------FGLEKQLALKK--------------LQIGDLVSAKVTQKTEDD 751

Query: 756  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLK 805
            V V   + S        H    +  ++ S ++            +L+  +A R + LS K
Sbjct: 752  VFVELTDSSLKAILPVGHLTDKSVSKTQSALKKIHVNQTLSDLVVLEKNEARRSIILSHK 811

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
               +          QA K+ +   +  D  +  TV   V  +      +       ++  
Sbjct: 812  PSLV----------QASKEGKLLRSVDDARLGDTVAGFVRNITATAAFVQFAGNLTALLP 861

Query: 866  ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET-SSSKRAKKK 924
             +    + Q          QS+   + ++      GRLL+ + ++S+ E   SSK A + 
Sbjct: 862  KTKLPKDAQDKLNFGLFKSQSLAVKITSI--DRDLGRLLVAIPSVSDEEARKSSKPADRA 919

Query: 925  --------SSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 973
                    SS D   +G + +A +  +K  +L ++      GRI ++++ D   ++ ++ 
Sbjct: 920  VNALDDSVSSMDDLKIGKITKARVKSVKETQLNVQIADNVQGRIDVSQIFDKWEDIPDSR 979

Query: 974  --FSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFE 1023
                 FK    + AR++    A++++  P   +S   + ELS KPS L    +   L  +
Sbjct: 980  RPLKRFKQNDILEARVLGIHDARNHRFLPITHRSSHSVLELSAKPSDLKPDTLPEPLSLD 1039

Query: 1024 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1083
            +  +  G     +V  V + +  + +S +++ ++  ++++ + S+L   ++ F +G A+ 
Sbjct: 1040 K--IEPGSSYIAFVNNVASSYLWVNLSPNVRGRISAMEASDDLSKLANLEKSFPVGSALQ 1097

Query: 1084 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1143
              VLS++KEK+ + L  R        +   +S D +Q    +G ++  +++KI      +
Sbjct: 1098 VRVLSVDKEKQRVDLSAR-----APGEAAQLSWDKIQ----QGLVLPAKVTKINDR--QV 1146

Query: 1144 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1203
            VV++   + G VH  +L +         YDE   +PLS + + + V+  V+E+ ++ +  
Sbjct: 1147 VVKLSELVAGPVHLADLAD--------DYDEA--NPLS-HSKNEIVRVAVVEVDKSNK-- 1193

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
              + LS+R S           L++ +    K + K   L    I++G+VKNV+ KG F+ 
Sbjct: 1194 -RLRLSMRPS---------RVLNSSLPVKDKEITKSTKLEVGDIIRGFVKNVSDKGLFVS 1243

Query: 1264 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1323
            L   + A V + NLSD Y++  ++ F + +LV GR++SV     R+E+ LK S       
Sbjct: 1244 LGGDVVAHVKIKNLSDAYLKDWKEHFQVDQLVKGRIISVA--DGRIEMDLKPSVVEQDYV 1301

Query: 1324 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRA 1382
              I  +++L  G IV G++++VE +G F+ I+ + NL GLCH SE+++ +V +  T+Y  
Sbjct: 1302 PPIT-IADLREGQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDARTLYNE 1360

Query: 1383 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLEN 1442
            G++VK ++LKVD EK+R++LG+K SYFK+D  +      EE D      G        E+
Sbjct: 1361 GDRVKARVLKVDLEKKRVNLGLKPSYFKDDEVDDMDVDSEEEDAGAALNGE-------ED 1413

Query: 1443 SSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTD-EAKT 1501
            S       D E  D G  +L            E + D+ + D++ G +  +G T  EA  
Sbjct: 1414 SG------DEEMSDAGGAILVGGSDDDDDEEDEEDDDEGKSDVEMGEAPEEGLTGLEAGG 1467

Query: 1502 IDEKNNRHAK-------------KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSS 1548
             D   +                 KK K+ RE +    +   L+ + P+T  ++ERL+   
Sbjct: 1468 FDWTADALDADEDAKAGPADEPIKKTKKRREPQGIVDKTAELDINGPQTSSDYERLLLGQ 1527

Query: 1549 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1608
            P+SS +WI YMA  + + D+  AR +AERAL+TINI+EE EKLN+W+AY NLE  YG   
Sbjct: 1528 PDSSELWIAYMASQMQINDLASARQVAERALKTINIKEETEKLNVWIAYLNLEVAYGT-- 1585

Query: 1609 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL-YKMIKKF-KHSCKVWLRR 1666
            EE V +VF+RA  Y D +++H  L  +Y ++ ++K A+ L   +++KK+   S  VW+  
Sbjct: 1586 EETVEEVFKRACTYNDDQEIHERLASIYIQSGKHKEAERLFEERILKKYGSRSPHVWINY 1645

Query: 1667 VQRLLKQ--QQEGVQAVVQRALLSL---------PRHKHIKFISQTAILEFKNGVADR-- 1713
               L  +  Q E  +A+ +RA   L         P   ++  + + A LEF++   DR  
Sbjct: 1646 AHFLHTKANQPERARALCKRATQILCNPANVHTNPSQVYLTLLPKFAALEFRSPSGDREQ 1705

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIR-----LGDVDLIRGLFERAISL-SLPPKKMKF 1767
            GR++FE +L+ YP++ DLW+   D E       + DV ++R LFER   +  L P++ K 
Sbjct: 1706 GRTLFEQLLATYPRKFDLWNQLADLETSSFRDGVDDVGVVRDLFERGSKVKGLKPRQAKA 1765

Query: 1768 LFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
             F+++ ++E+  G+ +  E V  KA E+ 
Sbjct: 1766 WFRRWAKWEEEKGDAKSRERVSAKAQEWA 1794



 Score =  220 bits (560), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 295/1226 (24%), Positives = 518/1226 (42%), Gaps = 176/1226 (14%)

Query: 45   EDNLLPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 103
            +D  L  +F++GQ V   V   LD+      KR I LSL  +    G+S + + E   L 
Sbjct: 217  DDVDLNGLFYIGQYVRAYVTSTLDESTPGKSKRHIGLSLEPAHANTGMSEQDLVENSTLM 276

Query: 104  AYVKSIEDHGYILHFGLPS--FTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVV 160
            A V SIEDHG++++ G+      GFLPR  L ++    +++PG +L  +V     + KVV
Sbjct: 277  ASVASIEDHGFVMNIGIADSDVKGFLPRKQLDKSIPPENLQPGSVLLCIVTGRAASGKVV 336

Query: 161  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 220
             LS+  D +        +  +I   +PG      V  + ++GV+   + +   T D+ H 
Sbjct: 337  QLSTLSDRLGNPKHNPAEATTIGSFLPGAAADVLVSEVSQHGVIGKVMGHLDVTADLVHS 396

Query: 221  QNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRA-----------P 267
                   +  N Y    ++ ARI+   P ++   +G++L P+++  +            P
Sbjct: 397  GAGPDGVDIVNQYKVGSRLKARIICTFPNAKLPKLGISLLPHVVSLKPKIANKDGQELLP 456

Query: 268  PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYK 324
             + +    I ++  V +V+ G+GL +D+    V  P +V IS V + +V  L      YK
Sbjct: 457  TAILAHSAIVNECTVRKVEPGIGLYVDVGVEGV--PGFVHISRVKDGKVDTLFENSGPYK 514

Query: 325  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSFGA 380
             GS    R++G+ + +G+     +    E       D+  G VV G V    I  D  G 
Sbjct: 515  VGSVHPGRVVGYNNFDGMFLLSFEKKVLEQPFLRIEDIPIGAVVPGVVEKLVINQDGLGG 574

Query: 381  -IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVK 437
             IV    G+  L P  H+++  +  P KKF+ G ++  RVL       ++ +T KKTLV 
Sbjct: 575  LIVNIAQGISGLVPEMHLADVHLQHPEKKFREGMKVKARVLSTNPAMHQLRLTLKKTLVN 634

Query: 438  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 497
            S+   + SY E    L   G I  + +HG  V+FY  ++GF P SE+      +P   + 
Sbjct: 635  SEAPAIKSYDELAVGLQAPGTIVNVLQHGAIVQFYGQLRGFLPVSEMSEAYISDPKEHFR 694

Query: 498  VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVV 553
            VGQ V   ++S  P +RR+ +S         E  L    +++G LVS  V   T + V V
Sbjct: 695  VGQTVSIYVLSFDPETRRLIVSCKDPSAFGLEKQLALKKLQIGDLVSAKVTQKTEDDVFV 754

Query: 554  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAK 608
             +      K  +P  HL D  +  +  +S +K          L+VL+ NE+  +++LS K
Sbjct: 755  ELTDSSL-KAILPVGHLTD--KSVSKTQSALKKIHVNQTLSDLVVLEKNEARRSIILSHK 811

Query: 609  YSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 666
             SL+ ++++  L            V G+V NI  T  FV+F G LT   P++K     + 
Sbjct: 812  PSLVQASKEGKLLRSVDDARLGDTVAGFVRNITATAAFVQFAGNLTALLPKTKLPKDAQD 871

Query: 667  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 726
             L+   +  QS+   I  ++ + GR+ +++     S +D    +     +  +  L  S 
Sbjct: 872  KLNFGLFKSQSLAVKITSIDRDLGRLLVAIP----SVSDEEARKSSKPADRAVNALDDSV 927

Query: 727  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 786
             +  +LK      IG + + +V    +  + V   +  +V G I   Q+           
Sbjct: 928  SSMDDLK------IGKITKARVKSVKETQLNVQIAD--NVQGRIDVSQI----------- 968

Query: 787  QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKRE--ASKDLGVHQTVN-AI 843
                                   D++ +   +R+  K+ ++ +   ++ LG+H   N   
Sbjct: 969  ----------------------FDKWEDIPDSRRPLKRFKQNDILEARVLGIHDARNHRF 1006

Query: 844  VEIV-KENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN----GQSVIATVMALPSSS 898
            + I  + ++ VL L         A  SD      P+   L+    G S IA V  + SS 
Sbjct: 1007 LPITHRSSHSVLEL--------SAKPSDLKPDTLPEPLSLDKIEPGSSYIAFVNNVASSY 1058

Query: 899  TAGRLLLLLKA-ISETETSS--SKRAKKKSSYDVGSLVQAEI------------------ 937
                L   ++  IS  E S   SK A  + S+ VGS +Q  +                  
Sbjct: 1059 LWVNLSPNVRGRISAMEASDDLSKLANLEKSFPVGSALQVRVLSVDKEKQRVDLSARAPG 1118

Query: 938  --------------------TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 977
                                T+I   ++ +K      G +H+ ++ DD      N  S+ 
Sbjct: 1119 EAAQLSWDKIQQGLVLPAKVTKINDRQVVVKLSELVAGPVHLADLADDYDEA--NPLSHS 1176

Query: 978  KIGQTVTARI-IAKSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVT 1034
            K      A + + KSNK          LS++PS +  S   +  K + +   + +G  + 
Sbjct: 1177 KNEIVRVAVVEVDKSNK-------RLRLSMRPSRVLNSSLPVKDKEITKSTKLEVGDIIR 1229

Query: 1035 GYVYKVDNEWALLTISRHLKAQLFI--LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1092
            G+V  V ++   +++   + A + I  L  AY    L++++  F + + V G ++S+   
Sbjct: 1230 GFVKNVSDKGLFVSLGGDVVAHVKIKNLSDAY----LKDWKEHFQVDQLVKGRIISVADG 1285

Query: 1093 KKLLRLVLRPF---QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
            +  + + L+P    QD +   T+          + EG IV G++ K+      + +    
Sbjct: 1286 R--IEMDLKPSVVEQDYVPPITI--------ADLREGQIVTGKVRKVEEFGAFVDIDGSM 1335

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEG 1175
            +L G  H +E+ +  V D  + Y+EG
Sbjct: 1336 NLSGLCHRSEMADRNVKDARTLYNEG 1361



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 172/811 (21%), Positives = 304/811 (37%), Gaps = 170/811 (20%)

Query: 53   FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLY---KGLSLETVQEGMVLTAYVKSI 109
            F VGQ VS  VL  D +      R++ +S +    +   K L+L+ +Q G +++A V   
Sbjct: 693  FRVGQTVSIYVLSFDPET-----RRLIVSCKDPSAFGLEKQLALKKLQIGDLVSAKVTQK 747

Query: 110  EDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVY 161
             +    +     S    LP  +L + S    +  L        L   VV   +  R+ + 
Sbjct: 748  TEDDVFVELTDSSLKAILPVGHLTDKSVSKTQSALKKIHVNQTLSDLVVLEKNEARRSII 807

Query: 162  LSSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 220
            LS  P  V    +K+ K + S+D    G  V+  V++I      + F    T        
Sbjct: 808  LSHKPSLVQ--ASKEGKLLRSVDDARLGDTVAGFVRNITATAAFVQFAGNLTAL------ 859

Query: 221  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 280
                P T    D     K+N  +      S+++ +                         
Sbjct: 860  ---LPKTKLPKD--AQDKLNFGLF----KSQSLAV------------------------- 885

Query: 281  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 340
            K+  +DR LG LL            V I  V++EE RK  K                   
Sbjct: 886  KITSIDRDLGRLL------------VAIPSVSDEEARKSSKPADRA-------------- 919

Query: 341  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SE 399
                     +A +  V +  D+K G + K +V +V      VQ    V+    +  +  +
Sbjct: 920  --------VNALDDSVSSMDDLKIGKITKARVKSVKETQLNVQIADNVQGRIDVSQIFDK 971

Query: 400  FEIV----KPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATD 451
            +E +    +P K+FK    L  RVLG+   R    + +TH+ +    +L+   S  +  D
Sbjct: 972  WEDIPDSRRPLKRFKQNDILEARVLGIHDARNHRFLPITHRSSHSVLELSAKPSDLKP-D 1030

Query: 452  RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---------------Y 496
             L     + KIE    ++ F N V        L  +     S+M               +
Sbjct: 1031 TLPEPLSLDKIEPGSSYIAFVNNVASSYLWVNLSPNVRGRISAMEASDDLSKLANLEKSF 1090

Query: 497  HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLGSLVSGVVDVVTPNAVVVY 554
             VG  ++ R++S     +R++LS    P   ++   D ++ G ++   V  +    VVV 
Sbjct: 1091 PVGSALQVRVLSVDKEKQRVDLS-ARAPGEAAQLSWDKIQQGLVLPAKVTKINDRQVVVK 1149

Query: 555  VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-L 611
            +     S+      HLAD  +       +     E  ++ V++ + SN  L LS + S +
Sbjct: 1150 L-----SELVAGPVHLADLADDYDEANPLSHSKNEIVRVAVVEVDKSNKRLRLSMRPSRV 1204

Query: 612  INSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 665
            +NS+  LP      + ++ +    ++ G+V N+ + G FV   G +          D   
Sbjct: 1205 LNSS--LPVKDKEITKSTKLEVGDIIRGFVKNVSDKGLFVSLGGDVVAHVKIKNLSDAYL 1262

Query: 666  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 725
             D  + + V Q V+  I+ V    GRI + LK S         +++ ++    IA L+  
Sbjct: 1263 KDWKEHFQVDQLVKGRIISVAD--GRIEMDLKPSV--------VEQDYVPPITIADLRE- 1311

Query: 726  KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES--- 782
                           G ++ GKV +  +FG  V  +   ++ G     ++A   V+    
Sbjct: 1312 ---------------GQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDART 1356

Query: 783  ----GSVIQAAILDVAKAERLVDLSLKTVFI 809
                G  ++A +L V   ++ V+L LK  + 
Sbjct: 1357 LYNEGDRVKARVLKVDLEKKRVNLGLKPSYF 1387



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 171/379 (45%), Gaps = 40/379 (10%)

Query: 82   LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL----PRNNLAENSG 137
            L+   L + LSL+ ++ G    A+V ++    Y+     P+  G +      ++L++ + 
Sbjct: 1027 LKPDTLPEPLSLDKIEPGSSYIAFVNNVA-SSYLWVNLSPNVRGRISAMEASDDLSKLAN 1085

Query: 138  ID--VKPGLLLQGVVRSIDRTRKVVYLSS-DPDTVSKCVTKDLKGISIDLLVPGMMVSTR 194
            ++     G  LQ  V S+D+ ++ V LS+  P   ++        +S D +  G+++  +
Sbjct: 1086 LEKSFPVGSALQVRVLSVDKEKQRVDLSARAPGEAAQ--------LSWDKIQQGLVLPAK 1137

Query: 195  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 254
            V  I +  V++       G V +  L + +   N  + +++++ V   ++ VD +++ + 
Sbjct: 1138 VTKINDRQVVVKLSELVAGPVHLADLADDYDEANPLS-HSKNEIVRVAVVEVDKSNKRLR 1196

Query: 255  LTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 305
            L++ P  + N + P         + ++VGDI      V+     GL + +    V   A+
Sbjct: 1197 LSMRPSRVLNSSLPVKDKEITKSTKLEVGDII--RGFVKNVSDKGLFVSLGGDVV---AH 1251

Query: 306  VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDV 362
            V I ++++  ++  ++ ++    V+ RI+     +G     LK S  E       T +D+
Sbjct: 1252 VKIKNLSDAYLKDWKEHFQVDQLVKGRIISV--ADGRIEMDLKPSVVEQDYVPPITIADL 1309

Query: 363  KPGMVVKGKVIAVDSFGAIVQFPGGVK--ALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
            + G +V GKV  V+ FGA V   G +    LC    M++  +      +  G  +  RVL
Sbjct: 1310 REGQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDARTLYNEGDRVKARVL 1369

Query: 421  GV--KSKRITVTHKKTLVK 437
             V  + KR+ +  K +  K
Sbjct: 1370 KVDLEKKRVNLGLKPSYFK 1388


>gi|327305835|ref|XP_003237609.1| rRNA biogenesis protein RRP5 [Trichophyton rubrum CBS 118892]
 gi|326460607|gb|EGD86060.1| rRNA biogenesis protein RRP5 [Trichophyton rubrum CBS 118892]
          Length = 1823

 Score =  395 bits (1015), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 362/1348 (26%), Positives = 643/1348 (47%), Gaps = 176/1348 (13%)

Query: 533  VKLGSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIKPGY 588
            V +GS+V G ++  ++ P  +   +++   S  G +P  H+AD  L+H    +   + G 
Sbjct: 565  VTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMADTKLQHP---EKKFREGL 621

Query: 589  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
            +   ++L +D +   L L+ K SL+NS      D   I   +   G +  I   G  V+F
Sbjct: 622  KVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGNRSPGTLIKIQNNGAIVQF 681

Query: 648  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
             G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     + D  
Sbjct: 682  YGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLIVSCKDPSTVTAD-- 739

Query: 708  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 767
              Q  F   EK+                     G V+ G V E +   +++  ++   + 
Sbjct: 740  -YQSAF---EKVHP-------------------GLVVSGTVFEKSSDDLLIKLQDSGLIA 776

Query: 768  GFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRFREANS 817
               + H   G++ +  S +             +  V K+ RL++++ K            
Sbjct: 777  RITSDHISDGSSAKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATL--------- 827

Query: 818  NRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKF 876
             ++A  + R     +D+     V  IV+ I+ E   V  L      I    V D +  + 
Sbjct: 828  -KEAAAEGRLPANFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHASR- 885

Query: 877  PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS------ETETSSSKRA--------- 921
            P   +   Q + ATV A+   S   R LL L+ +S      ++ ++S K+A         
Sbjct: 886  PDFGYSRFQVISATVCAVQEDSD--RFLLSLRPVSKPKQQSDSNSASEKKAPAVVLNNPV 943

Query: 922  ----KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FS 975
                K      VG + +A+IT +K  +L +       GRI I+E+ D   ++ +      
Sbjct: 944  DEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLK 1003

Query: 976  NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1026
            +F   + +  R++   +  + K         K  ++ELS K S L   E    L  E+  
Sbjct: 1004 SFHSKEILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQAGEF-KPLHLEQ-- 1060

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
            +  G +  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A+   V
Sbjct: 1061 LKAGDQYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAV 1120

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1146
              I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI      ++VQ
Sbjct: 1121 TGIDAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR--QVLVQ 1169

Query: 1147 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1206
            I  ++ G +   ++ +          D  + +P + + + + ++  V+++    +    +
Sbjct: 1170 INDNVVGAISLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK---KI 1215

Query: 1207 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1266
              S+R S           LS+ +      +  I++L    IV+G+++ V + G F+ L  
Sbjct: 1216 SFSVRPS---------KVLSSSLPVVDPEITSIDNLKIGQIVRGFIRRVDNIGVFVTLGH 1266

Query: 1267 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1326
             + A + +S+LSD +++  + EF + +LV GR+  V+  + ++++TLK S +   +    
Sbjct: 1267 DVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKIQMTLKKS-ALDPNYKPP 1325

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEK 1385
              L +L VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y   + 
Sbjct: 1326 FTLKDLKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDI 1385

Query: 1386 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV 1445
            VK K+LKVD EK +I+LG+K+SYF++  D      E E++ + +E G     + +++   
Sbjct: 1386 VKAKVLKVDLEKGQIALGLKASYFRDLPDE----DESEANASDDEAGGIKLDAGVDSD-- 1439

Query: 1446 AVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN-----------QG 1494
               D+ M     G + L   +        + + D E  +  + I +             G
Sbjct: 1440 --DDVSM-----GGVDLEGEDDEEEEEEEDSDEDTEMENASDSIKKGGLVTSGFDWTGDG 1492

Query: 1495 HTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFV 1554
              D+ +  DE        K K+ R+ EI+      L+ + P++  ++ERL+   P+SS +
Sbjct: 1493 DKDKYEAADESAEDDGATKRKKRRKAEIQIDRTGDLDANGPQSVADYERLLLGEPDSSLL 1552

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W+KYMAF L + +V+KAR IA+RAL+T++I ++ EKLNIW+A  NLEN +GN  ++ + +
Sbjct: 1553 WLKYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNIWIARLNLENTFGN--DDTLDE 1610

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1674
            VF+ A +Y D  +++  +  ++ ++ + + ADEL    +KK   S   +       L   
Sbjct: 1611 VFKSACEYNDAHEIYDRMTSIFIQSGKTEKADELFQTALKKKVSSTPDFFLNYANFLFDT 1670

Query: 1675 QEGVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRT 1729
             E  Q    ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR 
Sbjct: 1671 MEAPQRGRDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSFPKRI 1730

Query: 1730 DLWSIYLDQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLFKKYL 1773
            DLW++ LD EI++GD + +R LFER + +                 L  K+ KFLFKK+L
Sbjct: 1731 DLWNVLLDLEIKVGDEEQVRRLFERVLGIGHGVVAADGTKGGPKKKLKEKQAKFLFKKWL 1790

Query: 1774 EYEKSV---GEEERIEYVKQKAMEYVES 1798
             +E+ +   G+ + ++ VK +A +YV S
Sbjct: 1791 AFEEKIAPEGDTKMVDEVKARAADYVRS 1818



 Score =  206 bits (525), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 300/1273 (23%), Positives = 540/1273 (42%), Gaps = 130/1273 (10%)

Query: 2    KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA--------------NEDN 47
            ++ G V+ +   D+ + LP  L G     +A+   L  ++EA              ++D 
Sbjct: 173  RILGQVSSIGLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEEDEDDDDL 231

Query: 48   LLPTIFHVGQLVSCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 104
             L +   VGQ +   V   ++ +DD+K   K+ I LS+       GL+   +     + A
Sbjct: 232  DLKSYVKVGQYLRAAVTATIRNEDDRKVKNKKHIELSIEPHAANSGLTKADMVVNATVQA 291

Query: 105  YVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKV 159
             V S+EDHG ++  GL      GF+    L   +G+D   VK G +   +V   + +  V
Sbjct: 292  SVISVEDHGLVMDLGLEENEAKGFISSRELP--AGVDISTVKEGSVFLCIVTGQNASGTV 349

Query: 160  VYLSSD---PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
            + LS+D   P +V K    +    +I+  +PG      +  +   G++   +      VD
Sbjct: 350  IKLSADLASPGSVKKAHFLNT-APTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVD 408

Query: 217  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN----------PYLLHNRA 266
            + H   +    +    Y+   K+  R++   P+S  V L  +             L N A
Sbjct: 409  VIHSGASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGA 468

Query: 267  PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKY 323
                  + DI  + KV  VD  LGL + + ST      +V +S +A+   + +  +E  Y
Sbjct: 469  GDDLPSISDIIPEVKVTYVDSSLGLYVQLGST--KHQGFVHLSRIADGRVDSISSIEGPY 526

Query: 324  KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF- 378
            K GS    RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I  +   
Sbjct: 527  KVGSTHEGRIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGIN 586

Query: 379  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 436
            G IV     +  L P  HM++ ++  P KKF+ G ++  RVL V  + +++ +T KK+L+
Sbjct: 587  GLIVSLTDSISGLVPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLKKSLL 646

Query: 437  KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 496
             S  A    Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  +
Sbjct: 647  NSDSAPWKDYESISAGNRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHF 706

Query: 497  HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAV 551
             VGQVV    ++    + R+ +S    P+ V+ D     + V  G +VSG V   + + +
Sbjct: 707  TVGQVVNVHALTVDAENERLIVS-CKDPSTVTADYQSAFEKVHPGLVVSGTVFEKSSDDL 765

Query: 552  VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAK 608
            ++ +   G     I ++H++D      T   + I+ G + D LLV   + S+ L+  + K
Sbjct: 766  LIKLQDSGLI-ARITSDHISDGSSAKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNK 824

Query: 609  YSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 666
             +L  +A +  LP++   I     V G V NII  G FV FL  LTG  P+    D   +
Sbjct: 825  ATLKEAAAEGRLPANFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHAS 884

Query: 667  DLSKTYYVGQSVRSNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAM 721
                 Y   Q + + +  V  ++ R  LSL+     +    S  AS        E+K   
Sbjct: 885  RPDFGYSRFQVISATVCAVQEDSDRFLLSLRPVSKPKQQSDSNSAS--------EKKAPA 936

Query: 722  LQSSKHNGSELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYGFIT 771
            +  +     ELK +E  ++G + + K+    D    VV        +   E  D +  I 
Sbjct: 937  VVLNNPVDEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIK 996

Query: 772  HHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKRE 829
              +    +  S  ++   +L +  A+  + + +S ++  +  +  +      Q  + K  
Sbjct: 997  DRKRPLKSFHSKEILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQAGEFKPL 1056

Query: 830  ASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSV 887
              + L         V  + E+ L L++ P     +    +S D + +   QK F  G ++
Sbjct: 1057 HLEQLKAGDQYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSAL 1116

Query: 888  IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL 947
               V  + +     RL L  +  S  +T +     K      G ++   +T+I   ++ +
Sbjct: 1117 QVAVTGIDAEKN--RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLV 1168

Query: 948  KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIK 1007
            +      G I + ++ DD + V     +NF   + +   ++   + P+ K SF    S++
Sbjct: 1169 QINDNVVGAISLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKISF----SVR 1220

Query: 1008 PSMLTVSEIG--SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE 1065
            PS +  S +      +    ++ IGQ V G++ +VDN    +T+   + A  +I  S   
Sbjct: 1221 PSKVLSSSLPVVDPEITSIDNLKIGQIVRGFIRRVDNIGVFVTLGHDVTA--YIRVSDLS 1278

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--I 1123
             S L+E++  F + + V G +  ++K+   +++ L+          +D +     T   +
Sbjct: 1279 DSFLKEWKDEFQVDQLVQGRLTVVDKDNNKIQMTLKK-------SALDPNYKPPFTLKDL 1331

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
              G IV G++ K+      + +    +L G  H +E+    V D        Q      Y
Sbjct: 1332 KVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT------QL-----Y 1380

Query: 1184 DEGQFVKCKVLEI 1196
            ++   VK KVL++
Sbjct: 1381 EKDDIVKAKVLKV 1393


>gi|355783073|gb|EHH64994.1| hypothetical protein EGM_18331 [Macaca fascicularis]
          Length = 1873

 Score =  395 bits (1014), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 382/1399 (27%), Positives = 644/1399 (46%), Gaps = 161/1399 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLS--SDP 166
            Y++  G+     FLP     E     N G  +K G  L  ++  +     VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIIEKVKGNGGVVSLSVGHSE 261

Query: 167  DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 226
            +T S  +   +  I  D +   +     +  +   G+ L+FLT+FTG VD  HL      
Sbjct: 262  ETASAGIVLPVSFIGRDNVALSVYCEQCLTFVTPFGLTLNFLTFFTGVVDFMHLDPKKAG 321

Query: 227  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVV 283
            T + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V 
Sbjct: 322  TYFSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQ 376

Query: 284  RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 343
               +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA
Sbjct: 377  GFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELA 433

Query: 344  TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 403
               L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  + 
Sbjct: 434  LLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLADILMK 493

Query: 404  KPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 461
             P KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG+I +
Sbjct: 494  NPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHGFIIR 553

Query: 462  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
            ++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF 
Sbjct: 554  VKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK 613

Query: 522  M--------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 571
            +        +P   S+     + +G LV   V   T + + V V+     +  +PT HL+
Sbjct: 614  LSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLS 672

Query: 572  DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNS 629
            DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S IHP  
Sbjct: 673  DHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGM 732

Query: 630  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
            ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E 
Sbjct: 733  LLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEK 792

Query: 690  GRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIGSVIE 745
             R+ LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G  ++
Sbjct: 793  QRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLD 852

Query: 746  GKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 804
              V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL
Sbjct: 853  LVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSL 912

Query: 805  KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIG 864
                +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   
Sbjct: 913  HQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAA 954

Query: 865  YASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK- 922
            ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R   
Sbjct: 955  FSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPTRKDS 1012

Query: 923  ------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
                              KK +  +G +V   +  IKP  + +    G  G IH + + D
Sbjct: 1013 ETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILD 1072

Query: 965  DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML- 1011
            D    +    +  K+G+TVTAR+I      DMK   FL            ELS++PS L 
Sbjct: 1073 DVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRPSELE 1128

Query: 1012 ---TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYE 1065
               T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++  
Sbjct: 1129 DGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLS 1188

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1125
               L+   ++F +G+A+   V+  +  K  L L L             I    ++    E
Sbjct: 1189 FKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE----E 1231

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            G++  GR+ K+     GL V      +G++    +    VSD    Y E    PL  +  
Sbjct: 1232 GEVAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI--FHVSD---SYSE---TPLEDFVP 1279

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
             + V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D+   
Sbjct: 1280 QKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEG 1326

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRV 1299
             +++GYV ++   G F  L   +   V L+  S     SP K+       P GKL+  RV
Sbjct: 1327 QLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKLLTARV 1383

Query: 1300 LSVEPLSKRVEVTLKTSDS 1318
            L +      VE++    D+
Sbjct: 1384 LRLNHQKNLVELSFLPGDT 1402



 Score =  291 bits (745), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1554
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1564 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1623

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1624 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1681

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1674
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1682 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRG 1741

Query: 1675 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
            Q G    ++QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1742 QAGASHRMLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1801

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1802 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1861

Query: 1794 EYVES 1798
            EYVE+
Sbjct: 1862 EYVEA 1866



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 57/337 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 327  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 386

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 387  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 423

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 424  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 463

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 464  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 523

Query: 1314 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 524  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 578

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 579  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 615



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 189/469 (40%), Gaps = 58/469 (12%)

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1002
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 386  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 433

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 434  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 487

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 488  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 545

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 546  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 588

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            Y  GQ VK  VL          + E S    L  +S   SSD     +  G   +K + +
Sbjct: 589  YT-GQVVKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAI 635

Query: 1243 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1299
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 636  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 694

Query: 1300 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            L +      V +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 695  LCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 753

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 754  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 802



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1199 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1250

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1251 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1306

Query: 1323 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1307 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPS 1364

Query: 1376 IETIYRA----GEKVKVKILKVDKEKRRISL 1402
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1365 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1395


>gi|401626228|gb|EJS44184.1| rrp5p [Saccharomyces arboricola H-6]
          Length = 1726

 Score =  394 bits (1013), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 377/1305 (28%), Positives = 619/1305 (47%), Gaps = 181/1305 (13%)

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 614
            I  G  K  +P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 533  IFNGQFKANVPALHISD--TRLVYPERKFKIGSKVKGRILSVNLRGNVHMTLKKSLVNIE 590

Query: 615  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
            A + P       A  I   N      V      GC + F G L+GF P S+  +      
Sbjct: 591  ADESPLVSNYESAKEIKEKNEKTLATVQVFKPNGCVISFFGGLSGFLPNSEISEVFVKKP 650

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
             +   +GQ+V   +LDV+++  RI      + C  ++    Q+   +E  +         
Sbjct: 651  EEHLRLGQTVVVKLLDVDADRRRII-----ATCKVSNEQAAQQKDTIENIVP-------- 697

Query: 729  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------ 782
            G  L      I  SVIE K  ES    V+V      ++ G I    L+ A +E       
Sbjct: 698  GRTL------ITVSVIE-KTKES----VIVEIP-GVNLRGVIYAGHLSDARIEQNRAQLK 745

Query: 783  ----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 838
                G+ +   ++D     R+ +++LK+  I   ++A            +   KD+ +H 
Sbjct: 746  KIRIGAELTGLVIDKDTRTRVFNMTLKSSLI---KDAKKKTLPLTYDDVKNIKKDVPMHA 802

Query: 839  TVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 893
             + +I +    V  N  ++ L LP Y  ++    + D N      K F   QSV  TV  
Sbjct: 803  YIKSISDKGLFVAFNGKFIGLVLPSY--AVDSRDI-DIN------KTFYINQSV--TVYL 851

Query: 894  LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD----------VGSLVQAEITEIKPL 943
            L +     + LL LKA    E      +  +S  D          +GS+V+A+I  +K  
Sbjct: 852  LRTDDQNQKFLLSLKAPKVKEEKKQVESNIESPIDSSIKTWDDISIGSVVKAKIKSVKKN 911

Query: 944  ELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK---- 993
            +L +      HGR+ I EV D    + +     S++K    +  +II     KS+K    
Sbjct: 912  QLNVILAANLHGRVDIAEVFDTYEEIKDKKQPLSHYKKDDVIQVKIIGNHDVKSHKFLPI 971

Query: 994  -PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1052
               + K+ + ELS+KP  L   E  +K L E   + +G+ +TG+V         LTIS  
Sbjct: 972  THRISKASILELSMKPLELKSKETHTKTLEE---IKVGEELTGFVNNSSGNHLWLTISPV 1028

Query: 1053 LKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1111
            LKA++ +LD     +   E  +  F +G A+   V S++ E          F + I    
Sbjct: 1029 LKARISLLDLTENDTRFSENVESVFPLGSALQVKVASVDHE--------HGFINAIGKTH 1080

Query: 1112 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE-LKNICVSDPLS 1170
            VD+   +M T I   D + GR+  +      +++ +G  + G    T+ L +  +S    
Sbjct: 1081 VDV---DMST-IKVADELPGRVLNVAEKY--VLLDLGNKVTGISFITDALDDFSIS---- 1130

Query: 1171 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1230
               E   D ++       +   VL ++   +    +ELSLRS+     S NS +      
Sbjct: 1131 -LKEAFQDKINN-----VIPTTVLAVNAENK---KIELSLRSATPKSRSINSHN------ 1175

Query: 1231 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1290
                      D+    IV G +KNV  KG F+ LS+K++A V ++ LSD Y++  +K + 
Sbjct: 1176 ----------DVKQGDIVDGIIKNVNDKGIFVYLSKKVEAFVPVTKLSDSYLKEWKKFYK 1225

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
              + V G+V++    S R+ +TL+ S+        + + S++  GDI  G +K V  +G+
Sbjct: 1226 PMQYVVGKVVTCSEDS-RISLTLRESEV-NGDLKVLKSYSDIKAGDIFDGTVKNVTDFGV 1283

Query: 1351 FITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
            F+ ++NT N  GL HV+E+++   +++  ++  G++VK  +LK + EK++ISL +K+S+F
Sbjct: 1284 FVKLDNTVNATGLAHVTEIADKKPEDLSVLFGVGDRVKAIVLKTNPEKKQISLSLKASHF 1343

Query: 1410 KNDADNLQMSSE---EESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIE 1466
               A+    + +   E+ DE + +V  +N S   +N+S A +D D++  D          
Sbjct: 1344 SKGAETTSTTDQAEKEDEDEIMADV-DFNDS---DNASDA-EDQDIKVTD---------- 1388

Query: 1467 SRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEK-----------NNRHAKKKEK 1515
             +A +P              +G+S + G    A  +D+            N    KK + 
Sbjct: 1389 KKAEIPS-------------DGLSLSAGFDWTASILDQAQEEEESEEDQENFTENKKHKH 1435

Query: 1516 EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIA 1575
            + R+++I   +   +   AP +  +FERL+  +PNSS +W+ YMAF L ++++EKAR +A
Sbjct: 1436 KRRKEKIVQDKTIDINTRAPESVADFERLIIGNPNSSVLWMNYMAFQLQLSEIEKARELA 1495

Query: 1576 ERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1635
            ERAL+TIN REE EKLNIW+A  NLEN +G   EE +  VF RA QY D   +H  LLG+
Sbjct: 1496 ERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEDVFYRACQYMDSYIIHTKLLGI 1553

Query: 1636 YERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHK 1693
            YE + +   A EL     KKF      +W+     L+   +E   + ++  AL SLP+  
Sbjct: 1554 YEISAKLDKAAELFKTTAKKFGSEKPSIWVSWGDFLISHNEEQEARTILSNALKSLPKRS 1613

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753
            HI+ + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D   +  LFE
Sbjct: 1614 HIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFE 1673

Query: 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            R I+  +  K+ KF F K+LE+E+S  +E+ +EYVK KA EYV S
Sbjct: 1674 RIITKKITRKQAKFFFNKWLEFEQSQSDEKAVEYVKAKATEYVTS 1718



 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 283/1257 (22%), Positives = 532/1257 (42%), Gaps = 174/1257 (13%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---------------------- 37
            L G ++ + ++DL I    G+ G   L   +D    IL                      
Sbjct: 125  LLGQISGITKQDLCITFTDGISGYVNLTHISDVFTSILEDLDEDMDSDAETADKTKSKGD 184

Query: 38   DNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLR 83
            D E E+++D        N LP +   FH+GQ + C V++   L+   K+  K++I L++ 
Sbjct: 185  DTEYESSDDEDEKNDKSNDLPNLKKYFHIGQWLRCSVIKNTFLEPATKKTKKKRIELTIE 244

Query: 84   LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 143
             S +    S E + +   +   +KSIEDHG IL  GLP FTGF+ + +++    +   PG
Sbjct: 245  PSFV-NTYSDEDLVKSTSIQCAIKSIEDHGAILDVGLPDFTGFIAKKDISNFENL--LPG 301

Query: 144  LLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
             +  G + +  DR+  V    SD       ++      SID ++PG +V    ++I +NG
Sbjct: 302  AVFLGNITKKSDRSIVVNTNFSDKKNRITQIS------SIDAVIPGQIVDLLCETITKNG 355

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            V        +G +++ HL+ +F   + K+ +     +  RI+                 L
Sbjct: 356  VSGKAFGLVSGVINVSHLR-SFSEEDLKHKFAIGSSIRCRII---------------ACL 399

Query: 263  HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------STPAYVTIS 309
             N+   S  KV  +     ++R++  L     + + P+             S   Y+ + 
Sbjct: 400  ENK---SGDKVLILSTLPHILRLEDSLKSTEGLDAFPIGYTFESCAVKGRDSDYLYLALD 456

Query: 310  D-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
            D     V    V ++E   K  S    R+LG+  ++ +          +      +D+  
Sbjct: 457  DDRLGKVHSSRVGEIENPEKLSS----RVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPI 512

Query: 365  G-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            G +    ++ +V S G  ++ F G  KA  P  H+S+  +V P +KFK+G+++  R+L V
Sbjct: 513  GELAPSCEITSVSSSGIELKIFNGQFKANVPALHISDTRLVYPERKFKIGSKVKGRILSV 572

Query: 423  KSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNG 474
              +  + +T KK+LV     +  ++S+Y  A +       T   +   + +GC + F+ G
Sbjct: 573  NLRGNVHMTLKKSLVNIEADESPLVSNYESAKEIKEKNEKTLATVQVFKPNGCVISFFGG 632

Query: 475  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 529
            + GF P SE+      +P     +GQ V  +++      RRI  +  +   + ++     
Sbjct: 633  LSGFLPNSEISEVFVKKPEEHLRLGQTVVVKLLDVDADRRRIIATCKVSNEQAAQQKDTI 692

Query: 530  DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGY 588
            +++V   +L++  V   T  +V+V +      +G I   HL+D  +E        I+ G 
Sbjct: 693  ENIVPGRTLITVSVIEKTKESVIVEIPGVNL-RGVIYAGHLSDARIEQNRAQLKKIRIGA 751

Query: 589  EFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETG 642
            E   L++  D  +    ++ K SLI  A++  LP    D  +I  +  +H Y+ +I + G
Sbjct: 752  ELTGLVIDKDTRTRVFNMTLKSSLIKDAKKKTLPLTYDDVKNIKKDVPMHAYIKSISDKG 811

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
             FV F G+  G    S AVD +  D++KT+Y+ QSV   +L  + +  +  LSLK     
Sbjct: 812  LFVAFNGKFIGLVLPSYAVDSRDIDINKTFYINQSVTVYLLRTDDQNQKFLLSLKA---- 867

Query: 703  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSF 760
                   +E   +E  I     S  + S   W +   IGSV++ K+   + N   V+++ 
Sbjct: 868  ---PKVKEEKKQVESNI----ESPIDSSIKTW-DDISIGSVVKAKIKSVKKNQLNVILAA 919

Query: 761  EEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVDLSLKTVFI 809
              H         D Y  I   +   +  +   VIQ  I+   DV K+ + + ++ +    
Sbjct: 920  NLHGRVDIAEVFDTYEEIKDKKQPLSHYKKDDVIQVKIIGNHDV-KSHKFLPITHRISKA 978

Query: 810  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASV 868
                 +    + + K+   +  +++ V + +   V     N+L L++ P     I    +
Sbjct: 979  SILELSMKPLELKSKETHTKTLEEIKVGEELTGFVNNSSGNHLWLTISPVLKARISLLDL 1038

Query: 869  SDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSKRAKKKSSY 927
            ++ +T +F +    N +SV     AL    ++       + AI +T           S+ 
Sbjct: 1039 TENDT-RFSE----NVESVFPLGSALQVKVASVDHEHGFINAIGKTHVDVD-----MSTI 1088

Query: 928  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
             V   +   +  +    + L  G    G   IT+  DD S  ++  F + KI   +   +
Sbjct: 1089 KVADELPGRVLNVAEKYVLLDLGNKVTGISFITDALDDFSISLKEAFQD-KINNVIPTTV 1147

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1047
            +A  N  + K     ELS++ +      I S       DV  G  V G +  V+++   +
Sbjct: 1148 LA-VNAENKK----IELSLRSATPKSRSINS-----HNDVKQGDIVDGIIKNVNDKGIFV 1197

Query: 1048 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1107
             +S+ ++A  F+  +    S L+E+++ +   + V G V++ +++ + + L LR      
Sbjct: 1198 YLSKKVEA--FVPVTKLSDSYLKEWKKFYKPMQYVVGKVVTCSEDSR-ISLTLRE----- 1249

Query: 1108 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKN 1162
            S+   D+      + I  GDI  G +  +     G+ V++    +  G  H TE+ +
Sbjct: 1250 SEVNGDLKVLKSYSDIKAGDIFDGTVKNVTD--FGVFVKLDNTVNATGLAHVTEIAD 1304



 Score = 44.3 bits (103), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 13/158 (8%)

Query: 1252 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1310
            + +V+S G  + + + +  A V   ++SD  +  PE++F IG  V GR+LSV  L   V 
Sbjct: 521  ITSVSSSGIELKIFNGQFKANVPALHISDTRLVYPERKFKIGSKVKGRILSVN-LRGNVH 579

Query: 1311 VTLKTS-DSRTASQSEINNLSNLHVG-------DIVIGQIKRVESYGLFITIENTNLVGL 1362
            +TLK S  +  A +S +  +SN           +  +  ++  +  G  I+     L G 
Sbjct: 580  MTLKKSLVNIEADESPL--VSNYESAKEIKEKNEKTLATVQVFKPNGCVISFFG-GLSGF 636

Query: 1363 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
               SE+SE  V   E   R G+ V VK+L VD ++RRI
Sbjct: 637  LPNSEISEVFVKKPEEHLRLGQTVVVKLLDVDADRRRI 674



 Score = 42.0 bits (97), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 107/246 (43%), Gaps = 38/246 (15%)

Query: 176  DLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFLTYFTGTVDIF----------HLQNTF 224
            D+  I +   +PG +++   + +L + G  ++ +++ T  +D F           + N  
Sbjct: 1084 DMSTIKVADELPGRVLNVAEKYVLLDLGNKVTGISFITDALDDFSISLKEAFQDKINNVI 1143

Query: 225  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH--VKVGDIYDQSKV 282
            PTT               +L V+  ++ + L+L      +R+  SH  VK GDI D    
Sbjct: 1144 PTT---------------VLAVNAENKKIELSLRSATPKSRSINSHNDVKQGDIVDGIIK 1188

Query: 283  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 342
               D+G+ + L          A+V ++ +++  +++ +K YK    V  +++     +  
Sbjct: 1189 NVNDKGIFVYL-----SKKVEAFVPVTKLSDSYLKEWKKFYKPMQYVVGKVVTCSE-DSR 1242

Query: 343  ATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 399
             +  L+ S   G   ++ ++SD+K G +  G V  V  FG  V+    V A   L H++E
Sbjct: 1243 ISLTLRESEVNGDLKVLKSYSDIKAGDIFDGTVKNVTDFGVFVKLDNTVNA-TGLAHVTE 1301

Query: 400  FEIVKP 405
                KP
Sbjct: 1302 IADKKP 1307


>gi|297301793|ref|XP_001105950.2| PREDICTED: protein RRP5 homolog [Macaca mulatta]
          Length = 1858

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 379/1394 (27%), Positives = 639/1394 (45%), Gaps = 166/1394 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +  +  VV LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIIEKVKGSGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  +     + L+ P              G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEEISCFLILVTP-------------FGLTLNFLTFFTGVVDFMHLDPKKAGTY 308

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 309  FSN-----QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 363

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 364  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 420

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 421  SLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 480

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTLV+SKL +++ YA+A   L THG+I +++
Sbjct: 481  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHGFIIRVK 540

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 541  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 600

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 601  SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 659

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 660  VANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 719

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 720  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 779

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIGSVIEGK 747
            + LSL+ S C+  D +      L +  E++  ++S  S  +   ++ +     G  ++  
Sbjct: 780  MLLSLRLSDCALGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDLV 839

Query: 748  VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL  
Sbjct: 840  VQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLHQ 899

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  H   ++
Sbjct: 900  DLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAFS 941

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK--- 922
              S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R     
Sbjct: 942  LTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPTRKDSET 999

Query: 923  ----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
                            KK +  +G +V   +  IKP  + +    G  G IH + + DD 
Sbjct: 1000 VDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDV 1059

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML--- 1011
               +    +  K+G+TVTAR+I      DMK   FL            ELS++PS L   
Sbjct: 1060 PEGISPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTIPELSVRPSELEDG 1115

Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++    
Sbjct: 1116 HTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1175

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
             L+   ++F +G+A+   V+  +  K  L L L             I    ++    EG+
Sbjct: 1176 VLKHPDKKFRVGQALRATVIGPDSSKAFLCLSL-------------IGPHKLE----EGE 1218

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            +  GR+ K+     GL V      +G++    +    VSD    Y E    PL  +   +
Sbjct: 1219 VAMGRVVKVTPN-EGLTVSFP---FGKIGTVSI--FHVSD---SYSE---TPLEDFVPQK 1266

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             V+C +L  + +V     + LSLR      SS  + +  + V+ P   +  I+D+    +
Sbjct: 1267 VVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQL 1313

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEP 1304
            ++GYV ++   G F  L   +      S++S           K  P GKL+  RVL +  
Sbjct: 1314 LRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHLPEGKLLTARVLRLNH 1373

Query: 1305 LSKRVEVTLKTSDS 1318
                VE++    D+
Sbjct: 1374 QKNLVELSFLPGDT 1387



 Score =  293 bits (750), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1554
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1549 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1608

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1609 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1666

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1674
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1667 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1726

Query: 1675 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1727 QAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1786

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1787 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1846

Query: 1794 EYVES 1798
            EYVE+
Sbjct: 1847 EYVEA 1851



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 57/337 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 312  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 371

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 372  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 408

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 409  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVL 448

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 449  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 508

Query: 1314 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 509  K----KTLVESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 563

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 564  EYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 600



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 189/469 (40%), Gaps = 58/469 (12%)

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1002
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 371  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 418

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 419  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 472

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 473  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 530

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 531  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 573

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            Y  GQ VK  VL          + E S    L  +S   SSD     +  G   +K + +
Sbjct: 574  YT-GQVVKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAI 620

Query: 1243 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1299
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 621  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 679

Query: 1300 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            L +      V +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 680  LCLSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 738

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 739  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 787



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1184 FRVGQALRATVIGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1235

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1236 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1291

Query: 1323 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1292 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1349

Query: 1376 IETIYRA----GEKVKVKILKVDKEKRRISL 1402
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1350 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1380


>gi|340959662|gb|EGS20843.1| hypothetical protein CTHT_0026810 [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1796

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 393/1529 (25%), Positives = 714/1529 (46%), Gaps = 204/1529 (13%)

Query: 354  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKA--LCPLPHMSEFEIVKPGKKF 409
            G V  H DV   +V  G     D    + Q+  G  VKA  +C  P  +         K 
Sbjct: 366  GKVMGHLDVTADIVHSGS--GPDGADLVNQYKVGSRVKARVICNFPTAN---------KP 414

Query: 410  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCF 468
            K+G  L+  VL +K K        T  K    +L +   A   +I    + ++E   G +
Sbjct: 415  KLGISLLPHVLSLKPK--------TTTKDGQEVLPTDVLAHSAIIQECRVERVEPGIGLY 466

Query: 469  VRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SF 520
            V     GV GF   S +    +D   E S  Y +G V   R++  +S      ++L  S 
Sbjct: 467  VNVGVEGVSGFVHISRVKDGKIDTLFENSGPYKIGSVHPGRVVGYNSFDGVYLLSLEKSV 526

Query: 521  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLE 575
            + +P    ED  + +G++VSG V+ +  N      ++  IA+G S G +P  H++D HL+
Sbjct: 527  LEQPFLRIED--IPIGAVVSGQVEKLVVNTQGFGGLIVKIAEGIS-GLVPEMHVSDVHLQ 583

Query: 576  HATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQLPSDASHIHPNSVVHGY 634
            H    +   + G +    ++  N + + + L+ K +L+NS          +       G 
Sbjct: 584  HP---EKKFREGMKVKARVLSTNPARHQVRLTLKKTLVNSDAPAIKSYDELAVGMQAFGT 640

Query: 635  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 694
            +  +++ G  V+F G+L GF P S+  +    D  + + VGQ+V   +L  + E  R+ +
Sbjct: 641  IVAVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVLSFDPEVARLIV 700

Query: 695  SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 754
            S K               F LE+++A+              +   +G V+  KV +  + 
Sbjct: 701  SCKDPSA-----------FGLEKQLAL--------------KKLQVGDVVSAKVTQKTED 735

Query: 755  GVVVSFEEHSDVYGFITHHQLAGATVE-----------SGSVIQAAILDVAKAERLVDLS 803
             V V   + S +   +    L   +V            + ++ +  +L+  +  R + LS
Sbjct: 736  DVFVELID-SSLKAILPVGHLTDKSVNKTQAALKRIHVNQTLTELVVLEKNEGRRSIILS 794

Query: 804  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 863
             K   +          QA K+ +      D  + + V   V  +  +   +       ++
Sbjct: 795  HKPSLV----------QAGKEGKLISTVDDARLGEQVPGFVRNITASAAFVQFGSKLTAL 844

Query: 864  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK 923
               S+   +    P       QS++  + ++      GRL++ + + ++ E+   ++   
Sbjct: 845  LPKSLMPQDWHDKPNFGLHKYQSLLVKITSI--DKELGRLVVAIPSAADQESKKPEKPAD 902

Query: 924  KS------------SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE 971
            ++               +G L +A +  +K  +L ++      GRI ++++ D   ++ +
Sbjct: 903  QAVNPLDETVTTMADLTIGKLTKARVRAVKETQLNVEIADNIQGRIDVSQIFDKWEDIPD 962

Query: 972  --NLFSNFKIGQTVTARII----AKSNK--PDMKKS--FLWELSIKPSMLTVSEIGSKLL 1021
                   FK    +  R++    A++++  P   +S   + ELS KPS +    +   L 
Sbjct: 963  PRRPLKRFKPKDIIDVRVLGIHDARNHRFLPITHRSSHAVLELSAKPSDVQAPSLPEPLS 1022

Query: 1022 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1081
             E+ +V  G     +V  V + +  + +S +++ ++  ++++ + S+L   +R F IG A
Sbjct: 1023 LEKIEV--GSTHLAFVNNVASNYLWVNLSPNVRGRISAMEASNDLSKLANLERSFPIGCA 1080

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
            +   VLS++KEK  + L         S +T   S++     I +G ++  +++KI     
Sbjct: 1081 LKVRVLSVDKEKSRVDL---------SARTPGASHELTWDMIEQGMVLPAKVTKINDR-- 1129

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
             ++V++   + G VH  +L +         YDE   +PLS + + + V+  V+E+ ++ +
Sbjct: 1130 QVIVKLSESVAGPVHLPDLAD--------DYDEA--NPLS-HSKFEIVRVAVVEVDKSNK 1178

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
                + LS+R S           L++ +    + + K   L    I++G+VKNV+ KG F
Sbjct: 1179 ---KLRLSMRPS---------RVLNSSLPIKDREITKNTKLQVGDIIRGFVKNVSDKGLF 1226

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            + L   + A V + NLSD Y++  ++ F + +LV GR++S+     R+E++LK S     
Sbjct: 1227 VNLGGDVVALVKIKNLSDSYLKDWKEHFQVDQLVKGRIISLA--DGRIEMSLKQSVVEKD 1284

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN-LVGLCHVSELSEDHVDNIETIY 1380
                I  +S+L  G  V G++++VE +G FI I+ ++ L GLCH SE+++  V +  T+Y
Sbjct: 1285 YVPPIT-ISDLKEGQTVTGKVRKVEEFGAFIDIDGSDRLSGLCHRSEMADRMVQDARTLY 1343

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN-------------LQMSSEEESDEA 1427
              G++VK ++LKVD E +RI+LG+K SYFK+  ++             L   ++ +SDE 
Sbjct: 1344 NEGDRVKARVLKVDVENKRINLGLKPSYFKDGDEDDVDVDSDSDAGAALNGGADSDSDEE 1403

Query: 1428 IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDN 1487
            + ++G        ++ S   +D D+E  +     L  +E+         NLD        
Sbjct: 1404 MSDIGGALVVGESDDESDEEKDSDIEMTEAPEEGLIGLEA-GGFDWAAANLD-------- 1454

Query: 1488 GISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS 1547
              + + G+ D A+           KK K+ RE +    +   L+ + P+T  +FERL+  
Sbjct: 1455 --ADDHGNADVAEV--------PSKKAKKRREPQGIVDKTAELDVNGPQTASDFERLLLG 1504

Query: 1548 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1607
             P+SS +WI YMA  + + D+  AR IAERAL+TINIREE EKLN+W+AY NLE  YG  
Sbjct: 1505 QPDSSELWIAYMASQMQVNDLSSARQIAERALKTINIREETEKLNVWIAYLNLEVAYGT- 1563

Query: 1608 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRR 1666
             +E V +VF+RA  Y D ++VH  L  +Y ++ + K A++L  K++KK+   +  VW   
Sbjct: 1564 -DETVQEVFKRACTYNDDREVHERLASIYIQSGKYKEAEDLFEKIVKKYGSEAPHVWYNY 1622

Query: 1667 VQRLLKQ--QQEGVQAVVQRA--LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEG 1720
               L  +  + E  +A+++RA  +L   +  ++  + + A LEF+  NG  ++GR++FE 
Sbjct: 1623 AHFLHTKSNKPEQARALLKRATQVLGNTKDTYLYLLPKFAALEFRSPNGDREQGRTLFEK 1682

Query: 1721 ILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERAISL-SLPPKKMKFLFKKY 1772
            +L+ YPKR DLW+  LD E           D  +IR LFER   +  L P++ K  F+++
Sbjct: 1683 LLATYPKRFDLWNQLLDLETSASSVAKNPADPSVIRDLFERGTKVKGLRPRQAKAWFRRW 1742

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
             ++E+  G+ +  E V  KA E+  +  A
Sbjct: 1743 AQWEEKFGDAKSREKVSAKAQEWARAKAA 1771



 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 195/704 (27%), Positives = 318/704 (45%), Gaps = 45/704 (6%)

Query: 38  DNEIEANEDNL----LPTIFHVGQLVSC-IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS 92
           D E   +E+NL    +    H+GQ V   +V  +D+      +R I LSL  +    GLS
Sbjct: 191 DGEESGDENNLDDIDINLFVHLGQYVRAYVVSTIDESVAGKTRRHIELSLYPAHANSGLS 250

Query: 93  LETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPGLLLQGV 149
            + +     L A V S+EDHG+++  G+      GFLPR  L  +   + V+PG +L  +
Sbjct: 251 EQDIVLNSTLMASVVSVEDHGFVMDIGISDSQLKGFLPRKQLDPSIPEETVQPGSVLLCI 310

Query: 150 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 209
           V     + KVV LS+  D +        +  +ID  +PG      V  +  +G++   + 
Sbjct: 311 VTGKAASGKVVQLSTLVDRLGNPKHFPAEATTIDTFLPGTAAEVLVSEVHTHGLVGKVMG 370

Query: 210 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLHNRAP 267
           +   T DI H  +     +  N Y    +V AR++   PT+    +G++L P++L  + P
Sbjct: 371 HLDVTADIVHSGSGPDGADLVNQYKVGSRVKARVICNFPTANKPKLGISLLPHVLSLK-P 429

Query: 268 PSHVKVGD------------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 315
            +  K G             I  + +V RV+ G+GL +++    VS   +V IS V + +
Sbjct: 430 KTTTKDGQEVLPTDVLAHSAIIQECRVERVEPGIGLYVNVGVEGVS--GFVHISRVKDGK 487

Query: 316 VRKL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 372
           +  L      YK GS    R++G+   +G+    L+ S  E       D+  G VV G+V
Sbjct: 488 IDTLFENSGPYKIGSVHPGRVVGYNSFDGVYLLSLEKSVLEQPFLRIEDIPIGAVVSGQV 547

Query: 373 ----IAVDSFGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR- 426
               +    FG  IV+   G+  L P  H+S+  +  P KKF+ G ++  RVL     R 
Sbjct: 548 EKLVVNTQGFGGLIVKIAEGISGLVPEMHVSDVHLQHPEKKFREGMKVKARVLSTNPARH 607

Query: 427 -ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 485
            + +T KKTLV S    + SY E    +   G I  + +HG  V+FY  ++GF P SE+ 
Sbjct: 608 QVRLTLKKTLVNSDAPAIKSYDELAVGMQAFGTIVAVLQHGAIVQFYGQLRGFLPVSEMS 667

Query: 486 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSG 541
                +P   + VGQ V   ++S  P   R+ +S         E  L    +++G +VS 
Sbjct: 668 EAYIHDPKEHFRVGQTVSIYVLSFDPEVARLIVSCKDPSAFGLEKQLALKKLQVGDVVSA 727

Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NE 599
            V   T + V V +I     K  +P  HL D   + T      I       +L+VL+ NE
Sbjct: 728 KVTQKTEDDVFVELIDSSL-KAILPVGHLTDKSVNKTQAALKRIHVNQTLTELVVLEKNE 786

Query: 600 S-SNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 656
              +++LS K SL+ + ++  L S          V G+V NI  +  FV+F  +LT   P
Sbjct: 787 GRRSIILSHKPSLVQAGKEGKLISTVDDARLGEQVPGFVRNITASAAFVQFGSKLTALLP 846

Query: 657 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
           +S          +   +  QS+   I  ++ E GR+ +++  + 
Sbjct: 847 KSLMPQDWHDKPNFGLHKYQSLLVKITSIDKELGRLVVAIPSAA 890



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 181/864 (20%), Positives = 319/864 (36%), Gaps = 183/864 (21%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            M+ +G +  V +   ++   G LRG    ++  +  + +  E          F VGQ VS
Sbjct: 635  MQAFGTIVAVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEH---------FRVGQTVS 685

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSL-LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG 119
              VL  D    E+ +  +      +  L K L+L+ +Q G V++A V    +    +   
Sbjct: 686  IYVLSFD---PEVARLIVSCKDPSAFGLEKQLALKKLQVGDVVSAKVTQKTEDDVFVELI 742

Query: 120  LPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVYLSSDPDTVSK 171
              S    LP  +L + S    +  L        L + VV   +  R+ + LS  P  V  
Sbjct: 743  DSSLKAILPVGHLTDKSVNKTQAALKRIHVNQTLTELVVLEKNEGRRSIILSHKPSLVQ- 801

Query: 172  CVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 230
               K+ K IS +D    G  V   V++I  +   + F +  T       L  +    +W 
Sbjct: 802  -AGKEGKLISTVDDARLGEQVPGFVRNITASAAFVQFGSKLTAL-----LPKSLMPQDW- 854

Query: 231  NDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLG 290
                 H K N             GL     LL                  K+  +D+ LG
Sbjct: 855  -----HDKPN------------FGLHKYQSLL-----------------VKITSIDKELG 880

Query: 291  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
             L+            V I   A++E +K EK   +                        +
Sbjct: 881  RLV------------VAIPSAADQESKKPEKPADQA----------------------VN 906

Query: 351  AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIV----KP 405
              +  V T +D+  G + K +V AV      V+    ++    +  +  ++E +    +P
Sbjct: 907  PLDETVTTMADLTIGKLTKARVRAVKETQLNVEIADNIQGRIDVSQIFDKWEDIPDPRRP 966

Query: 406  GKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATD----RLITHG 457
             K+FK    +  RVLG+   R    + +TH+     S  A+L   A+ +D     L    
Sbjct: 967  LKRFKPKDIIDVRVLGIHDARNHRFLPITHR-----SSHAVLELSAKPSDVQAPSLPEPL 1021

Query: 458  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---------------YHVGQVV 502
             + KIE     + F N V        L  +     S+M               + +G  +
Sbjct: 1022 SLEKIEVGSTHLAFVNNVASNYLWVNLSPNVRGRISAMEASNDLSKLANLERSFPIGCAL 1081

Query: 503  KCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 560
            K R++S      R++LS    P    E   D+++ G ++   V  +    V+V +     
Sbjct: 1082 KVRVLSVDKEKSRVDLS-ARTPGASHELTWDMIEQGMVLPAKVTKINDRQVIVKLSES-- 1138

Query: 561  SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-LINSAQQ 617
              G +    LAD  + A  +       +E  ++ V++ + SN  L LS + S ++NS+  
Sbjct: 1139 VAGPVHLPDLADDYDEANPLS---HSKFEIVRVAVVEVDKSNKKLRLSMRPSRVLNSS-- 1193

Query: 618  LPSDASHIHPNS------VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 671
            LP     I  N+      ++ G+V N+ + G FV   G +          D    D  + 
Sbjct: 1194 LPIKDREITKNTKLQVGDIIRGFVKNVSDKGLFVNLGGDVVALVKIKNLSDSYLKDWKEH 1253

Query: 672  YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 731
            + V Q V+  I+ +    GRI +SLKQS         +++ ++    I+ L+        
Sbjct: 1254 FQVDQLVKGRIISLAD--GRIEMSLKQSV--------VEKDYVPPITISDLKE------- 1296

Query: 732  LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GS 784
                     G  + GKV +  +FG  +  +    + G     ++A   V+        G 
Sbjct: 1297 ---------GQTVTGKVRKVEEFGAFIDIDGSDRLSGLCHRSEMADRMVQDARTLYNEGD 1347

Query: 785  VIQAAILDVAKAERLVDLSLKTVF 808
             ++A +L V    + ++L LK  +
Sbjct: 1348 RVKARVLKVDVENKRINLGLKPSY 1371



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 170/377 (45%), Gaps = 46/377 (12%)

Query: 87   LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL----PRNNLAENSGID--V 140
            L + LSLE ++ G    A+V ++  +   ++   P+  G +      N+L++ + ++   
Sbjct: 1017 LPEPLSLEKIEVGSTHLAFVNNVASNYLWVNLS-PNVRGRISAMEASNDLSKLANLERSF 1075

Query: 141  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 200
              G  L+  V S+D+ +  V LS+     S  +T        D++  GM++  +V  I +
Sbjct: 1076 PIGCALKVRVLSVDKEKSRVDLSARTPGASHELT-------WDMIEQGMVLPAKVTKIND 1128

Query: 201  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 260
              V++       G V +  L + +   N  + +++ + V   ++ VD +++ + L++ P 
Sbjct: 1129 RQVIVKLSESVAGPVHLPDLADDYDEANPLS-HSKFEIVRVAVVEVDKSNKKLRLSMRPS 1187

Query: 261  LLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 311
             + N + P         + ++VGDI      V+     GL +++    V   A V I ++
Sbjct: 1188 RVLNSSLPIKDREITKNTKLQVGDII--RGFVKNVSDKGLFVNLGGDVV---ALVKIKNL 1242

Query: 312  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKP 364
            ++  ++  ++ ++    V+ RI+       LA G ++ S  + +V        T SD+K 
Sbjct: 1243 SDSYLKDWKEHFQVDQLVKGRIIS------LADGRIEMSLKQSVVEKDYVPPITISDLKE 1296

Query: 365  GMVVKGKVIAVDSFGAIVQFPGG--VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL-- 420
            G  V GKV  V+ FGA +   G   +  LC    M++  +      +  G  +  RVL  
Sbjct: 1297 GQTVTGKVRKVEEFGAFIDIDGSDRLSGLCHRSEMADRMVQDARTLYNEGDRVKARVLKV 1356

Query: 421  GVKSKRITVTHKKTLVK 437
             V++KRI +  K +  K
Sbjct: 1357 DVENKRINLGLKPSYFK 1373


>gi|367003163|ref|XP_003686315.1| hypothetical protein TPHA_0G00450 [Tetrapisispora phaffii CBS 4417]
 gi|357524616|emb|CCE63881.1| hypothetical protein TPHA_0G00450 [Tetrapisispora phaffii CBS 4417]
          Length = 1706

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 358/1262 (28%), Positives = 593/1262 (46%), Gaps = 185/1262 (14%)

Query: 598  NESSNLLLSAKYSLINSAQQLP-------SDASHI-HPNSVVHGYVCNIIETGCFVRFLG 649
            N+  ++ ++ K +L+N+             DA+ +   NS     V      G  + F G
Sbjct: 560  NDRGHIFVTLKKTLVNTTDDDDFTIITSYDDATAVKESNSKTIATVLQFRPAGAVISFFG 619

Query: 650  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
             + GF P S+  +       +   +GQ+V   +L+V+ E  RI  + K S   S +   +
Sbjct: 620  GVRGFIPNSEISEAFVRRPEEHLRLGQTVIVKLLEVSGERSRIVGTCKVSAAKSAEQKDL 679

Query: 710  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYG 768
                                     ++ F++G ++I+ +V E     V+V  ++ S++ G
Sbjct: 680  -------------------------IKSFVLGRTIIDVEVIEKTKESVLVELKD-SELRG 713

Query: 769  FITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFID-------- 810
             I    L+ + +E           GS ++  I+D+    ++ ++SLK   I         
Sbjct: 714  VINVGHLSDSRIEQNRAELKKIRIGSKLRGLIIDIDSKTQIFNMSLKKSLIKDAEKEILP 773

Query: 811  -RFREANSNRQAQKKKRKREASKDLGVHQTVNA-IVEIVKENYLVLSLPEYNHSIGYASV 868
              +++  S  ++       ++  + GV    N   V +V  N+ V S     +SI Y + 
Sbjct: 774  INYQQIVSVGKSTPLHGYVKSVSNKGVFVAFNGKFVGLVLPNFAVESRKIDINSIYYVN- 832

Query: 869  SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL-----KAISETETSSSKRAKK 923
                            QSV A ++         R LL L     K    T T +S     
Sbjct: 833  ----------------QSVTAYLLRFDDGKE--RFLLSLRDEKPKQKENTITPASLLNPV 874

Query: 924  KSSYD------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFS 975
             SS        +G  ++A+IT +K  +L +       GRIHI EV D+   +   ++  S
Sbjct: 875  DSSVSNFADCTLGKFIKAKITAVKKNQLNVNIADNLFGRIHIAEVYDNLKQIKDAKHPLS 934

Query: 976  NFKIGQTVTARIIA---------KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1026
            NFK+G  V  ++I           S   ++K   + EL++KPS +  +E+    L +  D
Sbjct: 935  NFKVGDIVNVKVIGLHDFVNHKFVSKFSELKAKSILELTMKPSEMKSNEVK---LLKASD 991

Query: 1027 VSIGQRVTGYVYKVDNE--WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1084
            + +GQ + G+V  V +   W  +T S H +   F L      S  +       IG A+  
Sbjct: 992  LEVGQDIVGFVNNVKDSTIWLSITPSLHARLSSFNLTENSNDSNGESL-----IGSALKV 1046

Query: 1085 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1144
             + SI+ +     L+++   D + D             I+ G  V  +I K+   +  L 
Sbjct: 1047 QIKSIDSKNN--SLIVKTESDSVVD-------------INVGSTVDAKIVKVTDKLVLLQ 1091

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            ++ G +              ++D L  Y +     + G    + +   VL  +       
Sbjct: 1092 LRNGSNAVS----------YITDALDDYSK-TLPEVYGNMISKIIPATVLAFNAE---NN 1137

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
             ++LSLRS   G  S            P  H     DL PN IV   VKNVT KG F+ L
Sbjct: 1138 KIKLSLRSK--GAYSL-----------PTVHT----DLKPNDIVNAIVKNVTEKGIFVAL 1180

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
            S  LDA V +S LSD Y++  +  F   + V G+V++    S R+ +TLK S+     Q 
Sbjct: 1181 SSNLDAFVPISKLSDSYLKEWKAFFKPMQPVVGKVVTCANNS-RILLTLKESEVNGEIQI 1239

Query: 1325 EINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAG 1383
             + N +++ VGDI  G +K V  +G+F+ ++NT N+ GL H SE++E   +++++++  G
Sbjct: 1240 -LKNYNDIKVGDIFSGVVKNVADFGVFVKLDNTLNVSGLAHSSEVAESVPEDLQSLFGPG 1298

Query: 1384 EKVKVKILKVDKEKRRISLGMKSSYFK--NDADNLQMSSEEESDEAIEEVGSYNRS---S 1438
            +KVK  +LKV+ EK+++SL +K+S+F   N   +   SS+E+ D  +E+    N S   S
Sbjct: 1299 DKVKAYVLKVNPEKKQLSLSLKASHFSKTNSGKSANDSSDEDGDVIMEDAEYNNVSDAGS 1358

Query: 1439 LLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDE 1498
             +E+++  +    + S DG SL  A  +  A +      LD  Q D ++   ++   T  
Sbjct: 1359 DVEDTTTVITKQAVMSTDGLSLS-AGFDWTAKI------LDQAQSDDESEEDEDFTET-- 1409

Query: 1499 AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKY 1558
                  K NRH KK+     ++ I       +   AP +  +FERL+  +PNSS VW+ Y
Sbjct: 1410 ------KKNRHRKKRAHVVEDKTID------INTRAPESVGDFERLIMGNPNSSVVWMNY 1457

Query: 1559 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1618
            MAF L +++++KAR I+ERAL+TIN REE EKLNIW+A  NLEN +G+  EE +  VF++
Sbjct: 1458 MAFQLQLSEIDKAREISERALKTINFREEAEKLNIWIAKLNLENTFGS--EETLEDVFKK 1515

Query: 1619 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEG 1677
            A QY D   +H  LL + + + Q     EL     KKF      +W+     L+ Q+Q  
Sbjct: 1516 ACQYMDSFTIHSKLLSILQMSGQTNKTAELFKTTAKKFGSEKVSIWVSWGDWLISQKQSN 1575

Query: 1678 -VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1736
              + ++  AL +LP+  HI+ + + A LE+  G  +RGRS+FEG++++  KR D+W++Y+
Sbjct: 1576 EARNILSSALKALPKRHHIEVVRKFAQLEYAKGDPERGRSLFEGLIADAGKRIDIWNVYI 1635

Query: 1737 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            DQEI++ D   +  LFER I   +  K+ KF F K+L+YE+   +E+ I YVK KA E+ 
Sbjct: 1636 DQEIKVDDKKKVEDLFERVIQKKITRKQAKFFFNKWLQYEEGKEDEKAIGYVKAKATEFA 1695

Query: 1797 ES 1798
            ES
Sbjct: 1696 ES 1697



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 303/1257 (24%), Positives = 528/1257 (42%), Gaps = 186/1257 (14%)

Query: 49   LPTIFHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
            L  +F VGQ + C V +   LD   K+  KR++ LS+  S +    S + + +   +   
Sbjct: 197  LIDLFKVGQWLRCSVTENTALDATTKK--KRRLELSIEPSAV-NTFSADDLNKFSTVQCS 253

Query: 106  VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVYLSS 164
            VKSIEDHG IL  G+ +FTGF+ + +    +  ++KPG + L  ++   DRT  V  + S
Sbjct: 254  VKSIEDHGAILDLGISNFTGFISKKD--SKTFDNLKPGHVFLANIINKSDRTVTVNQVFS 311

Query: 165  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
              + VS          SID +VPG +V    + I  NG+         G +   HL+ TF
Sbjct: 312  KKNKVSHIS-------SIDCVVPGQLVEFLSEKIGGNGIFGKAFGSIAGYITDIHLE-TF 363

Query: 225  PTTNWKNDYNQHKKVNARILFVDPTSRA---VGLTLNPYLLHNRAPPSHVK------VGD 275
                 K  +   + V ARI+ + P       + L+   +++   +  S ++      +G 
Sbjct: 364  SEEKLKEKFPVGQNVPARIIAILPNKEGDNVLLLSAQTHIISLTSVLSEIENLEAFPIGY 423

Query: 276  IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 335
             +D + +   D    L L + +  V       I    E E             +  R+LG
Sbjct: 424  TFDSATIKGRDSSF-LYLTLDNERVGQVHNKNIGSALESE------------KISARVLG 470

Query: 336  FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQFPGG-VKALCP 393
            +  ++                    D+K G V+   ++ AV + G  ++  GG   A  P
Sbjct: 471  YTSVDNAFQLSTDPEMLAKKYVRAIDIKIGEVLTNCEITAVSTEGIQLKLFGGQFTAFVP 530

Query: 394  LPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVKSK----LAILSSYAE 448
              H+S+ ++V P +KFK+ +++  RVL V  +  I VT KKTLV +       I++SY +
Sbjct: 531  PLHISDTKLVYPERKFKIASKVKGRVLNVNDRGHIFVTLKKTLVNTTDDDDFTIITSYDD 590

Query: 449  AT----DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 504
            AT        T   + +    G  + F+ GV+GF P SE+       P     +GQ V  
Sbjct: 591  ATAVKESNSKTIATVLQFRPAGAVISFFGGVRGFIPNSEISEAFVRRPEEHLRLGQTVIV 650

Query: 505  RIMS-SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV----VTPNAVVVYVIAKG 559
            +++  S   SR +    +       + DL+K   L   ++DV     T  +V+V  +   
Sbjct: 651  KLLEVSGERSRIVGTCKVSAAKSAEQKDLIKSFVLGRTIIDVEVIEKTKESVLVE-LKDS 709

Query: 560  YSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ 617
              +G I   HL+D  +E        I+ G +   L++ +D+++    +S K SLI  A++
Sbjct: 710  ELRGVINVGHLSDSRIEQNRAELKKIRIGSKLRGLIIDIDSKTQIFNMSLKKSLIKDAEK 769

Query: 618  --LPSDASHI---HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 672
              LP +   I     ++ +HGYV ++   G FV F G+  G    + AV+ ++ D++  Y
Sbjct: 770  EILPINYQQIVSVGKSTPLHGYVKSVSNKGVFVAFNGKFVGLVLPNFAVESRKIDINSIY 829

Query: 673  YVGQSVRSNILDVNSETGRITLSL-----KQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 727
            YV QSV + +L  +    R  LSL     KQ   + T AS +            + SS  
Sbjct: 830  YVNQSVTAYLLRFDDGKERFLLSLRDEKPKQKENTITPASLLNP----------VDSSVS 879

Query: 728  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH-------SDVYGFITH-----HQL 775
            N ++        +G  I+ K+       + V+  ++       ++VY  +       H L
Sbjct: 880  NFADC------TLGKFIKAKITAVKKNQLNVNIADNLFGRIHIAEVYDNLKQIKDAKHPL 933

Query: 776  AGATVESGSVIQAAILDV--------------AKAERLVDLSLKTVFIDRFREANSNRQA 821
            +   V  G ++   ++ +               KA+ +++L++K        E  SN   
Sbjct: 934  SNFKV--GDIVNVKVIGLHDFVNHKFVSKFSELKAKSILELTMKP------SEMKSN--- 982

Query: 822  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQF 881
               + K   + DL V Q +   V  VK++ + LS+    H    A +S +N  +      
Sbjct: 983  ---EVKLLKASDLEVGQDIVGFVNNVKDSTIWLSITPSLH----ARLSSFNLTENSNDS- 1034

Query: 882  LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD--VGSLVQAEITE 939
             NG+S+I + + +            +K+I     S   + +  S  D  VGS V A+I +
Sbjct: 1035 -NGESLIGSALKVQ-----------IKSIDSKNNSLIVKTESDSVVDINVGSTVDAKIVK 1082

Query: 940  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 999
            +    + L+   G +   +IT+  DD S  +  ++ N  I + + A ++A + + +  K 
Sbjct: 1083 VTDKLVLLQLRNGSNAVSYITDALDDYSKTLPEVYGNM-ISKIIPATVLAFNAENNKIK- 1140

Query: 1000 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1059
                LS++      S+    L     D+     V   V  V  +   + +S +L A  F+
Sbjct: 1141 ----LSLR------SKGAYSLPTVHTDLKPNDIVNAIVKNVTEKGIFVALSSNLDA--FV 1188

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
              S    S L+E++  F   + V G V++     ++L L L+  +     + +   ND  
Sbjct: 1189 PISKLSDSYLKEWKAFFKPMQPVVGKVVTCANNSRIL-LTLKESEVNGEIQILKNYND-- 1245

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHL--YGRVHFTELKNICVSDPLSGYDEGQF 1177
               I  GDI  G +  +     G+ V++   L   G  H +E+      D  S      F
Sbjct: 1246 ---IKVGDIFSGVVKNVAD--FGVFVKLDNTLNVSGLAHSSEVAESVPEDLQS-----LF 1295

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL-----DGMSSTNSSDLSTDV 1229
             P      G  VK  VL+++   +    + LSL++S       G S+ +SSD   DV
Sbjct: 1296 GP------GDKVKAYVLKVNPEKK---QLSLSLKASHFSKTNSGKSANDSSDEDGDV 1343


>gi|336469521|gb|EGO57683.1| hypothetical protein NEUTE1DRAFT_122065 [Neurospora tetrasperma FGSC
            2508]
 gi|350290834|gb|EGZ72048.1| nucleic acid-binding protein [Neurospora tetrasperma FGSC 2509]
          Length = 1774

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 381/1403 (27%), Positives = 666/1403 (47%), Gaps = 193/1403 (13%)

Query: 474  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTR 526
            GV GF   S +    +D   E S  Y VG V   R++  ++      I+L  S + +P  
Sbjct: 465  GVSGFVHISRVKDGKVDALFENSGPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFL 524

Query: 527  VSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 581
              ED  + +G++VSGVV+ +  NA     ++  IA G S G +P  H AD HL++    +
Sbjct: 525  RIED--IPVGAVVSGVVEKMVVNAAGVGGLIVKIADGIS-GLVPEMHFADVHLQNP---E 578

Query: 582  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNI 638
               + G +   ++L  D  S  + L+ K +L+NS   LP+  S+  I       G + N+
Sbjct: 579  KKFREGLKVKARVLSTDAASRQIRLTLKKTLVNS--DLPAIQSYEQIAVGQQALGTIINV 636

Query: 639  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            ++ G  V+F GRL GF P S+  +    D  + + VGQ+V   ++  + +  ++ +S K 
Sbjct: 637  LQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKD 696

Query: 699  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 758
                          F LE+++A+              +   IG V+  KV +  D  V V
Sbjct: 697  PSA-----------FGLEKQLAL--------------KKLQIGDVVSAKVTQKTDDDVFV 731

Query: 759  SFEEHSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLKTVF 808
               + S        H    +  ++ S ++            IL+  +A R + LS K   
Sbjct: 732  ELADSSLKAILPVAHLTDKSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPSL 791

Query: 809  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYAS 867
            +   +E          +   E S   G  + + A    V+    L   LP+        S
Sbjct: 792  VKASKEGKFLTTLDGARVGDEVS---GYVRNITATAVFVQFGGKLTALLPK--------S 840

Query: 868  VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE----TETSSSKRA-- 921
            +     Q  P       QSV   + ++  ++   RL++ +   +E     ET   K A  
Sbjct: 841  MIPREEQDKPDFGMFKSQSVTVKITSV--NTELNRLVVAIPGAAEQVKKVETKGEKVANP 898

Query: 922  --KKKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLF 974
              +  ++ D   +G L +A I  +K  +L ++      GRI +++V D    +   +   
Sbjct: 899  VDESITTLDDISIGKLTKARIVSVKDTQLNVQLADNIQGRIDVSQVYDSWEQIKDTKKPL 958

Query: 975  SNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECD 1026
              F+  Q V  R++    A++++  P   +S   + ELS KPS +        L F+  +
Sbjct: 959  KKFQPNQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEPLSFD--N 1016

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
            + +G    G+V  V      + +S  ++ ++  ++++ + S L    + F IG A+   V
Sbjct: 1017 LKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVRV 1076

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1146
            +S++ E K L L  R    G  D   +++ D +   +    I+ G+++K+      ++V+
Sbjct: 1077 VSVDAESKRLDLSAR--SPGSED---ELTWDKIAQDV----ILVGKVTKVDER--QVIVK 1125

Query: 1147 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1206
            +   L G VH  +L        +  Y+E   +P + + + + V+  V+E+ ++ +    +
Sbjct: 1126 LSESLAGPVHKIDL--------VDDYEEA--NP-AKFAKNEIVRVAVVEVDKSNK---RI 1171

Query: 1207 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1266
             LS R S           L++ +    K + +   L    I++G+VKNV+ KG F+ L  
Sbjct: 1172 RLSTRPS---------RILNSSLPVKDKEITQNTKLEVGDIIRGFVKNVSDKGLFVTLGG 1222

Query: 1267 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1326
             + A V + NLSD Y++  +++F + +LV GR++SV   + R+E++LK S         +
Sbjct: 1223 NVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISVA--NGRIEMSLKPS-VVDKDYVPL 1279

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEK 1385
              +S+L  G  + G++++VE +G FI I+ + NL GLCH SE+S+  V +   +Y  G+K
Sbjct: 1280 TTISDLKEGQTITGRVRKVEEFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDK 1339

Query: 1386 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE----------------EESDEAIE 1429
            VK K+LKVD   +RI+L +K SYF    D  +M  +                 ++D+A++
Sbjct: 1340 VKAKVLKVDVTAKRINLSLKPSYFGEQDDEDEMDVDEEDAEDSEGDDSDEDMSDADDAVQ 1399

Query: 1430 EVGSYN----RSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM 1485
              G+ N         E S V + D D++  + G                           
Sbjct: 1400 ITGTDNVEDESEDEDEASDVEMVDADVKGLEAGGF------------------------- 1434

Query: 1486 DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLV 1545
            D   S   G   +A   D +      KK+K  RE ++   +   L+ D P+T  ++ERL+
Sbjct: 1435 DWSASLEDGEKADASAADLE---ALAKKKKARREPQVTVDKTASLDVDGPQTASDYERLL 1491

Query: 1546 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1605
               PNSS +WI YMAF + ++D+  AR +AERA++TINI+EE EKLN+W+AY NLE  YG
Sbjct: 1492 LGQPNSSQLWIAYMAFQMQVSDLAAARQVAERAIKTINIKEEIEKLNVWIAYLNLEVAYG 1551

Query: 1606 NPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWL 1664
            N  EE V +VF+RA  Y D ++VH  L  +Y ++ + K AD+L  K++K+F + S +VW+
Sbjct: 1552 N--EETVDEVFKRACTYNDKQEVHERLASIYIQSGKRKQADDLFEKIVKEFGYKSPEVWV 1609

Query: 1665 RRVQRL--LKQQQEGVQAVVQRA--LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMF 1718
                 L       +  +A+++RA  +L    H ++  + + A LEF+  NG  ++GR++F
Sbjct: 1610 NYAHFLHTTAHSPDRARALLKRATQVLGKETHMYLALLPKFAALEFRSPNGDKEQGRTLF 1669

Query: 1719 EGILSEYPKRTDLWSIYLDQEIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLEY 1775
            E +L+ YPK+ DLW+  +D E    D D  +IR LF+R   +  L P++ K  F+++ ++
Sbjct: 1670 ENLLATYPKKFDLWNQLIDLETSAADADKGVIRDLFDRGSKVKGLKPRQAKAWFRRWAQW 1729

Query: 1776 EKSVGEEERIEYVKQKAMEYVES 1798
            E+  G+++  E V  KA E+  +
Sbjct: 1730 EEKNGDKKSRERVSAKAQEWART 1752



 Score =  191 bits (486), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 196/735 (26%), Positives = 335/735 (45%), Gaps = 62/735 (8%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLA-------------RAADALDPILDNEIEANEDNLLPT 51
           G V  +N  D+ + LP  + G                A+   D   ++E E + D  L +
Sbjct: 163 GSVCAINSLDIAVALPNNIIGHVPITAISAPLTKRLEASAGNDDAEESEDENDNDVDLES 222

Query: 52  IFHVGQLVSCIVLQLDDDKKE----IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
           +F +GQ V   V+   D+         KR I LSL+ SL   G++ + V     + A + 
Sbjct: 223 LFQIGQYVRAYVVSTVDEASTHTPGKAKRHIELSLQPSLANTGMAEQDVVVNSTVMAAIA 282

Query: 108 SIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSS 164
           S+EDHGY++   +      GFL R  + ++   + ++PG +L  +V + +   KVV LS+
Sbjct: 283 SVEDHGYVMDIEIADSKLQGFLARKQVDKSIPQEALQPGAVLLCIV-TKNAKGKVVQLST 341

Query: 165 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
             +T+           +ID  +PG      V  +  +G++   +     T D+ H     
Sbjct: 342 LGETMGNVENVPSTATTIDTFLPGTAADVLVSEVSSHGIVGKIMGSLDVTADLVHSGAGP 401

Query: 225 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR 284
              + ++ Y    ++ AR++   PT++      +P L  +  P S      I ++  V +
Sbjct: 402 DGIDLEDTYKVGSRLKARVICNFPTAK------HPKLGISALPHST-----IVEKCTVKQ 450

Query: 285 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEG 341
           V+  +GL +D+    VS   +V IS V + +V  L      YK GS    R++G+   +G
Sbjct: 451 VEPEIGLYVDVGVEGVS--GFVHISRVKDGKVDALFENSGPYKVGSVHAGRVVGYNAFDG 508

Query: 342 LATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPH 396
           +    L+ S  E       D+  G VV G V  + V++ G    IV+   G+  L P  H
Sbjct: 509 MYLISLEKSVLEQPFLRIEDIPVGAVVSGVVEKMVVNAAGVGGLIVKIADGISGLVPEMH 568

Query: 397 MSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 454
            ++  +  P KKF+ G ++  RVL     S++I +T KKTLV S L  + SY +      
Sbjct: 569 FADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLTLKKTLVNSDLPAIQSYEQIAVGQQ 628

Query: 455 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 514
             G I  + +HG  V+FY  ++GF P SE+      +P   + VGQ V   ++S  P + 
Sbjct: 629 ALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISFDPDAA 688

Query: 515 RINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
           ++ +S         E  L    +++G +VS  V   T + V V  +A    K  +P  HL
Sbjct: 689 KLIVSCKDPSAFGLEKQLALKKLQIGDVVSAKVTQKTDDDVFVE-LADSSLKAILPVAHL 747

Query: 571 ADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAKYSLINSAQQ----LPSD 621
            D  +  +  +S +K         +L++L+ NE+  +++LS K SL+ ++++       D
Sbjct: 748 TD--KSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPSLVKASKEGKFLTTLD 805

Query: 622 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 681
            + +     V GYV NI  T  FV+F G+LT   P+S     ++       +  QSV   
Sbjct: 806 GARV--GDEVSGYVRNITATAVFVQFGGKLTALLPKSMIPREEQDKPDFGMFKSQSVTVK 863

Query: 682 ILDVNSETGRITLSL 696
           I  VN+E  R+ +++
Sbjct: 864 ITSVNTELNRLVVAI 878



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 4/163 (2%)

Query: 365  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
            G +++G V  V   G  V   G V A   + ++S+  +    ++F+V   +  R++ V +
Sbjct: 1201 GDIIRGFVKNVSDKGLFVTLGGNVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISVAN 1260

Query: 425  KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGVQGFAPRS 482
             RI ++ K ++V      L++ ++  +     G + K+E+ G F+       + G   RS
Sbjct: 1261 GRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVRKVEEFGAFIDIDGSANLSGLCHRS 1320

Query: 483  ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
            E+      +   +Y  G  VK +++     ++RINLS  +KP+
Sbjct: 1321 EMSDKTVKDARKLYEEGDKVKAKVLKVDVTAKRINLS--LKPS 1361


>gi|254570329|ref|XP_002492274.1| RNA binding protein with preference for single stranded tracts of U's
            involved in synthesis of both [Komagataella pastoris
            GS115]
 gi|238032072|emb|CAY69994.1| RNA binding protein with preference for single stranded tracts of U's
            involved in synthesis of both [Komagataella pastoris
            GS115]
 gi|328353721|emb|CCA40119.1| Polyribonucleotide nucleotidyltransferase [Komagataella pastoris CBS
            7435]
          Length = 1694

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 397/1500 (26%), Positives = 706/1500 (47%), Gaps = 197/1500 (13%)

Query: 362  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
            V PG++V   ++ +   G   +  G +    PL H+  F + +  + +K+G+ +  RV+G
Sbjct: 324  VLPGVMVNAHILDITEEGIFCRVLGLLPGRIPLAHLKLFNVPEIRETYKIGSTIKSRVVG 383

Query: 422  VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW------ITKIEKHGCFVRFYNGV 475
            V     + +   + + S L + S+Y E+       G+      I   + +  ++      
Sbjct: 384  VLEYEGSKSLTLSTIPSILELDSTYDESPLESFPFGFTFESVKIVGKDSNNVYLELNEDT 443

Query: 476  QGFAPRSELGLDPGCEPSSMYHVGQVV-KCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 532
             G    S+L  +   +  S Y VG    K R++   P  +   L+  M P ++    L  
Sbjct: 444  YGQVHLSKLNKEVSID--SFYKVGSTHHKARVIGYSPVDKVFVLT--MDPRQLEAKFLNI 499

Query: 533  --VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 590
              + +G +V+GVV  V  + + + +  +   +  +P  H++D +     MK   K G + 
Sbjct: 500  QDIPIGEIVTGVVTKVHSHGLNIKIFDQ--FEAQVPYGHMSDVMLTYPEMK--FKIGTKV 555

Query: 591  DQLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
             +  VL     NL ++ K SL+ S + +L      + PN      V     TG  + F  
Sbjct: 556  -KGRVLKFYRGNLCVTLKKSLLRSERDELIFTYEDVVPNKRTFATVEKFFPTGVLMSFFN 614

Query: 650  RLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
             ++GF P+++  +    R +     +   SVR + +D  +   R+      SC  S D S
Sbjct: 615  NISGFLPKTEISEAYVNRPEDHLKLFQTISVRIDSIDPATNKFRV------SCLLSKDLS 668

Query: 708  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS-VIEGKVHESNDFGVVVSFEEHSDV 766
              QE                     K +  FI GS ++E  + E     ++V  ++ S+V
Sbjct: 669  EEQE---------------------KKISTFIPGSSILEVYIVEKMKDAMIVEVKD-SNV 706

Query: 767  YGFITHHQLA-GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR--------FREANS 817
             G I   QL+ G   ++ ++++ A+         V  SL+ +F+ R        F   +S
Sbjct: 707  RGVIQEGQLSDGDQNQNKTLLRTAV---------VGSSLEALFLHRDPKSRTINFTAKDS 757

Query: 818  NRQAQKKKRKREASKDL-GVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYA---SVSDYN 872
              +A K  +   + ++L  V + V   V  +    L +   E+   + G+A    ++D  
Sbjct: 758  LIRASKSGQLPASFEELPAVGEIVYGYVHTITNAGLFI---EFADGLSGFARTKDITDEP 814

Query: 873  TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL--LLKAISETETSSSKRAKKKSSYDVG 930
            + K P   F N QSV A ++ L       RL L  +   I        K     + +  G
Sbjct: 815  SDKLPSLYFKN-QSVRARILKLDDEFRKFRLTLKDIDHQIVAATNPVDKSITNLNEFVPG 873

Query: 931  SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARII 988
             + +A+I  + P +L ++      GRI +++V D    +   +   S+FK G  +  ++I
Sbjct: 874  KITKAKIKSVTPTQLTVELAENQLGRIDVSQVFDSLLEIKDTKKPLSSFKEGAELKVKVI 933

Query: 989  AKSNKPDMKKS--------FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1040
               NK     S         L ELSIK S L   E G   +     ++ G +  G+V + 
Sbjct: 934  GYQNKDSSFTSVAFRDWGDILVELSIKKSEL--EEEGKVNVLSLTQITPGTKWLGFVTRY 991

Query: 1041 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1100
               +  +++S   + +L ++D +   S ++E ++ + +G A+      I           
Sbjct: 992  ARGFWWVSVSPKFRTKLSLMDLSKSGS-VEELEKAYPLGSAIEVTAKQI----------- 1039

Query: 1101 RPFQDGISDKTVDI-SNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1156
                  I +K V++ S +N    I++   GD +  RI  +      + V++   +  +  
Sbjct: 1040 ------IGNKAVEVFSKENRIETINDVKVGDKLPCRIISLSHDY--VTVELSDKVKAKSF 1091

Query: 1157 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1216
             TE         L  Y E      S  D        VL +  T R  F   +SLRS    
Sbjct: 1092 ITE--------ALDDYSESLESTFSTND---ICTATVLSVDDTTRQIF---VSLRSE--- 1134

Query: 1217 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1276
                N+ D         K +E  ED+    IV+G++  +++ G ++ L R + A V +++
Sbjct: 1135 ----NAKD---------KLIESFEDVKRGDIVRGFITRISNFGVYVSLGRTVFALVRVTD 1181

Query: 1277 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1336
            +SD ++   +K   + + V G+++      +R+ +TLK S     + + ++   +L VGD
Sbjct: 1182 ISDLFLTDWKKHVKLNQFVTGKIVDAGE-ERRILMTLKESQVGQGTGA-LHQFDDLKVGD 1239

Query: 1337 IVIGQIKRVESYGLFITIENTNLV-GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1395
            +  G IK++  +G+FIT++  + V GLCH S++S+  ++N E+++  G++VKVKIL +++
Sbjct: 1240 VYEGTIKKIMDFGVFITLDGVHSVDGLCHRSQISDSKIENFESLFNQGDRVKVKILDINR 1299

Query: 1396 EKRRISLGMKSSYFKNDADNLQMSSEEESD----EAIEEVGSYNRSSLLEN-SSVAVQDM 1450
             K+++SLGMK+SYF N  D      EEE+D    E  + V S +   ++EN      QD 
Sbjct: 1300 NKKQLSLGMKASYFANRDD------EEEADQLRAETDDSVDSDSDDQMMENIFETRQQDS 1353

Query: 1451 DMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD-MDNGISQNQGHTDEAKTIDE----- 1504
            D E +                    V++D E P  + +G+S N G    A  +D+     
Sbjct: 1354 DDEPD--------------------VDIDTESPKKIASGLSTN-GFDWTASILDQAEDDE 1392

Query: 1505 ----KNNRHAKKKEKEEREQEIRAAEER--LLEKDAPRTPDEFERLVRSSPNSSFVWIKY 1558
                      KKK+K+ R+ +   AE++   L    P++  +FERL+  +P+SS +W+ Y
Sbjct: 1393 SSSSDEEDFTKKKDKKNRKTKASIAEDKSATLNTRTPQSVSDFERLLIGNPDSSILWMNY 1452

Query: 1559 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1618
            M+F L ++++EKAR IAERAL+ IN REE EK+NIW+A  NLEN +G   ++ + +VF+R
Sbjct: 1453 MSFQLQLSEIEKAREIAERALKIINYREEQEKMNIWIALLNLENTFGT--DDTLEEVFKR 1510

Query: 1619 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1677
            A QY D   +H  L+G++  +E+ +  +E+   M KKF  +   W+     LL++   + 
Sbjct: 1511 ACQYMDSYVMHQKLVGIFALSEKWEKCEEIYTVMTKKFGRNVTTWVSYGAFLLERGNPDE 1570

Query: 1678 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1737
             + V+ RAL  LP+  HI+ + + A LEF +G A++GRS+FEG+L++ PKR DLW++Y+D
Sbjct: 1571 ARQVLGRALKVLPKADHIEVVRKFAQLEFAHGDAEQGRSLFEGLLADVPKRIDLWNVYID 1630

Query: 1738 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            QEI++ +   +  LFER I+  L  K+ +F F K+LE+E+   + +  +YVK +A +YV+
Sbjct: 1631 QEIKINEKKKVEDLFERVITKKLTRKQARFFFGKWLEFEEKQKDVKAADYVKAQASDYVQ 1690



 Score =  169 bits (429), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 178/678 (26%), Positives = 316/678 (46%), Gaps = 47/678 (6%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
           L  IF +GQ +  +VL+      E  K KI LS+    +   L  + +  G VL   V S
Sbjct: 188 LSKIFQLGQWLRAVVLEESSVPSE-HKHKIQLSVEPEKVNAHLEDDDLVPGGVLQVAVNS 246

Query: 109 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDV----KPGL-LLQGVVRSIDRTRKVVYLS 163
           ++DHG I+  G     GF+   +  +NSGID+    KPG  LL  + +S ++    + L 
Sbjct: 247 VQDHGCIVDTG-KKIPGFIFSKSF-KNSGIDMETDLKPGFVLLATISKSNNKNTITLTLP 304

Query: 164 S--DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           S  + D  S   T      S+D ++PG+MV+  +  I E G+    L    G + + HL+
Sbjct: 305 SMNNKDNGSTLST----ATSVDAVLPGVMVNAHILDITEEGIFCRVLGLLPGRIPLAHLK 360

Query: 222 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLL-----HNRAPPSHVKVG 274
             F     +  Y     + +R++ V     +  LTL+  P +L     ++ +P      G
Sbjct: 361 -LFNVPEIRETYKIGSTIKSRVVGVLEYEGSKSLTLSTIPSILELDSTYDESPLESFPFG 419

Query: 275 DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV-RVRI 333
             ++  K+V  D    + L++      T   V +S + +E    ++  YK GS   + R+
Sbjct: 420 FTFESVKIVGKDSN-NVYLELNE---DTYGQVHLSKLNKE--VSIDSFYKVGSTHHKARV 473

Query: 334 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 393
           +G+  ++ +    +     E       D+  G +V G V  V S G  ++     +A  P
Sbjct: 474 IGYSPVDKVFVLTMDPRQLEAKFLNIQDIPIGEIVTGVVTKVHSHGLNIKIFDQFEAQVP 533

Query: 394 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKS-KLAILSSYAEATDR 452
             HMS+  +  P  KFK+G ++  RVL      + VT KK+L++S +  ++ +Y +    
Sbjct: 534 YGHMSDVMLTYPEMKFKIGTKVKGRVLKFYRGNLCVTLKKSLLRSERDELIFTYEDVVPN 593

Query: 453 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 512
             T   + K    G  + F+N + GF P++E+       P     + Q +  RI S  PA
Sbjct: 594 KRTFATVEKFFPTGVLMSFFNNISGFLPKTEISEAYVNRPEDHLKLFQTISVRIDSIDPA 653

Query: 513 SRRINLSFMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIP 566
           + +  +S ++    +SE+   K+ + + G  +++V       +A++V V      +G I 
Sbjct: 654 TNKFRVSCLLSKD-LSEEQEKKISTFIPGSSILEVYIVEKMKDAMIVEV-KDSNVRGVIQ 711

Query: 567 TEHLA--DHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQ--QLPSD 621
              L+  D  ++ T++++ +  G   + L +  D +S  +  +AK SLI +++  QLP+ 
Sbjct: 712 EGQLSDGDQNQNKTLLRTAV-VGSSLEALFLHRDPKSRTINFTAKDSLIRASKSGQLPAS 770

Query: 622 ASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVR 679
              +     +V+GYV  I   G F+ F   L+GFA R+K +  + +D L   Y+  QSVR
Sbjct: 771 FEELPAVGEIVYGYVHTITNAGLFIEFADGLSGFA-RTKDITDEPSDKLPSLYFKNQSVR 829

Query: 680 SNILDVNSETGRITLSLK 697
           + IL ++ E  +  L+LK
Sbjct: 830 ARILKLDDEFRKFRLTLK 847



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 350  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 409
            +A + L+ +  DVK G +V+G +  + +FG  V     V AL  +  +S+  +    K  
Sbjct: 1135 NAKDKLIESFEDVKRGDIVRGFITRISNFGVYVSLGRTVFALVRVTDISDLFLTDWKKHV 1194

Query: 410  KVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 468
            K+   +  +++   + +RI +T K++ V      L  + +     +  G I KI   G F
Sbjct: 1195 KLNQFVTGKIVDAGEERRILMTLKESQVGQGTGALHQFDDLKVGDVYEGTIKKIMDFGVF 1254

Query: 469  VRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 507
            +     + V G   RS++         S+++ G  VK +I+
Sbjct: 1255 ITLDGVHSVDGLCHRSQISDSKIENFESLFNQGDRVKVKIL 1295


>gi|226291917|gb|EEH47345.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb18]
          Length = 1780

 Score =  392 bits (1007), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 287/918 (31%), Positives = 486/918 (52%), Gaps = 104/918 (11%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARI 987
            G + +A+I  +K  ++ ++      GRI ++E+ D  D     +     FK  Q +  RI
Sbjct: 912  GRITKAKIVSVKETQINVQLADNIQGRIDVSEIFDGWDAIKDRKQPLRYFKPKQIIPVRI 971

Query: 988  I----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1038
            I    A+S+K  P   +S    ++ELS KPS L   +I    L     V IG    G+V 
Sbjct: 972  IGIHDARSHKFLPISHRSGKYPVFELSAKPSSLESKDIE---LLSLDKVEIGSSWLGFVN 1028

Query: 1039 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1098
             + ++   + I+ +++ +L I D + + S + +  + F +G A+  HV  +N +K  L L
Sbjct: 1029 NIGDDCLWINITPNVRGRLRITDVSDDLSLVGDVTKNFPVGSAIKVHVTGVNVDKNRLDL 1088

Query: 1099 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1158
                     S K  D  N    +   +G+I+ GR++K+      ++VQ+     G ++  
Sbjct: 1089 ---------SAKHGDPLNKRTISDFSKGEILLGRVTKVSDR--QVLVQLSDTTVGAINLI 1137

Query: 1159 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1218
            ++ +          D  +  P + + + + ++  +L++    +    + LS+R S     
Sbjct: 1138 DMAD----------DYTKVIP-ANFHKNEVLRVCILDVDVPNK---KILLSVRPS----- 1178

Query: 1219 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1278
                  LS+ +      ++ I  L  N IV+G+V+ V + G F+ L  ++ A V +S+LS
Sbjct: 1179 ----RVLSSSLPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLS 1234

Query: 1279 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV 1338
            D Y++  + EF + +LV GR++ V+  + +++++LK S      ++ I  + +L+ G IV
Sbjct: 1235 DSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAPIT-IRDLNRGQIV 1293

Query: 1339 IGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1397
             G+++ VE +G FI I+ T NL GLCH +E++E  V++   ++  G+ VK KILK+D +K
Sbjct: 1294 TGKVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDK 1353

Query: 1398 RRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDG 1457
             RISLG+K+SYFK         S+++SD    E G  N  S+ E+      +++ ES+D 
Sbjct: 1354 ERISLGLKASYFK--------ESDDKSDGENSEDG--NEQSVSESEDGGELELEFESDDD 1403

Query: 1458 GSLVLAQIESRASVPPLEVNLDDEQPDM----DNGIS----------QNQGHT--DEAKT 1501
             S+    +         E N+ DE   M    D G++             G T  DEA  
Sbjct: 1404 VSMGGVDLGGGDGS---ESNVSDEDVQMAGTEDTGVTGGLVTSGFDWNGSGTTGADEAND 1460

Query: 1502 IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAF 1561
                ++  A  K+K+ R+ EI+      L+   P++  ++ERL+   P+SS +W+KYMAF
Sbjct: 1461 SGSSSDGQAVLKKKKRRKPEIQVDRTGDLDAHGPQSIADYERLLLGEPDSSLLWLKYMAF 1520

Query: 1562 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1621
             L +++V+KAR IAERAL++I I ++ EK NIW+A  NLEN +GN  ++++  VF+RA Q
Sbjct: 1521 QLELSEVDKAREIAERALRSIRIGQDAEKFNIWIAMLNLENIFGN--DDSLEDVFKRACQ 1578

Query: 1622 YCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRL---LKQQQEG 1677
            Y DP+++H  +  +Y ++ +N+ ADEL    + KKF  S  +++     L   L   Q G
Sbjct: 1579 YNDPQEIHERMTSIYIQSGKNEKADELFQTTLKKKFTQSPNIYINYATFLFDTLADPQRG 1638

Query: 1678 VQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIY 1735
             +A++ RA+ SLP H H+   S+   LEF+  NG  +RGR++FE +LS +PKR DLW++ 
Sbjct: 1639 -RALLPRAIQSLPAHTHVDITSKFGQLEFRSPNGDIERGRTVFEALLSSFPKRVDLWNVL 1697

Query: 1736 LDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYEKSV-- 1779
            LD EI+ GD + +R LFER + L               L  K+ KF FKK+L +E+ V  
Sbjct: 1698 LDLEIKNGDAEQVRRLFERVLGLGHGIAADGTKTGPKRLKDKQAKFFFKKWLAFEEKVGG 1757

Query: 1780 GEEERIEYVKQKAMEYVE 1797
            G E+ ++ VK +A  YV+
Sbjct: 1758 GNEKMVDEVKARAAAYVK 1775



 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 181/750 (24%), Positives = 308/750 (41%), Gaps = 82/750 (10%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDN----------- 47
           K+ G V+ +N  D+ + LP  L G   L   +      ++  + +NED            
Sbjct: 161 KVLGQVSSINAHDIGLSLPNNLTGYVPLTSISRTFQQKIEKLLNSNEDENEGSDDGDSDD 220

Query: 48  ----LLPTIFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLSLLYKGLSLETVQEGM 100
                L + F +GQ +   V   + + K     GK+ I LS+       GLS   +    
Sbjct: 221 EEDLDLKSYFELGQYLRASVTATESETKNPQTKGKKHIQLSVDPRDANSGLSKSDMVVNT 280

Query: 101 VLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTR 157
            + A V S+EDHG ++  GL      GF+    +  +  +  +K G +   VV   +   
Sbjct: 281 TVQASVVSVEDHGLVMDLGLDDGQTKGFMSSKEIPPDLEVSQIKEGSVFLCVVTGHNANG 340

Query: 158 KVVYLSSD-PDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 215
            VV LS++ P   S   +  L    +I+  +PG      +  +   G+    +      V
Sbjct: 341 SVVKLSANLPAAGSIKKSHYLTSAPTINSFLPGTAAEILLNEVTSTGMAGKIMGMLDAVV 400

Query: 216 DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL---------TLNPYLLHNRA 266
           D+    +T  T N    Y+   K+  R++   PT     L           +P +L   +
Sbjct: 401 DLVQSGSTTGTENLTTKYHVGAKIKGRLICTFPTVEPSKLGFSILEHVVKFSPTVLEQYS 460

Query: 267 PPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 325
               +  V  I  ++KV +V+ GLG+ +   +          +SD   + +   +  YK 
Sbjct: 461 TSEDIPAVSAIVPEAKVTKVEPGLGVYVQFNNKHYGFVHISRLSDDKVDSISATQGPYKV 520

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GA 380
            S    RI+GF  L+ L     +    +       DV  G VVKGK+       D   G 
Sbjct: 521 DSTHEARIVGFSALDNLYLLSFERKVIDQPFLRLEDVTVGAVVKGKIEKLLTGPDGIDGL 580

Query: 381 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS 438
           IV    G+  L P  H+S+ ++  P +KF+ G ++  R+L V  + +++ +T KK+L+ S
Sbjct: 581 IVSLADGISGLVPRMHLSDTKLQHPERKFREGTQVSARILSVNLEKRQLRLTLKKSLLNS 640

Query: 439 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
           +      Y++      + G I  I  HG  V+FY  V+              E   +   
Sbjct: 641 ESPAWKEYSDILPGNQSPGTIISIHPHGAIVQFYGEVR--------------EVRKL--- 683

Query: 499 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
             VV C+  S+   + + N    ++P           G LVS  V   +   +++ +   
Sbjct: 684 --VVSCKDPSTSTETYK-NAFENIQP-----------GDLVSCTVFEKSKEVILLRLEGS 729

Query: 559 GYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINS 614
           G     +  EH+ D    +H + + + I+ G +   L++L  +  + L+  S K SL  +
Sbjct: 730 GLV-ARLNAEHVTDGQSSKHGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQA 787

Query: 615 AQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 672
            Q  +LP+        S V G+V NII  G FV FL  LTGF P+    D   A     Y
Sbjct: 788 RQRGELPAKFEDFQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGY 847

Query: 673 YVGQSVRSNILDVNSETGRITLSLKQSCCS 702
            + Q++ S +  +  +  R TLS+K++  S
Sbjct: 848 TLSQTISSFVHSIEDDRQRFTLSMKENQTS 877



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 120/508 (23%), Positives = 204/508 (40%), Gaps = 110/508 (21%)

Query: 934  QAEITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 992
            +A++T+++P L + ++F    +G +HI+ ++DDK + +      +K+  T  ARI+  S 
Sbjct: 474  EAKVTKVEPGLGVYVQFNNKHYGFVHISRLSDDKVDSISATQGPYKVDSTHEARIVGFSA 533

Query: 993  KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1052
              +     L+ LS +  ++       +      DV++G  V G + K      LLT    
Sbjct: 534  LDN-----LYLLSFERKVI------DQPFLRLEDVTVGAVVKGKIEK------LLTGPDG 576

Query: 1053 LKAQLFILD---SAYEP------SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1103
            +   +  L    S   P      ++LQ  +R+F  G  V+  +LS+N EK+ LRL L+  
Sbjct: 577  IDGLIVSLADGISGLVPRMHLSDTKLQHPERKFREGTQVSARILSVNLEKRQLRLTLKK- 635

Query: 1104 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-----LYGRVHFT 1158
                      + N     +    DI+ G  S       G ++ I PH      YG V   
Sbjct: 636  ---------SLLNSESPAWKEYSDILPGNQSP------GTIISIHPHGAIVQFYGEVR-- 678

Query: 1159 ELKNICVS--DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV-----RGTFHV-ELSL 1210
            E++ + VS  DP S   E   +       G  V C V E S+ V      G+  V  L+ 
Sbjct: 679  EVRKLVVSCKDP-STSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEGSGLVARLNA 737

Query: 1211 RSSLDGMSSTNSSDLST-------------------------------DVDTPGKHLEKI 1239
                DG SS + S L+                                     G+   K 
Sbjct: 738  EHVTDGQSSKHGSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKF 797

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            ED      V G+VKN+ + G F+   R L   +    + D +V  P+  + + + ++  V
Sbjct: 798  EDFQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFV 857

Query: 1300 LSVEPLSKRVEVTLK---TSDSR---------TASQSEIN-------NLSNLHVGDIVIG 1340
             S+E   +R  +++K   TS  R          A+Q+ IN       +  +L  G I   
Sbjct: 858  HSIEDDRQRFTLSMKENQTSKQRVSDNARPASNANQASINPVDGDIKSFDDLTFGRITKA 917

Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSEL 1368
            +I  V+   + + + + N+ G   VSE+
Sbjct: 918  KIVSVKETQINVQLAD-NIQGRIDVSEI 944



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 41/252 (16%)

Query: 593  LLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVR 646
            +L +D  +  +LLS + S + S+  LP         S +  N +V G+V  +   G FV 
Sbjct: 1161 ILDVDVPNKKILLSVRPSRVLSSS-LPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVT 1219

Query: 647  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
                +T +   S   D    D    + V Q V   I+ V++E  ++ +SLK+S       
Sbjct: 1220 LGHEVTAYVRISDLSDSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESV------ 1273

Query: 707  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
              ++ ++     I  L                  G ++ GKV    +FG  +  +  +++
Sbjct: 1274 --LEPNYKAPITIRDLNR----------------GQIVTGKVRSVEEFGAFIVIDGTANL 1315

Query: 767  YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
             G     ++A   VE        G +++A IL +   +  + L LK  +   F+E++   
Sbjct: 1316 SGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDKERISLGLKASY---FKESDDKS 1372

Query: 820  QAQKKKRKREAS 831
              +  +   E S
Sbjct: 1373 DGENSEDGNEQS 1384



 Score = 45.1 bits (105), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 111/288 (38%), Gaps = 68/288 (23%)

Query: 311 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF--EGLVFT-HSDVKPGMV 367
           +++ +++  E+K++EG+ V  RIL     +      LK S    E   +  +SD+ PG  
Sbjct: 597 LSDTKLQHPERKFREGTQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQ 656

Query: 368 VKGKVIAVDSFGAIVQFPGGVKAL------CPLPHMS------EFEIVKPG--------- 406
             G +I++   GAIVQF G V+ +      C  P  S       FE ++PG         
Sbjct: 657 SPGTIISIHPHGAIVQFYGEVREVRKLVVSCKDPSTSTETYKNAFENIQPGDLVSCTVFE 716

Query: 407 ---------------------------KKFKVGAELVFRVLGVK------------SKRI 427
                                      +  K G+ L    +G K             + I
Sbjct: 717 KSKEVILLRLEGSGLVARLNAEHVTDGQSSKHGSALACIRVGQKLHDLVILSMQKVHRLI 776

Query: 428 TVTHKKTL--VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 485
            V++K +L   + +  + + + +  +     G++  I   G FV F  G+ GF P+  + 
Sbjct: 777 KVSNKPSLKQARQRGELPAKFEDFQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMD 836

Query: 486 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT---RVSED 530
            D   +P   Y + Q +   + S     +R  LS     T   RVS++
Sbjct: 837 DDHVAKPDFGYTLSQTISSFVHSIEDDRQRFTLSMKENQTSKQRVSDN 884



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 101/216 (46%), Gaps = 12/216 (5%)

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
            +L+  +  +D   K + LS  P  V  S    +D +  SI  L    +V   V+ +  NG
Sbjct: 1156 VLRVCILDVDVPNKKILLSVRPSRVLSSSLPIEDPEIKSISQLKVNDIVRGFVRRVANNG 1215

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            + ++     T  V I  L +++   +W++++   + V+ RI+FVD  +  + ++L   +L
Sbjct: 1216 LFVTLGHEVTAYVRISDLSDSY-LKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVL 1274

Query: 263  --HNRAPPSHVKVGDIYDQSKV---VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 317
              + +AP   + + D+     V   VR     G  + I  T  +       +++AE++V 
Sbjct: 1275 EPNYKAP---ITIRDLNRGQIVTGKVRSVEEFGAFIVIDGT-ANLSGLCHRTEMAEQKVE 1330

Query: 318  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 353
               K +++G  V+ +IL   H +   +  LKAS F+
Sbjct: 1331 DARKLFEKGDIVKAKILKIDHDKERISLGLKASYFK 1366


>gi|296804114|ref|XP_002842909.1| rRNA biogenesis protein RRP5 [Arthroderma otae CBS 113480]
 gi|238845511|gb|EEQ35173.1| rRNA biogenesis protein RRP5 [Arthroderma otae CBS 113480]
          Length = 1819

 Score =  392 bits (1006), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 380/1423 (26%), Positives = 661/1423 (46%), Gaps = 206/1423 (14%)

Query: 476  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 532
            QGF   S L    +D        Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 498  QGFVHLSRLADERVDSIYSSEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 554

Query: 533  VKL-----GSLVSGVVDV--VTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSV 583
            ++L     GS V G ++   + P  +   +++      G +P  H+AD  L+H    +  
Sbjct: 555  LRLEDVTVGSTVKGKIEKLHIGPEGIDGLIVSLTDKISGLVPGMHMADTKLQHP---EKK 611

Query: 584  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
             + G +   ++L +D +   L L+ K SL+NS      D  +I   +   G +  I   G
Sbjct: 612  FREGLKVSVRVLSVDLQKHQLRLTMKKSLLNSESAPWKDYENISAGNRSPGTLIKIQNNG 671

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
              V+F G + GF P S+  +   +D S+ + VGQ V  + L V+ E G++ +S K     
Sbjct: 672  AVVQFYGPVRGFLPVSEMSEAYISDPSQHFTVGQVVNVHALSVDPENGKLVVSCKDPATV 731

Query: 703  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 762
            + D    Q  F   EKI                     G V+ G V E +   +++  ++
Sbjct: 732  TAD---YQTAF---EKIRP-------------------GLVVSGTVFEKSSDDLLIKLQD 766

Query: 763  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 812
               V    + H   G+  +  S +             +  V K  RL+ ++ +       
Sbjct: 767  SGLVARLNSDHISDGSASKRASALNRIRVGQKMDGLLVYKVKKTHRLIQVTNRVTL---- 822

Query: 813  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 871
                  ++A  + R     +D+     V  ++  I+ E   V  L      I    V D 
Sbjct: 823  ------KEAAAEGRLPAKFEDIKHGLKVTGLIRNIIPEGIFVEFLDNLTGLIPKRLVDDD 876

Query: 872  NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSS---- 926
            +  + P   +   Q + +TV A+   S   R LL LK + ++ ETS +  A +K +    
Sbjct: 877  HISR-PDFGYSRSQVLSSTVCAVQEDSE--RFLLSLKPVGKSKETSEAGSAPEKKTTARP 933

Query: 927  --------------YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE- 971
                            +G + +A+IT +K  +L +       GRI ++E+ D   ++ + 
Sbjct: 934  LTNPVDEELKSMEDITLGKVTKAKITSVKDTQLNVIIAENVQGRIDVSEIFDSWEDIKDR 993

Query: 972  -NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1021
             +    F   Q +  R++   +  + K         K  ++ELS KPS L        L 
Sbjct: 994  KHPLQIFHSKQILPVRVLGIHDARNHKFLPISHRSGKVSVYELSAKPSCLEAPTF-EPLH 1052

Query: 1022 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1081
             E   + +G    GYV  +  +   L IS +++ +L I D + + S     Q+ F +G A
Sbjct: 1053 LER--LKVGDIHIGYVNNIAEDCLWLNISPNVRGRLRITDISDDMSVRGNIQKHFPVGSA 1110

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
            +   V  ++ EK  L L  +    G + KT+ ++N      + +G I+ GR++K+     
Sbjct: 1111 IKVAVAGVDTEKNRLDLSAKI---GDTAKTLTVAN------LSKGMILLGRVTKVTDH-- 1159

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
             ++VQI  ++ G V   ++ +          D  + +P + + + + ++  V+++    +
Sbjct: 1160 QVLVQINDNVVGVVSLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK 1208

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
              +    S+R S           LS+ +      +  I  L    IV+G+++ V + G F
Sbjct: 1209 KIY---FSVRPS---------KILSSSLPVEDPEITSINQLRVGQIVRGFIRRVDNIGVF 1256

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            + L   + A + +S+LSD Y++  + EF + +LV GR+  V+  S ++++TLK S +   
Sbjct: 1257 VTLGHNVSAYIRVSDLSDSYLKEWKDEFQVDQLVQGRITLVDKESNKIQMTLKKS-ALDP 1315

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1380
            +      L +L VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y
Sbjct: 1316 NYKPPFTLKDLKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLY 1375

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKN--------------DADNLQMSSEEESDE 1426
               + VK KILKVD EK +I+LG+K+SYF +              +A  +++ +E++SDE
Sbjct: 1376 EKDDIVKAKILKVDLEKCQIALGLKASYFNDLPAEEESEDSGNDDNAGGIKLHAEDDSDE 1435

Query: 1427 AIEEVG-SYNRSSLLENSSVAVQDMDMESEDG------GSLVLAQIESRASVPPLEVNLD 1479
                 G   +     EN      D D++ ED       G LV +  +             
Sbjct: 1436 DTSMGGVDIDGEDEEENGDEGESDDDVQMEDAADDTKKGGLVTSGFDWTGD------GDK 1489

Query: 1480 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD 1539
            D+Q   D+  +++ G T                K K+ R+ EI+  +   L+ + P++  
Sbjct: 1490 DKQEVPDDSSAEDDGTT----------------KRKKRRKAEIQVDKTGDLDANGPQSVA 1533

Query: 1540 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1599
            ++ERL+   P+SS +W+KYMAF L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  N
Sbjct: 1534 DYERLLLGEPDSSLLWLKYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLN 1593

Query: 1600 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1659
            LEN +GN  ++++ +VF+ A +Y D  +++  +  ++ ++ + + ADEL    +KK   S
Sbjct: 1594 LENTFGN--DDSLEEVFKSACEYNDAHEIYDRMASIFIQSGKTEKADELFQAALKKKVSS 1651

Query: 1660 CKVWLRRVQRLLKQQQEGVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRG 1714
               +       L    E  Q    ++ RAL SLP H H++  S+   LEF+  NG  +RG
Sbjct: 1652 TPDFFLNYANFLFDTMEAPQRGRDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERG 1711

Query: 1715 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS--------------- 1759
            R++FEG+LS +PKR DLW++ LD EI++GD + +R LFER + +                
Sbjct: 1712 RTVFEGLLSSFPKRIDLWNVLLDLEIKVGDEEQVRRLFERVLGIGHGVVAADGSKEGPKK 1771

Query: 1760 -LPPKKMKFLFKKYLEYEKSV---GEEERIEYVKQKAMEYVES 1798
             L  K+ KFLFKK+L +E+ +   G+ + ++ VK +A +YV S
Sbjct: 1772 KLKEKQAKFLFKKWLAFEEKIASDGDLKMVDEVKARAADYVRS 1814



 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 296/1273 (23%), Positives = 533/1273 (41%), Gaps = 131/1273 (10%)

Query: 2    KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA--NEDNL----------- 48
            K+ G V+ +   D+ + LP  L G      A+   L  ++EA    DN            
Sbjct: 169  KILGQVSSIGIHDISLALPNNLTGFVPLT-AISKTLTQKVEALLGNDNSEDEDDEDDDFE 227

Query: 49   LPTIFHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
            L     VGQ +   V      D+DKK   K++I LS+       GL+   +     + A 
Sbjct: 228  LKDFVKVGQYLRASVTSTTRDDEDKKVKNKKRIELSIEPHAANSGLTKADMVVNATVQAS 287

Query: 106  VKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVV 160
            V S+EDHG I+  GL      GF+    L   +G+D   VK G +   +V   + +  VV
Sbjct: 288  VASVEDHGLIMDLGLDDSETKGFVSSRELP--AGVDISTVKEGSVFLCIVTGQNASGTVV 345

Query: 161  YLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 218
             LS+D  + +            +I+  +PG      +  +   G++   +      VDI 
Sbjct: 346  KLSADLASAASVKKAHFLNTAPTINAFLPGTAAEVLITEVTPRGLVGKIMGMLNAVVDIV 405

Query: 219  HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAV--GLTLNPYLLH------------N 264
            H   +    +    Y+   K+  R++   P+S  +  G ++   +L             N
Sbjct: 406  HSGASDGKKDLTTKYHVGAKIKGRLITTYPSSDPIKLGFSILDSVLKFSPTATLTSGDDN 465

Query: 265  RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EK 321
             AP     + DI  + KV  VD  LGL + + ST      +V +S +A+E V  +   E 
Sbjct: 466  DAP----SISDIIPEVKVTYVDSSLGLYVQLGSTKYQ--GFVHLSRLADERVDSIYSSEG 519

Query: 322  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDS 377
             YK GS    RI+GF  ++ L    L+    E       DV  G  VKGK+    I  + 
Sbjct: 520  PYKVGSTHEGRIIGFSAMDNLFLVSLEPKIIEQPFLRLEDVTVGSTVKGKIEKLHIGPEG 579

Query: 378  F-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 434
              G IV     +  L P  HM++ ++  P KKF+ G ++  RVL V  +  ++ +T KK+
Sbjct: 580  IDGLIVSLTDKISGLVPGMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKHQLRLTMKKS 639

Query: 435  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 494
            L+ S+ A    Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS 
Sbjct: 640  LLNSESAPWKDYENISAGNRSPGTLIKIQNNGAVVQFYGPVRGFLPVSEMSEAYISDPSQ 699

Query: 495  MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPN 549
             + VGQVV    +S  P + ++ +S    P  V+ D     + ++ G +VSG V   + +
Sbjct: 700  HFTVGQVVNVHALSVDPENGKLVVS-CKDPATVTADYQTAFEKIRPGLVVSGTVFEKSSD 758

Query: 550  AVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL-- 605
             +++ +   G     + ++H++D    + A+ +   I+ G + D LLV   + ++ L+  
Sbjct: 759  DLLIKLQDSGLV-ARLNSDHISDGSASKRASALNR-IRVGQKMDGLLVYKVKKTHRLIQV 816

Query: 606  SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 663
            + + +L  +A +  LP+    I     V G + NII  G FV FL  LTG  P+    D 
Sbjct: 817  TNRVTLKEAAAEGRLPAKFEDIKHGLKVTGLIRNIIPEGIFVEFLDNLTGLIPKRLVDDD 876

Query: 664  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 723
              +     Y   Q + S +  V  ++ R  LSLK    S   +   +     E+K     
Sbjct: 877  HISRPDFGYSRSQVLSSTVCAVQEDSERFLLSLKPVGKSKETS---EAGSAPEKKTTARP 933

Query: 724  SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS----------DVYGFITHH 773
             +     ELK +E   +G V + K+    D  + V   E+           D +  I   
Sbjct: 934  LTNPVDEELKSMEDITLGKVTKAKITSVKDTQLNVIIAENVQGRIDVSEIFDSWEDIKDR 993

Query: 774  QLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 831
            +       S  ++   +L +  A+  + + +S ++  +  +  +      +    +    
Sbjct: 994  KHPLQIFHSKQILPVRVLGIHDARNHKFLPISHRSGKVSVYELSAKPSCLEAPTFEPLHL 1053

Query: 832  KDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIA 889
            + L V       V  + E+ L L++ P     +    +S D + +   QK F  G ++  
Sbjct: 1054 ERLKVGDIHIGYVNNIAEDCLWLNISPNVRGRLRITDISDDMSVRGNIQKHFPVGSAIKV 1113

Query: 890  TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF 949
             V  + +     RL L  K     +T +     K      G ++   +T++   ++ ++ 
Sbjct: 1114 AVAGVDTEKN--RLDLSAKIGDTAKTLTVANLSK------GMILLGRVTKVTDHQVLVQI 1165

Query: 950  GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPS 1009
                 G + + ++ DD + V     +NF   + +   ++   + P+ K  F    S++PS
Sbjct: 1166 NDNVVGVVSLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKIYF----SVRPS 1217

Query: 1010 MLTVSEIGSKLLFEECDVS------IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1063
             +    + S L  E+ +++      +GQ V G++ +VDN    +T+  ++ A  +I  S 
Sbjct: 1218 KI----LSSSLPVEDPEITSINQLRVGQIVRGFIRRVDNIGVFVTLGHNVSA--YIRVSD 1271

Query: 1064 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1123
               S L+E++  F + + V G +  ++KE   +++ L+      + K      D     +
Sbjct: 1272 LSDSYLKEWKDEFQVDQLVQGRITLVDKESNKIQMTLKKSALDPNYKPPFTLKD-----L 1326

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
              G IV G++ K+      + +    +L G  H +E+    V D        Q      Y
Sbjct: 1327 KVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT------QL-----Y 1375

Query: 1184 DEGQFVKCKVLEI 1196
            ++   VK K+L++
Sbjct: 1376 EKDDIVKAKILKV 1388



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 154/362 (42%), Gaps = 29/362 (8%)

Query: 5    GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 64
            G V  + E  L + +   +RG  R  D  D   D  +  N    +   F VG  +   V 
Sbjct: 1064 GYVNNIAEDCLWLNISPNVRGRLRITDISD---DMSVRGN----IQKHFPVGSAIKVAVA 1116

Query: 65   QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 124
             +D +K      ++ LS ++    K L++  + +GM+L   V  + DH  ++     +  
Sbjct: 1117 GVDTEK-----NRLDLSAKIGDTAKTLTVANLSKGMILLGRVTKVTDHQVLVQIN-DNVV 1170

Query: 125  GFLPRNNLAEN----SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLK 178
            G +   ++A++    +  +      L+  V  +D   K +Y S  P  +  S    +D +
Sbjct: 1171 GVVSLIDMADDYTKVNPTNFHKNEALRVCVVDVDIPNKKIYFSVRPSKILSSSLPVEDPE 1230

Query: 179  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 238
              SI+ L  G +V   ++ +   GV ++     +  + +  L +++    WK+++   + 
Sbjct: 1231 ITSINQLRVGQIVRGFIRRVDNIGVFVTLGHNVSAYIRVSDLSDSY-LKEWKDEFQVDQL 1289

Query: 239  VNARILFVDPTSRAVGLTLNPYLLH-NRAPP---SHVKVGDIYDQSKVVRVDRGLGLLLD 294
            V  RI  VD  S  + +TL    L  N  PP     +KVG I    KV +V+   G  + 
Sbjct: 1290 VQGRITLVDKESNKIQMTLKKSALDPNYKPPFTLKDLKVGQIV-TGKVRKVEE-YGAFIA 1347

Query: 295  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI-LKASAFE 353
            I  +  +       S++AE+ V    + Y++   V+ +IL    LE     + LKAS F 
Sbjct: 1348 IDGS-ANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKILKV-DLEKCQIALGLKASYFN 1405

Query: 354  GL 355
             L
Sbjct: 1406 DL 1407


>gi|390357065|ref|XP_789726.3| PREDICTED: protein RRP5 homolog [Strongylocentrotus purpuratus]
          Length = 1841

 Score =  391 bits (1005), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 375/1413 (26%), Positives = 639/1413 (45%), Gaps = 174/1413 (12%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD-----NEIEANEDNLLPTI--- 52
            M +  VV E++E ++V+ LP G     +  D            NE    ED  LP I   
Sbjct: 96   MLVLAVVQEIHEYEIVLSLPNGQTAFVQITDVSSFFTQQLQELNESNGAEDQDLPNIQDV 155

Query: 53   FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 112
            + VG LV C V  L   K   G R+I  SL    +   L +  ++ GM L   V S+EDH
Sbjct: 156  YQVGNLVPCKVKSLGASKD--GHRRIQASLDYKEVNSELGISFIKAGMTLHGCVSSVEDH 213

Query: 113  GYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            GY +  G+     FL +    + +    G  +K G L+  +V+++    + + L+ DP+ 
Sbjct: 214  GYTIDLGIRGTNAFLAKEEATKGAKGRKGETMKTGKLVTCLVKAVKANGRSIILTFDPER 273

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            +  C        +   L+PG  +   V  +L N +++     + G VD  HL++T    +
Sbjct: 274  LKSCKATKATHTTFSSLIPGTRLDAMVTKVLSNSLIMDIFGLYKGCVDPIHLKDT---VD 330

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS-----HVKVGDIYDQSKVV 283
                Y+  +K+ A +L+  PT++++GL+LNP        P+      +  GDI + + VV
Sbjct: 331  ELTKYDIGQKLVAVVLYNCPTTKSIGLSLNPAHHKTTFDPATDVIRDLSPGDIIEAALVV 390

Query: 284  RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC---VRVRILGFRHLE 340
            RV     L++ +   P  T   V  S  ++++    +K+Y   S    VR RIL F   +
Sbjct: 391  RVQEKENLIVQL--NP-KTRGIVYHSHGSDDK----QKRYSPASVGEKVRCRILSFNLFD 443

Query: 341  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
             LA   ++ S  +      +DVKPGM+VKG + +V S G  V+    +    P  H+++ 
Sbjct: 444  RLAIVSMRKSILDKPFLGINDVKPGMLVKGVIESVMSRGVAVKIQDRIHGFVPRTHLADI 503

Query: 401  EIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 458
             + KP ++F +G+E+  RVL V+   +R+ +THKKT+VKS L  L+SYA+    +  HG 
Sbjct: 504  PVQKPQERFTIGSEIELRVLLVEPAKRRVLLTHKKTMVKSSLPFLASYAQPKLGMWIHGC 563

Query: 459  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS-IPASRRIN 517
            +  ++  GC V FYN V+G  PR+ELG+D    P+  ++VGQV+KCR++ +  P S+++ 
Sbjct: 564  VVAVKDFGCIVSFYNDVKGIIPRAELGMDESSSPTDNFYVGQVLKCRVLRTHSPESKKLA 623

Query: 518  LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 577
            LS + K  R  E +  + G +V   +  V  + + V  +  G     IP  HL+DH +  
Sbjct: 624  LS-LRKDGR-KERESFEAGKIVKVKISKVKQDGLEVIQLP-GNKPAFIPKTHLSDHPDIC 680

Query: 578  TVMKSVIKPGYEFDQLLV--LDNESSNLLLSAKYSLINSAQ---QLPSDASHIHPNSVVH 632
              + +    G   DQ L      +S   +++ K  L+N+A+   ++  D S +  N  + 
Sbjct: 681  DALLASYSEGDVIDQALTWSYSGKSRTCIVTCKPLLLNAARNKTEIVRDFSELETNMFLI 740

Query: 633  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 692
            G + + +  G FV F   + G AP++   D   +D SK Y VGQ++R+ + +VN E  R 
Sbjct: 741  GVLRHTMSYGVFVEFPNHIVGLAPKAMMSDEFVSDTSKLYEVGQTLRAKVTEVNVEKKRF 800

Query: 693  TLSLKQSCCSSTDASF-----------------MQEHFLLEEKI-----AMLQSSKHNG- 729
             +SLK S C   DA                   +Q   ++  K+     A ++++   G 
Sbjct: 801  LVSLKTSDCFQDDAXXXXXXXXXXXXXXXXXQPLQFKHVISHKVGSLVHATVRNTPGKGI 860

Query: 730  -----------------SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 772
                              E K V    +GS++   V  +   G++ S     D    I  
Sbjct: 861  ICSLPHAVDAVIPQDHVHEFKHVISHKVGSLVHATVRSTPGKGIICSLPHAVD--AVIPQ 918

Query: 773  HQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK 832
              + G + + G  I+A ++++  + + V LSLK   I+  +++ S  +  KK     A +
Sbjct: 919  DHVHGKSPKVGDSIEACVMNIDLSSKAVTLSLKPDTIEGCKKSKSKGKKGKKAVASLA-E 977

Query: 833  DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIA--- 889
            D G        V +VK  +++            A            KQ LN  SV     
Sbjct: 978  DKGK-------VLMVKSEFIL------------AQTGQGKLVYLSAKQHLNNFSVQKDAI 1018

Query: 890  ----TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD-----VGSLVQAEITEI 940
                TV    SS   GR L  L    +      K  K  + +D     VG +V A +  +
Sbjct: 1019 KIGDTVTIGDSSFVDGRFLAALVKEDKPSKKKEKERKSAAVHDTSQKLVGQIVDAVVKSV 1078

Query: 941  KPLELRLKF--GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII-AKSNKPDMK 997
            K  ++ ++   G G+ GRIH TEV+D        L   F IGQ V A++I  +  K    
Sbjct: 1079 KESQVNIEIEGGQGY-GRIHATEVSDTMKPGSYPL-EFFTIGQKVKAKVIGCRRGKRGQH 1136

Query: 998  KSF--------LWELSIKPSMLTVSEIGSKLLFEECDVS---IGQRVTGYVYKVDNEWAL 1046
             +         L ELS + S++    + S+    E +++   IGQ VT  + +   E   
Sbjct: 1137 LAVSHGHGALSLLELSTRKSVMEADSVPSEDQSSENEMNAFQIGQTVTCIINRFHKEILW 1196

Query: 1047 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106
            + +SR L+ ++  L+ +   S L+  +  F  G+     V+  + E  +L L +      
Sbjct: 1197 VHLSRSLEGKIHRLNLSKHASTLENPESYFKPGQVHRAKVVRQDNEHNMLELSM------ 1250

Query: 1107 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1166
                     +  + T    G +V  +++KIL       VQ+   L G +  T++ +I   
Sbjct: 1251 ---------SGCIATTFEVGSVVNCKVTKILENKAQ--VQLPYGLQGSMFATDIDDI--- 1296

Query: 1167 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR-SSLDGMSSTNSSDL 1225
                 Y E   +PL  ++  ++ +C + E S    G     +S+R S +   +  +  DL
Sbjct: 1297 -----YQE---NPLERFEHHKYHRCCISEAS---TGKHGASVSMRPSQVKKATPPSGYDL 1345

Query: 1226 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1285
                      +  ++DL    +V+GYV++ + KG F+ LS  L  ++LL  LS  YV+ P
Sbjct: 1346 ---------EIRTLDDLKKGQVVRGYVRHCSEKGVFVSLSSNLHGRILLKKLSAFYVKDP 1396

Query: 1286 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
               F +GKL++ +VLS++  S ++E++  + D+
Sbjct: 1397 SAVFTVGKLLSTKVLSIDKKSGKIELSSSSKDT 1429



 Score =  296 bits (757), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 226/704 (32%), Positives = 360/704 (51%), Gaps = 66/704 (9%)

Query: 1150 HLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV---------LEIS 1197
            H +G +   EL   K++  +D +   D+   + ++ +  GQ V C +         + +S
Sbjct: 1141 HGHGALSLLELSTRKSVMEADSVPSEDQSSENEMNAFQIGQTVTCIINRFHKEILWVHLS 1200

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK-HLEKI--EDLSPNM-------- 1246
            R++ G  H     R +L   +ST  +  S     PG+ H  K+  +D   NM        
Sbjct: 1201 RSLEGKIH-----RLNLSKHASTLENPES--YFKPGQVHRAKVVRQDNEHNMLELSMSGC 1253

Query: 1247 ---------IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
                     +V   V  +      + L   L   +  +++ D Y E+P + F   K    
Sbjct: 1254 IATTFEVGSVVNCKVTKILENKAQVQLPYGLQGSMFATDIDDIYQENPLERFEHHKYHRC 1313

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFI 1352
             +           V+++ S  + A+       EI  L +L  G +V G ++     G+F+
Sbjct: 1314 CISEASTGKHGASVSMRPSQVKKATPPSGYDLEIRTLDDLKKGQVVRGYVRHCSEKGVFV 1373

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            ++ ++NL G   + +LS  +V +   ++  G+ +  K+L +DK+  +I L   SS     
Sbjct: 1374 SL-SSNLHGRILLKKLSAFYVKDPSAVFTVGKLLSTKVLSIDKKSGKIELS-SSSKDTGL 1431

Query: 1413 ADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVP 1472
             D +     +   +   +     + S  + +   + + D  S+    ++    +S +  P
Sbjct: 1432 EDPVPEDQRQAGVKRKRDGTKKGKKSTEDGNDSGLGEADPLSDTEAEIITVAKKSSSDTP 1491

Query: 1473 PLEVNLDDEQPDMDN--GISQNQGHTDEAKTI-----------DEKNNRHAKK--KEKEE 1517
             L+++      D       S+  G  DE+              +E   + +KK  KE+E+
Sbjct: 1492 RLQISSGFSWGDTTTKPATSRKAGTADESDDDDDEEDEEEEEDNEPPVKTSKKDLKEEEK 1551

Query: 1518 REQEIRAAEERLL--EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIA 1575
             +++I    ER L   +  P TP++F+RLV SSPNSS  WI+YMAF L   D+EKAR+IA
Sbjct: 1552 AQEDILYKTERALMDAERTPETPEDFDRLVASSPNSSLAWIRYMAFYLHSVDIEKARAIA 1611

Query: 1576 ERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1635
            ERAL+TIN REE EKLN+WVAY NLEN YG   EE VV VF+RALQ C+P KV   L+ +
Sbjct: 1612 ERALKTINFREEQEKLNVWVAYLNLENLYGT--EEEVVAVFKRALQQCEPIKVFQQLVSI 1669

Query: 1636 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH 1694
            Y RT + + A++L   M+K+FK    VW+     L+K  + +  + ++QR+  SL +  H
Sbjct: 1670 YTRTSKIEQAEQLYETMVKRFKFDPDVWIGFGTFLMKHGKHDPARRLMQRSFKSLIQKDH 1729

Query: 1695 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1754
            +  I + A LE+++  ++RG++MFE ILS YPKRTD+WSIYLD  I+ GD    R LFER
Sbjct: 1730 VSVIVKFAQLEYRHAESERGKTMFENILSNYPKRTDIWSIYLDLTIKQGDTGTSRHLFER 1789

Query: 1755 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             I+L L  KK+KF FK++L++EK  G+E  I  VKQKA++YVES
Sbjct: 1790 VINLKLSAKKVKFFFKRFLDFEKKYGDESTINSVKQKAVDYVES 1833



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 154/338 (45%), Gaps = 51/338 (15%)

Query: 1075 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS-DKTVDISNDNMQTFIHEGDIVGGRI 1133
            ++ IG+ +   VL      K + L L P     + D   D+  D     +  GDI+   +
Sbjct: 334  KYDIGQKLVAVVLYNCPTTKSIGLSLNPAHHKTTFDPATDVIRD-----LSPGDIIEAAL 388

Query: 1134 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--FDPLSGYDEGQFVKC 1191
               +     L+VQ+ P   G V+ +            G D+ Q  + P S    G+ V+C
Sbjct: 389  VVRVQEKENLIVQLNPKTRGIVYHSH-----------GSDDKQKRYSPAS---VGEKVRC 434

Query: 1192 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1251
            ++L  +   R      +S+R S+              +D P      I D+ P M+V+G 
Sbjct: 435  RILSFNLFDRLAI---VSMRKSI--------------LDKP---FLGINDVKPGMLVKGV 474

Query: 1252 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1311
            +++V S+G  + +  ++   V  ++L+D  V+ P++ F IG  +  RVL VEP  +RV +
Sbjct: 475  IESVMSRGVAVKIQDRIHGFVPRTHLADIPVQKPQERFTIGSEIELRVLLVEPAKRRVLL 534

Query: 1312 TLKTSDSRTASQSEINNLSNL---HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1368
            T K    +T  +S +  L++     +G  + G +  V+ +G  ++  N ++ G+   +EL
Sbjct: 535  THK----KTMVKSSLPFLASYAQPKLGMWIHGCVVAVKDFGCIVSFYN-DVKGIIPRAEL 589

Query: 1369 SEDHVDNIETIYRAGEKVKVKILKV-DKEKRRISLGMK 1405
              D   +    +  G+ +K ++L+    E ++++L ++
Sbjct: 590  GMDESSSPTDNFYVGQVLKCRVLRTHSPESKKLALSLR 627



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 1326 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1385
            + + S L     +IG ++   SYG+F+   N ++VGL   + +S++ V +   +Y  G+ 
Sbjct: 727  VRDFSELETNMFLIGVLRHTMSYGVFVEFPN-HIVGLAPKAMMSDEFVSDTSKLYEVGQT 785

Query: 1386 VKVKILKVDKEKRRISLGMKSS-YFKNDA 1413
            ++ K+ +V+ EK+R  + +K+S  F++DA
Sbjct: 786  LRAKVTEVNVEKKRFLVSLKTSDCFQDDA 814


>gi|336273586|ref|XP_003351547.1| hypothetical protein SMAC_00089 [Sordaria macrospora k-hell]
 gi|380095827|emb|CCC05873.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1776

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 376/1386 (27%), Positives = 672/1386 (48%), Gaps = 161/1386 (11%)

Query: 475  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTRVSED 530
            V+   P   L +D G E    Y VG V   R++  ++      I+L  S + +P    ED
Sbjct: 469  VKQVEPEIGLYVDVGVEDVGPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFLRIED 528

Query: 531  DLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIK 585
              + +G++VSGVV+ +  NA     ++  IA G S G +P  H AD HL++    +   +
Sbjct: 529  --IPVGAVVSGVVEKMVLNAAGVGGLIVKIADGIS-GLVPEMHFADVHLQNP---EKKFR 582

Query: 586  PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETG 642
             G +   ++L  D  S  + L+ K +L+NS   LP+  ++  I       G + N+++ G
Sbjct: 583  EGLKVKARVLSTDAASRQIRLTLKKTLVNS--DLPAIQTYDEITVGQQALGTIINVLQHG 640

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
              V+F GRL GF P S+  +    D  + + VGQ+V   ++  + +  ++ +S K     
Sbjct: 641  AIVQFYGRLRGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKDPAA- 699

Query: 703  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 762
                      F LE+++A+              +   IG V+  KV +  D  V V   +
Sbjct: 700  ----------FGLEKQLAL--------------KKLQIGDVVSAKVTQKTDDDVFVELAD 735

Query: 763  HSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLKTVFIDRF 812
             S        H    +  ++ S ++            IL+  +A R + LS K + +   
Sbjct: 736  SSLKAILPVAHLTDKSVSKTQSALKKIHVNQTLSELVILEKNEARRSIILSQKPILVKAT 795

Query: 813  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDY 871
            +E          +   E +   G  + + A    V+    L   LP+        S+   
Sbjct: 796  KEGKFLTSLDGARVGEEVA---GYVRNITATAVFVQFGGKLTALLPK--------SMIPK 844

Query: 872  NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE----TETSSSKRA----KK 923
              Q  P       QS+   + ++  ++   RL++ +   +E     +T   K A    + 
Sbjct: 845  EDQDKPDFGMFKSQSITVKITSV--NNELNRLVVAVPGATEQVKRVDTKGEKLANPVDES 902

Query: 924  KSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFK 978
             +S D   +G L +A +  +K  ++ ++      GRI +++V D+   +   +     F+
Sbjct: 903  ITSLDDISIGKLTKARVVSVKDTQVNVQLADNIQGRIDVSQVYDNWEQIKDTKKPLKKFQ 962

Query: 979  IGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIG 1030
              Q V  R++    A++++  P   +S   + ELS KPS +        L F+  ++ +G
Sbjct: 963  PKQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEALSFD--NLKVG 1020

Query: 1031 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1090
                G+V  V      + +S  ++ ++  ++++ + S L    + F IG A+   V+S++
Sbjct: 1021 SSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVRVVSVD 1080

Query: 1091 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1150
             E K L L  R    G  D   +++ D     I +  I+ G+++K+      ++V++   
Sbjct: 1081 AESKRLDLSAR--SPGSED---ELTWDK----IAQDVILVGKVTKVDER--QVIVKLSET 1129

Query: 1151 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1210
            L G VH  +L +         Y+E   +P + + + + V+  V+E+ ++ +    + LS 
Sbjct: 1130 LAGPVHKVDLAD--------DYEEA--NP-AKFAKNEIVRVAVVEVDKSNK---RIRLST 1175

Query: 1211 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1270
            R S           L++ +    K + +   L    IV+G+VKNV+ KG F+ L   + A
Sbjct: 1176 RPS---------RILNSSLPVKDKEIVQHTKLEVGEIVRGFVKNVSDKGLFVTLGGNVTA 1226

Query: 1271 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1330
             V + NLSD Y++  +++F + +LV GR++SV   + R+E++LK S         +  +S
Sbjct: 1227 FVQIKNLSDAYLKYWKEQFQVDQLVKGRIVSVA--NGRIEMSLKPS-VVDKDYVPLTTIS 1283

Query: 1331 NLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1389
            +L  G  + G++++VE +G FI I+ + NL GLCH SE+S+  V +   +Y  G+KVK K
Sbjct: 1284 DLKEGQTITGRVRKVEEFGAFIDIDGSDNLSGLCHRSEMSDKAVKDARKLYEEGDKVKAK 1343

Query: 1390 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQ- 1448
            +LKVD   +RI+LG+K SYF    +       +  +EA E+    +    + ++  AVQ 
Sbjct: 1344 VLKVDATAKRINLGLKPSYF---GEQGDEDEMDVDEEAAEDSEGDDSDEDMSDADGAVQI 1400

Query: 1449 ----DMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTD-EAKTID 1503
                +++ +SED       ++   + V  LE    D    +++G   +    D EA    
Sbjct: 1401 TGTDNIEEDSEDEDEGSDVEMADASDVKGLEAGGFDWSASLEDGEKADASAADLEA---- 1456

Query: 1504 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1563
                    KK+K  RE +I   +   L+ + P+T  ++ERL+   P+SS +WI YMAF +
Sbjct: 1457 ------LAKKKKARREPQITVDKTASLDVNGPQTASDYERLLLGQPDSSQLWIAYMAFQM 1510

Query: 1564 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1623
             ++D+  AR +AERA++TINI+EE EKLN+W+AY NLE  YGN  EE V +VF+RA  Y 
Sbjct: 1511 QVSDLAAARQVAERAIKTINIKEEIEKLNVWIAYLNLEVAYGN--EETVDEVFKRACTYN 1568

Query: 1624 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRRVQRL--LKQQQEGVQA 1680
            D ++V+  L  +Y ++ + K AD+L  K++K+F + S +VW+     L       +  +A
Sbjct: 1569 DKQEVYERLASIYIQSGKRKEADDLFEKIVKEFGYKSPEVWVNYAHFLHTTMHSPDRARA 1628

Query: 1681 VVQRA--LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYL 1736
            +++RA  +L    H +I  + + A LEF+  NG  ++GR++FE +L+ YPK+ DLW+  +
Sbjct: 1629 LLKRATQVLGKETHLYIALLPKFAALEFRSPNGDKEQGRTLFENLLATYPKKFDLWNQLI 1688

Query: 1737 DQEIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            D E    D D  +IR LF+R   +  L P++ K  F+++ ++E+  G+++  E V  KA 
Sbjct: 1689 DLETSAADADKGVIRDLFDRGSKVKGLKPRQAKAWFRRWAQWEEKNGDKKSREKVSAKAQ 1748

Query: 1794 EYVEST 1799
            E+  + 
Sbjct: 1749 EWARTA 1754



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 194/748 (25%), Positives = 324/748 (43%), Gaps = 85/748 (11%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN--------------EDNLLP 50
           G V  +N  D+ + LP  + G      A+   L   +EA+               D  L 
Sbjct: 160 GSVCAINALDIAVALPNNIIGHVPIT-AISAPLTKRLEASAGDDDAEESDDENENDVDLE 218

Query: 51  TIFHVGQLVSCIVLQLDDDKKE----IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 106
           +IF +GQ V   V+   D+         KR I LSL+ SL   G++ + V     + A +
Sbjct: 219 SIFQIGQYVRAYVVSTVDEASTHTPGKAKRHIELSLQPSLANTGMAEQDVVVNSTVMAAI 278

Query: 107 KSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLS 163
            S+EDHGY++   +      GFL R  + ++   + ++PG +L  +V    +  K+V LS
Sbjct: 279 ASVEDHGYVMDIEIADSKLQGFLARKQVDKSIPQEALQPGAVLLCMVTKSAKG-KIVQLS 337

Query: 164 SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 223
           +  +T+           +ID  +PG      V  +  +G++   +     T D+ H    
Sbjct: 338 TLGETIGNVENVPAAATTIDTFLPGTAADVLVSEVSNHGIVGKIMGSLDVTADLVHSGAG 397

Query: 224 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGL---------TLNPYLLHNRAPP----SH 270
               + ++ Y    ++ AR++   PT++   L         +L P        P      
Sbjct: 398 PDGVDLEDTYKVGSRLKARVICNFPTAKNPKLGISVLKHVTSLKPKTASKDEQPVVPLQA 457

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 330
           +    I ++  V +V+  +GL +D           V + DV           YK GS   
Sbjct: 458 LPHSTIVEKCTVKQVEPEIGLYVD-----------VGVEDVGP---------YKVGSVHA 497

Query: 331 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV-----IAVDSFGAIVQFP 385
            R++G+   +G+    L+ S  E       D+  G VV G V      A    G IV+  
Sbjct: 498 GRVVGYNAFDGMYLISLEKSVLEQPFLRIEDIPVGAVVSGVVEKMVLNAAGVGGLIVKIA 557

Query: 386 GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAIL 443
            G+  L P  H ++  +  P KKF+ G ++  RVL     S++I +T KKTLV S L  +
Sbjct: 558 DGISGLVPEMHFADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLTLKKTLVNSDLPAI 617

Query: 444 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 503
            +Y E T      G I  + +HG  V+FY  ++GF P SE+      +P   + VGQ V 
Sbjct: 618 QTYDEITVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIHDPKEHFRVGQTVS 677

Query: 504 CRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKG 559
             ++S  P + ++ +S         E  L    +++G +VS  V   T + V V  +A  
Sbjct: 678 IYVISFDPDAAKLIVSCKDPAAFGLEKQLALKKLQIGDVVSAKVTQKTDDDVFVE-LADS 736

Query: 560 YSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAKYSLINS 614
             K  +P  HL D  +  +  +S +K         +L++L+ NE+  +++LS K  L+ +
Sbjct: 737 SLKAILPVAHLTD--KSVSKTQSALKKIHVNQTLSELVILEKNEARRSIILSQKPILVKA 794

Query: 615 AQQ---LPS-DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS--KAVDGQRADL 668
            ++   L S D + +     V GYV NI  T  FV+F G+LT   P+S     D  + D 
Sbjct: 795 TKEGKFLTSLDGARV--GEEVAGYVRNITATAVFVQFGGKLTALLPKSMIPKEDQDKPDF 852

Query: 669 SKTYYVGQSVRSNILDVNSETGRITLSL 696
               +  QS+   I  VN+E  R+ +++
Sbjct: 853 G--MFKSQSITVKITSVNNELNRLVVAV 878



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 4/176 (2%)

Query: 356  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
            +  H+ ++ G +V+G V  V   G  V   G V A   + ++S+  +    ++F+V   +
Sbjct: 1192 IVQHTKLEVGEIVRGFVKNVSDKGLFVTLGGNVTAFVQIKNLSDAYLKYWKEQFQVDQLV 1251

Query: 416  VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YN 473
              R++ V + RI ++ K ++V      L++ ++  +     G + K+E+ G F+     +
Sbjct: 1252 KGRIVSVANGRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVRKVEEFGAFIDIDGSD 1311

Query: 474  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 529
             + G   RSE+      +   +Y  G  VK +++     ++RINL   +KP+   E
Sbjct: 1312 NLSGLCHRSEMSDKAVKDARKLYEEGDKVKAKVLKVDATAKRINLG--LKPSYFGE 1365


>gi|410076380|ref|XP_003955772.1| hypothetical protein KAFR_0B03400 [Kazachstania africana CBS 2517]
 gi|372462355|emb|CCF56637.1| hypothetical protein KAFR_0B03400 [Kazachstania africana CBS 2517]
          Length = 1715

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 353/1220 (28%), Positives = 584/1220 (47%), Gaps = 184/1220 (15%)

Query: 641  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
            +GC V F G + GF P ++  +       +   +GQ+V   +L V+ E  RI      SC
Sbjct: 616  SGCVVSFFGGIRGFLPNAEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARIL----TSC 671

Query: 701  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
              S++ S  Q+                           +I +++ GK      F  VV+ 
Sbjct: 672  KISSEQSQEQKD--------------------------VITNLVPGKT-----FIDVVAV 700

Query: 761  EEHSD----------VYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLV 800
            E+  D          + G I    L+ + +E           G+     ++D     ++ 
Sbjct: 701  EKTKDSIIVEMSKTGLRGVIYVGHLSDSRIEQNRAALKKITIGAEFNGLVIDKDVRTQVF 760

Query: 801  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV--NAIVEIVKENYLVLSLPE 858
            +L+LK   I   +      Q  + K   +A    G  +++  N +       ++ L LP 
Sbjct: 761  NLTLKKSLIKAAKNNTLPTQYSEIKSVSKAEALPGYVKSISNNGVFVAFNGKFVGLVLPS 820

Query: 859  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 918
            Y          D +  K     F   QSV A +  L +     R LL LKA  E      
Sbjct: 821  Y-----AVDSRDIDISKI----FYVNQSVTAYL--LRTDDKNERFLLTLKAQKE------ 863

Query: 919  KRAKKKSSYDV----------------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 962
            + AKK +S ++                G +V A+I  +K  +L +      HGR+ + E+
Sbjct: 864  ETAKKTTSSEIVNPIDPAIQSLNDLTTGKVVSAKIKSVKKNQLNIVIADNIHGRVDVAEI 923

Query: 963  NDDKSNVVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSML 1011
             DD  ++ +     S FK  QTV  +II   N    K         K  + ELS+KPS+L
Sbjct: 924  FDDLKDIKDRKQPLSAFKKDQTVKVKIIGYHNIKSHKFLPITHQVSKGSVLELSMKPSLL 983

Query: 1012 TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1069
               +  SK + E   +++G+ + GYV  +  +N W  LTIS  LKA+L + D A + +EL
Sbjct: 984  NSEDTFSKTIKE---INVGEELVGYVNNFASNNLW--LTISPVLKARLSVFDLAGDNTEL 1038

Query: 1070 QE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1128
             E  +  F +G A+   V SI+ E   +          +++K   + + N    I  G+ 
Sbjct: 1039 SENVEDSFPLGSAIPVKVTSIDSEHGFIT---------VANKYHTMKDINS---IKVGES 1086

Query: 1129 VGGRISKILSGVGGLVVQIGPHLYGRVHFTE-LKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            +  RI+KI      +++ +G  L G    T+ L +  V+   + +D+            Q
Sbjct: 1087 LPARIAKIFEKY--ILLDLGNKLTGMAFATDALDDFSVTLQDAFHDKV----------NQ 1134

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             V   ++ +    +    V LSLR+               D  TP   +   +DL    I
Sbjct: 1135 IVMATIVSLDVDSK---KVNLSLRTK--------------DAKTPT--ITSHDDLKKGDI 1175

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V   VK+V+ KG F+ LSR L+A V ++ LSD Y++  +K +   + V G+V+  +    
Sbjct: 1176 VHALVKSVSDKGIFLHLSRTLEAFVPVTMLSDSYLKEWKKFYKSMQHVVGKVVKCDE-DA 1234

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVS 1366
            R+ +TL+ S+        + N  ++ VGD+V G +K V  +G+F+ ++NT N+ GL H+S
Sbjct: 1235 RILITLRESEV-NGELKVLKNYDDIEVGDVVSGSVKNVTDFGVFVKLDNTVNVSGLAHIS 1293

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEESD 1425
            E+++   ++I  ++  G++VK  +LK + EK+++SL +K+S F     +N +  S++E  
Sbjct: 1294 EIADKKPEDISALFGPGDRVKTIVLKTNPEKKQLSLSLKASRFTTAQVENEEEHSDDEMH 1353

Query: 1426 EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM 1485
            E I E  + N  S  E      +    ++ + G  +    +  AS+      LD  Q   
Sbjct: 1354 EQI-EFDNANEESEDEEQEDESEKAKPQTTNNGLSLSTGFDWTASI------LDQAQESE 1406

Query: 1486 DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD--APRTPDEFER 1543
             +  SQ++  T+               K+ + R++  R  E++ ++ +  AP +  +FER
Sbjct: 1407 ASEDSQDEDFTE--------------TKKHKNRKKRARITEDKTIDINTRAPESVSDFER 1452

Query: 1544 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1603
            ++  +PNSS VW+ YMAF L +++VEKAR IAERAL+TIN R+E EKLNIW+A  NLEN 
Sbjct: 1453 MIMGNPNSSIVWMNYMAFQLQLSEVEKAREIAERALKTINFRDEAEKLNIWIAMLNLENT 1512

Query: 1604 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKV 1662
            +G    + +  VF+RA QY D   +H  LL +Y+ +E+     EL     KKF      +
Sbjct: 1513 FGT--SDTLEDVFKRACQYMDSFTIHNKLLTIYQISEKYNQTSELYKSAAKKFGSEKVSI 1570

Query: 1663 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1721
            W+     L+ Q Q+E  ++++ +AL  LP+  HI+ + + A LEF  G A+RGRS+FEG+
Sbjct: 1571 WISWGDFLITQKQEEEARSILSKALKVLPKRDHIELVRKFAQLEFTKGDAERGRSLFEGL 1630

Query: 1722 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1781
            +++ PKR DLW++Y+DQEI+L +   +  L ER I   +  K+ KF F K+L++E++ G+
Sbjct: 1631 IADAPKRIDLWNVYIDQEIKLKEKKKVEELLERVILKKITKKQAKFFFNKWLQFEEAQGD 1690

Query: 1782 EERIEYVKQKAMEYVESTLA 1801
             + IEYVK KA EYVE + A
Sbjct: 1691 SKAIEYVKAKATEYVEKSKA 1710



 Score =  166 bits (421), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 199/761 (26%), Positives = 337/761 (44%), Gaps = 92/761 (12%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---------------DNEIEAN 44
           L G V+++   D+ I    G+ G   L R +D    IL               D E + +
Sbjct: 125 LLGQVSKITRGDICITCSDGISGYVNLTRISDQFTTILEDLDDDMESDDETKNDEEYDLS 184

Query: 45  EDNL--------LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKG 90
           +D          LP +   F +GQ + C ++    L+   K+  KR+I  ++  +L+   
Sbjct: 185 DDEEGKERKAAELPDLNDYFKLGQWLRCSIVSNSTLEPKSKQNNKRRIEFTIEPTLV-NA 243

Query: 91  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV 150
           +S E +Q+ M L   VKSIEDHG IL  G+   TGF+ + ++     + V   + L  V 
Sbjct: 244 MSEEDLQKFMPLQCAVKSIEDHGAILDIGIDGMTGFITKKDVPNFDKLLV-GSVFLGNVY 302

Query: 151 RSIDRTRKV-VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 209
           +  +R+  V +  ++  + +S+         S+D +VPG +V    Q + + G+      
Sbjct: 303 KKTERSVNVNLDFANKKNIISQIS-------SVDAIVPGQLVDLLCQQVSQYGISGKVFG 355

Query: 210 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL--FVDPT-SRAVGLTLNPYL----- 261
              G +   HL   F     K+ +     V ARIL   +D    + + L+  P++     
Sbjct: 356 LVPGFIGSSHLLK-FKEEELKHSFAIGSNVRARILASLIDGNGDKTLILSTLPHIQSLET 414

Query: 262 -LHNRAPPSHVKVGDIYDQSKVVRVDRG-LGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 319
            L   +      +G I++ S V   D   L L LD             +  V   ++ KL
Sbjct: 415 DLKEISALDAFPIGYIFENSIVKGRDSDYLYLALDEDR----------LGKVHRSKIGKL 464

Query: 320 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG-MVVKGKVIAVDSF 378
           E        +R R+LG+  ++ +    +  +  +       D+  G ++   ++  V S 
Sbjct: 465 ESI----DNLRARVLGYNSVDKIYELAVDPNVLKMQYIRTKDIPAGELLAACEIETVSSS 520

Query: 379 GAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV 436
           G  ++   G   A  P  H+S+  +V P +KFK+G+++  RVL V  + R+ +T KK+LV
Sbjct: 521 GIQLKILNGQFTASVPPLHISDTRLVYPERKFKIGSKVKGRVLTVDQRGRVFMTLKKSLV 580

Query: 437 K---SKLAILSSYAEA----TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 489
                +  I+SS+A A     +   T   +      GC V F+ G++GF P +E+     
Sbjct: 581 NIDTEETPIVSSFALAQEVKNNNKKTVATVQSFRPSGCVVSFFGGIRGFLPNAEISEVFV 640

Query: 490 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG--VVDVV- 546
             P     +GQ V  +++       RI  S  +   +  E   V + +LV G   +DVV 
Sbjct: 641 KRPEEHLRLGQTVSVKLLQVDEEKARILTSCKISSEQSQEQKDV-ITNLVPGKTFIDVVA 699

Query: 547 ---TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSN 602
              T ++++V +   G  +G I   HL+D  +E        I  G EF+ L++  +  + 
Sbjct: 700 VEKTKDSIIVEMSKTGL-RGVIYVGHLSDSRIEQNRAALKKITIGAEFNGLVIDKDVRTQ 758

Query: 603 LL-LSAKYSLINSAQQ--LPSDASHIHPNS---VVHGYVCNIIETGCFVRFLGRLTGFAP 656
           +  L+ K SLI +A+   LP+  S I   S    + GYV +I   G FV F G+  G   
Sbjct: 759 VFNLTLKKSLIKAAKNNTLPTQYSEIKSVSKAEALPGYVKSISNNGVFVAFNGKFVGLVL 818

Query: 657 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            S AVD +  D+SK +YV QSV + +L  + +  R  L+LK
Sbjct: 819 PSYAVDSRDIDISKIFYVNQSVTAYLLRTDDKNERFLLTLK 859



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 13/262 (4%)

Query: 459  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH--VGQVVKCRIMSSIPASRRI 516
            I KI +    +   N + G A  ++   D        +H  V Q+V   I+S    S+++
Sbjct: 1091 IAKIFEKYILLDLGNKLTGMAFATDALDDFSVTLQDAFHDKVNQIVMATIVSLDVDSKKV 1150

Query: 517  NLSFMMK----PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 572
            NLS   K    PT  S DDL K G +V  +V  V+   + +++      +  +P   L+D
Sbjct: 1151 NLSLRTKDAKTPTITSHDDLKK-GDIVHALVKSVSDKGIFLHL--SRTLEAFVPVTMLSD 1207

Query: 573  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 632
               +    K   K        +V  +E + +L++ + S +N   ++  +   I    VV 
Sbjct: 1208 S--YLKEWKKFYKSMQHVVGKVVKCDEDARILITLRESEVNGELKVLKNYDDIEVGDVVS 1265

Query: 633  GYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
            G V N+ + G FV+      ++G A  S+  D +  D+S  +  G  V++ +L  N E  
Sbjct: 1266 GSVKNVTDFGVFVKLDNTVNVSGLAHISEIADKKPEDISALFGPGDRVKTIVLKTNPEKK 1325

Query: 691  RITLSLKQSCCSSTDASFMQEH 712
            +++LSLK S  ++      +EH
Sbjct: 1326 QLSLSLKASRFTTAQVENEEEH 1347



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 41/179 (22%)

Query: 1252 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1310
            ++ V+S G  + +L+ +  A V   ++SD  +  PE++F IG  V GRVL+V+    RV 
Sbjct: 514  IETVSSSGIQLKILNGQFTASVPPLHISDTRLVYPERKFKIGSKVKGRVLTVDQRG-RVF 572

Query: 1311 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN------------ 1358
            +TLK S            L N+   +  I     V S+ L   ++N N            
Sbjct: 573  MTLKKS------------LVNIDTEETPI-----VSSFALAQEVKNNNKKTVATVQSFRP 615

Query: 1359 ----------LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
                      + G    +E+SE  V   E   R G+ V VK+L+VD+EK RI    K S
Sbjct: 616  SGCVVSFFGGIRGFLPNAEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARILTSCKIS 674



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 19/133 (14%)

Query: 7    VAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFH--VGQLVSCIVL 64
            +A++ EK +++ L   L G+A A DALD              L   FH  V Q+V   ++
Sbjct: 1091 IAKIFEKYILLDLGNKLTGMAFATDALDDF---------SVTLQDAFHDKVNQIVMATIV 1141

Query: 65   QLDDDKKEIGKRKIWLSLRL--SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 122
             LD D K     K+ LSLR   +      S + +++G ++ A VKS+ D G  LH    +
Sbjct: 1142 SLDVDSK-----KVNLSLRTKDAKTPTITSHDDLKKGDIVHALVKSVSDKGIFLHLS-RT 1195

Query: 123  FTGFLPRNNLAEN 135
               F+P   L+++
Sbjct: 1196 LEAFVPVTMLSDS 1208



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 206/963 (21%), Positives = 380/963 (39%), Gaps = 177/963 (18%)

Query: 148  GVVRSIDRTR----------KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 197
            G + SID  R          K+  L+ DP+ +     +     + D+    ++ +  +++
Sbjct: 462  GKLESIDNLRARVLGYNSVDKIYELAVDPNVLKMQYIR-----TKDIPAGELLAACEIET 516

Query: 198  ILENGVMLSFLT-YFTGTVDIFHLQNT---FPTTNWKNDYNQHKKVNARILFVDPTSRAV 253
            +  +G+ L  L   FT +V   H+ +T   +P   +K       KV  R+L VD   R V
Sbjct: 517  VSSSGIQLKILNGQFTASVPPLHISDTRLVYPERKFK----IGSKVKGRVLTVDQRGR-V 571

Query: 254  GLTLNPYLLH---NRAP--PSHVKVGDIYDQSK----VVRVDRGLGLLLDIPSTPVSTPA 304
             +TL   L++      P   S     ++ + +K     V+  R  G ++           
Sbjct: 572  FMTLKKSLVNIDTEETPIVSSFALAQEVKNNNKKTVATVQSFRPSGCVVSFFG---GIRG 628

Query: 305  YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
            ++  ++++E  V++ E+  + G  V V++L     +       K S+ +       DV  
Sbjct: 629  FLPNAEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARILTSCKISSEQSQ--EQKDVIT 686

Query: 365  GMVVKGK----VIAVDSF--GAIVQFP-GGVKALCPLPHMSEFEIVKPG---KKFKVGAE 414
             +V  GK    V+AV+      IV+    G++ +  + H+S+  I +     KK  +GAE
Sbjct: 687  NLV-PGKTFIDVVAVEKTKDSIIVEMSKTGLRGVIYVGHLSDSRIEQNRAALKKITIGAE 745

Query: 415  LVFRVLG--VKSKRITVTHKKTLVKSKL--AILSSYAE---ATDRLITHGWITKIEKHGC 467
                V+   V+++   +T KK+L+K+     + + Y+E    +      G++  I  +G 
Sbjct: 746  FNGLVIDKDVRTQVFNLTLKKSLIKAAKNNTLPTQYSEIKSVSKAEALPGYVKSISNNGV 805

Query: 468  FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF------M 521
            FV F     G    S        + S +++V Q V   ++ +   + R  L+        
Sbjct: 806  FVAFNGKFVGLVLPSYAVDSRDIDISKIFYVNQSVTAYLLRTDDKNERFLLTLKAQKEET 865

Query: 522  MKPTRVSE------------DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 569
             K T  SE            +DL   G +VS  +  V  N + + VIA     G +    
Sbjct: 866  AKKTTSSEIVNPIDPAIQSLNDLT-TGKVVSAKIKSVKKNQLNI-VIADNIH-GRVDVAE 922

Query: 570  LADHLEHATVMKSVIKPGYEFDQLLVLD-------------------NESSNLLLSAKYS 610
            + D L+     K  +   ++ DQ + +                    ++ S L LS K S
Sbjct: 923  IFDDLKDIKDRKQPL-SAFKKDQTVKVKIIGYHNIKSHKFLPITHQVSKGSVLELSMKPS 981

Query: 611  LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR----FLGRLTGFAPRSKAVDGQRA 666
            L+NS          I+    + GYV N      ++        RL+ F      + G   
Sbjct: 982  LLNSEDTFSKTIKEINVGEELVGYVNNFASNNLWLTISPVLKARLSVF-----DLAGDNT 1036

Query: 667  DLSK----TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 722
            +LS+    ++ +G ++   +  ++SE G IT++ K       ++  + E   L  +IA  
Sbjct: 1037 ELSENVEDSFPLGSAIPVKVTSIDSEHGFITVANKYHTMKDINSIKVGES--LPARIA-- 1092

Query: 723  QSSKHNGSELKWVEGFI---IGSVIEGKVHES---NDFGVVVSFEEHSDVYGFITHHQLA 776
                      K  E +I   +G+ + G    +   +DF V +    H  V      +Q+ 
Sbjct: 1093 ----------KIFEKYILLDLGNKLTGMAFATDALDDFSVTLQDAFHDKV------NQIV 1136

Query: 777  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 836
             AT+ S        LDV    + V+LSL+T                 K     +  DL  
Sbjct: 1137 MATIVS--------LDV--DSKKVNLSLRT--------------KDAKTPTITSHDDLKK 1172

Query: 837  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPS 896
               V+A+V+ V +  + L L     +    ++   +  K  +K + + Q V+  V+    
Sbjct: 1173 GDIVHALVKSVSDKGIFLHLSRTLEAFVPVTMLSDSYLKEWKKFYKSMQHVVGKVVKCDE 1232

Query: 897  SSTAGRLLLLLKAISETETSSS-KRAKKKSSYDVGSLVQAEITEIKPLELRLKFG--IGF 953
             +   R+L+ L+   E+E +   K  K     +VG +V   +  +    + +K    +  
Sbjct: 1233 DA---RILITLR---ESEVNGELKVLKNYDDIEVGDVVSGSVKNVTDFGVFVKLDNTVNV 1286

Query: 954  HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1013
             G  HI+E+ D K   +  LF     G  V   I+ K+N P+ K+     LS+K S  T 
Sbjct: 1287 SGLAHISEIADKKPEDISALFGP---GDRVKT-IVLKTN-PEKKQ---LSLSLKASRFTT 1338

Query: 1014 SEI 1016
            +++
Sbjct: 1339 AQV 1341


>gi|348579013|ref|XP_003475276.1| PREDICTED: protein RRP5 homolog [Cavia porcellus]
          Length = 1841

 Score =  388 bits (997), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 375/1396 (26%), Positives = 646/1396 (46%), Gaps = 157/1396 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 61   MRILGCVKEVNELELVIGLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLKDLLRLPELF 120

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
             +G LV C+V  +     E GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 121  SLGMLVRCVVSSVSIT--EQGKKSVKLSLNPRNVNRVLSAEALKPGMLLTGTVSSLEDHG 178

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP+    E     N G  +K G  L  ++  +     VV LS +   
Sbjct: 179  YLVDIGVEGTRAFLPQQKAQEYIRQKNKGAKLKVGQYLNCIIEEMKGNGGVVGLSIEQSE 238

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            +S  +    +  +++ L+PG+++  +VQ + + G+ L+F T+FTG VD  HL        
Sbjct: 239  ISTAIATQEQNWNLNNLLPGLVLQAQVQKVTQFGLTLNFFTFFTGLVDFMHLD-----PK 293

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRV 285
                Y  ++ V A +L V P +RAV L+L P  L    P + +    +G +     V   
Sbjct: 294  KVGMYFSNQTVRACVLCVHPRTRAVRLSLRPIFLQPGRPLTRLSCQHLGAVLQDVPVQGF 353

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 354  FNKAGATFRLKDGAL---AYARLSHLSDSKNGFRPEAFKPGNTHKCRIIDYSQMDELALL 410

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D+K G V+KG V+ +  FG +V+    ++ L P  H+++  +  P
Sbjct: 411  SLRTSVIEAQYLKYHDIKTGAVIKGTVMTIKPFGMLVKVGEQMRGLVPAMHLADIPMKNP 470

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ VG E+  RVL    ++K++ +T KKTLV SKL +++ Y +A   L THG I +++
Sbjct: 471  EKKYHVGDEVKCRVLLCDPEAKKLILTLKKTLVTSKLPVITCYEDAKPGLQTHGAILRVK 530

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL      +P  +++VGQVVK  +++  P+  R+ LSF + 
Sbjct: 531  DYGCIVKFYNDVQGLVPKHELSDQHIPDPEKVFYVGQVVKVAVLNCEPSRERMLLSFKLL 590

Query: 523  -KPTRVS--------EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
              P R +            + +G LV   +   T + + V V+        +PT HL+DH
Sbjct: 591  SDPERKNGSVERRQKSKKAISVGQLVDVKILEKTKDGLHVAVLPHNIP-AFLPTPHLSDH 649

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q+P   S I P  ++
Sbjct: 650  VTNGPLLYHWLQAGDTLHRVLCLSQSEKQVLLCRKPALVSAVEDGQVPKSFSEIQPGMLL 709

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G FV+F   L+G AP++   D    + S  +  GQ+V   +  V+ E  R
Sbjct: 710  VGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTNPSDHFVEGQTVVVKVTKVDEEKQR 769

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE----LKWVEGFIIGSVIEGK 747
            + +SL+ S C    +S      L +    +       GS+    ++ +     G V++  
Sbjct: 770  MLVSLRLSDCRLGSSSSTSLLLLSQCLEELHGVRSLMGSQDSVLIQTLAKMTPGMVLDLV 829

Query: 748  VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            V E   D  VV+S     D+    + +  AG  VE+G   +A IL V   E  V +SL  
Sbjct: 830  VQEVLEDGSVVLSGGPVPDLVLRASRYHRAGQEVEAGQKRKAVILHVDMLELEVHVSLLK 889

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
              +        NR+A+K K+ R+            A V+ ++E++ + SL E  H + ++
Sbjct: 890  ELV--------NRKARKLKKGRK----------YQATVQHLEESFALASLVETGHLVAFS 931

Query: 867  SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST----------AGRLLLLLKAISET-- 913
              S  N T +F  ++   GQ V   +       T          A R+L   +  SET  
Sbjct: 932  LASHLNDTFRFDSEKLQVGQGVCLVLKTTEPGVTGLLLAVVGPAAQRVLRQTRKDSETVD 991

Query: 914  -----ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 968
                 + +     +++ +  +G  V   +  +KP  + +    G  G IH + + DD   
Sbjct: 992  DDEEGDPALVTGLRRQHTLALGDTVTGTVKSVKPTHVVVTLEGGLVGCIHASHILDD--- 1048

Query: 969  VVENLF--SNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPSML----TV 1013
            VVE     +  K+GQ+VTAR+I     K++K  P     F+    ELSI+PS L    T 
Sbjct: 1049 VVEGSMPTATLKVGQSVTARVIGGRDVKTSKFLPISHPRFIRTIPELSIRPSELEQGHTA 1108

Query: 1014 SEIGSKLLFEECD-VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1070
             +  S    E+ +    GQ VT ++  Y V  +W  + I+  ++ ++ +L ++     L+
Sbjct: 1109 LDTYSASPGEKIEHYQAGQTVTCFLKKYNVVKKWLEVDIAPDIRGRIPLLLASLSFKVLK 1168

Query: 1071 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG 1130
               ++F IG+A+   V+  +  +  L L L             I    ++    +G++  
Sbjct: 1169 HPDKKFQIGQALRATVVGPDSSRAFLCLSL-------------IGPHKLE----KGEVAM 1211

Query: 1131 GRISKILSGVGGLVVQIGPH--LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1188
            GR           VV++ PH  L     F     + V      Y E    PL  +   + 
Sbjct: 1212 GR-----------VVKVTPHKGLTVAFPFGRTGTVSVFHMSDSYSE---TPLEDFMPQKV 1257

Query: 1189 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1248
            V+C VL  +  +     + LSLR     +S TN  +  + V+ P   ++ ++D+    ++
Sbjct: 1258 VRCYVLSTADHM-----LTLSLR-----LSRTN-PETKSKVEDP--EIDSMQDVKAGQLL 1304

Query: 1249 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVLSV 1302
            +GYV+++   G  + L   +   V L+  S     SP K+       P G+L+  +VL +
Sbjct: 1305 RGYVQSIEPSGVLLGLGPSV---VGLAQFSHVSQSSPPKKDLYRKYLPEGRLLTAKVLRL 1361

Query: 1303 EPLSKRVEVTLKTSDS 1318
                  VE++   +D+
Sbjct: 1362 NHNKNLVELSFLPTDT 1377



 Score =  288 bits (736), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/328 (45%), Positives = 222/328 (67%), Gaps = 6/328 (1%)

Query: 1475 EVNLDDEQPDMDNGISQNQGHTDEA--KTIDEKNNRHAKKKEKEEREQEIRAAEERLLE- 1531
            +V LD   P +      +    DE   + + +K ++  ++ EK++ E+E+   EE L++ 
Sbjct: 1509 DVGLDSLTPALPPRGESSDSEEDEKPHQAMHKKKSKKERELEKQQSEKELSRIEEALMDP 1568

Query: 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1591
            +  P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1569 RRQPGSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1628

Query: 1592 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1651
            N+WVA  NLEN YG+P  E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1629 NVWVALLNLENMYGSP--ESLSKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNR 1686

Query: 1652 MIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710
            M+K+F+    VW++    LL++ Q G  + V+QRAL  LP  +H+  I++ A LEF+ G 
Sbjct: 1687 MLKRFRQEKAVWVKYGAFLLRRSQAGACRRVLQRALECLPTKEHMDVITKFAQLEFQLGD 1746

Query: 1711 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1770
            A+R +++FE +LS YPKRTD+WS+++D  I+      IR LFER I LSL PKKMKF FK
Sbjct: 1747 AERAKAIFENMLSTYPKRTDVWSVFIDLTIKHSSQKEIRDLFERVIHLSLAPKKMKFFFK 1806

Query: 1771 KYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            +YL+YEK  G E+ +  VK KA+EYVE+
Sbjct: 1807 RYLDYEKQHGTEKDVLAVKAKALEYVEA 1834



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 142/328 (43%), Gaps = 43/328 (13%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1139
            + V   VL ++   + +RL LRP           +S  ++   + +  + G       + 
Sbjct: 302  QTVRACVLCVHPRTRAVRLSLRPIFLQPGRPLTRLSCQHLGAVLQDVPVQG-----FFNK 356

Query: 1140 VGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
             G    ++ G   Y R+ H ++ KN        G+    F P      G   KC++++ S
Sbjct: 357  AGATFRLKDGALAYARLSHLSDSKN--------GFRPEAFKP------GNTHKCRIIDYS 402

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1257
            +         LSLR+S+                   ++L K  D+    +++G V  +  
Sbjct: 403  QMDELAL---LSLRTSV----------------IEAQYL-KYHDIKTGAVIKGTVMTIKP 442

Query: 1258 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
             G  + +  ++   V   +L+D  +++PEK++ +G  V  RVL  +P +K++ +TLK + 
Sbjct: 443  FGMLVKVGEQMRGLVPAMHLADIPMKNPEKKYHVGDEVKCRVLLCDPEAKKLILTLKKTL 502

Query: 1318 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
              T+    I    +   G    G I RV+ YG  +   N ++ GL    ELS+ H+ + E
Sbjct: 503  V-TSKLPVITCYEDAKPGLQTHGAILRVKDYGCIVKFYN-DVQGLVPKHELSDQHIPDPE 560

Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             ++  G+ VKV +L  +  + R+ L  K
Sbjct: 561  KVFYVGQVVKVAVLNCEPSRERMLLSFK 588



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 141/698 (20%), Positives = 260/698 (37%), Gaps = 104/698 (14%)

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETG 690
            HGY+ +I   G           F P+ KA +  R  +      VGQ +   I ++    G
Sbjct: 177  HGYLVDIGVEGT--------RAFLPQQKAQEYIRQKNKGAKLKVGQYLNCIIEEMKGNGG 228

Query: 691  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW-VEGFIIGSVIEGKVH 749
             + LS++QS  S+  A+                       E  W +   + G V++ +V 
Sbjct: 229  VVGLSIEQSEISTAIAT----------------------QEQNWNLNNLLPGLVLQAQVQ 266

Query: 750  ESNDFGVVVSFEEHSDVYGFITHHQLAGATVE---SGSVIQAAILDVAKAERLVDLSLKT 806
            +   FG+ ++F   +   G +    L    V    S   ++A +L V    R V LSL+ 
Sbjct: 267  KVTQFGLTLNF--FTFFTGLVDFMHLDPKKVGMYFSNQTVRACVLCVHPRTRAVRLSLRP 324

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
            +F+   R              R + + LG       +     +      L   + ++ YA
Sbjct: 325  IFLQPGRPLT-----------RLSCQHLGAVLQDVPVQGFFNKAGATFRL--KDGALAYA 371

Query: 867  SVSDYNTQK--FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK 924
             +S  +  K  F  + F  G +    ++     S    L LL    S  E    K    K
Sbjct: 372  RLSHLSDSKNGFRPEAFKPGNTHKCRII---DYSQMDELALLSLRTSVIEAQYLKYHDIK 428

Query: 925  SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 984
            +    G++++  +  IKP  + +K G    G +    + D     ++N    + +G  V 
Sbjct: 429  T----GAVIKGTVMTIKPFGMLVKVGEQMRGLVPAMHLADIP---MKNPEKKYHVGDEVK 481

Query: 985  ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC--DVSIGQRVTGYVYKVDN 1042
             R++     P+ KK  L   ++K +++T     SKL    C  D   G +  G + +V +
Sbjct: 482  CRVLL--CDPEAKKLIL---TLKKTLVT-----SKLPVITCYEDAKPGLQTHGAILRVKD 531

Query: 1043 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1102
               ++     +  Q  +         + + ++ F++G+ V   VL+    ++ + L  + 
Sbjct: 532  YGCIVKFYNDV--QGLVPKHELSDQHIPDPEKVFYVGQVVKVAVLNCEPSRERMLLSFKL 589

Query: 1103 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELK 1161
              D              +  I  G +V  +I  +     GL V + PH +   +    L 
Sbjct: 590  LSDPERKNGSVERRQKSKKAISVGQLVDVKI--LEKTKDGLHVAVLPHNIPAFLPTPHLS 647

Query: 1162 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1221
            +   + PL       +  L   D                  T H  L L  S   +    
Sbjct: 648  DHVTNGPLL------YHWLQAGD------------------TLHRVLCLSQSEKQVLLCR 683

Query: 1222 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1281
               L + V+  G+  +   ++ P M++ G+VK++   G F+     L      + +SD +
Sbjct: 684  KPALVSAVED-GQVPKSFSEIQPGMLLVGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKF 742

Query: 1282 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1319
            V +P   F  G+ V  +V  V+   +R+ V+L+ SD R
Sbjct: 743  VTNPSDHFVEGQTVVVKVTKVDEEKQRMLVSLRLSDCR 780



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 23/228 (10%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS-KGCFI 1262
            F +  +LR+++ G  S+ +  L   +  P K LEK E      +  G V  VT  KG  +
Sbjct: 1174 FQIGQALRATVVGPDSSRAF-LCLSLIGPHK-LEKGE------VAMGRVVKVTPHKGLTV 1225

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V + ++SD Y E+P ++F   K+V   VLS       + + L  ++  T S
Sbjct: 1226 AFPFGRTGTVSVFHMSDSYSETPLEDFMPQKVVRCYVLSTADHMLTLSLRLSRTNPETKS 1285

Query: 1323 Q---SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDHVDNI 1376
            +    EI+++ ++  G ++ G ++ +E  G+ + +   ++VGL    HVS+ S    D  
Sbjct: 1286 KVEDPEIDSMQDVKAGQLLRGYVQSIEPSGVLLGL-GPSVVGLAQFSHVSQSSPPKKDLY 1344

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA---DNLQMSSE 1421
                  G  +  K+L+++  K  + L    S+   D    D L +S E
Sbjct: 1345 RKYLPEGRLLTAKVLRLNHNKNLVEL----SFLPTDTGRPDVLSVSPE 1388


>gi|363754491|ref|XP_003647461.1| hypothetical protein Ecym_6262 [Eremothecium cymbalariae DBVPG#7215]
 gi|356891098|gb|AET40644.1| hypothetical protein Ecym_6262 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1714

 Score =  388 bits (997), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 356/1200 (29%), Positives = 575/1200 (47%), Gaps = 150/1200 (12%)

Query: 642  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701
            GC V  LG L  F P S+  +           +GQ+V   +L+ N +  RI +S K    
Sbjct: 612  GCIVSLLGNLKAFLPNSEISEAFVKKAQDHLRLGQTVMIKVLECNEDRQRIIVSCK---V 668

Query: 702  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 759
            SST AS  QE     EK+ + +S          ++  I+    +  V ESND G+  V+ 
Sbjct: 669  SSTAASQQQEAI---EKMIVGRS---------IIDVTIVEKTKDSIVAESNDAGLRGVIF 716

Query: 760  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
                SD    I  ++     ++ G+ ++  + D     R+ +++ K   I   R+A  + 
Sbjct: 717  VGHLSD--SRIEQNRALLKKLKIGTGLRGLVTDKDTKTRVFNMTCKKSLI---RDAEEDL 771

Query: 820  QAQKKKRKREASKDLGVHQTVNAIVE-----IVKENYLVLSLPEYNHSIGYASVSDYNTQ 874
                 ++ +   K+  +H  V +I E          ++ L LP Y        +S     
Sbjct: 772  LPLNFEKIKNKDKNSPMHGYVKSISEKGIFVAFHGKFVGLVLPSYATESRDVGIS----- 826

Query: 875  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK---------- 924
                K+F   QSV  TV  L       R LL +K   E + S++K   K           
Sbjct: 827  ----KKFYINQSV--TVYLLRIDEENERFLLTMK---EPKLSTNKEEPKVVGALNPVDQN 877

Query: 925  ----SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN---F 977
                S Y +G L +A I  IK  +L +      HGRI ++E+ D+   + EN+ +    F
Sbjct: 878  IKYLSEYTIGRLTKARINSIKKTQLNVVLADNLHGRIDVSEIFDNFEEI-ENISTPLVPF 936

Query: 978  KIGQTVTARII----AKSNK--PDMKKS---FLWELSIKPSMLTVSEIGSKLLFEECDVS 1028
            K G  +  R+I    AK++K  P   ++    + ELS K S+L+        +    DV 
Sbjct: 937  KKGDIIDVRVIGFHDAKTHKFLPVSHRNGINTVLELSAKKSVLS----NEHRILSFKDVK 992

Query: 1029 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ-EFQRRFHIGKAVTGHVL 1087
            +G  + G+V     ++  LTIS+ LKA++   + + E    + E    F +G A+   V 
Sbjct: 993  VGDSLVGFVNNFSKDFVWLTISQSLKAKIPNFELSDEGDIFKSEIDHTFPLGSALKVKVT 1052

Query: 1088 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1147
            S++ E + + +  R         ++ +  D     +  G  +  R+ K+ S    L++ +
Sbjct: 1053 SLDSEHRTVNVSARS-------TSITVIKD-----VEIGSTLPARVVKVSSSY--LLLDL 1098

Query: 1148 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1207
            G  + G V F       V+D L  Y         G   G  V   V++      G   + 
Sbjct: 1099 GNKVTG-VAF-------VTDALDEYSLSLETAFEG-KVGSIVSATVVDCDV---GNNRIN 1146

Query: 1208 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1267
            LSLR            D+++  D           L    +V+G++K VT KG F+ LSR 
Sbjct: 1147 LSLRGG-----KPKDRDITSHTD-----------LKRGDVVRGFIKTVTEKGIFVYLSRS 1190

Query: 1268 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1327
            + A V +S L+D Y++  +K +   + +  +V++    S  + +T+K S+        + 
Sbjct: 1191 IQAFVPVSKLTDAYIKEWKKFYRPMQPITAKVVNCADNS-HILLTMKESEV-NGDLHILK 1248

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
              +++ VGDI  G +K V  +G+F+ + NT N+ GL H SE+SE  V+++  ++  G+KV
Sbjct: 1249 GYNDIQVGDIFEGYVKNVTDFGVFVKLGNTLNVTGLAHKSEVSEAKVEDLHNLFGEGDKV 1308

Query: 1387 KVKILKVDKEKRRISLGMKSSYFKNDADNL----QM---SSEEESDEAIEEVGSYNRSSL 1439
            K  ILK +  K++ISLG+K+SYFKN+  ++    QM     E E+DE +E V   N S  
Sbjct: 1309 KAIILKTNPTKKQISLGLKASYFKNEVADVVEEEQMIPSDPESEADEVMEGVDYNNESEN 1368

Query: 1440 LENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEA 1499
                    + +   S DG SL  A  +  ASV      LD        G  +     +E 
Sbjct: 1369 ESEEQELSKKVISSSNDGLSLS-AAFDWTASV------LDQA------GEVEESSDEEED 1415

Query: 1500 KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYM 1559
             T  +      K K   ++  +I           AP +  ++ERL+  +PNSS +W+ YM
Sbjct: 1416 FTSKKSKRNKRKTKVSADKTIDINTR--------APESVADYERLIMGNPNSSVIWMNYM 1467

Query: 1560 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1619
            AF L +++V+KAR + ERAL+TIN REE EKLNIW+A  NLEN +G+  EE +  +F+RA
Sbjct: 1468 AFQLQLSEVDKARELGERALKTINFREEAEKLNIWIAILNLENTFGS--EETLEGMFRRA 1525

Query: 1620 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEG 1677
             QY +   +H+ L+ +Y  +E+   A+EL     KKF      +W+   + LL Q ++E 
Sbjct: 1526 CQYMESFTIHMKLISIYTMSEKFDKANELYSSTAKKFGSEKVSIWVSWSEFLLVQGRKEE 1585

Query: 1678 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1737
              A++ +AL  LP+  HI+ + + A LEF  G  ++GRS+FEG+L++ PKR DLW++Y+D
Sbjct: 1586 AHAILAKALNVLPKRNHIEIVRKVAQLEFSKGEPEQGRSLFEGLLADAPKRIDLWNVYID 1645

Query: 1738 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            QEI+L D   +  LFER I+  +  K+ KF F K+L++E+S  ++   EYVK KA EYV+
Sbjct: 1646 QEIKLLDKKKVENLFERVITKKISRKQAKFFFNKWLQFEESQDDQRTAEYVKAKAAEYVQ 1705



 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 286/1253 (22%), Positives = 526/1253 (41%), Gaps = 151/1253 (12%)

Query: 5    GVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---DNEIEA--------------- 43
            G V  +++ D+ +     LRG   L   +D    IL   D+ +E+               
Sbjct: 122  GQVCSISKMDICVAFTDNLRGYVPLTNISDRFSSILEELDDAMESGSDSEDEDGEYDSSD 181

Query: 44   ---NEDNL----LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKG 90
               NE+N     LP +   F VGQ + C V +   LD   K+  K +I LS+    + + 
Sbjct: 182  ERKNENNRPTAELPNLQNYFTVGQWLRCYVQKNTALDPQHKK--KHRIELSIEPPKVNQ- 238

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV 150
            L  E + +   +   VKSIEDHG IL  G+ + TGF+ + +   ++ + +   + L  +V
Sbjct: 239  LEDEDLSKNSTIQCSVKSIEDHGAILDLGIKNITGFISKKDFPGSNEL-LAGSVFLANIV 297

Query: 151  RSIDRTRKVVYLSSDPDTVSK-CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 209
            +   RT  V +     D  SK C    +   S+D ++PG  V    Q I  +G++     
Sbjct: 298  KRSGRTVTVNF-----DFASKKCKVSQIS--SVDAVIPGQTVDFLCQKITNHGIVGKAFG 350

Query: 210  YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS 269
               G + I  LQ  F T   KN Y     +  RI+    T        N  +L +  P  
Sbjct: 351  LVDGFLGISQLQ-CFSTDIIKNKYPVGNNIKCRIIATLTTKNG-----NKTILVSTLP-- 402

Query: 270  HV-KVGDIYDQSKVVRVDRGLGLLLD--IPSTPVSTPAYVTISD--VAEEEVRKLEKKYK 324
            HV  + D   + + ++    +G LLD  +  T      Y+ +SD  + +  + K+     
Sbjct: 403  HVLSLNDTLLEHEALQA-FSVGYLLDSCMVETRDQQYFYIKLSDDRLGQVHISKIGDVLP 461

Query: 325  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG-MVVKGKVIAVDSFGAIVQ 383
             G+ ++ RI+G+  ++            E       D+  G ++ K ++ +V   G  + 
Sbjct: 462  AGN-MKARIIGYNTIDAYYQLTTDPKMLEVDYLRSLDIPIGKILTKCEITSVSDKGIELN 520

Query: 384  FPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---S 438
              GG  KA  P  H+S+  +V P +KFK+G+++  RVL V  K RI  T KK+LV    S
Sbjct: 521  LYGGQFKAFVPPLHISDVRLVYPERKFKIGSQVKARVLNVDHKGRIYATLKKSLVSYDDS 580

Query: 439  KLAILSSYA-----EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 493
             + ++SS+      EA DR  T G +   +  GC V     ++ F P SE+      +  
Sbjct: 581  SIQLISSFENVKNLEADDRK-TLGTVESFKPGGCIVSLLGNLKAFLPNSEISEAFVKKAQ 639

Query: 494  SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG--VVDVV----T 547
                +GQ V  +++      +RI +S  +  T  S+     +  ++ G  ++DV     T
Sbjct: 640  DHLRLGQTVMIKVLECNEDRQRIIVSCKVSSTAASQQQEA-IEKMIVGRSIIDVTIVEKT 698

Query: 548  PNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLL 605
             +++V      G  +G I   HL+D  +E    +   +K G     L+   D ++    +
Sbjct: 699  KDSIVAESNDAGL-RGVIFVGHLSDSRIEQNRALLKKLKIGTGLRGLVTDKDTKTRVFNM 757

Query: 606  SAKYSLINSAQQ--LPSDASHIH---PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 660
            + K SLI  A++  LP +   I     NS +HGYV +I E G FV F G+  G    S A
Sbjct: 758  TCKKSLIRDAEEDLLPLNFEKIKNKDKNSPMHGYVKSISEKGIFVAFHGKFVGLVLPSYA 817

Query: 661  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 720
             + +   +SK +Y+ QSV   +L ++ E  R  L++K+   S+            +E+  
Sbjct: 818  TESRDVGISKKFYINQSVTVYLLRIDEENERFLLTMKEPKLSTN-----------KEEPK 866

Query: 721  MLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFI 770
            ++ +       +K++  + IG + + +++  +     VV++   H         D +  I
Sbjct: 867  VVGALNPVDQNIKYLSEYTIGRLTKARINSIKKTQLNVVLADNLHGRIDVSEIFDNFEEI 926

Query: 771  THHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 828
             +        + G +I   ++    AK  + + +S +   I+   E ++ +     + + 
Sbjct: 927  ENISTPLVPFKKGDIIDVRVIGFHDAKTHKFLPVSHRN-GINTVLELSAKKSVLSNEHRI 985

Query: 829  EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVI 888
             + KD+ V  ++   V    ++++ L            ++S     K P  +  +   + 
Sbjct: 986  LSFKDVKVGDSLVGFVNNFSKDFVWL------------TISQSLKAKIPNFELSDEGDIF 1033

Query: 889  ATVM--ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV--GSLVQAEITEIKPLE 944
             + +    P  S     +  L +   T   S++        DV  GS + A + ++    
Sbjct: 1034 KSEIDHTFPLGSALKVKVTSLDSEHRTVNVSARSTSITVIKDVEIGSTLPARVVKVSSSY 1093

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1004
            L L  G    G   +T+  D+ S  +E  F   K+G  V+A ++      D+  + +  L
Sbjct: 1094 LLLDLGNKVTGVAFVTDALDEYSLSLETAFEG-KVGSIVSATVV----DCDVGNNRI-NL 1147

Query: 1005 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1064
            S++       +I S       D+  G  V G++  V  +   + +SR ++A  F+  S  
Sbjct: 1148 SLRGGKPKDRDITS-----HTDLKRGDVVRGFIKTVTEKGIFVYLSRSIQA--FVPVSKL 1200

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
              + ++E+++ +   + +T  V++      +L L ++  +       +   ND     I 
Sbjct: 1201 TDAYIKEWKKFYRPMQPITAKVVNCADNSHIL-LTMKESEVNGDLHILKGYND-----IQ 1254

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHL--YGRVHFTELKNICVSDPLSGYDEG 1175
             GDI  G +  +     G+ V++G  L   G  H +E+    V D  + + EG
Sbjct: 1255 VGDIFEGYVKNVTD--FGVFVKLGNTLNVTGLAHKSEVSEAKVEDLHNLFGEG 1305


>gi|366991363|ref|XP_003675447.1| hypothetical protein NCAS_0C00900 [Naumovozyma castellii CBS 4309]
 gi|342301312|emb|CCC69080.1| hypothetical protein NCAS_0C00900 [Naumovozyma castellii CBS 4309]
          Length = 1722

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 346/1201 (28%), Positives = 576/1201 (47%), Gaps = 152/1201 (12%)

Query: 641  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
            +GC V F G +T F P ++  +       +   +GQ++   +L ++ E  R+ ++    C
Sbjct: 619  SGCIVAFFGGMTAFLPNAEISEVFVRKPEEHLRLGQTIVVKLLKIDQENARMLVT----C 674

Query: 701  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
              S D                 Q+ K   +  K + G    S+++  V E     V+V  
Sbjct: 675  KISND-----------------QAEKKKETIEKLIPG---RSMVKVNVVEKTKDSVIVEL 714

Query: 761  EEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFID 810
             E S + G I    L+ A +E           GS ++  ++D     ++ +LSLK   I 
Sbjct: 715  PETS-LRGVIYVGHLSDARIEQNRAAIKKIAIGSELKGLVIDKDARTQVFNLSLKQSLIK 773

Query: 811  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN--YLVLSLPEYNHSIGYASV 868
              +   S       K K + +   G  ++++     V  N  ++ L LP Y        +
Sbjct: 774  DAKNEVSPLTYADIKSKSKTTPLHGYIKSISNKGLFVAFNGKFVGLVLPSYAVESRDVDI 833

Query: 869  SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS----------- 917
            S         K F   QSV A +  L S     R LL L+  S  + SS           
Sbjct: 834  S---------KTFYINQSVTAYL--LRSDDDNERFLLTLRTPSTKDDSSKVTGTETLKPI 882

Query: 918  SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFS 975
                K    +  G +V+ +I  IK  +L +      HGRI I EV D  S++    +   
Sbjct: 883  DPAMKDLKDFTTGKVVKVQIKGIKKNQLNVVLADNLHGRIDIAEVFDSFSDIKNATHPLI 942

Query: 976  NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1026
            +FK G  + A+II   +    +         K  + ELS+KPS +   +I +       D
Sbjct: 943  DFKKGNIIDAKIIGTHDIKSHRFLPISHHAVKGSVLELSLKPSQMRSKDIKT---LSISD 999

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGH 1085
            V++G  +TG+V    +    LT+S  LKA++ + D A +  +  E  +  F +G A+   
Sbjct: 1000 VAVGDELTGFVNNYGSNTLWLTVSPTLKAKISLFDLAEDGLKSSEKVEDNFPLGCALPVK 1059

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            V SI+ E  ++ +  R           +IS ++++     GD V  RI KI      +++
Sbjct: 1060 VTSIDTEHGVVNVTGRSH--------TEISFESLKV----GDNVPSRIIKIADSY--VLL 1105

Query: 1146 QIGPHLYGRVHFTE-LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
             +G  ++G    T+ L +  V  PL    +G         E   V  K++ I    +   
Sbjct: 1106 DLGNKIHGIAFITDALDDFSV--PLKEAYKGM--------ENDIVSAKIVSIDAENK--- 1152

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
             V LSLR+      S +S                  D+S   +V G VK+++ KG F+ L
Sbjct: 1153 KVNLSLRTESAKTPSISSH----------------TDISQGDVVHGLVKSISDKGIFVYL 1196

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
            SR ++A V +S LSD Y++  +K F   + V G+V++ E  S R+ +TL+ S+       
Sbjct: 1197 SRSINAFVPVSKLSDTYLKDWKKFFKPMQYVIGKVVNAEEDS-RILLTLRESEV-NGDLK 1254

Query: 1325 EINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAG 1383
             + N  ++ V +I  G +K V  +G+F+ ++NT N+ GL H SE+++   +++ +++  G
Sbjct: 1255 ILKNYDDIKVNEIYNGSVKNVTDFGVFVKLDNTVNVTGLAHNSEIADQKPEDLASLFGVG 1314

Query: 1384 EKVKVKILKVDKEKRRISLGMKSSYFKNDADNL---QMSSEEESDEAIEEVGSYNRSSLL 1440
            ++VK  +LKV+ EK+++SL +K+S F N  ++    + + + + DE +E V   N  S  
Sbjct: 1315 DRVKAYVLKVNPEKKQLSLSLKASRFGNTNESKVEEKETVDADGDEIMEAVDYNNAPSDN 1374

Query: 1441 ENSSVAVQDMDME---SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTD 1497
            EN +  + +   +   S DG SL     +  AS+      LD  Q +  +   ++   T 
Sbjct: 1375 ENETEEILETVSKPKISTDGLSLSTG-FDWTASI------LDQAQAEESSEEDEDFTET- 1426

Query: 1498 EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIK 1557
                   K NRH K+K+    ++ I       +   AP +  +FERL+  +PNSS +W+ 
Sbjct: 1427 -------KRNRHKKRKQTIVEDKTID------INTRAPESVADFERLIIGNPNSSVIWMN 1473

Query: 1558 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1617
            YMAF L ++++EKAR +AERAL+TIN REE+EK NIW+A  NLEN +G+  +E +  VF+
Sbjct: 1474 YMAFQLQLSEIEKARELAERALKTINFREESEKQNIWMAMLNLENTFGS--DETLEDVFK 1531

Query: 1618 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQ 1675
            RA QY D   +H  LL +Y+ + +   A EL     KKF   +  +W+     L    + 
Sbjct: 1532 RACQYMDSFTMHNRLLSIYQMSGKIDKAAELFKITAKKFGSENVSIWVSWGDFLTSHGKA 1591

Query: 1676 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1735
            +  + ++  AL +LP+  HI+ + + A LEF  G  + GRS+FEG++++ PKR D+W++Y
Sbjct: 1592 QEARGILSNALKALPKRDHIEVVRKFAQLEFAKGDPEGGRSLFEGLIADAPKRIDIWNVY 1651

Query: 1736 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
            LDQEI+  +   +  LFER +S  +  K+ KF F K+LE+E+S  + + +EYVK KA EY
Sbjct: 1652 LDQEIKANEKKKVEDLFERVVSRKITRKQAKFFFNKWLEFEESQNDNKVMEYVKAKATEY 1711

Query: 1796 V 1796
            V
Sbjct: 1712 V 1712



 Score =  167 bits (423), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 283/1194 (23%), Positives = 505/1194 (42%), Gaps = 169/1194 (14%)

Query: 5    GVVAEVNEKDLVICLPGGLRGLARAADALDPIL---------------------DNEIEA 43
            G ++E+++ D+ I    GL G         P +                     D E ++
Sbjct: 124  GQISEISKTDMCISFTDGLSGYVNLTHISAPFMTILEELDDDMDDDDELEKKKTDEEYDS 183

Query: 44   NEDNL-----------LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSL 86
            ++D             LP++   F VGQ + C V+    L    K+  K+KI LS+  S+
Sbjct: 184  SDDEEEKEKATKDSIGLPSLENYFKVGQWLRCSVISNTALLPKDKKNKKKKIELSIEPSV 243

Query: 87   LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLL 146
            +   L+ E +     +   VKSIEDHG +L  G+  FTGF+ + +  E   +   PG + 
Sbjct: 244  V-NTLTEEDIVRSASVQCAVKSIEDHGAMLDIGIDGFTGFISKKDYPEFEKL--LPGAVF 300

Query: 147  QG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 205
             G V +  DRT  +    SD       ++      S+D +VPG +V    Q+I  NG++ 
Sbjct: 301  LGNVTKKSDRTVTINLDFSDKKAKITHIS------SVDAVVPGQVVDLLCQTITNNGIVG 354

Query: 206  SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 265
                     +   HL+  F     K+++     +  RI+ V      +    +  LL + 
Sbjct: 355  KTFGLVPSFISTAHLR-VFKEEELKHNFAVGSNIPCRIIAV-----LINKENDKTLLLST 408

Query: 266  APPSHVK-----VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS-------DVAE 313
             P  H+K     +G++ + +        +G L+D  +       Y+ ++       +V  
Sbjct: 409  LP--HIKSLKNVLGEVENLTAF-----PIGHLIDSCTVKGRDSDYLYLAMDDDRVGEVHS 461

Query: 314  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KV 372
              + +LEK  K    ++ R+LGF  ++ L          +       D+  G V+   ++
Sbjct: 462  SRIGELEKFDK----LKARVLGFNSIDNLYELSTDPEILKLKYLRSKDIPIGEVLPNCEI 517

Query: 373  IAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVT 430
             AV S G  ++ F G  KA+ P  H+S+  +V P +KFK+G+++  RVL + ++  I VT
Sbjct: 518  TAVSSKGIELKIFNGQFKAIVPPMHISDTRLVYPERKFKIGSKVKGRVLNINNRGLIYVT 577

Query: 431  HKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 483
             KKTLV      + +LS++A A +       T   +T     GC V F+ G+  F P +E
Sbjct: 578  LKKTLVNIEDDDIQLLSNFAIAKEIQEKNQKTVATVTAFRPSGCIVAFFGGMTAFLPNAE 637

Query: 484  LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLV 539
            +      +P     +GQ +  +++     + R     M+   ++S D   K    +  L+
Sbjct: 638  ISEVFVRKPEEHLRLGQTIVVKLLKIDQENAR-----MLVTCKISNDQAEKKKETIEKLI 692

Query: 540  SG----VVDVV--TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQ 592
             G     V+VV  T ++V+V  + +   +G I   HL+D  +E        I  G E   
Sbjct: 693  PGRSMVKVNVVEKTKDSVIVE-LPETSLRGVIYVGHLSDARIEQNRAAIKKIAIGSELKG 751

Query: 593  LLVLDNESSNLL-LSAKYSLINSAQQLPS-----DASHIHPNSVVHGYVCNIIETGCFVR 646
            L++  +  + +  LS K SLI  A+   S     D       + +HGY+ +I   G FV 
Sbjct: 752  LVIDKDARTQVFNLSLKQSLIKDAKNEVSPLTYADIKSKSKTTPLHGYIKSISNKGLFVA 811

Query: 647  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            F G+  G    S AV+ +  D+SKT+Y+ QSV + +L  + +  R  L+L+ +  +  D+
Sbjct: 812  FNGKFVGLVLPSYAVESRDVDISKTFYINQSVTAYLLRSDDDNERFLLTLR-TPSTKDDS 870

Query: 707  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS 764
            S          K+   ++ K     +K ++ F  G V++ ++   + N   VV++   H 
Sbjct: 871  S----------KVTGTETLKPIDPAMKDLKDFTTGKVVKVQIKGIKKNQLNVVLADNLHG 920

Query: 765  DV---YGFITHHQLAGAT-----VESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFRE 814
             +     F +   +  AT      + G++I A I+     K+ R + +S   V       
Sbjct: 921  RIDIAEVFDSFSDIKNATHPLIDFKKGNIIDAKIIGTHDIKSHRFLPISHHAVKGSVLEL 980

Query: 815  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSD--Y 871
            +    Q + K  K  +  D+ V   +   V     N L L++ P     I    +++   
Sbjct: 981  SLKPSQMRSKDIKTLSISDVAVGDELTGFVNNYGSNTLWLTVSPTLKAKISLFDLAEDGL 1040

Query: 872  NTQKFPQKQFLNGQSVIATVMALPSS----STAGRLLLLLKAISETETSSSKRAKKKSSY 927
             + +  +  F  G ++   V ++ +     +  GR        S TE S         S 
Sbjct: 1041 KSSEKVEDNFPLGCALPVKVTSIDTEHGVVNVTGR--------SHTEISF-------ESL 1085

Query: 928  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
             VG  V + I +I    + L  G   HG   IT+  DD S  ++  +   +    V+A+I
Sbjct: 1086 KVGDNVPSRIIKIADSYVLLDLGNKIHGIAFITDALDDFSVPLKEAYKGME-NDIVSAKI 1144

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1047
            +  S   + KK     LS++        I S       D+S G  V G V  + ++   +
Sbjct: 1145 V--SIDAENKKV---NLSLRTESAKTPSISS-----HTDISQGDVVHGLVKSISDKGIFV 1194

Query: 1048 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1101
             +SR + A  F+  S    + L+++++ F   + V G V++  ++ ++L L LR
Sbjct: 1195 YLSRSINA--FVPVSKLSDTYLKDWKKFFKPMQYVIGKVVNAEEDSRIL-LTLR 1245


>gi|354546265|emb|CCE42995.1| hypothetical protein CPAR2_206380 [Candida parapsilosis]
          Length = 1728

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 346/1270 (27%), Positives = 597/1270 (47%), Gaps = 182/1270 (14%)

Query: 604  LLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 662
            L++ + SL+N    ++ S        S  +  V   +  G  V F G L  F P+++  +
Sbjct: 560  LVTLRKSLVNLEDDEILSSFDDAKVGSKTNAIVEKFVHGGVLVSFFGSLRAFLPKTEISE 619

Query: 663  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 722
                D SK   +GQ V   ILD+N E  R+ ++LKQS                       
Sbjct: 620  TFVDDASKYLKLGQVVNVKILDINEEQKRLVVTLKQS----------------------- 656

Query: 723  QSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 781
              S+ + S+   +   I G SV+   V E  +  V++  E  S++ G +   QL+    E
Sbjct: 657  --SQLSASQKTEIANLIPGISVVHAVVVEKKNDSVLIELE-GSNLRGVVHDGQLSDGNYE 713

Query: 782  SGSVIQAAILDVAKAERLV---DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 838
                +   +   +K E L+   DL  +TV         S  +A KKK+      D+  ++
Sbjct: 714  QNRALFKKLEISSKVEVLILEKDLKARTVIA---TAKKSLIEASKKKQLPTDFDDVQPNR 770

Query: 839  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 898
             +   V+ V    L ++       +  A     +  +   K+F   QS+   V+++ S +
Sbjct: 771  IIKGYVKSVTNLGLFVAFTGRLTGLILAKYVSKSAHEDLSKRFYKYQSLTCKVLSVDSEN 830

Query: 899  TAGRLLLLLKAISETETSS-----SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 953
               R LL +    +++  +         K    Y  G   +A I  +K  +L ++     
Sbjct: 831  K--RFLLTIANGKDSDGDNLINPVDPTKKTIEDYASGIYTKAIIKSVKGTQLNVRLADNL 888

Query: 954  HGRIHITEV---NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD----------MKKSF 1000
            +GR+ +T+      D  N+++ L S F  G+ +  ++I   +  +            K  
Sbjct: 889  NGRVDVTQCFKSTKDIKNLLQPLSSGFHKGEELNVKVIGIHDAKNHTFLPITHNKTNKQT 948

Query: 1001 LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1060
            + ELS++   +    +    L    DV  G +   +V  +D  +  ++IS  +K ++  +
Sbjct: 949  IMELSLQDPQVRKKNLSDLKL---PDVQKGDKFVAFVNNIDRGFVWVSISPSIKGRISFM 1005

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDIS 1115
            D + + S   +F+ ++ IG A+   V  ++ E + L L  R      F+D + DKT    
Sbjct: 1006 DLSDDGSIFYDFENKYPIGAALQVKVKEVDNEHQTLSLTSREQYISKFEDVVKDKT---- 1061

Query: 1116 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1175
                    +   I+  + S +L  +G  V+                +  ++D L+ Y + 
Sbjct: 1062 --------YPARIIKVKDSYVLVDLGDKVIA---------------SSFITDALNDYSD- 1097

Query: 1176 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1235
            + D    +   ++V   VL+I         + +SLR                D D+  K 
Sbjct: 1098 KLD--HAFHVNEYVGATVLDIDV---DQHKISVSLR----------------DKDSMDKT 1136

Query: 1236 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1295
            +  I+DLS   +V+G+VKNV+S G ++ L R + A V +S+LSD Y++  +K F   + V
Sbjct: 1137 INSIKDLSRGDVVKGFVKNVSSNGVYVSLGRSVYALVRVSDLSDSYLKDWKKFFKPNQSV 1196

Query: 1296 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
             G++++ +    R+ +TLK S+     ++ + +  +L VGD+  G + +   +G+F+ ++
Sbjct: 1197 TGKIINCKE-EGRILMTLKESEVNGELKT-MKSFDDLAVGDVFEGHVTKTTDFGVFVKLD 1254

Query: 1356 NT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
             T N+ GLCH +E+SE+ V N+  ++  G++VKVKILK+D  K+++SLGMK+SYFK+  +
Sbjct: 1255 GTVNVSGLCHHTEISENDVKNVMALFGEGDRVKVKILKIDPSKKQLSLGMKASYFKDFVE 1314

Query: 1415 NLQMSSEEESDEAIEEVGSYNRSSLLE---------NSSVAVQDMDMESEDGGSLV---- 1461
            +     E E D  +++          E         N  V V   D E ED    V    
Sbjct: 1315 D-----ESEVDVEMKDAEEEEEEEEEEEEYESEGSENDDVVV---DAEKEDKEEDVSDDD 1366

Query: 1462 ------LAQIESRASVPP--LEVNLDD------EQPDMDNGISQNQGHTDEAKTIDEKNN 1507
                    + E++A+  P  L  N  D      +Q + +N  S ++   + +K++  K +
Sbjct: 1367 NESGEEDDEEEAQATSEPRSLSTNGFDWTASILDQTEDNNTSSDDEDFVNNSKSLKPKKS 1426

Query: 1508 RHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD 1567
            R   K E +  +   RA          P++  +FERL+  +PNSS +W+ YM+F L +++
Sbjct: 1427 RKQTKVEDKTIDLNTRA----------PQSVADFERLLIGNPNSSILWMNYMSFNLQLSE 1476

Query: 1568 VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1627
            V+KAR I ERAL+TIN REE EKLNIW+A  NLEN +G   +E++  VF++A QY D   
Sbjct: 1477 VDKARQIGERALETINYREEQEKLNIWIALLNLENTFGT--DESLDAVFKKACQYMDSFT 1534

Query: 1628 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRAL 1686
            +H  L  +   +E+   A++L   M KKF  +   W+     LL Q      + V+ +AL
Sbjct: 1535 IHQKLASILIMSEKFDQANDLFKVMSKKFGQNVLTWVLYGSFLLDQDANNEARQVLAKAL 1594

Query: 1687 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL---- 1742
              LP+  HI+ + + A LE+  G  ++ RS+FEG++++ PKR DLW++Y+DQEI+     
Sbjct: 1595 QVLPKRDHIEVVRKFAQLEYAKGDIEQARSLFEGLIADAPKRIDLWNVYIDQEIKCGGGG 1654

Query: 1743 GDVD---------------LIRGLFERAI-SLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1786
            GDVD                +  LFER I +  +  K+ KF F K+LEYE+S G+++ + 
Sbjct: 1655 GDVDEDKEKNKSKTASNKQQVESLFERVIENKKVSRKQAKFFFNKWLEYEESQGDDKMVG 1714

Query: 1787 YVKQKAMEYV 1796
             VK KA+EYV
Sbjct: 1715 KVKAKAIEYV 1724



 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 177/681 (25%), Positives = 318/681 (46%), Gaps = 38/681 (5%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
           L +IF VG  +   V++ +       K++I +S+   L    L  E +  G +++  VKS
Sbjct: 180 LKSIFRVGSWLKAKVVETESS----NKKRIEVSIEPELANANLEKEDLVPGNIVSCSVKS 235

Query: 109 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDV---KPGLLLQGVVRSIDRTRKVVYLSSD 165
           IEDHG IL  G+  F+ F+    L +N+ ID+   K GL+L   + S    R +    + 
Sbjct: 236 IEDHGLILDCGIEGFSAFVSNKEL-KNAEIDLETCKEGLVLTTTIVSKPSGRVITVKPAI 294

Query: 166 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 225
             T +K +T      S+D +  G +V   V  + + G+M        GT++   LQ  F 
Sbjct: 295 ASTTAKKLTPITTISSVDAIQVGSVVEALVSDVTDAGIMTRVYGLVDGTLNFSDLQ-IFS 353

Query: 226 TTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLLHNRAPPSHVK------VGDIY 277
           T   K+ +     +  R++ +      R + L+L  + L      S  +      VG ++
Sbjct: 354 TQELKHKFAIGSNIKTRVVAILQKGGVRKLVLSLVSHSLQMGNESSKTEALEAFPVGHVF 413

Query: 278 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 337
           D ++V+  D+   + + + S   ST   +  S++ E    K    Y   S  + R++GF 
Sbjct: 414 DDAEVLGSDQEY-VYVKLGS---STLGQIHNSNIDES---KTLIDYSVTSKHKARVIGFN 466

Query: 338 HLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAV--DSFGAIVQFPGGVKALCPL 394
            ++ L     K +  + L  T  D+    ++   ++I V  DS G  V+F    +   P 
Sbjct: 467 MIDNLYVLTFKPTVIDALYLTVKDIPVVTLLPSCEIIKVLPDSGGIQVKFLEEFQGFVPP 526

Query: 395 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRL 453
            HMS+ ++V P +KF+VG+++  R+L  K K   VT +K+LV      ILSS+ +A    
Sbjct: 527 NHMSDIKLVYPERKFRVGSKVKGRLLAHKGKTPLVTLRKSLVNLEDDEILSSFDDAKVGS 586

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
            T+  + K    G  V F+  ++ F P++E+      + S    +GQVV  +I+      
Sbjct: 587 KTNAIVEKFVHGGVLVSFFGSLRAFLPKTEISETFVDDASKYLKLGQVVNVKILDINEEQ 646

Query: 514 RRINLSFMMKPTRVSEDDLVKLGSLVSGV-----VDVVTPNAVVVYVIAKGYSKGTIPTE 568
           +R+ ++ + + +++S     ++ +L+ G+     V V   N  V+  +     +G +   
Sbjct: 647 KRLVVT-LKQSSQLSASQKTEIANLIPGISVVHAVVVEKKNDSVLIELEGSNLRGVVHDG 705

Query: 569 HLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQ--QLPSDASH 624
            L+D + E    +   ++   + + L++  D ++  ++ +AK SLI +++  QLP+D   
Sbjct: 706 QLSDGNYEQNRALFKKLEISSKVEVLILEKDLKARTVIATAKKSLIEASKKKQLPTDFDD 765

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           + PN ++ GYV ++   G FV F GRLTG             DLSK +Y  QS+   +L 
Sbjct: 766 VQPNRIIKGYVKSVTNLGLFVAFTGRLTGLILAKYVSKSAHEDLSKRFYKYQSLTCKVLS 825

Query: 685 VNSETGRITLSLKQSCCSSTD 705
           V+SE  R  L++     S  D
Sbjct: 826 VDSENKRFLLTIANGKDSDGD 846



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 177/442 (40%), Gaps = 72/442 (16%)

Query: 409  FKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
            F  G EL  +V+G+   +    + +TH KT  ++ + +     +   + ++   +  ++K
Sbjct: 915  FHKGEELNVKVIGIHDAKNHTFLPITHNKTNKQTIMELSLQDPQVRKKNLSDLKLPDVQK 974

Query: 465  HGCFVRFYNGV-QGF-----APR-----SELGL-DPGC---EPSSMYHVGQVVKCRIMSS 509
               FV F N + +GF     +P      S + L D G    +  + Y +G  ++ ++   
Sbjct: 975  GDKFVAFVNNIDRGFVWVSISPSIKGRISFMDLSDDGSIFYDFENKYPIGAALQVKVKEV 1034

Query: 510  IPASRRINLSFMMKPTRVSE-DDLVKLGSLVSGVVDVVTPNAVVVY---VIAKGYSKGTI 565
               +    LS   +   +S+ +D+VK  +  + ++ V     +V     VIA  +   T 
Sbjct: 1035 --DNEHQTLSLTSREQYISKFEDVVKDKTYPARIIKVKDSYVLVDLGDKVIASSFI--TD 1090

Query: 566  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
                 +D L+HA  +        E+    VLD +     +S      +S  +  +    +
Sbjct: 1091 ALNDYSDKLDHAFHVN-------EYVGATVLDIDVDQHKISVSLRDKDSMDKTINSIKDL 1143

Query: 626  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
                VV G+V N+   G +V     +      S   D    D  K +   QSV   I++ 
Sbjct: 1144 SRGDVVKGFVKNVSSNGVYVSLGRSVYALVRVSDLSDSYLKDWKKFFKPNQSVTGKIINC 1203

Query: 686  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF---IIGS 742
              E GRI ++LK+S                            NG ELK ++ F    +G 
Sbjct: 1204 KEE-GRILMTLKESEV--------------------------NG-ELKTMKSFDDLAVGD 1235

Query: 743  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 795
            V EG V ++ DFGV V  +   +V G   H +++   V++       G  ++  IL +  
Sbjct: 1236 VFEGHVTKTTDFGVFVKLDGTVNVSGLCHHTEISENDVKNVMALFGEGDRVKVKILKIDP 1295

Query: 796  AERLVDLSLKTVFIDRFREANS 817
            +++ + L +K  +   F E  S
Sbjct: 1296 SKKQLSLGMKASYFKDFVEDES 1317



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 166/384 (43%), Gaps = 45/384 (11%)

Query: 932  LVQAEITEIKPLE--LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
            L   EI ++ P    +++KF   F G +    ++D K    E     F++G  V  R++A
Sbjct: 497  LPSCEIIKVLPDSGGIQVKFLEEFQGFVPPNHMSDIKLVYPER---KFRVGSKVKGRLLA 553

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1049
               K  +       ++++ S++ + +   ++L    D  +G +    V K  +   L++ 
Sbjct: 554  HKGKTPL-------VTLRKSLVNLED--DEILSSFDDAKVGSKTNAIVEKFVHGGVLVSF 604

Query: 1050 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1109
               L+A  F+  +    + + +  +   +G+ V   +L IN+E+K L + L+      + 
Sbjct: 605  FGSLRA--FLPKTEISETFVDDASKYLKLGQVVNVKILDINEEQKRLVVTLKQSSQLSAS 662

Query: 1110 KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1169
            +  +I+N      +    +V  +   +L      +   G +L G VH  +L     SD  
Sbjct: 663  QKTEIANLIPGISVVHAVVVEKKNDSVL------IELEGSNLRGVVHDGQL-----SDGN 711

Query: 1170 SGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1229
               +   F  L         K +VL + + ++    +  + +S ++   ++    L TD 
Sbjct: 712  YEQNRALFKKLEISS-----KVEVLILEKDLKARTVIATAKKSLIE---ASKKKQLPTDF 763

Query: 1230 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1289
            D          D+ PN I++GYVK+VT+ G F+  + +L   +L   +S    E   K F
Sbjct: 764  D----------DVQPNRIIKGYVKSVTNLGLFVAFTGRLTGLILAKYVSKSAHEDLSKRF 813

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTL 1313
               + +  +VLSV+  +KR  +T+
Sbjct: 814  YKYQSLTCKVLSVDSENKRFLLTI 837


>gi|327267495|ref|XP_003218536.1| PREDICTED: protein RRP5 homolog [Anolis carolinensis]
          Length = 1816

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 366/1403 (26%), Positives = 644/1403 (45%), Gaps = 169/1403 (12%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANED----NLLPTIF 53
            M L G V E ++ +LVI LP GL G  +     DA + IL+ ++  +E     + L  +F
Sbjct: 85   MLLLGCVKEAHQLELVISLPNGLTGFVQVTQICDAYNKILNTQVATDEHLEDLSSLSDLF 144

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G +V C V+ L+  K + G+R I LS+    + K L+  T++ GM+L+  + S+EDHG
Sbjct: 145  FPGMVVRCAVVNLE--KTKAGRRSIQLSVNPKDVNKALNSSTLRPGMLLSGCIASVEDHG 202

Query: 114  YILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+P+   FLPR        + N G ++K G  L  ++  +    +++ +S     
Sbjct: 203  YLIDIGVPAAKAFLPRQKAQGYLQSNNKGAELKIGQYLNCLIEDVKNNGRIIRISISQAE 262

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            ++  +  + +  S+  L+PG++V  +V+ +  +G+ L FL+ FTG VD  H  +    T 
Sbjct: 263  IAAAIATEEQNWSLSNLLPGLVVKAQVREVTPSGMSLGFLSSFTGIVDFMHKNHLKGRT- 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
                Y+  + V A IL  +PT++A+ L+L P  L      S +   ++G I + SKV   
Sbjct: 322  ----YSPGEMVKACILSNNPTTKAIRLSLRPAFLQPGTQLSQLCSDRIGMIVENSKVKTF 377

Query: 286  --DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 343
                G   +LD  S   +   +++ S ++ +      +K+K G+  + RI+ +  ++ +A
Sbjct: 378  LSKTGAIFVLDDGSLGFAHQKHLSDSRLSFKP-----EKFKPGNEHKCRIIEYSLMDDMA 432

Query: 344  TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 403
               LK +  +     + D+ PG V++G ++ +  FG  V+    +K L P  H+++  + 
Sbjct: 433  LLSLKQNIMDAPFLKYQDIHPGQVLEGTILTLKPFGMHVKLTEYIKGLVPCLHLADVPLK 492

Query: 404  KPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 461
            +P KK+  GA +  RVL    ++++I +T KKTLV SKL IL+SY +A   LITHG++  
Sbjct: 493  QPEKKYSEGASVKCRVLVSIPEARKIVLTLKKTLVNSKLPILASYEDAKPGLITHGFVVC 552

Query: 462  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
              + GC V+FYN ++G  P++ELGL P   P  +++ GQVVK  ++   P   ++ LSF 
Sbjct: 553  AREFGCIVKFYNDIKGLVPKNELGLPPLTPPQEVFYEGQVVKVMVLKCEPEQGKVLLSFN 612

Query: 522  M----------------KPTRVSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 561
            +                K  ++ E+    D+  L     G+   + PN +  Y       
Sbjct: 613  LTDNPLDKTGRGEKTSKKQEKIYENAQVADVKILKKKDDGLDITILPNNISAY------- 665

Query: 562  KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPS- 620
               +P  HL+D++ H+ +    +K       ++ L ++  +L LS K +L+ +AQ+  + 
Sbjct: 666  ---LPMMHLSDYVSHSKLWSHWLKEDDLLHSVVCLHSKGRHLTLSRKPTLVLAAQEEHAV 722

Query: 621  -DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
             + S + P  ++ G+V NI+  G FV F   LTG AP+S   D    D    + +GQ+V 
Sbjct: 723  KNFSDLEPGLLLTGFVKNIMPYGVFVEFPYGLTGMAPKSAMSDKFVTDTKDHFVIGQTVI 782

Query: 680  SNILDVNSETGRITLSLKQSCCSSTDA-----SFMQEHFLLEEKIAMLQSSKHNGSELKW 734
            + + +++ E  RI LSLK S CSS D+     S + ++F   ++I  +   + + S  + 
Sbjct: 783  AKVTNIDEEKQRILLSLKLSDCSSEDSVSQSFSLLLQYFKELQEIKSIMKKRDDSSVAQR 842

Query: 735  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-THHQLAGATVESGSVIQAAILDV 793
            +        +E  VH+    G  V     +D    +  H  L G  V  G   +A +L  
Sbjct: 843  LCEIKPAQKLELVVHKVETDGSAVFRGTCADGLTVVAAHSHLGGKNVAVGEKAEAVVL-- 900

Query: 794  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLV 853
                  +D     +++    E  S++            K L +     AIV+ V   Y V
Sbjct: 901  -----YIDYLKAKIYVSLREELLSSK-----------PKKLTLDSQYEAIVQHVATEYSV 944

Query: 854  LSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMA--------LPSSSTAGRLL 904
             SL      I     S +N T +F  ++   GQSV+  +          L +    G+ +
Sbjct: 945  ASLIGTGQLIAIPVTSHFNDTFRFDSEKLKMGQSVMVVLKMVERGDYGLLLAVQAPGKRM 1004

Query: 905  LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
              +++  ++E         K S  VG +V+  +  +KP  + +       G IH +++ D
Sbjct: 1005 TAIRSRRDSEALEETLPTVKHSLCVGDVVKGTVKSVKPTHVLVAIDDHLMGSIHASQIVD 1064

Query: 965  DKSNVVENLF--SNFKIGQTVTARIIA----KSNK--PDMKKSF--LW-ELSIKPSMLTV 1013
            D   V E  F  S  K+GQ VTAR+I     ++++  P     F   W ELS++PS L  
Sbjct: 1065 D---VFEGTFPTSLLKVGQKVTARVIGGREIRTHRYLPITHPHFTQTWPELSVRPSELKG 1121

Query: 1014 SEIGSKLLFEECDVS--------IGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSA 1063
                  +L  E D S         GQ VT +V  Y  + +W  + ++  ++ ++  L  +
Sbjct: 1122 E--NKTVLGPEDDKSEETLKLFKPGQTVTCFVKKYNTEKKWLEVEVTPDIRGRIHELLLS 1179

Query: 1064 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1123
             +P  L++    F  G+A+   V   +     + L L     G+               +
Sbjct: 1180 LKPKILKKPGNFFKTGQALIATVTGCDTTGTKVYLSL----SGVYS-------------L 1222

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
             +G I  G I  ++  V GL V +     G+V    L +         Y E    PL  +
Sbjct: 1223 EKGTITLGCIKSVIPHV-GLQVTLPFGRTGKVSLFHLSD--------SYTE---QPLEDF 1270

Query: 1184 DEGQFVKCKVL-EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
              G+ V+C VL +  +T++      LSLR S     S N       ++ P   +  ++++
Sbjct: 1271 SVGKIVRCYVLSDEDKTIK------LSLRQSRVSPKSHNK------IEDP--EIASLDNI 1316

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRV 1299
              + +++GYVK++T+ G    LS  +   + L  ++   V       K    G+L+  +V
Sbjct: 1317 KKDQLIRGYVKSITATGILFRLSDSVVGCIPLQRITPVCVPDHSLCAKYIHPGQLLTAKV 1376

Query: 1300 LSVEPLSKRVEVTLKTSDSRTAS 1322
             S+      VE++L   D+   S
Sbjct: 1377 FSINKAENLVELSLLPEDTGNPS 1399



 Score =  300 bits (768), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 252/830 (30%), Positives = 402/830 (48%), Gaps = 105/830 (12%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLF---ILDSAYE---PSEL----QEFQRRF 1076
            + +G  V G V  V     L+ I  HL   +    I+D  +E   P+ L    Q+   R 
Sbjct: 1027 LCVGDVVKGTVKSVKPTHVLVAIDDHLMGSIHASQIVDDVFEGTFPTSLLKVGQKVTARV 1086

Query: 1077 HIGKAVTGH----VLSINKEKKLLRLVLRPFQDGISDKTV-----DISNDNMQTFIHEGD 1127
              G+ +  H    +   +  +    L +RP +    +KTV     D S + ++ F   G 
Sbjct: 1087 IGGREIRTHRYLPITHPHFTQTWPELSVRPSELKGENKTVLGPEDDKSEETLKLF-KPGQ 1145

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVH--FTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
             V   + K  +    L V++ P + GR+H     LK   +  P + +  GQ         
Sbjct: 1146 TVTCFVKKYNTEKKWLEVEVTPDIRGRIHELLLSLKPKILKKPGNFFKTGQ--------- 1196

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
                      +  TV G       +  SL G+ S                LEK       
Sbjct: 1197 ---------ALIATVTGCDTTGTKVYLSLSGVYS----------------LEK------G 1225

Query: 1246 MIVQGYVKNVTSK-GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
             I  G +K+V    G  + L      KV L +LSD Y E P ++F +GK+V   VLS E 
Sbjct: 1226 TITLGCIKSVIPHVGLQVTLPFGRTGKVSLFHLSDSYTEQPLEDFSVGKIVRCYVLSDE- 1284

Query: 1305 LSKRVEVTLKTSDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
              K ++++L+ S     S +     EI +L N+    ++ G +K + + G+   + ++ +
Sbjct: 1285 -DKTIKLSLRQSRVSPKSHNKIEDPEIASLDNIKKDQLIRGYVKSITATGILFRLSDS-V 1342

Query: 1360 VGLCHVSELSE----DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1415
            VG   +  ++     DH    + I+  G+ +  K+  ++K +  + L +      N +  
Sbjct: 1343 VGCIPLQRITPVCVPDHSLCAKYIH-PGQLLTAKVFSINKAENLVELSLLPEDTGNPSII 1401

Query: 1416 LQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGS---------------L 1460
             ++ S E +   ++      R+S  E   V  +     +ED  S                
Sbjct: 1402 PELCSSETNTNLMKTRKRKRRNSENEQQQVKPKKRVHCTEDDDSGVEIYCREEEEEEKHN 1461

Query: 1461 VLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDE----------AKTIDEKNNRHA 1510
            VL   + R  +  L+++      +  N ++       E           +T  +K  +  
Sbjct: 1462 VLFFYQQRKEISRLKISTSFTWEEGLNVLNTAMLKPKEQSSDSEEEDDTETTTKKQTKKQ 1521

Query: 1511 KKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVE 1569
            ++ EK++ E+E+   E  L++ +  P+T D+F+RLV S+P+SS +W++YMAF L   ++E
Sbjct: 1522 RELEKQKAEKELSKLEAALMDPNRKPQTADDFDRLVLSNPDSSILWLQYMAFHLQATEIE 1581

Query: 1570 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVH 1629
            KAR++AERAL+TI+ REE EKLN+WVA  NLEN YG   EEA++KVF+RA+QY +P KV 
Sbjct: 1582 KARAVAERALKTISFREEQEKLNVWVALLNLENMYGT--EEALMKVFERAIQYNEPLKVF 1639

Query: 1630 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLS 1688
              L  +Y  +E+ K AD+L   M+K+F+    VW++    LLK+   E    ++ RAL  
Sbjct: 1640 QQLADIYTGSEKYKEADDLYNTMLKRFRQEKSVWVKYSTFLLKRGLLEAAHRLLPRALKC 1699

Query: 1689 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1748
            LP  +H+  IS+ A LEF+ G ++ G+++FE  LS YPKRTD+WS+Y+D  I+ G    +
Sbjct: 1700 LPEKEHVDVISKLAQLEFQFGDSEHGKAIFENTLSTYPKRTDIWSVYIDMIIKHGSQKEV 1759

Query: 1749 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            R +FER I LSL  KKMKF FK+YLEYEK  G  E ++ VK  A+EYVES
Sbjct: 1760 RDIFERVIHLSLAAKKMKFFFKRYLEYEKKYGTAETVQVVKAAALEYVES 1809



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 141/334 (42%), Gaps = 45/334 (13%)

Query: 1074 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1133
            R +  G+ V   +LS N   K +RL LRP       +   + +D +   +        ++
Sbjct: 320  RTYSPGEMVKACILSNNPTTKAIRLSLRPAFLQPGTQLSQLCSDRIGMIVE-----NSKV 374

Query: 1134 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
               LS  G + V       G + F   K++  SD    +   +F P      G   KC++
Sbjct: 375  KTFLSKTGAIFVLDD----GSLGFAHQKHL--SDSRLSFKPEKFKP------GNEHKCRI 422

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            +E S          LSL+ ++              +D P     K +D+ P  +++G + 
Sbjct: 423  IEYSLMDDMAL---LSLKQNI--------------MDAP---FLKYQDIHPGQVLEGTIL 462

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             +   G  + L+  +   V   +L+D  ++ PEK++  G  V  RVL   P ++++ +TL
Sbjct: 463  TLKPFGMHVKLTEYIKGLVPCLHLADVPLKQPEKKYSEGASVKCRVLVSIPEARKIVLTL 522

Query: 1314 KTSDSRTASQSEINNLSNLH---VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T   S++  L++      G I  G +     +G  +   N ++ GL   +EL  
Sbjct: 523  K----KTLVNSKLPILASYEDAKPGLITHGFVVCAREFGCIVKFYN-DIKGLVPKNELGL 577

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404
              +   + ++  G+ VKV +LK + E+ ++ L  
Sbjct: 578  PPLTPPQEVFYEGQVVKVMVLKCEPEQGKVLLSF 611



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 118/583 (20%), Positives = 230/583 (39%), Gaps = 77/583 (13%)

Query: 162 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           L SD     K   KD + ++ + L  GM++   V+   +  +++S     TG V +  + 
Sbjct: 58  LKSDERAALKINAKDFELLTAESLTDGMLLLGCVKEAHQLELVISLPNGLTGFVQVTQIC 117

Query: 222 NTF-PTTNWKNDYNQHKK--------------VNARILFVDPTS---RAVGLTLNPYLLH 263
           + +    N +   ++H +              V   ++ ++ T    R++ L++NP  ++
Sbjct: 118 DAYNKILNTQVATDEHLEDLSSLSDLFFPGMVVRCAVVNLEKTKAGRRSIQLSVNPKDVN 177

Query: 264 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP-----AYVTISDV-AEEEVR 317
                S ++ G +         D G  + + +P+     P      Y+  ++  AE ++ 
Sbjct: 178 KALNSSTLRPGMLLSGCIASVEDHGYLIDIGVPAAKAFLPRQKAQGYLQSNNKGAELKIG 237

Query: 318 K-----LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 372
           +     +E     G  +R+ I        +AT     S         S++ PG+VVK +V
Sbjct: 238 QYLNCLIEDVKNNGRIIRISISQAEIAAAIATEEQNWSL--------SNLLPGLVVKAQV 289

Query: 373 IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVT 430
             V   G  + F      +    H +  +    G+ +  G  +   +L     +K I ++
Sbjct: 290 REVTPSGMSLGFLSSFTGIVDFMHKNHLK----GRTYSPGEMVKACILSNNPTTKAIRLS 345

Query: 431 HKKTLVKSKLAILSSYAEATDRLITHGWI-TKIEKHGCFVRFYNGVQGFAPRSELGLDPG 489
            +   ++    +    ++    ++ +  + T + K G      +G  GFA +  L     
Sbjct: 346 LRPAFLQPGTQLSQLCSDRIGMIVENSKVKTFLSKTGAIFVLDDGSLGFAHQKHLSDSRL 405

Query: 490 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD 544
                 +  G   KCRI   I  S   +++ +     + +   +K      G ++ G + 
Sbjct: 406 SFKPEKFKPGNEHKCRI---IEYSLMDDMALLSLKQNIMDAPFLKYQDIHPGQVLEGTIL 462

Query: 545 VVTPNAVVVYVIAKGYSKGTIPTEHLAD---------HLEHATVMKSVIKPGYEFDQLLV 595
            + P    ++V    Y KG +P  HLAD         + E A+V   V          LV
Sbjct: 463 TLKPFG--MHVKLTEYIKGLVPCLHLADVPLKQPEKKYSEGASVKCRV----------LV 510

Query: 596 LDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
              E+  ++L+ K +L+NS  +LP  AS+    P  + HG+V    E GC V+F   + G
Sbjct: 511 SIPEARKIVLTLKKTLVNS--KLPILASYEDAKPGLITHGFVVCAREFGCIVKFYNDIKG 568

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
             P+++          + +Y GQ V+  +L    E G++ LS 
Sbjct: 569 LVPKNELGLPPLTPPQEVFYEGQVVKVMVLKCEPEQGKVLLSF 611



 Score = 47.4 bits (111), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 6/153 (3%)

Query: 1321 ASQSE--INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
            A+Q E  + N S+L  G ++ G +K +  YG+F+      L G+   S +S+  V + + 
Sbjct: 715  AAQEEHAVKNFSDLEPGLLLTGFVKNIMPYGVFVEFP-YGLTGMAPKSAMSDKFVTDTKD 773

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMK-SSYFKNDADNLQMSSEEESDEAIEEVGSYNRS 1437
             +  G+ V  K+  +D+EK+RI L +K S     D+ +   S   +  + ++E+ S  + 
Sbjct: 774  HFVIGQTVIAKVTNIDEEKQRILLSLKLSDCSSEDSVSQSFSLLLQYFKELQEIKSIMKK 833

Query: 1438 SLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1470
               ++SSVA +  +++      LV+ ++E+  S
Sbjct: 834  R--DDSSVAQRLCEIKPAQKLELVVHKVETDGS 864


>gi|50303899|ref|XP_451897.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641029|emb|CAH02290.1| KLLA0B08239p [Kluyveromyces lactis]
          Length = 1729

 Score =  385 bits (988), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 357/1212 (29%), Positives = 581/1212 (47%), Gaps = 153/1212 (12%)

Query: 642  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701
            GC + F   +  F P  +  +       +   +GQSV   IL+ + E  RI  S K S  
Sbjct: 607  GCVISFFNNIKAFVPNKEISEAFVKKPQEHLRLGQSVLVKILNHDFERNRIIASCKISAE 666

Query: 702  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 759
            SS+      E  ++ + I               ++  +I    +  + ES D G+  V+ 
Sbjct: 667  SSSKQKSAIESLVVGKSI---------------IDAIVIEKTKDSVIVESKDSGLRGVIY 711

Query: 760  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
                SD    I  ++ +   ++  S ++  +LD      + ++S K   I    +     
Sbjct: 712  TGHLSD--DRIEQNRASQKKLKINSEVRGLVLDKDIRTHVFNMSCKKSLIKDAEDGTLPL 769

Query: 820  QAQKKKRKREASKDLGVHQTVNAIVEIVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFP 877
                 K K +     G  ++V+     V  N  ++ L LP Y      A   D +  K  
Sbjct: 770  SFSDIKNKDKTEPMHGYVKSVSDRGVFVAFNGKFVGLVLPSY-----AAETRDIDIHK-- 822

Query: 878  QKQFLNGQSVIATVMALPSSSTAGRLLL-LLKAISETETSSS-------KRAKKKSSYDV 929
             K ++N QSV  TV  L +     R LL +LK  ++ +  +S       K  K  S + +
Sbjct: 823  -KYYIN-QSV--TVYLLRTDEEHERFLLTILKQKTDVKKINSSVINPVDKSIKDLSDFTI 878

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 987
            G + +A IT +K  +L +      HGRI I+EV D   ++ E     S +K   +++ R+
Sbjct: 879  GKVTKATITSVKKNQLNVTLADNVHGRISISEVFDSFEDIKEQKAPLSVYKKNDSLSVRV 938

Query: 988  IA----KSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1038
            I     KS K         KS L ELS KPS LT S +  K L    D +  Q   G++ 
Sbjct: 939  IGFHDIKSRKFLPISHTTSKSHLVELSAKPSSLT-SPVSEKKL---KDFTPEQTTFGFIN 994

Query: 1039 KVDNEWALLTISRHLKAQLFILDSAYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLR 1097
               N+ A LTI+  +KA+L I + + E  +     + ++ IG AV   V SI+ E   L 
Sbjct: 995  NYSNDTAWLTITPTVKAKLPIFEISDEGHDFSLPIEEKYPIGTAVRVTVKSIDTEHDSLV 1054

Query: 1098 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1157
            +  R      S     IS       I EGD++  R+  +      +++ +G  + G V F
Sbjct: 1055 VSAR------SHAISSISE------IKEGDVLPARVISVQDTY--VLLSLGKDVTG-VSF 1099

Query: 1158 TELKNICVSDPLSGYDEGQFDPLSGYDEGQ--FVKCKVLEISRTVRGTFHVELSLRSSLD 1215
                   ++D L  Y     D    YD  +   V   VL +         + LSLRSS  
Sbjct: 1100 -------ITDALDDYSLSLKDV---YDSKKKNIVSATVLNVDI---DNNKINLSLRSS-- 1144

Query: 1216 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1275
              S  + + +S+             +L    IV+G+VK++T KG FI LS  L A V +S
Sbjct: 1145 --SPKDRTIISS------------SELKRGDIVRGFVKSITDKGVFISLSSVLQAFVPVS 1190

Query: 1276 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1335
             L+D +++  +K F  G+ V G+V++ +    RV +TL+ S+      + + + S+++VG
Sbjct: 1191 KLTDAFIKDWKKFFRRGQSVVGKVVNCDN-DDRVLLTLRESEVN-GQLNVLKSYSDINVG 1248

Query: 1336 DIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1394
            DI  G +K V  +G+F+ ++ T N+ GL H SE+++  +DN++ ++  G+KVK  +LK +
Sbjct: 1249 DIFQGSVKNVTDFGVFVKLDGTVNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIVLKTN 1308

Query: 1395 KEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1454
             EK++ISLG+K+SYF N                 E+  +    +  E     V D+D++ 
Sbjct: 1309 PEKKQISLGLKASYFTN-----------------EKPETVEEGNEEEEELEGVDDLDIDM 1351

Query: 1455 EDGGSLVLAQIESRASVPPLEVNLDDEQ------------------PDMDNGISQNQGHT 1496
            EDG     A  +        +  +DD Q                  P   +G+S + G  
Sbjct: 1352 EDGQKESDASDKDEDKDEDQDEIMDDAQFGHSDSEAEDTTRPKNSAPVSTDGLSLSTGFD 1411

Query: 1497 DEAKTIDEKNNRHAKKKEKEE-------REQEIRAAEERLLEKDA--PRTPDEFERLVRS 1547
              A  +D+  +     +E E+       ++++ +  +++ ++ +   P +  +FERL+  
Sbjct: 1412 WTASILDQAQDEEESSEEDEDFIKSRKQKKKKTQIVQDKTVDINTRIPESVGDFERLIMG 1471

Query: 1548 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1607
            +PNSS VW+ YMAF L +++VEKAR I ERAL+TIN REE+EKLNIW+A  NLEN +G  
Sbjct: 1472 NPNSSVVWMNYMAFHLQLSEVEKAREIVERALKTINFREESEKLNIWIASLNLENTFGT- 1530

Query: 1608 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRR 1666
             EE V  VF +A QY D   +H+ LL +Y+ +E+ + A EL     KKF      +W+  
Sbjct: 1531 -EETVEDVFTKACQYMDSFTMHMKLLSIYQMSEKIEKAKELFKITAKKFGSEKVSIWVAW 1589

Query: 1667 VQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1725
             + L+     +    V+  +L SLP   HI+ + + A LEF  G  ++GRS+FEG+L++ 
Sbjct: 1590 GEFLIDNNLIDEAHEVLGNSLKSLPTRNHIEVVRKFAQLEFSKGDPEQGRSLFEGLLADA 1649

Query: 1726 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1785
            PKR DLW++Y+DQEI+ G+      LFER I+  +  K+ KF F K+L++E+   +++ +
Sbjct: 1650 PKRVDLWNVYIDQEIKHGEKSKAEDLFERVITKKITRKQAKFFFNKWLQFEEQKDDQKLV 1709

Query: 1786 EYVKQKAMEYVE 1797
            +YVK KA EYV+
Sbjct: 1710 DYVKAKAAEYVK 1721



 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 203/757 (26%), Positives = 345/757 (45%), Gaps = 90/757 (11%)

Query: 5   GVVAEVNEKDLVICLPGGLRG----------LARAADALDPILDNEIEANEDNL------ 48
           G +  +++ +L I L  GL G          + +  + LD  ++++ E NED+       
Sbjct: 122 GQIQSISKHELKISLVDGLHGYVSLTDISEQMTKILENLDESMESDDEKNEDSEYDSSDD 181

Query: 49  ---------LPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETV 96
                    LP +   F +GQ + C+V Q +   +    +K+ LS+  S++      + +
Sbjct: 182 ESDITTPKELPDLNKYFKIGQWLRCMV-QNNSALESNKNKKLDLSIEPSVV-NVFEDDDL 239

Query: 97  QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT 156
            +   L   +KSIEDHG IL  G+ + TGF+ + ++ E S +   PG++    V    R+
Sbjct: 240 AKNCPLQCSLKSIEDHGAILDIGIENLTGFISKKDIPEFSSL--LPGMVFLATVTK--RS 295

Query: 157 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
            + V ++ D   ++   TK  K  SID +VPG  +    Q+I  +GV+       T  + 
Sbjct: 296 GRTVNVNLD---LASKNTKVEKISSIDAIVPGQSIDFLPQTITNHGVIGKAFGLITAFLP 352

Query: 217 IFHLQNTFPTTNWKNDYNQHKKVNARIL---FVDPTSRAVGLTLNPYL--LHNRAPPSHV 271
           + H  N F   + K+ Y+    VNARIL    V    +   ++  P++  LH +   +  
Sbjct: 353 LPH-SNFFTVEDLKHHYSIGDLVNARILATTIVKSGDKVAVVSTQPHIISLHPKLQETEA 411

Query: 272 ----KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD--VAEEEVRKLEKKYKE 325
                VG I+D   V   D              S   YV+I++  V +  + K  +    
Sbjct: 412 LESFPVGYIFDSCTVKGRD--------------SQFFYVSINNEQVGQIHLSKAGETEPT 457

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ- 383
           G+ V+ RILG+ +++ L T     +  +      SD+  G V+   +++ V   G  ++ 
Sbjct: 458 GT-VKARILGYNNVDKLYTLTSDPALLDVKYLRSSDIPAGEVLSACEIVTVSGKGIELKI 516

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS-KRITVTHKKTLVKSKLAI 442
           F    KA  P  H+S+  +V P +KFK+G+++  RVL V S  R+TVT KK++V +    
Sbjct: 517 FNDQFKAFVPPLHISDTRLVYPERKFKIGSKVKGRVLNVDSVGRVTVTLKKSIVNADEES 576

Query: 443 LSSYAEATD-------RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 495
           ++   +  D        L T G +   + +GC + F+N ++ F P  E+      +P   
Sbjct: 577 VTLVCKNDDIQTVESQELKTIGTVEIFKPNGCVISFFNNIKAFVPNKEISEAFVKKPQEH 636

Query: 496 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNA 550
             +GQ V  +I++      RI  S  +     S+     + LV   S++  +V   T ++
Sbjct: 637 LRLGQSVLVKILNHDFERNRIIASCKISAESSSKQKSAIESLVVGKSIIDAIVIEKTKDS 696

Query: 551 VVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSA 607
           V+V     G  +G I T HL+D  +E     +  +K   E  + LVLD +  +    +S 
Sbjct: 697 VIVESKDSGL-RGVIYTGHLSDDRIEQNRASQKKLKINSEV-RGLVLDKDIRTHVFNMSC 754

Query: 608 KYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 662
           K SLI  A+   LP   SD  +      +HGYV ++ + G FV F G+  G    S A +
Sbjct: 755 KKSLIKDAEDGTLPLSFSDIKNKDKTEPMHGYVKSVSDRGVFVAFNGKFVGLVLPSYAAE 814

Query: 663 GQRADLSKTYYVGQSVRSNILDVNSETGRITLS-LKQ 698
            +  D+ K YY+ QSV   +L  + E  R  L+ LKQ
Sbjct: 815 TRDIDIHKKYYINQSVTVYLLRTDEEHERFLLTILKQ 851



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 36/196 (18%)

Query: 622  ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 681
            +S +    +V G+V +I + G F+     L  F P SK  D    D  K +  GQSV   
Sbjct: 1154 SSELKRGDIVRGFVKSITDKGVFISLSSVLQAFVPVSKLTDAFIKDWKKFFRRGQSVVGK 1213

Query: 682  ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG--SELKWVEGFI 739
            +++ +++  R+ L+L++S                            NG  + LK      
Sbjct: 1214 VVNCDND-DRVLLTLRESEV--------------------------NGQLNVLKSYSDIN 1246

Query: 740  IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 792
            +G + +G V    DFGV V  +   +V G     ++A A +++       G  ++A +L 
Sbjct: 1247 VGDIFQGSVKNVTDFGVFVKLDGTVNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIVLK 1306

Query: 793  VAKAERLVDLSLKTVF 808
                ++ + L LK  +
Sbjct: 1307 TNPEKKQISLGLKASY 1322



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 356  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
            + + S++K G +V+G V ++   G  +     ++A  P+  +++  I    K F+ G  +
Sbjct: 1151 IISSSELKRGDIVRGFVKSITDKGVFISLSSVLQAFVPVSKLTDAFIKDWKKFFRRGQSV 1210

Query: 416  VFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 473
            V +V+   +  R+ +T +++ V  +L +L SY++     I  G +  +   G FV+    
Sbjct: 1211 VGKVVNCDNDDRVLLTLRESEVNGQLNVLKSYSDINVGDIFQGSVKNVTDFGVFVKLDGT 1270

Query: 474  -GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 518
              V G A +SE+         +++  G  VK  ++ + P  ++I+L
Sbjct: 1271 VNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIVLKTNPEKKQISL 1316



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 19/270 (7%)

Query: 92   SLETVQEGMVLTAYVKSIEDHGYILHF-----GLPSFTGFLPRNNLAENSGIDVKPGLLL 146
            S+  ++EG VL A V S++D   +L       G+   T  L   +L+     D K   ++
Sbjct: 1064 SISEIKEGDVLPARVISVQDTYVLLSLGKDVTGVSFITDALDDYSLSLKDVYDSKKKNIV 1123

Query: 147  QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 206
               V ++D     + LS     +     KD   IS   L  G +V   V+SI + GV +S
Sbjct: 1124 SATVLNVDIDNNKINLS-----LRSSSPKDRTIISSSELKRGDIVRGFVKSITDKGVFIS 1178

Query: 207  FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR- 265
              +     V +  L + F   +WK  + + + V  +++  D   R + LTL    ++ + 
Sbjct: 1179 LSSVLQAFVPVSKLTDAF-IKDWKKFFRRGQSVVGKVVNCDNDDRVL-LTLRESEVNGQL 1236

Query: 266  ---APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 322
                  S + VGDI+  S     D G+ + LD     V+       S+VA+ ++  L+  
Sbjct: 1237 NVLKSYSDINVGDIFQGSVKNVTDFGVFVKLD---GTVNVTGLAHKSEVADAKIDNLQNL 1293

Query: 323  YKEGSCVRVRILGFRHLEGLATGILKASAF 352
            + EG  V+  +L     +   +  LKAS F
Sbjct: 1294 FGEGDKVKAIVLKTNPEKKQISLGLKASYF 1323



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 132/303 (43%), Gaps = 30/303 (9%)

Query: 1126 GDIVGGRI---SKILSGVGGLVVQIGPH---LYGRVHFTE------LKNICVSDPLSGYD 1173
            GD+V  RI   + + SG    VV   PH   L+ ++  TE      +  I  S  + G D
Sbjct: 371  GDLVNARILATTIVKSGDKVAVVSTQPHIISLHPKLQETEALESFPVGYIFDSCTVKGRD 430

Query: 1174 EGQFDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1231
              QF  +S  +E  GQ    K  E   T  GT    +   +++D + +  S     DV  
Sbjct: 431  -SQFFYVSINNEQVGQIHLSKAGETEPT--GTVKARILGYNNVDKLYTLTSDPALLDV-- 485

Query: 1232 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFP 1290
              K+L   +  +  ++    +  V+ KG  + + + +  A V   ++SD  +  PE++F 
Sbjct: 486  --KYLRSSDIPAGEVLSACEIVTVSGKGIELKIFNDQFKAFVPPLHISDTRLVYPERKFK 543

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI------VIGQIKR 1344
            IG  V GRVL+V+ +  RV VTLK S      +S      N  +  +       IG ++ 
Sbjct: 544  IGSKVKGRVLNVDSVG-RVTVTLKKSIVNADEESVTLVCKNDDIQTVESQELKTIGTVEI 602

Query: 1345 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404
             +  G  I+  N N+       E+SE  V   +   R G+ V VKIL  D E+ RI    
Sbjct: 603  FKPNGCVISFFN-NIKAFVPNKEISEAFVKKPQEHLRLGQSVLVKILNHDFERNRIIASC 661

Query: 1405 KSS 1407
            K S
Sbjct: 662  KIS 664



 Score = 40.4 bits (93), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 92/425 (21%), Positives = 169/425 (39%), Gaps = 57/425 (13%)

Query: 102  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV-KPGLLLQGVVRSIDRTRK-- 158
            +  YVKS+ D G  + F    F G +  +  AE   ID+ K   + Q V   + RT +  
Sbjct: 783  MHGYVKSVSDRGVFVAFN-GKFVGLVLPSYAAETRDIDIHKKYYINQSVTVYLLRTDEEH 841

Query: 159  ----VVYLSSDPD------TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 208
                +  L    D      +V   V K +K +S D  + G +    + S+ +N + ++  
Sbjct: 842  ERFLLTILKQKTDVKKINSSVINPVDKSIKDLS-DFTI-GKVTKATITSVKKNQLNVTLA 899

Query: 209  TYFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARIL-FVDPTSRA----------- 252
                G + I  + ++F     +      Y ++  ++ R++ F D  SR            
Sbjct: 900  DNVHGRISISEVFDSFEDIKEQKAPLSVYKKNDSLSVRVIGFHDIKSRKFLPISHTTSKS 959

Query: 253  --VGLTLNPYLLHNRAPPSHVKVGDIYDQSK----VVRVDRGLGLLLDIPSTPVSTPAYV 306
              V L+  P  L   +P S  K+ D   +      +         L   P+     P + 
Sbjct: 960  HLVELSAKPSSL--TSPVSEKKLKDFTPEQTTFGFINNYSNDTAWLTITPTVKAKLPIF- 1016

Query: 307  TISDVAEEEVRKLEKKYKEGSCVRVRI--LGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
             ISD   +    +E+KY  G+ VRV +  +   H        L  SA    + + S++K 
Sbjct: 1017 EISDEGHDFSLPIEEKYPIGTAVRVTVKSIDTEH------DSLVVSARSHAISSISEIKE 1070

Query: 365  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH-MSEFEI----VKPGKKFKVGAELVFRV 419
            G V+  +VI+V     ++     V  +  +   + ++ +    V   KK  + +  V  V
Sbjct: 1071 GDVLPARVISVQDTYVLLSLGKDVTGVSFITDALDDYSLSLKDVYDSKKKNIVSATVLNV 1130

Query: 420  LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
              + + +I ++ + +  K +  I SS  +  D  I  G++  I   G F+   + +Q F 
Sbjct: 1131 -DIDNNKINLSLRSSSPKDRTIISSSELKRGD--IVRGFVKSITDKGVFISLSSVLQAFV 1187

Query: 480  PRSEL 484
            P S+L
Sbjct: 1188 PVSKL 1192


>gi|190348684|gb|EDK41184.2| hypothetical protein PGUG_05282 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1674

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 390/1496 (26%), Positives = 687/1496 (45%), Gaps = 183/1496 (12%)

Query: 362  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
            ++PG++V   V  +   G   +  G V     L ++ E+++     KF +G  +  RV+ 
Sbjct: 301  IQPGIIVDALVAEITKEGITTKVFGMVDGTISLSNIGEYDLDSLNHKFTIGNSIKARVIA 360

Query: 422  VKSKRITVTHKKTLVKSKLA-ILS-SYAEATDRLITH--GWI-TKIEKHGC---FVRFYN 473
            V  K  T    K LV S L  ILS    E TD L     G++  ++E  G    ++    
Sbjct: 361  VLLKGGT----KKLVLSILPRILSLDSQENTDALEAFPIGFVFDQVEVIGLDSNYIFVST 416

Query: 474  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS--------SIPASRRINLSFMMKPT 525
            G   +  +  +      +    Y VG   K R++         ++    +I  +  M P+
Sbjct: 417  GTSSYHGQVHISKINQEKVIDDYFVGSKHKARVIGLNKFEGLLTLTMDPKIIDTKFMVPS 476

Query: 526  RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMK 581
            ++   + +  G ++      V P+   + V         +P EH++D    + E    + 
Sbjct: 477  QIPVGEYINGGEIIK-----VLPDGAGIQVKIFNDFDAFVPPEHMSDVRLVYPERKYKVG 531

Query: 582  SVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIE 640
            S IK         VL    S + ++ K +L+N    ++ S+             V   + 
Sbjct: 532  SKIKG-------RVLKVHGSKIFITLKKTLVNIEDDEVLSNFESAEIGLKTPATVEKFVH 584

Query: 641  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
             G  V F G L  F P+++  +    D       GQ+V   I+D +    R+ ++LKQ+ 
Sbjct: 585  NGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIMDRDETQQRLIVTLKQND 644

Query: 701  CS----STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHESNDFG 755
             +    S  +S +    ++E  I  ++ SK   S +  +EG  + G +  G++ + N   
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASI--VEKSKDKDSVIVEIEGSNLRGVIYAGQLSDGN--- 699

Query: 756  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 815
                +E+   +Y            +++G  ++A +L+     R V LS K  FI+     
Sbjct: 700  ----YEQTRALY----------KKIQAGDKLEAVVLERDMKTRSVILSAKQSFIN----- 740

Query: 816  NSNRQAQKKKRKREASKDLGVHQTV-NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 874
                   K  +      D+ V   V    ++ V    L ++       +  A  +  N  
Sbjct: 741  -----GAKNNQIPSQFSDVTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPN 795

Query: 875  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE--------TSSSKRAKKKSS 926
            +   K+F   QSV   V+ L + +   R LL L +  ++E          S+K  K  + 
Sbjct: 796  EDILKRFYKNQSVSCRVIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTK--KLITD 851

Query: 927  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVT 984
            Y  G+  QA+I  IK  +L ++      GR+ IT+  +  S++ +     S F   + ++
Sbjct: 852  YTPGAKTQAKIKSIKGTQLNVQLADNLQGRLDITQCFEKWSDIKDKNQPLSQFHKDEILS 911

Query: 985  ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG---SKLLFEECDVSIGQRVTGYVYKVD 1041
             R++      D K      +S + S  T+ E+       + E  DV +G     +V  + 
Sbjct: 912  VRVLGYH---DAKNHTFLPISHRKSKNTILELTLLEKDPITEIKDVKVGSEHVAFVNNLA 968

Query: 1042 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1101
              +  +++S  +K ++  +D + E S  ++ + R  IG A+   V  I++E K + L  R
Sbjct: 969  RGFVWVSMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNIILTSR 1028

Query: 1102 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1161
                     TV    D     +        R+ K+L     ++V++   +    + T   
Sbjct: 1029 KH-------TVTKFED-----VELNKQYPARVLKVLPSF--VLVELAHDVVASSYIT--- 1071

Query: 1162 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1221
                 D L+ Y     +     D   +    VL + +  +    + +SLR        TN
Sbjct: 1072 -----DALNDYSSALNEVFHAND---YTTATVLAVDKDSK---KISVSLR--------TN 1112

Query: 1222 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1281
             +     VD   K +  +EDL    +V+G+VKNV + G ++ L R +   V +S+LSD Y
Sbjct: 1113 KA-----VD---KVINSVEDLQRGDVVKGFVKNVANNGVYVSLGRSVHGLVRVSDLSDSY 1164

Query: 1282 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL---SNLHVGDIV 1338
            ++  +K F   + V G+V++ +    RV +TLK S+       E+N L    +L  G++ 
Sbjct: 1165 LKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESEV----NGELNVLKKFEDLKEGEVY 1219

Query: 1339 IGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1397
             G +++V  +G+F+ ++ T N+ GLCH SE++++   +++ ++  G++VKVKIL ++ EK
Sbjct: 1220 EGSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEK 1279

Query: 1398 RRISLGMKSSYFKNDA-------DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDM 1450
            +++SLGMK SYF  +A       D+++M+  EE+  +  E    +   ++E +  A  D+
Sbjct: 1280 KQLSLGMKVSYFAPEATQNEDSDDDVEMAESEEATPSASESSDESDEEIVEGAFEADSDV 1339

Query: 1451 DMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHA 1510
            D + E+  ++V                      D   G+S N G    A  +D+      
Sbjct: 1340 DHDDEETSNVV--------------------AEDSGMGLSTN-GFDWTASILDQAQESDE 1378

Query: 1511 K-------KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1563
                     K+K++R  ++   +   +   AP++  +FER++  SPNSS +W+ YM+F L
Sbjct: 1379 SSDDEDFVNKKKKKRSTKVVEDKTADINTRAPQSVSDFERMLIGSPNSSVLWMNYMSFQL 1438

Query: 1564 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1623
             ++++EKAR I ERAL+TIN REE EKLNIW+A  NLEN +    +E++   F+R+ QY 
Sbjct: 1439 QLSEIEKAREIGERALKTINYREEQEKLNIWIALLNLENTFDT--KESLEDTFRRSCQYM 1496

Query: 1624 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVV 1682
            +P  +H  L  +Y  +E+   A  L   MIKKF  +  VW+     LL +Q  + V   +
Sbjct: 1497 EPLTMHQKLASIYTLSEKFDEATRLYKVMIKKFSKNVSVWVAYASYLLDRQMNDEVHEAL 1556

Query: 1683 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1742
             +A+ +LP  + I+ + + A LEF  G  ++GRS+FEG++++ PKR DLW++YLDQEI+L
Sbjct: 1557 AKAMQALPSKESIEVVKKFAQLEFTKGDPEQGRSLFEGLMADAPKRIDLWNVYLDQEIKL 1616

Query: 1743 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             D   +  LFER I+  L  K+ KF F K+L+YE+   +E+    VK KA EYVE+
Sbjct: 1617 NDKSKVENLFERLITKKLTKKQAKFFFTKWLKYEEDQNDEKSGARVKAKAAEYVEA 1672



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 172/681 (25%), Positives = 310/681 (45%), Gaps = 42/681 (6%)

Query: 45  EDNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 101
           +DN LP   +IF  G+ +   V + +  + +  K++I  ++    + + +  E +  G +
Sbjct: 159 KDNELPDLQSIFKAGEWLRAKVTEAELSQSK--KKRIQFTIEPENVNESIEDEDLIPGNL 216

Query: 102 LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP---GLLLQGVVRSIDRTRK 158
           L   V S+ED G IL+ G+   +GF+    L+ N+ ID++    G ++   + +   TR 
Sbjct: 217 LQCSVVSVEDRGVILNTGVSGKSGFISNKELS-NANIDLQSLSEGYVMMTSIAAKPTTR- 274

Query: 159 VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 218
            + L     +VS    K     S+D + PG++V   V  I + G+         GT+ + 
Sbjct: 275 TISLRPATSSVSSKKNKVSNISSVDAIQPGIIVDALVAEITKEGITTKVFGMVDGTISLS 334

Query: 219 HLQNTFPTTNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLL-----HNRAPPSHV 271
           ++   +   +  + +     + AR++ V     ++ + L++ P +L      N       
Sbjct: 335 NI-GEYDLDSLNHKFTIGNSIKARVIAVLLKGGTKKLVLSILPRILSLDSQENTDALEAF 393

Query: 272 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 331
            +G ++DQ +V+ +D      + + +   S    V IS + +E   K+   Y  GS  + 
Sbjct: 394 PIGFVFDQVEVIGLDSNY---IFVSTGTSSYHGQVHISKINQE---KVIDDYFVGSKHKA 447

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGV 388
           R++G    EGL T  +     +      S +  G  + G ++I V  D  G  V+     
Sbjct: 448 RVIGLNKFEGLLTLTMDPKIIDTKFMVPSQIPVGEYINGGEIIKVLPDGAGIQVKIFNDF 507

Query: 389 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYA 447
            A  P  HMS+  +V P +K+KVG+++  RVL V   +I +T KKTLV      +LS++ 
Sbjct: 508 DAFVPPEHMSDVRLVYPERKYKVGSKIKGRVLKVHGSKIFITLKKTLVNIEDDEVLSNFE 567

Query: 448 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 507
            A   L T   + K   +G  V F+  ++ F P++E+      +       GQ V  RIM
Sbjct: 568 SAEIGLKTPATVEKFVHNGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIM 627

Query: 508 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG-------VVDVVTPNAVVVYVIAKGY 560
                 +R  L   +K   V++     + S+V G       +V+       V+  I    
Sbjct: 628 DRDETQQR--LIVTLKQNDVTKAQQSAVSSVVPGKTIVEASIVEKSKDKDSVIVEIEGSN 685

Query: 561 SKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQ-- 616
            +G I    L+D + E    +   I+ G + + +++  D ++ +++LSAK S IN A+  
Sbjct: 686 LRGVIYAGQLSDGNYEQTRALYKKIQAGDKLEAVVLERDMKTRSVILSAKQSFINGAKNN 745

Query: 617 QLPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           Q+PS  S +   + V+ GY+ ++   G FV F G+LTG      A      D+ K +Y  
Sbjct: 746 QIPSQFSDVTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPNEDILKRFYKN 805

Query: 676 QSVRSNILDVNSETGRITLSL 696
           QSV   ++ +++E  R  LSL
Sbjct: 806 QSVSCRVIRLDNENKRFLLSL 826



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 202/928 (21%), Positives = 391/928 (42%), Gaps = 112/928 (12%)

Query: 504  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 563
             R +S  PA+  ++ S   K + +S  D ++ G +V  +V  +T   +   V   G   G
Sbjct: 273  TRTISLRPATSSVS-SKKNKVSNISSVDAIQPGIIVDALVAEITKEGITTKVF--GMVDG 329

Query: 564  TIPTEHLA----DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP 619
            TI   ++     D L H   + + IK        ++L   +  L+LS    +++   Q  
Sbjct: 330  TISLSNIGEYDLDSLNHKFTIGNSIKARV---IAVLLKGGTKKLVLSILPRILSLDSQEN 386

Query: 620  SDASHIHPNSVVHGYVCNIIET-GCFVRFLGRLTGFAPRSKAVDGQRADLSKT---YYVG 675
            +DA    P     G+V + +E  G    ++   TG +     V   + +  K    Y+VG
Sbjct: 387  TDALEAFP----IGFVFDQVEVIGLDSNYIFVSTGTSSYHGQVHISKINQEKVIDDYFVG 442

Query: 676  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
               ++ ++ +N   G +TL++        D   +   F++  +I +      NG E+  +
Sbjct: 443  SKHKARVIGLNKFEGLLTLTM--------DPKIIDTKFMVPSQIPV--GEYINGGEI--I 490

Query: 736  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 795
            +    G+ I+ K+   NDF   V  E  SDV       +      + GS I+  +L V  
Sbjct: 491  KVLPDGAGIQVKIF--NDFDAFVPPEHMSDVRLVYPERKY-----KVGSKIKGRVLKVHG 543

Query: 796  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 855
            ++  + L    V I+   E  SN ++ +   K  A+ +  VH    AIV       L   
Sbjct: 544  SKIFITLKKTLVNIED-DEVLSNFESAEIGLKTPATVEKFVHN--GAIVSFF--GNLRAF 598

Query: 856  LPEYNHSIGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETE 914
            LP+  + I    V D        K FL  GQ+V   +M      T  RL++ LK   + +
Sbjct: 599  LPK--NEISETFVKD-------AKDFLKKGQTVNVRIM--DRDETQQRLIVTLK---QND 644

Query: 915  TSSSKRAKKKSSYDVGSLVQAEITE--------IKPLELRLKFGIGFHGRIHITEVNDDK 966
             + ++++   S     ++V+A I E        I  +E     G    G I+  +++D  
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASIVEKSKDKDSVIVEIE-----GSNLRGVIYAGQLSDGN 699

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1026
                  L+   + G  + A ++ +    DMK   +  LS K S +  ++  +++  +  D
Sbjct: 700  YEQTRALYKKIQAGDKLEAVVLER----DMKTRSVI-LSAKQSFINGAK-NNQIPSQFSD 753

Query: 1027 VSIGQRV-TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            V++  +V TGY+  V N    +     L   +    +   P+E  +  +RF+  ++V+  
Sbjct: 754  VTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPNE--DILKRFYKNQSVSCR 811

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG- 1142
            V+ ++ E K  R +L    +  S+   ++ N  D+ +  I +        +KI S  G  
Sbjct: 812  VIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTKKLITDYTPGAKTQAKIKSIKGTQ 869

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
            L VQ+  +L GR+  T+    C        D+ Q  PLS + + + +  +VL        
Sbjct: 870  LNVQLADNLQGRLDITQ----CFEKWSDIKDKNQ--PLSQFHKDEILSVRVLGYHDAKNH 923

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
            TF + +S R S + +      +L+     P   + +I+D+        +V N+     ++
Sbjct: 924  TF-LPISHRKSKNTIL-----ELTLLEKDP---ITEIKDVKVGSEHVAFVNNLARGFVWV 974

Query: 1263 MLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
             +S  +  +V   +LSD     E  E   PIG  +  +V  ++   K +   + TS   T
Sbjct: 975  SMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNI---ILTSRKHT 1031

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDHVDNIETI 1379
             ++ E   L+  +   +    +K + S   F+ +E   ++V   ++++   D+   +  +
Sbjct: 1032 VTKFEDVELNKQYPARV----LKVLPS---FVLVELAHDVVASSYITDALNDYSSALNEV 1084

Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + A +     +L VDK+ ++IS+ ++++
Sbjct: 1085 FHANDYTTATVLAVDKDSKKISVSLRTN 1112



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 126/299 (42%), Gaps = 40/299 (13%)

Query: 143  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG---ISIDLLVPGMMVSTRVQSIL 199
            G  ++  V+ ID   K + L+S   TV+K    +L       +  ++P  ++      ++
Sbjct: 1006 GAAIKAKVKQIDEEHKNIILTSRKHTVTKFEDVELNKQYPARVLKVLPSFVLVELAHDVV 1065

Query: 200  ENGVMLSFLTYFTGTVD-IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 258
             +  +   L  ++  ++ +FH           NDY       A +L VD  S+ + ++L 
Sbjct: 1066 ASSYITDALNDYSSALNEVFH----------ANDY-----TTATVLAVDKDSKKISVSLR 1110

Query: 259  PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVA 312
                 N+A    +   +   +  VV+     G + ++ +  V      S    V +SD++
Sbjct: 1111 T----NKAVDKVINSVEDLQRGDVVK-----GFVKNVANNGVYVSLGRSVHGLVRVSDLS 1161

Query: 313  EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVK 369
            +  ++  +K +K+   V  +++  +  EG     LK S   G   ++    D+K G V +
Sbjct: 1162 DSYLKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESEVNGELNVLKKFEDLKEGEVYE 1220

Query: 370  GKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
            G V  V  FG  V+  G   V  LC    +++ + V     F  G  +  ++LG+ S++
Sbjct: 1221 GSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEK 1279


>gi|392597567|gb|EIW86889.1| hypothetical protein CONPUDRAFT_115715 [Coniophora puteana RWD-64-598
            SS2]
          Length = 1457

 Score =  382 bits (981), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 359/1246 (28%), Positives = 591/1246 (47%), Gaps = 181/1246 (14%)

Query: 620  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
            ++ S I P ++V   +  I   G  V+ LG   G       VD         + VGQ V+
Sbjct: 325  TNVSSILPGTLVQSLITAISPEGINVQVLGFFDG------TVDDAHLPSGTKFKVGQKVK 378

Query: 680  SNILDV--NSETGRITLSLKQSCCS--STDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
              +L     S   ++ L+L     S  S DA   Q           LQSS        + 
Sbjct: 379  CRVLYAIPASSPPKLVLALSDHIISLVSQDAENEQ-----------LQSS--------YP 419

Query: 736  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSV 785
             G I+  V   KV       V V       + GFI   Q A   V S          G++
Sbjct: 420  IGTILDDVKVAKVEGERGLTVAV----QPGLAGFIHISQTADDRVPSLSASSGPWRCGTL 475

Query: 786  IQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 844
             +A ++     +R++ LS K +V   +F +A                 D+ V + +   V
Sbjct: 476  HRARVIGHHIFDRVLQLSSKPSVLEQKFVQAG----------------DIAVGEVMKGSV 519

Query: 845  EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLL 904
            + + E  L +S+      + + +       K P K+F  G SV   V+ +       R++
Sbjct: 520  KKLTETALFISISGNADGVIWPNHYADIALKHPSKRFKPGGSVKCRVLTVDPERK--RVV 577

Query: 905  LLLKAI---SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 961
            L  K     SE    SS    K     VG +V A + ++    L+L+F       + + E
Sbjct: 578  LTAKKTLVDSELPIISSFEDAK-----VGMVVHAVVFKVFEKGLQLEFFNNVKAFVPVRE 632

Query: 962  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1021
             ++    + +     F +G+ V  RII      D   S +        + +V +  S   
Sbjct: 633  ASEGTGTLTDA----FPVGKVVKVRII----NIDTDTSRI--------VASVRQAASSFK 676

Query: 1022 FEECDVS---IGQRVTGYV---YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR 1075
                DVS   +G  V+G +   +K++   +L  I       L  L S+   + + + +  
Sbjct: 677  ATAGDVSQVEVGNEVSGTIAELHKLNAVVSLKPIDVRALVSLKNLASSRN-TTVAQLKGT 735

Query: 1076 FHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1134
              IG  V   V+ S N EK  +    +P     S K   +S   M+T +  G +VGGR+ 
Sbjct: 736  VAIGDEVHELVIVSRNSEKGFVIAACKPKSKTASHKIGPLS---MET-VAPGQVVGGRV- 790

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ-FDPLSGYDEGQFVKCKV 1193
             +  G+ G +V++ P + G +H T        D    Y+ G  F P     +   +K  V
Sbjct: 791  -LRQGLRGAIVKLTPKISGFLHPT--------DSCDNYETGTPFPP-----KDSVLKATV 836

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            +E+ +       ++LS+R S        S D+S+ VD   + +   ED+     ++G+VK
Sbjct: 837  IEVDKE---NNQLDLSMRPS------RLSGDVSSVVD---REINSFEDIKRGDTLRGFVK 884

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +V   G F+ML R +DA+V +  L D YV+  +  F   +LV GR+LSV+P +K+VE+T 
Sbjct: 885  SVADHGLFVMLGRHVDARVQIKELFDEYVKDWKPRFKANQLVKGRILSVDPENKKVEMTF 944

Query: 1314 KTSD-SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
            ++ D +R A+      L++LH G  V G+IKR+E+YGLFI +E + + GLCH SELS++ 
Sbjct: 945  RSGDLNRNATNGL--TLNDLHEGQKVKGRIKRIEAYGLFIEVEGSKISGLCHKSELSDNK 1002

Query: 1373 ---VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1429
               VD     +R G+ V+  I  +D  KR+IS G+K SYF         S+E+  DE+  
Sbjct: 1003 DADVDVALRTFREGDTVQAMIKSIDVSKRKISFGLKPSYF---------SAEDVDDESGA 1053

Query: 1430 EVGSYNRSSLL------ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP 1483
              G+ +  +L       +   V  +D   E  DG     A  E  +     ++++D   P
Sbjct: 1054 SDGAADSPALGVVEQDDDEQMVDPEDAGPEDSDGNEEDGAGEEEDSESEGDQMDIDLAPP 1113

Query: 1484 DMDNGISQNQGHTDE-------------------AKTIDEKNNRHAKKKEKEEREQEIRA 1524
                 ISQN G   +                   A  +D++++           E++ + 
Sbjct: 1114 ----SISQNVGRNAQPVPSASLKLDGFNWFNGANANGVDDESSNSEDSDSDGGEERKKKR 1169

Query: 1525 AEERLLEKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1576
             +++++++D        AP +  +FERL+  SPNSS++WI+YM+F L +++VEKAR IA 
Sbjct: 1170 KKKQVIQQDLTAEMHTKAPESNADFERLLLGSPNSSYLWIQYMSFQLKLSEVEKAREIAR 1229

Query: 1577 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1636
            RA++TI  REE EKLN+ +A  NLEN YG   +E++   F+ A +  D K VHL L  ++
Sbjct: 1230 RAIETIGFREEQEKLNVCIALLNLENTYGT--DESLENAFKDAARRNDSKTVHLQLASIF 1287

Query: 1637 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHI 1695
            +++E+++ A+E   +  KKF  S KVW    +  LK+ + E  + ++ R+L SL + KH+
Sbjct: 1288 DQSEKHEKAEEQYKRTCKKFGQSSKVWSLFCEYYLKRGEVEQARKLLPRSLQSLEKRKHL 1347

Query: 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1755
            K IS+ A LE+K G  +RG++++EGI+  +PKR DLWS+Y+D E    ++  +R +FER 
Sbjct: 1348 KTISKFAQLEYKLGDPERGKTIYEGIVDSHPKRWDLWSVYMDMEAGQQNIQSLRNIFERV 1407

Query: 1756 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            ++  +  +K K+ FKK+L+YE+  G+EE  + VK KA+E+ ++ L 
Sbjct: 1408 LTHKMTSRKAKYFFKKWLDYERRFGDEEGADNVKSKAVEWTQAALG 1453



 Score =  166 bits (419), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 191/763 (25%), Positives = 332/763 (43%), Gaps = 87/763 (11%)

Query: 49  LPTIFHVGQLVSCIVL--------------QLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 94
           L  +F+ GQ V  +V               ++ DD  +  KR + LSL    +  G+   
Sbjct: 181 LHDLFYPGQFVRAVVTNVYAPGVSEVSGLGRVRDDIAKASKR-VELSLVPEDVNAGVQKS 239

Query: 95  TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVR 151
            +Q G  LTA VKS+EDHGY+L  G+P  +GF+   +  +    D K    GLL   V++
Sbjct: 240 DLQLGFTLTAAVKSVEDHGYLLDLGVPDVSGFMSFQDAQKGRFGDKKLPIGGLLDVAVLK 299

Query: 152 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 211
                R    +S D    +     ++  +S   ++PG +V + + +I   G+ +  L +F
Sbjct: 300 KSGNGR-TCTVSLDAQLFATSSLSEVTNVSS--ILPGTLVQSLITAISPEGINVQVLGFF 356

Query: 212 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL------- 262
            GTVD  HL +          +   +KV  R+L+  P S    + L L+ +++       
Sbjct: 357 DGTVDDAHLPSG-------TKFKVGQKVKCRVLYAIPASSPPKLVLALSDHIISLVSQDA 409

Query: 263 HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 322
            N    S   +G I D  KV +V+   GL + +         ++ IS  A++ V  L   
Sbjct: 410 ENEQLQSSYPIGTILDDVKVAKVEGERGLTVAVQP---GLAGFIHISQTADDRVPSLSAS 466

Query: 323 ---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 379
              ++ G+  R R++G    + +     K S  E       D+  G V+KG V  +    
Sbjct: 467 SGPWRCGTLHRARVIGHHIFDRVLQLSSKPSVLEQKFVQAGDIAVGEVMKGSVKKLTETA 526

Query: 380 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 437
             +   G    +    H ++  +  P K+FK G  +  RVL V  + KR+ +T KKTLV 
Sbjct: 527 LFISISGNADGVIWPNHYADIALKHPSKRFKPGGSVKCRVLTVDPERKRVVLTAKKTLVD 586

Query: 438 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 497
           S+L I+SS+ +A   ++ H  + K+ + G  + F+N V+ F P  E     G   +  + 
Sbjct: 587 SELPIISSFEDAKVGMVVHAVVFKVFEKGLQLEFFNNVKAFVPVREASEGTGTL-TDAFP 645

Query: 498 VGQVVKCRIM------SSIPAS-RRINLSFMMKPTRVSEDDLVKLGSLVSG-VVDVVTPN 549
           VG+VVK RI+      S I AS R+   SF      VS+   V++G+ VSG + ++   N
Sbjct: 646 VGKVVKVRIINIDTDTSRIVASVRQAASSFKATAGDVSQ---VEVGNEVSGTIAELHKLN 702

Query: 550 AVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVL--DNESSNLLL 605
           AVV   +     +  +  ++LA    + TV  +K  +  G E  +L+++  ++E   ++ 
Sbjct: 703 AVV--SLKPIDVRALVSLKNLASS-RNTTVAQLKGTVAIGDEVHELVIVSRNSEKGFVIA 759

Query: 606 SAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
           + K     ++ ++ P     + P  VV G V      G  V+   +++GF   + + D  
Sbjct: 760 ACKPKSKTASHKIGPLSMETVAPGQVVGGRVLRQGLRGAIVKLTPKISGFLHPTDSCDNY 819

Query: 665 RADLSKTYYVGQSV-RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 723
             +    +    SV ++ +++V+ E  ++ LS++ S  S   +S +              
Sbjct: 820 --ETGTPFPPKDSVLKATVIEVDKENNQLDLSMRPSRLSGDVSSVVDR------------ 865

Query: 724 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
                  E+   E    G  + G V    D G+ V    H D 
Sbjct: 866 -------EINSFEDIKRGDTLRGFVKSVADHGLFVMLGRHVDA 901



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 118/252 (46%), Gaps = 12/252 (4%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVKP-GLLLQ 147
            LS+ETV  G V+   V      G I+    P  +GFL   +  +N  +G    P   +L+
Sbjct: 775  LSMETVAPGQVVGGRVLRQGLRGAIVKL-TPKISGFLHPTDSCDNYETGTPFPPKDSVLK 833

Query: 148  GVVRSIDRTRKVVYLSSDPDTVSKCVTK--DLKGISIDLLVPGMMVSTRVQSILENGVML 205
              V  +D+    + LS  P  +S  V+   D +  S + +  G  +   V+S+ ++G+ +
Sbjct: 834  ATVIEVDKENNQLDLSMRPSRLSGDVSSVVDREINSFEDIKRGDTLRGFVKSVADHGLFV 893

Query: 206  SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 265
                +    V I  L + +   +WK  +  ++ V  RIL VDP ++ V +T     L NR
Sbjct: 894  MLGRHVDARVQIKELFDEY-VKDWKPRFKANQLVKGRILSVDPENKKVEMTFRSGDL-NR 951

Query: 266  APPSHVKVGDIYDQSKVV-RVDR--GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEK 321
               + + + D+++  KV  R+ R    GL +++  + +S   + + +SD  + +V    +
Sbjct: 952  NATNGLTLNDLHEGQKVKGRIKRIEAYGLFIEVEGSKISGLCHKSELSDNKDADVDVALR 1011

Query: 322  KYKEGSCVRVRI 333
             ++EG  V+  I
Sbjct: 1012 TFREGDTVQAMI 1023



 Score = 42.0 bits (97), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 16/140 (11%)

Query: 53   FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK----GLSLETVQEGMVLTAYVKS 108
            F   QLV   +L +D + K     K+ ++ R   L +    GL+L  + EG  +   +K 
Sbjct: 920  FKANQLVKGRILSVDPENK-----KVEMTFRSGDLNRNATNGLTLNDLHEGQKVKGRIKR 974

Query: 109  IEDHGYILHFGLPSFTGFLPRNNLAENSGIDV-------KPGLLLQGVVRSIDRTRKVVY 161
            IE +G  +       +G   ++ L++N   DV       + G  +Q +++SID +++ + 
Sbjct: 975  IEAYGLFIEVEGSKISGLCHKSELSDNKDADVDVALRTFREGDTVQAMIKSIDVSKRKIS 1034

Query: 162  LSSDPDTVSKCVTKDLKGIS 181
                P   S     D  G S
Sbjct: 1035 FGLKPSYFSAEDVDDESGAS 1054


>gi|240282264|gb|EER45767.1| U3 snoRNP-associated protein Rrp5 [Ajellomyces capsulatus H143]
          Length = 1781

 Score =  382 bits (981), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 378/1427 (26%), Positives = 667/1427 (46%), Gaps = 199/1427 (13%)

Query: 459  ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 514
            +TK+E   G +V+F +   GF   S L  D     SS    Y V    + RI   +  S 
Sbjct: 468  VTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARI---VGFSA 524

Query: 515  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 565
              NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 525  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 583

Query: 566  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 623
            P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 584  PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 640

Query: 624  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 641  DILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 700

Query: 684  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 743
            +V++E  ++ +S K    S+       EH              H G+             
Sbjct: 701  NVDAELRKLVVSCKDQLSSTEAYKRALEHI-------------HPGN------------T 735

Query: 744  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI----------QAAILDV 793
            + G V E ++  +++  E+   V      H   G    +G+ +          +  IL++
Sbjct: 736  VSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNM 795

Query: 794  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYL 852
             K+ RL+ ++ K           S +QA+++       +DL     V   V+ I+ +   
Sbjct: 796  QKSHRLIKVTNKP----------SLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLF 845

Query: 853  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 912
            V  L      +    V D +  K P   +   Q +  TV ++       R +L LK    
Sbjct: 846  VEFLGGLTGFVPKRLVDDDHVNK-PSFGYALAQPISLTVQSIEDDRQ--RFILTLKEPHT 902

Query: 913  TETSSSKRAKKKSSYD------------------VGSLVQAEITEIKPLELRLKFGIGFH 954
             +   S R K+  + +                   G + +A++  IK  ++ ++      
Sbjct: 903  GKQRVSDRDKESDNANQSSINPIDGDIKSLDDLTFGRITKAKVVSIKETQINVQLAENIQ 962

Query: 955  GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWE 1003
            GRI ++EV D    + +       FK  Q +  RII    A+S++  P   +S    ++E
Sbjct: 963  GRIDVSEVFDSWEAIKDRKQPLRFFKAKQILPVRIIGIHDARSHRFLPISHRSGKYPVFE 1022

Query: 1004 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1063
            LS KPS L  +++    L     V IG    G+V  + ++   ++IS +++ +L + D +
Sbjct: 1023 LSAKPSSLESTDLD---LLSLDKVKIGSAWIGFVNNIGDDCLWISISPNVRGRLRLTDVS 1079

Query: 1064 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1123
             + S L +    F +G A+  HV  ++ +K  L L  +    G S   + IS+       
Sbjct: 1080 DDLSLLSDITTNFPVGSAIKVHVTGVDTDKNRLDLSAK---HGGSPNKLTISD------F 1130

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
             +G+I+ GR++++      ++VQ+   + G ++  ++                 D  S  
Sbjct: 1131 SKGEILLGRVTRVTEH--QVLVQLSDTVVGAINLIDMA----------------DDYSKI 1172

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
            +   F K ++L +         +++  +  L  M S+     S  +  P   +  I  + 
Sbjct: 1173 NPADFHKNELLRVC-----VVDIDVPKKKILLSMRSSRVLSSSLPIQDP--EISSISQIK 1225

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
             N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +LV GRV+  +
Sbjct: 1226 VNDIVRGFVRRVADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVILAD 1285

Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGL 1362
            P S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I+ T NL GL
Sbjct: 1286 PESNKLQMSLKQSVLDPNYKTPIT-IKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGL 1344

Query: 1363 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-----DADNLQ 1417
            CH +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+     D +N+Q
Sbjct: 1345 CHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKDSDDESDGENVQ 1404

Query: 1418 MSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVN 1477
              SEE   E+  + G                D+++ES D  S+    +E   +    E +
Sbjct: 1405 DKSEENVSESQYDGG---------------MDLELESGDDISMGGVDLEDTMNGDNSESD 1449

Query: 1478 LDDEQPDM----DNGIS------------QNQGHTDEAKTIDEKNNRHAKKKEKEEREQE 1521
              D    M    D GI+             N   TDE    D  ++     K+K+ R+QE
Sbjct: 1450 SSDWDVQMTGTKDAGITGGLVTSGFDWNGNNTVGTDEDNESDSDSDNKTAVKKKKRRKQE 1509

Query: 1522 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1581
            I+      L+ + P++  ++ERL+   PNSS +W+KYMAF L +++V+KAR IAERAL++
Sbjct: 1510 IQVDRTGDLDTNGPQSVADYERLLLGEPNSSLLWLKYMAFQLELSEVDKAREIAERALRS 1569

Query: 1582 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1641
            I+I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ +
Sbjct: 1570 ISIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGK 1627

Query: 1642 NKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQEGVQA-VVQRALLSLPRHKHI---- 1695
            +  ADEL   ++ KKF  S  ++L     L   + E  +   + RA    P H H+    
Sbjct: 1628 HDKADELFQAILKKKFTQSPNIYLNFATFLFDTRAEPERGRALSRAHPITPTHTHVDITS 1687

Query: 1696 KFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFER 1754
            KF+S  ++L+ ++       ++FE +   + P+  DLW++ LD EI+ GD++        
Sbjct: 1688 KFVS-GSLLQRRHRTW---TTIFERLHHLFIPQTRDLWNVLLDLEIKNGDME-------- 1735

Query: 1755 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
                 L  K+ KF FKK+L +E+  G+E+ ++ VK +A +YV +  A
Sbjct: 1736 ---QRLKDKQAKFFFKKWLAFEEKTGDEKMVDEVKARAADYVRAIKA 1779



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 185/748 (24%), Positives = 322/748 (43%), Gaps = 52/748 (6%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL---------- 48
           K+ G V+ +N  D+ + LP  L G   L   +  L   ++  + ++++            
Sbjct: 153 KILGQVSSINAHDIGLSLPNNLTGYIPLTAVSKTLQQKIEKLLNSSQEEDDNSDGDDGGD 212

Query: 49  ----LPTIFHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 101
               L + F +GQ +   V   + +    K  GK+ I LS+       GLS   +     
Sbjct: 213 GDLDLKSYFKLGQYLRAAVTSTETEVNHGKIKGKKHIELSVDPREANSGLSKSDLVVNAT 272

Query: 102 LTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRK 158
           + A V S+EDHG ++  GL      GF+    +  +   + +K G +   VV   +    
Sbjct: 273 VQASVLSVEDHGLVMDLGLEDGQTRGFMSSKEIPHDLELLQIKEGTVFLCVVTGHNANGS 332

Query: 159 VVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
           VV LS++  T              +I+  +PG      +  +   G+    +      VD
Sbjct: 333 VVKLSANLPTAGSIKKSHFLASAPTINSFLPGTAAEILLTQVTSTGMAGKIMGMLDAVVD 392

Query: 217 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN---------PYLLHNRAP 267
           I     T    +    Y+   K+  R++   PT+  + L  +         P +L +++ 
Sbjct: 393 IVQSGATAGKEDITARYHVGAKIKGRLICTFPTAEPLKLGFSILDHVVKFTPTVLDHKSS 452

Query: 268 PSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 326
              V  +  I  + KV +V+ GLG+ +              +SD   + +   +  Y   
Sbjct: 453 CEGVPAISAIVPEVKVTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVD 512

Query: 327 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAI 381
           S    RI+GF  L+ L    L+    +       DV  G VVKGK+    I  D   G I
Sbjct: 513 STHEARIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLI 572

Query: 382 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 439
           V    G+  L P  HMS+ ++  P KKF+ G ++  R+L V  + +++ +T KKTL+ S+
Sbjct: 573 VSLADGISGLVPGMHMSDTKLQHPEKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSE 632

Query: 440 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 499
            +    Y++      + G I  I+ HG  V+FY  V+GF P SE+      +P+  +++G
Sbjct: 633 SSTWCDYSDILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIG 692

Query: 500 QVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYV 555
           QVV    ++     R++ +S    +  T   +  L  +  G+ VSG V   +   +++ +
Sbjct: 693 QVVNVHALNVDAELRKLVVSCKDQLSSTEAYKRALEHIHPGNTVSGTVFEKSNEDILLKL 752

Query: 556 IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLI 612
              G     +  EH++D          + I+ G + ++LL+L+ + S+ L+  + K SL 
Sbjct: 753 EDSGLV-ARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNMQKSHRLIKVTNKPSLK 811

Query: 613 NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 670
            + Q  +LP+    +   S V G+V NII  G FV FLG LTGF P+    D      S 
Sbjct: 812 QARQRGELPAKFEDLEEGSKVTGFVKNIIADGLFVEFLGGLTGFVPKRLVDDDHVNKPSF 871

Query: 671 TYYVGQSVRSNILDVNSETGRITLSLKQ 698
            Y + Q +   +  +  +  R  L+LK+
Sbjct: 872 GYALAQPISLTVQSIEDDRQRFILTLKE 899



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 22/248 (8%)

Query: 180  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 239
            ++I     G ++  RV  + E+ V++       G +++  + + +   N   D+++++ +
Sbjct: 1125 LTISDFSKGEILLGRVTRVTEHQVLVQLSDTVVGAINLIDMADDYSKIN-PADFHKNELL 1183

Query: 240  NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGL 289
               ++ +D   + + L++    + + + P         S +KV DI  +  V RV D GL
Sbjct: 1184 RVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSISQIKVNDIV-RGFVRRVADNGL 1242

Query: 290  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 349
             + L    T     AYV ISD+++  +++ + +++    VR R++            LK 
Sbjct: 1243 FVTLGHDVT-----AYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLKQ 1297

Query: 350  SAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVK 404
            S  +       T  D+K G  V GKV  V+ FGA +   G   +  LC    M+E ++  
Sbjct: 1298 SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVED 1357

Query: 405  PGKKFKVG 412
              K F+ G
Sbjct: 1358 ARKLFEKG 1365


>gi|449550992|gb|EMD41956.1| hypothetical protein CERSUDRAFT_147388 [Ceriporiopsis subvermispora
            B]
          Length = 1482

 Score =  382 bits (981), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 296/958 (30%), Positives = 485/958 (50%), Gaps = 90/958 (9%)

Query: 875  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 934
            K PQK+F  G S+   ++ +       R  + L A      S+    +K     VG +  
Sbjct: 573  KHPQKRFKPGASIKCRILVV----DPARKRIALTAKKTLLDSTLPIIRKFEDAQVGLVTH 628

Query: 935  AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 994
            A + +     L+++F  G    + + E ++   + V +L   F +G+ VT RII      
Sbjct: 629  AVVFKTTDKILQVEFYNGLKAVVPLREASE---SAVTSLPEAFPVGKPVTVRIITV---- 681

Query: 995  DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1054
            D + S      I  S+   S      + +   V IG  V G +  V  +  +LT+     
Sbjct: 682  DTETS-----RITASIRQASPTYKSAVTDISGVEIGNTVEGTISDVRKDQIVLTLQPTQV 736

Query: 1055 AQLFILDSAYEPSELQ--EFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKT 1111
              L  L++      +   + + R  IG  +   V+ S N EK  + +   P      DK 
Sbjct: 737  TALLSLNNLANRRNVSVAQLRTRLKIGDKLQELVVVSRNPEKGFVLVASSP-----KDKV 791

Query: 1112 VDISNDNMQ-TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
              +  +++    I  G +VGGR+ + +    G +V++   + G +H T        D   
Sbjct: 792  ALVPKNSLSLDTIQVGQLVGGRVLRHVRQ--GALVKLTQSISGVLHPT--------DTCD 841

Query: 1171 GYDEGQ-FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1229
             Y+ G  F P+        +K  V+ + +  R    + LS RSS    +  N   L+   
Sbjct: 842  DYESGTPFPPVDS-----IIKAVVIAVDKEKR---QLTLSTRSSR--FNPDNRKALAD-- 889

Query: 1230 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1289
                + L  ++ LSP   V+G++K+V   G F+ML R +DA+V +  L D +V+  +  F
Sbjct: 890  ----RELVGLDALSPGDSVRGFIKSVAEHGLFVMLGRNIDARVQIKELFDEFVKDWKSRF 945

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1349
             + +LV GR++SV+   K+VE++ ++ D  T S S    L++L  G  + G++KRVE YG
Sbjct: 946  TVNQLVKGRIVSVDREKKQVEMSFRSGDI-TKSASTKLTLADLSEGQKINGRVKRVEEYG 1004

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKS 1406
            LFI IE + L GLCH SELS++   ++      +R G+ VK KIL +D EKRRISLG+K 
Sbjct: 1005 LFIEIEGSKLSGLCHKSELSDNKDADVTLALRSFREGDAVKAKILSIDVEKRRISLGLKP 1064

Query: 1407 SYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE--DGGSLVLAQ 1464
            SYF  +  +L+ S E+ + +  EE  ++    ++E +     ++D  SE  D    + ++
Sbjct: 1065 SYFTEE--DLEASDEDGTSDDDEESHAFG---VIETAEATASEVDSGSEHSDAEEDIASE 1119

Query: 1465 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEK--------NNRH-----AK 1511
             E+   V  ++V+++ +    D     N   T  A  +  K          +H     A 
Sbjct: 1120 DEADGEVVNMDVDINLQSTGTDRPSVSNVTSTSNAAFLSLKEGFQWSVHGTQHEDVEMAS 1179

Query: 1512 KKEKEEREQEIRAA--------EERL---LEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1560
              E +E +++            E+ L   L    P +  +FER++  SPNSS++WI+YM+
Sbjct: 1180 SSEDDEDQEKTSGKKKRKRKEIEQDLTADLHTKTPESNADFERVLLGSPNSSYLWIQYMS 1239

Query: 1561 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1620
            F L +++V+KAR IA RAL TIN REE EKLN+W+A  NLEN YG   +E++   F+ A 
Sbjct: 1240 FQLQLSEVDKAREIARRALGTINFREEQEKLNVWIALLNLENTYGT--DESLEATFKDAA 1297

Query: 1621 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQ 1679
            ++ D K VHL +  + E++++ + A+E   K  KKF  S KVW    +  L++ + E  +
Sbjct: 1298 RHNDSKTVHLRMAVILEQSDKIEKAEEQYKKTCKKFSQSSKVWTLFGEHYLRRGKLEEAR 1357

Query: 1680 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1739
             ++ R+L SL + KH+K IS+ A  E+K G  +RG+++FEGI+  +PKR DLWSIY+D E
Sbjct: 1358 QLLPRSLQSLEKRKHLKTISKFAQFEYKLGDPERGKTLFEGIVDSHPKRWDLWSIYMDME 1417

Query: 1740 IRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
               G +  +R LF R ++L +   K K  FKK+L+ E+ +G+EE    VK KA+E+ +
Sbjct: 1418 ATQGAIGNLRNLFNRVLALKMTSHKAKSFFKKWLDLERRLGDEEGAAAVKAKAIEWTQ 1475



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 170/696 (24%), Positives = 303/696 (43%), Gaps = 63/696 (9%)

Query: 52  IFHVGQLVSCIVLQL---------------DDDKKEIGKRKIWLSLRLSLLYKGLSLETV 96
           +F  GQ V  +V  +               DD +K    R++ LS+    +  G++   V
Sbjct: 197 LFKPGQYVRAVVTTVHAPGSTDVSGLGRARDDVQK--ASRRVELSIVPEKVNGGVAKADV 254

Query: 97  QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP---GLLLQGVVRSI 153
           + G  + A +KS+EDHGYIL+ G+P  +GFL   + A+    + K    G LL   V  +
Sbjct: 255 RPGFTMAAAIKSVEDHGYILNLGVPEISGFLSFKDAAKCYPQNSKKLHVGQLLDVSVTKV 314

Query: 154 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 213
               +   ++ DP  +      ++  ++   ++PG +V + + ++  +G+ L  L +F G
Sbjct: 315 AGNGRTCNVTVDPQEIHSSSISEISNVTS--VLPGALVQSLITAVHPDGLNLQVLGFFGG 372

Query: 214 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILF----VDPTSRAVG-----LTLNPYLLHN 264
           TVD FHL    P  N    Y    KV AR+L+      P   A+      L+L+P     
Sbjct: 373 TVDQFHLLPGEPEVN----YKVGTKVKARVLYDLHQSSPPRFALSLAEHVLSLSPKHTDG 428

Query: 265 RAPPSHVKVGDIY------DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 318
               S   + D Y      D  +V+RV+   GL+  +  +P     +V IS V+++ +  
Sbjct: 429 SKESSGSTLFDAYPVGCTLDAVEVIRVESERGLITRV--SP-EVEGFVHISHVSDDHIPS 485

Query: 319 LEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 375
           L      +K G+  + R+ G   L+G+    L+ S          +V+ G ++KG V  +
Sbjct: 486 LSSSSGTWKIGTTHKARVTGHFPLDGMLQLSLRPSILSQKFLQVGEVQVGEIIKGTVKKL 545

Query: 376 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKK 433
                 V   G V  +    H ++  +  P K+FK GA +  R+L V    KRI +T KK
Sbjct: 546 TDSALFVSISGNVDGVVWPNHYADIILKHPQKRFKPGASIKCRILVVDPARKRIALTAKK 605

Query: 434 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 493
           TL+ S L I+  + +A   L+TH  + K       V FYNG++   P  E          
Sbjct: 606 TLLDSTLPIIRKFEDAQVGLVTHAVVFKTTDKILQVEFYNGLKAVVPLREASESAVTSLP 665

Query: 494 SMYHVGQVVKCRIMSSIPASRRINLSF-MMKPT---RVSEDDLVKLGSLVSGVVDVVTPN 549
             + VG+ V  RI++    + RI  S     PT    V++   V++G+ V G +  V  +
Sbjct: 666 EAFPVGKPVTVRIITVDTETSRITASIRQASPTYKSAVTDISGVEIGNTVEGTISDVRKD 725

Query: 550 AVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLLVLDNESSNLLLSAK 608
            +V+ +     +   +   +LA+    +   +++ +K G +  +L+V+        +   
Sbjct: 726 QIVLTLQPTQVT-ALLSLNNLANRRNVSVAQLRTRLKIGDKLQELVVVSRNPEKGFVLVA 784

Query: 609 YSLINSAQQLPSDA---SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 665
            S  +    +P ++     I    +V G V   +  G  V+    ++G    +   D   
Sbjct: 785 SSPKDKVALVPKNSLSLDTIQVGQLVGGRVLRHVRQGALVKLTQSISGVLHPTDTCDDYE 844

Query: 666 ADLSKTYY--VGQSVRSNILDVNSETGRITLSLKQS 699
              S T +  V   +++ ++ V+ E  ++TLS + S
Sbjct: 845 ---SGTPFPPVDSIIKAVVIAVDKEKRQLTLSTRSS 877



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            I++G VK +T    F+ +S  +D  V  ++ +D  ++ P+K F  G  +  R+L V+P  
Sbjct: 537  IIKGTVKKLTDSALFVSISGNVDGVVWPNHYADIILKHPQKRFKPGASIKCRILVVDPAR 596

Query: 1307 KRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
            KR+ +T K +  DS   +   I    +  VG +    + +     L +   N  L  +  
Sbjct: 597  KRIALTAKKTLLDS---TLPIIRKFEDAQVGLVTHAVVFKTTDKILQVEFYN-GLKAVVP 652

Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + E SE  V ++   +  G+ V V+I+ VD E  RI+  ++ +
Sbjct: 653  LREASESAVTSLPEAFPVGKPVTVRIITVDTETSRITASIRQA 695



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 123/256 (48%), Gaps = 17/256 (6%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVKP-GLLLQ 147
            LSL+T+Q G ++   V      G ++     S +G L   +  ++  SG    P   +++
Sbjct: 799  LSLDTIQVGQLVGGRVLRHVRQGALVKL-TQSISGVLHPTDTCDDYESGTPFPPVDSIIK 857

Query: 148  GVVRSIDRTRKVVYLSS-----DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
             VV ++D+ ++ + LS+     +PD       ++L G+  D L PG  V   ++S+ E+G
Sbjct: 858  AVVIAVDKEKRQLTLSTRSSRFNPDNRKALADRELVGL--DALSPGDSVRGFIKSVAEHG 915

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            + +         V I  L + F   +WK+ +  ++ V  RI+ VD   + V ++     +
Sbjct: 916  LFVMLGRNIDARVQIKELFDEF-VKDWKSRFTVNQLVKGRIVSVDREKKQVEMSFRSGDI 974

Query: 263  HNRAPPSHVKVGDIYDQSKVV-RVDR--GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRK 318
              ++  + + + D+ +  K+  RV R    GL ++I  + +S   + + +SD  + +V  
Sbjct: 975  -TKSASTKLTLADLSEGQKINGRVKRVEEYGLFIEIEGSKLSGLCHKSELSDNKDADVTL 1033

Query: 319  LEKKYKEGSCVRVRIL 334
              + ++EG  V+ +IL
Sbjct: 1034 ALRSFREGDAVKAKIL 1049



 Score = 44.7 bits (104), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 34/251 (13%)

Query: 877  PQKQFLNGQSVIATVMALPSSSTAGRLLLLLK----AISETETSSSKRAKKKS---SYDV 929
            P+  +  G  V A V+     S+  R  L L     ++S   T  SK +   +   +Y V
Sbjct: 384  PEVNYKVGTKVKARVLYDLHQSSPPRFALSLAEHVLSLSPKHTDGSKESSGSTLFDAYPV 443

Query: 930  GSLVQA-EITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
            G  + A E+  ++    L  +      G +HI+ V+DD    + +    +KIG T  AR+
Sbjct: 444  GCTLDAVEVIRVESERGLITRVSPEVEGFVHISHVSDDHIPSLSSSSGTWKIGTTHKARV 503

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1047
                         + +LS++PS+L      S+   +  +V +G+ + G V K+ +    +
Sbjct: 504  TGH-----FPLDGMLQLSLRPSIL------SQKFLQVGEVQVGEIIKGTVKKLTDSALFV 552

Query: 1048 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL--------- 1098
            +IS ++     +  + Y    L+  Q+RF  G ++   +L ++  +K + L         
Sbjct: 553  SISGNVDG--VVWPNHYADIILKHPQKRFKPGASIKCRILVVDPARKRIALTAKKTLLDS 610

Query: 1099 ---VLRPFQDG 1106
               ++R F+D 
Sbjct: 611  TLPIIRKFEDA 621


>gi|254586193|ref|XP_002498664.1| ZYRO0G15730p [Zygosaccharomyces rouxii]
 gi|238941558|emb|CAR29731.1| ZYRO0G15730p [Zygosaccharomyces rouxii]
          Length = 1717

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 367/1251 (29%), Positives = 585/1251 (46%), Gaps = 163/1251 (13%)

Query: 593  LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
            L+ LD E++ ++ S      +SA  L S       N V    V      GCF+ F G+L 
Sbjct: 578  LVGLDEENTKVISS-----YDSANALKS------ANEVTIATVQQFHTKGCFLTFFGKLK 626

Query: 653  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 712
            GF P ++  +           +GQ+V   +++V+ E  RI      +C  S D +  Q+ 
Sbjct: 627  GFLPNAEISEVFVRRPQDHLRLGQTVSVKLIEVDEERSRII----ATCKISNDLAAQQK- 681

Query: 713  FLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFIT 771
                                + +E  I G ++++  V E     +VV  ++ S + G I 
Sbjct: 682  --------------------ESIEEMIPGRTLVDVTVAEKTKDSLVVELKDLS-LRGVIY 720

Query: 772  HHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 821
               L+ A +E           GS ++  ++D      + ++SLK   I   +E       
Sbjct: 721  VGHLSDARIEQNRASLKKIKIGSELKGLVIDKDVRTHVFNMSLKESLIKDAKEDLLPINY 780

Query: 822  QKKKRKREASKDLGVHQTVNAIVEIVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQK 879
            Q  K K   +   G  ++++     V  N  ++ L LP Y        +S         K
Sbjct: 781  QDVKSKVPTTPMHGYIKSISEKGLFVAFNGKFVGLVLPSYAVESRDVDIS---------K 831

Query: 880  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA----------KKKSSYDV 929
             F   QSV A +  L +     R LL LK            A          K    + +
Sbjct: 832  TFYVNQSVTAYL--LRTDDEHERFLLSLKEPKNASNGKKSDAEIVNPVDENIKTSEDFTL 889

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARI 987
            G +V+ ++  +K  +L +       GR+ + EV D  +  N  +   +NFK G  +  RI
Sbjct: 890  GRIVKGKVKAVKKNQLNIILADNIFGRVDVAEVFDHIEDINDPKQPLANFKKGDVIDVRI 949

Query: 988  IA----KSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1038
            I     KS+K       + K  + EL++KPS L  +E  +K +    DV + + V G++ 
Sbjct: 950  IGNHDVKSHKFLPITHQVGKGTVLELTVKPSKLKGNEFKAKDI---EDVKVDEEVLGFIN 1006

Query: 1039 KVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLR 1097
               N    LT+S  LKA++  LD   + +EL +  +  F +G A    V  I+KE   + 
Sbjct: 1007 NHLNNSLWLTVSPRLKAKVSALDLVDDGAELSDNLEDSFPLGTAFKIRVTGIDKEHATIT 1066

Query: 1098 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1157
               R             S +N++     G  V  RI K+      +++ +G  + G    
Sbjct: 1067 ATGRSH-----------SINNIKD-AQPGTKVPARILKVNEKY--VLLDLGSGVKGISFA 1112

Query: 1158 TE-LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1216
            T+ L +  +  P +  D+          + Q V   VL +         ++LSLRS    
Sbjct: 1113 TDALDDFSIPLPEAFKDK----------QNQIVSATVLLVDEE---NSRIKLSLRSPAAK 1159

Query: 1217 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1276
              + +S                 EDL    IVQ  VK  T KG F+ LS  L+A V +S 
Sbjct: 1160 THAISSH----------------EDLKKGAIVQALVKGTTDKGVFVYLSSNLEAFVPVSK 1203

Query: 1277 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1336
            LSD Y++  +K +   + V G+V++ +  S R+ +TL+ S+        +    ++ VGD
Sbjct: 1204 LSDSYIKEWKKFYQPMQHVVGKVVNCDDDS-RILLTLRESEV-NGDLKILKGYDDIKVGD 1261

Query: 1337 IVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1395
            I  G +K V  +G+F+ +++T NL GL H +E++++   ++ +++  G++VK  I KV+ 
Sbjct: 1262 IFNGHVKNVTDFGVFVKLDDTVNLTGLAHRTEIADEAPQDLNSLFGVGDRVKAYITKVNA 1321

Query: 1396 EKRRISLGMKSSYFKNDAD-NLQMSSEEESDEAIEEVG---SYNRSSLLENSSVAVQDMD 1451
            EKR+ISL +K+S F  + D N  +S   E+ E+ +EV     YN S          ++  
Sbjct: 1322 EKRKISLSLKASRFSKEEDVNNAVSEANEASESEDEVMEGVDYNHSESEAEPEEEDEEPK 1381

Query: 1452 ME--SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRH 1509
                S DG SL  A  +  AS+      LD  QPD      +++  T   K+  ++N   
Sbjct: 1382 KPKVSSDGLSLS-ADFDWTASI------LDQTQPDE-ESEDEDEDFTKSNKSKRQRN--- 1430

Query: 1510 AKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVE 1569
             K K  E++  EI           AP +  +FERL+   PNSS VW+ YMAF L +++V+
Sbjct: 1431 -KNKIVEDKTIEINTR--------APESVGDFERLILGDPNSSVVWMNYMAFQLQLSEVD 1481

Query: 1570 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVH 1629
            KAR IAERAL+TIN REE EKLNIWVA  NLEN +G   +E +  +F+RA QY D   +H
Sbjct: 1482 KAREIAERALKTINFREELEKLNIWVALLNLENTFGT--DETLNDIFKRACQYMDSFTIH 1539

Query: 1630 LALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALL 1687
              LL +Y+ +E+   A +L     KKF      +W+   + L+ Q Q E  +A++ RAL 
Sbjct: 1540 NKLLSIYQMSEKFDEAADLFKATAKKFGSEKVSIWVSWGEFLISQNQPEEARAILTRALQ 1599

Query: 1688 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1747
             L +  HI  + + A LEF  G  +RGRS+FEG++++ PKR DLW++YLDQE++ GD   
Sbjct: 1600 ILAKRNHIDVVRKFAQLEFNKGEPERGRSLFEGLIADVPKRIDLWNVYLDQEMKTGDKKK 1659

Query: 1748 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            +  LFER +   L  K+ KF F K+L++E++  + +  EYVK KA+EY E+
Sbjct: 1660 VEDLFERIVVKKLTRKQAKFFFNKWLQFEETQNDSKAEEYVKAKAIEYAEN 1710



 Score =  180 bits (456), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 207/761 (27%), Positives = 343/761 (45%), Gaps = 88/761 (11%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLARAA----------DALDPILD-------------- 38
           L G V+ +N+ DL +    G+ G               + LD  +D              
Sbjct: 122 LLGQVSSINKNDLTVSFTDGISGFVTMTHISEQFTSILEQLDDKMDASDHEEDSDHDHSD 181

Query: 39  --NEIEANEDNLLPTI---FHVGQLVSCIVL---QLDDDKKEIGKRKIWLSLRLSLLYKG 90
             +E EA +   LP +   F +GQ + C V     +D  +K+  K++I LSL  S +   
Sbjct: 182 DEDEAEARKSKELPDLNQYFQLGQWLRCRVTINSAMDSGRKKKDKKRIELSLEPSEV-NS 240

Query: 91  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGV 149
            S E + +   +   VKS+EDHG IL  G+   TGF+ + ++ +  G    PG + L  V
Sbjct: 241 FSEEDLDKYSAVQCSVKSMEDHGAILDLGIEGLTGFVSKKDIPQ--GWQCLPGSVFLANV 298

Query: 150 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 209
           V+   RT  V +     D  SK   K  +  SID++VPG +V    Q I E GV+     
Sbjct: 299 VKKSSRTVNVNF-----DFRSKS-NKITQISSIDVVVPGQVVDFMCQKITEQGVLGKVFG 352

Query: 210 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT---SRAVGLTLNPYLLHNRA 266
              G + I +    F     ++ +     +  RI+   P+    + + L++ P +L   +
Sbjct: 353 MLPGFLGI-NQSRIFKQEALRHTFAIGSNIKCRIIAQLPSKSDEKTLILSILPNILSLES 411

Query: 267 PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD-----VAEEEVRKLEK 321
             S  +  D +    + +    LG          S   Y+ + D     V   +  +L +
Sbjct: 412 KWSKDEALDAFPVGHICQNCEVLG--------RDSEYIYLALDDERFGQVHLSKAGELVE 463

Query: 322 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGA 380
             K  S  RV  LG+  ++ L          E       D+  G +V G +++ V S G 
Sbjct: 464 SSKNRSDARV--LGYNGVDKLYQLGTDPKLLELRYLRAEDIPAGELVTGCEIVTVSSKGI 521

Query: 381 IVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV-- 436
            ++  G   KA  PL H+S+  +V P +KFK+G+++  RVL V ++ RI  T KK+LV  
Sbjct: 522 ELRLFGSQFKAFVPLLHISDIRLVYPERKFKIGSKVKCRVLSVDARGRIFATLKKSLVGL 581

Query: 437 -KSKLAILSSYAEA----TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 491
            +    ++SSY  A    +   +T   + +    GCF+ F+  ++GF P +E+       
Sbjct: 582 DEENTKVISSYDSANALKSANEVTIATVQQFHTKGCFLTFFGKLKGFLPNAEISEVFVRR 641

Query: 492 PSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV 545
           P     +GQ V  +++      S I A+ +I+     +  + S ++++   +LV   V  
Sbjct: 642 PQDHLRLGQTVSVKLIEVDEERSRIIATCKISNDLAAQ-QKESIEEMIPGRTLVDVTVAE 700

Query: 546 VTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNL 603
            T +++VV +  K  S +G I   HL+D  +E        IK G E   L++  +  +++
Sbjct: 701 KTKDSLVVEL--KDLSLRGVIYVGHLSDARIEQNRASLKKIKIGSELKGLVIDKDVRTHV 758

Query: 604 L-LSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
             +S K SLI  A++  LP    D     P + +HGY+ +I E G FV F G+  G    
Sbjct: 759 FNMSLKESLIKDAKEDLLPINYQDVKSKVPTTPMHGYIKSISEKGLFVAFNGKFVGLVLP 818

Query: 658 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
           S AV+ +  D+SKT+YV QSV + +L  + E  R  LSLK+
Sbjct: 819 SYAVESRDVDISKTFYVNQSVTAYLLRTDDEHERFLLSLKE 859



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 130/299 (43%), Gaps = 18/299 (6%)

Query: 409  FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 468
            F +G     RV G+  +  T+T        +   +++  +A         I K+ +    
Sbjct: 1045 FPLGTAFKIRVTGIDKEHATIT-----ATGRSHSINNIKDAQPGTKVPARILKVNEKYVL 1099

Query: 469  VRFYNGVQGFAPRSELGLDPGCEP---SSMYHVGQVVKCRIMSSIPASRRINLSF---MM 522
            +   +GV+G +  ++  LD    P   +      Q+V   ++     + RI LS      
Sbjct: 1100 LDLGSGVKGISFATD-ALDDFSIPLPEAFKDKQNQIVSATVLLVDEENSRIKLSLRSPAA 1158

Query: 523  KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 582
            K   +S  + +K G++V  +V   T   V VY+ +    +  +P   L+D   +    K 
Sbjct: 1159 KTHAISSHEDLKKGAIVQALVKGTTDKGVFVYLSSN--LEAFVPVSKLSD--SYIKEWKK 1214

Query: 583  VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
              +P       +V  ++ S +LL+ + S +N   ++      I    + +G+V N+ + G
Sbjct: 1215 FYQPMQHVVGKVVNCDDDSRILLTLRESEVNGDLKILKGYDDIKVGDIFNGHVKNVTDFG 1274

Query: 643  CFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
             FV+      LTG A R++  D    DL+  + VG  V++ I  VN+E  +I+LSLK S
Sbjct: 1275 VFVKLDDTVNLTGLAHRTEIADEAPQDLNSLFGVGDRVKAYITKVNAEKRKISLSLKAS 1333



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 5/181 (2%)

Query: 356  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
            + +H D+K G +V+  V      G  V     ++A  P+  +S+  I +  K ++    +
Sbjct: 1163 ISSHEDLKKGAIVQALVKGTTDKGVFVYLSSNLEAFVPVSKLSDSYIKEWKKFYQPMQHV 1222

Query: 416  VFRVLGVKS-KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
            V +V+      RI +T +++ V   L IL  Y +     I +G +  +   G FV+  + 
Sbjct: 1223 VGKVVNCDDDSRILLTLRESEVNGDLKILKGYDDIKVGDIFNGHVKNVTDFGVFVKLDDT 1282

Query: 475  VQ--GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 532
            V   G A R+E+  +   + +S++ VG  VK  I       R+I+LS  +K +R S+++ 
Sbjct: 1283 VNLTGLAHRTEIADEAPQDLNSLFGVGDRVKAYITKVNAEKRKISLS--LKASRFSKEED 1340

Query: 533  V 533
            V
Sbjct: 1341 V 1341



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 13/194 (6%)

Query: 1238 KIEDLSPNMIVQGY-VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1295
            + ED+    +V G  +  V+SKG  + +   +  A V L ++SD  +  PE++F IG  V
Sbjct: 498  RAEDIPAGELVTGCEIVTVSSKGIELRLFGSQFKAFVPLLHISDIRLVYPERKFKIGSKV 557

Query: 1296 AGRVLSVEPLSKRVEVTLKTS-----DSRTASQSEINNLSNLH-VGDIVIGQIKRVESYG 1349
              RVLSV+    R+  TLK S     +  T   S  ++ + L    ++ I  +++  + G
Sbjct: 558  KCRVLSVDARG-RIFATLKKSLVGLDEENTKVISSYDSANALKSANEVTIATVQQFHTKG 616

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
             F+T     L G    +E+SE  V   +   R G+ V VK+++VD+E+ RI    K S  
Sbjct: 617  CFLTFFG-KLKGFLPNAEISEVFVRRPQDHLRLGQTVSVKLIEVDEERSRIIATCKIS-- 673

Query: 1410 KNDADNLQMSSEEE 1423
             ND    Q  S EE
Sbjct: 674  -NDLAAQQKESIEE 686



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 103/462 (22%), Positives = 200/462 (43%), Gaps = 71/462 (15%)

Query: 971  ENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1030
            E L   F IG  +  RIIA+      +K+ +  LSI P++L++    SK      D ++ 
Sbjct: 369  EALRHTFAIGSNIKCRIIAQLPSKSDEKTLI--LSILPNILSLESKWSK------DEALD 420

Query: 1031 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF---HIGKAVTGHVL 1087
                G++ +                ++   DS Y    L +   RF   H+ KA  G ++
Sbjct: 421  AFPVGHICQ--------------NCEVLGRDSEYIYLALDD--ERFGQVHLSKA--GELV 462

Query: 1088 SINKEKKLLRL-----VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1142
              +K +   R+     V + +Q G   K +++       ++   DI  G   ++++G   
Sbjct: 463  ESSKNRSDARVLGYNGVDKLYQLGTDPKLLELR------YLRAEDIPAG---ELVTGCEI 513

Query: 1143 LVVQ---IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1199
            + V    I   L+G      +  + +SD    Y E +F        G  VKC+VL +   
Sbjct: 514  VTVSSKGIELRLFGSQFKAFVPLLHISDIRLVYPERKFKI------GSKVKCRVLSVD-- 565

Query: 1200 VRGTFHVELSLRSSLDGMSSTNSSDLST-DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
             RG   +  +L+ SL G+   N+  +S+ D     K        S N +    V+   +K
Sbjct: 566  ARG--RIFATLKKSLVGLDEENTKVISSYDSANALK--------SANEVTIATVQQFHTK 615

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            GCF+    KL   +  + +S+ +V  P+    +G+ V+ +++ V+    R+  T K S+ 
Sbjct: 616  GCFLTFFGKLKGFLPNAEISEVFVRRPQDHLRLGQTVSVKLIEVDEERSRIIATCKISND 675

Query: 1319 RTASQSEINNLSNLHVGDIVIG-QIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-NI 1376
              A Q E  ++  +  G  ++   +       L + +++ +L G+ +V  LS+  ++ N 
Sbjct: 676  LAAQQKE--SIEEMIPGRTLVDVTVAEKTKDSLVVELKDLSLRGVIYVGHLSDARIEQNR 733

Query: 1377 ETIYRAGEKVKVKILKVDKEKRR--ISLGMKSSYFKNDADNL 1416
             ++ +     ++K L +DK+ R    ++ +K S  K+  ++L
Sbjct: 734  ASLKKIKIGSELKGLVIDKDVRTHVFNMSLKESLIKDAKEDL 775



 Score = 41.2 bits (95), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 19/133 (14%)

Query: 7    VAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIF--HVGQLVSCIVL 64
            + +VNEK +++ L  G++G++ A DALD   D  I       LP  F     Q+VS  VL
Sbjct: 1090 ILKVNEKYVLLDLGSGVKGISFATDALD---DFSIP------LPEAFKDKQNQIVSATVL 1140

Query: 65   QLDDDKKEIGKRKIWLSLR--LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 122
             +D++       +I LSLR   +  +   S E +++G ++ A VK   D G  ++    +
Sbjct: 1141 LVDEENS-----RIKLSLRSPAAKTHAISSHEDLKKGAIVQALVKGTTDKGVFVYLS-SN 1194

Query: 123  FTGFLPRNNLAEN 135
               F+P + L+++
Sbjct: 1195 LEAFVPVSKLSDS 1207


>gi|448510670|ref|XP_003866400.1| hypothetical protein CORT_0A05730 [Candida orthopsilosis Co 90-125]
 gi|380350738|emb|CCG20960.1| hypothetical protein CORT_0A05730 [Candida orthopsilosis Co 90-125]
          Length = 1705

 Score =  378 bits (971), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 346/1296 (26%), Positives = 602/1296 (46%), Gaps = 171/1296 (13%)

Query: 562  KGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQ 616
            +G IP+ H++D    + E    + S +K         +L ++    L++ + SL+N    
Sbjct: 516  QGFIPSNHMSDIKLVYPERKFRIGSKVKG-------RLLSHKGKTPLVTVRKSLVNLEDD 568

Query: 617  QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
             + S+          +  V   +  G  V F G L  F P+++  +    D SK   +GQ
Sbjct: 569  DILSNFEDAKIGMKTNATVEKFVHGGVIVSFFGSLRAFLPKTEISETFVDDASKYLKLGQ 628

Query: 677  SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
             V   ILD+N +  R+ ++LKQS   ST                         S+   + 
Sbjct: 629  VVNVKILDINEDQKRLVVTLKQSSQLST-------------------------SQKTEIA 663

Query: 737  GFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 795
              I G SV++  V E  +  V++  E  S++ G +   QL+    E    +       +K
Sbjct: 664  NLIPGISVVQAVVVEKKNDSVLIELE-GSNLRGVVHDGQLSDGNYEQNRALFKKTEINSK 722

Query: 796  AERLV---DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYL 852
             E L+   D   +TV         S  +A K+K+      D+  ++ +   V+ V    L
Sbjct: 723  LEVLILEKDFKARTVIA---TAKKSLIEASKRKQLPTDFDDVQPNKIIKGYVKSVTNLGL 779

Query: 853  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 912
             +        +  A        +   ++F   QS+   V+++ + +   R LL +   ++
Sbjct: 780  FVCFTGRLTGLILAKYVSKTAHEDLSRRFYKYQSLACRVLSVDTENK--RFLLTIADSND 837

Query: 913  TE----TSSSKRAKKK-SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
            TE    T+     KK    Y  G + +A I  +K  +L ++     +GR+ +T+      
Sbjct: 838  TEGDNLTNPVDSTKKTVEDYAPGVVTKAIIKSVKGTQLNVRLADNLNGRVDVTQCFKSIK 897

Query: 968  NVVENL---FSNFKIGQTVTARIIAKSNKPD----------MKKSFLWELSIKPSMLTVS 1014
            ++ +NL    S F  G  +  ++I   +  +            K  + ELS++ + +   
Sbjct: 898  DI-KNLSQPLSGFHKGDELNVKVIGVHDAKNHTFLPITHNKANKQTIIELSLQDAKVNRK 956

Query: 1015 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1074
             + +  L    DV  G  +  +V  VD  +  ++I+  +K ++  +D + + +    F  
Sbjct: 957  HLSALKL---ADVKKGDELVAFVNNVDRGFVWVSITPSIKGRVSFMDLSDDGTIFHNFDN 1013

Query: 1075 RFHIGKAVTGHVLSINKEKKLLRLV-----LRPFQDGISDKTVDISNDNMQTFIHEGDIV 1129
            R+ IG AV   V  ++ E + L L      +R F D    KT            +   I+
Sbjct: 1014 RYPIGAAVQVKVKEVDNEHQTLALTSREHYIRSFDDVKKGKT------------YPARII 1061

Query: 1130 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1189
              + S +L  +GG V+                +  ++D L+ Y + + D   G+   ++V
Sbjct: 1062 KVKDSYVLVDLGGKVIA---------------SSFITDALNNYSD-KLD--HGFHVNEYV 1103

Query: 1190 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1249
              KVL+I    +    + +SLR                D D+  + ++  EDLS   IV+
Sbjct: 1104 GAKVLDIDADQQ---KISVSLR----------------DEDSTDRTIDSFEDLSRGDIVK 1144

Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1309
            G+VKNV++ G ++ L R + A V +S+LSD Y++  +K F   + V G++++ +    R+
Sbjct: 1145 GFVKNVSTNGVYVSLGRSVFALVRVSDLSDSYLKDWKKFFKPNQSVTGKIINCKE-EGRI 1203

Query: 1310 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSEL 1368
             +TLK S+     ++ +    +L VGDI  G + +   +G+F+ ++ T N+ GLCH SE+
Sbjct: 1204 LMTLKESEVNGELKT-MKTFDDLAVGDIFEGHVTKTTDFGVFVKLDGTVNISGLCHHSEI 1262

Query: 1369 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAI 1428
            SE+ V N+  ++  G++VKVKILK+D  K+++SLGMK+SYF +        + EE D+ +
Sbjct: 1263 SENDVKNVMALFGEGDRVKVKILKIDPSKKQLSLGMKASYFDD--------THEEVDDDV 1314

Query: 1429 E-EVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDN 1487
            E E+   +     E S       + E+ED       + +   +    E    +      N
Sbjct: 1315 EMEIAEEDEEEDDETSG------ESENEDVIIDAEEESDDDDNEEEEEGEEAETSTTESN 1368

Query: 1488 GISQNQGHTDEAKTIDEKNN-----------RHAKKKEKEEREQEIRAAEERL-LEKDAP 1535
             +S N G    A  +D+  +            ++K     +  ++ R  ++ + L   AP
Sbjct: 1369 ALSTN-GFDWTASILDQTEDHDSSSDDEDFMSNSKSSRPRKSRKQTRVEDKTIDLNTRAP 1427

Query: 1536 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1595
            ++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE EK+NIW+
Sbjct: 1428 QSVADFERLLIGNPNSSILWMNYMSFNLQLSEVDKARQIGERALETINYREEQEKMNIWI 1487

Query: 1596 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1655
            A  NLEN +G   +E++  VF++A QY D   +H  L  +   +E+   A EL   M KK
Sbjct: 1488 ALLNLENTFGT--DESLDAVFKKACQYMDSFIIHQKLASILIMSEKYDQARELFKAMGKK 1545

Query: 1656 FKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1714
            F  +   W+     LL Q      + V+ RAL  LP+  HI+ + + A LE+  G  ++ 
Sbjct: 1546 FGQNVLTWVLYGSFLLDQDLNNEARQVLARALQVLPKRDHIEVVRKFAQLEYAKGDVEQA 1605

Query: 1715 RSMFEGILSEYPKRTDLWSIYLDQEIRL-------------GDVDLIRGLFERAI-SLSL 1760
            RS+FEG++++ PKR DLW++Y+DQEI+               +   I  LFER I +  +
Sbjct: 1606 RSLFEGLVADAPKRIDLWNVYIDQEIKYGNGGDGDDDNKDSSNKQQIESLFERVIENKKV 1665

Query: 1761 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
              K+ KF F K+L YE+  G+E+ +  VK KA+EYV
Sbjct: 1666 SRKQAKFFFNKWLAYEEGQGDEKMVGKVKAKAIEYV 1701



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 169/691 (24%), Positives = 311/691 (45%), Gaps = 59/691 (8%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
           L +IF +G  +   V++ +       K++I +S+   ++   L  E +  G +L+  VKS
Sbjct: 176 LKSIFQIGSWLKAKVVETETS----NKKRIEMSIEPEIVNAHLEKEDIVSGNILSCSVKS 231

Query: 109 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRK----VVYLSS 164
           IEDHG IL  G+   + F+    L      +++P    QG+V +     K    ++ +  
Sbjct: 232 IEDHGLILESGIEGLSAFVSNKEL---KNAEIEPSTCAQGLVFTTTVVSKPSGRIITVKP 288

Query: 165 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
              + +K +T      S+D +  G +V   V  + ++G+         GT++   +Q  F
Sbjct: 289 AVPSTTKKLTPITTISSVDAIQVGAIVDALVSDVTDSGIGARVFGLVDGTINFSDVQ-IF 347

Query: 225 PTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLLHNRAPPSHVK------VGDI 276
                K+ +     V ARI+ +      R + L+L  + L      S  +      VG +
Sbjct: 348 SVEELKHKFAIGSNVKARIMAILQKGGVRKLVLSLVSHSLQMGDGTSRTEALEAFPVGHV 407

Query: 277 YDQSKVVRVDR-----GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 331
           +D  +V+  D+      LGL         ST   +  S++ +    K    Y   S  + 
Sbjct: 408 FDVVEVLGSDQEYIFVKLGL---------STFGQIHNSNIDDS---KTLIDYSVSSKHKA 455

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG----KVIAVDSFGAIVQFPGG 387
           R++ +  ++ L     K S  E    +  D+  G ++      KV+  DS G  V+    
Sbjct: 456 RVIAYNMVDNLYVLTFKPSTIEAPYLSVRDIPVGTLLPNCEITKVLP-DSGGIQVKLLDD 514

Query: 388 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSY 446
            +   P  HMS+ ++V P +KF++G+++  R+L  K K   VT +K+LV      ILS++
Sbjct: 515 FQGFIPSNHMSDIKLVYPERKFRIGSKVKGRLLSHKGKTPLVTVRKSLVNLEDDDILSNF 574

Query: 447 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 506
            +A   + T+  + K    G  V F+  ++ F P++E+      + S    +GQVV  +I
Sbjct: 575 EDAKIGMKTNATVEKFVHGGVIVSFFGSLRAFLPKTEISETFVDDASKYLKLGQVVNVKI 634

Query: 507 MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGV-----VDVVTPNAVVVYVIAKGYS 561
           +      +R+ ++ + + +++S     ++ +L+ G+     V V   N  V+  +     
Sbjct: 635 LDINEDQKRLVVT-LKQSSQLSTSQKTEIANLIPGISVVQAVVVEKKNDSVLIELEGSNL 693

Query: 562 KGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSA- 615
           +G +    L+D       A   K+ I    E   +L+L  D ++  ++ +AK SLI ++ 
Sbjct: 694 RGVVHDGQLSDGNYEQNRALFKKTEINSKLE---VLILEKDFKARTVIATAKKSLIEASK 750

Query: 616 -QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 674
            +QLP+D   + PN ++ GYV ++   G FV F GRLTG             DLS+ +Y 
Sbjct: 751 RKQLPTDFDDVQPNKIIKGYVKSVTNLGLFVCFTGRLTGLILAKYVSKTAHEDLSRRFYK 810

Query: 675 GQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            QS+   +L V++E  R  L++  S  +  D
Sbjct: 811 YQSLACRVLSVDTENKRFLLTIADSNDTEGD 841



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 132/579 (22%), Positives = 233/579 (40%), Gaps = 97/579 (16%)

Query: 862  SIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 921
            +I ++ V  ++ ++   K F  G +V A +MA+       +L+L L + S      + R 
Sbjct: 338  TINFSDVQIFSVEELKHK-FAIGSNVKARIMAILQKGGVRKLVLSLVSHSLQMGDGTSRT 396

Query: 922  KKKSSYDVGSLVQA-EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 980
            +   ++ VG +    E+       + +K G+   G+IH + ++D K+ +      ++ + 
Sbjct: 397  EALEAFPVGHVFDVVEVLGSDQEYIFVKLGLSTFGQIHNSNIDDSKTLI------DYSVS 450

Query: 981  QTVTARIIAKSNKPDMKKSFLWELSIKPSM-----LTVSEIGSKLLFEECDVSIGQRVTG 1035
                AR+IA  N  D     L+ L+ KPS      L+V +I    L   C+++       
Sbjct: 451  SKHKARVIA-YNMVDN----LYVLTFKPSTIEAPYLSVRDIPVGTLLPNCEIT------- 498

Query: 1036 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS------- 1088
               KV  +   + +      Q FI  +     +L   +R+F IG  V G +LS       
Sbjct: 499  ---KVLPDSGGIQVKLLDDFQGFIPSNHMSDIKLVYPERKFRIGSKVKGRLLSHKGKTPL 555

Query: 1089 INKEKKLLRL----VLRPFQDG-ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1143
            +   K L+ L    +L  F+D  I  KT    N  ++ F+H                GG+
Sbjct: 556  VTVRKSLVNLEDDDILSNFEDAKIGMKT----NATVEKFVH----------------GGV 595

Query: 1144 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1203
            +V     L   +  TE+    V D  S Y             GQ V  K+L+I+   +  
Sbjct: 596  IVSFFGSLRAFLPKTEISETFVDDA-SKY----------LKLGQVVNVKILDINEDQK-- 642

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM-IVQGYVKNVTSKGCFI 1262
              + ++L+          SS LST   T      +I +L P + +VQ  V    +    I
Sbjct: 643  -RLVVTLK---------QSSQLSTSQKT------EIANLIPGISVVQAVVVEKKNDSVLI 686

Query: 1263 ML-SRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
             L    L   V    LSDG  E      K+  I   +   +L  +  ++ V  T K S  
Sbjct: 687  ELEGSNLRGVVHDGQLSDGNYEQNRALFKKTEINSKLEVLILEKDFKARTVIATAKKSLI 746

Query: 1319 RTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
              + + ++  +  ++    I+ G +K V + GLF+      L GL     +S+   +++ 
Sbjct: 747  EASKRKQLPTDFDDVQPNKIIKGYVKSVTNLGLFVCFTG-RLTGLILAKYVSKTAHEDLS 805

Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
              +   + +  ++L VD E +R  L +  S    + DNL
Sbjct: 806  RRFYKYQSLACRVLSVDTENKRFLLTIADSN-DTEGDNL 843



 Score = 47.4 bits (111), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 130/306 (42%), Gaps = 20/306 (6%)

Query: 217  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDI 276
            IFH        N+ N Y     V  ++  VD   + + LT   + + +      VK G  
Sbjct: 1007 IFH--------NFDNRYPIGAAVQVKVKEVDNEHQTLALTSREHYIRSF---DDVKKGKT 1055

Query: 277  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 336
            Y  +++++V     +L+D+    +++     I+D       KL+  +     V  ++L  
Sbjct: 1056 Y-PARIIKVKDSY-VLVDLGGKVIASSF---ITDALNNYSDKLDHGFHVNEYVGAKVLDI 1110

Query: 337  -RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 395
                + ++  +    + +  + +  D+  G +VKG V  V + G  V     V AL  + 
Sbjct: 1111 DADQQKISVSLRDEDSTDRTIDSFEDLSRGDIVKGFVKNVSTNGVYVSLGRSVFALVRVS 1170

Query: 396  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLI 454
             +S+  +    K FK    +  +++  K + RI +T K++ V  +L  + ++ +     I
Sbjct: 1171 DLSDSYLKDWKKFFKPNQSVTGKIINCKEEGRILMTLKESEVNGELKTMKTFDDLAVGDI 1230

Query: 455  THGWITKIEKHGCFVRFYNGVQ--GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 512
              G +TK    G FV+    V   G    SE+  +      +++  G  VK +I+   P+
Sbjct: 1231 FEGHVTKTTDFGVFVKLDGTVNISGLCHHSEISENDVKNVMALFGEGDRVKVKILKIDPS 1290

Query: 513  SRRINL 518
             ++++L
Sbjct: 1291 KKQLSL 1296


>gi|367010384|ref|XP_003679693.1| hypothetical protein TDEL_0B03530 [Torulaspora delbrueckii]
 gi|359747351|emb|CCE90482.1| hypothetical protein TDEL_0B03530 [Torulaspora delbrueckii]
          Length = 1715

 Score =  378 bits (970), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 347/1218 (28%), Positives = 589/1218 (48%), Gaps = 182/1218 (14%)

Query: 642  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701
            GC + F G + GF P S+  +           +GQ+V   ILDV+ E  RI      +C 
Sbjct: 610  GCHLLFFGGVRGFLPNSEISEVFVKRPEDHSRLGQTVMVKILDVDEERARII----ATCK 665

Query: 702  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 759
             S+D +  Q+  +  +K+ + ++          V+  +     +  V E N+ G+  V+ 
Sbjct: 666  VSSDEAEEQKEAI--DKMVLGRT---------MVDVTVAEKTKDSLVVEMNNVGLRGVIY 714

Query: 760  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
                SD    I  ++     +  GS + A ++D     ++ + +LK   I   ++A +N+
Sbjct: 715  VGHLSD--SRIEQNRAQLKKIRIGSELNALVIDKDVRNQVFNATLKESLI---KDAQNNQ 769

Query: 820  QAQKKKRKREASKDLGVHQTVNAIVE---IVKEN--YLVLSLPEY---NHSIGYASVSDY 871
                 +  +E      +H  + +I +    V  N  ++ + LP Y   +  + +A     
Sbjct: 770  LPVTYEDIKEKKLTTAMHGYIKSISDKGLFVAFNGKFVGMVLPSYAVESRDVDFA----- 824

Query: 872  NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA---------- 921
                   K F   QSV A +  L +     R LL  K   E +  SS +A          
Sbjct: 825  -------KAFYINQSVAAYL--LRTDDANQRFLLTFK---EPKDKSSDKAASLAAINPVD 872

Query: 922  ---KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK---SNVVENLFS 975
               K+   + +G ++ A+I  +K  +L +      +GRI I+EV D     SN  E L  
Sbjct: 873  KSIKRLEDFKLGKVIDAKIKGVKKNQLNVILADNLYGRIDISEVFDSYEAISNPKEPL-G 931

Query: 976  NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1026
              K    +  ++I   +    K          S + EL+++ SM+  S    + +    D
Sbjct: 932  GMKKDDIIRVKVIGNHDVRGHKFLPITHTVTNSTVLELTMRKSMINDSNCKVQSI---ED 988

Query: 1027 VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGKAVT 1083
            V++GQ V G+V  Y  +N W  LT+S  LKA++ + D   + S+  + F+ +F +G A+ 
Sbjct: 989  VAVGQEVLGFVNNYASNNLW--LTVSPTLKAKISVFDLTDDSSKYSKNFEEQFPLGSALK 1046

Query: 1084 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI-----LS 1138
              V  I  E   + +  R          V I+ D     +  GD +  +I KI     L 
Sbjct: 1047 VSVKGIESEHGFITVTGRS-------HAVQIATD-----VKVGDKLPAKIVKINEKYILL 1094

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
             +GG VV I         F        S PL+   EG  +        Q +   V+ I  
Sbjct: 1095 NLGGDVVGISFAPDALDDF--------SVPLNVAFEGMVN--------QIIPATVVSIDS 1138

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   ++LSLRS+                +   + ++  +D+    +VQ  VK VT K
Sbjct: 1139 E---NDKIKLSLRSA----------------NPKTREIKSHKDIKQGDVVQALVKRVTDK 1179

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ LS  L+A V +S LSD +++  +K +   + V G+V++ E  S R+ +TL+ S+ 
Sbjct: 1180 GIFVYLSTNLEAFVPVSKLSDSFLKEWKKFYKPMQCVVGKVINSENDS-RILLTLRESEV 1238

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIE 1377
                   + N  ++ VGDI  G +K V  +G+F+ +++T N+ GL H SE+++   +++ 
Sbjct: 1239 -NGKLHVLKNYDDIKVGDIFEGNVKNVTDFGVFVKLDDTVNITGLAHRSEIADTAPEDLS 1297

Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYF-KND-----ADNLQMSSEEESDEAIEEV 1431
            +++  G+++K  ++KV+ +K++ISL +K+S+F K D     A+   +  + ++DEA+E+V
Sbjct: 1298 SLFGNGDRLKAYVIKVNPDKKQISLSLKASHFSKQDNGEKKAETQDVVEDNDADEAMEQV 1357

Query: 1432 GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQ 1491
              YN      N S A  D++M+ ++             S P        ++P    G+S 
Sbjct: 1358 -VYNH-----NESDAESDVEMDYQE-------------SAPA-------KKPQQSEGLSL 1391

Query: 1492 NQGHTDEAKTIDEKNNRHAKKKEKEEREQEIR--------AAEERLLE--KDAPRTPDEF 1541
            + G    A  +D+ +       +++  E              E++ ++    AP +  +F
Sbjct: 1392 SAGFDWTASILDQAHEDEESSDDEDFTETNKSKRHRKKKHVVEDKTIDISTRAPESVVDF 1451

Query: 1542 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1601
            ERL+  +PNSS +W+ YMAF L +++VEKAR IAERAL+TI+ REE EKLNIW+A  NLE
Sbjct: 1452 ERLIMGNPNSSVIWMNYMAFQLQLSEVEKAREIAERALKTISFREEGEKLNIWIALLNLE 1511

Query: 1602 NEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSC 1660
            N +G   +E + +VF+RA QY D   +H  LL +Y+ +E+   A EL     KKF     
Sbjct: 1512 NTFGT--DETLEEVFKRACQYMDSFTIHNKLLSIYQMSEKFDQAAELFKATAKKFGSEKV 1569

Query: 1661 KVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE 1719
             +WL   + LL Q Q +  ++++  AL +L +  HI+ + + A LEF  G A+RGRS+FE
Sbjct: 1570 SIWLAWGEFLLSQNQIQEARSLLSNALKALAKRSHIEVVRKFAQLEFAKGDAERGRSLFE 1629

Query: 1720 GILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV 1779
            G++++ PKR DLW++YLDQEI+ G+   +  +FER I+  +  K+ KF F K+L++E+S 
Sbjct: 1630 GLMADAPKRIDLWNVYLDQEIKAGEKKKVENIFERVITKKITRKQAKFFFNKWLQFEESH 1689

Query: 1780 GEEERIEYVKQKAMEYVE 1797
             + +  EYVK KA+E+ E
Sbjct: 1690 EDLKSAEYVKSKAIEFAE 1707



 Score =  180 bits (457), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 284/1205 (23%), Positives = 515/1205 (42%), Gaps = 159/1205 (13%)

Query: 49   LPTIFHVGQLVSCIVL---QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
            L   F +GQ + C V+     D ++K+  K++I LS+  S +    + E + +   +   
Sbjct: 194  LKNYFQLGQWLRCSVVLNSTFDTERKKNQKKRIELSIAPSDV-NPFTEEDLDKHTAIQCS 252

Query: 106  VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 165
            VKS EDHG  L  G+  FTGF+P+  L     ++  PG +  G +    ++ + V ++ D
Sbjct: 253  VKSTEDHGATLDIGISGFTGFIPKKALPNFEQLE--PGSVFLGNISK--KSGRAVTVNLD 308

Query: 166  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 225
             +  +  +T+     SID +VPG  +    + + +NG++       +G +    L+N F 
Sbjct: 309  FNAKNSKITQ---VSSIDAVVPGQAIDLLCEDVTKNGIIGKAFGLISGFLGTSQLRN-FS 364

Query: 226  TTNWKNDYNQHKKVNARI---LFVDPTSRAVGLTLNPYLLH------NRAPPSHVKVGDI 276
                K+ +     +  R+   L     ++ + L++ P++L        +       VG  
Sbjct: 365  LEELKHKFAVGSSIRCRVIASLLNRDATKVLILSILPHILSLETKLLEKESLESFPVGYK 424

Query: 277  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK----KYKEGSCVRVR 332
             D   V+  D              S   YV +    EE + ++      +    S V  R
Sbjct: 425  LDSCAVLGRD--------------SEFLYVAVD---EERIGQVHSSKIGEVNHQSSVAAR 467

Query: 333  ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV-KGKVIAVDSFGAIVQ-FPGGVKA 390
            +LG+  ++ L          +       D+  G ++ K +V+ V S G  ++ F     A
Sbjct: 468  VLGYNEVDRLYELSTDPEVLKLKYLRPKDIPVGTIIPKCEVVTVSSSGIQLKLFNDQFTA 527

Query: 391  LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV--KSKLAILSSYA 447
              P  H+S+ ++V P +KFK+G+++  ++L V  +  I VT KK+LV  +  + ++SSYA
Sbjct: 528  FVPPLHISDTKLVYPERKFKIGSKVKGKILNVDGRGHIFVTLKKSLVNLEEDIEVVSSYA 587

Query: 448  EATDRLI------THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 501
             A  R I      T   +   +  GC + F+ GV+GF P SE+       P     +GQ 
Sbjct: 588  TA--RKIQEINQKTVATVQAFQAKGCHLLFFGGVRGFLPNSEISEVFVKRPEDHSRLGQT 645

Query: 502  VKCRIMSSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVI 556
            V  +I+       RI  +  +      E     D +V   ++V   V   T +++VV + 
Sbjct: 646  VMVKILDVDEERARIIATCKVSSDEAEEQKEAIDKMVLGRTMVDVTVAEKTKDSLVVEMN 705

Query: 557  AKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA--KYSLIN 613
              G  +G I   HL+D  +E        I+ G E + L V+D +  N + +A  K SLI 
Sbjct: 706  NVGL-RGVIYVGHLSDSRIEQNRAQLKKIRIGSELNAL-VIDKDVRNQVFNATLKESLIK 763

Query: 614  SAQ--QLP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
             AQ  QLP    D       + +HGY+ +I + G FV F G+  G    S AV+ +  D 
Sbjct: 764  DAQNNQLPVTYEDIKEKKLTTAMHGYIKSISDKGLFVAFNGKFVGMVLPSYAVESRDVDF 823

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
            +K +Y+ QSV + +L  +    R  L+ K+    S+D            K A L +    
Sbjct: 824  AKAFYINQSVAAYLLRTDDANQRFLLTFKEPKDKSSD------------KAASLAAINPV 871

Query: 729  GSELKWVEGFIIGSVIEGKVH--ESNDFGVV--------VSFEEHSDVYGFITHHQLAGA 778
               +K +E F +G VI+ K+   + N   V+        +   E  D Y  I++ +    
Sbjct: 872  DKSIKRLEDFKLGKVIDAKIKGVKKNQLNVILADNLYGRIDISEVFDSYEAISNPKEPLG 931

Query: 779  TVESGSVIQAAIL---DVAKAERL-----------VDLSLKTVFIDRFREANSNRQAQKK 824
             ++   +I+  ++   DV   + L           ++L+++   I+     +SN + Q  
Sbjct: 932  GMKKDDIIRVKVIGNHDVRGHKFLPITHTVTNSTVLELTMRKSMIN-----DSNCKVQ-- 984

Query: 825  KRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ--KFPQKQF 881
                 + +D+ V Q V   V     N L L++ P     I    ++D +++  K  ++QF
Sbjct: 985  -----SIEDVAVGQEVLGFVNNYASNNLWLTVSPTLKAKISVFDLTDDSSKYSKNFEEQF 1039

Query: 882  LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 941
              G ++  +V  + S    G +         T T  S   +  +   VG  + A+I +I 
Sbjct: 1040 PLGSALKVSVKGIESEH--GFI---------TVTGRSHAVQIATDVKVGDKLPAKIVKIN 1088

Query: 942  PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1001
               + L  G    G     +  DD S  +   F    + Q + A +++  ++ D  K   
Sbjct: 1089 EKYILLNLGGDVVGISFAPDALDDFSVPLNVAFEGM-VNQIIPATVVSIDSENDKIK--- 1144

Query: 1002 WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILD 1061
              LS++ +     EI S       D+  G  V   V +V ++   + +S +L+A  F+  
Sbjct: 1145 --LSLRSANPKTREIKS-----HKDIKQGDVVQALVKRVTDKGIFVYLSTNLEA--FVPV 1195

Query: 1062 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN-DNMQ 1120
            S    S L+E+++ +   + V G V++   + ++L L LR  +  ++ K   + N D+++
Sbjct: 1196 SKLSDSFLKEWKKFYKPMQCVVGKVINSENDSRIL-LTLR--ESEVNGKLHVLKNYDDIK 1252

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
                 GDI  G +  +     G+ V++    ++ G  H +E+ +    D  S +  G  D
Sbjct: 1253 V----GDIFEGNVKNVTD--FGVFVKLDDTVNITGLAHRSEIADTAPEDLSSLFGNG--D 1304

Query: 1179 PLSGY 1183
             L  Y
Sbjct: 1305 RLKAY 1309



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 111/258 (43%), Gaps = 25/258 (9%)

Query: 1168 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1227
            PL   D     P   +  G  VK K+L     V G  H+ ++L+ SL         +L  
Sbjct: 531  PLHISDTKLVYPERKFKIGSKVKGKIL----NVDGRGHIFVTLKKSL--------VNLEE 578

Query: 1228 DVDTPGKHL--EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1285
            D++    +    KI++++   +    V+   +KGC ++    +   +  S +S+ +V+ P
Sbjct: 579  DIEVVSSYATARKIQEINQKTV--ATVQAFQAKGCHLLFFGGVRGFLPNSEISEVFVKRP 636

Query: 1286 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG-QIKR 1344
            E    +G+ V  ++L V+    R+  T K S      Q E   +  + +G  ++   +  
Sbjct: 637  EDHSRLGQTVMVKILDVDEERARIIATCKVSSDEAEEQKEA--IDKMVLGRTMVDVTVAE 694

Query: 1345 VESYGLFITIENTNLVGLCHVSELSEDHVD----NIETIYRAGEKVKVKILKVDKEKRRI 1400
                 L + + N  L G+ +V  LS+  ++     ++ I R G ++   ++  D   +  
Sbjct: 695  KTKDSLVVEMNNVGLRGVIYVGHLSDSRIEQNRAQLKKI-RIGSELNALVIDKDVRNQVF 753

Query: 1401 SLGMKSSYFKNDADNLQM 1418
            +  +K S  K DA N Q+
Sbjct: 754  NATLKESLIK-DAQNNQL 770


>gi|146412582|ref|XP_001482262.1| hypothetical protein PGUG_05282 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1674

 Score =  378 bits (970), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 389/1496 (26%), Positives = 685/1496 (45%), Gaps = 183/1496 (12%)

Query: 362  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
            ++PG++V   V  +   G   +  G V     L ++ E+++     KF +G  +  RV+ 
Sbjct: 301  IQPGIIVDALVAEITKEGITTKVFGMVDGTISLLNIGEYDLDSLNHKFTIGNSIKARVIA 360

Query: 422  VKSKRITVTHKKTLVKSKLA-ILS-SYAEATDRLITH--GWI-TKIEKHGC---FVRFYN 473
            V  K  T    K LV S L  ILS    E TD L     G++  ++E  G    ++    
Sbjct: 361  VLLKGGT----KKLVLSILPRILSLDSQENTDALEAFPIGFVFDQVEVIGLDSNYIFVST 416

Query: 474  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS--------SIPASRRINLSFMMKPT 525
            G   +  +  +      +    Y VG   K R++         ++    +I  +  M P 
Sbjct: 417  GTSSYHGQVHISKINQEKVIDDYFVGSKHKARVIGLNKFEGLLTLTMDPKIIDTKFMVPL 476

Query: 526  RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMK 581
            ++   + +  G ++      V P+   + V         +P EH++D    + E    + 
Sbjct: 477  QIPVGEYINGGEIIK-----VLPDGAGIQVKIFNDFDAFVPPEHMSDVRLVYPERKYKVG 531

Query: 582  SVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIE 640
            S IK         VL    S + ++ K +L+N    ++ S+             V   + 
Sbjct: 532  SKIKGR-------VLKVHGSKIFITLKKTLVNIEDDEVLSNFELAEIGLKTPATVEKFVH 584

Query: 641  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
             G  V F G L  F P+++  +    D       GQ+V   I+D +    R+ ++LKQ+ 
Sbjct: 585  NGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIMDRDETQQRLIVTLKQND 644

Query: 701  CS----STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHESNDFG 755
             +    S  +S +    ++E  I  ++ SK   S +  +EG  + G +  G++ + N   
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASI--VEKSKDKDSVIVEIEGSNLRGVIYAGQLSDGN--- 699

Query: 756  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 815
                +E+   +Y            +++G  ++A +L+     R V LS K  FI+     
Sbjct: 700  ----YEQTRALY----------KKIQAGDKLEAVVLERDMKTRSVILSAKQSFIN----- 740

Query: 816  NSNRQAQKKKRKREASKDLGVHQTV-NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 874
                   K  +      D+ V   V    ++ V    L ++       +  A  +  N  
Sbjct: 741  -----GAKNNQIPSQFSDVTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPN 795

Query: 875  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE--------TSSSKRAKKKSS 926
            +   K+F   QSV   V+ L + +   R LL L +  ++E          S+K  K  + 
Sbjct: 796  EDILKRFYKNQSVSCRVIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTK--KLITD 851

Query: 927  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVT 984
            Y  G+  QA+I  IK  +L ++      GR+ IT+  +  S++ +     S F   + ++
Sbjct: 852  YTPGAKTQAKIKSIKGTQLNVQLADNLQGRLDITQCFEKWSDIKDKNQPLSQFHKDEILS 911

Query: 985  ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG---SKLLFEECDVSIGQRVTGYVYKVD 1041
             R++      D K      +S + S  T+ E+       + E  DV +G     +V  + 
Sbjct: 912  VRVLGYH---DAKNHTFLPISHRKSKNTILELTLLEKDPITEIKDVKVGSEHVAFVNNLA 968

Query: 1042 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1101
              +  +++S  +K ++  +D + E S  ++ + R  IG A+   V  I++E K + L  R
Sbjct: 969  RGFVWVSMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNIILTSR 1028

Query: 1102 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1161
                     TV    D     +        R+ K+L     ++V++   +    + T   
Sbjct: 1029 KH-------TVTKFED-----VELNKQYPARVLKVLPSF--VLVELAHDVVASSYIT--- 1071

Query: 1162 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1221
                 D L+ Y     +     D   +    VL + +  +    + + LR        TN
Sbjct: 1072 -----DALNDYSSALNEVFHAND---YTTATVLAVDKDSK---KISVLLR--------TN 1112

Query: 1222 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1281
             +     VD   K +  +EDL    +V+G+VKNV + G ++ L R +   V +S+LSD Y
Sbjct: 1113 KA-----VD---KVINSVEDLQRGDVVKGFVKNVANNGVYVSLGRSVHGLVRVSDLSDSY 1164

Query: 1282 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL---SNLHVGDIV 1338
            ++  +K F   + V G+V++ +    RV +TLK S+       E+N L    +L  G++ 
Sbjct: 1165 LKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESEV----NGELNVLKKFEDLKEGEVY 1219

Query: 1339 IGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1397
             G +++V  +G+F+ ++ T N+ GLCH SE++++   +++ ++  G++VKVKIL ++ EK
Sbjct: 1220 EGSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEK 1279

Query: 1398 RRISLGMKSSYFKNDA-------DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDM 1450
            +++SLGMK SYF  +A       D+++M+  EE+  +  E    +   ++E +  A  D+
Sbjct: 1280 KQLSLGMKVSYFAPEATQNEDSDDDVEMAESEEATPSASESSDESDEEIVEGAFEADSDV 1339

Query: 1451 DMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHA 1510
            D + E+  ++V                      D   G+S N G    A  +D+      
Sbjct: 1340 DHDDEETSNVV--------------------AEDSGMGLSTN-GFDWTASILDQAQESDE 1378

Query: 1511 K-------KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1563
                     K+K++R  ++   +   +   AP++  +FER++  SPNSS +W+ YM+F L
Sbjct: 1379 SSDDEDFVNKKKKKRSTKVVEDKTADINTRAPQSVSDFERMLIGSPNSSVLWMNYMSFQL 1438

Query: 1564 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1623
             ++++EKAR I ERAL+TIN REE EKLNIW+A  NLEN +    +E++   F+R+ QY 
Sbjct: 1439 QLSEIEKAREIGERALKTINYREEQEKLNIWIALLNLENTFDT--KESLEDTFRRSCQYM 1496

Query: 1624 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVV 1682
            +P  +H  L  +Y  +E+   A  L   MIKKF  +  VW+     LL +Q  + V   +
Sbjct: 1497 EPLTMHQKLASIYTLSEKFDEATRLYKVMIKKFSKNVSVWVAYASYLLDRQMNDEVHEAL 1556

Query: 1683 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1742
             +A+ +LP  + I+ + + A LEF  G  ++GRS+FEG++++ PKR DLW++YLDQEI+L
Sbjct: 1557 AKAMQALPSKESIEVVKKFAQLEFTKGDPEQGRSLFEGLMADAPKRIDLWNVYLDQEIKL 1616

Query: 1743 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             D   +  LFER I+  L  K+ KF F K+L+YE+   +E+    VK KA EYVE+
Sbjct: 1617 NDKSKVENLFERLITKKLTKKQAKFFFTKWLKYEEDQNDEKSGARVKAKAAEYVEA 1672



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 173/683 (25%), Positives = 314/683 (45%), Gaps = 46/683 (6%)

Query: 45  EDNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 101
           +DN LP   +IF  G+ +   V + +  + +  K++I  ++    + + +  E +  G +
Sbjct: 159 KDNELPDLQSIFKAGEWLRAKVTEAELSQSK--KKRIQFTIEPENVNESIEDEDLIPGNL 216

Query: 102 LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP---GLLLQGVVRSIDRTRK 158
           L   V S+ED G IL+ G+   +GF+    L+ N+ ID++    G ++   + +   TR 
Sbjct: 217 LQCSVVSVEDRGVILNTGVSGKSGFISNKELS-NANIDLQSLSEGYVMMTSIAAKPTTRT 275

Query: 159 VVYLSSDPDTVSKCVTKD-LKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
           +   S  P T+S  + K+ +  IS +D + PG++V   V  I + G+         GT+ 
Sbjct: 276 I---SLRPATLSVSLKKNKVSNISSVDAIQPGIIVDALVAEITKEGITTKVFGMVDGTIS 332

Query: 217 IFHLQNTFPTTNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLL-----HNRAPPS 269
           + ++   +   +  + +     + AR++ V     ++ + L++ P +L      N     
Sbjct: 333 LLNI-GEYDLDSLNHKFTIGNSIKARVIAVLLKGGTKKLVLSILPRILSLDSQENTDALE 391

Query: 270 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 329
              +G ++DQ +V+ +D      + + +   S    V IS + +E   K+   Y  GS  
Sbjct: 392 AFPIGFVFDQVEVIGLDSNY---IFVSTGTSSYHGQVHISKINQE---KVIDDYFVGSKH 445

Query: 330 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPG 386
           + R++G    EGL T  +     +        +  G  + G ++I V  D  G  V+   
Sbjct: 446 KARVIGLNKFEGLLTLTMDPKIIDTKFMVPLQIPVGEYINGGEIIKVLPDGAGIQVKIFN 505

Query: 387 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSS 445
              A  P  HMS+  +V P +K+KVG+++  RVL V   +I +T KKTLV      +LS+
Sbjct: 506 DFDAFVPPEHMSDVRLVYPERKYKVGSKIKGRVLKVHGSKIFITLKKTLVNIEDDEVLSN 565

Query: 446 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 505
           +  A   L T   + K   +G  V F+  ++ F P++E+      +       GQ V  R
Sbjct: 566 FELAEIGLKTPATVEKFVHNGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVR 625

Query: 506 IMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG-------VVDVVTPNAVVVYVIAK 558
           IM      +R  L   +K   V++     + S+V G       +V+       V+  I  
Sbjct: 626 IMDRDETQQR--LIVTLKQNDVTKAQQSAVSSVVPGKTIVEASIVEKSKDKDSVIVEIEG 683

Query: 559 GYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQ 616
              +G I    L+D + E    +   I+ G + + +++  D ++ +++LSAK S IN A+
Sbjct: 684 SNLRGVIYAGQLSDGNYEQTRALYKKIQAGDKLEAVVLERDMKTRSVILSAKQSFINGAK 743

Query: 617 --QLPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 673
             Q+PS  S +   + V+ GY+ ++   G FV F G+LTG      A      D+ K +Y
Sbjct: 744 NNQIPSQFSDVTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPNEDILKRFY 803

Query: 674 VGQSVRSNILDVNSETGRITLSL 696
             QSV   ++ +++E  R  LSL
Sbjct: 804 KNQSVSCRVIRLDNENKRFLLSL 826



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 203/928 (21%), Positives = 390/928 (42%), Gaps = 112/928 (12%)

Query: 504  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 563
             R +S  PA+  ++L    K + +S  D ++ G +V  +V  +T   +   V   G   G
Sbjct: 273  TRTISLRPATLSVSLK-KNKVSNISSVDAIQPGIIVDALVAEITKEGITTKVF--GMVDG 329

Query: 564  TIPT----EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP 619
            TI      E+  D L H   + + IK        ++L   +  L+LS    +++   Q  
Sbjct: 330  TISLLNIGEYDLDSLNHKFTIGNSIKARV---IAVLLKGGTKKLVLSILPRILSLDSQEN 386

Query: 620  SDASHIHPNSVVHGYVCNIIET-GCFVRFLGRLTGFAPRSKAVDGQRADLSKT---YYVG 675
            +DA    P     G+V + +E  G    ++   TG +     V   + +  K    Y+VG
Sbjct: 387  TDALEAFP----IGFVFDQVEVIGLDSNYIFVSTGTSSYHGQVHISKINQEKVIDDYFVG 442

Query: 676  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
               ++ ++ +N   G +TL++        D   +   F++  +I +      NG E+  +
Sbjct: 443  SKHKARVIGLNKFEGLLTLTM--------DPKIIDTKFMVPLQIPV--GEYINGGEI--I 490

Query: 736  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 795
            +    G+ I+ K+   NDF   V  E  SDV       +      + GS I+  +L V  
Sbjct: 491  KVLPDGAGIQVKIF--NDFDAFVPPEHMSDVRLVYPERKY-----KVGSKIKGRVLKVHG 543

Query: 796  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 855
            ++  + L    V I+   E  SN +  +   K  A+ +  VH    AIV       L   
Sbjct: 544  SKIFITLKKTLVNIED-DEVLSNFELAEIGLKTPATVEKFVHN--GAIVSFF--GNLRAF 598

Query: 856  LPEYNHSIGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETE 914
            LP+  + I    V D        K FL  GQ+V   +M      T  RL++ LK   + +
Sbjct: 599  LPK--NEISETFVKD-------AKDFLKKGQTVNVRIM--DRDETQQRLIVTLK---QND 644

Query: 915  TSSSKRAKKKSSYDVGSLVQAEITE--------IKPLELRLKFGIGFHGRIHITEVNDDK 966
             + ++++   S     ++V+A I E        I  +E     G    G I+  +++D  
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASIVEKSKDKDSVIVEIE-----GSNLRGVIYAGQLSDGN 699

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1026
                  L+   + G  + A ++ +    DMK   +  LS K S +  ++  +++  +  D
Sbjct: 700  YEQTRALYKKIQAGDKLEAVVLER----DMKTRSVI-LSAKQSFINGAK-NNQIPSQFSD 753

Query: 1027 VSIGQRV-TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            V++  +V TGY+  V N    +     L   +    +   P+E  +  +RF+  ++V+  
Sbjct: 754  VTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPNE--DILKRFYKNQSVSCR 811

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG- 1142
            V+ ++ E K  R +L    +  S+   ++ N  D+ +  I +        +KI S  G  
Sbjct: 812  VIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTKKLITDYTPGAKTQAKIKSIKGTQ 869

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
            L VQ+  +L GR+  T+    C        D+ Q  PLS + + + +  +VL        
Sbjct: 870  LNVQLADNLQGRLDITQ----CFEKWSDIKDKNQ--PLSQFHKDEILSVRVLGYHDAKNH 923

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
            TF + +S R S + +      +L+     P   + +I+D+        +V N+     ++
Sbjct: 924  TF-LPISHRKSKNTIL-----ELTLLEKDP---ITEIKDVKVGSEHVAFVNNLARGFVWV 974

Query: 1263 MLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
             +S  +  +V   +LSD     E  E   PIG  +  +V  ++   K +   + TS   T
Sbjct: 975  SMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNI---ILTSRKHT 1031

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDHVDNIETI 1379
             ++ E   L+  +   +    +K + S   F+ +E   ++V   ++++   D+   +  +
Sbjct: 1032 VTKFEDVELNKQYPARV----LKVLPS---FVLVELAHDVVASSYITDALNDYSSALNEV 1084

Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + A +     +L VDK+ ++IS+ ++++
Sbjct: 1085 FHANDYTTATVLAVDKDSKKISVLLRTN 1112



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 125/299 (41%), Gaps = 40/299 (13%)

Query: 143  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG---ISIDLLVPGMMVSTRVQSIL 199
            G  ++  V+ ID   K + L+S   TV+K    +L       +  ++P  ++      ++
Sbjct: 1006 GAAIKAKVKQIDEEHKNIILTSRKHTVTKFEDVELNKQYPARVLKVLPSFVLVELAHDVV 1065

Query: 200  ENGVMLSFLTYFTGTVD-IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 258
             +  +   L  ++  ++ +FH           NDY       A +L VD  S+ + + L 
Sbjct: 1066 ASSYITDALNDYSSALNEVFH----------ANDY-----TTATVLAVDKDSKKISVLLR 1110

Query: 259  PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVA 312
                 N+A    +   +   +  VV+     G + ++ +  V      S    V +SD++
Sbjct: 1111 T----NKAVDKVINSVEDLQRGDVVK-----GFVKNVANNGVYVSLGRSVHGLVRVSDLS 1161

Query: 313  EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVK 369
            +  ++  +K +K+   V  +++  +  EG     LK S   G   ++    D+K G V +
Sbjct: 1162 DSYLKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESEVNGELNVLKKFEDLKEGEVYE 1220

Query: 370  GKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
            G V  V  FG  V+  G   V  LC    +++ + V     F  G  +  ++LG+ S++
Sbjct: 1221 GSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEK 1279


>gi|50294291|ref|XP_449557.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528871|emb|CAG62533.1| unnamed protein product [Candida glabrata]
          Length = 1706

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 351/1273 (27%), Positives = 599/1273 (47%), Gaps = 185/1273 (14%)

Query: 592  QLLVLDNESSNLLLSAKYSLINSAQ-------QLPSDASHIHPNSVVHGYVCNIIETGCF 644
            ++L +DN   +++ + K SL+N  +          +  S  + N    G V +    GC 
Sbjct: 544  RILNVDNHG-HIIATMKKSLVNDEELEKPVIESFETAKSIKNKNEKTVGTVQSFNGHGCV 602

Query: 645  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
            + F G +TGF P+S+  +           +GQ+V+  +L+V+ E  RI ++    C  S 
Sbjct: 603  IMFFGGVTGFLPKSEVSEVFVKRAEDHLRLGQTVQVKVLEVDEERRRIIVT----CKVSN 658

Query: 705  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE-- 762
            + +  Q+  +   KI                      S+IE  V E     V+V   +  
Sbjct: 659  EEAQQQKSIIESLKIGQ--------------------SIIETVVVEKTKDSVIVEIPDVG 698

Query: 763  -HSDVY-GFITHHQLAGATVES-----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 815
                +Y G I+  ++     E      GS +   ++D     ++ +LSLK   +   ++A
Sbjct: 699  IRGVIYVGHISDERIEQCRAEIKKIRIGSKLTGLVIDKDSRTQIFNLSLKKSLM---KDA 755

Query: 816  NSNRQAQKKKRKREASKDLGVHQTVNAIVEI-----VKENYLVLSLPEYNHSIGYASVSD 870
             + R         +  K   +H  V +I            ++ L LP Y        +  
Sbjct: 756  QNKRLPTTFAEITKFKKTDPLHGYVKSISSTGVFVAFTGKFVGLVLPSYAVESRQVDI-- 813

Query: 871  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK------K 924
                   +K F + QSV A +  L +     R LL LKA    + + +  A+       K
Sbjct: 814  -------EKAFYSNQSVTAYL--LRTDDDNERFLLTLKAPKVEKAAETISAENIIDTSIK 864

Query: 925  SSYDV--GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIG 980
            S  D+  G ++ A+I  +K  +L +      HGR+ I+EV D+ +++ +  +  S++K  
Sbjct: 865  SVKDIKLGKILDAKIKGVKKNQLNIILADNVHGRVDISEVFDNYNDIKDKKHPLSHYKAN 924

Query: 981  QTVTARIIA----KSNKP-----DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1031
              V  +II     KS+K      +  K  ++EL++KPS L   ++      +  D+++G 
Sbjct: 925  DKVRVKIIGHHDLKSHKSLPITHNFVKGTVFELTMKPSQLKSKDVKE---LDIRDITVGD 981

Query: 1032 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP-SELQEFQRRFHIGKAVTGHVLSIN 1090
             +  +V    N    LT++  +KA+L I D + E    ++  +  F +G  +  +V   +
Sbjct: 982  EIIAFVNNYQNSTLWLTVTPTIKAKLSIFDLSEETLMNIKNVEDDFPLGSVLKVNVTGKD 1041

Query: 1091 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE-GDIVGGRISKILSGVGGLVVQIGP 1149
            + K +L++  R  +          S D+++   H  G IV      +L  +   +  I  
Sbjct: 1042 QNKSILQVTQRNGKIN--------SIDDLKVGGHTIGKIVKVTPKYLLIELENKITGIST 1093

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
             L     FTE        PL        D +    E +FVK K   I+  +     V+L 
Sbjct: 1094 ALEALNDFTE--------PL--------DQVFAGKENEFVKAK---ITSVIADEKKVQLQ 1134

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
            L           + D ST V     H     DL    +V G VK VT KG F+ L + ++
Sbjct: 1135 L-----------AEDEST-VQKITSH----SDLKVGEVVNGLVKTVTDKGLFVFLGKSVE 1178

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1329
            A V +S LSD Y++  +K +   + V G+++S      R+ +TL+ ++        + N 
Sbjct: 1179 AFVPVSKLSDSYLKEWKKFYKPMQPVVGKIVSCNE-DDRILLTLRETEV-NGDLKVLKNY 1236

Query: 1330 SNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            S++  GDI  G ++ V  +G+F+ ++NT N+ GL H++E++++  ++I++I+  G++VK 
Sbjct: 1237 SDIKPGDIFNGTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPEDIQSIFGVGDRVKA 1296

Query: 1389 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQ 1448
             +LK + EK+++SL +K+S+F  +    + +  +     I+E                 Q
Sbjct: 1297 YVLKSNPEKKQLSLSLKASHFNTNETITEKAESQPQPRKIDED----------------Q 1340

Query: 1449 DMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP---------DMDNGISQNQGHTDEA 1499
            D  M+ E     V+   ES AS        DDE+            D G+S + G     
Sbjct: 1341 DELMDDE-----VVYNSESEAS--------DDEEAHSSKSTTVISNDGGLSLSAGFDWTT 1387

Query: 1500 KTIDEKNNRHAKKKEK----EEREQEIRAAEERLLEKD--------APRTPDEFERLVRS 1547
              +D+ N     + ++    E +  + +  + + L +D        AP +  +FERL+  
Sbjct: 1388 SILDQANASSDSESDEEDFMESKRSKNKKKKSKNLVEDKTIDINTRAPESVADFERLIIG 1447

Query: 1548 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1607
            +PNSS +W+ YMAF L +++++KAR +AERAL+TIN REE EKLNIW+A  NLEN +G+ 
Sbjct: 1448 NPNSSVIWMNYMAFQLQLSEIDKARELAERALKTINYREEAEKLNIWIAMLNLENTFGS- 1506

Query: 1608 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRR 1666
             EE +  VF R+ QY D   +H  L+G+Y+ +E+   A EL     KKF      +W+  
Sbjct: 1507 -EETLEDVFTRSCQYMDSFTMHSKLIGIYQLSEKFDKASELFKITTKKFGSEKTSIWVSW 1565

Query: 1667 VQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1725
               +L Q + + V  ++  AL SLP+  HI+ + + A LEF  G  +RGRS+FEG+L++ 
Sbjct: 1566 ASFVLSQNEPDQVGTILSSALKSLPKRNHIEVVRKFAQLEFSEGNPERGRSLFEGLLADA 1625

Query: 1726 PKRTDLWSIYLDQEIRLGD-VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1784
            PKR D+W++YLDQEI+  D    +  LFER I + +  K+ KF F K+L++E+S  +E+ 
Sbjct: 1626 PKRIDIWNVYLDQEIKQKDNKSRVEELFERVIKMKITRKQAKFFFNKWLQFEESNNDEKM 1685

Query: 1785 IEYVKQKAMEYVE 1797
             +YVK KA EYVE
Sbjct: 1686 TDYVKAKASEYVE 1698



 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 187/758 (24%), Positives = 337/758 (44%), Gaps = 92/758 (12%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL--------------DNEIEANE 45
           L G +  + + DL I    GL G   L   ++ L  +L              D E E+++
Sbjct: 114 LLGQIDSITKNDLRITFTDGLSGFVDLTHISEQLTSLLEDIDEDMDSDSKEDDAEYESSD 173

Query: 46  D----NLLPTI---FHVGQLVSCIVLQLDDDKKEIGKRK--IWLSLRLSLLYKGLSLETV 96
           D      LP +   F VGQ + C V +    K +  K+K  I L++  S++     +E +
Sbjct: 174 DESEQKSLPNLRHYFKVGQWLRCAVTKNTALKPKNAKQKKRIELTIEPSVV-NNFDVEDI 232

Query: 97  QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDR 155
            +  ++   V+SIEDHG  L  G+PS TGF+ + +       ++KPG + +  + +  DR
Sbjct: 233 NKNTIIQCSVESIEDHGATLDLGVPSLTGFIAKKDCTNFD--ELKPGSVFISCITKKTDR 290

Query: 156 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 215
           +   + +S D  +V K     +   SID ++PG +V    + I ++G++       +  +
Sbjct: 291 S---IVVSQDF-SVKKNKMTSIS--SIDSVLPGQVVDLLCEEITDSGIVGKVFGSISAFI 344

Query: 216 DIFHLQNTFPTTNWKNDYNQHKKVNARIL---FVDPTSRAVGLTLNPYLLHNRAPPSHVK 272
              HLQ TF   + K+ ++    +  RIL         R + L+  P+++        ++
Sbjct: 345 GKPHLQ-TFSEEDIKHKFSLGSNIPCRILASVINKSGDRVLILSTLPHVISLNNTLGSIE 403

Query: 273 ------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD-----VAEEEVRKLEK 321
                 +G I D+S V   D              S+  Y+ ISD     V +  + ++ K
Sbjct: 404 SLEAFPIGFIIDESVVKGRD--------------SSYLYLAISDKFIGRVHQSNLGEIIK 449

Query: 322 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGA 380
           + K    ++ R++G+   + +          +       D+  G V    +++   S G 
Sbjct: 450 QDK----LKSRVIGYDVADCIFELTTDPEKLKLKYIRSKDIPVGEVFNNCEILKASSSGV 505

Query: 381 IVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVKS 438
            ++  GG   A  P  H+S+  ++ P +KFK+ ++   R+L V +   I  T KK+LV  
Sbjct: 506 ELKLLGGQFTAFVPPLHISDIRLIYPERKFKIASKTKCRILNVDNHGHIIATMKKSLVND 565

Query: 439 K---LAILSSYAEA----TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 491
           +     ++ S+  A         T G +     HGC + F+ GV GF P+SE+       
Sbjct: 566 EELEKPVIESFETAKSIKNKNEKTVGTVQSFNGHGCVIMFFGGVTGFLPKSEVSEVFVKR 625

Query: 492 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLG-SLVSGVVDVV 546
                 +GQ V+ +++      RRI ++  +      +     + +K+G S++  VV   
Sbjct: 626 AEDHLRLGQTVQVKVLEVDEERRRIIVTCKVSNEEAQQQKSIIESLKIGQSIIETVVVEK 685

Query: 547 TPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESSNLL- 604
           T ++V+V +   G  +G I   H++D  +E        I+ G +   L++  +  + +  
Sbjct: 686 TKDSVIVEIPDVGI-RGVIYVGHISDERIEQCRAEIKKIRIGSKLTGLVIDKDSRTQIFN 744

Query: 605 LSAKYSLINSAQ--QLPSDASHI---HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
           LS K SL+  AQ  +LP+  + I        +HGYV +I  TG FV F G+  G    S 
Sbjct: 745 LSLKKSLMKDAQNKRLPTTFAEITKFKKTDPLHGYVKSISSTGVFVAFTGKFVGLVLPSY 804

Query: 660 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
           AV+ ++ D+ K +Y  QSV + +L  + +  R  L+LK
Sbjct: 805 AVESRQVDIEKAFYSNQSVTAYLLRTDDDNERFLLTLK 842



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 17/255 (6%)

Query: 455  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKCRIMSSIP 511
            T G I K+      +   N + G +   E  L+   EP      G   + VK +I S I 
Sbjct: 1068 TIGKIVKVTPKYLLIELENKITGISTALE-ALNDFTEPLDQVFAGKENEFVKAKITSVIA 1126

Query: 512  ASRRINLSFMMKPTRV----SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIP 566
              +++ L      + V    S  DL K+G +V+G+V  VT   + V++   G S +  +P
Sbjct: 1127 DEKKVQLQLAEDESTVQKITSHSDL-KVGEVVNGLVKTVTDKGLFVFL---GKSVEAFVP 1182

Query: 567  TEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 626
               L+D   +    K   KP       +V  NE   +LL+ + + +N   ++  + S I 
Sbjct: 1183 VSKLSD--SYLKEWKKFYKPMQPVVGKIVSCNEDDRILLTLRETEVNGDLKVLKNYSDIK 1240

Query: 627  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
            P  + +G V N+ + G FV+      +TG A  ++  D    D+   + VG  V++ +L 
Sbjct: 1241 PGDIFNGTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPEDIQSIFGVGDRVKAYVLK 1300

Query: 685  VNSETGRITLSLKQS 699
             N E  +++LSLK S
Sbjct: 1301 SNPEKKQLSLSLKAS 1315



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 3/168 (1%)

Query: 356  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
            + +HSD+K G VV G V  V   G  V     V+A  P+  +S+  + +  K +K    +
Sbjct: 1145 ITSHSDLKVGEVVNGLVKTVTDKGLFVFLGKSVEAFVPVSKLSDSYLKEWKKFYKPMQPV 1204

Query: 416  VFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 473
            V +++   +  RI +T ++T V   L +L +Y++     I +G +  +   G FV+  N 
Sbjct: 1205 VGKIVSCNEDDRILLTLRETEVNGDLKVLKNYSDIKPGDIFNGTVRNVTDFGVFVKLDNT 1264

Query: 474  -GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
              V G A  +E+  +   +  S++ VG  VK  ++ S P  ++++LS 
Sbjct: 1265 ANVTGLAHITEIADEVPEDIQSIFGVGDRVKAYVLKSNPEKKQLSLSL 1312



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 121/577 (20%), Positives = 230/577 (39%), Gaps = 81/577 (14%)

Query: 102  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRT 156
            L  YVKSI   G  + F    F G +  +   E+  +D++        +   ++R+ D  
Sbjct: 776  LHGYVKSISSTGVFVAF-TGKFVGLVLPSYAVESRQVDIEKAFYSNQSVTAYLLRTDDDN 834

Query: 157  RKVVYLSSDP------DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 210
             + +     P      +T+S     D    S+  +  G ++  +++ + +N + +     
Sbjct: 835  ERFLLTLKAPKVEKAAETISAENIIDTSIKSVKDIKLGKILDAKIKGVKKNQLNIILADN 894

Query: 211  FTGTVDIFHLQNTF--------PTTNWK------------NDYNQHKKVNARILFVDPTS 250
              G VDI  + + +        P +++K            +D   HK +     FV  T 
Sbjct: 895  VHGRVDISEVFDNYNDIKDKKHPLSHYKANDKVRVKIIGHHDLKSHKSLPITHNFVKGT- 953

Query: 251  RAVGLTLNPYLLHNRAPPSHVKVGDIYD----QSKVVRVDRGLGLLLDIPSTPVSTPAYV 306
                LT+ P  L ++     VK  DI D       +  V+      L +  TP +  A +
Sbjct: 954  -VFELTMKPSQLKSK----DVKELDIRDITVGDEIIAFVNNYQNSTLWLTVTP-TIKAKL 1007

Query: 307  TISDVAEE---EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 363
            +I D++EE    ++ +E  +  GS ++V + G    +     IL+ +   G + +  D+K
Sbjct: 1008 SIFDLSEETLMNIKNVEDDFPLGSVLKVNVTG----KDQNKSILQVTQRNGKINSIDDLK 1063

Query: 364  PGMVVKGKVIAVDSFGAIVQFPGGVKAL-CPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
             G    GK++ V     +++    +  +   L  +++F   +P  +   G E  F    V
Sbjct: 1064 VGGHTIGKIVKVTPKYLLIELENKITGISTALEALNDF--TEPLDQVFAGKENEF----V 1117

Query: 423  KSKRITVTHKKTLVKSKLA-------ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
            K+K  +V   +  V+ +LA        ++S+++     + +G +  +   G FV     V
Sbjct: 1118 KAKITSVIADEKKVQLQLAEDESTVQKITSHSDLKVGEVVNGLVKTVTDKGLFVFLGKSV 1177

Query: 476  QGFAPRSELGLDPGCEPSSMYH-----VGQVVKC----RIMSSIPASRRINLSFMMKPTR 526
            + F P S+L      E    Y      VG++V C    RI+ ++   R   ++  +K  +
Sbjct: 1178 EAFVPVSKLSDSYLKEWKKFYKPMQPVVGKIVSCNEDDRILLTL---RETEVNGDLKVLK 1234

Query: 527  VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
               D  +K G + +G V  VT   V V +       G      +AD +     ++S+   
Sbjct: 1235 NYSD--IKPGDIFNGTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPED--IQSIFGV 1290

Query: 587  GYEFDQLLVLDN-ESSNLLLSAKYSLINSAQQLPSDA 622
            G      ++  N E   L LS K S  N+ + +   A
Sbjct: 1291 GDRVKAYVLKSNPEKKQLSLSLKASHFNTNETITEKA 1327


>gi|194378984|dbj|BAG58043.1| unnamed protein product [Homo sapiens]
          Length = 1299

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 311/1077 (28%), Positives = 517/1077 (48%), Gaps = 101/1077 (9%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202  YLVDIGVDGARAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262  VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 494  EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
             +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613

Query: 523  -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                   +P+  S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614  CDPEPKKEPSGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
            + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673  VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 733  IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
            + LSL+ S C   D + +    LL + +  LQ      S  +   ++ +     G  ++ 
Sbjct: 793  MLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDL 851

Query: 747  KVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V +SL 
Sbjct: 852  VVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLH 911

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
               +        NR+A+K ++  E       HQ   AIV+ ++++  + SL E  H   +
Sbjct: 912  QDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSLAIASLVETGHLAAF 953

Query: 866  ASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-- 922
            +  S  N T +F  ++   GQ V  T+       T   L +   A   T   + K ++  
Sbjct: 954  SLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKGTMRPTQKDSETV 1013

Query: 923  ---------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
                           KK +  +G +V   +  IKP  + +    G  G IH + + DD  
Sbjct: 1014 DEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVP 1073

Query: 968  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML 1011
                   +  K+G+TVTAR+I      DM K+F +             ELS++PS L
Sbjct: 1074 EGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSEL 1125



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 150/337 (44%), Gaps = 57/337 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVL 461

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1314 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 118/512 (23%), Positives = 206/512 (40%), Gaps = 61/512 (11%)

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1002
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 432  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHL 485

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 486  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGL 543

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
               G I+  R+        G +V+   ++ G V   EL    + DP   +          
Sbjct: 544  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVF---------- 586

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            Y  GQ VK  VL    +        LS + S D       S         G   +K + +
Sbjct: 587  YT-GQVVKVVVLNCEPSKERML---LSFKLSCDPEPKKEPS---------GHSQKKGKAI 633

Query: 1243 SPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRV 1299
            +   +V   V   T  G  + +L   + A +  S+LSD     P        G ++  RV
Sbjct: 634  NIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RV 692

Query: 1300 LSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            L +     RV +  K +  S      +  N S +H G ++IG +K ++ YG+FI    + 
Sbjct: 693  LCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SG 751

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S       +L +
Sbjct: 752  LSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS--DCGLGDLAI 809

Query: 1419 SSEEESDEAIEEVGSYNRSSLLENSSVAVQDM 1450
            +S    ++ +EE+    RS +    SV +Q +
Sbjct: 810  TSLLLLNQCLEELQGV-RSLMSNRDSVLIQTL 840


>gi|310789617|gb|EFQ25150.1| S1 RNA binding domain-containing protein [Glomerella graminicola
            M1.001]
          Length = 1772

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 367/1397 (26%), Positives = 646/1397 (46%), Gaps = 183/1397 (13%)

Query: 474  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK----PTR 526
            G+ GF   S +    +D   E S  Y VG   + R++          LSF  +    P  
Sbjct: 467  GISGFVHISRVKDGKVDALYETSGPYKVGSEHRGRVVGYNSLDGMFLLSFQQQVLDQPFI 526

Query: 527  VSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 581
              ED  V +G +VSG V+  ++  N V  ++  +A+G S G +   HLAD  L+H    +
Sbjct: 527  RLED--VPVGEVVSGKVEKVIIGENGVSGLIVKLAEGIS-GYVHDSHLADVKLQHP---E 580

Query: 582  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 640
               + G     ++L +      L L+ K +L+NS   +  +   +       G + +   
Sbjct: 581  KKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIVKNYDEVEVGMQTPGTITSFTA 640

Query: 641  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
             G  + F G + GF P S+  +    D  + + +GQ+V  ++LDVN E  R+ +S K   
Sbjct: 641  GGAQLEFFGGIRGFLPVSQMSEAYIKDPREHFRIGQAVSVHVLDVNPEERRMVVSCKDPS 700

Query: 701  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
                        F L+++ A+              +   +G ++  KV +  +  V V  
Sbjct: 701  A-----------FGLDKQAAL--------------KALKVGDIVSAKVSQKTEDEVFVDL 735

Query: 761  EEHSDVYGFITHH---------QLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFID 810
            EE        T H         Q A   +  G+ + +  +LD  +  R V LS K  F+ 
Sbjct: 736  EESGLKAIIRTGHLSDKSASKTQAAWKRINVGNTLSELVVLDKNERRRAVILSQKPSFV- 794

Query: 811  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 870
                     +A K  +    ++D  V     A V  +    + +       +I   +   
Sbjct: 795  ---------EAGKNGKLLSNAEDATVGTVAPAYVREIGPYAVYVQFGGSLTAILPKTKLP 845

Query: 871  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA--------K 922
             + Q+         QS+   +++  S     R+++   +  E E  +++ A        K
Sbjct: 846  KDAQEKEAFGMRKHQSIEVKIVS--SKPEQNRIIVAPASADEPEPVAAESAVNSVDDSIK 903

Query: 923  KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLFSNFKIG 980
              +   +G+++ A++T +K  +L +K      GRI +++  D   ++   +N     K  
Sbjct: 904  TINDVALGTILNAKVTSVKDTQLNVKVADNIQGRIDVSQFYDKWDDITNRKNPLQKVKAN 963

Query: 981  QTVTARIIAKSNKPDMK--------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQR 1032
            + +  R I   +  + +           L E + K S L   E+    L     + +G  
Sbjct: 964  EIIRVRAIGIHDSKNYRFLPFSHRSSHSLIEFTAKKSDLEAKEVE---LLSYDKIEVGSS 1020

Query: 1033 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1092
               +V         + +S  ++ ++ I+D + + S     ++ F +G A+   VLS++ E
Sbjct: 1021 HVAFVNNHGKNCLWVNLSPSVRGRISIMDVSDDLSLAGNLEKHFPVGSALKVRVLSVDAE 1080

Query: 1093 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1152
            K  L L  R      S  + +++ D+++  +     + GR++K+      ++V++G  + 
Sbjct: 1081 KGHLDLSSRS-----STGSTEVTWDSLKKNV----ALPGRVTKVTDR--SVMVKLGDSVS 1129

Query: 1153 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1212
            G VH  +L +         YDE        Y++G+ ++  V+E+ ++ +    + LS R 
Sbjct: 1130 GPVHLVDLSD--------NYDEAN---TLKYNKGEIIRVSVVEVDKSNK---RLRLSTRP 1175

Query: 1213 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1272
            S   +SST     S  VD   + + K+  +S   I++G+VKNVT KG F+ L   + A V
Sbjct: 1176 SRI-LSST-----SPVVD---REITKLSQISSGDIIRGFVKNVTDKGVFVQLGGTVSALV 1226

Query: 1273 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1332
             +SNLSD Y++  +  F + +LV GRV++V+    +VE++LK S         +    ++
Sbjct: 1227 KISNLSDRYIKDWKGNFQVDQLVKGRVINVDAAINQVELSLKASVVENDYTPPVT-YKDM 1285

Query: 1333 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1391
              G IV G++++VE +G FI ++N+ N+ GLCH SE++E  V++   +Y  G+ VK K+L
Sbjct: 1286 KEGQIVTGKVRKVEEFGAFIVVDNSLNVSGLCHRSEMAEKPVEDARRLYSEGDVVKAKVL 1345

Query: 1392 KVDKEKRRISLGMKSSYFKNDAD--NLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1449
             VD EKRRI+  ++ S+F  D+D  ++   +E +SDE                      D
Sbjct: 1346 SVDDEKRRITFSLRPSHFDEDSDMEDVNGGAELDSDE----------------------D 1383

Query: 1450 MDMESEDGG-SLVLAQIES---------RASVPPLEVNLDDEQPDMDNGISQNQGHTD-E 1498
             D+E  DGG  L ++  ++          A     + + + ++ D   G   + G  D  
Sbjct: 1384 SDIEMGDGGVQLTISGTDNIDDSDEEDESAEEDEDDSDAEMDEVDTATGKGLSGGKYDWT 1443

Query: 1499 AKTIDEKNNRHAKKKEKEERE-----------QEIRAAEERLLEKDAPRTPDEFERLVRS 1547
                D++++  +  K K+ +            Q  R A+   L+   P+T  ++ERL+  
Sbjct: 1444 GDAFDDESDNESTGKSKKSKATGKKEKKKSGIQVDRTAD---LDAHGPQTATDYERLLLG 1500

Query: 1548 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1607
             P+SS +WI+YMA  + ++++ KAR +AERA++TINIRE+ EKLN+W+AY NLE  YG  
Sbjct: 1501 EPDSSQLWIEYMALQMKISELAKAREVAERAIKTINIREQTEKLNVWIAYLNLEVAYGT- 1559

Query: 1608 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRR 1666
             + +  +VF+RA QY D ++VH  L  +Y +  + K AD++   ++ KFK  S KVW   
Sbjct: 1560 -KASTEEVFKRACQYNDEQEVHERLASIYIQCGKLKQADDVFQSLVAKFKSKSPKVWENY 1618

Query: 1667 VQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGIL 1722
               L     + +  +A++ RA  +L      + ++    LEFK  NG A+RGR+ FE IL
Sbjct: 1619 AHFLHVTMNEPDRARALLPRATQALEERHTAQLMASFGALEFKSPNGDAERGRTTFETIL 1678

Query: 1723 SEYPKRTDLWSIYLDQEIRLGDVDL--IRGLFERAI-SLSLPPKKMKFLFKKYLEYEKSV 1779
            + +PKR DLW+   D EI   + D   IR +FER   +  L PKK    FK++ E+E+ +
Sbjct: 1679 ATWPKRFDLWNQLADLEISAAEPDTTAIRDVFERGTKAKGLKPKKAMKWFKRWAEWEQKL 1738

Query: 1780 GEEERIEYVKQKAMEYV 1796
              + R + V  KA E+V
Sbjct: 1739 SPKGR-DKVMAKAQEWV 1754



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 295/1281 (23%), Positives = 546/1281 (42%), Gaps = 135/1281 (10%)

Query: 5    GVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL------------L 49
            G +  ++   L + LP  L G   +A  +D ++  L+ +++A ++              L
Sbjct: 144  GQITHIDSVQLTVALPNNLTGHVSIASISDTINSKLEKDVDAADEESDDDDGDDDEEIDL 203

Query: 50   PTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
             T+F VGQ V   VL   ++      KR+I LSLR +    G++ + +     L A + S
Sbjct: 204  QTMFKVGQYVRAHVLSTAEESGSGKAKRRIELSLRPADANSGITGDDIVAYTTLMASIAS 263

Query: 109  IEDHGYILHFGLPS-FTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 166
            ++DHGY +  G+     GFL +  +  +     ++PG +   VV+S+  T  VV LS+DP
Sbjct: 264  VQDHGYEMDLGIDGDLKGFLAKKEVGPDMDEASLRPGAVCLCVVKSV--TGIVVQLSTDP 321

Query: 167  DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 226
              +           +I+  +PG +    +  +   G+    L +   T D+ H       
Sbjct: 322  LKLGNTSLVASTAPTINSFLPGSLADVLLTEVTSRGLQGKLLGHLPVTADLIHSGVGPDG 381

Query: 227  TNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLH-----------NRAPPSHVKV 273
             + +  Y    +V ARI+   P +R   +G++L P++++            +AP   + +
Sbjct: 382  VDLEAKYTVGSRVKARIICNFPAAREPKLGISLLPHIVNLQPKSSGKGSRAKAPLDLLPI 441

Query: 274  GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVR 330
                ++  V +V+  +GL +D     +S   +V IS V + +V  L +    YK GS  R
Sbjct: 442  ASFVEKCTVRKVEPEIGLYVDAGVPGIS--GFVHISRVKDGKVDALYETSGPYKVGSEHR 499

Query: 331  VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGAIVQFP 385
             R++G+  L+G+     +    +       DV  G VV GKV  V        G IV+  
Sbjct: 500  GRVVGYNSLDGMFLLSFQQQVLDQPFIRLEDVPVGEVVSGKVEKVIIGENGVSGLIVKLA 559

Query: 386  GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAIL 443
             G+       H+++ ++  P KKF+ G  +  RVL V+ ++  + +T KKTLV S   I+
Sbjct: 560  EGISGYVHDSHLADVKLQHPEKKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIV 619

Query: 444  SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 503
             +Y E    + T G IT     G  + F+ G++GF P S++      +P   + +GQ V 
Sbjct: 620  KNYDEVEVGMQTPGTITSFTAGGAQLEFFGGIRGFLPVSQMSEAYIKDPREHFRIGQAVS 679

Query: 504  CRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
              ++   P  RR+ +S    P+    D       +K+G +VS  V   T + V V +   
Sbjct: 680  VHVLDVNPEERRMVVS-CKDPSAFGLDKQAALKALKVGDIVSAKVSQKTEDEVFVDLEES 738

Query: 559  GYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLINSA 615
            G  K  I T HL+D     T      I  G    +L+VLD NE    ++LS K S + + 
Sbjct: 739  GL-KAIIRTGHLSDKSASKTQAAWKRINVGNTLSELVVLDKNERRRAVILSQKPSFVEAG 797

Query: 616  Q--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 673
            +  +L S+A      +V   YV  I     +V+F G LT   P++K     +   +    
Sbjct: 798  KNGKLLSNAEDATVGTVAPAYVREIGPYAVYVQFGGSLTAILPKTKLPKDAQEKEAFGMR 857

Query: 674  VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 733
              QS+   I+    E  RI ++      +S D           E +A   +       +K
Sbjct: 858  KHQSIEVKIVSSKPEQNRIIVA-----PASADEP---------EPVAAESAVNSVDDSIK 903

Query: 734  WVEGFIIGSVIEGKVHESNDFGVVVSFEEH----------SDVYGFITHHQLAGATVESG 783
             +    +G+++  KV    D  + V   ++           D +  IT+ +     V++ 
Sbjct: 904  TINDVALGTILNAKVTSVKDTQLNVKVADNIQGRIDVSQFYDKWDDITNRKNPLQKVKAN 963

Query: 784  SVIQAAILDV--AKAERLVDLSLKTVF-IDRFREANSNRQAQKKKRKREASKDLGVHQTV 840
             +I+   + +  +K  R +  S ++   +  F    S+ +A++ +       ++G     
Sbjct: 964  EIIRVRAIGIHDSKNYRFLPFSHRSSHSLIEFTAKKSDLEAKEVELLSYDKIEVGSSHV- 1022

Query: 841  NAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSS 898
             A V    +N L ++L P     I    VS D +     +K F  G ++   V+++   +
Sbjct: 1023 -AFVNNHGKNCLWVNLSPSVRGRISIMDVSDDLSLAGNLEKHFPVGSALKVRVLSV--DA 1079

Query: 899  TAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 958
              G L L  ++ + +   +    KK  +      +   +T++    + +K G    G +H
Sbjct: 1080 EKGHLDLSSRSSTGSTEVTWDSLKKNVA------LPGRVTKVTDRSVMVKLGDSVSGPVH 1133

Query: 959  ITEVND--DKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSML--T 1012
            + +++D  D++N ++     +  G+ +   ++   KSNK          LS +PS +  +
Sbjct: 1134 LVDLSDNYDEANTLK-----YNKGEIIRVSVVEVDKSNK-------RLRLSTRPSRILSS 1181

Query: 1013 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1072
             S +  + + +   +S G  + G+V  V ++   + +   + A + I  S      ++++
Sbjct: 1182 TSPVVDREITKLSQISSGDIIRGFVKNVTDKGVFVQLGGTVSALVKI--SNLSDRYIKDW 1239

Query: 1073 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1132
            +  F + + V G V++++     + L L+      +D T  ++  +M+    EG IV G+
Sbjct: 1240 KGNFQVDQLVKGRVINVDAAINQVELSLKASVVE-NDYTPPVTYKDMK----EGQIVTGK 1294

Query: 1133 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1192
            + K+      +VV    ++ G  H +E+    V            D    Y EG  VK K
Sbjct: 1295 VRKVEEFGAFIVVDNSLNVSGLCHRSEMAEKPVE-----------DARRLYSEGDVVKAK 1343

Query: 1193 VLEISRTVRGTFHVELSLRSS 1213
            VL +    R    +  SLR S
Sbjct: 1344 VLSVDDEKR---RITFSLRPS 1361


>gi|409051813|gb|EKM61289.1| hypothetical protein PHACADRAFT_168722 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1480

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 347/1233 (28%), Positives = 597/1233 (48%), Gaps = 153/1233 (12%)

Query: 620  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
            S+ + + P S+V   + ++  TG  ++ LG   G   +     G   D+ + + VGQ V+
Sbjct: 339  SNTTSVVPGSLVSALITSVQPTGLNLQVLGFYNGTIDQFHLPPG---DVEENFKVGQKVK 395

Query: 680  SNIL-DVNSET-GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 737
            + IL D+   T  R  LSL     S TD S       ++      Q+S H        E 
Sbjct: 396  ARILYDIAPSTPSRFALSLADHVVSMTDKS-------VDVSEDAKQTSLH--------EA 440

Query: 738  FIIGSVIEGK--VHESNDFGVVVSFEEHSDVYGFITHHQLAGATV----------ESGSV 785
            F IG  ++    +    + G++V  E    V GF+   Q++   V          + G++
Sbjct: 441  FTIGVPVDPMKVIRVEPERGLIV--EVTPTVEGFVHISQVSDEHVPMLSASSGPWKVGTM 498

Query: 786  IQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 844
             +A +      + L+ LS+K +V   +F +                  ++ V + +   V
Sbjct: 499  HRARVTGYHPFDGLLQLSMKPSVLEQKFLQVG----------------EVKVGEVIKGTV 542

Query: 845  EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLL 904
            + + ++ L +S+      + + +       K PQK+F  G S+   ++ +       R  
Sbjct: 543  KKLTDSALFVSISGNVDGVIWPNHYADIHLKHPQKRFKPGGSIKCRILVVDPE----RKR 598

Query: 905  LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
            ++L A      SS            G +  A + ++    L+++F       + I E ++
Sbjct: 599  VVLTAKKTLIDSSLPIVASLDDVKEGLVTHAVVFKVSEKSLQVEFYNNLKAIVPIREASE 658

Query: 965  DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS--IKPSMLTVSEIGSKLLF 1022
                 + +L + F +G+ V  RII+ + +     S + + S   K ++  +         
Sbjct: 659  ---TTISSLSAAFPLGKVVQVRIISCNAETGRIVSSIRQASANFKAAITAIQ-------- 707

Query: 1023 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR--FHIGK 1080
               DV IG  V G V ++  E A++T+       L  L++      +   Q R    +G 
Sbjct: 708  ---DVEIGHSVEGVVSEIQKEKAIVTLKPTQVRALLSLNNLANRRGIAVAQLRSSLKVGD 764

Query: 1081 AVTGHVL-SINKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1138
             +   V+ S N EK  + +  +P + + +  K+  I        +  G IVGGR+ + + 
Sbjct: 765  KLMDLVVTSRNPEKGFVLVATKPKEKEEVLQKSALILES-----VQIGQIVGGRVIRHIR 819

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ-FDPLSGYDEGQFVKCKVLEIS 1197
               G +V++   + G +H T+     VSD    Y+ G  F P+         K  V+ I 
Sbjct: 820  A--GALVKLTSRISGILHPTD-----VSD---DYESGTPFPPVD-----TVFKAAVIGID 864

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1257
               R    + LS R S+         + S  V      +  + D+     V+G++K+V  
Sbjct: 865  TDKRT---LTLSTRRSV--------MNPSVHVPVADPVINDVSDMKAGSTVRGFIKSVAE 913

Query: 1258 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
             G F+ L R +DA+V +  L D +V+  +  F   +LV GR+LSV    K+VE++ ++SD
Sbjct: 914  HGLFVTLGRNIDARVQIKELFDDFVKDWKSRFQANQLVKGRILSVNVEKKQVEMSFRSSD 973

Query: 1318 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
            S  ++Q  I  LS+L  G  V   +K++  YGLF+ +E + + GLCH SELS++   ++ 
Sbjct: 974  SSRSAQLTIK-LSDLSEGQKVDAVVKKIADYGLFLEVEGSKVRGLCHKSELSDNPAADVT 1032

Query: 1378 TI---YRAGEKVKVKILKVDKEKRRISLGMKSSYF------------KNDADNLQMSSEE 1422
                 +R  +KVK  +L VD EKRRIS G+K SYF              + ++L +  EE
Sbjct: 1033 MALRSFRESDKVKAVVLTVDSEKRRISFGLKPSYFVEEDFQEAESESGAEQESLGVIDEE 1092

Query: 1423 ESDEAIEEVGSYNRSSLLENSSVAVQD-------MDMESEDGGSLVLAQIESRASVPPLE 1475
               E +E +G+          +V  ++       MD++ +  GSLV A+  S+ +  P  
Sbjct: 1093 SDREHVEGIGNEGSDEEKNKETVNAEEVVDEDETMDVDVDVSGSLV-ARKGSQTNAGPSA 1151

Query: 1476 V----NLDDE------QPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAA 1525
            +     LDD       Q D+D  +      + E ++ DE      +K++ +E EQ++ A 
Sbjct: 1152 IRSVLKLDDGFQWSTVQQDVDVEM-----ESSEKESGDEDQPSKKRKRKHKEIEQDLTAD 1206

Query: 1526 EERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1585
                L+   P +  +FER++  SPNSS++WI+YM+F + +++++KAR IA+R+L+TIN R
Sbjct: 1207 ----LQTKTPESNADFERILLGSPNSSYLWIQYMSFQIQLSEIDKAREIAQRSLKTINFR 1262

Query: 1586 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1645
            EE EKLN+WVA  NLEN YG   EE++   F+ A ++ D K VHL +  ++E++E+ + A
Sbjct: 1263 EEREKLNVWVALLNLENVYGT--EESLEVTFKDAARHNDSKTVHLRMAAIFEQSEKIEKA 1320

Query: 1646 DELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAIL 1704
            +E   +  KKF HS KVW    +  L++ + E  +A++ R+L SL + KH+K IS+ A L
Sbjct: 1321 EEQHRRTAKKFGHSSKVWTLFAEHYLRRGKLEDARALLPRSLQSLEKQKHLKTISKFAQL 1380

Query: 1705 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1764
            E+K G  +RG+++FEG++  +PKR D+WSIY+D E   GD+  +R LF+R ++  +   K
Sbjct: 1381 EYKLGDPERGKTIFEGVMESHPKRWDIWSIYIDMEAGQGDIMNLRNLFDRVLAQKMTSHK 1440

Query: 1765 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
             K  FKK+LE E+ +G+EE    VK KA+E+ +
Sbjct: 1441 AKSFFKKWLELERRIGDEEGAGIVKAKAIEWTQ 1473



 Score =  180 bits (457), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 195/784 (24%), Positives = 341/784 (43%), Gaps = 108/784 (13%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG-------LARAADALDPILDNEIEANEDNL----- 48
           MK++G V  V    L++ LP  L          ++    L+ + D E E   D       
Sbjct: 127 MKIFGQVMSVEPLALIVSLPNQLLAHIPITNITSQLTSLLESMDDEEPEDVSDESDEEGP 186

Query: 49  --------LPTIFHVGQLVSCIVLQLDD-------------DKKEIGKRKIWLSLRLSLL 87
                   L  IF  GQ V  +V  +               D+ +   R++ LSL    +
Sbjct: 187 SMRRQVPELSEIFRPGQYVRAVVTAVHTAGSTDTVGFSRTRDESQKASRRVELSLFPDKV 246

Query: 88  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-----RNNLAENSGIDVKP 142
            +G++   V+ G   +A VKS+EDHGYIL  G+    GFL      R+ + E   + +  
Sbjct: 247 NEGVAKADVKAGFACSAAVKSVEDHGYILDMGISDILGFLTFKDAQRSRVGE---MRLSI 303

Query: 143 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
           G LL   V  +    +   +S  P+ V      ++   +   +VPG +VS  + S+   G
Sbjct: 304 GHLLDVCVTKLSSNGRTCNVSISPEFVRSTSLTEVSNTT--SVVPGSLVSALITSVQPTG 361

Query: 203 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDPTSRA-VGLTLNPY 260
           + L  L ++ GT+D FHL    P  + + ++   +KV ARIL+ + P++ +   L+L  +
Sbjct: 362 LNLQVLGFYNGTIDQFHL----PPGDVEENFKVGQKVKARILYDIAPSTPSRFALSLADH 417

Query: 261 LLHNRAPPSHVK-------------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT 307
           ++        V              +G   D  KV+RV+   GL++++  TP +   +V 
Sbjct: 418 VVSMTDKSVDVSEDAKQTSLHEAFTIGVPVDPMKVIRVEPERGLIVEV--TP-TVEGFVH 474

Query: 308 ISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
           IS V++E V  L      +K G+  R R+ G+   +GL    +K S  E       +VK 
Sbjct: 475 ISQVSDEHVPMLSASSGPWKVGTMHRARVTGYHPFDGLLQLSMKPSVLEQKFLQVGEVKV 534

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
           G V+KG V  +      V   G V  +    H ++  +  P K+FK G  +  R+L V  
Sbjct: 535 GEVIKGTVKKLTDSALFVSISGNVDGVIWPNHYADIHLKHPQKRFKPGGSIKCRILVVDP 594

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           + KR+ +T KKTL+ S L I++S  +  + L+TH  + K+ +    V FYN ++   P  
Sbjct: 595 ERKRVVLTAKKTLIDSSLPIVASLDDVKEGLVTHAVVFKVSEKSLQVEFYNNLKAIVPIR 654

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSS-------IPASRRINLSFMMKPTRVSEDDLVKL 535
           E         S+ + +G+VV+ RI+S        + + R+ + +F    T + +   V++
Sbjct: 655 EASETTISSLSAAFPLGKVVQVRIISCNAETGRIVSSIRQASANFKAAITAIQD---VEI 711

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLL 594
           G  V GVV  +     +V  +     +  +   +LA+    A   ++S +K G +   L+
Sbjct: 712 GHSVEGVVSEIQKEKAIV-TLKPTQVRALLSLNNLANRRGIAVAQLRSSLKVGDKLMDLV 770

Query: 595 VL--DNESSNLLLSAKYS-----LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
           V   + E   +L++ K       L  SA  L S    +    +V G V   I  G  V+ 
Sbjct: 771 VTSRNPEKGFVLVATKPKEKEEVLQKSALILES----VQIGQIVGGRVIRHIRAGALVKL 826

Query: 648 LGRLTGFAPRSKAVDGQRADLSKTYYVGQS-------VRSNILDVNSETGRITLSLKQSC 700
             R++G             D+S  Y  G          ++ ++ ++++   +TLS ++S 
Sbjct: 827 TSRISGIL--------HPTDVSDDYESGTPFPPVDTVFKAAVIGIDTDKRTLTLSTRRSV 878

Query: 701 CSST 704
            + +
Sbjct: 879 MNPS 882


>gi|156378172|ref|XP_001631018.1| predicted protein [Nematostella vectensis]
 gi|156218050|gb|EDO38955.1| predicted protein [Nematostella vectensis]
          Length = 1771

 Score =  375 bits (964), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 416/1578 (26%), Positives = 705/1578 (44%), Gaps = 240/1578 (15%)

Query: 360  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG--KKFKVGAELVF 417
            S + PGM+V  +V    S G IV F    +    + H+ E         K +K  ++ V 
Sbjct: 296  SSLLPGMLVNTRVSQCTSSGVIVSFLELFEGSVHILHLPENGGSGENLEKLYKKKSKHVA 355

Query: 418  RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNG 474
            R+L V  K+K ++++   ++++ KL    S +     +  +  IT+ ++  G      +G
Sbjct: 356  RILYVNPKNKVVSLSMLDSIIQFKLPSFESCS--IGDIFDNVTITRGDQGLGLLANVKDG 413

Query: 475  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI--MSSIPA--SRRINLSFMMKPTRVSED 530
            + GF   S++      +    Y  G   KCR+  M++I    S     S + KP    ED
Sbjct: 414  LNGFVHFSQVSDKQIEKLGKKYKAGTSHKCRVLGMNTIDGLLSLTTKKSIINKPFMRYED 473

Query: 531  DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKP 586
              +K GS+V G +  +T     + V    + KG +   HLAD    H E       V+K 
Sbjct: 474  --IKPGSIVEGTI--ITLEKFGMLVSVSDHIKGLVTNMHLADIILKHPEKKLTEGKVVKC 529

Query: 587  GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
                 ++L +D     L L+ K ++++S  Q+ +  S   P +  HG++ ++ E GC V 
Sbjct: 530  -----RVLTVDPGQRRLHLTHKKTMVSSTLQVITQYSDAKPGTTSHGFITSVREYGCLVT 584

Query: 647  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC--SST 704
            F   + G  P+ +    +  D    +Y+GQ +  +++  N +  ++ LSLK +    SST
Sbjct: 585  FYNNVKGLVPKDQLGIQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSLKANSANKSST 644

Query: 705  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 764
              S       L+   A  ++   N S++K       G V+ G V     +GV V F    
Sbjct: 645  QVSLQTASTSLKNA-AESKTMVTNFSDIK------PGMVLPGFVKLLMGYGVFVEFA--P 695

Query: 765  DVYG-----FITHHQLAGAT--VESGSVIQAAILDVAKAERLVDLSLKTVFID---RFRE 814
             + G     FI +H ++ A    + G  + A + +V    +   +SLK   ++    +  
Sbjct: 696  GILGLAPNSFIANHFVSDAASHFKIGQTLVAQVNEVDAERQRFLVSLKQSDLNPGSDWTS 755

Query: 815  ANSNRQAQKKKRKRE------ASK--------DLGVHQTVNAIVEIVKENYLVLSLPEYN 860
            A +    ++   +R+      ASK         L V   +   V  VK+N + L+LP+  
Sbjct: 756  ATAGALLEEILSERKHILDELASKTEDVKNLLSLPVGSCIEGKVSKVKKNGISLTLPD-- 813

Query: 861  HSIGYASVSDYNTQKFPQK-QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 919
                   +  +   +  Q    L G+ V   V+ L    +   L LL   +   +   +K
Sbjct: 814  ------GLKGFVFHQLAQGVSCLEGEVVQGCVLDLDVKKSVVELTLLPDVVKGRQNQKNK 867

Query: 920  RAKKKSSYDVGSLVQAEITEIKPLELRL-KFGIGFH-GRIHITEVNDDKSNVVENLFSNF 977
              + K    V  +VQ    E   + L    F IG+   ++H+ ++ D        +   F
Sbjct: 868  PKQMKPGQPVDFIVQLIKAEYMVVVLPCAAFKIGYAPAKMHLNDIRD--------VAKRF 919

Query: 978  KIGQTVTARIIAKSNK----PDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQR 1032
             +GQ     I+  S+      + + S   + ++KP  +T  E+ S K L  + +V +GQ 
Sbjct: 920  NVGQKYRGSILESSSHCIVVSECQNS--SKENLKPGTVTSVEVRSIKPL--QMNVQLGQ- 974

Query: 1033 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--N 1090
            + G V+ V N              L   +S ++P         F +G+ +   +L     
Sbjct: 975  IHGRVH-VSNA----------ADDLIQGESPFKP---------FQMGQKIQAKILGFRDT 1014

Query: 1091 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS-------KILSGVGGL 1143
            K    L L  R F   +++ ++  S   M +     ++VG           KI   V   
Sbjct: 1015 KTHNFLPLTHRNFTRAVAELSLKPS---MVSKTSASEVVGAVYDEKKIEDFKIGDEVQAF 1071

Query: 1144 V---------VQIGPHLYGRVHFTELKN-ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            V         + I   + GRV      N + V   LS      F P +G+       C V
Sbjct: 1072 VKSTSDNCIWMAINTLVSGRVELLHASNDVKVLRHLS----SAFKPGNGH------TCTV 1121

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            L++ +      H  L+L      ++    S LS D   PG+                  +
Sbjct: 1122 LDVDKD-----HEVLNL-----SLTVKPDSQLSRDQIVPGR----------------VTR 1155

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV------AGRV-------- 1299
             + + G FI L       V L++++D + E+P   + + ++V      A R         
Sbjct: 1156 VMPTSGLFIQLPLHKSGLVALTDIADHFTENPTDGYKVKQIVRWLQSQADRTNPTDGYKV 1215

Query: 1300 ------------------LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ 1341
                              LS+ P S+  E T +    ++ +  EI +L+ L VGDIV G 
Sbjct: 1216 KQIVRCCILSKKDNGHYDLSLRP-SRTTEATTQEEKDKSRTDREIGSLAALDVGDIVRGY 1274

Query: 1342 IKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1401
            +    + G+F+++   N+     +  LS  +V   + ++  G+ V  K+L ++    +I 
Sbjct: 1275 VSCATNIGVFVSL-GRNIKARVQIKNLSHFYVKEWKPLFPVGKLVTGKVLSINPTNGQIE 1333

Query: 1402 LGMKSSYF--KNDADNLQMS--------------------SEEESDEAIEEVGSYNRSSL 1439
            L +K       + A N + +                    +E ESDE +E +    R+  
Sbjct: 1334 LSLKGRDVGGPDPAPNPKQTEETGKKRKKATKVKTVDAGEAEPESDEDVEAIVKRLRADE 1393

Query: 1440 LENSS------VAVQDMDMESEDGGSLVLAQIE--SRASVPP-----LEVNLDDEQPDMD 1486
             ++         + +    E EDG     +QI+   R  V        +   D  + ++D
Sbjct: 1394 SDDEQGPHESEESEECNSSEPEDGDESTASQIKKIKRIQVSAGFNWSGDTEEDLGEANVD 1453

Query: 1487 NGISQ-NQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERL 1544
            N   + N    +  + +  K  +  K+  K+  E  +   E+ LL+ D  P   ++F+RL
Sbjct: 1454 NSSDEKNDSENESIEQVSRKKTKRQKRAAKKAEEDFLYRTEQALLDTDHTPECAEDFDRL 1513

Query: 1545 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1604
            V SSPN+S  W++YMAF L   +++KAR++AERAL+TI+ REE EKLNIWVA  NLEN Y
Sbjct: 1514 VLSSPNNSVTWLQYMAFHLHTTEIDKARAVAERALRTISFREEREKLNIWVALMNLENLY 1573

Query: 1605 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1664
            G   +E+++KVF+RALQ+ +PKKV   L+ +Y ++E+ +LA++L + M K+F  S KVW+
Sbjct: 1574 GT--QESLIKVFERALQHNEPKKVFFHLITIYTQSEKTELAEKLFHTMTKRFSQSKKVWI 1631

Query: 1665 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1723
               +  +K  + +  + ++QR L SLP  KH++ I Q A++EFKNG   RG+++ E +LS
Sbjct: 1632 EFGRFFMKTGKPDSARKLLQRGLKSLPTRKHVETIVQFALMEFKNGDPQRGQTVLESVLS 1691

Query: 1724 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1783
             YPKRTD+WS+Y+D   + G  D +R +FER I ++L  +KMKFLFKKYL++E+  G+E 
Sbjct: 1692 NYPKRTDIWSVYIDMMSKQGHPDTVRQIFERVIHMNLSSRKMKFLFKKYLDFEREHGDEM 1751

Query: 1784 RIEYVKQKAMEYVESTLA 1801
             +E VK KAMEYVES +A
Sbjct: 1752 SVEAVKTKAMEYVESKVA 1769



 Score =  303 bits (776), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 182/532 (34%), Positives = 295/532 (55%), Gaps = 25/532 (4%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADA----LDPILDNEIEANEDNLLPTI---F 53
           MKL G V EV E +L+I LP GL G     D     +  +  +  E   ++ +P++   F
Sbjct: 116 MKLLGAVKEVGEFELIISLPNGLSGFVHILDINEKLMSALAKSSTEERIEDSIPSLGDLF 175

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
            V  LV C+V +L   K   G RK+ LSLR   +  G++   +  G VL   V S+EDHG
Sbjct: 176 TVNSLVVCVVKELLSSKH--GHRKVKLSLRPEDVNAGVT--NIVPGFVLPGCVSSVEDHG 231

Query: 114 YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV-SKC 172
           Y+L FG+P  TGFL +    + +G  +  G  L  +V S D T +V+ +S D D + S  
Sbjct: 232 YVLSFGIPGKTGFLSK----KKTGRVLVEGQYLNTIVESAD-TGRVIRVSVDQDKIKSAM 286

Query: 173 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL-QNTFPTTNWKN 231
           ++ D+K +    L+PGM+V+TRV     +GV++SFL  F G+V I HL +N     N + 
Sbjct: 287 ISSDMK-VRFSSLLPGMLVNTRVSQCTSSGVIVSFLELFEGSVHILHLPENGGSGENLEK 345

Query: 232 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLG 290
            Y +  K  ARIL+V+P ++ V L++   ++  + P      +GDI+D   + R D+GLG
Sbjct: 346 LYKKKSKHVARILYVNPKNKVVSLSMLDSIIQFKLPSFESCSIGDIFDNVTITRGDQGLG 405

Query: 291 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
           LL ++         +V  S V+++++ KL KKYK G+  + R+LG   ++GL +   K S
Sbjct: 406 LLANVKD---GLNGFVHFSQVSDKQIEKLGKKYKAGTSHKCRVLGMNTIDGLLSLTTKKS 462

Query: 351 AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 410
                   + D+KPG +V+G +I ++ FG +V     +K L    H+++  +  P KK  
Sbjct: 463 IINKPFMRYEDIKPGSIVEGTIITLEKFGMLVSVSDHIKGLVTNMHLADIILKHPEKKLT 522

Query: 411 VGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 468
            G  +  RVL V    +R+ +THKKT+V S L +++ Y++A     +HG+IT + ++GC 
Sbjct: 523 EGKVVKCRVLTVDPGQRRLHLTHKKTMVSSTLQVITQYSDAKPGTTSHGFITSVREYGCL 582

Query: 469 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           V FYN V+G  P+ +LG+    +P  ++++GQV+ C ++S  P  +++ LS 
Sbjct: 583 VTFYNNVKGLVPKDQLGIQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSL 634



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 149/704 (21%), Positives = 271/704 (38%), Gaps = 130/704 (18%)

Query: 187  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 246
            PG +V   + ++ + G+++S   +  G V   HL +     + +    + K V  R+L V
Sbjct: 476  PGSIVEGTIITLEKFGMLVSVSDHIKGLVTNMHLADII-LKHPEKKLTEGKVVKCRVLTV 534

Query: 247  DPTSRAVGLTLNPYLL---------HNRAPPSHVKVGDI------------YDQSKVVRV 285
            DP  R + LT    ++         ++ A P     G I            Y+  K +  
Sbjct: 535  DPGQRRLHLTHKKTMVSSTLQVITQYSDAKPGTTSHGFITSVREYGCLVTFYNNVKGLVP 594

Query: 286  DRGLGLLLDIPSTPVSTPAYV----TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 341
               LG+        V     V     IS   +++  KL  K    +    ++     L+ 
Sbjct: 595  KDQLGIQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSLKANSANKSSTQV----SLQT 650

Query: 342  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 401
             +T +  A+  + +V   SD+KPGMV+ G V  +  +G  V+F  G+  L P   ++   
Sbjct: 651  ASTSLKNAAESKTMVTNFSDIKPGMVLPGFVKLLMGYGVFVEFAPGILGLAPNSFIANHF 710

Query: 402  IVKPGKKFKVGAELVFRV--LGVKSKRITVTHKKT-------------------LVKSKL 440
            +      FK+G  LV +V  +  + +R  V+ K++                   ++  + 
Sbjct: 711  VSDAASHFKIGQTLVAQVNEVDAERQRFLVSLKQSDLNPGSDWTSATAGALLEEILSERK 770

Query: 441  AILSSYAEATDRL----------ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 490
             IL   A  T+ +             G ++K++K+G  +   +G++GF    +L     C
Sbjct: 771  HILDELASKTEDVKNLLSLPVGSCIEGKVSKVKKNGISLTLPDGLKGFV-FHQLAQGVSC 829

Query: 491  EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNA 550
                +   G V+   +  S+     +      +  + ++   +K G  V  +V ++    
Sbjct: 830  LEGEVVQ-GCVLDLDVKKSVVELTLLPDVVKGRQNQKNKPKQMKPGQPVDFIVQLIKAEY 888

Query: 551  VVVYVIAKGYSKGTIPTE-HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKY 609
            +VV +    +  G  P + HL D       ++ V K      +  V      ++L S+ +
Sbjct: 889  MVVVLPCAAFKIGYAPAKMHLND-------IRDVAK------RFNVGQKYRGSILESSSH 935

Query: 610  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG--QRAD 667
             ++ S  Q  S   ++ P +V    V +I      V+ LG++ G    S A D   Q   
Sbjct: 936  CIVVSECQ-NSSKENLKPGTVTSVEVRSIKPLQMNVQ-LGQIHGRVHVSNAADDLIQGES 993

Query: 668  LSKTYYVGQSVRSNILDV--------------NSETGRITLSLKQSCCSSTDASFMQEHF 713
              K + +GQ +++ IL                N       LSLK S  S T AS +    
Sbjct: 994  PFKPFQMGQKIQAKILGFRDTKTHNFLPLTHRNFTRAVAELSLKPSMVSKTSASEVVGAV 1053

Query: 714  LLEEKI----------AMLQSSKHNGSELKWVEGFIIGSVIEGKV---HESNDFGVVVSF 760
              E+KI          A ++S+  N     W+    I +++ G+V   H SND  V+   
Sbjct: 1054 YDEKKIEDFKIGDEVQAFVKSTSDN---CIWMA---INTLVSGRVELLHASNDVKVL--- 1104

Query: 761  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 804
                          L+ A  + G+     +LDV K   +++LSL
Sbjct: 1105 ------------RHLSSA-FKPGNGHTCTVLDVDKDHEVLNLSL 1135


>gi|348532680|ref|XP_003453834.1| PREDICTED: protein RRP5 homolog [Oreochromis niloticus]
          Length = 1805

 Score =  375 bits (964), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 336/1371 (24%), Positives = 637/1371 (46%), Gaps = 134/1371 (9%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDN---LLPTIFH 54
            M + G V EV + ++ + LP GL+G   +    D+   +L  ++++ +      LP +F+
Sbjct: 88   MLMLGCVKEVTDFEVTVSLPSGLQGFLSIKNICDSYTKLLSEQLDSTDTEEICSLPHLFY 147

Query: 55   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 114
             G ++ C+V +LD  K+  G   I LS+   L+ K L+   ++ GMVL+A V+S+ED+GY
Sbjct: 148  PGMVLRCVVAKLDVTKR--GSLSIQLSINPKLVNKNLTPSALKTGMVLSACVESVEDYGY 205

Query: 115  ILHFGLPSFTGFLPRNNLA--ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 172
            I+  G+     FL + +L    N+  ++K G  L   V  +    +VV LS++  T+++ 
Sbjct: 206  IIDIGVSGTKAFLSKESLKFKHNNAQELKVGQYLTSQVEEVKNDGRVVQLSANLTTIAQT 265

Query: 173  VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 232
              +  +G ++  L+PG++V   ++ + ++G++L FL+ F G VD  H++         + 
Sbjct: 266  CAEPKQGWNLTTLLPGLLVKATIKEVTKHGLILDFLSSFNGQVDFLHME-----PEQASS 320

Query: 233  YNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVVRVDR 287
            Y +  KVNAR+L+++P +R VG++L  +L+H     +  P    ++G++  + K+  +  
Sbjct: 321  YTKGLKVNARVLYIEPQTRLVGMSLRSHLIHLETGIDPVPAGGERIGEVVKECKMTAMHH 380

Query: 288  GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY---KEGSCVRVRILGFRHLEGLAT 344
              G +L++P     T A+V  + + E      E +     E +C   RIL F  +E +  
Sbjct: 381  LSGGVLELPD---KTLAFVHRNHLKESNEEANENRVFAQPEHTC---RILDFSPMEQIHF 434

Query: 345  GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 404
              L+ S      + + D++ G VV+G V  + S G +V     +K L P  H+S+  +  
Sbjct: 435  ATLRRSVIGKPFYRYHDLQAGQVVEGTVSVLLSHGMVVHLSDHIKGLVPRTHLSDIVLQN 494

Query: 405  PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 462
            P KK+  G ++  RVL V  ++K++ +T KKTLV+S L +  SY +     ++HG+I  +
Sbjct: 495  PEKKYMEGMKVKCRVLSVDAENKKLYLTRKKTLVESSLPLFLSYNDTRPGRVSHGYIVSV 554

Query: 463  EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
            +  GC VRFYNGV+G  P SEL  +P   P  +++VGQVVK +++   P   ++ LSF  
Sbjct: 555  KDFGCIVRFYNGVKGLVPLSELSSEPIVRPGDIFYVGQVVKAKVLQCDPEKGKMVLSFKA 614

Query: 523  KPTRVSEDDL-----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 577
               + +E+        ++G  +   V   + N + V ++     +  +P  HL+DH+ + 
Sbjct: 615  VGEKENEETEKPEFDCEVGKRLDAKVLKKSLNGLEVAILPDEI-RAVLPMIHLSDHMSNC 673

Query: 578  TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 635
             ++   ++ G    +L+       NL L+ K ++  S ++  +  D S I     + G++
Sbjct: 674  PLLWESLQEGDIISKLICSSKNKQNLTLTKKPTVRWSLEEGVVAKDFSEITVGLQLVGWI 733

Query: 636  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR--IT 693
             NI+  G FV F   L G AP+S   D    D + ++ VGQ+V + + +++ E  R  +T
Sbjct: 734  KNIMSYGVFVEFPYGLVGLAPKSAMTDKFIRDATNSFQVGQTVIAKVTNLDEEKRRFLVT 793

Query: 694  LSLKQSCCSSTDASF-----MQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
            L + +      DA       +QE   + E + +    K N    + +    +G  ++  V
Sbjct: 794  LKISEVISPQGDAQTRLINGLQERRAVTEMLVL----KDNSELQQQLAALSVGQKLKLTV 849

Query: 749  HESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF 808
               ND G     +           H + G  +  G  + A +L V      V +S+ +  
Sbjct: 850  DTVNDTGARFKSDGLIGATILANKHHMMGVKLTEGQKVGAVVLHVDMLSACVHVSILSKL 909

Query: 809  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV 868
            +             KKK   E  K         A+V+ + +++ V+SL +        + 
Sbjct: 910  MG------------KKKSLAEGLKH-------TAMVQYIDKDFAVISLGDTAQLTVIQTY 950

Query: 869  SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL--KAISETETSSSKRAKKKSS 926
            S  N     + + L     ++  +  PS      L L+   +++ E + ++S+    +  
Sbjct: 951  SHLNEIFLSESEKLKVGMTLSAEVIEPSCQELQGLPLVSWERSMPERKRTASENQTGRKG 1010

Query: 927  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL-FSNFKIGQTVTA 985
            +  G ++Q  +  +KP  +++    G  G +H++EV +     + +   S+ K+G  VTA
Sbjct: 1011 HCFGEILQGTVRTVKPTCIQVTLEDGSSGSVHVSEVVEPAEVRLGSFPTSSVKVGSVVTA 1070

Query: 986  RII----AKSNK--PDMKKSFLW---ELSIKPSMLTVSEIGSKLLFEE--CDVSIGQRVT 1034
            R+I    A S++  P     F +   EL++ PS L  S     +  +E       G+ +T
Sbjct: 1071 RVIGGREASSHRFLPFSHPKFTYTISELTLIPSKLNESVDFKPVTAKEKLSSYKAGEEIT 1130

Query: 1035 GYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1092
             +V K +++   L  T    +   + +L    +P ++   ++   +G+AV   V+ ++  
Sbjct: 1131 CFVSKFNSDRKSLEVTTDPSVTGTVELLAMTTDPKDIGHPEKLHKLGQAVRARVVEVSFT 1190

Query: 1093 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1152
                 L L     G+               + +G I  G ++ I    G LV        
Sbjct: 1191 PHRFVLSL----TGVHK-------------LEKGSITLGIVTNIQPQTGLLV-------- 1225

Query: 1153 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1212
             ++ F  +  + V+D    Y   + +PL+ Y++ QF++C +L+           +LSLR 
Sbjct: 1226 -KLPFGGMGTVAVTDLADAY---RPNPLAVYNKDQFLRCYLLDNEND-----KWQLSLR- 1275

Query: 1213 SLDGMSSTNSSDLSTDVDTPGKHLE--KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1270
                      S L+ +   P K  E   +  L    I++GYVK+V  +G FI LSR +  
Sbjct: 1276 ---------PSRLNPEKAKPAKDPEVLSVNKLKAGQIIRGYVKSVGEQGVFIRLSRSIIG 1326

Query: 1271 KVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            +  L   +  +V++ +   +  P   L+  ++LS++   + + ++L   D+
Sbjct: 1327 RAELQQTTKYFVKNHKIVSEHLPPNTLLTTKILSIDEEEEFINLSLLPEDT 1377



 Score =  263 bits (673), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/307 (44%), Positives = 209/307 (68%), Gaps = 4/307 (1%)

Query: 1494 GHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSS 1552
            G   E  T  +K +RH +++EK+E E+ +   E  L++ +  P+    FERL+ +SPNSS
Sbjct: 1494 GEDQEGSTKPQKKSRHEQEQEKKEAEKALIQREAELMDPNLRPKDAAAFERLLLASPNSS 1553

Query: 1553 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1612
             +W+++MA  L    +E+ARS+AERAL+TI+ REE EKLN+WVA  NLEN YG   EE++
Sbjct: 1554 LLWLQFMAHHLQATQIEQARSVAERALKTISFREEQEKLNVWVALLNLENMYGT--EESL 1611

Query: 1613 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1672
             KVF+RA+Q+C+P  V+  L  +Y ++ + K A+ L   M+K+F+ + +VW      LL+
Sbjct: 1612 KKVFERAVQFCEPMPVYQKLAEIYAKSNKIKEAEGLYKTMVKRFRQNKEVWFSYGTFLLQ 1671

Query: 1673 QQQEGVQA-VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1731
            Q Q  V + ++QRAL SLP  + +  I++ A LEF+ G  +RGR+MF+ +L+ YPKRTDL
Sbjct: 1672 QGQSDVASTLLQRALKSLPPKESVDVIAKFAQLEFRYGDVERGRNMFDKVLTTYPKRTDL 1731

Query: 1732 WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1791
            WS+++D  ++ G    IR LF+R I LS+  KK+KF FK+YLEYEK+ G  + ++ VK+K
Sbjct: 1732 WSVFIDLMVKHGSQKEIRALFDRVIHLSVSVKKIKFFFKRYLEYEKTHGTPQSVQAVKEK 1791

Query: 1792 AMEYVES 1798
            A+E+VE+
Sbjct: 1792 AIEFVEA 1798



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 8/177 (4%)

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            GK   +  DL    +V+G V  + S G  + LS  +   V  ++LSD  +++PEK++  G
Sbjct: 443  GKPFYRYHDLQAGQVVEGTVSVLLSHGMVVHLSDHIKGLVPRTHLSDIVLQNPEKKYMEG 502

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN---NLSNLHVGDIVIGQIKRVESYG 1349
              V  RVLSV+  +K++ +T K    +T  +S +    + ++   G +  G I  V+ +G
Sbjct: 503  MKVKCRVLSVDAENKKLYLTRK----KTLVESSLPLFLSYNDTRPGRVSHGYIVSVKDFG 558

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
              +   N  + GL  +SELS + +     I+  G+ VK K+L+ D EK ++ L  K+
Sbjct: 559  CIVRFYN-GVKGLVPLSELSSEPIVRPGDIFYVGQVVKAKVLQCDPEKGKMVLSFKA 614



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 105/488 (21%), Positives = 197/488 (40%), Gaps = 72/488 (14%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
            G LV+A I E+    L L F   F+G++    +  +++       S++  G  V AR++ 
Sbjct: 281  GLLVKATIKEVTKHGLILDFLSSFNGQVDFLHMEPEQA-------SSYTKGLKVNARVLY 333

Query: 990  KSNKPDMKKSFL------WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1043
               +  +    L       E  I P       IG   + +EC ++    ++G V ++ ++
Sbjct: 334  IEPQTRLVGMSLRSHLIHLETGIDPVPAGGERIGE--VVKECKMTAMHHLSGGVLELPDK 391

Query: 1044 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1103
                    HLK      +S  E +E + F +  H     T  +L  +  +++    LR  
Sbjct: 392  TLAFVHRNHLK------ESNEEANENRVFAQPEH-----TCRILDFSPMEQIHFATLR-- 438

Query: 1104 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1163
               +  K     +D     +  G +V G +S +LS   G+VV +  H+ G V  T L +I
Sbjct: 439  -RSVIGKPFYRYHD-----LQAGQVVEGTVSVLLSH--GMVVHLSDHIKGLVPRTHLSDI 490

Query: 1164 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF--HVELSLRSSLDGMSSTN 1221
             + +P   Y EG             VKC+VL +    +  +    +  + SSL    S N
Sbjct: 491  VLQNPEKKYMEGMK-----------VKCRVLSVDAENKKLYLTRKKTLVESSLPLFLSYN 539

Query: 1222 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1281
                               D  P  +  GY+ +V   GC +     +   V LS LS   
Sbjct: 540  -------------------DTRPGRVSHGYIVSVKDFGCIVRFYNGVKGLVPLSELSSEP 580

Query: 1282 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ 1341
            +  P   F +G++V  +VL  +P   ++ ++ K    +   ++E     +  VG  +  +
Sbjct: 581  IVRPGDIFYVGQVVKAKVLQCDPEKGKMVLSFKAVGEKENEETEKPEF-DCEVGKRLDAK 639

Query: 1342 IKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV--KILKVDKEKRR 1399
            + +    GL + I    +  +  +  LS DH+ N   ++ + ++  +  K++   K K+ 
Sbjct: 640  VLKKSLNGLEVAILPDEIRAVLPMIHLS-DHMSNCPLLWESLQEGDIISKLICSSKNKQN 698

Query: 1400 ISLGMKSS 1407
            ++L  K +
Sbjct: 699  LTLTKKPT 706



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
            + S + VG  ++G IK + SYG+F+      LVGL   S +++  + +    ++ G+ V 
Sbjct: 719  DFSEITVGLQLVGWIKNIMSYGVFVEFP-YGLVGLAPKSAMTDKFIRDATNSFQVGQTVI 777

Query: 1388 VKILKVDKEKRRISLGMKSS 1407
             K+  +D+EKRR  + +K S
Sbjct: 778  AKVTNLDEEKRRFLVTLKIS 797


>gi|398407171|ref|XP_003855051.1| hypothetical protein MYCGRDRAFT_99211 [Zymoseptoria tritici IPO323]
 gi|339474935|gb|EGP90027.1| hypothetical protein MYCGRDRAFT_99211 [Zymoseptoria tritici IPO323]
          Length = 1790

 Score =  375 bits (963), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 276/897 (30%), Positives = 458/897 (51%), Gaps = 101/897 (11%)

Query: 944  ELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIAKSNKPDMK---- 997
            ++ ++      GRI ++E  D   ++         FK    V  +I+   +  + +    
Sbjct: 940  QVNVRLADNVQGRIDVSEAFDSWKDITNKAAPLEKFKPNDVVEVKILGIHDARNHRFLPI 999

Query: 998  -----KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1052
                 K  ++ELS K S +   + G + L     V  G     +V   D+    + +S +
Sbjct: 1000 SHRAGKVPVFELSAKRSRI---DAGDESLLSFDTVKKGSSCLAFVNNHDDSCVWVNLSPN 1056

Query: 1053 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1112
            ++ ++ ++D + +  +LQ  + RF IG A+   V +I+     L L  R   +  +   +
Sbjct: 1057 VRGRVALMDLSDDVGQLQNVENRFRIGCALKVTVKAIDLSSNRLDLTAR---EATTSGPL 1113

Query: 1113 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
             + +      +  G ++  R++K+      + V+I  +L G V   EL     SD     
Sbjct: 1114 TLQD------LKPGMVLPARVTKV--NERSVFVEIADNLAGPVPLVEL-----SDDYEQV 1160

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
            +  Q      Y++   V+  VL +    +  F   LS+R S           LS+ +   
Sbjct: 1161 NTAQ------YNKNDIVRVCVLGVDLPNKRAF---LSMRPS---------KVLSSSLPVK 1202

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
              H+  +  L    IV+G+VK V  KG F+ L  + DA V +S+LSD Y++  +  F I 
Sbjct: 1203 DPHVNDVSQLKVGDIVRGFVKQVADKGVFVTLGARTDALVRISDLSDQYIKDWQSVFEID 1262

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            +LV GRVL+V+  SK+V ++LK S         +N ++++ VG  V+G++++VE +G FI
Sbjct: 1263 QLVKGRVLAVDVSSKQVRLSLKNSHVDKNYTPPLN-INDIEVGMTVVGKVRKVEDFGAFI 1321

Query: 1353 TIENTN--LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
             I+NT   L GLCH SE++   ++++ T+Y AG+ VK ++L VD EKR+ISLG+K+SYF 
Sbjct: 1322 DIDNTQPRLSGLCHRSEVAAKRIEDVRTLYSAGDVVKARVLDVDVEKRKISLGLKASYFN 1381

Query: 1411 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1470
            N AD+    SEE+SD               E   V V+D D ES+  G + L+ ++   S
Sbjct: 1382 NTADD--EGSEEDSD--------------AEMGGVDVEDADEESDSDGGIDLSNVQDIES 1425

Query: 1471 VPPLEVNLDDEQPDMDNGISQNQG-------------HTDEAKTIDEKNNRHAKKKEKEE 1517
                  + D+ + D D  +    G              TD+    + ++   A KK K +
Sbjct: 1426 EEEFS-DADEMEVDDDPAVKLTAGLKTSGFDWTGDALDTDKGAASESEHEGPAPKKRKSK 1484

Query: 1518 REQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1577
            +  EI+      L+K  PR+  +FER +   PN+S +WI+YMAF L +++++KAR IAER
Sbjct: 1485 K-AEIKVDLTGDLDKYGPRSVSDFERQLLGQPNNSDLWIQYMAFQLQLSEIQKARDIAER 1543

Query: 1578 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1637
            AL+TI+IRE  EK N+W+A+ NLE EYG+  E+ V +VF++A Q  DP ++H  +  +Y 
Sbjct: 1544 ALRTIHIRETEEKANVWIAWLNLEVEYGD--EDRVEEVFKQACQVQDPLEMHEKMASIYI 1601

Query: 1638 RTEQNKLADELLYKMI--KKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHK 1693
             + ++  AD    +M+  K F+ S  VWL     LL   Q     +A++ +AL S+P  +
Sbjct: 1602 DSGKHVKADATFERMVGNKAFRASPDVWLNYATFLLDTLQAPARARALLSKALQSVPTRE 1661

Query: 1694 HIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLD-----------QEI 1740
            H    ++ A LEF++  G A+RGR++FEG++SEYPK +  W ++LD            E 
Sbjct: 1662 HRLLTAKFAALEFRSQYGDAERGRTIFEGLVSEYPKWSSGWDMWLDIERARVAHAENAEA 1721

Query: 1741 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            +   +   R LFER     +  ++ KF FKK+LE+E+    E+ +E VK+ A E+VE
Sbjct: 1722 KKDAIVKTRALFERISKTKMKKRRAKFTFKKWLEFEEKEAGEKEVEKVKKMAKEFVE 1778



 Score =  163 bits (413), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 179/708 (25%), Positives = 305/708 (43%), Gaps = 70/708 (9%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLAR---AADALDPIL----------DNEIEANEDNLLPT 51
           G V  +  +D+ + LP  L G A+    +++L+  +          D+  +  ED  L  
Sbjct: 161 GRVTGITGRDIALALPNNLTGYAQITAVSESLNARIERLLQDDGKPDDSGDDAEDIDLKQ 220

Query: 52  IFHVGQLVSCIVLQLDDDKKEIGKRK--IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
           +FHVGQ +  +V     +  + GK+K  I L+L    +  GL+ +       +   V+S+
Sbjct: 221 LFHVGQWLRAVVTSTGSESADGGKKKRHIELTLDPGQVNGGLAEDRFVVNSTIQGSVRSV 280

Query: 110 EDHGYILHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDP 166
           EDHG ++  GL   S  GF+ +  L     I  +  G ++  +V       KV+ L  D 
Sbjct: 281 EDHGIVMDLGLSDASVKGFISKKELGSAYNITQISEGQVMLCLVTGKGSNGKVLKLCPDT 340

Query: 167 DTVSKCVTKDLKGI-----SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           +  +  +  +   I     ++D   PG  V   V      GV+   +     T D+FH  
Sbjct: 341 NKFAVNLPSNKLPIVSEAPTVDAFQPGTAVDILVTDCDGRGVVGKIMGMLNVTADVFH-S 399

Query: 222 NTFPTTNWKNDYNQHKKVNARILFV----DPTSRAVGLTLNPYLLHNRAPPSHVKVGDIY 277
             +   +    +    K  ARI++     D + RA  L               + +    
Sbjct: 400 GAYAVEDMAEKHKIGSKAKARIIYSLPQDDGSRRAADLD------------QKLTLSATV 447

Query: 278 DQSKVVRV--DRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKK--YKEGSCVR 330
           + +KVVR+  +RGL L L +P     P +  A+  IS V++  +  +     YK  S  +
Sbjct: 448 ESAKVVRISAERGLFLTLPMPGNHEQPAA--AFAHISQVSDSRIDSISTTGPYKVDSTHK 505

Query: 331 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV------DSFGAIVQF 384
            RI+ +  ++ +    LK S  +       D+  G +VKG V  +         G +V+ 
Sbjct: 506 ARIIAYNPVDNVYYVSLKKSTLDQAFLRLEDLTVGSIVKGTVDKLILGGKKGVTGVLVKL 565

Query: 385 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLA- 441
              +  L P  H+S+ ++  P +K++ G  +  RVL V +  + I +T KK+LV++  + 
Sbjct: 566 SDSISGLVPEMHLSDTQLSHPERKYREGFPIKARVLSVDTDKRHIRLTVKKSLVEADDSS 625

Query: 442 -ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
            I   Y +    + + G I  +   G  V+FY  V+ + P +E+      +  + + +GQ
Sbjct: 626 LIWKDYDDLKPGMESQGTIINLLPAGAAVQFYGPVRAWLPVAEMSETFIEKTENHFRLGQ 685

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVI 556
            V+ +I+S  PA+R + ++        +E       V  G LVSGVV V   + V V  +
Sbjct: 686 TVRVKILSVNPAAREMKVTCKSGGELTAEQQTAWEEVSGGDLVSGVVSVKGADNVSVD-L 744

Query: 557 AKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLIN 613
           + G  KG +  EHL D     A      I+ G     LLVL+  + S  + LS K +L+ 
Sbjct: 745 SNGL-KGVVKVEHLVDASAAKAESALKRIRVGQTLSNLLVLEKLDRSQTVALSNKPALVE 803

Query: 614 SAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
            A+   L            VHG V NI  TG +V F   + G  P+S+
Sbjct: 804 DAKNGTLIKSFEDAQEGRKVHGSVRNITPTGVYVEFASGIVGLLPKSQ 851



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 139/319 (43%), Gaps = 36/319 (11%)

Query: 408  KFKVGAEL--VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 465
            +F++G  L    + + + S R+ +T ++      L +     +    ++    +TK+ + 
Sbjct: 1079 RFRIGCALKVTVKAIDLSSNRLDLTAREATTSGPLTL----QDLKPGMVLPARVTKVNER 1134

Query: 466  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
              FV   + + G  P  EL  D     ++ Y+   +V+  ++     ++R  LS  M+P+
Sbjct: 1135 SVFVEIADNLAGPVPLVELSDDYEQVNTAQYNKNDIVRVCVLGVDLPNKRAFLS--MRPS 1192

Query: 526  RVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
            +V    L            +K+G +V G V  V    V V + A+  +   +    L+D 
Sbjct: 1193 KVLSSSLPVKDPHVNDVSQLKVGDIVRGFVKQVADKGVFVTLGAR--TDALVRISDLSD- 1249

Query: 574  LEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN 628
             ++    +SV    +E DQL     L +D  S  + LS K S ++     P + + I   
Sbjct: 1250 -QYIKDWQSV----FEIDQLVKGRVLAVDVSSKQVRLSLKNSHVDKNYTPPLNINDIEVG 1304

Query: 629  SVVHGYVCNIIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
              V G V  + + G F+       RL+G   RS+    +  D+   Y  G  V++ +LDV
Sbjct: 1305 MTVVGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAAKRIEDVRTLYSAGDVVKARVLDV 1364

Query: 686  NSETGRITLSLKQSCCSST 704
            + E  +I+L LK S  ++T
Sbjct: 1365 DVEKRKISLGLKASYFNNT 1383



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 35/248 (14%)

Query: 1126 GDIVGGRISKIL----SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
            G IV G + K++     GV G++V++   + G V    L +  +S P   Y EG      
Sbjct: 540  GSIVKGTVDKLILGGKKGVTGVLVKLSDSISGLVPEMHLSDTQLSHPERKYREG------ 593

Query: 1182 GYDEGQF-VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  F +K +VL +    R   H+ L+++ SL  + + +SS +  D D          
Sbjct: 594  ------FPIKARVLSVDTDKR---HIRLTVKKSL--VEADDSSLIWKDYD---------- 632

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            DL P M  QG + N+   G  +     + A + ++ +S+ ++E  E  F +G+ V  ++L
Sbjct: 633  DLKPGMESQGTIINLLPAGAAVQFYGPVRAWLPVAEMSETFIEKTENHFRLGQTVRVKIL 692

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            SV P ++ ++VT K+    TA Q        +  GD+V G +    +  + + + N  L 
Sbjct: 693  SVNPAAREMKVTCKSGGELTAEQQ--TAWEEVSGGDLVSGVVSVKGADNVSVDLSN-GLK 749

Query: 1361 GLCHVSEL 1368
            G+  V  L
Sbjct: 750  GVVKVEHL 757



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 32/199 (16%)

Query: 620  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
            +D S +    +V G+V  + + G FV    R       S   D    D    + + Q V+
Sbjct: 1207 NDVSQLKVGDIVRGFVKQVADKGVFVTLGARTDALVRISDLSDQYIKDWQSVFEIDQLVK 1266

Query: 680  SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 739
              +L V+  + ++ LSLK         S + +++     I  ++                
Sbjct: 1267 GRVLAVDVSSKQVRLSLKN--------SHVDKNYTPPLNINDIE---------------- 1302

Query: 740  IGSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVE-------SGSVIQAAIL 791
            +G  + GKV +  DFG  +  +     + G     ++A   +E       +G V++A +L
Sbjct: 1303 VGMTVVGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAAKRIEDVRTLYSAGDVVKARVL 1362

Query: 792  DVAKAERLVDLSLKTVFID 810
            DV   +R + L LK  + +
Sbjct: 1363 DVDVEKRKISLGLKASYFN 1381



 Score = 45.1 bits (105), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 15/213 (7%)

Query: 496 YHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNA 550
           Y V    K RI++  P      +S     +    +  +DL  +GS+V G VD  ++    
Sbjct: 498 YKVDSTHKARIIAYNPVDNVYYVSLKKSTLDQAFLRLEDLT-VGSIVKGTVDKLILGGKK 556

Query: 551 VVVYVIAK--GYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLS 606
            V  V+ K      G +P  HL+D  L H    +   + G+    ++L +D +  ++ L+
Sbjct: 557 GVTGVLVKLSDSISGLVPEMHLSDTQLSHP---ERKYREGFPIKARVLSVDTDKRHIRLT 613

Query: 607 AKYSLI--NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
            K SL+  + +  +  D   + P     G + N++  G  V+F G +  + P ++  +  
Sbjct: 614 VKKSLVEADDSSLIWKDYDDLKPGMESQGTIINLLPAGAAVQFYGPVRAWLPVAEMSETF 673

Query: 665 RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
                  + +GQ+VR  IL VN     + ++ K
Sbjct: 674 IEKTENHFRLGQTVRVKILSVNPAAREMKVTCK 706


>gi|395502216|ref|XP_003755479.1| PREDICTED: protein RRP5 homolog [Sarcophilus harrisii]
          Length = 1865

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 372/1393 (26%), Positives = 631/1393 (45%), Gaps = 158/1393 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLP--TIF 53
            M+L G V E+N  +LVI LP GL G  +A   +DA    L  +++  E  ++L P   +F
Sbjct: 84   MRLLGCVKEINNLELVISLPNGLWGYVQATNISDAYTKKLSEQLDQEEPLEDLAPLSELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  +    K   K+ + LSL    + + LS  +++ GM+LT  V S+EDHG
Sbjct: 144  PPGLLVRCVVSSITSASK---KKSVKLSLNPKDVNRVLSPASLKPGMLLTGTVHSVEDHG 200

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  ++ G  L  ++  +      V LS+    
Sbjct: 201  YLVDIGVMGTKAFLPWQKEQEYVKQKNKGTKLRVGQYLNCLIEEVKGNGGSVLLSTIQSV 260

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  ++D L+PG++V  +VQ +  +G+ LSF + FTG VD  HL      + 
Sbjct: 261  VSAAIATEEQNWTLDNLLPGLVVKAQVQKVTPHGLTLSFFSSFTGLVDFMHLD-----SK 315

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS---HVKVGDIYDQSKVVRV 285
                Y Q + V A IL V P ++ V LTL    L    P +   H  +G + +   V   
Sbjct: 316  KAGHYFQTQMVRACILSVHPRTKCVRLTLRSSFLQAGRPITRLCHNLIGAVLNDVPVQGF 375

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    +    +   AY  I  +++ E     +K+K G+  + R++ +  ++ LA  
Sbjct: 376  FAKAGATFRLKDGSL---AYARIMHLSQTEKSFKPEKFKPGNMHKCRVIDYSPMDDLALL 432

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             LK S  E     + D+ PG VVK KV A+ S+G IV+    +K L P  H+++ +I  P
Sbjct: 433  SLKTSIIEAPFLRYHDLHPGQVVKAKVFALRSYGMIVKVTEQIKGLVPTLHLADVQIRNP 492

Query: 406  GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+++  E+  RVL    ++K++ +T KKTLV+S L  L+SY +A   L THG+I+ I+
Sbjct: 493  QKKYRLQDEVKCRVLTCDPENKKLLMTLKKTLVESNLPALTSYKQAKPELQTHGFISSIK 552

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
              GC V+FYN V+G  P+ ELG  P   P  +++VGQVVK  +++S P   R+ LSF + 
Sbjct: 553  DSGCVVKFYNDVRGLVPQRELGAQPISTPGEVFYVGQVVKVTVLNSEPEQERMLLSFRLL 612

Query: 523  ------KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 576
                   P +  +   +K+G LV   V   T   + V ++     +  +PT HL+D + +
Sbjct: 613  SDKETEGPAQSQKKATIKVGQLVDVKVKKKTEKGLEVSILPNNI-RALLPTTHLSDSVNN 671

Query: 577  ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGY 634
            + ++ S ++ G    ++L L +   +++L  K +LI++ +  Q P   S   P  ++ G+
Sbjct: 672  SQLLYSWLRAGDVLHRVLCLSHSDGHIILCRKPALISAVESGQDPKVFSEFQPGMLLTGF 731

Query: 635  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 694
            V  I   G FV+F   L+G AP+S   D     +S  +  GQ+V + + +V  E  R+ L
Sbjct: 732  VKTIKAYGVFVQFPSGLSGLAPKSALSDKFVTTVSDHFVEGQTVVAKVTNVYEEKERMLL 791

Query: 695  SLKQSCCSSTDASFMQEHFL---LEE--KIAMLQSSKHNGSELKWVE---GFIIGSVIEG 746
            SL+ S     D +      L   LEE   +  L SS+ +       E   G ++  V++ 
Sbjct: 792  SLRLSDVCQEDTAVSSLALLSQWLEELQGVRSLMSSRDSMLTQTLAEITPGLLMDLVVQD 851

Query: 747  KVHESNDFGVVVSFEEHSDVYGFI----THHQLAGATVESGSVIQAAILDVAKAERLVDL 802
                S+D  ++ S      V G +     +HQ  G  ++ G   +A +L V   +  V +
Sbjct: 852  M---SSDGSLMFS---SGSVPGLVLKASRYHQ-GGKVMDPGQRTKAVVLHVDTLKSEVHV 904

Query: 803  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 862
            SL+   ++R      ++Q +K    R             A++E +++ + + SL E    
Sbjct: 905  SLRQELVNR-----KSKQLKKNTEHR-------------AVIEHLEKTFAIGSLMETGQL 946

Query: 863  IGYASVSDYN-TQKFPQKQFLNGQSVIATVM-ALPS---------SSTAGRLLLLLKAIS 911
            + +   S  N T +F  ++   GQ V   +  A PS         SS   R   L  A  
Sbjct: 947  VAFPVTSHLNDTFRFDSEKLQVGQRVSLIIKSAKPSDIGLFLAVESSVKKRTPALPLADP 1006

Query: 912  ET---ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 968
            E    E        +K +  +G +V   +  +K   + +    G  G IH +++ DD   
Sbjct: 1007 EPAGEEPGVMSSLLEKPTLPIGEMVTGTVKSVKATHVVVTLENGLVGCIHASQILDDVPL 1066

Query: 969  VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1028
              +   +  K+G+ VTAR+I +      K      +S   S  TVSE+  +    E D+S
Sbjct: 1067 GTQPT-AKLKVGKPVTARVIGQRTLLTHKT---LPISHPSSAQTVSELSIRSSELEKDIS 1122

Query: 1029 I------------------GQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSE 1068
            I                  GQ V  ++  + V  +W  + I+  ++ ++  L ++     
Sbjct: 1123 IDPSTHCSSPTEKLKQYLPGQTVICFMRKFNVIKKWLEVEITPDIRGRIPQLLTSLSFKV 1182

Query: 1069 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1128
            L+  +++F IG+A++  V+     K  L L L             I    ++    EG++
Sbjct: 1183 LKHPEKKFKIGQALSATVVGPESSKGFLTLSL-------------IGPHRLE----EGEV 1225

Query: 1129 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1188
              GR+ K++    GL V       G+V    L +         Y E    PL G+   + 
Sbjct: 1226 AMGRVVKVIPK-EGLQVLFPFGTIGKVSIFHLSD--------SYLEA---PLEGFHPEKI 1273

Query: 1189 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1248
            V+C VL     V     + LSLR      S TN   +   ++ P   +  I+++     +
Sbjct: 1274 VRCCVLSTKDPV-----LTLSLRQ-----SRTNPR-MKNKIEDP--EVNSIKNIKEGQHL 1320

Query: 1249 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPL 1305
            +GYV+ V   G    +   L  +V   +++  ++          P GKL++ +VL +   
Sbjct: 1321 RGYVEAVKKLGVHFRIGPTLVGRVKYRHVTKYFLSDKTLYRTYLPEGKLLSAKVLRLNRK 1380

Query: 1306 SKRVEVTLKTSDS 1318
             K V ++    D+
Sbjct: 1381 QKLVYLSFLPKDT 1393



 Score =  280 bits (715), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 137/290 (47%), Positives = 201/290 (69%), Gaps = 6/290 (2%)

Query: 1516 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1574
            ++ E+E+   E  L++ +  P T D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1576 QQAEKELTRIETALMDPNWQPETADDFDRLVLSSPNSSILWLRYMAFHLHATEIEKARAV 1635

Query: 1575 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1634
            AERAL++I+ REE EKLN+WVA  NLEN YG+  +E + KVF+RA+QYC+P KV   L  
Sbjct: 1636 AERALKSISFREEQEKLNVWVALMNLENMYGS--KETLSKVFERAVQYCEPLKVFFQLAD 1693

Query: 1635 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1693
            +Y ++E+ + A+E+  +M+K+F+    VW++    LL++ + E    ++ RA   LP+ +
Sbjct: 1694 IYSKSEKYQAAEEVYNQMLKRFRQEKTVWVKYGSFLLQRGKAEACHDLLPRAFSCLPQKE 1753

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753
            H+  IS+ A LEF  G  +RG++MFE  L+ YPKRTD+WSIY+D  I+ G    +R  FE
Sbjct: 1754 HVDVISKFAQLEFYQGDGERGKAMFESTLNSYPKRTDVWSIYIDMLIKFGSQKEVRDAFE 1813

Query: 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES--TLA 1801
            R + LSL PK+MKF FK+YL+YEK  G  E ++ VK+KA+ YVES  TLA
Sbjct: 1814 RVVHLSLSPKRMKFFFKRYLDYEKQHGTAETVQAVKEKALNYVESRNTLA 1863



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 157/707 (22%), Positives = 279/707 (39%), Gaps = 97/707 (13%)

Query: 701  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
            C   D S M +  LL  K +++++      +L        G V++ KV     +G++V  
Sbjct: 418  CRVIDYSPMDDLALLSLKTSIIEAPFLRYHDLH------PGQVVKAKVFALRSYGMIVKV 471

Query: 761  EEHSDVYGFITHHQLAGATVESGSV-------IQAAILDVAKAERLVDLSLKTVFIDRFR 813
             E   + G +    LA   + +          ++  +L      + + ++LK   ++   
Sbjct: 472  TEQ--IKGLVPTLHLADVQIRNPQKKYRLQDEVKCRVLTCDPENKKLLMTLKKTLVESNL 529

Query: 814  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 873
             A ++         ++A  +L  H  +++I    K++  V+    YN   G     +   
Sbjct: 530  PALTSY--------KQAKPELQTHGFISSI----KDSGCVVKF--YNDVRGLVPQRELGA 575

Query: 874  QKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGS 931
            Q    P + F  GQ V  TV  L S     R+LL  + +S+ ET    +++KK++  VG 
Sbjct: 576  QPISTPGEVFYVGQVVKVTV--LNSEPEQERMLLSFRLLSDKETEGPAQSQKKATIKVGQ 633

Query: 932  LVQAEITEIKPLELRLKFGI---GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
            LV  ++   K  E  L+  I        +  T ++D  +N  + L+S  + G  V  R++
Sbjct: 634  LVDVKVK--KKTEKGLEVSILPNNIRALLPTTHLSDSVNNS-QLLYSWLRAGD-VLHRVL 689

Query: 989  AKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQRVTGYVYKVDNEWALL 1047
              S+           L  KP++++  E G    +F E     G  +TG+V  +      +
Sbjct: 690  CLSHSDGH-----IILCRKPALISAVESGQDPKVFSE--FQPGMLLTGFVKTIKAYGVFV 742

Query: 1048 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1107
                 L        SA     +      F  G+ V   V ++ +EK+ + L LR   D  
Sbjct: 743  QFPSGLSG--LAPKSALSDKFVTTVSDHFVEGQTVVAKVTNVYEEKERMLLSLR-LSDVC 799

Query: 1108 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1167
             + T   S   +  ++ E   V   +S   S +   + +I P L   +   ++ +     
Sbjct: 800  QEDTAVSSLALLSQWLEELQGVRSLMSSRDSMLTQTLAEITPGLLMDLVVQDMSSDGSLM 859

Query: 1168 PLSGYDEGQFDPLSGY-------DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1220
              SG   G     S Y       D GQ  K  VL +  T++   HV  SLR  L    + 
Sbjct: 860  FSSGSVPGLVLKASRYHQGGKVMDPGQRTKAVVLHVD-TLKSEVHV--SLRQEL---VNR 913

Query: 1221 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1280
             S  L  + +    H   IE L     +             +M + +L A  + S+L+D 
Sbjct: 914  KSKQLKKNTE----HRAVIEHLEKTFAIGS-----------LMETGQLVAFPVTSHLNDT 958

Query: 1281 YVESPEKEFPIGKLVA-----------GRVLSVEPLSKRVEVTLKTSDSRTASQ-----S 1324
            +    EK   +G+ V+           G  L+VE   K+    L  +D   A +     S
Sbjct: 959  FRFDSEK-LQVGQRVSLIIKSAKPSDIGLFLAVESSVKKRTPALPLADPEPAGEEPGVMS 1017

Query: 1325 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1371
             +     L +G++V G +K V++  + +T+EN  LVG  H S++ +D
Sbjct: 1018 SLLEKPTLPIGEMVTGTVKSVKATHVVVTLEN-GLVGCIHASQILDD 1063


>gi|171686100|ref|XP_001907991.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943011|emb|CAP68664.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1779

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 409/1547 (26%), Positives = 718/1547 (46%), Gaps = 222/1547 (14%)

Query: 339  LEGLATGILKASAFE----GLVFTHSDVKPGMVVK----GKVIAVDSF--GAIVQFPGGV 388
            L G A  IL +   E    G V  H DV   +V      G V  VD +  G+ ++     
Sbjct: 342  LPGTAADILVSEVTEHGLVGKVMGHLDVTADLVHSNAGPGAVDIVDEYKVGSRIK----A 397

Query: 389  KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 448
            + +C  P           +K K+G  L+  VL +K K         + K+K  I S   +
Sbjct: 398  RIICNFPT---------ARKPKLGISLLPHVLSLKPK---------IAKTKNGIESLPVD 439

Query: 449  --ATDRLITHGWITKIEKH-GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQV 501
              A   +I    + ++E   G +V     GV GF   S +    +D   E S  Y VG V
Sbjct: 440  ILAHSTIIEKCTVQRVEPEIGLYVDVGVEGVPGFVHISRVKDGKVDSLFETSGPYKVGSV 499

Query: 502  VKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV-------- 553
               R++   P     NLS       V E   +++  +  GVV       +VV        
Sbjct: 500  HAARVVGYNPFDGMYNLSM---EKSVLEQPFLRIQDIPVGVVVPGVVEKLVVNEHGLGGL 556

Query: 554  -YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSN-LLLSAKYS 610
               +A+G S G +P  HL+D HL+H    +   + G +    ++  N + + L L+ K +
Sbjct: 557  IVKVAEGIS-GLVPEMHLSDVHLQHP---EKKFREGMKVKTRVLSTNPARHQLRLTLKKT 612

Query: 611  LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 670
            L+NS          +       G +  +++ G  V+F G+L GF P S+  +    D  +
Sbjct: 613  LVNSDAPPVKSYDELAVGLQTFGTIVKLLDRGAIVQFYGQLRGFLPVSEMSEAYIQDPKE 672

Query: 671  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 730
             +  GQ++   +L  + E  R+ +S K               F LE+++A+         
Sbjct: 673  HFREGQTISVYVLSFDPEEKRMIVSCKDPSA-----------FGLEKQVAL--------- 712

Query: 731  ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------- 781
                 +   IG+++  KV +  +  + V   E S +   +    L   +V          
Sbjct: 713  -----KKLQIGNLVTAKVTQKTEDDIFVELVEGS-LKAILPVRHLTDKSVSKTQSALKKI 766

Query: 782  --SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 839
              + ++ +  +L+  +A R + LS K   ++    A   +      R R      G  + 
Sbjct: 767  HVNQTLTELVVLEKNEARRSIILSHKPSLVE---AAKKGKLLHTIDRARVGDVVPGFIRN 823

Query: 840  VNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 898
            + A    V+    L   LP+             + Q  P   F   QSV   + ++    
Sbjct: 824  ITATAAFVQFAGRLTALLPKTKLP--------RDIQDKPSFGFQKLQSVTVKITSV--DK 873

Query: 899  TAGRLLLLLKAIS----ETETSSSKRAKKKSSYD----------VGSLVQAEITEIKPLE 944
               R+++ + +      + + SS    K  ++ D          +G + +A +   K  +
Sbjct: 874  DLNRIVVAIPSEGGEDVQAKASSKSADKAMNALDLSVLTMEDLPIGKITKARVKSAKDTQ 933

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARII----AKSNK--PDM 996
            + +       GRI +++V D   ++  V+     FK G  +  R++    A++++  P  
Sbjct: 934  INVDLADNIQGRIDVSQVFDKFEDIRSVKKPLGKFKTGDIIDVRVLGIHDARNHRFLPIS 993

Query: 997  KKS--FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1054
             +S   + ELS KPS L        L + + +V  GQ    +V  V      + +S +++
Sbjct: 994  HRSSHTVLELSAKPSDLQEGSTPEPLSYAKLEV--GQTHLAFVNNVAQNHIWVNLSPNVR 1051

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
             ++  ++ + + S+LQ+  + F IG  +   V+ ++ E+  L L  R           D 
Sbjct: 1052 GRISAVELSDDLSKLQDVAKSFPIGSVLQVRVIHVDAERNRLDLSAR-----------DP 1100

Query: 1115 SNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            + +N  T+  I +G ++ G+++K    V  + V++   + G V   +L +         Y
Sbjct: 1101 NAENPLTWDKIQKGMVLPGKVTKTTDNV--VFVKLSESVAGPVFLCDLAD--------DY 1150

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
            +E   +PL  + + + V+  VL+I ++ +    + LS+R S           LS+ ++  
Sbjct: 1151 EEA--NPLK-HSKHEIVRVAVLDIDKSNK---RLRLSMRPS---------RVLSSRLEVT 1195

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
             K + K   ++   +++G+VKNV+ KG F+ L   + A V + NLSD Y++  ++ F I 
Sbjct: 1196 DKEITKDTKIAVGDVLRGFVKNVSDKGLFVTLGGDIVAMVQIKNLSDSYLKDWKEHFQID 1255

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            +LV GR++SV   + R+E++L+ S         I   S+L  G IV G++++VE +G FI
Sbjct: 1256 QLVKGRIISVS--NGRLEMSLRPSILSKDYVPPIT-FSDLKEGQIVTGKVRKVEDFGAFI 1312

Query: 1353 TIENTN-LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1411
             I+ ++ L GLCH SE+++  + + + +Y  G+KVK ++LKV+++ +RI+LG+K SYFK+
Sbjct: 1313 DIDGSDRLSGLCHRSEMADRAIKDAKALYSEGDKVKARVLKVEEKTKRINLGLKPSYFKD 1372

Query: 1412 DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM-ESEDGGSLVL---AQIES 1467
            D +    S E+                    +++  +D DM ++  GG+LV+   +  E 
Sbjct: 1373 DDEMDVDSDEDA------------------GAALDSEDEDMSDAGAGGALVINADSDDED 1414

Query: 1468 RASVPPLEVNLDDEQPD-----MDNGISQNQGHTDE----AKTIDEKNNRHAKKKEKEER 1518
                    V +DD Q +        G S N    DE    A + DE   +  +++++E R
Sbjct: 1415 DDDDADSNVEMDDAQTEGVKGLETGGFSWNADALDEDDKAAGSTDEPIKKKKQQQQRESR 1474

Query: 1519 EQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1578
             Q  R AE   L+ + P+T  ++ERL+   P+SS +WI YMAF + ++D+  AR +AERA
Sbjct: 1475 AQVDRTAE---LDVNGPQTTSDYERLLLGQPDSSELWIAYMAFQMQVSDLASARQVAERA 1531

Query: 1579 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1638
            ++TINI+EE EKLN+W+AY NLE  YG   EE V ++F+RA  Y D ++V+  L   Y +
Sbjct: 1532 IKTINIKEELEKLNVWIAYLNLEVAYGT--EETVEELFKRACTYNDEQEVYERLASSYIQ 1589

Query: 1639 TEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHI 1695
            + + K AD+L  K+IKKF   S  VW+     L  +  + +  +A++ RA  SL   K +
Sbjct: 1590 SGKLKEADDLFEKIIKKFGSKSPSVWINYAHFLHTKYDRPDKARALLPRAEKSLGGGKPV 1649

Query: 1696 --KFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD--LIR 1749
              + + + A LEF+  NG  ++GRS+FE IL+ +PKR DLW+ ++D E  +G  D   +R
Sbjct: 1650 ILELMPKFAALEFRSSNGDREQGRSLFETILAAFPKRFDLWNQFVDLETSVGTSDPATVR 1709

Query: 1750 GLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
             LF+R   +  L PK+ K  FK++ ++E   G+++  E V  KA E+
Sbjct: 1710 DLFDRGSKVKGLKPKQAKTWFKRWAQWEDKNGDKKSRERVSAKAQEW 1756



 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 312/1251 (24%), Positives = 549/1251 (43%), Gaps = 130/1251 (10%)

Query: 5    GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA-------------NEDNL-LP 50
            G V  +N  D+ + LP  L G      A+  I    ++A             +++N+ L 
Sbjct: 144  GTVCGINLTDVAVALPNNLVGHVPIT-AISDIFTQRLQAIAEKDEEEDQADEDDENIDLQ 202

Query: 51   TIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
            TIF +GQ V   V+   DD  +   KR I LSL+ +L   G+S + + E   L A V S+
Sbjct: 203  TIFRMGQYVRAYVVSTHDDSVDGKPKRHIELSLQPALANSGMSEQDIVENTTLMASVVSV 262

Query: 110  EDHGYILHFGLPS--FTGFLPRNNLAENSGI---DVKPGLLLQGVVRSIDRTRKVVYLSS 164
            EDHG+++   +      GFLPR  L  + GI    V+PG +L  +  S   + KVV LS+
Sbjct: 263  EDHGFVMDVNISDSKLKGFLPRKQL--DKGIPEESVQPGSVLLCIATSKAASGKVVQLST 320

Query: 165  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
              D +    +   +  +ID  +PG      V  + E+G++   + +   T D+ H     
Sbjct: 321  LEDRIGSIKSFPSEATTIDSFLPGTAADILVSEVTEHGLVGKVMGHLDVTADLVHSNAGP 380

Query: 225  PTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLLHNRAPPSHVKVG------DI 276
               +  ++Y    ++ ARI+   PT+R   +G++L P++L  +   +  K G      DI
Sbjct: 381  GAVDIVDEYKVGSRIKARIICNFPTARKPKLGISLLPHVLSLKPKIAKTKNGIESLPVDI 440

Query: 277  YDQSKVV------RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGS 327
               S ++      RV+  +GL +D+    V  P +V IS V + +V  L      YK GS
Sbjct: 441  LAHSTIIEKCTVQRVEPEIGLYVDVGVEGV--PGFVHISRVKDGKVDSLFETSGPYKVGS 498

Query: 328  CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IV 382
                R++G+   +G+    ++ S  E       D+  G+VV G V  + V+  G    IV
Sbjct: 499  VHAARVVGYNPFDGMYNLSMEKSVLEQPFLRIQDIPVGVVVPGVVEKLVVNEHGLGGLIV 558

Query: 383  QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKL 440
            +   G+  L P  H+S+  +  P KKF+ G ++  RVL     R  + +T KKTLV S  
Sbjct: 559  KVAEGISGLVPEMHLSDVHLQHPEKKFREGMKVKTRVLSTNPARHQLRLTLKKTLVNSDA 618

Query: 441  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
              + SY E    L T G I K+   G  V+FY  ++GF P SE+      +P   +  GQ
Sbjct: 619  PPVKSYDELAVGLQTFGTIVKLLDRGAIVQFYGQLRGFLPVSEMSEAYIQDPKEHFREGQ 678

Query: 501  VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVDVVTPNAVVVYV 555
             +   ++S  P  +R+ +S    P+    +  V L     G+LV+  V   T + + V +
Sbjct: 679  TISVYVLSFDPEEKRMIVS-CKDPSAFGLEKQVALKKLQIGNLVTAKVTQKTEDDIFVEL 737

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAKYS 610
            + +G  K  +P  HL D  +  +  +S +K         +L+VL+ NE+  +++LS K S
Sbjct: 738  V-EGSLKAILPVRHLTD--KSVSKTQSALKKIHVNQTLTELVVLEKNEARRSIILSHKPS 794

Query: 611  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
            L+ +A+  +L           VV G++ NI  T  FV+F GRLT   P++K     +   
Sbjct: 795  LVEAAKKGKLLHTIDRARVGDVVPGFIRNITATAAFVQFAGRLTALLPKTKLPRDIQDKP 854

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
            S  +   QSV   I  V+ +  RI +++         A    +    ++ +  L  S   
Sbjct: 855  SFGFQKLQSVTVKITSVDKDLNRIVVAIPSEGGEDVQAKASSKS--ADKAMNALDLS--- 909

Query: 729  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG----------- 777
               +  +E   IG + + +V  + D  + V   ++  + G I   Q+             
Sbjct: 910  ---VLTMEDLPIGKITKARVKSAKDTQINVDLADN--IQGRIDVSQVFDKFEDIRSVKKP 964

Query: 778  -ATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 834
                ++G +I   +L +  A+  R + +S ++        A  +   +    +  +   L
Sbjct: 965  LGKFKTGDIIDVRVLGIHDARNHRFLPISHRSSHTVLELSAKPSDLQEGSTPEPLSYAKL 1024

Query: 835  GVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVM 892
             V QT  A V  V +N++ ++L P     I    +S D +  +   K F  G   +  V 
Sbjct: 1025 EVGQTHLAFVNNVAQNHIWVNLSPNVRGRISAVELSDDLSKLQDVAKSFPIGS--VLQVR 1082

Query: 893  ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIG 952
             +   +   RL L  +  +     +  + +K      G ++  ++T+     + +K    
Sbjct: 1083 VIHVDAERNRLDLSARDPNAENPLTWDKIQK------GMVLPGKVTKTTDNVVFVKLSES 1136

Query: 953  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1012
              G + + ++ DD         S  +I + V    I KSNK          LS++PS + 
Sbjct: 1137 VAGPVFLCDLADDYEEANPLKHSKHEIVR-VAVLDIDKSNK-------RLRLSMRPSRVL 1188

Query: 1013 VS--EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI--LDSAYEPSE 1068
             S  E+  K + ++  +++G  + G+V  V ++   +T+   + A + I  L  +Y    
Sbjct: 1189 SSRLEVTDKEITKDTKIAVGDVLRGFVKNVSDKGLFVTLGGDIVAMVQIKNLSDSY---- 1244

Query: 1069 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ--TF--IH 1124
            L++++  F I + V G ++S++  +  L + LRP           +S D +   TF  + 
Sbjct: 1245 LKDWKEHFQIDQLVKGRIISVSNGR--LEMSLRPSI---------LSKDYVPPITFSDLK 1293

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1175
            EG IV G++ K+      + +     L G  H +E+ +  + D  + Y EG
Sbjct: 1294 EGQIVTGKVRKVEDFGAFIDIDGSDRLSGLCHRSEMADRAIKDAKALYSEG 1344


>gi|390604643|gb|EIN14034.1| U3 snoRNP-associated protein Rrp5 [Punctularia strigosozonata
            HHB-11173 SS5]
          Length = 1502

 Score =  371 bits (953), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 345/1241 (27%), Positives = 610/1241 (49%), Gaps = 160/1241 (12%)

Query: 620  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
            S+ S I P ++V   +  ++ +G  ++ LG   G         G   D   TY  G  ++
Sbjct: 350  SNVSSILPGAMVQCLITAVVPSGLNLQVLGYFEGTVDLFHLPYGTPGD---TYKNGSKIK 406

Query: 680  SNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFL---LEEKIAMLQSSKHNGSELKW 734
            + IL   S T   R  LSL              EH L   ++ + A +  S    S L+ 
Sbjct: 407  ARILYDLSATSPRRFALSLA-------------EHILTLSMKGRAAAVDGSSKPLSLLQ- 452

Query: 735  VEGFIIGSVIEGK--VHESNDFGVVVSFEEHSDVYGFITH---HQLAGATVESG-----S 784
             + F +G+ +E    +    + G+V+   + ++ Y  I+      +A  +  SG     +
Sbjct: 453  -DDFPVGTTLEAAKVIRVEPERGLVLEVSDDTNGYVHISQVSDDHVAALSSSSGPWRVST 511

Query: 785  VIQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 843
            + +A +      + L+ LSL+ +V   RF +                 +D  V + +   
Sbjct: 512  IHRARVTGYHALDGLLQLSLRPSVLEKRFIQV----------------RDAEVGEVIKGT 555

Query: 844  VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 903
            V+ + ++ L + +      + + +     T K PQK+F  G S+   V+A+       R 
Sbjct: 556  VKKLTDSALFVEISGNVDGVVWPNHYADITLKHPQKRFKPGGSIKCRVLAV----NPERN 611

Query: 904  LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 963
             + L A      S     K+     VG +  A I  +    L+++F       +   E +
Sbjct: 612  RISLTAKKTLVESPLPIVKQVEDAIVGLVTHAVIFRVSDKGLQVEFFNNLKAFVPRKEAS 671

Query: 964  DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSM--LTVS---EIGS 1018
            D    +  +L +   +G+ V  RI                LS+ P+   +T S    + +
Sbjct: 672  D---IMGVDLSATIPVGKPVKVRI----------------LSVDPATGRITASIRQAVDA 712

Query: 1019 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1078
            +      DV++G  V+G V ++  +  LL++       L  L++      +   Q R  +
Sbjct: 713  QSASPVADVNVGDVVSGSVAELHKDNVLLSLKPSQAKGLLSLNNLANYRGISASQLRASL 772

Query: 1079 GKAVTGHVL------SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1132
               VTG +L      S N  K ++ +  +P       +   +S D ++     G +VGGR
Sbjct: 773  ---VTGEMLNNLVVVSRNANKGIVIVATKPVVRAPMTQGSALSMDTVEV----GSVVGGR 825

Query: 1133 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1192
            +  +     G ++++   + G +H T+    C  +    ++EG   P         +K  
Sbjct: 826  V--LRHTRKGALIKLNARITGLLHPTD----CTDN----FEEGNAFPAVD----SILKAV 871

Query: 1193 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1252
            V+E+ ++      + LS+R S    +S N+      V+ P   +  I DL     ++G++
Sbjct: 872  VVEVDKSRN---QLVLSMRRSRMDPTSNNT------VEDP--EVLAIADLQAGQTIRGFI 920

Query: 1253 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1312
            K+V+  G ++ML R +DA+V +  L D YV+  +  F   ++V GR+LSV+   K+VE++
Sbjct: 921  KSVSEHGLYVMLGRNIDARVQIRELFDEYVKDWKSRFSPNQIVKGRILSVDQDKKQVEMS 980

Query: 1313 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
             ++  S + S++++  LS+L  G  + G++K+VE YG+FI +E + L GLCH +++S++ 
Sbjct: 981  FRSVSSSSGSKTKLL-LSDLTEGQKIEGKVKKVEDYGIFIELEGSKLSGLCHKTQISDNP 1039

Query: 1373 VDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYF------KNDADNLQMSS--- 1420
              ++      +R G+KVK  +L VD EKRRISLG+K SYF        D    + SS   
Sbjct: 1040 DADVNLALRSFREGDKVKAMVLSVDHEKRRISLGLKPSYFTEADFESGDESGSETSSHIG 1099

Query: 1421 -------EEES---DEAIEEVGSYNRSSLLENSSVAVQDM--DMESEDGGSLVLAQIES- 1467
                   +EE+   +E + +V S + ++  EN S A   M  D+E+   G+    Q  S 
Sbjct: 1100 ILSEGHIDEEAVSPEEDMNDVASSHFNNDAENDSDADHTMQVDVEALTTGANDARQDYST 1159

Query: 1468 -RASVPPLEVNLDDE---QPDMDNGISQNQGHTDEAKTIDEKNNRHA---KKKEKEEREQ 1520
             +++  P ++ L  E   Q    +  + ++    E+ + DE N+  A   K+K +++ EQ
Sbjct: 1160 EQSTSAPKDLILKLEGGFQWSAKDSATHDEESGSES-SADEDNDESATQRKRKRRKQIEQ 1218

Query: 1521 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            ++ A     L    P +  +FER++ SSP+SS++WI+YM+F+L M++V++AR I  RAL+
Sbjct: 1219 DLTAD----LHNKMPESTADFERVLLSSPDSSYLWIQYMSFLLQMSEVDRAREIGRRALR 1274

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            TIN REE EKLN+W+A  NLEN YG   +E++  VF+ A +  D K +HL L  +++++ 
Sbjct: 1275 TINFREEQEKLNVWIALLNLENVYGT--DESLESVFKEAARSNDSKTIHLRLASIFDQSG 1332

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1699
            ++++A+E   +  KKF HS KVW    +  LK+ + E  + ++ R+L SL + KH+K IS
Sbjct: 1333 KHEMAEEQYKRTAKKFGHSSKVWTLYGEHYLKRGEHEQARKLLPRSLQSLEKRKHLKTIS 1392

Query: 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759
            + A LE+K G A+RGR++FEGI+  + KR D+W+IY+D E    ++  +R LF+R ++  
Sbjct: 1393 KFAQLEYKYGDAERGRTIFEGIVDSHSKRWDIWAIYMDMEAGQSNIQGLRNLFDRVLTQK 1452

Query: 1760 LPPKKMK---FLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            +   K K     FKK+LE E+S+G+E+  E VK KA+E+ +
Sbjct: 1453 MTSHKAKRVPSFFKKWLELERSIGDEDGAEIVKAKAIEWTQ 1493



 Score =  223 bits (567), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 216/810 (26%), Positives = 372/810 (45%), Gaps = 91/810 (11%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPILDNEIEANEDNL-- 48
           MK+ G +  V    L++ LP  L G          L  A +A+D   + E +A E +   
Sbjct: 131 MKILGQIVAVQPLALIVSLPNQLMGHIPITQISSQLTSALEAMDEGDETESDAMESDSRA 190

Query: 49  ------------LPTIFHVGQLVSCIVLQL----DDDKKEIG----------KRKIWLSL 82
                       L  IFHVGQ V C+V  +      D   +G           R++ LS+
Sbjct: 191 SPSRPHKPRIPELFDIFHVGQFVRCVVTAIHTPGTTDNTGLGLKGRGDLEKASRRVELSV 250

Query: 83  RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP 142
              L+  G+    ++ G  L+A +KS+EDHGY+L  G+            A+ +  + + 
Sbjct: 251 APHLVNAGVVKADLKPGFTLSAAIKSVEDHGYVLDLGMGDGISAFLSFEAAKQAPWNTEA 310

Query: 143 GLLLQGVVR----SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 198
           GL +  VV     S+ ++ +   +S DP+  +     ++  +S   ++PG MV   + ++
Sbjct: 311 GLCVGQVVDVNIVSLAKSGRTCTVSVDPEVFTSVSLSEVSNVSS--ILPGAMVQCLITAV 368

Query: 199 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDPTS-RAVGLT 256
           + +G+ L  L YF GTVD+FHL    P   +KN      K+ ARIL+ +  TS R   L+
Sbjct: 369 VPSGLNLQVLGYFEGTVDLFHLPYGTPGDTYKNG----SKIKARILYDLSATSPRRFALS 424

Query: 257 LNPYLL----HNRA--------PPSHVK----VGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
           L  ++L      RA        P S ++    VG   + +KV+RV+   GL+L++     
Sbjct: 425 LAEHILTLSMKGRAAAVDGSSKPLSLLQDDFPVGTTLEAAKVIRVEPERGLVLEVSD--- 481

Query: 301 STPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVF 357
            T  YV IS V+++ V  L      ++  +  R R+ G+  L+GL    L+ S  E    
Sbjct: 482 DTNGYVHISQVSDDHVAALSSSSGPWRVSTIHRARVTGYHALDGLLQLSLRPSVLEKRFI 541

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
              D + G V+KG V  +      V+  G V  +    H ++  +  P K+FK G  +  
Sbjct: 542 QVRDAEVGEVIKGTVKKLTDSALFVEISGNVDGVVWPNHYADITLKHPQKRFKPGGSIKC 601

Query: 418 RVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
           RVL V  +R  I++T KKTLV+S L I+    +A   L+TH  I ++   G  V F+N +
Sbjct: 602 RVLAVNPERNRISLTAKKTLVESPLPIVKQVEDAIVGLVTHAVIFRVSDKGLQVEFFNNL 661

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--V 533
           + F PR E     G + S+   VG+ VK RI+S  PA+ RI  S        S   +  V
Sbjct: 662 KAFVPRKEASDIMGVDLSATIPVGKPVKVRILSVDPATGRITASIRQAVDAQSASPVADV 721

Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE-HATVMKSVIKPGYEFDQ 592
            +G +VSG V  +  + V++  +    +KG +   +LA++    A+ +++ +  G   + 
Sbjct: 722 NVGDVVSGSVAELHKDNVLLS-LKPSQAKGLLSLNNLANYRGISASQLRASLVTGEMLNN 780

Query: 593 LLVLD-NESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETGCFVRFLG 649
           L+V+  N +  +++ A   ++ +     S  S   +   SVV G V      G  ++   
Sbjct: 781 LVVVSRNANKGIVIVATKPVVRAPMTQGSALSMDTVEVGSVVGGRVLRHTRKGALIKLNA 840

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
           R+TG    +   D    + +    V   +++ +++V+    ++ LS+++S    T  + +
Sbjct: 841 RITGLLHPTDCTDNFE-EGNAFPAVDSILKAVVVEVDKSRNQLVLSMRRSRMDPTSNNTV 899

Query: 710 QEHFLLEEKIAMLQSSKHNGSELKWVEGFI 739
           ++  +L   IA LQ+ +        + GFI
Sbjct: 900 EDPEVL--AIADLQAGQT-------IRGFI 920


>gi|410918265|ref|XP_003972606.1| PREDICTED: protein RRP5 homolog [Takifugu rubripes]
          Length = 1767

 Score =  370 bits (949), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 346/1362 (25%), Positives = 623/1362 (45%), Gaps = 161/1362 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIE-ANEDNL--LPTIFH 54
            M L G V +V + ++ + LP GL+G   +   +D+   +L  +++ A+ +++  LP +  
Sbjct: 89   MLLLGCVKDVADFEVTVSLPCGLQGFLSIRNISDSYTKMLSEQLDSADMEDICSLPDLLC 148

Query: 55   VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 114
             G +V C V +LD  K   G   I LS+   L+ K L+  ++  GMVL+  V+S+EDHGY
Sbjct: 149  PGMIVRCAVAKLDTSKG--GNLSIQLSINPKLVNKALTTSSLNAGMVLSGCVESVEDHGY 206

Query: 115  ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 174
            I+  G+     FLP+     N+  D+K G  +   V ++    +VV LS      S+   
Sbjct: 207  IVDIGIKGTNAFLPKKK-GPNNQEDLKVGQYVTSTVEAVKNEGRVVRLSVSQLNSSQACI 265

Query: 175  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
            +  +G ++  L+PG++V+  ++ + ++G+ +SFL+ FTG VD  H++         + Y 
Sbjct: 266  RSTQGWNLTNLLPGLLVNATIKKVTKHGLSVSFLSSFTGQVDFLHME-----PKEASSYK 320

Query: 235  QHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVVRVDRGL 289
            +  +V A +L+V+P++R V L+L  YLL      +  PP   +VG++    K+  V    
Sbjct: 321  EGDEVRACVLYVEPSTRLVALSLRSYLLQPGIRVDLCPPGDDRVGEVVKSCKMTTVHHMS 380

Query: 290  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGI 346
            G +L++P     T A+   + + E + +  E +     E +C   RIL F  ++ +    
Sbjct: 381  GAILELPD---KTMAFAHKNHLREPKAQLNENRLLAMPEHTC---RILDFSLMDNIYFVS 434

Query: 347  LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 406
            L+ S  +   F + D++ G VV+G V  + + G +V     +K L P  H+S+  +  P 
Sbjct: 435  LRKSVIDKPFFRYHDLQAGQVVEGTVTVLLAHGMVVHLADHIKGLVPRTHLSDILLKNPE 494

Query: 407  KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
            KK+  G ++  RVL V+   K++ +T KK LV+S L +  + ++A    ++HG+I  I+ 
Sbjct: 495  KKYMEGMKVKCRVLSVEPEHKKLFLTRKKALVESSLPLFRTISDARPGCVSHGYIVCIKD 554

Query: 465  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---- 520
             GC VRFYN V+G  P SEL  +P  +P   +++GQV+K +++       ++ LSF    
Sbjct: 555  FGCIVRFYNDVKGLVPLSELSSEPISQPKDFFYIGQVLKTKVLQCDREKAKLLLSFKGVM 614

Query: 521  --MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 578
                + T   E D  K+G  +   V    PN + V ++ +   +  +PT HL+DHL +  
Sbjct: 615  EGAAEQTAAPELD-CKVGEKLEAKVLKKMPNGLEVAILPEEI-RAYLPTMHLSDHLSNCP 672

Query: 579  VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVC 636
            ++   ++ G     L+ ++    N+ L+ K ++  S ++     D S I   + + G++ 
Sbjct: 673  LLWECLQEGDSISNLIYINRSHQNITLTKKPTIRWSLEEGVAAKDFSEIKVGTQLFGWIK 732

Query: 637  NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
            NI+  G FV F   L G AP+S   D   +D   TY +GQ+V + + +++ E  R  ++L
Sbjct: 733  NIMPYGVFVEFPYGLVGLAPKSAMADRFISDTKTTYKLGQTVIAKVTNLDEEKRRFLVTL 792

Query: 697  KQSCCSSTDASFMQEHFL-LEEKIAMLQSS-KHNGSELK-WVEGFIIGSVIEGKVHESND 753
            K S   S     +      L+E+ AM + S   + SEL+  +    +G  ++  V+ + D
Sbjct: 793  KISEVISPVGDVLTRLINGLQERKAMTEMSLARDDSELRQQLAALSVGQRLKLTVNTATD 852

Query: 754  FGVV-VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
             G   VS E H        HH + G  +  G  + A IL +      V +S+ +  + + 
Sbjct: 853  NGATFVSDELHGATIQASKHH-VTGMNLVPGQKVTAVILHIDLLSTCVHVSILSRLLGKK 911

Query: 813  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 872
            R  N            E SK         A VE + +++ V+ L    H     + S  N
Sbjct: 912  RSLN------------EGSK-------YTATVEHINQDFAVIFLDNTAHLTVIQTSSHLN 952

Query: 873  TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSL 932
                 + +   G S+   ++        G  L+  +  +    +    ++K   +  G +
Sbjct: 953  HTDIQELKL--GMSLTVELIEASCEKAHGLPLVAWERSAPKRQNVPSASQKGCCF--GEV 1008

Query: 933  VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTVTARII-- 988
            VQA++  +KP  +++    G  G +H++EV D K ++ +        K+G TVTAR+I  
Sbjct: 1009 VQAKVKSVKPTLIQVTLEDGSTGTVHVSEVMDPK-DLCQGFLPTLSVKVGSTVTARVIGG 1067

Query: 989  --AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1046
              A S+    K   L  +SIK  + +                +G+ +T +V K   +  +
Sbjct: 1068 REASSHSKLDKSVALKSVSIKEHLNS--------------YKVGEEITCFVSKFHPDRKV 1113

Query: 1047 LTISRH--LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1104
            L ++ H  +   + +L     P      +  F +G+AV   V  + +  K  R +L    
Sbjct: 1114 LEVTTHPGVTGTVELLAMVTNPRNATHPESVFKVGQAVYAKV--VERSTKPQRFIL---- 1167

Query: 1105 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQIGPH--LYGRVHFTEL 1160
                                   + G  ++K+  G    G+VV I P   L  ++ F  +
Sbjct: 1168 ----------------------SLTG--VTKLEKGAVTLGMVVNIDPQKGLLVKLPFGGM 1203

Query: 1161 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1220
              + ++D    Y   + +PL GY + Q                      LR  L G    
Sbjct: 1204 GTVAITDLADAY---RPNPLGGYSKNQI---------------------LRFFLLG---- 1235

Query: 1221 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1280
            N+++  T  D     +  +++L    I++GY+K+V   G FI LSR +  +  L + S  
Sbjct: 1236 NNNEAKTVKDP---EILSVDELKEGQIIRGYIKSVEKCGIFIRLSRSIVGRTELHH-STK 1291

Query: 1281 YVESPEK----EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            YV +  K      P   L+  ++LS++   + V ++L   D+
Sbjct: 1292 YVCNNHKILSEHLPPSTLITTKILSIDTEEESVSLSLLPKDT 1333



 Score =  288 bits (736), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 204/615 (33%), Positives = 321/615 (52%), Gaps = 75/615 (12%)

Query: 1236 LEKIEDLSPNMIVQGYVKNV-TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
            L  +  L    +  G V N+   KG  + L       V +++L+D Y     +  P+G  
Sbjct: 1169 LTGVTKLEKGAVTLGMVVNIDPQKGLLVKLPFGGMGTVAITDLADAY-----RPNPLGGY 1223

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1354
               ++L       R  +    ++++T    EI ++  L  G I+ G IK VE  G+FI +
Sbjct: 1224 SKNQIL-------RFFLLGNNNEAKTVKDPEILSVDELKEGQIIRGYIKSVEKCGIFIRL 1276

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYR----AGEKVKVKILKVDKEKRRISLGM------ 1404
              + +VG   +   S  +V N   I          +  KIL +D E+  +SL +      
Sbjct: 1277 SRS-IVGRTELHH-STKYVCNNHKILSEHLPPSTLITTKILSIDTEEESVSLSLLPKDTG 1334

Query: 1405 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM----ESEDGGSL 1460
            KS     ++  L +   EE     E     N+  L E+  V+ +        +  D G  
Sbjct: 1335 KSDVLP-ESLGLPLHLFEEEKTKCEVQKRNNKRKLSESEQVSKKKKKKKSKADGNDSGVE 1393

Query: 1461 V--------------------LAQIESRASVPPLEV--------NLDDEQPDMDNGISQN 1492
            V                    + + +S A +  L+V         L+  +P     +S  
Sbjct: 1394 VYFREEDDDDDDDAKKPQSGSIKETQSSAGLSRLQVAAGFSWDVGLNSLKP-----LSAV 1448

Query: 1493 QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA--------PRTPDEFERL 1544
            Q      +   +K+N+ A+KK + E EQ  +AAE+ L++++A        P     FERL
Sbjct: 1449 QESESSDEEEPDKSNK-AQKKSRHELEQGKKAAEKALMQREAELMDPSLQPEDAAAFERL 1507

Query: 1545 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1604
            + +SPNSS +W++YMA  L    +E+AR++AERAL+TI+ REE EKLN+WVA  NLEN Y
Sbjct: 1508 LLASPNSSLLWLQYMAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMY 1567

Query: 1605 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1664
            G   EE++ KVF+RALQ+C+P  V+  L  +Y ++E+ K A+ L   M+K+F+    VWL
Sbjct: 1568 GT--EESLKKVFERALQFCEPMPVYQQLADIYTKSEKMKEAESLYKTMVKRFRQHKAVWL 1625

Query: 1665 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1723
                 LL++ Q +   +++QRAL S+P  + +  I++ A LEF+ G A+RGR+MF+ +L+
Sbjct: 1626 SYGTFLLQRGQSDAANSLLQRALKSMPSKESVDVIAKFAQLEFRYGDAERGRTMFDKVLT 1685

Query: 1724 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1783
             YPKRTDLWS+++D  I+ G    +R LF+R I LS+  KK+KF FK+YLEYEK  G  +
Sbjct: 1686 SYPKRTDLWSVFIDLMIKHGSQKDVRELFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQ 1745

Query: 1784 RIEYVKQKAMEYVES 1798
             ++ VK+KA+E+VES
Sbjct: 1746 SVQAVKEKAVEFVES 1760



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 150/343 (43%), Gaps = 45/343 (13%)

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF--QDGISDKTVDISNDNMQTF 1122
            EP E   ++     G  V   VL +    +L+ L LR +  Q GI        +D +   
Sbjct: 312  EPKEASSYKE----GDEVRACVLYVEPSTRLVALSLRSYLLQPGIRVDLCPPGDDRV--- 364

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
               G++V       +  + G ++++        H   L+     +P +  +E +   +  
Sbjct: 365  ---GEVVKSCKMTTVHHMSGAILELPDKTMAFAHKNHLR-----EPKAQLNENRLLAMPE 416

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            +       C++L+ S      F   +SLR S+              +D P     +  DL
Sbjct: 417  HT------CRILDFSLMDNIYF---VSLRKSV--------------IDKP---FFRYHDL 450

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                +V+G V  + + G  + L+  +   V  ++LSD  +++PEK++  G  V  RVLSV
Sbjct: 451  QAGQVVEGTVTVLLAHGMVVHLADHIKGLVPRTHLSDILLKNPEKKYMEGMKVKCRVLSV 510

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
            EP  K++ +T K +   + S      +S+   G +  G I  ++ +G  +   N ++ GL
Sbjct: 511  EPEHKKLFLTRKKALVES-SLPLFRTISDARPGCVSHGYIVCIKDFGCIVRFYN-DVKGL 568

Query: 1363 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              +SELS + +   +  +  G+ +K K+L+ D+EK ++ L  K
Sbjct: 569  VPLSELSSEPISQPKDFFYIGQVLKTKVLQCDREKAKLLLSFK 611



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 120/288 (41%), Gaps = 36/288 (12%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            +  G +V G ++ +L+   G+VV +  H+ G V  T L +I + +P   Y EG       
Sbjct: 450  LQAGQVVEGTVTVLLAH--GMVVHLADHIKGLVPRTHLSDILLKNPEKKYMEGMK----- 502

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
                  VKC+VL +    +  F   L+ + +L              V++       I D 
Sbjct: 503  ------VKCRVLSVEPEHKKLF---LTRKKAL--------------VESSLPLFRTISDA 539

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
             P  +  GY+  +   GC +     +   V LS LS   +  P+  F IG+++  +VL  
Sbjct: 540  RPGCVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISQPKDFFYIGQVLKTKVLQC 599

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
            +    ++ ++ K      A Q+    L +  VG+ +  ++ +    GL + I    +   
Sbjct: 600  DREKAKLLLSFKGVMEGAAEQTAAPEL-DCKVGEKLEAKVLKKMPNGLEVAILPEEIRAY 658

Query: 1363 CHVSELSEDHVDNIETIYRA---GEKVKVKILKVDKEKRRISLGMKSS 1407
                 LS DH+ N   ++     G+ +   ++ +++  + I+L  K +
Sbjct: 659  LPTMHLS-DHLSNCPLLWECLQEGDSIS-NLIYINRSHQNITLTKKPT 704



 Score = 48.9 bits (115), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
            + S + VG  + G IK +  YG+F+      LVGL   S +++  + + +T Y+ G+ V 
Sbjct: 717  DFSEIKVGTQLFGWIKNIMPYGVFVEFP-YGLVGLAPKSAMADRFISDTKTTYKLGQTVI 775

Query: 1388 VKILKVDKEKRRISLGMKSS 1407
             K+  +D+EKRR  + +K S
Sbjct: 776  AKVTNLDEEKRRFLVTLKIS 795


>gi|326481772|gb|EGE05782.1| rRNA biogenesis protein RRP5 [Trichophyton equinum CBS 127.97]
          Length = 1738

 Score =  369 bits (946), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 375/1406 (26%), Positives = 654/1406 (46%), Gaps = 198/1406 (14%)

Query: 493  SSMYHVGQVVKCRIMSSIPASRRINLSFMM-------KPTRV----SEDDLVKLGSLVSG 541
            ++ YH G  +K R++++ P+S  + L F +        PT       +DDL  +  ++  
Sbjct: 426  TTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGGDDDLPLISDIIPE 485

Query: 542  VVDVVTPNAVVVYV-IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE 599
            V       ++ +YV +     +G +    LAD  ++  + M+   K G   +  ++  + 
Sbjct: 486  VKVTYVDTSLGLYVQLGSTKHQGFVHLSRLADGRVDSISSMEGPYKVGSTHEGRIIGFSA 545

Query: 600  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE-----TGCFVRFLGRLTGF 654
              NL L +    I   +Q       +   SVV G +  ++       G  V     ++G 
Sbjct: 546  MDNLFLVSLEPKI--IEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDNISGL 603

Query: 655  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 714
             P     D +     K +  G  V   IL V+ +  ++ L+LK+S  +S  A +      
Sbjct: 604  VPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAPW------ 657

Query: 715  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 774
                              K  E    GS   G + +  + G +V F  +  V GF+   +
Sbjct: 658  ------------------KDYESISAGSRSPGTLIKIQNNGAIVQF--YGAVKGFLPVSE 697

Query: 775  LAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 826
            ++ A ++        G V+    L V A+ ERLV +S K           S   A  +  
Sbjct: 698  MSEAYIKDPSQHFTVGQVVNVHALTVDAENERLV-VSCKD---------PSTVTADYQSA 747

Query: 827  KREASKDLGVHQTV-----NAIVEIVKENYLVLSLPEYNHSIGYAS--VSDYNTQKFPQK 879
              +    L V  TV     + ++  ++++ L+  L   + S G ++   S +N  +  QK
Sbjct: 748  FEKVHPGLVVSGTVFEKSSDDLLIKLQDSGLIARLTSNHISDGSSAKRTSTFNRIRVGQK 807

Query: 880  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDV--------- 929
              ++G  V       P    + R LL LK +S+  E S S  A +K +  V         
Sbjct: 808  --MDGLLVHKFA---PYKEDSDRFLLSLKPVSKPKEQSDSNPASEKKAPAVVLNNPIDEE 862

Query: 930  ---------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFK 978
                     G + +A+IT +K  +L +       GRI I+E+ D   ++ +      +F 
Sbjct: 863  LKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLKSFH 922

Query: 979  IGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1029
                +  R++   +  + K         K  ++ELS K S L  SE    L  E+  + +
Sbjct: 923  SKDILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEF-KPLHLEQ--LKV 979

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            G R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A+   V+ I
Sbjct: 980  GDRHIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVIGI 1039

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
            + EK  L L  R    G S KT+ +++      + +G I+ GR++KI      ++VQI  
Sbjct: 1040 DAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR--QVLVQIND 1088

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
            ++ G +   ++ +          D  + +P + + + + ++  V+++    +    +  S
Sbjct: 1089 NVVGAISLIDMAD----------DYTKVNP-TNFHKNEALRVCVVDVDIPNK---KISFS 1134

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
            +R S           LS+ +      +  I++L    IV+G+++ V + G F+ L   + 
Sbjct: 1135 VRPS---------KVLSSSLPVVDPEITSIDNLKVGQIVRGFIRRVDNIGVFVTLGHDVT 1185

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1329
            A + +S+LSD +++  + EF + +LV GR+  V+  + ++++TLK S      +     L
Sbjct: 1186 AYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLDPNYKPPFT-L 1244

Query: 1330 SNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
              L VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y   + VK 
Sbjct: 1245 KELKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKA 1304

Query: 1389 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE--AIEEVGSYNRSSLLENSSVA 1446
            K+LKVD EK +I+LG+K+SYF++         EEESD   + +E G      +L+    +
Sbjct: 1305 KVLKVDLEKGQIALGLKASYFRD-------LPEEESDANCSDDEAGGI----MLDAGGDS 1353

Query: 1447 VQDMDMESEDGG--SLVLAQIESRASVPPLEVNLDDEQPD-------MDNGIS-QNQGHT 1496
              D+ M    GG         E        E    +  PD       + +G      G  
Sbjct: 1354 DDDVSM----GGVDLEGEDDEEGEEEEDSDEDIEMENAPDSTKKGGLVTSGFDWTGDGDK 1409

Query: 1497 DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1556
            D+ +  DE        K K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W+
Sbjct: 1410 DQNEAADESAEDDGATKRKKRRKAEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLLWL 1469

Query: 1557 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1616
            KYMAF L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++ + +VF
Sbjct: 1470 KYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DDTLDEVF 1527

Query: 1617 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQE 1676
            + A +Y D  +++  +  ++ ++ + + ADEL    +KK   S   +       L    E
Sbjct: 1528 KSACEYNDAHEIYDRMTSIFIQSGKAEKADELFQTALKKKVSSTPDFFLNYANFLFDTME 1587

Query: 1677 GVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDL 1731
              Q    ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DL
Sbjct: 1588 APQRGRDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSFPKRIDL 1647

Query: 1732 WSIYLDQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLFKKYLEY 1775
            W++ LD EI++GD + +R LFER + +                 L  K+ KFLFKK+L +
Sbjct: 1648 WNVLLDLEIKVGDEEQVRRLFERVLGIGHGIVAADGTKGGPKKKLKEKQAKFLFKKWLAF 1707

Query: 1776 EKSV---GEEERIEYVKQKAMEYVES 1798
            E+ +   G+ + ++ VK +A +YV S
Sbjct: 1708 EEKIAPEGDTKMVDEVKARAADYVRS 1733



 Score =  147 bits (371), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 170/666 (25%), Positives = 286/666 (42%), Gaps = 66/666 (9%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------------- 48
           ++ G V+ +   D+ + LP  L G     +A+   L  ++EA   +              
Sbjct: 173 RILGQVSSIGLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEDDDDDDDD 231

Query: 49  -----LPTIFHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGM 100
                L     VGQ +   V      +DDKK   K+ I LS+       GL+   +    
Sbjct: 232 DDDLELKNYVKVGQYLRAAVTATTRNEDDKKVKNKKHIELSIEPHAANSGLTKADMVVNA 291

Query: 101 VLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDR 155
            + A V S+EDHG ++  GL      GF+    L   +GID   VK G +   +V   + 
Sbjct: 292 TVQASVISVEDHGLVMDLGLEENEAKGFISSRELP--AGIDISTVKEGSVFLCIVTGQNA 349

Query: 156 TRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 213
           +  V+ LS+D  + +            +I+  +PG      +  +   G++   +     
Sbjct: 350 SGTVIKLSADLSSAASVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDA 409

Query: 214 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAV--GLTLNPYLLHNRAPPSHV 271
            VD+ H   +    +    Y+   K+  R++   P+S  V  G ++   +L      + V
Sbjct: 410 VVDVIHSGASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLV 469

Query: 272 KVGD--------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLE 320
             GD        I  + KV  VD  LGL + + ST      +V +S +A+   + +  +E
Sbjct: 470 NGGDDDLPLISDIIPEVKVTYVDTSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSME 527

Query: 321 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVD 376
             YK GS    RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I  +
Sbjct: 528 GPYKVGSTHEGRIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPE 587

Query: 377 SF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 433
              G IV     +  L P  HM++ ++  P KKF+ G ++  R+L V  + +++ +T KK
Sbjct: 588 GINGLIVSLTDNISGLVPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQLRLTLKK 647

Query: 434 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 493
           +L+ S  A    Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS
Sbjct: 648 SLLNSDSAPWKDYESISAGSRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPS 707

Query: 494 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTP 548
             + VGQVV    ++    + R+ +S    P+ V+ D     + V  G +VSG V   + 
Sbjct: 708 QHFTVGQVVNVHALTVDAENERLVVS-CKDPSTVTADYQSAFEKVHPGLVVSGTVFEKSS 766

Query: 549 NAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-----LDNESSN 602
           + +++ +   G     + + H++D      T   + I+ G + D LLV        +S  
Sbjct: 767 DDLLIKLQDSGLI-ARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKFAPYKEDSDR 825

Query: 603 LLLSAK 608
            LLS K
Sbjct: 826 FLLSLK 831



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 212/941 (22%), Positives = 380/941 (40%), Gaps = 177/941 (18%)

Query: 476  QGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 532
            QGF   S L        SSM   Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 507  QGFVHLSRLADGRVDSISSMEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 563

Query: 533  VKL-----GSLVSGVVD--VVTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSV 583
             +L     GS+V G ++  ++ P  +   +++      G +P  H+AD  L+H    +  
Sbjct: 564  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDNISGLVPEMHMADTKLQHP---EKK 620

Query: 584  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 621  FREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 680

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 681  AIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLVVSCKDPSTV 740

Query: 703  STD--ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
            + D  ++F + H                            G V+ G V E +   +++  
Sbjct: 741  TADYQSAFEKVH---------------------------PGLVVSGTVFEKSSDDLLIKL 773

Query: 761  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD-------------LSLKTV 807
            ++   +    ++H   G++ +  S      +       LV              LSLK V
Sbjct: 774  QDSGLIARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKFAPYKEDSDRFLLSLKPV 833

Query: 808  FIDRFREANSNRQAQKK----------KRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 857
               +  +++SN  ++KK            + +A +D+ V +   A +  VK+  L + L 
Sbjct: 834  SKPK-EQSDSNPASEKKAPAVVLNNPIDEELKAMEDIVVGRITKAKITSVKDTQLNVVLA 892

Query: 858  E-----YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 912
            +      + S  + S  D   +K P K F +   +   V+ +  +     L +       
Sbjct: 893  DNVQGRIDISEIFDSWEDIKDRKRPLKSFHSKDILPVRVLGIHDARNHKFLPI------- 945

Query: 913  TETSSSKRAKKKSSYDVG---SLVQAEITEIKPLEL-RLKFG---IGF------------ 953
                 S R+ K S Y++    S +QA  +E KPL L +LK G   IGF            
Sbjct: 946  -----SHRSGKVSVYELSTKRSCLQA--SEFKPLHLEQLKVGDRHIGFVNNIAEDCLWLN 998

Query: 954  -----HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII---AKSNKPDMKKSFLWELS 1005
                  GR+ IT+++DD S +  N+  NF IG  +   +I   A+ N+ D+       + 
Sbjct: 999  ISPNVRGRLRITDISDDIS-IRGNIQKNFPIGSALQVAVIGIDAEKNRLDLSA----RIG 1053

Query: 1006 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE 1065
                 LTV            D+S G  + G V K+ +   L+ I+ ++   + ++D A +
Sbjct: 1054 SSAKTLTV-----------ADLSKGMILVGRVTKITDRQVLVQINDNVVGAISLIDMADD 1102

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD-GISDKTVD---ISNDNMQT 1121
             +++      FH  +A+   V+ ++   K +   +RP +    S   VD    S DN++ 
Sbjct: 1103 YTKVNPTN--FHKNEALRVCVVDVDIPNKKISFSVRPSKVLSSSLPVVDPEITSIDNLKV 1160

Query: 1122 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
                G IV G I ++ +   G+ V +G  +   +  ++L +  + +     DE Q D   
Sbjct: 1161 ----GQIVRGFIRRVDN--IGVFVTLGHDVTAYIRVSDLSDSFLKE---WKDEFQVD--- 1208

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
                 Q V+ ++  + +       ++++L+ S+              +D   K    +++
Sbjct: 1209 -----QLVQGRLTVVDKE---NNKIQMTLKKSV--------------LDPNYKPPFTLKE 1246

Query: 1242 LSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            L    IV G V+ V   G FI +  S  L      S +++  VE   + +    +V  +V
Sbjct: 1247 LKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKV 1306

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVI 1339
            L V+    ++ + LK S  R   + E + N S+   G I++
Sbjct: 1307 LKVDLEKGQIALGLKASYFRDLPEEESDANCSDDEAGGIML 1347



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 156/351 (44%), Gaps = 39/351 (11%)

Query: 74   GKRKIW-LSLRLSLL----YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 128
            GK  ++ LS + S L    +K L LE ++ G     +V +I +    L+   P+  G L 
Sbjct: 950  GKVSVYELSTKRSCLQASEFKPLHLEQLKVGDRHIGFVNNIAEDCLWLNIS-PNVRGRLR 1008

Query: 129  RNNLAENSGI------DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI 182
              +++++  I      +   G  LQ  V  ID  +  + LS+   + +K +T       +
Sbjct: 1009 ITDISDDISIRGNIQKNFPIGSALQVAVIGIDAEKNRLDLSARIGSSAKTLT-------V 1061

Query: 183  DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 242
              L  GM++  RV  I +  V++       G + +  + + +   N  N +++++ +   
Sbjct: 1062 ADLSKGMILVGRVTKITDRQVLVQINDNVVGAISLIDMADDYTKVNPTN-FHKNEALRVC 1120

Query: 243  ILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLL 293
            ++ VD  ++ +  ++ P  + + + P          ++KVG I  +  + RVD  +G+ +
Sbjct: 1121 VVDVDIPNKKISFSVRPSKVLSSSLPVVDPEITSIDNLKVGQIV-RGFIRRVDN-IGVFV 1178

Query: 294  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 353
             +        AY+ +SD+++  +++ + +++    V+ R+             LK S  +
Sbjct: 1179 TLGH---DVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLD 1235

Query: 354  ---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSE 399
                  FT  ++K G +V GKV  V+ +GA +   G   +  LC    M+E
Sbjct: 1236 PNYKPPFTLKELKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAE 1286


>gi|351715635|gb|EHB18554.1| RRP5-like protein [Heterocephalus glaber]
          Length = 1809

 Score =  367 bits (942), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 368/1372 (26%), Positives = 616/1372 (44%), Gaps = 158/1372 (11%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVAQEEPLKDLLRLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  +   ++  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSVSITER--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  +K G  L  ++  +  +  V  LS +   
Sbjct: 202  YLVDIGVVGTRAFLPLQKAQEYIRQKNKGAKLKVGQYLNCIIEEVKSSGGVASLSIEQSA 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            +S  +    +  S++ L+PG++V  +VQ + + G+ L+FLT+FTG VD  HL +    T 
Sbjct: 262  ISTAIATQEQNWSLNNLLPGLVVKAQVQKVTQFGLTLNFLTFFTGLVDFMHLDSKKVGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRV 285
            + N     + V A IL V P +RAV L+L P  L    P + +    +G +     V   
Sbjct: 322  FSN-----QAVRACILCVHPRTRAVRLSLRPIFLQPGRPLTQLSCQHLGAVMKDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    +    +   AY  +S +++ +     + +K G+  + RI  +  ++GLA  
Sbjct: 377  FNKAGATFKLKDGAL---AYARLSHLSDSKNAFRPETFKPGNMHKCRITDYSPMDGLALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D+K G VVKG V+ +  FG +V+    V+ L P  H+++  +  P
Sbjct: 434  SLRTSVIEAQYLRYHDIKTGAVVKGTVLTMRPFGMLVKVGEQVRGLVPATHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK++VGAE+  RVL    ++K++ +T KKTLV SKL +++ Y +A   L THG I + +
Sbjct: 494  EKKYQVGAEVKCRVLLCDPEAKQLIMTLKKTLVTSKLPVITCYEDAKPGLQTHGVIHRAK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
             +GC VRFYN VQG  P+ ELG     +P   ++ GQVVK  +++  PA  R+ LSF + 
Sbjct: 554  DYGCIVRFYNDVQGLVPKHELGAQCIPDPEKAFYAGQVVKVAVLNCEPAKERMLLSFKLL 613

Query: 524  PTRVSEDDLVKLGSLVSGVVDV----VTPNAVVVYVIAKGYSKGTIPT---EHLADHLEH 576
                 +++ V  G      V V    + P A  V+V    + +  +     E   D L+ 
Sbjct: 614  SDPEPKNERVGCGQKKRKDVGVGQAGLLPVAEQVFVFL--FPEQLVDVKVLEKTKDGLQV 671

Query: 577  ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 636
            A +  ++  P   F     L +  +N  L  ++     A Q P   S I P  ++ G+V 
Sbjct: 672  AVLPHNI--PA--FLPTPHLSDHVANGPLVHRWLQAVEAGQDPKSFSEIQPGMLLVGFVK 727

Query: 637  NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
            +I + G FV+F   L+G AP++   D    + S  +  GQ+V + + +V+ E  R+ LSL
Sbjct: 728  SIKDYGVFVQFPSGLSGLAPKAIMSDKFVTNPSDHFVEGQTVVAKVTNVDEEKQRMLLSL 787

Query: 697  KQSCC---SSTDASFMQEHFLLEE--KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE- 750
            + S C        S +     LEE   +  L SS+ +   ++ +     G V+   V E 
Sbjct: 788  RLSDCRLGGPASGSLLLLSQCLEELQGVRSLMSSR-DSVLVQALAEMTPGMVLNLVVQEV 846

Query: 751  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 810
            S D  VV +     D+    + +  AG  VESG   +A IL V      V +SL+   + 
Sbjct: 847  SEDGSVVFTGAPVRDLVLRASRYHRAGQEVESGQKKKAVILYVDMLGLEVHVSLRKELV- 905

Query: 811  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 870
                   NR+A K K+         VHQ   A V+ ++E++ V S+ E  H + ++  S 
Sbjct: 906  -------NRKAWKLKKG-------SVHQ---ATVQHLEESFAVASVGETGHLVAFSLASH 948

Query: 871  YN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLL---------LLLKAISETETSSSKR 920
             N T +F  ++   GQSV   V+        G LL         +L +   ++E      
Sbjct: 949  LNDTFRFDSEKLQVGQSV-CLVLKTAEPGVTGLLLAVEGPAARRVLRQPCKDSEMGDEGE 1007

Query: 921  A---------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE 971
                      +KK    +G +V   +  +KP  + +    G  G +H + V D+      
Sbjct: 1008 GADPALAAGPRKKHGLAIGDVVTGTVKSVKPTHVVVTLEDGVMGCVHASHVLDEVPEGAA 1067

Query: 972  NLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1031
               +  K+G+TVTAR+I   +     K+F  EL  K     ++   +  + +      GQ
Sbjct: 1068 PT-ATLKVGKTVTARVIGGRD----VKTF-NELE-KDGHTVLNTYSASPVEKIQQYRAGQ 1120

Query: 1032 RVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
             VT ++  Y V  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+  
Sbjct: 1121 TVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQALRATVVGP 1180

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
            +  K  L L L             I    ++    +G++  GR+ K+    G  V     
Sbjct: 1181 DSSKPFLCLSL-------------IGPHKLK----KGEVAMGRVVKVAPSEGLTVA---- 1219

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
              +GR     +    VSD    Y E    PL  +   + V+                   
Sbjct: 1220 FPFGRTGTVSV--FHVSD---SYSE---RPLQDFSPQKVVR------------------- 1252

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
                        + +  + V+ P   +  I D+    +++G+V++V   G  + L   ++
Sbjct: 1253 -----------TNPETKSKVEDP--EINSILDIKEGQLLRGFVRSVEPSGVLLGLGPSVE 1299

Query: 1270 AKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
                 S++S   +       K  P G+L+  RVL ++P    VE++    D+
Sbjct: 1300 GLARFSHVSQCSLPKKGLYSKYLPEGRLLTARVLRLDPSKNLVELSFLPGDT 1351



 Score =  244 bits (623), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 134/328 (40%), Positives = 203/328 (61%), Gaps = 16/328 (4%)

Query: 1475 EVNLDDEQPDMDNGISQNQGHTDE--AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1532
            +V LD   P +      +    DE       +K ++  ++ EK++ E+E+   EE L + 
Sbjct: 1487 DVGLDTLTPALPPRGENSDSEEDEKPPHATQQKKSKKERELEKQKAEKELSRIEEALRDP 1546

Query: 1533 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1591
               P + D+F+RLV SSP+SS +W++YMAF L   +++KAR++AERAL+TI+ R   E  
Sbjct: 1547 GRQPESADDFDRLVLSSPSSSILWLQYMAFHLQATEIDKARAVAERALRTISFRGAREAE 1606

Query: 1592 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1651
             +  A             E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1607 RVGGA------------AESLSKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNR 1654

Query: 1652 MIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710
            M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ G 
Sbjct: 1655 MLKRFRQEKSVWIKYGAFLLRRGQAGASHRVLQRALECLPAKEHMDVITKFAQLEFQLGD 1714

Query: 1711 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1770
            A+R R++FE +LS YPKRTD+WS+Y+D  I+ G    +R +FER I L+L PKKMKF FK
Sbjct: 1715 AERARAIFENMLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLNLAPKKMKFFFK 1774

Query: 1771 KYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            +YL+YEK  G E+ +  VK KA+EYVE+
Sbjct: 1775 RYLDYEKQHGSEKDVRAVKAKALEYVEA 1802



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 140/328 (42%), Gaps = 43/328 (13%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1139
            +AV   +L ++   + +RL LRP           +S  ++   + +  + G       + 
Sbjct: 325  QAVRACILCVHPRTRAVRLSLRPIFLQPGRPLTQLSCQHLGAVMKDVPVQG-----FFNK 379

Query: 1140 VGG-LVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
             G    ++ G   Y R+ H ++ KN              F P + +  G   KC++ + S
Sbjct: 380  AGATFKLKDGALAYARLSHLSDSKNA-------------FRPET-FKPGNMHKCRITDYS 425

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1257
                            +DG++  +   L T V    ++L +  D+    +V+G V  +  
Sbjct: 426  ---------------PMDGLALLS---LRTSV-IEAQYL-RYHDIKTGAVVKGTVLTMRP 465

Query: 1258 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
             G  + +  ++   V  ++L+D  +++PEK++ +G  V  RVL  +P +K++ +TLK + 
Sbjct: 466  FGMLVKVGEQVRGLVPATHLADILMKNPEKKYQVGAEVKCRVLLCDPEAKQLIMTLKKTL 525

Query: 1318 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
              T+    I    +   G    G I R + YG  +   N ++ GL    EL    + + E
Sbjct: 526  V-TSKLPVITCYEDAKPGLQTHGVIHRAKDYGCIVRFYN-DVQGLVPKHELGAQCIPDPE 583

Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              + AG+ VKV +L  +  K R+ L  K
Sbjct: 584  KAFYAGQVVKVAVLNCEPAKERMLLSFK 611



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 46/87 (52%)

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            G+  +   ++ P M++ G+VK++   G F+     L      + +SD +V +P   F  G
Sbjct: 707  GQDPKSFSEIQPGMLLVGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTNPSDHFVEG 766

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSR 1319
            + V  +V +V+   +R+ ++L+ SD R
Sbjct: 767  QTVVAKVTNVDEEKQRMLLSLRLSDCR 793



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             + S +  G +++G +K ++ YG+F+    + L GL   + +S+  V N    +  G+ V
Sbjct: 711  KSFSEIQPGMLLVGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTNPSDHFVEGQTV 769

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 770  VAKVTNVDEEKQRMLLSLRLS 790


>gi|365991395|ref|XP_003672526.1| hypothetical protein NDAI_0K00920 [Naumovozyma dairenensis CBS 421]
 gi|343771302|emb|CCD27283.1| hypothetical protein NDAI_0K00920 [Naumovozyma dairenensis CBS 421]
          Length = 1718

 Score =  366 bits (939), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 339/1208 (28%), Positives = 575/1208 (47%), Gaps = 170/1208 (14%)

Query: 642  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701
            GC V F G LT F P ++  +       +   +GQ+V   IL ++ E  R+ ++    C 
Sbjct: 623  GCIVSFFGGLTAFLPNAEISEVFVKRPEEHLRLGQTVIVKILKMDEEQSRMLVT----CK 678

Query: 702  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSF 760
             S D +  ++                       +E  I G S+++  V E     ++V  
Sbjct: 679  ISNDQAEQKKE---------------------RIEKLIPGRSIVDVTVLEKTKESLIVEL 717

Query: 761  EEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFID 810
            ++  D+ G +    L+ A +E           GS +   ++D     ++ +L+LK   + 
Sbjct: 718  QD-VDLRGVLYVGHLSDARIEQNRAAFKKIVVGSKLTGLVIDKDTRTQIFNLTLKKSLLK 776

Query: 811  RFREANSNRQAQKKKRKREASKDLGVHQTVN--AIVEIVKENYLVLSLPEYNHSIGYASV 868
               + +S       K K + +   G  ++++   I       ++ L LP Y        +
Sbjct: 777  DAEKESSPLSYADLKSKDKTTPLHGYVKSISNKGIFVAFNGKFVGLVLPSYAVESRDIDI 836

Query: 869  SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS----------ETETSSS 918
            S         K F   QSV A +  L +     R LL LK  +          ET     
Sbjct: 837  S---------KVFYINQSVTAYL--LRTDDDNQRFLLTLKEPTNKVTITTNSLETINPVD 885

Query: 919  KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSN 976
               K    +  G+LV+A+I  IK  +L +      HGRI + EV D+ S +   +   S 
Sbjct: 886  PSMKSLKDFTPGTLVKAQIKGIKKNQLNVILADNLHGRIDVAEVYDNLSEIKDTKQPLSG 945

Query: 977  FKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDV 1027
            FK G  V A+II   +    K         K    ELS+K S+L    +  K +    DV
Sbjct: 946  FKKGDIVKAKIIGTHDMKSHKFLPISHHAIKGTALELSLKTSVLGNPVVNMKSI---SDV 1002

Query: 1028 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1087
            S+G  + GYV    +++  LTIS  LKA++ I D A +  +  + +  F +G A+   V 
Sbjct: 1003 SVGDELIGYVNNYTSKFLWLTISPILKAKISIFDLAKDGLKGSDIESNFPLGCALPVTVT 1062

Query: 1088 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1147
            SI+ E  ++ +       G S   + I++      I  GD +  RI+K+      L++ +
Sbjct: 1063 SIDTEHGIINV------KGKSHTVISIAD------IKVGDRLPARITKVTERY--LLLDL 1108

Query: 1148 GPHLYGRVHFTE-LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1206
            G  +      T+ L+N  +S  L    +G+        E + V  KVL +    +    +
Sbjct: 1109 GNGVSALSFATDALENFSLS--LVASFKGK--------ENKLVFVKVLSVDVESK---KI 1155

Query: 1207 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1266
             +SL+S     SS  S D                D+    IV   VKNV+ KG F+ LS 
Sbjct: 1156 HVSLKSDSAKSSSIKSHD----------------DIKQGDIVDALVKNVSDKGIFVYLSG 1199

Query: 1267 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1326
             + A V +S LSD Y++  +K +   + V G+V+  +    R+ +TL+ S+      + +
Sbjct: 1200 SIQAFVPVSKLSDSYLKEWKKFYKPMQHVIGKVVKSDE-DDRILLTLRESEV-NGDLNIL 1257

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEK 1385
               S++ V D+  G +K V  +G+F+ ++NT N+ GL H++E+++    ++ +++  G++
Sbjct: 1258 KGYSDIKVNDVFDGTVKNVTDFGVFVKLDNTVNVTGLAHITEIADTQPKDLSSLFGTGDR 1317

Query: 1386 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV 1445
            VK  +LKV+  K+++SL +K+S F  D+   + +++E+ DE ++ V  YN  S       
Sbjct: 1318 VKAFVLKVNPTKKQLSLSLKASRFSKDSATKKDTAKEDMDEPVD-VIDYNNES------- 1369

Query: 1446 AVQDMDMESEDGGSLVLAQIESRASVPP-LEVNLDDEQPDMDNGISQNQGHTDEAK---- 1500
                 D+ES+         ++ R  V     V+ DD    +  G        D+A+    
Sbjct: 1370 -----DVESD---------VDERPVVTKKTTVSTDDLS--LSTGFDWTASILDQAQDEES 1413

Query: 1501 --------TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSS 1552
                    T+ +K+    KK+  E++  +I           AP +  +FERL+  +PNSS
Sbjct: 1414 EEDEDEDFTVSKKHKHSKKKQIVEDKTIDISTR--------APESVADFERLIIGNPNSS 1465

Query: 1553 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1612
             +W+ YMAF L ++++EKAR +AERAL+TIN REE EK NIW+A  NLEN +G   EE +
Sbjct: 1466 VIWMNYMAFQLQLSEIEKARELAERALKTINFREEAEKQNIWIALLNLENTFGT--EETL 1523

Query: 1613 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLL 1671
              VF+R+ QY D   +H  LL +Y+ +E++  A EL     KKF      +W+     L+
Sbjct: 1524 EDVFKRSCQYMDSFTMHNKLLSIYQMSEKSDKASELYKVTAKKFGSEKVSIWVSWGDFLI 1583

Query: 1672 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1730
             Q Q +  ++++  +L +LP+  HI+ + + A LEF  G  + GRS+ EG++++ PKR D
Sbjct: 1584 SQGQTQEARSILANSLKALPKRSHIEVVRKFAQLEFAKGDPEGGRSLLEGLIADAPKRID 1643

Query: 1731 LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1790
            +W++Y+DQEI++ +   +  LFER ++  +  K+ KF F K+L++E+S  +++ +EYVK 
Sbjct: 1644 IWNVYIDQEIKIKEKKKVEELFERVLTKKVTRKQAKFFFNKWLQFEESQKDDKAVEYVKA 1703

Query: 1791 KAMEYVES 1798
            KA EYV S
Sbjct: 1704 KATEYVNS 1711



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 173/696 (24%), Positives = 310/696 (44%), Gaps = 77/696 (11%)

Query: 49  LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 102
           LP++   F +GQ + C V+    L+   K+   ++I L++  S +      + +     +
Sbjct: 202 LPSLERYFKIGQWLRCCVITNSALEPKMKKKNSKRIELTIEPSRV-NPFQEDDLLRSTAV 260

Query: 103 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKV-V 160
              VKSIEDHG  L  G+ + TGF+ + +  +   +   PG + L  V +  DR+ +V +
Sbjct: 261 QCSVKSIEDHGATLDLGIENMTGFISKKDCPDFETL--LPGSVFLGNVFKKSDRSVQVNM 318

Query: 161 YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 220
             ++  + +++         S+D +VPG  V    Q I   G+         G +   HL
Sbjct: 319 DFTNKKNKITQIS-------SVDAVVPGQSVDLLCQQITPRGINGKAFGLVPGFIGNAHL 371

Query: 221 QNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYLLH--NRAPP----SHV 271
           +  F   + K+ +     + ARI+ V       + + L++ P++L+  N+       S  
Sbjct: 372 R-VFKEEDLKHKFALGSNIQARIIAVLTNKENDKTLILSILPHILNLENKLKATESLSAF 430

Query: 272 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS-CVR 330
            +G  +D   V   D              S   Y+ + D    +V       +EG+  + 
Sbjct: 431 PIGYKFDSCDVKGRD--------------SDYLYLALDDDRIGQVHSSRVGEQEGTDKLP 476

Query: 331 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGV 388
            R+LGF  ++ +   +      +       D+  G ++ G ++  V S G  ++ F G  
Sbjct: 477 ARVLGFNSVDDVYELVTAPETLKLKYLRTKDIPVGELLTGCEIETVSSKGMKLKIFNGQF 536

Query: 389 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK----SKLAIL 443
            A  P  H+S+  +V P +KFK+G+++  RVL V  K R+ VT KKTLV     S +  +
Sbjct: 537 TATVPSLHISDTRLVYPERKFKIGSKVKARVLNVDEKGRVYVTLKKTLVNIEDDSDIQFI 596

Query: 444 SSYAEA-TDRLITHGWITKIEK---HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 499
           S+YA+A T +  +   +  +E    +GC V F+ G+  F P +E+       P     +G
Sbjct: 597 STYAQAKTIQEKSEKTVATVESFRPNGCIVSFFGGLTAFLPNAEISEVFVKRPEEHLRLG 656

Query: 500 QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSG--VVDVV----TPN 549
           Q V  +I+       R     M+   ++S D       ++  L+ G  +VDV     T  
Sbjct: 657 QTVIVKILKMDEEQSR-----MLVTCKISNDQAEQKKERIEKLIPGRSIVDVTVLEKTKE 711

Query: 550 AVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSA 607
           +++V +      +G +   HL+D  +E        I  G +   L++  +  + +  L+ 
Sbjct: 712 SLIVELQDVDL-RGVLYVGHLSDARIEQNRAAFKKIVVGSKLTGLVIDKDTRTQIFNLTL 770

Query: 608 KYSLINSAQQLPSDASHIHPNS-----VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 662
           K SL+  A++  S  S+    S      +HGYV +I   G FV F G+  G    S AV+
Sbjct: 771 KKSLLKDAEKESSPLSYADLKSKDKTTPLHGYVKSISNKGIFVAFNGKFVGLVLPSYAVE 830

Query: 663 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            +  D+SK +Y+ QSV + +L  + +  R  L+LK+
Sbjct: 831 SRDIDISKVFYINQSVTAYLLRTDDDNQRFLLTLKE 866


>gi|393218210|gb|EJD03698.1| hypothetical protein FOMMEDRAFT_139869 [Fomitiporia mediterranea
            MF3/22]
          Length = 1462

 Score =  364 bits (935), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 373/1381 (27%), Positives = 643/1381 (46%), Gaps = 186/1381 (13%)

Query: 493  SSMYHVGQVVKCRIMSSIP------------------ASRRINLSFMMKPTRVS----ED 530
            + ++  GQ V+  + S  P                  ASRR+ LS +  P +V+    + 
Sbjct: 194  TDLFQTGQYVRAVVSSVKPPGSTDGQIFSHSKDGVEKASRRVELSLI--PEQVNSGLNKS 251

Query: 531  DLVKLGSLVSGVVDVVTPNAVVVYVI--AKGYSKGTIPTEHLADHLEHATVMKSVI-KPG 587
            DL K  +L + V  V     V+   +    G+ +     +  +D     ++M +++ K G
Sbjct: 252  DLKKGHTLCAAVKSVEDHGYVLNIGLPDVSGFLRFKAQKDGSSDRRRTGSLMNTIVEKMG 311

Query: 588  YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
             +    ++ D+ES            N+ Q+  ++ S + P ++V   V +++ +G  V+ 
Sbjct: 312  DDGRTCILTDSESD---------FKNAIQKEVTNVSSVLPGTLVQALVTSVVPSGLAVQI 362

Query: 648  LGRLTG-----FAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DV-NSETGRITLSLKQSC 700
            LG   G       P S +        +  + VG+ +++ IL DV  +   R  LSLK   
Sbjct: 363  LGSFEGTIDLYHLPSSTS--------ASEFKVGKKLKARILYDVAGTSPPRFALSLK--- 411

Query: 701  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG-KVHE-SNDFGVVV 758
                      EH L    +   + S  +G  ++  E F +G++++  KV     + G+VV
Sbjct: 412  ----------EHVLT---LDAKKRSAESGQSVQ--ESFPVGTMLKSVKVKRVEPERGLVV 456

Query: 759  SFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLK-TV 807
              EE  D+ GF+    ++   V S          G+  QA ++     + ++ LS + +V
Sbjct: 457  GVEE--DLEGFVHISHVSDDHVPSLSSNSGPWKIGTSRQARVVGFHALDGILQLSFRPSV 514

Query: 808  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 867
               +F   +                D+ V + V   V+ + E+ L +S+     ++ + +
Sbjct: 515  LSQKFLRVD----------------DVTVGELVKGTVKKLTESCLFVSINGNVDAMIWPN 558

Query: 868  VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY 927
                   K PQK+F  G ++   V+ +       R  ++L A      S      K    
Sbjct: 559  HYADIMLKHPQKRFKPGGTLKCRVLVV----EPDRKRIMLTAKKTLVESDLPILSKIEDA 614

Query: 928  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
            + G ++   I ++    L ++F       +   EV++     V NL  ++ +G+++   I
Sbjct: 615  EAGMVIHGTICKVLEKSLVVEFYNHLRAVVPAREVSE---TPVTNLAESYAVGKSLKVCI 671

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1047
            ++       +++     SI+ ++      G   +     V +GQ V+G V +V  +  +L
Sbjct: 672  VSVD-----REAGRIVASIRQAL------GESTIGNIKSVEVGQTVSGTVQEVHGDNVVL 720

Query: 1048 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH---VLSINKEKKLLRLVLRPFQ 1104
             +       L  L +          Q R  I          V+S N +K ++ +  RP  
Sbjct: 721  ILEPSRARALISLHNIANRRRKTVEQLRSSITSGEKMEDLVVVSRNLDKGIVIVANRPSP 780

Query: 1105 DGISDKT--VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1162
               S K   +D+S       + EG  V GR+ K+  G  G VV+    + G +H      
Sbjct: 781  KASSSKQEPIDLSA------LSEGSTVVGRVVKL--GKQGAVVKFAGRVTGTLH------ 826

Query: 1163 ICVSDPLSGYDEGQFDPLSGYDE-GQFVKCKVLEISRTVRGTFHVELSLRSS-LDGMSST 1220
                 PL   D+  F+ L         +   ++ I +  +    + LS R S LD     
Sbjct: 827  -----PLDTTDD--FERLIAMPAMDSTITAAIIVIDQKAK---RLTLSTRPSRLD----Q 872

Query: 1221 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1280
            N+ +   D++ PG     IEDL     ++G+VKNV   G F+ + R +DA+V +  L D 
Sbjct: 873  NAKEKVVDLEVPG-----IEDLKVGQRLRGFVKNVAEHGVFVTIGRGIDARVQIKELYDE 927

Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1340
            YV+  +  F   +LV+GR+L +    K+VE+T +++  +T  +     LS+L  G  V G
Sbjct: 928  YVKDWKSGFKENQLVSGRILGINREKKQVEMTFRST--KTLPEKPEKLLSDLTEGQKVDG 985

Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEK 1397
            ++K+VE YG+FI+I+   L GLCH SE++++   ++      +R G+ VK  +L VD EK
Sbjct: 986  KVKKVEDYGIFISIDGAKLSGLCHKSEITDNKDADVTLALRHFREGDPVKAIVLSVDTEK 1045

Query: 1398 RRISLGMKSSYF-KNDADNL--QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1454
            R ISLG+K SYF K D ++    M  + E D  I+     +  S  E + V     + E 
Sbjct: 1046 RHISLGLKPSYFSKEDLESQPENMEPDAEVDGDIQMQDEVSGESDAEENKVIEDASEDEE 1105

Query: 1455 EDGGSLVLAQIESRASVPPLEVNLDDEQ----------PDMDNGISQNQGHTDEAKTIDE 1504
                  +   ++S    PP  V    +Q          P      ++ Q    E  T   
Sbjct: 1106 ----DDIEMIVDSSTFAPPTVVPDSPKQNAPLLAPVIAPQGFQWTNEQQQSDAEEATSSS 1161

Query: 1505 KNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAF 1561
             +       +K+ ++++ +  E+ L      RTP+   +FER + +SPNSSF+WI+YM+F
Sbjct: 1162 SDEDSDAPSDKKRKKKKKKTIEQDLTADMQTRTPESVADFERHLLASPNSSFLWIQYMSF 1221

Query: 1562 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1621
             L +A+++KAR I +RALQ I+IREE EKLN+W+A  NLEN YG   +E++  +F+ A +
Sbjct: 1222 QLQLAEIDKAREIGKRALQAISIREEQEKLNVWIALLNLENTYGT--DESLEALFRDAAR 1279

Query: 1622 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQA 1680
            + D K +HL L  +++++ + + A+E   +  KKF  S KVW    +  L++ Q +  + 
Sbjct: 1280 HNDSKTIHLRLANIFDQSGKPEKAEEQYKRTCKKFGQSSKVWTLFGEHYLRRGQADESRK 1339

Query: 1681 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1740
            ++ R+L SL + KH+K IS+ A LE+K G  +RG+++FEGI+  +PKR DLWSIY+D E 
Sbjct: 1340 LLPRSLQSLEKRKHLKTISKFAQLEYKLGDPERGKTIFEGIVDSHPKRWDLWSIYVDMEA 1399

Query: 1741 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
               D+  +R LFER  S  +   K K  FKK+LE E+ +G+EE    VK+KA+E+ + T 
Sbjct: 1400 GQKDIQSVRNLFERVFSHKMTSHKAKSFFKKWLELERRIGDEEGQRIVKEKAIEWTQRTA 1459

Query: 1801 A 1801
            A
Sbjct: 1460 A 1460



 Score =  211 bits (538), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 207/753 (27%), Positives = 343/753 (45%), Gaps = 67/753 (8%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG----------------LARAADALDPILDNEIEAN 44
           MKL G +  V    L++ LP  L G                 A A D  +   ++E  A 
Sbjct: 129 MKLLGQIVAVYPFSLIVSLPDQLLGHVPITHISSELTSALEAADADDVSEEGSESEGHAK 188

Query: 45  EDNLLPTIFHVGQLVSCIVLQL-------------DDDKKEIGKRKIWLSLRLSLLYKGL 91
           +   L  +F  GQ V  +V  +               D  E   R++ LSL    +  GL
Sbjct: 189 DPPDLTDLFQTGQYVRAVVSSVKPPGSTDGQIFSHSKDGVEKASRRVELSLIPEQVNSGL 248

Query: 92  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 151
           +   +++G  L A VKS+EDHGY+L+ GLP  +GFL      + S    + G L+  +V 
Sbjct: 249 NKSDLKKGHTLCAAVKSVEDHGYVLNIGLPDVSGFLRFKAQKDGSSDRRRTGSLMNTIVE 308

Query: 152 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 211
            +    +   L+         + K++  +S   ++PG +V   V S++ +G+ +  L  F
Sbjct: 309 KMGDDGRTCILTDSESDFKNAIQKEVTNVSS--VLPGTLVQALVTSVVPSGLAVQILGSF 366

Query: 212 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDPTSRA-VGLTLNPYLL----HNR 265
            GT+D++HL    P++   +++   KK+ ARIL+ V  TS     L+L  ++L      R
Sbjct: 367 EGTIDLYHL----PSSTSASEFKVGKKLKARILYDVAGTSPPRFALSLKEHVLTLDAKKR 422

Query: 266 APPS------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 319
           +  S         VG +    KV RV+   GL++ +         +V IS V+++ V  L
Sbjct: 423 SAESGQSVQESFPVGTMLKSVKVKRVEPERGLVVGVEE---DLEGFVHISHVSDDHVPSL 479

Query: 320 EKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 376
                 +K G+  + R++GF  L+G+     + S          DV  G +VKG V  + 
Sbjct: 480 SSNSGPWKIGTSRQARVVGFHALDGILQLSFRPSVLSQKFLRVDDVTVGELVKGTVKKLT 539

Query: 377 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 434
                V   G V A+    H ++  +  P K+FK G  L  RVL V+   KRI +T KKT
Sbjct: 540 ESCLFVSINGNVDAMIWPNHYADIMLKHPQKRFKPGGTLKCRVLVVEPDRKRIMLTAKKT 599

Query: 435 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 494
           LV+S L ILS   +A   ++ HG I K+ +    V FYN ++   P  E+   P    + 
Sbjct: 600 LVESDLPILSKIEDAEAGMVIHGTICKVLEKSLVVEFYNHLRAVVPAREVSETPVTNLAE 659

Query: 495 MYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 552
            Y VG+ +K  I+S    + RI  S    +  + +     V++G  VSG V  V  + VV
Sbjct: 660 SYAVGKSLKVCIVSVDREAGRIVASIRQALGESTIGNIKSVEVGQTVSGTVQEVHGDNVV 719

Query: 553 VYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD-NESSNLLLSAKY 609
           + ++    ++  I   ++A+     TV  ++S I  G + + L+V+  N    +++ A  
Sbjct: 720 L-ILEPSRARALISLHNIANR-RRKTVEQLRSSITSGEKMEDLVVVSRNLDKGIVIVANR 777

Query: 610 --SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG-FAPRSKAVDGQRA 666
                +S++Q P D S +   S V G V  + + G  V+F GR+TG   P     D +R 
Sbjct: 778 PSPKASSSKQEPIDLSALSEGSTVVGRVVKLGKQGAVVKFAGRVTGTLHPLDTTDDFER- 836

Query: 667 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            L     +  ++ + I+ ++ +  R+TLS + S
Sbjct: 837 -LIAMPAMDSTITAAIIVIDQKAKRLTLSTRPS 868



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 92/441 (20%), Positives = 173/441 (39%), Gaps = 86/441 (19%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            M + G + +V EK LV+     LR +  A +  +  + N  E+         + VG+ + 
Sbjct: 618  MVIHGTICKVLEKSLVVEFYNHLRAVVPAREVSETPVTNLAES---------YAVGKSLK 668

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL-SLETVQEGMVLTAYVKSIEDHGYILHFG 119
              ++ +D   +E G+  I  S+R +L    + ++++V+ G  ++  V+ +     +L   
Sbjct: 669  VCIVSVD---REAGR--IVASIRQALGESTIGNIKSVEVGQTVSGTVQEVHGDNVVLILE 723

Query: 120  LPSFTGFLPRNNLA-------ENSGIDVKPGLLLQGVV---RSIDRTRKVVYLSSDPDTV 169
                   +  +N+A       E     +  G  ++ +V   R++D+   +V +++ P   
Sbjct: 724  PSRARALISLHNIANRRRKTVEQLRSSITSGEKMEDLVVVSRNLDKG--IVIVANRPS-- 779

Query: 170  SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV------DIFHLQNT 223
             K  +   + I +  L  G  V  RV  + + G ++ F    TGT+      D F     
Sbjct: 780  PKASSSKQEPIDLSALSEGSTVVGRVVKLGKQGAVVKFAGRVTGTLHPLDTTDDFERLIA 839

Query: 224  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV----------KV 273
             P  +          + A I+ +D  ++ + L+  P  L   A    V          KV
Sbjct: 840  MPAMD--------STITAAIIVIDQKAKRLTLSTRPSRLDQNAKEKVVDLEVPGIEDLKV 891

Query: 274  G--------DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 325
            G        ++ +    V + RG+              A V I ++ +E V+  +  +KE
Sbjct: 892  GQRLRGFVKNVAEHGVFVTIGRGID-------------ARVQIKELYDEYVKDWKSGFKE 938

Query: 326  GSCVRVRILGFRHLEGLATGILKASAF-----EGLVFTHSDVKPGMVVKGKVIAVDSFGA 380
               V  RILG    +       +++       E L+   SD+  G  V GKV  V+ +G 
Sbjct: 939  NQLVSGRILGINREKKQVEMTFRSTKTLPEKPEKLL---SDLTEGQKVDGKVKKVEDYGI 995

Query: 381  IVQFPGG-VKALCPLPHMSEF 400
             +   G  +  LC   H SE 
Sbjct: 996  FISIDGAKLSGLC---HKSEI 1013


>gi|374109344|gb|AEY98250.1| FAFR566Cp [Ashbya gossypii FDAG1]
          Length = 1715

 Score =  363 bits (933), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 366/1352 (27%), Positives = 635/1352 (46%), Gaps = 199/1352 (14%)

Query: 520  FMMKPTRVSEDDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HL 574
             + KP   S D  + +G+++SG  +  V+ N + + +   G  K  +   H++D    + 
Sbjct: 478  LLAKPYLRSAD--IPVGTILSGCEITAVSGNGIELSLF-DGQFKAFVAPLHISDIRLVYP 534

Query: 575  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ---LPSDASHIHPNSVV 631
            E    + S +K      ++L +DN+   + ++ K SL+++      L SD   I   +  
Sbjct: 535  ERKFKIGSKVK-----GRVLHVDNKG-RVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEE 588

Query: 632  HGYVCNIIET----GCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDV 685
             G     +E+    GC V FLG L  F P  +  +   QRA       +GQ+V   +L+ 
Sbjct: 589  DGKTLATVESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRA--QDHLRLGQTVVVKVLEH 646

Query: 686  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVI 744
             ++  ++ ++ K    SS D+         ++K A              +   ++G S++
Sbjct: 647  VAKQSKVIVTRK---VSSEDSE--------KQKAA--------------INDLVVGRSIV 681

Query: 745  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVA 794
            +  V E     VVV   +   + G I    L+ + +E           GS +Q  ++D  
Sbjct: 682  DVTVVEKTKDSVVVELNDVG-LRGVIYVGHLSDSKLEQNRALLKKLRIGSSLQGVVMDKD 740

Query: 795  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKE 849
               R+ ++S K   I   ++A+ +         ++   +  +H  V +I +         
Sbjct: 741  VKTRVFNMSCKKSLI---KDASKDILPLTFVDIKDKDPNTPMHGYVKSISDRGIFVAFTG 797

Query: 850  NYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 909
             ++ L LP Y       +    +   F  K+F   QSV  TV  L +     R LL +  
Sbjct: 798  KFVGLVLPSY-------ATESRDVDIF--KKFYLNQSV--TVYLLRTDEENERFLLTM-- 844

Query: 910  ISETETSSSKR---------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 954
             S  +TS+ K                 K  S Y VG++ +A +  +K  +L +      H
Sbjct: 845  -SPPQTSNKKEDSNHDVAAVNPVDASVKIISQYSVGTITKARVKSVKKTQLNVVLADNLH 903

Query: 955  GRIHITEVNDDKSNVVENL---FSNFKIGQTVTARII----AKSNK--PDMKKS---FLW 1002
            GR+  +E+ D    + EN     + FK G  +  ++I    +K++K  P   ++    + 
Sbjct: 904  GRVDASEIYDTFEEI-ENPKEPLAKFKSGDVIDVKVIGFHDSKTHKFLPISHRTGVNTVL 962

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            ELS K S L     G+    E   +  G  + G+V      +  LT+S  LKA++   + 
Sbjct: 963  ELSAKKSALK----GAYQPIEFSGMKNGDELIGFVNNFAKGFIWLTLSPALKAKIPDFEL 1018

Query: 1063 AYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1121
            + + S         F +G A+   V  ++   K++ +  R           DI +     
Sbjct: 1019 SDDGSVFTGNLDESFPLGCALKVKVKELDPAHKIVSVSARKHA------ITDIKD----- 1067

Query: 1122 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
             I   D +  RI K+      L++ +G  L G V F       V+D L   +E      S
Sbjct: 1068 -IKVADKLPARIVKVADSY--LLLDLGNRLTG-VAF-------VTDAL---NEFSLSLRS 1113

Query: 1182 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
             Y++  G  +   V+ +    +    + LSLR+                 D   +++   
Sbjct: 1114 VYEDKIGSMILASVVGVDVENK---KINLSLRTE----------------DATDRYISSH 1154

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            +DL    +V+G++K+VT KG F+ LSR L A V +S L+D Y++  +K +   + + G+V
Sbjct: 1155 KDLKQGDVVRGFIKSVTDKGIFVYLSRTLQAFVPVSKLTDAYIKEWKKFYKTMQPITGKV 1214

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-N 1358
            ++ E  S R+ +T+K S+        + + ++L  GDI  G +K V  +G+F+ + NT N
Sbjct: 1215 VNCESDS-RILLTMKESEV-NGELKILKSYADLKSGDIFDGSVKNVTDFGVFVKLHNTLN 1272

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H SE+S+  +D++  ++  G+KVK  ILK + EK ++SLG+K+SYF+   D+   
Sbjct: 1273 VTGLAHKSEISDSKIDDLSLLFGEGDKVKAIILKTNPEKNQVSLGLKASYFQKAHDD--- 1329

Query: 1419 SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNL 1478
              E E  E+IEE      +    +   A++D++ E             + A  P  E + 
Sbjct: 1330 EDEAEPAESIEEANGEEINGEASDEDEAMEDIEYE------------HTPADAPSHETSS 1377

Query: 1479 DDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK----------KKEKEEREQEIRAAEER 1528
               +  +  G+S + G    A  +D+  NR              K+ ++ ++   A  +R
Sbjct: 1378 KAHKEAVPTGLSLSAGFDWTASILDQ--NREDNEESSEDEDFTSKKAKKNKKRHAAVIDR 1435

Query: 1529 LLEKD--APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1586
             ++ +  AP +  +FERL+  +PNSS +W+ YMAF L +++VEKAR +AERAL+TI+ RE
Sbjct: 1436 TVDINTKAPESVGDFERLIMGNPNSSVIWMNYMAFQLQLSEVEKARELAERALKTISFRE 1495

Query: 1587 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1646
            E+EKLNIW+A  NLEN +G   +E +  VF+RA QY D   +H+ L+ +Y  + ++  A 
Sbjct: 1496 EHEKLNIWIAMLNLENTFGT--DETLEDVFRRACQYMDAYTIHMKLISIYAMSSKDDKAV 1553

Query: 1647 ELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAIL 1704
            EL     KKF   +  +W+   + LL  +Q +  +AV+ +AL SLPR  HI  + + A L
Sbjct: 1554 ELYKAAAKKFGSENVSLWVSWGEFLLTHEQPDEARAVLAQALKSLPRRSHIDVVRKFAQL 1613

Query: 1705 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1764
            EF  G  ++GR++FEG+L++ PKR D+W++YLDQEI+  +      LFER +   L  K+
Sbjct: 1614 EFAKGDPEQGRALFEGLLADAPKRIDIWNVYLDQEIKSSNRARADALFERVLVAKLSRKQ 1673

Query: 1765 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
             KF F K+L+  +S  ++  +EY+K +A +YV
Sbjct: 1674 AKFFFNKWLQLAESTDDQRGVEYIKARAADYV 1705



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 266/1183 (22%), Positives = 499/1183 (42%), Gaps = 163/1183 (13%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRGLARAADALDPI------LDNEIEANEDNL-------- 48
            L G +  VN  DL I L  GLRG     +   P       LD  +++  ++         
Sbjct: 116  LLGQLCGVNRTDLCIALTDGLRGYVPLTNISAPFTSLLEQLDQSMDSGSEDEDEDSDDEQ 175

Query: 49   ---------LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSL 93
                     LP +   F +GQ + C+V++   LD  KK+    +I LS+  S +      
Sbjct: 176  RDKPHTITELPELSKYFTLGQWLRCVVVKNSALDSQKKK--NSRIELSIEPSKV-NLFET 232

Query: 94   ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRS 152
            E + +   +   VKSIEDHG +L  G+   TGF+   +L++    DV PG + L  + + 
Sbjct: 233  EDLAKHTTVQCAVKSIEDHGALLDLGVQDVTGFISNKDLSKMG--DVMPGSVFLANITKR 290

Query: 153  IDRTRKVVY-LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 211
             DRT  V +  ++    VS+         S+D ++PG  +    + I  +G++       
Sbjct: 291  GDRTATVNFEFTAKNSKVSQIS-------SVDAVIPGHTIDFLCEKITNHGIIGKAF--- 340

Query: 212  TGTVDIFHLQN---TFPTTNWKNDYNQHKKVNARILFVDPTSRAVG----------LTLN 258
             G +D F  ++    F  T+ K+ Y     +  RI+    T +             L+L 
Sbjct: 341  -GVLDGFLSESQARVFSVTDMKHKYAIGSNIKVRIIATLRTKQGNKVILVSALPHILSLE 399

Query: 259  PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD--VAEEEV 316
              LL   A  +   VG ++D  K++  D              S   YV++SD  + +  +
Sbjct: 400  RNLLETEAMHA-FPVGYVFDNCKLLGRD--------------SQYLYVSLSDERIGQIHI 444

Query: 317  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV 375
             K      +   V+ R+ G+  ++G                  +D+  G ++ G ++ AV
Sbjct: 445  SKAGDAITQ-EAVKARVTGYNTVDGYYQLTSDPKLLAKPYLRSADIPVGTILSGCEITAV 503

Query: 376  DSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKK 433
               G  +  F G  KA     H+S+  +V P +KFK+G+++  RVL V +K R+ VT KK
Sbjct: 504  SGNGIELSLFDGQFKAFVAPLHISDIRLVYPERKFKIGSKVKGRVLHVDNKGRVYVTLKK 563

Query: 434  TLVK---SKLAILSSYAE----ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 486
            +LV    S + ++S + +    A +   T   +   +  GC V F   ++ F P  E+  
Sbjct: 564  SLVSANDSDIPLVSDFEQIAKLAEEDGKTLATVESFKPSGCVVTFLGNLKAFLPNKEISE 623

Query: 487  DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG--VVD 544
                       +GQ V  +++  +    ++ ++  +  +  SE     +  LV G  +VD
Sbjct: 624  AFVQRAQDHLRLGQTVVVKVLEHVAKQSKVIVTRKVS-SEDSEKQKAAINDLVVGRSIVD 682

Query: 545  VV----TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE 599
            V     T ++VVV +   G  +G I   HL+D  LE    +   ++ G    Q +V+D +
Sbjct: 683  VTVVEKTKDSVVVELNDVGL-RGVIYVGHLSDSKLEQNRALLKKLRIGSSL-QGVVMDKD 740

Query: 600  SSNLL--LSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
                +  +S K SLI  A +  LP    D     PN+ +HGYV +I + G FV F G+  
Sbjct: 741  VKTRVFNMSCKKSLIKDASKDILPLTFVDIKDKDPNTPMHGYVKSISDRGIFVAFTGKFV 800

Query: 653  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASFMQ 710
            G    S A + +  D+ K +Y+ QSV   +L  + E  R  +T+S  Q+     D++   
Sbjct: 801  GLVLPSYATESRDVDIFKKFYLNQSVTVYLLRTDEENERFLLTMSPPQTSNKKEDSN--- 857

Query: 711  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS---- 764
                    +A +       + +K +  + +G++ + +V   +     VV++   H     
Sbjct: 858  ------HDVAAVNPVD---ASVKIISQYSVGTITKARVKSVKKTQLNVVLADNLHGRVDA 908

Query: 765  ----DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSN 818
                D +  I + +   A  +SG VI   ++    +K  + + +S +T  ++   E ++ 
Sbjct: 909  SEIYDTFEEIENPKEPLAKFKSGDVIDVKVIGFHDSKTHKFLPISHRT-GVNTVLELSAK 967

Query: 819  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQ 878
            + A K           G +Q +     +   + L+  +  +     + ++S     K P 
Sbjct: 968  KSALK-----------GAYQPIE-FSGMKNGDELIGFVNNFAKGFIWLTLSPALKAKIPD 1015

Query: 879  KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSL-----V 933
             +  +  SV    +   S      L + +K +       S  A+K +  D+  +     +
Sbjct: 1016 FELSDDGSVFTGNLD-ESFPLGCALKVKVKELDPAHKIVSVSARKHAITDIKDIKVADKL 1074

Query: 934  QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 993
             A I ++    L L  G    G   +T+  ++ S  + +++ + KIG  + A ++     
Sbjct: 1075 PARIVKVADSYLLLDLGNRLTGVAFVTDALNEFSLSLRSVYED-KIGSMILASVVG---- 1129

Query: 994  PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHL 1053
             D++   +  LS++    T   I S    ++ DV     V G++  V ++   + +SR L
Sbjct: 1130 VDVENKKI-NLSLRTEDATDRYISSHKDLKQGDV-----VRGFIKSVTDKGIFVYLSRTL 1183

Query: 1054 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1096
            +A  F+  S    + ++E+++ +   + +TG V++   + ++L
Sbjct: 1184 QA--FVPVSKLTDAYIKEWKKFYKTMQPITGKVVNCESDSRIL 1224


>gi|406602958|emb|CCH45514.1| rRNA biogenesis protein [Wickerhamomyces ciferrii]
          Length = 1724

 Score =  363 bits (932), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 386/1506 (25%), Positives = 690/1506 (45%), Gaps = 195/1506 (12%)

Query: 364  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 423
            PG  ++  +  V   G   +  G V +   L H+  +   +   K+ +G+ +  RV+ V 
Sbjct: 338  PGNYIETLITEVHQDGLATKTYGLVDSSINLTHLGTYSAEEIKHKYAIGSNIKARVIAV- 396

Query: 424  SKRITVTHKKTLVKSKLAILSSYAEAT----------DRLITHGWITKIEKHG-----CF 468
               I     K LV S L  + +  E            D          +E  G      +
Sbjct: 397  ---ILSNGAKKLVLSVLPHVLNLNETNYDTEVSSAPLDAFPLGHIFESVEVKGYDSNYIY 453

Query: 469  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 528
            V+      G A  S      G   S  Y +G   K R++     S+  N   +    +V 
Sbjct: 454  VKIGGDRYGQAHTSRADTTAGL--SITYTIGSQHKARVLG---FSQLDNSYVLTMDPKVI 508

Query: 529  EDDLVK-----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 583
            E   +K     LG  V+G V  V+ +++ + +  +   +  +P  H++D          +
Sbjct: 509  EQKYLKAQDLPLGEKVNGEVISVSEDSMKIKIFKQ--FEAVVPAAHMSD--------VKL 558

Query: 584  IKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGY 634
            I P  +F        +++ +   +S + ++ K SL+     +    DA      SV    
Sbjct: 559  IYPERKFKIGSKVRGRIINISKYTSEITVTLKKSLVGIENVITKIDDAKVGERTSVT--- 615

Query: 635  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 694
            V +   +G  V F G L  F P+S+  +           +GQ++   I  VN ET RI++
Sbjct: 616  VTSFRPSGALVSFFGNLKAFLPKSEISETFVKKPEDHLRLGQTITVRIASVNKETHRISV 675

Query: 695  SLKQSCCSSTDASFMQEHFLLEE---KIAMLQSSKHN------GSELKWVEGFIIGSVIE 745
            S + S  ++ +     E  ++     K+ +++ SK +      G+ L+       G + E
Sbjct: 676  SCRLSEETTEEQQQALEQLVVGRSILKVEIVEKSKESVIVEIPGNNLR-------GVIFE 728

Query: 746  GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
            G + + N       FE++  +             +E GS I+  +LD     RL +L+ K
Sbjct: 729  GHLSDGN-------FEQNRAIL----------KRLEVGSSIEGLVLDKDSRSRLFNLTAK 771

Query: 806  TVFIDRFREANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEYNHSIG 864
               I           AQ+ K   + S D+ +  Q +   V+ V    + ++       + 
Sbjct: 772  KSLI---------TAAQEDKLPVKFS-DISISEQLIPGYVKSVTNKGIFVAFGAKLVGLI 821

Query: 865  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS------ 918
             A  +           F   QSV  +V  + +     R LL LK   E +T+S       
Sbjct: 822  LAKYATSRPVDDLSSVFHVNQSV--SVRVIRTDEEHNRFLLSLK---EKKTTSDDIVNPV 876

Query: 919  -KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFS 975
             +  K    +  G L +A I  +K  +L ++      GR+ ++++ +  D+    +   +
Sbjct: 877  DQTIKSAKEFVPGKLTKALIKSVKQSQLNVQLADNIQGRVDVSQIYETYDEIKNPKVPLA 936

Query: 976  NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1026
             FK G  +  ++I   +  + +         K  L ELS K S LT     + L F++  
Sbjct: 937  PFKKGDIIDVKVIGFHDARNHRFLPISHRRSKQILIELSAKKSDLTEGTTEA-LSFDK-- 993

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
            +++G     ++      +  L +S  +K ++  +D   + S L++    + IG A+   V
Sbjct: 994  LTVGTEWVAFINNATVGFFFLNLSPSIKGRISFMDLPGDASALKDLDGNYPIGSALKVKV 1053

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1146
             +++ E   + L  R  QD IS  T++         +  G +V  RI +I      ++V+
Sbjct: 1054 KAVDAENHNVLLTGR--QDSIS--TIED--------VKVGAVVPSRILRITESF--VIVE 1099

Query: 1147 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1206
            +  ++      T        D L  Y +   D    +++ + +  K+L +    +    +
Sbjct: 1100 LAENVTAMSFIT--------DALDDYSKKLEDV---FEKNEILPAKILSVDEHNK---KL 1145

Query: 1207 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1266
             +SLRS+                D   K + K +DL    +V G+VKN++ KG FI L R
Sbjct: 1146 NVSLRSN----------------DAKDKLISKSDDLKRGDVVHGFVKNISDKGLFISLGR 1189

Query: 1267 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1326
             +   V +S++SD ++++ +K +   + V G++++ +     V +TLK S+       E+
Sbjct: 1190 TVTGYVKVSDVSDSFIKAWKKYYKPHQQVIGKIINADT-EGNVTLTLKESEV----NGEL 1244

Query: 1327 NNLSNLH---VGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRA 1382
            N L       +GDI  G ++RV  +G+F+ ++ T N+ GLCH S+++++ V ++E ++  
Sbjct: 1245 NILKRFEDIVIGDIFEGSVRRVTDFGVFVKLDGTLNISGLCHHSQIADNDVTDLEALFGE 1304

Query: 1383 GEKVKVKILKVDKEKRRISLGMKSSYF-KNDADNLQMSSEEESDEAIEEVGSYNRSSLLE 1441
            G++VKVK+L VD  K+++SLGMK+SYF +N  ++  +  E+ S+E +EE      +    
Sbjct: 1305 GDRVKVKVLAVDTGKKQLSLGMKASYFIENADEDEDVDMEDASEENVEEDSDSEEAD--- 1361

Query: 1442 NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKT 1501
                  QD + E+E+   +  A  E  +     E   + ++     G++ N G    A  
Sbjct: 1362 ----DKQDSEDEAEEDAIVEDAFNEQDSEESSDEEEEESKEDKSITGLTTN-GFDWTASI 1416

Query: 1502 IDEKNNRHAKKKE--------KEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSF 1553
            +D+ ++  +  +E        K+ + +E+       L+  AP++  +FERL+  +PNSS 
Sbjct: 1417 LDQVHDDESSDEEDFTDSKSKKKRKTKEVVEDTTGDLQSKAPQSVSDFERLIIGNPNSSI 1476

Query: 1554 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613
            VW+ YM+F L ++++EKAR IAERAL+TIN REE EKLNIW+A  NLEN +G   +E + 
Sbjct: 1477 VWMNYMSFQLQLSEIEKAREIAERALKTINYREEQEKLNIWIALLNLENTFGT--KETLE 1534

Query: 1614 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLK 1672
              F+R+ +Y D   +H  L+ +Y  +E+   A+ L   + KKF K S  VW+     LL 
Sbjct: 1535 DAFKRSTEYMDSLVMHQKLVSIYILSEKFSKAESLFKVITKKFGKESVSVWVSYGSYLLD 1594

Query: 1673 QQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1731
            Q Q +    V+  +L SLP+  HI+ + + A LEF  G A++GR++FEG++++ PKR DL
Sbjct: 1595 QNQSDKAHEVLASSLNSLPKRDHIEVVRKFAQLEFTKGDAEQGRTLFEGLIADVPKRIDL 1654

Query: 1732 WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1791
            W++Y+DQEI+  +   +  LFER +S  +  K+ KF F K+L + +  G+ +  +YVK K
Sbjct: 1655 WNVYIDQEIKKNENKKVSDLFERVLSRKVSRKQAKFFFGKWLSFAEKQGDTKTADYVKAK 1714

Query: 1792 AMEYVE 1797
            A EYV+
Sbjct: 1715 AQEYVQ 1720



 Score =  170 bits (430), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 184/694 (26%), Positives = 309/694 (44%), Gaps = 48/694 (6%)

Query: 42  EANEDNLLPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGM 100
           E+ E   L   F +GQ +  +V++     KK+  K++I LS+ +    K L  + +  G 
Sbjct: 196 ESKEFPQLSKFFKIGQWLRAVVVESTQKGKKKQNKKRIQLSVEIETTNKDLEDDDLVAGT 255

Query: 101 VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPG-LLLQGVVRSIDRT 156
            L   VKS+EDHG IL  G     GF+    L +N+  D   + PG + L  VV    RT
Sbjct: 256 TLQVSVKSVEDHGLILDTGREGLGGFISNKEL-KNANYDSTAIVPGTVFLSTVVNKNART 314

Query: 157 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
             V   +   + V+          SID +VPG  + T +  + ++G+          +++
Sbjct: 315 VTVKLNTGKKNPVTTTS-------SIDSIVPGNYIETLITEVHQDGLATKTYGLVDSSIN 367

Query: 217 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLLH----------N 264
           + HL  T+     K+ Y     + AR++ V  ++ A  L L+  P++L+          +
Sbjct: 368 LTHL-GTYSAEEIKHKYAIGSNIKARVIAVILSNGAKKLVLSVLPHVLNLNETNYDTEVS 426

Query: 265 RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 324
            AP     +G I++  +V   D     +       +    Y        +    L   Y 
Sbjct: 427 SAPLDAFPLGHIFESVEVKGYDSNYIYV------KIGGDRYGQAHTSRADTTAGLSITYT 480

Query: 325 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 384
            GS  + R+LGF  L+      +     E       D+  G  V G+VI+V      ++ 
Sbjct: 481 IGSQHKARVLGFSQLDNSYVLTMDPKVIEQKYLKAQDLPLGEKVNGEVISVSEDSMKIKI 540

Query: 385 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAI 442
               +A+ P  HMS+ +++ P +KFK+G+++  R++ +   +  ITVT KK+LV  +  +
Sbjct: 541 FKQFEAVVPAAHMSDVKLIYPERKFKIGSKVRGRIINISKYTSEITVTLKKSLVGIE-NV 599

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
           ++   +A     T   +T     G  V F+  ++ F P+SE+      +P     +GQ +
Sbjct: 600 ITKIDDAKVGERTSVTVTSFRPSGALVSFFGNLKAFLPKSEISETFVKKPEDHLRLGQTI 659

Query: 503 KCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG----VVDVVTPNAVVVYVIAK 558
             RI S    + RI++S  +     +E+    L  LV G     V++V  +   V V   
Sbjct: 660 TVRIASVNKETHRISVSCRLSE-ETTEEQQQALEQLVVGRSILKVEIVEKSKESVIVEIP 718

Query: 559 GYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINS 614
           G + +G I   HL+D + E    +   ++ G   +  LVLD +S + L  L+AK SLI +
Sbjct: 719 GNNLRGVIFEGHLSDGNFEQNRAILKRLEVGSSIEG-LVLDKDSRSRLFNLTAKKSLITA 777

Query: 615 AQQ--LPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 671
           AQ+  LP   S I     ++ GYV ++   G FV F  +L G      A      DLS  
Sbjct: 778 AQEDKLPVKFSDISISEQLIPGYVKSVTNKGIFVAFGAKLVGLILAKYATSRPVDDLSSV 837

Query: 672 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
           ++V QSV   ++  + E  R  LSLK+   +S D
Sbjct: 838 FHVNQSVSVRVIRTDEEHNRFLLSLKEKKTTSDD 871



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 121/304 (39%), Gaps = 50/304 (16%)

Query: 143  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMV----STRVQSI 198
            G  L+  V+++D     V L+   D++S      ++ + +  +VP  ++    S  +  +
Sbjct: 1046 GSALKVKVKAVDAENHNVLLTGRQDSIST-----IEDVKVGAVVPSRILRITESFVIVEL 1100

Query: 199  LENGVMLSFLT-----YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAV 253
             EN   +SF+T     Y     D+F      P               A+IL VD  ++  
Sbjct: 1101 AENVTAMSFITDALDDYSKKLEDVFEKNEILP---------------AKILSVDEHNKK- 1144

Query: 254  GLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVT 307
               LN  L  N A    +   D   +  VV        D+GL + L    T      YV 
Sbjct: 1145 ---LNVSLRSNDAKDKLISKSDDLKRGDVVHGFVKNISDKGLFISLGRTVT-----GYVK 1196

Query: 308  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKP 364
            +SDV++  ++  +K YK    V  +I+     EG  T  LK S   G   ++    D+  
Sbjct: 1197 VSDVSDSFIKAWKKYYKPHQQVIGKIIN-ADTEGNVTLTLKESEVNGELNILKRFEDIVI 1255

Query: 365  GMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            G + +G V  V  FG  V+  G   +  LC    +++ ++      F  G  +  +VL V
Sbjct: 1256 GDIFEGSVRRVTDFGVFVKLDGTLNISGLCHHSQIADNDVTDLEALFGEGDRVKVKVLAV 1315

Query: 423  KSKR 426
             + +
Sbjct: 1316 DTGK 1319


>gi|167516896|ref|XP_001742789.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779413|gb|EDQ93027.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1691

 Score =  363 bits (931), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 375/1523 (24%), Positives = 683/1523 (44%), Gaps = 216/1523 (14%)

Query: 52   IFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLS-LLYKGLSLETVQ---------- 97
            +FHVGQ + C V +  +DK+ +     R I  +L +  +L K    +T Q          
Sbjct: 169  LFHVGQQLVCAV-KAKEDKRLLLTTDPRLIHANLDVDDILQKAHRSQTPQLLSLTLMDSR 227

Query: 98   ---------EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL---AENSGIDVKPGLL 145
                     +G +L A V+S+EDHGY++  G+    GFLP        +  G ++ PG  
Sbjct: 228  HWSPPCAHCQGRLLPACVQSVEDHGYVVDLGIDGAQGFLPTKAAKLHVKQLGRNLVPGEP 287

Query: 146  LQGVVR-SIDRTRKVVYLSSDPDTVSKCVTKDLKG--ISIDLLVPGMMVSTRVQSILENG 202
            L  V   +   + +VV +S +   +SK  T +L      +  L PG+ V  +VQ +   G
Sbjct: 288  LFCVTTGTTAGSTRVVQVSIN---ISKLRTAELSTNEAVMSTLRPGLQVRGKVQQVHAKG 344

Query: 203  VMLSFLTYFTGTVDIFHLQ-NTFPTTNWKND--YNQHKKVNARILFVDPTSRAVGLTLN- 258
            ++L    +  G   I H+  +  PT     +  Y   + + AR++F+D  ++ +  +L  
Sbjct: 345  LVLQSGGFSIG---IHHVHFDQLPTEKKTTEQLYTVGQTLTARVIFIDLANKVILASLRQ 401

Query: 259  ----------PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL---DIPSTPVSTPA- 304
                      P  +  R P  HV+            VD+  G+L      P      PA 
Sbjct: 402  PHLQIDDCTLPLPIGTRLPSCHVRF-----------VDQAFGVLAAGQPAPGHARGVPAE 450

Query: 305  --------YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 356
                    +  IS + EE V  + K ++ G+    R++  +  +G+ +        +   
Sbjct: 451  EDTPEVLGFAHISRLLEEHVETVPKSFRRGTAHEGRVVAQQPFDGIYSFSFAPKDLKVPF 510

Query: 357  FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
                 ++ G++V+G V+++   G +++   G++A  P  H+++  +  P KKFK G ++ 
Sbjct: 511  LAAESIEVGLLVQGSVLSLIPSGMVIELASGIQARVPSEHLADVMLTHPEKKFKAGDKVK 570

Query: 417  FRVL------GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 470
             RVL      G K  RI VT KKTLV+S L I+ +  +A   + THG I+K+   GC V 
Sbjct: 571  GRVLSNEKLKGSK-HRIKVTLKKTLVRSDLPIIKNMHDAQPGMRTHGCISKVMDKGCIVS 629

Query: 471  FYNGVQGFAP-----RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
            FYN  +  +       + +  + GC+         VV+C +++  P    + L+F    T
Sbjct: 630  FYNQARRLSALPLFQNNAILANRGCK-------FMVVECGVLNCDPQENSLILTFRAAKT 682

Query: 526  RVSEDDL-------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 578
             V++          ++ GSL +  V  V  + + V  +     +  +   HL DH   AT
Sbjct: 683  SVADRGARDAQLKRIEAGSLEAVEVVAVAEDMLTVKFVESPLVQTELRAGHLTDHPSLAT 742

Query: 579  VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL--INSAQQLPSDASHIHPNSVVHGYVC 636
             +    K G + + + VL+     + +S K  L      + LP +   +    V   Y+ 
Sbjct: 743  ALCRTYKKGDKLEAV-VLEKRGRRVTISCKPQLKAQTKVESLPKELDDLKLGQVFPAYIR 801

Query: 637  NIIETGCFVRFLGRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 692
            ++++ GCF+  +  L+G  P      + VD  +A     ++  Q+V   + ++N E  R 
Sbjct: 802  SVLDYGCFIGTIHGLSGLVPLRQLAKRYVDNPKA----FFHPDQTVLVAVSEINKEQNRA 857

Query: 693  TLSLKQSCCSSTDA-SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 751
              S+K+    +     +MQ    L + +A     K   S  +    +  G  I   + E 
Sbjct: 858  VFSMKEDVIGAVAVVPYMQS---LAKDMARFAGIKD--SPGRRAAPYHHGQAISVLIQEI 912

Query: 752  NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 811
              FGVV + ++   +  F+T  Q  G   E G  +   +LD+   + ++D++LK   +  
Sbjct: 913  KPFGVVGTTKDGVPI--FVTKEQRQGIECEVGVELPGRVLDIDYEKGVLDVTLKPELVSA 970

Query: 812  FREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY 871
              +   + +  K KR           + V   VE+VK  + V+S PE   ++ Y     Y
Sbjct: 971  SSDNGKDSKTGKGKRSHPTKLPFAKKEEVQGRVELVKVTHAVVSGPE--RTLLYCPTQTY 1028

Query: 872  NTQKFPQKQFLNGQSVIATVMALPS------------SSTAGRLLLLLKAI--------- 910
            N ++ P K+F+ G     TV+++ +            +S   +L LL   +         
Sbjct: 1029 NDRREPFKRFVAGSKATVTVLSVGNPEFVVGQATVQWASQRSQLALLPLYLHFCMLIVRD 1088

Query: 911  ------SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
                   E+E ++S+ A       VG +V+AE+T+    +L+L+      GR+  TEV D
Sbjct: 1089 CFYGWKQESEPTTSELA-------VGQVVEAEVTKAGQTQLQLRLPEKRSGRVLATEVLD 1141

Query: 965  DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSE 1015
            +     +  F  +  G  +  RI+   ++   +         K  + E S+KPS+L   E
Sbjct: 1142 ENDTSAQP-FKAYHKGDKIQVRILGFRDQKTRRFMPITQKFLKRHVAECSLKPSVLAAKE 1200

Query: 1016 IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR 1075
            +    + E   V +GQ   G V +V      + ++ +++ ++ +++     ++ +  +++
Sbjct: 1201 LPP--MLEREAVEVGQERWGVVSEVGERCLWVLLAPNVRGRINLVNLGAAATDPKALKKQ 1258

Query: 1076 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1135
            F IG      ++ +++  KLL L              ++++++ Q  IH G +V   + +
Sbjct: 1259 FGIGMRHKFRIIIMSE--KLLEL--------------ELASESSQE-IHVGSVVSASLKR 1301

Query: 1136 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1195
            I++  G  ++ +G   +G V  T++ +   ++P    D  +      Y         +  
Sbjct: 1302 IVNRFG--IMHLGHGRFGAVDITDVDDKLHAEPFKTLDRSKV-----YRAVVIGGENLAA 1354

Query: 1196 ISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
                      + LSLR S ++G ++T +S L            ++ED+  + + +G V N
Sbjct: 1355 TGNMGSAIGDIRLSLRPSEVEGDAATKASVL------------RMEDVDTDQVHRGVVCN 1402

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
             T +G F+ LSR + A+V ++NLSD +V   +K F +G LV GR+++      R+E++LK
Sbjct: 1403 ATDEGVFVALSRNVTARVQIANLSDLFVRDIKKAFKVGTLVQGRIMA--KTDGRLEMSLK 1460

Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHV 1373
             SD    S + +  +  L  G  V G IKRVESYG+FI I+++ NL G+ H+SE ++  +
Sbjct: 1461 KSDV-DPSGTTLLRIDTLEQGQHVTGVIKRVESYGVFIVIDDSANLTGMAHISECADQRI 1519

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVG- 1432
            +++  +Y AG+ VK  +LKVD +K+RISLG+K SYF  D   L  + +E +DEA    G 
Sbjct: 1520 EDLNKLYSAGDAVKAVVLKVDVDKKRISLGIKPSYF--DDAGLPQAMDESADEASAADGD 1577

Query: 1433 ------SYNRSSLLENSSVAVQD 1449
                    +   +L+  +VA+Q+
Sbjct: 1578 ASGDESDADADDVLDTDAVALQE 1600


>gi|345324023|ref|XP_001512041.2| PREDICTED: protein RRP5 homolog [Ornithorhynchus anatinus]
          Length = 1838

 Score =  362 bits (930), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 362/1398 (25%), Positives = 639/1398 (45%), Gaps = 166/1398 (11%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLP--TIFHV 55
            L G V E N+ ++VI LP GLRG  +A   +D     L  ++E  E  ++++P   ++  
Sbjct: 86   LLGCVKESNKYEMVISLPNGLRGFVQATSISDTYTKKLAEQVEREEFLEDVMPLSALYLP 145

Query: 56   GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
            G LV C+V  ++  KK  GK+ I LSL    + +GLS  T+  GM+LT  V S EDHGY+
Sbjct: 146  GMLVRCVVNSIETTKK--GKQSIRLSLNPKEVNRGLSAGTLSPGMLLTGTVSSREDHGYL 203

Query: 116  LHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 170
            +  G+     FLPR    E     N G ++K G  L   V  +     +V LS     V+
Sbjct: 204  IDIGVRESKAFLPRKKAQEYISMRNKGSELKLGQYLWCYVEEVKGNGSIVRLSIGSAEVA 263

Query: 171  KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 230
              +  + +  ++D ++PG++V   +Q +  +G+ LSFL+ + G VD  HL          
Sbjct: 264  SALATEEQNWTLDNVLPGLVVKAVIQKVTPHGLSLSFLSIYRGLVDFLHLD-----PKKS 318

Query: 231  NDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRVDR 287
              Y   +KV A IL V   ++ V LTL P  LH   P S +    VG + +   V    +
Sbjct: 319  QSYFATQKVKACILSVHRQTKTVRLTLRPNFLHPGLPLSQLSTSLVGTVLENVPVQGFFK 378

Query: 288  GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 347
              G    +    +   A+     ++  +     +K+  G   + RI+    ++ L    L
Sbjct: 379  KAGATFKLKDGSL---AFARFKHLSNSKKSFNPEKFLPGKTHKCRIIDLSPMDDLVLLSL 435

Query: 348  KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
            K          + D++PG +V+GKV+A+  FG +V+    +K + PL H+++ ++  P K
Sbjct: 436  KEKIINAPFLQYRDLQPGQLVQGKVLALRPFGVLVEVTDSIKGVVPLLHLADVQLKHPEK 495

Query: 408  KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 465
            KF +G E+  RVL      K++ +T KKTLV S L +++SY  A  +L  HG+I+KI + 
Sbjct: 496  KFHLGDEIKGRVLSCIPSMKKLVLTLKKTLVNSDLPVITSYRAAKPQLQAHGFISKITEV 555

Query: 466  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
            GC V FYN V+G  P+  LG+D   +  S++++GQV+K  +++  P   R+ LS+  KP 
Sbjct: 556  GCIVGFYNNVRGLVPKGRLGVDCSEDLKSVFYLGQVIKVTVVNCSPNQERLLLSY--KPM 613

Query: 526  RVSED--DLVKLGSLVSGVVDVVTPNAVVVYV-IAKGYSKGTIPTEHLADHLEHATVMKS 582
              SE       LG +V   V VV    + + V I  G     +P  HL+DH+ ++ ++  
Sbjct: 614  MDSEPAGSAEMLGQMVD--VKVVKKTDMGLQVSILPGNVPAFLPKIHLSDHVSNSQLLWH 671

Query: 583  VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIE 640
             ++P     ++L L ++    +LS K +LI +A+  Q+      I P  +  GYV +I++
Sbjct: 672  WLQPNDILHRVLCLGSKRGRNILSRKPALICAAEEGQVARYFFDIQPGMLFTGYVTSIMD 731

Query: 641  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
             G FV      TG +PR    D         Y VGQ+V + + DV+ E  R+ LSL+ S 
Sbjct: 732  YGVFVELPFGFTGLSPRVAISDKFVTKTQDHYTVGQTVTALVTDVDEEKQRMLLSLRLSD 791

Query: 701  CSSTDASFMQEHFLLE-----EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 755
            C+  D + +    L +     + + +L  ++ N + ++++     G  +   V E  + G
Sbjct: 792  CNLRDPATVGFSLLCQCLEELQGVRLLMKNQDN-TLIQFLASLTPGLRLNLIVQEVLEGG 850

Query: 756  -VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR-FR 813
             V  S      +    + + + G  +E    ++  +L V   +  V +SL+   ++R F+
Sbjct: 851  SVTFSGGLGPGLVLSASKYHVGGEKLEPLQRVKTVVLHVDTLKLKVHVSLRPELLNRKFK 910

Query: 814  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN- 872
            +   N Q                     A+V+ +++ +++ SL E    + +   S +N 
Sbjct: 911  KVKLNDQHM-------------------AVVQHLEKEFVIASLVETGQLVAFPIASHFND 951

Query: 873  TQKFPQKQFLNGQSVIATV---------MALPSSSTAGRLLLL-----LKAISETE---- 914
            T +F  ++   GQ V  T+         + L +   A + ++      L+   E +    
Sbjct: 952  TFRFDSEKLQLGQGVCLTLRTTEPGDFGLLLATKEPASKRVVPKPQEKLEPTGEPQEKVG 1011

Query: 915  --------TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
                       ++ A KK ++ +G LV+  +  +KP  + +    G  G IH++++ D+ 
Sbjct: 1012 PTRKPQKKVGPTREAVKKHAFSIGELVKGIVRSVKPTYIIVTLESGITGFIHVSQILDE- 1070

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNK------PDMKKSFLW---ELSIKPSMLTVSEIG 1017
              +     +  K  + +TAR+I   +       P     F+    ELSI+PS L  S   
Sbjct: 1071 VPLGTCPTTRLKAKKRITARVIGGKDMRTRRFLPATHSRFIRTVPELSIRPSELKASSTA 1130

Query: 1018 -------SKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQL--FILDSAYEP 1066
                     L F   +V  G++V  +V  Y +  +   + +S  +  ++   +L  +Y+ 
Sbjct: 1131 LNTHSYSHALKFRGYNV--GKQVICFVKKYNIVEKCLEVEVSPVISGKVPHLLLSLSYK- 1187

Query: 1067 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH-- 1124
              L+  +++F +G+A++  V+  +                    +         T IH  
Sbjct: 1188 -VLRHPEKKFKVGQALSAIVVGTD--------------------SSRSLLILSLTGIHKL 1226

Query: 1125 -EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
             +G I  G++ K++  V GL V++     G+V    ++           D     PL G+
Sbjct: 1227 KKGTITMGKVMKVIPDV-GLTVRLPFECAGQVSIFHIQ-----------DSYSAVPLEGF 1274

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
               + VKC VL    + +GT  +ELSLR S    + +N  +   D     + +  ++D+ 
Sbjct: 1275 KPEKIVKCCVL----STKGTM-MELSLRLS---RTKSNYQEKVED-----REVTSLDDVK 1321

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVL 1300
               +++GYVK+V  +G FI +S  +  +V    +S   V + +   K    G L+  +VL
Sbjct: 1322 EGELLRGYVKSVEHQGVFISISSTVVGQVQYQCVSQYLVSNQKLYNKYLRKGMLLTTKVL 1381

Query: 1301 SVEPLSKRVEVTLKTSDS 1318
            SV      VE++L   D+
Sbjct: 1382 SVNKEQNLVELSLLPQDT 1399



 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 137/284 (48%), Positives = 193/284 (67%), Gaps = 4/284 (1%)

Query: 1516 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1574
            ++ E+E+   E  L++    P T D+F+RLV SSPNSS +W++YMAF L   +++KAR++
Sbjct: 1549 QKAEKELSRIEATLMDPSRQPETADDFDRLVLSSPNSSILWLQYMAFHLHATEIDKARAV 1608

Query: 1575 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1634
            AERAL+ I+ REE EK N+WVA  NLEN YG+  EE++ KVF+RA+QY D  KV L L  
Sbjct: 1609 AERALKIISFREEQEKFNVWVALLNLENMYGS--EESLTKVFERAVQYNDSLKVFLQLAD 1666

Query: 1635 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHK 1693
            +Y ++E+   A+EL  KM+K+F+    VWL+    LL++ Q E    ++ RAL  LP   
Sbjct: 1667 IYAKSEKYTEAEELYGKMLKRFRQEKSVWLKYSAFLLRRGQFEANHQLLHRALKCLPDKD 1726

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753
            H+  IS+ A LEF  G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1727 HVDVISKFAQLEFHLGDAERAKAIFESTLSNYPKRTDIWSVYIDMTIKHGSQKEVRDIFE 1786

Query: 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            R I LSL  K+MKF FK+YL+YEK  G  E ++ VK+KA+EYVE
Sbjct: 1787 RVIHLSLAAKRMKFFFKRYLDYEKQHGSPETVQAVKEKAVEYVE 1830



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 150/353 (42%), Gaps = 67/353 (18%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG--------DIVGG 1131
            + V   +LS++++ K +RL LRP                   F+H G         +VG 
Sbjct: 325  QKVKACILSVHRQTKTVRLTLRP------------------NFLHPGLPLSQLSTSLVGT 366

Query: 1132 RISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1188
             +  +   V G   + G       G + F   K++  S+    ++  +F P      G+ 
Sbjct: 367  VLENV--PVQGFFKKAGATFKLKDGSLAFARFKHL--SNSKKSFNPEKFLP------GKT 416

Query: 1189 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1248
             KC+++++S        V LSL+  +              ++ P     +  DL P  +V
Sbjct: 417  HKCRIIDLSPM---DDLVLLSLKEKI--------------INAP---FLQYRDLQPGQLV 456

Query: 1249 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1308
            QG V  +   G  + ++  +   V L +L+D  ++ PEK+F +G  + GRVLS  P  K+
Sbjct: 457  QGKVLALRPFGVLVEVTDSIKGVVPLLHLADVQLKHPEKKFHLGDEIKGRVLSCIPSMKK 516

Query: 1309 VEVTLKTSDSRTASQSEINNLSNLHVGDIVI---GQIKRVESYGLFITIENTNLVGLCHV 1365
            + +TLK    +T   S++  +++       +   G I ++   G  +   N N+ GL   
Sbjct: 517  LVLTLK----KTLVNSDLPVITSYRAAKPQLQAHGFISKITEVGCIVGFYN-NVRGLVPK 571

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
              L  D  +++++++  G+ +KV ++     + R+ L  K       A + +M
Sbjct: 572  GRLGVDCSEDLKSVFYLGQVIKVTVVNCSPNQERLLLSYKPMMDSEPAGSAEM 624



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 37/247 (14%)

Query: 871  YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 930
            Y   + P+K+F  GQ++ A V+   SS +                +   + KK      G
Sbjct: 1186 YKVLRHPEKKFKVGQALSAIVVGTDSSRSL----------LILSLTGIHKLKK------G 1229

Query: 931  SLVQAEITEIKP---LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
            ++   ++ ++ P   L +RL F     G++ I  + D  S V       FK  + V   +
Sbjct: 1230 TITMGKVMKVIPDVGLTVRLPFECA--GQVSIFHIQDSYSAVP---LEGFKPEKIVKCCV 1284

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNE 1043
            ++        K  + ELS++ S  T S    K+   E     DV  G+ + GYV  V+++
Sbjct: 1285 LS-------TKGTMMELSLRLSR-TKSNYQEKVEDREVTSLDDVKEGELLRGYVKSVEHQ 1336

Query: 1044 WALLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1102
               ++IS  +  Q+ +   S Y  S  + + +    G  +T  VLS+NKE+ L+ L L P
Sbjct: 1337 GVFISISSTVVGQVQYQCVSQYLVSNQKLYNKYLRKGMLLTTKVLSVNKEQNLVELSLLP 1396

Query: 1103 FQDGISD 1109
               G  D
Sbjct: 1397 QDTGKQD 1403


>gi|302308948|ref|NP_986113.2| AFR566Cp [Ashbya gossypii ATCC 10895]
 gi|299790870|gb|AAS53937.2| AFR566Cp [Ashbya gossypii ATCC 10895]
          Length = 1715

 Score =  362 bits (930), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 363/1352 (26%), Positives = 631/1352 (46%), Gaps = 199/1352 (14%)

Query: 520  FMMKPTRVSEDDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HL 574
             + KP   S D  + +G+++SG  +  V+ N + + +   G  K  +   H++D    + 
Sbjct: 478  LLAKPYLRSAD--IPVGTILSGCEITAVSGNGIELSLF-DGQFKAFVAPLHISDIRLVYP 534

Query: 575  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ---LPSDASHIHPNSVV 631
            E    + S +K      ++L +DN+   + ++ K SL+++      L SD   I   +  
Sbjct: 535  ERKFKIGSKVK-----GRVLHVDNKG-RVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEE 588

Query: 632  HGYVCNIIET----GCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDV 685
             G     +E+    GC V FLG L  F P  +  +   QRA       +GQ+V   +L+ 
Sbjct: 589  DGKTLATVESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRA--QDHLRLGQTVVVKVLEH 646

Query: 686  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVI 744
             ++  ++ ++ K    SS D+         ++K A              +   ++G S++
Sbjct: 647  VAKQSKVIVTRK---VSSEDSE--------KQKAA--------------INDLVVGRSIV 681

Query: 745  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVA 794
            +  V E     VVV   +   + G I    L+ + +E           GS +Q  ++D  
Sbjct: 682  DVTVVEKTKDSVVVELNDVG-LRGVIYVGHLSDSKLEQNRALLKKLRIGSSLQGVVMDKD 740

Query: 795  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKE 849
               R+ ++S K   I   ++A+ +         ++   +  +H  V +I +         
Sbjct: 741  VKTRVFNMSCKKSLI---KDASKDILPLTFVDIKDKDPNTPMHGYVKSISDRGIFVAFTG 797

Query: 850  NYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 909
             ++ L LP Y       +    +   F  K+F   QSV  TV  L +     R LL +  
Sbjct: 798  KFVGLVLPSY-------ATESRDVDIF--KKFYINQSV--TVYLLRTDEENERFLLTM-- 844

Query: 910  ISETETSSSKR---------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 954
             S  +TS+ K                 K  S Y VG++ +A +  +K  +L +      H
Sbjct: 845  -SPPQTSNKKEDSNHDVAAVNPVDASVKIISQYSVGTVTKARVKSVKKTQLNVVLADNLH 903

Query: 955  GRIHITEVNDDKSNVVENL---FSNFKIGQTVTARII----AKSNK--PDMKKS---FLW 1002
            GR+  +E+ D    + EN     + FK G  +  ++I    +K++K  P   ++    + 
Sbjct: 904  GRVDASEIYDTFEEI-ENPKEPLAKFKSGDVIDVKVIGFHDSKTHKFLPISHRTGVNTVL 962

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            ELS K S L     G+    E   +  G  + G+V      +  LT+S  LKA++   + 
Sbjct: 963  ELSAKKSALK----GAYQPIEFSGMKNGDELIGFVNNFAKGFIWLTLSPALKAKIPDFEL 1018

Query: 1063 AYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1121
            + + S         F +G A+   V  ++   K++ +  R           DI +     
Sbjct: 1019 SDDGSVFTGNLDESFPLGCALKVKVKELDPAHKIVSVSARKHA------ITDIKD----- 1067

Query: 1122 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
             I   D +  RI K+      L++ +G  L G    T+  N           E      S
Sbjct: 1068 -IKVADKLPARIVKVADSY--LLLDLGNRLTGVAFVTDALN-----------EFSLSLRS 1113

Query: 1182 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
             Y++  G  +   V+ +    +    + LSLR+                 D   +++   
Sbjct: 1114 VYEDKIGSMILASVVGVDVENK---KINLSLRTE----------------DATDRYILSH 1154

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            +DL    +V+G++K+VT KG F+ LSR L A V +S L+D Y++  +K +   + + G+V
Sbjct: 1155 KDLKQGDVVRGFIKSVTDKGIFVYLSRTLQAFVPVSKLTDAYIKEWKKFYKTMQPITGKV 1214

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-N 1358
            ++ E  S R+ +T+K S+        + + ++L  GDI  G +K V  +G+F+ + NT N
Sbjct: 1215 VNCESDS-RILLTMKESEV-NGELKILKSYADLKSGDIFDGSVKNVTDFGVFVKLHNTLN 1272

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H SE+S+  +D++  ++  G+KVK  ILK + EK ++SLG+K+SYF+   D+   
Sbjct: 1273 VTGLAHKSEISDSKIDDLSLLFGEGDKVKAIILKTNPEKNQVSLGLKASYFQKAHDD--- 1329

Query: 1419 SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNL 1478
              E E  E+IEE      +    +   A++D++ E             + A  P  E + 
Sbjct: 1330 EDEAEPAESIEEANGEEINGEASDEDEAMEDIEYE------------HTPADAPSHETSS 1377

Query: 1479 DDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK----------KKEKEEREQEIRAAEER 1528
               +  +  G+S + G    A  +D+  NR              K+ ++ ++   A  +R
Sbjct: 1378 KAHKEAVPTGLSLSAGFDWTASILDQ--NREDNEESSEDEDFTSKKAKKNKKRHAAVIDR 1435

Query: 1529 LLEKD--APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1586
             ++ +  AP +  +FERL+  +PNSS +W+ YMAF L +++VEKAR +AERAL+TI+ RE
Sbjct: 1436 TVDINTKAPESVGDFERLIMGNPNSSVIWMNYMAFQLQLSEVEKARELAERALKTISFRE 1495

Query: 1587 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1646
            E+EKLNIW+A  NLEN +G   +E +  VF+RA QY D   +H+ L+ +Y  + ++  A 
Sbjct: 1496 EHEKLNIWIAMLNLENTFGT--DETLEDVFRRACQYMDAYTIHMKLISIYAMSSKDDKAV 1553

Query: 1647 ELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAIL 1704
            EL     KKF   +  +W+   + LL  +Q +  +AV+ +AL SLPR  HI  + + A L
Sbjct: 1554 ELYKAAAKKFGSENVSLWVSWGEFLLTHEQPDEARAVLAQALKSLPRRSHIDVVRKFAQL 1613

Query: 1705 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1764
            EF  G  ++GR++FEG+L++ PKR D+W++YLDQEI+  +      LFER +   L  K+
Sbjct: 1614 EFAKGDPEQGRALFEGLLADAPKRIDIWNVYLDQEIKSSNRARADALFERVLVAKLSRKQ 1673

Query: 1765 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
             KF F K+L+  +S  ++  +EY+K +A +YV
Sbjct: 1674 AKFFFNKWLQLAESTDDQRGVEYIKARAADYV 1705



 Score =  157 bits (396), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 265/1183 (22%), Positives = 498/1183 (42%), Gaps = 163/1183 (13%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRGLARAADALDPI------LDNEIEANEDNL-------- 48
            L G +  VN  DL I L  GLRG     +   P       LD  +++  ++         
Sbjct: 116  LLGQLCGVNRTDLCIALTDGLRGYVPLTNISAPFTSLLEQLDQSMDSGSEDEDDDSDDEQ 175

Query: 49   ---------LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSL 93
                     LP +   F +GQ + C+V++   LD  KK+    +I LS+  S +      
Sbjct: 176  RDKPHTITELPELSKYFTLGQWLRCVVVKNSALDSQKKK--NSRIELSIEPSKV-NLFET 232

Query: 94   ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRS 152
            E + +   +   VKSIEDHG +L  G+   TGF+   +L++    DV PG + L  + + 
Sbjct: 233  EDLAKHTTVQCAVKSIEDHGALLDLGVQDVTGFISNKDLSKMG--DVMPGSVFLANITKR 290

Query: 153  IDRTRKVVY-LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 211
             DRT  V +  ++    VS+         S+D ++PG  +    + I  +G++       
Sbjct: 291  GDRTATVNFEFTAKNSKVSQIS-------SVDAVIPGHTIDFLCEKITNHGIIGKAF--- 340

Query: 212  TGTVDIFHLQN---TFPTTNWKNDYNQHKKVNARILFVDPTSRAVG----------LTLN 258
             G +D F  ++    F  T+ K+ Y     +  RI+    T +             L+L 
Sbjct: 341  -GVLDGFLSESQARVFSVTDMKHKYAIGSNIKVRIIATLRTKQGNKVILVSALPHILSLE 399

Query: 259  PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD--VAEEEV 316
              LL   A  +   VG ++D  K++  D              S   YV++SD  + +  +
Sbjct: 400  RNLLETEAMHA-FPVGYVFDNCKLLGRD--------------SQYLYVSLSDERIGQIHI 444

Query: 317  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV 375
             K      +   V+ R+ G+  ++G                  +D+  G ++ G ++ AV
Sbjct: 445  SKAGDAITQ-EAVKARVTGYNTVDGYYQLTSDPKLLAKPYLRSADIPVGTILSGCEITAV 503

Query: 376  DSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKK 433
               G  +  F G  KA     H+S+  +V P +KFK+G+++  RVL V +K R+ VT KK
Sbjct: 504  SGNGIELSLFDGQFKAFVAPLHISDIRLVYPERKFKIGSKVKGRVLHVDNKGRVYVTLKK 563

Query: 434  TLVK---SKLAILSSYAE----ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 486
            +LV    S + ++S + +    A +   T   +   +  GC V F   ++ F P  E+  
Sbjct: 564  SLVSANDSDIPLVSDFEQIAKLAEEDGKTLATVESFKPSGCVVTFLGNLKAFLPNKEISE 623

Query: 487  DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG--VVD 544
                       +GQ V  +++  +    ++ ++  +  +  SE     +  LV G  +VD
Sbjct: 624  AFVQRAQDHLRLGQTVVVKVLEHVAKQSKVIVTRKVS-SEDSEKQKAAINDLVVGRSIVD 682

Query: 545  VV----TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE 599
            V     T ++VVV +   G  +G I   HL+D  LE    +   ++ G    Q +V+D +
Sbjct: 683  VTVVEKTKDSVVVELNDVGL-RGVIYVGHLSDSKLEQNRALLKKLRIGSSL-QGVVMDKD 740

Query: 600  SSNLL--LSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
                +  +S K SLI  A +  LP    D     PN+ +HGYV +I + G FV F G+  
Sbjct: 741  VKTRVFNMSCKKSLIKDASKDILPLTFVDIKDKDPNTPMHGYVKSISDRGIFVAFTGKFV 800

Query: 653  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASFMQ 710
            G    S A + +  D+ K +Y+ QSV   +L  + E  R  +T+S  Q+     D++   
Sbjct: 801  GLVLPSYATESRDVDIFKKFYINQSVTVYLLRTDEENERFLLTMSPPQTSNKKEDSN--- 857

Query: 711  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS---- 764
                    +A +       + +K +  + +G+V + +V   +     VV++   H     
Sbjct: 858  ------HDVAAVNPVD---ASVKIISQYSVGTVTKARVKSVKKTQLNVVLADNLHGRVDA 908

Query: 765  ----DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSN 818
                D +  I + +   A  +SG VI   ++    +K  + + +S +T  ++   E ++ 
Sbjct: 909  SEIYDTFEEIENPKEPLAKFKSGDVIDVKVIGFHDSKTHKFLPISHRT-GVNTVLELSAK 967

Query: 819  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQ 878
            + A K           G +Q +     +   + L+  +  +     + ++S     K P 
Sbjct: 968  KSALK-----------GAYQPIE-FSGMKNGDELIGFVNNFAKGFIWLTLSPALKAKIPD 1015

Query: 879  KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSL-----V 933
             +  +  SV    +   S      L + +K +       S  A+K +  D+  +     +
Sbjct: 1016 FELSDDGSVFTGNLD-ESFPLGCALKVKVKELDPAHKIVSVSARKHAITDIKDIKVADKL 1074

Query: 934  QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 993
             A I ++    L L  G    G   +T+  ++ S  + +++ + KIG  + A ++     
Sbjct: 1075 PARIVKVADSYLLLDLGNRLTGVAFVTDALNEFSLSLRSVYED-KIGSMILASVVG---- 1129

Query: 994  PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHL 1053
             D++   +  LS++    T      + +    D+  G  V G++  V ++   + +SR L
Sbjct: 1130 VDVENKKI-NLSLRTEDAT-----DRYILSHKDLKQGDVVRGFIKSVTDKGIFVYLSRTL 1183

Query: 1054 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1096
            +A  F+  S    + ++E+++ +   + +TG V++   + ++L
Sbjct: 1184 QA--FVPVSKLTDAYIKEWKKFYKTMQPITGKVVNCESDSRIL 1224


>gi|403417509|emb|CCM04209.1| predicted protein [Fibroporia radiculosa]
          Length = 1465

 Score =  362 bits (928), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 336/1241 (27%), Positives = 593/1241 (47%), Gaps = 149/1241 (12%)

Query: 610  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 669
            SL+ ++    ++AS I P + V   V  ++  G  ++ +G   G   +   + G      
Sbjct: 323  SLMTASLSEVTNASSILPGTQVQSLVTAVLPDGLNLQIMGYFGGTIDQFHLLPGHP---E 379

Query: 670  KTYYVGQSVRSNIL-DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
            + Y +GQ +++ +L  + +   +  LSL                 + ++   M     HN
Sbjct: 380  RNYKMGQKLKARVLYAITATPPKFALSLASHVLK----------LVPKDTAGMDDGLNHN 429

Query: 729  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------ 782
              E+ +  G I+ +V   +V   ++ G+VV  E  S V GF+     +   V +      
Sbjct: 430  LDEI-YPTGSILDAVKVIRVE--SERGLVV--EVASGVEGFVHISHTSDEHVPTLSSSSG 484

Query: 783  ----GSVIQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQ----KKKRKREASKD 833
                G+V +A +      + L+ LSL+ +V   +F +    +  +      KR  +++  
Sbjct: 485  PWKVGTVHRARVTGHFHFDGLLQLSLRPSVLEQKFLQVGEVQVGEVLKGAVKRLTDSAMF 544

Query: 834  LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 893
            + +  +V+ ++            P  NH   YA +      K PQ++F  G S+   V+ 
Sbjct: 545  VSISGSVDGVI-----------WP--NH---YADIQ----LKQPQRRFKPGGSIKCRVLV 584

Query: 894  LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 953
            + +     R  ++L A      S+     K     VG +  A +       L+++F    
Sbjct: 585  VDTQ----RQRIVLTAKKTLLESALPIISKFEDARVGLVTHAVVFRASDKSLQVEF---- 636

Query: 954  HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML-T 1012
            +  +       + S     L + F IG+ V  RI+  S  P+  +         P+ L +
Sbjct: 637  YNNVKAVVPAGEASETAVGLSTAFPIGKPVQVRIM--SIDPETSRIVASIRQTAPNYLAS 694

Query: 1013 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1072
            +  I S        + IG  V G + +V NE A++T+       +  L++      +   
Sbjct: 695  IENIAS--------IGIGDTVEGDITEVQNEKAIVTLRPSQVRTVISLNNLANRRGVSVA 746

Query: 1073 QRR--FHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1129
            Q R    +G+ +   V+ S N E+  +R+  +P +     + + +    +Q     G IV
Sbjct: 747  QLRASLQVGEKLQDLVVVSRNPERGFVRIATKPKEKITLAQKIPLDLATIQI----GQIV 802

Query: 1130 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1189
             GR+  +  G  G +V++   + G +H T++ +         ++ G+  P + Y     +
Sbjct: 803  QGRV--LHHGRRGALVKLTNTVSGTLHPTDVDD--------DFESGKAFPPADY----IL 848

Query: 1190 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNMI 1247
            K  V+ + +  R     +L+L        ST  S L    D P     +  I DL     
Sbjct: 849  KAVVIAVDKDRR-----QLTL--------STRPSRLQPRRDEPVIDPEIASIGDLKEGET 895

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            ++G++K V   G F+ L R++DA+V +  L D YV+  +  F   +LV GR+L V+   K
Sbjct: 896  IRGFIKQVAEHGIFVTLGREIDARVQIKELFDEYVKDWKSRFVAHQLVRGRILRVDIAKK 955

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
            +VE+T ++ D +T S +    L++L  G  V G IKR E YGLFI IE + L GLCH SE
Sbjct: 956  QVEMTFRSGDLKTNSLT----LADLSEGQKVDGCIKRTEEYGLFIQIEGSKLTGLCHKSE 1011

Query: 1368 LSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEE-- 1422
            LS++   N+      +R G++VK  IL +D+EKRRISLG+K SYF +D  + Q +++   
Sbjct: 1012 LSDNKDANVTLALRSFREGDQVKAIILSIDEEKRRISLGLKPSYFVDD--DFQSNNDVDD 1069

Query: 1423 ---------------ESDEAIEEVGSY--NRSSLLENSSVAVQDMDM----ESEDGGSLV 1461
                           E  +  ++  S+  N+  +  +      ++DM    +++   S  
Sbjct: 1070 ENEESSEEDNLLGIVEGSQGDDDSRSHQDNQDDMDADVIDDSMNIDMSIQLDADQSPSDD 1129

Query: 1462 LAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE 1521
                E   SVP L +     Q  + + +  +      ++  D ++++  +K++++E EQ+
Sbjct: 1130 RTDKELHISVPSLNLQ-QGFQWSVASNVEVDDDMQPSSEDEDVEDSQQKRKRKRKEIEQD 1188

Query: 1522 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1581
            + A     +    P +  +FER++  SPNSS++WI+YM+F L +++V+KAR IA+RAL+T
Sbjct: 1189 LTAD----MHTKVPESNTDFERVLLGSPNSSYLWIQYMSFQLQISEVDKAREIAKRALRT 1244

Query: 1582 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1641
            IN REE EK+NIW+A  NLEN YG   EE +   F+ A ++ D + +HL L  + +++ +
Sbjct: 1245 INFREEQEKMNIWIALLNLENTYGT--EETLETTFRDAARHNDSETIHLRLASILDQSGK 1302

Query: 1642 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQ 1700
               A+E   +  KKF  S  VW    +  L+  + E  + ++ R+L SL +H H+K IS+
Sbjct: 1303 TDRAEEQYQRTCKKFGQSSDVWTLCGEHYLRHGKLEEARKLLPRSLQSLEKHDHLKTISK 1362

Query: 1701 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1760
             A LE+K G  +RG+++FEGI+  + KR D+WSIY+D E   GD+  +R +F+R +++ +
Sbjct: 1363 FAQLEYKLGDPERGKTLFEGIVDSHSKRWDMWSIYIDMEAGQGDMMSLRNIFDRVLAIKM 1422

Query: 1761 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
               K K  FKK+LE E+ +G+EE    VK KA+E+ +   A
Sbjct: 1423 TSHKAKSFFKKWLELERRMGDEEGASAVKAKAVEWTQRASA 1463



 Score =  178 bits (451), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 181/716 (25%), Positives = 311/716 (43%), Gaps = 74/716 (10%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE------------ 45
           MK+ G V  V    L+I LP  L     +   +  L  +L+   E ++            
Sbjct: 120 MKILGQVVSVESLALIISLPNQLFAHVPITEISTQLTALLEEMGEVDDASSSDEEEGSGT 179

Query: 46  --DNLLPTIF-------HVGQLVSCIVLQLDDDKKEIGK---------RKIWLSLRLSLL 87
              + +P +F       +V  +VS I L    D   +G+         R+I LSL    +
Sbjct: 180 GASSSIPELFQMFRPGSYVRAIVSAIHLPGATDTTPLGRIRDEAHKASRRIELSLVPEKV 239

Query: 88  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGL 144
             G+S   ++ G  ++A VKS EDHGYIL  G+    GFL   +  +    +   ++ G 
Sbjct: 240 NAGVSKADLRAGFTMSAAVKSKEDHGYILDLGVSDINGFLSFKDAKQGPFENPERIRVGH 299

Query: 145 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
           LL   +       +    S +  ++      ++   S   ++PG  V + V ++L +G+ 
Sbjct: 300 LLDISISKTTANGRTCTCSVNASSLMTASLSEVTNASS--ILPGTQVQSLVTAVLPDGLN 357

Query: 205 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDPTSRAVGLTLNPYLLH 263
           L  + YF GT+D FHL    P  N    Y   +K+ AR+L+ +  T     L+L  ++L 
Sbjct: 358 LQIMGYFGGTIDQFHLLPGHPERN----YKMGQKLKARVLYAITATPPKFALSLASHVLK 413

Query: 264 -------------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD 310
                        N         G I D  KV+RV+   GL++++ S       +V IS 
Sbjct: 414 LVPKDTAGMDDGLNHNLDEIYPTGSILDAVKVIRVESERGLVVEVAS---GVEGFVHISH 470

Query: 311 VAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV 367
            ++E V  L      +K G+  R R+ G  H +GL    L+ S  E       +V+ G V
Sbjct: 471 TSDEHVPTLSSSSGPWKVGTVHRARVTGHFHFDGLLQLSLRPSVLEQKFLQVGEVQVGEV 530

Query: 368 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--K 425
           +KG V  +      V   G V  +    H ++ ++ +P ++FK G  +  RVL V +  +
Sbjct: 531 LKGAVKRLTDSAMFVSISGSVDGVIWPNHYADIQLKQPQRRFKPGGSIKCRVLVVDTQRQ 590

Query: 426 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 485
           RI +T KKTL++S L I+S + +A   L+TH  + +       V FYN V+   P  E  
Sbjct: 591 RIVLTAKKTLLESALPIISKFEDARVGLVTHAVVFRASDKSLQVEFYNNVKAVVPAGEAS 650

Query: 486 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK---LGSLVSG 541
            +     S+ + +G+ V+ RIMS  P + RI  S     P  ++  + +    +G  V G
Sbjct: 651 -ETAVGLSTAFPIGKPVQVRIMSIDPETSRIVASIRQTAPNYLASIENIASIGIGDTVEG 709

Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLLVL--DN 598
            +  V  N   +  +     +  I   +LA+    +   +++ ++ G +   L+V+  + 
Sbjct: 710 DITEVQ-NEKAIVTLRPSQVRTVISLNNLANRRGVSVAQLRASLQVGEKLQDLVVVSRNP 768

Query: 599 ESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
           E   + ++ K    I  AQ++P D + I    +V G V +    G  V+    ++G
Sbjct: 769 ERGFVRIATKPKEKITLAQKIPLDLATIQIGQIVQGRVLHHGRRGALVKLTNTVSG 824



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 185/814 (22%), Positives = 322/814 (39%), Gaps = 135/814 (16%)

Query: 343  ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ----FPGGVKALCPLPHMS 398
            A+ ++ AS  E  V   S + PG  V+  V AV   G  +Q    F G +     LP   
Sbjct: 321  ASSLMTASLSE--VTNASSILPGTQVQSLVTAVLPDGLNLQIMGYFGGTIDQFHLLPG-- 376

Query: 399  EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLIT 455
                  P + +K+G +L  RVL      IT T  K   +L    L ++       D  + 
Sbjct: 377  -----HPERNYKMGQKLKARVLYA----ITATPPKFALSLASHVLKLVPKDTAGMDDGLN 427

Query: 456  HGW--------------ITKIE-KHGCFVRFYNGVQGFAPRSELGLD--PGCEPSS-MYH 497
            H                + ++E + G  V   +GV+GF   S    +  P    SS  + 
Sbjct: 428  HNLDEIYPTGSILDAVKVIRVESERGLVVEVASGVEGFVHISHTSDEHVPTLSSSSGPWK 487

Query: 498  VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVV 553
            VG V + R+         + LS  ++P+ + +  L    V++G ++ G V  +T +A+ V
Sbjct: 488  VGTVHRARVTGHFHFDGLLQLS--LRPSVLEQKFLQVGEVQVGEVLKGAVKRLTDSAMFV 545

Query: 554  YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 611
             +   G   G I   H AD  L+     +   KPG     ++LV+D +   ++L+AK +L
Sbjct: 546  SI--SGSVDGVIWPNHYADIQLKQP---QRRFKPGGSIKCRVLVVDTQRQRIVLTAKKTL 600

Query: 612  INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 671
            + SA  + S         V H  V    +    V F   +    P  +A +     LS  
Sbjct: 601  LESALPIISKFEDARVGLVTHAVVFRASDKSLQVEFYNNVKAVVPAGEASETA-VGLSTA 659

Query: 672  YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 731
            + +G+ V+  I+ ++ ET RI  S++Q+  +         +    E IA +         
Sbjct: 660  FPIGKPVQVRIMSIDPETSRIVASIRQTAPN---------YLASIENIASIG-------- 702

Query: 732  LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL 791
                    IG  +EG + E  +   +V+    S V   I+ + LA     S + ++A++ 
Sbjct: 703  --------IGDTVEGDITEVQNEKAIVTLRP-SQVRTVISLNNLANRRGVSVAQLRASL- 752

Query: 792  DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIV---- 847
                 E+L DL    V + R  E    R A K K K   ++ + +      I +IV    
Sbjct: 753  --QVGEKLQDL----VVVSRNPERGFVRIATKPKEKITLAQKIPLDLATIQIGQIVQGRV 806

Query: 848  ----KENYLVLSLPEYNHSIGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAG 901
                +   LV      + ++    V D   + + FP   ++    + A V+A+       
Sbjct: 807  LHHGRRGALVKLTNTVSGTLHPTDVDDDFESGKAFPPADYI----LKAVVIAVDKDR--- 859

Query: 902  RLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE-----ITEIKPLELRLKFGIGFHGR 956
            R L L    S  +    +         +G L + E     I ++    + +  G     R
Sbjct: 860  RQLTLSTRPSRLQPRRDEPVIDPEIASIGDLKEGETIRGFIKQVAEHGIFVTLGREIDAR 919

Query: 957  IHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEI 1016
            + I E+ D+    V++  S F   Q V  RI+    + D+ K  + E++ +   L  + +
Sbjct: 920  VQIKELFDE---YVKDWKSRFVAHQLVRGRIL----RVDIAKKQV-EMTFRSGDLKTNSL 971

Query: 1017 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ--- 1073
                     D+S GQ+V G + + + E+ L      ++ +   L      SEL + +   
Sbjct: 972  TL------ADLSEGQKVDGCIKRTE-EYGLF-----IQIEGSKLTGLCHKSELSDNKDAN 1019

Query: 1074 -----RRFHIGKAVTGHVLSINKEKKLLRLVLRP 1102
                 R F  G  V   +LSI++EK+ + L L+P
Sbjct: 1020 VTLALRSFREGDQVKAIILSIDEEKRRISLGLKP 1053



 Score = 44.3 bits (103), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 121/278 (43%), Gaps = 37/278 (13%)

Query: 75   KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG--------LPSFTGF 126
            K KI L+ ++ L      L T+Q G ++          G +LH G          + +G 
Sbjct: 780  KEKITLAQKIPL-----DLATIQIGQIV---------QGRVLHHGRRGALVKLTNTVSGT 825

Query: 127  LPRNNLAEN--SGIDVKPG-LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK---DLKGI 180
            L   ++ ++  SG    P   +L+ VV ++D+ R+ + LS+ P  +     +   D +  
Sbjct: 826  LHPTDVDDDFESGKAFPPADYILKAVVIAVDKDRRQLTLSTRPSRLQPRRDEPVIDPEIA 885

Query: 181  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
            SI  L  G  +   ++ + E+G+ ++        V I  L + +   +WK+ +  H+ V 
Sbjct: 886  SIGDLKEGETIRGFIKQVAEHGIFVTLGREIDARVQIKELFDEY-VKDWKSRFVAHQLVR 944

Query: 241  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKV---VRVDRGLGLLLDIPS 297
             RIL VD   + V +T     L   +    + + D+ +  KV   ++     GL + I  
Sbjct: 945  GRILRVDIAKKQVEMTFRSGDLKTNS----LTLADLSEGQKVDGCIKRTEEYGLFIQIEG 1000

Query: 298  TPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRIL 334
            + ++   + + +SD  +  V    + ++EG  V+  IL
Sbjct: 1001 SKLTGLCHKSELSDNKDANVTLALRSFREGDQVKAIIL 1038


>gi|452986595|gb|EME86351.1| hypothetical protein MYCFIDRAFT_45277 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1795

 Score =  361 bits (927), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 401/1548 (25%), Positives = 701/1548 (45%), Gaps = 222/1548 (14%)

Query: 364  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV- 422
            PG +    V  V   G   +  G +       H +   +    KKFK+G++L  R+    
Sbjct: 353  PGTLANVLVTEVTPLGIAGKIMGLLDVTADTVHSNAVGVEDMSKKFKIGSKLKARITYAL 412

Query: 423  ----KSKRITVT---H--KKTLVKSKL---AILSSYAEATD--------RLITHGWITKI 462
                +S ++ V+   H    T   +KL   A     A+A +        +++    +T++
Sbjct: 413  PQVDESTKVGVSLLDHVLALTPAPTKLPGNATFKLKAQAKEIEQALPLSKILDEAKVTRV 472

Query: 463  -EKHGCFV-------RFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIP 511
              + G F+       R    +  FA  S+L    +D     S  Y  G V K R++S  P
Sbjct: 473  LSQQGVFLAVSRKEGRGERTITAFAHISQLSDQHIDTLSSTSGSYKPGTVHKARVLSYNP 532

Query: 512  ASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAVVVYVIAK--GYSKGT 564
                  +S    ++    +  +DL K+G  V G VD  +    + V  ++ K      G 
Sbjct: 533  IDDIYRVSLKQSVLDQAFLRLEDL-KVGQTVKGSVDKLIYGSKSGVTGILVKLSDNVNGL 591

Query: 565  IPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLI-NSAQQLPSDA 622
            +P  HL+D        +S  + G E   ++L +  E   + L+ K SL+ + +  L  D 
Sbjct: 592  VPEMHLSD--TQLRFPESKFRAGSEVKARVLSVHPEERQIRLTLKKSLLEDDSTSLWKDY 649

Query: 623  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
              + P     G +  + + G  ++F G +  + P ++  +      S+ Y +GQ+V   I
Sbjct: 650  HDLEPGMTSRGTIIALHDNGAVIQFYGAVRAWLPVAEMSESWIESPSEFYRLGQTVNVRI 709

Query: 683  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 742
            + V+ E  R    +K +C    D  F QE     ++I        +G EL          
Sbjct: 710  VSVSPEAER----MKVTCKDGGD--FTQEQSDAWDRI--------HGGEL---------- 745

Query: 743  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 802
             +   V E     +++  +     +G     +L      S +  Q+A+  +   E+L +L
Sbjct: 746  -VSACVTEKTADSILLDLD-----HGLKGIIRLGHLVDNSEAKAQSAMKRIRVGEKLKNL 799

Query: 803  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 862
                + +D                K+E S+ + +    + + +  K   L+ S  +    
Sbjct: 800  ----LVLD----------------KQERSRTVVLSNKPSMVKDAAKPGKLIKSFSDARPG 839

Query: 863  IGYASVSDYNTQKFPQKQFLNGQ-SVIATVMALPSSS----------------------T 899
            I +       TQ     +F NG   +I   + LP  S                      T
Sbjct: 840  IKFHGFVRNITQDSVYAEFPNGVVGLITKSLLLPEMSNQPSFGLRRDQTLTVWVTDVDLT 899

Query: 900  AGRLLLLLK---AISETETSSSKRAKKK-------------SSYDVGSLVQAEITEIKPL 943
              R LL ++     ++TETS ++ A +              + + +G++V+A I  +K  
Sbjct: 900  RQRFLLTMREPGQSAQTETSENRNATESDVKNAVDPAISSMADFALGTVVKARIASVKAT 959

Query: 944  ELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQ--TVTARIIAKSNKPDMK-- 997
            ++ ++      GR+ ++EV D   ++        N K+ Q  T+  +I+   +    +  
Sbjct: 960  QINVRLADNVQGRVDVSEVFDSWDDITNKAAPLQNDKLKQNDTIDVKILGIHDARSHRFL 1019

Query: 998  -------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1050
                   K  ++ELS KPS +     G + L     V  G     +V    +      +S
Sbjct: 1020 PISHRGGKVPVFELSAKPSRV---RGGDESLLAMDSVKQGASYLAFVNNHSDNCVWANLS 1076

Query: 1051 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
             +++ ++ ++D + +  +LQ  + RF +G A+   V S++     L L  +   + ++ K
Sbjct: 1077 PNVRGRVSLMDLSDDVGQLQNVENRFRVGCALQVKVKSVDTTSNKLDLTAK---ENLTRK 1133

Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
             + +           G +V  R++KI     G+ V I   +   V   EL     SD   
Sbjct: 1134 ELSL-----------GMVVPARVTKISEH--GITVMIADDIVCHVPLVEL-----SDDYD 1175

Query: 1171 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1230
              + GQ      + + + V+  V+ +S   +  F   +SLR S           LS+ + 
Sbjct: 1176 QTNPGQ------HRKNEVVRVCVVGLSLPDKRVF---VSLRPS---------KVLSSSLP 1217

Query: 1231 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1290
                H+ +   L P  IV+G+VK V  KG F+ L  ++DA V +S+LSD +V+     + 
Sbjct: 1218 VKDAHITEASQLKPGAIVRGFVKRVAEKGIFVSLGSRVDALVHISDLSDQFVKDWPSIYE 1277

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            + +LV GRV++V+  S +V+++LK S      Q  +  + +L  G  V G++++VE +G 
Sbjct: 1278 VNQLVQGRVVTVDAASGQVQLSLKRSHVDNDYQPPMT-IHDLKQGMTVTGKVRKVEDFGA 1336

Query: 1351 FITIENTN--LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1408
            F+ I+NT   L GLCH SE++   ++++   Y +G+ VK K+L VD + R+ISLG+K+SY
Sbjct: 1337 FVDIDNTQPRLSGLCHRSEVAAKRIEDVRKHYSSGDVVKAKVLSVDPDSRKISLGLKASY 1396

Query: 1409 FKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESR 1468
            F N+A+     SE+ES +  E+V   +   + E S         ++E G  + L++++  
Sbjct: 1397 FSNEAE----ISEDESGDESEDVDMEDGVEVEEES---------DAEGGVEVDLSELQEA 1443

Query: 1469 ASVPP-----LEVNLDDEQPDMDNGISQ---NQGHTDEAK-TIDEKNNRHAKKKEKEERE 1519
             S        +EV+ D E   +  G+       G  D  + T  +++       +K +R+
Sbjct: 1444 DSDADEAADAMEVDADIEST-VKGGLKTAGFQWGEPDVGRDTAADESEPETTSTKKRKRK 1502

Query: 1520 QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1579
             EI+      L+K  PR+  +FER + S PN+S +WI+YMAF L +++V+KAR IAERAL
Sbjct: 1503 PEIKEDRTGDLDKFGPRSDSDFERHLLSQPNNSGLWIQYMAFQLELSEVQKARDIAERAL 1562

Query: 1580 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1639
            +TI+IRE  EK++IWVA+ N+E EYG+  +E V  VF+RA +  DP ++H  L  +Y   
Sbjct: 1563 RTIHIRETEEKMHIWVAWLNMEIEYGD--DERVEDVFKRACEVQDPLEMHERLANIYISA 1620

Query: 1640 EQNKLADELLYKMI--KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHI 1695
             +   AD +  K++  K F+ S  VW      L+      +  +A+  RAL S+   ++ 
Sbjct: 1621 GRLDQADAVFEKIVANKNFRASPDVWYNYATFLMNNLGAADRARALQSRALKSISPKENR 1680

Query: 1696 KFISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753
            K +++ A LEF  +NG A+RGRS+FE ILS+ P  +  W  ++D E     +D  R L+E
Sbjct: 1681 KLVAKFAALEFHSENGTAERGRSVFEAILSDSPHWSSGWDQWVDLERSREAIDKTRALYE 1740

Query: 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            R     +  ++ KF+FKK+LEYE+  G+E+ +E VK  A EYV    A
Sbjct: 1741 RISQQKMKKRRAKFVFKKWLEYEEKEGKEKDVERVKALASEYVRKLAA 1788



 Score =  163 bits (412), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 180/735 (24%), Positives = 321/735 (43%), Gaps = 90/735 (12%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE----ANEDNL-------LPTIF 53
           G +  + ++D+ + LP  + G A+   ++ P +++++E    A E++        L  +F
Sbjct: 144 GRITAITDRDIALALPNNMTGYAKIT-SISPKVNSKLEQIMLAEEEDAEEHGDVDLKELF 202

Query: 54  HVGQLVSCIVLQL---DDDKKEIGK------RKIWLSLRLSLLYKGLSLETVQEGMVLTA 104
           H+GQ +   V       ++ K+ GK      + I LS+  +     LS ++V     + A
Sbjct: 203 HIGQWLRAAVTATATEPEEGKDKGKGQSKPKKHIELSIEPAATNGRLSADSVVTHSTIQA 262

Query: 105 YVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRT----R 157
            V+S+EDHG ++  GL     TGF+ +  L     +   K G ++  +V   D+     R
Sbjct: 263 SVRSVEDHGLVMDVGLIEEHATGFIAKKALGAAWELSKAKEGQVMLCLV--TDKVGGDGR 320

Query: 158 KVVYLSSDPDTVSKC-----VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
           KV+ LS D + ++       V  D    ++D  +PG + +  V  +   G+    +    
Sbjct: 321 KVLKLSPDFNKLNGSQSNAPVVSD--APTVDAFLPGTLANVLVTEVTPLGIAGKIMGLLD 378

Query: 213 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT---SRAVGLTLNPYLLHNRAPPS 269
            T D  H  N     +    +    K+ ARI +  P    S  VG++L  ++L     P+
Sbjct: 379 VTADTVH-SNAVGVEDMSKKFKIGSKLKARITYALPQVDESTKVGVSLLDHVLALTPAPT 437

Query: 270 HVK-------------------VGDIYDQSKVVRVDRGLGLLLDIPSTP----VSTPAYV 306
            +                    +  I D++KV RV    G+ L +         +  A+ 
Sbjct: 438 KLPGNATFKLKAQAKEIEQALPLSKILDEAKVTRVLSQQGVFLAVSRKEGRGERTITAFA 497

Query: 307 TISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 363
            IS ++++ +  L      YK G+  + R+L +  ++ +    LK S  +       D+K
Sbjct: 498 HISQLSDQHIDTLSSTSGSYKPGTVHKARVLSYNPIDDIYRVSLKQSVLDQAFLRLEDLK 557

Query: 364 PGMVVKGKVIAV------DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
            G  VKG V  +         G +V+    V  L P  H+S+ ++  P  KF+ G+E+  
Sbjct: 558 VGQTVKGSVDKLIYGSKSGVTGILVKLSDNVNGLVPEMHLSDTQLRFPESKFRAGSEVKA 617

Query: 418 RVLGV--KSKRITVTHKKTLVKS-KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
           RVL V  + ++I +T KK+L++    ++   Y +    + + G I  +  +G  ++FY  
Sbjct: 618 RVLSVHPEERQIRLTLKKSLLEDDSTSLWKDYHDLEPGMTSRGTIIALHDNGAVIQFYGA 677

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---- 530
           V+ + P +E+       PS  Y +GQ V  RI+S  P + R+ ++         E     
Sbjct: 678 VRAWLPVAEMSESWIESPSEFYRLGQTVNVRIVSVSPEAERMKVTCKDGGDFTQEQSDAW 737

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE--HATVMKSVIKPGY 588
           D +  G LVS  V   T +++++  +  G  KG I   HL D+ E    + MK  I+ G 
Sbjct: 738 DRIHGGELVSACVTEKTADSILLD-LDHGL-KGIIRLGHLVDNSEAKAQSAMKR-IRVGE 794

Query: 589 EFDQLLVLDNE--SSNLLLSAKYSLINSAQ---QLPSDASHIHPNSVVHGYVCNIIETGC 643
           +   LLVLD +  S  ++LS K S++  A    +L    S   P    HG+V NI +   
Sbjct: 795 KLKNLLVLDKQERSRTVVLSNKPSMVKDAAKPGKLIKSFSDARPGIKFHGFVRNITQDSV 854

Query: 644 FVRFLGRLTGFAPRS 658
           +  F   + G   +S
Sbjct: 855 YAEFPNGVVGLITKS 869



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 122/301 (40%), Gaps = 34/301 (11%)

Query: 55   VGQL--------VSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 106
            VGQL        V C  LQ+     +    K+ L+ + +L  K LSL     GMV+ A V
Sbjct: 1092 VGQLQNVENRFRVGC-ALQVKVKSVDTTSNKLDLTAKENLTRKELSL-----GMVVPARV 1145

Query: 107  KSIEDHG--------YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRK 158
              I +HG         + H  L   +    + N  ++   +V     ++  V  +    K
Sbjct: 1146 TKISEHGITVMIADDIVCHVPLVELSDDYDQTNPGQHRKNEV-----VRVCVVGLSLPDK 1200

Query: 159  VVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
             V++S  P  V  S    KD        L PG +V   V+ + E G+ +S  +     V 
Sbjct: 1201 RVFVSLRPSKVLSSSLPVKDAHITEASQLKPGAIVRGFVKRVAEKGIFVSLGSRVDALVH 1260

Query: 217  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDI 276
            I  L + F   +W + Y  ++ V  R++ VD  S  V L+L    + N   P  + + D+
Sbjct: 1261 ISDLSDQF-VKDWPSIYEVNQLVQGRVVTVDAASGQVQLSLKRSHVDNDYQPP-MTIHDL 1318

Query: 277  YDQSKV---VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 333
                 V   VR     G  +DI +T          S+VA + +  + K Y  G  V+ ++
Sbjct: 1319 KQGMTVTGKVRKVEDFGAFVDIDNTQPRLSGLCHRSEVAAKRIEDVRKHYSSGDVVKAKV 1378

Query: 334  L 334
            L
Sbjct: 1379 L 1379



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 141/328 (42%), Gaps = 39/328 (11%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKPGL 144
            L++++V++G    A+V +  D+    +   P+  G +   +L+++ G         + G 
Sbjct: 1048 LAMDSVKQGASYLAFVNNHSDNCVWANLS-PNVRGRVSLMDLSDDVGQLQNVENRFRVGC 1106

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
             LQ  V+S+D T   + L     T  + +T+  K +S+     GM+V  RV  I E+G+ 
Sbjct: 1107 ALQVKVKSVDTTSNKLDL-----TAKENLTR--KELSL-----GMVVPARVTKISEHGIT 1154

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK---VNARILFVDPTSRAVGLTLNPYL 261
            +         V +  L + +  TN      QH+K   V   ++ +    + V ++L P  
Sbjct: 1155 VMIADDIVCHVPLVELSDDYDQTN----PGQHRKNEVVRVCVVGLSLPDKRVFVSLRPSK 1210

Query: 262  LHNRAPP---SHVKVGDIYDQSKVVR--VDRGL--GLLLDIPSTPVSTPAYVTISDVAEE 314
            + + + P   +H+          +VR  V R    G+ + + S      A V ISD++++
Sbjct: 1211 VLSSSLPVKDAHITEASQLKPGAIVRGFVKRVAEKGIFVSLGS---RVDALVHISDLSDQ 1267

Query: 315  EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV---FTHSDVKPGMVVKGK 371
             V+     Y+    V+ R++      G     LK S  +       T  D+K GM V GK
Sbjct: 1268 FVKDWPSIYEVNQLVQGRVVTVDAASGQVQLSLKRSHVDNDYQPPMTIHDLKQGMTVTGK 1327

Query: 372  VIAVDSFGAIVQFPGGVKALCPLPHMSE 399
            V  V+ FGA V        L  L H SE
Sbjct: 1328 VRKVEDFGAFVDIDNTQPRLSGLCHRSE 1355



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 9/181 (4%)

Query: 360  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
            S +KPG +V+G V  V   G  V     V AL  +  +S+  +      ++V   +  RV
Sbjct: 1227 SQLKPGAIVRGFVKRVAEKGIFVSLGSRVDALVHISDLSDQFVKDWPSIYEVNQLVQGRV 1286

Query: 420  LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--- 474
            + V   S ++ ++ K++ V +      +  +    +   G + K+E  G FV   N    
Sbjct: 1287 VTVDAASGQVQLSLKRSHVDNDYQPPMTIHDLKQGMTVTGKVRKVEDFGAFVDIDNTQPR 1346

Query: 475  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL----SFMMKPTRVSED 530
            + G   RSE+      +    Y  G VVK +++S  P SR+I+L    S+      +SED
Sbjct: 1347 LSGLCHRSEVAAKRIEDVRKHYSSGDVVKAKVLSVDPDSRKISLGLKASYFSNEAEISED 1406

Query: 531  D 531
            +
Sbjct: 1407 E 1407


>gi|334314101|ref|XP_001378624.2| PREDICTED: protein RRP5 homolog [Monodelphis domestica]
          Length = 1796

 Score =  360 bits (923), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 313/1074 (29%), Positives = 509/1074 (47%), Gaps = 102/1074 (9%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLP--TIF 53
            M+L G V EVN  +LVI LP  L G  +A    DA    L+ +++  E  ++L P   +F
Sbjct: 84   MRLLGCVKEVNNLELVISLPNDLWGYVQATNICDAYTKKLNEQVDREEPLEDLAPLSKLF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C V  L    K+   + I LSL    +   LS   ++ GM+LT  V S+EDHG
Sbjct: 144  QPGMLVRCAVSSLKSTSKK--NKSIKLSLNPKDVNGVLSPAALKPGMLLTGTVDSVEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP     E     N G  ++ G  L  ++  +      V LS+    
Sbjct: 202  YLVDIGVGGTKAFLPWQKEQEYVKQKNKGTKLQVGQYLNCLIEEVKGNGGSVRLSTIQSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  ++D L+PG++V  +VQ +   G+ LSFL+ FTG VD  HL      + 
Sbjct: 262  VSAAIATEEQNWTLDNLLPGLVVKAQVQKVTPYGLSLSFLSSFTGLVDFMHLD-----SK 316

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS---HVKVGDIYDQSKVVRV 285
                Y Q + V A IL V P +++V LTL+   L    P +   H  +G + +   V   
Sbjct: 317  KTGHYFQTQMVRACILSVHPRTKSVRLTLHSSFLQAGRPITRLCHHLIGAVLNDVPVQSF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
                G    +    +   AY  I  +++ E     +K+K G+  R R++ F  ++ LA  
Sbjct: 377  YTKAGATFRLKDGSL---AYARIRHLSQTEKSFKPEKFKPGNLHRCRVIDFSPMDDLALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             LK S  E     + D++PG +VKGKV  + S+G IV+    +K L P  H+++ +I  P
Sbjct: 434  SLKTSIIEAPFLRYHDIQPGQIVKGKVFTLRSYGMIVKVTEQIKGLVPTLHLADVQIRNP 493

Query: 406  GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK++V  E+  RVL    ++K++ +T KKTLV+S L  L++Y EA   L THG+I+ I+
Sbjct: 494  QKKYRVQDEVKCRVLMCDPENKKLLMTLKKTLVESSLPALTNYKEAKPDLQTHGFISSIK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--- 520
              GC V+FYN V+G  P+ ELG  P   P  +++VGQVVK  ++ S P   R+ LSF   
Sbjct: 554  DCGCIVKFYNDVRGLVPQRELGAQPISAPEEVFYVGQVVKVTVLKSEPEQERMLLSFRLS 613

Query: 521  ----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 576
                M    +  +  +VK G LV   V   T   + V ++    S   +PT HL+D++ +
Sbjct: 614  NDKEMESTAQSQKKAMVKTGQLVDVKVKKKTEKGLEVSILPDDIS-ALLPTTHLSDNVTN 672

Query: 577  ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGY 634
            + ++   ++ G    ++L L +   +++L  K +LI++ +  Q P   S   P  ++ G+
Sbjct: 673  SQLLCYWLQAGDILHKVLCLSHSDGHIVLCRKPALISAVESGQDPKVFSEFQPGMLLTGF 732

Query: 635  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 694
            V +I   G FV+F   L+G AP+S   D     +S  +  GQ+V + + +V+ E  R+ L
Sbjct: 733  VKSIKAYGIFVQFPSGLSGLAPKSALSDKFVTTISDHFVEGQTVVAKVTNVDEEKQRMLL 792

Query: 695  SLKQSCCSSTDASFMQEHFL---LEE--KIAMLQSSKHN---GSELKWVEGFIIGSVIEG 746
            SL+ S  S  D +      L   LEE   +  L SS+ +    +  +   G ++  V++ 
Sbjct: 793  SLRLSDVSQEDTTASSLTLLSQCLEELQGVRSLMSSRDSVLTQTLAEMTPGLLVDLVVQD 852

Query: 747  KVHESNDFGVVVSFEEHSDVYGFI----THHQLAGATVESGSVIQAAILDVAKAERLVDL 802
                S+D  +V S   +  V G +     +HQ  G  V+ G   +A IL V   +  V +
Sbjct: 853  M---SSDGSLVFS---NGSVPGLVLRASKYHQ-GGKAVDPGQRTKAVILHVDTQKSEVHV 905

Query: 803  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 862
            SL+   +        NR+ ++ K+  E            A++E +++ + + SL E    
Sbjct: 906  SLRQELV--------NRKVKQLKKDTEH----------RAVIEHLEKTFAIASLVETGQL 947

Query: 863  IGYASVSDYN-TQKFPQKQFLNGQSV-----------IATVMALPSSSTAGRLLLLLKAI 910
            I +   S  N T +F  ++   GQ V           I   +A+  SS   R   L    
Sbjct: 948  IAFPVASHLNDTFRFDSEKLQVGQGVSVIIKSTKPCDIGLFLAV-ESSVKKRTPALPSVA 1006

Query: 911  SETETSSS---KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
             E+            +K +  +G +V   +  IK   + +    G  G IH +++ DD S
Sbjct: 1007 PESAGQDPGVVSELLEKPTLPIGEMVTGTVKSIKATHVIVTLENGLTGYIHASQILDDVS 1066

Query: 968  NVVENLFSNFKIGQTVTARIIAKS----------NKPDMKKSFLWELSIKPSML 1011
            +      +  K+G  VTAR+I +           + P   ++ + ELSI+PS L
Sbjct: 1067 HGTHPT-TTLKVGNPVTARVIGQRTWLTHKSLPISHPSSTQT-VSELSIRPSEL 1118



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            +  D+ P  IV+G V  + S G  + ++ ++   V   +L+D  + +P+K++ +   V  
Sbjct: 446  RYHDIQPGQIVKGKVFTLRSYGMIVKVTEQIKGLVPTLHLADVQIRNPQKKYRVQDEVKC 505

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI---GQIKRVESYGLFITI 1354
            RVL  +P +K++ +TLK    +T  +S +  L+N       +   G I  ++  G  +  
Sbjct: 506  RVLMCDPENKKLLMTLK----KTLVESSLPALTNYKEAKPDLQTHGFISSIKDCGCIVKF 561

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             N ++ GL    EL    +   E ++  G+ VKV +LK + E+ R+ L  + S
Sbjct: 562  YN-DVRGLVPQRELGAQPISAPEEVFYVGQVVKVTVLKSEPEQERMLLSFRLS 613



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 110/254 (43%), Gaps = 32/254 (12%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            I  G IV G++  + S   G++V++   + G V    L ++ + +P   Y          
Sbjct: 450  IQPGQIVKGKVFTLRSY--GMIVKVTEQIKGLVPTLHLADVQIRNPQKKY--------RV 499

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
             DE   VKC+VL      +      ++L+ +L              V++    L   ++ 
Sbjct: 500  QDE---VKCRVLMCDPENKKLL---MTLKKTL--------------VESSLPALTNYKEA 539

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
             P++   G++ ++   GC +     +   V    L    + +PE+ F +G++V   VL  
Sbjct: 540  KPDLQTHGFISSIKDCGCIVKFYNDVRGLVPQRELGAQPISAPEEVFYVGQVVKVTVLKS 599

Query: 1303 EPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
            EP  +R+ ++ + S D    S ++    + +  G +V  ++K+    GL ++I   ++  
Sbjct: 600  EPEQERMLLSFRLSNDKEMESTAQSQKKAMVKTGQLVDVKVKKKTEKGLEVSILPDDISA 659

Query: 1362 LCHVSELSEDHVDN 1375
            L   + LS D+V N
Sbjct: 660  LLPTTHLS-DNVTN 672



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 146/693 (21%), Positives = 267/693 (38%), Gaps = 101/693 (14%)

Query: 741  GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV-------IQAAILDV 793
            G +++GKV     +G++V   E   + G +    LA   + +          ++  +L  
Sbjct: 453  GQIVKGKVFTLRSYGMIVKVTEQ--IKGLVPTLHLADVQIRNPQKKYRVQDEVKCRVLMC 510

Query: 794  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLV 853
                + + ++LK   ++    A +N         +EA  DL  H  +++I    K+   +
Sbjct: 511  DPENKKLLMTLKKTLVESSLPALTNY--------KEAKPDLQTHGFISSI----KDCGCI 558

Query: 854  LSLPEYNHSIGYASVSDYNTQKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 911
            +    YN   G     +   Q    P++ F  GQ V  TV  L S     R+LL  +  +
Sbjct: 559  VKF--YNDVRGLVPQRELGAQPISAPEEVFYVGQVVKVTV--LKSEPEQERMLLSFRLSN 614

Query: 912  ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGI---GFHGRIHITEVNDDKSN 968
            + E  S+ +++KK+    G LV  ++   K  E  L+  I        +  T ++D+ +N
Sbjct: 615  DKEMESTAQSQKKAMVKTGQLVDVKVK--KKTEKGLEVSILPDDISALLPTTHLSDNVTN 672

Query: 969  VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDV 1027
                L   +     +  +++  S+           L  KP++++  E G    +F E   
Sbjct: 673  --SQLLCYWLQAGDILHKVLCLSHSDGH-----IVLCRKPALISAVESGQDPKVFSE--F 723

Query: 1028 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1087
              G  +TG+V  +      +     L        SA     +      F  G+ V   V 
Sbjct: 724  QPGMLLTGFVKSIKAYGIFVQFPSGLSG--LAPKSALSDKFVTTISDHFVEGQTVVAKVT 781

Query: 1088 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1147
            ++++EK+ + L LR   D   + T   S   +   + E   V   +S   S +   + ++
Sbjct: 782  NVDEEKQRMLLSLR-LSDVSQEDTTASSLTLLSQCLEELQGVRSLMSSRDSVLTQTLAEM 840

Query: 1148 GPHLY-----------GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
             P L            G + F+      +    S Y +G        D GQ  K  +L +
Sbjct: 841  TPGLLVDLVVQDMSSDGSLVFSNGSVPGLVLRASKYHQGG----KAVDPGQRTKAVILHV 896

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
              T +   HV  SLR  L    +     L  D +    H   IE L     +   V+   
Sbjct: 897  D-TQKSEVHV--SLRQEL---VNRKVKQLKKDTE----HRAVIEHLEKTFAIASLVE--- 943

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA-----------GRVLSVEPL 1305
                    + +L A  + S+L+D +    EK   +G+ V+           G  L+VE  
Sbjct: 944  --------TGQLIAFPVASHLNDTFRFDSEK-LQVGQGVSVIIKSTKPCDIGLFLAVESS 994

Query: 1306 SKRVEVTLKTSDSRTASQ-----SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
             K+    L +    +A Q     SE+     L +G++V G +K +++  + +T+EN  L 
Sbjct: 995  VKKRTPALPSVAPESAGQDPGVVSELLEKPTLPIGEMVTGTVKSIKATHVIVTLEN-GLT 1053

Query: 1361 GLCHVSELSED--HVDNIETIYRAGEKVKVKIL 1391
            G  H S++ +D  H  +  T  + G  V  +++
Sbjct: 1054 GYIHASQILDDVSHGTHPTTTLKVGNPVTARVI 1086



 Score = 48.1 bits (113), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 1285 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1344
            PEK F  G L   RV+   P+     ++LKTS      ++      ++  G IV G++  
Sbjct: 408  PEK-FKPGNLHRCRVIDFSPMDDLALLSLKTS----IIEAPFLRYHDIQPGQIVKGKVFT 462

Query: 1345 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404
            + SYG+ + +    + GL     L++  + N +  YR  ++VK ++L  D E +++ + +
Sbjct: 463  LRSYGMIVKV-TEQIKGLVPTLHLADVQIRNPQKKYRVQDEVKCRVLMCDPENKKLLMTL 521

Query: 1405 KSSYFKNDADNLQMSSEEESD 1425
            K +  ++    L    E + D
Sbjct: 522  KKTLVESSLPALTNYKEAKPD 542


>gi|148710080|gb|EDL42026.1| programmed cell death protein 11 [Mus musculus]
          Length = 1643

 Score =  357 bits (916), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 366/1355 (27%), Positives = 599/1355 (44%), Gaps = 201/1355 (14%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 84   MRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLLRLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  LD    E GK+ + LS+    + K LS + ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FL      E     N G   K G  L  VV  +     VV LS +   
Sbjct: 202  YLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSLSVEHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+       
Sbjct: 262  VSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE-----PK 316

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
                Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D   V   
Sbjct: 317  KMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  ++ LA  
Sbjct: 377  FKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++  +  P
Sbjct: 434  SLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNP 493

Query: 406  GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+  G E+  RVL    ++K++ +T KKTLV SKL++++ Y  A   L THG I +++
Sbjct: 494  EKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVIIRVK 553

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
             +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ LSF + 
Sbjct: 554  DYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLL 613

Query: 524  PTRVSEDD----------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                 +D            V++G LV   V   T   + V ++    +   +PT HL+DH
Sbjct: 614  SDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPTPHLSDH 672

Query: 574  LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 633
                                      ++N  L   +       Q P   S I P  ++ G
Sbjct: 673  --------------------------AANGPLLHHWLQTVEGGQDPKSLSEIQPGMLLIG 706

Query: 634  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            +V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V+    R+ 
Sbjct: 707  FVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRML 766

Query: 694  LSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVIEGKVH 749
            LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G V++  VH
Sbjct: 767  LSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMVLDAVVH 826

Query: 750  ES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF 808
            E   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V +SL    
Sbjct: 827  EVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEVHVSLHQDL 886

Query: 809  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV 868
            ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  H + ++ +
Sbjct: 887  VNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETGHLVAFSLI 928

Query: 869  SDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY 927
            S  N T  F  ++   GQ V  T+       TA                           
Sbjct: 929  SHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTAD-------------------------- 962

Query: 928  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
                                    GF G IH + + DD   V  +  +  K G+ VTAR+
Sbjct: 963  ------------------------GFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 997

Query: 988  IA----KSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSI-----GQRV 1033
            I     K+ K  P     F   + ELS++PS L  S        E     I     GQ V
Sbjct: 998  IGGRDVKTYKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1057

Query: 1034 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1091
            T +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   V+  + 
Sbjct: 1058 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1117

Query: 1092 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1150
             +  L L ++ P++                  + EG++  GR+ K++    GL V     
Sbjct: 1118 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1158

Query: 1151 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1210
              G+V    L +         Y E    PL  +   + V+C +L  +  V     + LSL
Sbjct: 1159 KIGKVSMFHLSD--------SYSEA---PLEDFCPQKIVRCYILSTAHRV-----LALSL 1202

Query: 1211 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1270
            RSS     + N       ++ P   +  IED+    +++GYVK V      I L   +  
Sbjct: 1203 RSSRTNRETKNR------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLG 1254

Query: 1271 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
                S++S+     PEKE   G L  G++++ + L
Sbjct: 1255 LAKYSHVSECV--PPEKELYNGCLPEGKLVTAKEL 1287



 Score =  276 bits (706), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 135/280 (48%), Positives = 194/280 (69%), Gaps = 3/280 (1%)

Query: 1520 QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1579
            +E   +E+    +  P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL
Sbjct: 1359 EESSDSEDEQPHQAKPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERAL 1418

Query: 1580 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1639
            +TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++
Sbjct: 1419 KTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKS 1476

Query: 1640 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFI 1698
            E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +H+  I
Sbjct: 1477 EKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVI 1536

Query: 1699 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1758
             + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I L
Sbjct: 1537 VKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHL 1596

Query: 1759 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            SL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1597 SLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1636



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
             +   T+  S I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 523  KT-LVTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 581  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611



 Score = 44.3 bits (103), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 90/420 (21%), Positives = 163/420 (38%), Gaps = 77/420 (18%)

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1004
             RLK G+  + R+  + ++D K          FK G T   RII  S   +     L  L
Sbjct: 384  FRLKDGVLAYARV--SHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDE-----LALL 433

Query: 1005 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1064
            S++ S++              D+ IG  V G V  +     L+ +   +K  +  +  A 
Sbjct: 434  SLRKSIIAAP------FLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLA- 486

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
                ++  ++++  G  V   VL  + E K L + L+        KT+  S  ++ T  +
Sbjct: 487  -DIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK--------KTLVTSKLSLIT-CY 536

Query: 1125 EGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF----- 1177
            EG   G +   ++  V   G +V+    + G V   EL    + DP + +  GQ      
Sbjct: 537  EGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAV 596

Query: 1178 -----------------------DP--------LSGYDEGQFVKCKVLEISRTVRGTFHV 1206
                                   DP              GQ V  KVLE ++T      V
Sbjct: 597  LSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKT---GLEV 653

Query: 1207 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE---------DLSPNMIVQGYVKNVTS 1257
             +   ++   + + + SD + +       L+ +E         ++ P M++ G+VK +  
Sbjct: 654  AILPHNTPAFLPTPHLSDHAANGPLLHHWLQTVEGGQDPKSLSEIQPGMLLIGFVKCIKE 713

Query: 1258 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
             G F+     L      + +SD +V +P + F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 714  YGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSD 773


>gi|302424003|ref|XP_003009828.1| rRNA biogenesis protein RRP5 [Verticillium albo-atrum VaMs.102]
 gi|261361662|gb|EEY24090.1| rRNA biogenesis protein RRP5 [Verticillium albo-atrum VaMs.102]
          Length = 1789

 Score =  355 bits (912), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 334/1272 (26%), Positives = 597/1272 (46%), Gaps = 179/1272 (14%)

Query: 603  LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 662
            + L+ K +L+NS   +      +       G + +I   G  + F   + G+ P S+  +
Sbjct: 611  MRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSE 670

Query: 663  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 722
                D  + + VGQ V  +IL+V+ E  ++ +S K               F L+++ A+ 
Sbjct: 671  AFIQDPKEHFKVGQVVNVHILEVDPENQKLLVSCKDPSA-----------FGLDKQAAL- 718

Query: 723  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 782
                         +   +GS++ GKV + +D  V V  +  S++   +   QL   T +S
Sbjct: 719  -------------KALSVGSIVSGKVIQKSDDDVHVELD-GSNLKAILPLGQL---TDKS 761

Query: 783  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA---QKKKRKREASK------- 832
             +  Q+A+  +   + L DL    + +D+    N  R+A     K    EA K       
Sbjct: 762  ANKSQSALKRIHMGQTLTDL----LVLDK----NERRRAITLSSKPSLVEAGKTDKLIRT 813

Query: 833  --DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQKQFLNGQSV 887
              D  V   V   +  ++   +++        + + +   V D   + F  ++    QS+
Sbjct: 814  YADAKVGAEVPGFISSIRPGAVLVRFGGNLVGVMFKTRLPVEDQEKEGFGLRK---DQSI 870

Query: 888  IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS---------YDV--GSLVQAE 936
               + A+    T    L++    +E  ++  K  K+K S          D+  G +V+A+
Sbjct: 871  TVRIRAIDLERTR---LVVDPLTAELPSNEVKPKKEKESARPQAHGPVQDITFGQIVEAK 927

Query: 937  ITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIAKSNKP 994
            I  I   +L ++      GR+ I+++ D  DK    E   S FK G TV  R I   +  
Sbjct: 928  IVGIHDTQLNVETADKVQGRVDISQIFDSWDKIKDPEEPLSQFKKGDTVRVRAIGLHDSK 987

Query: 995  DMK------KSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1046
            D +      +S+  + E + K S +  +++   L  E  D+ +G     +V         
Sbjct: 988  DHRFLAFSHRSYNSVLEFTAKASDIE-ADVLKPLSLE--DLEVGSTHVAFVNNASRNGLW 1044

Query: 1047 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106
              IS  ++ ++  +D + + S++ +    F IG A+   V++++ ++ +L L  R     
Sbjct: 1045 ANISPVVRGRINAMDVSDDTSKINDVINNFPIGTALKVRVIAVDAKRGVLDLSAR----- 1099

Query: 1107 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1166
             SD +  ++ D+    I    ++ G + K+      ++V++G ++ G VH  ++ +    
Sbjct: 1100 -SDSSAAVTWDS----IKPNQVLAGCVVKV--NERQIMVKLGSNVAGHVHLVDMSD---- 1148

Query: 1167 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226
                  D G  + L  YDEG  ++  V+E+ ++ +    V LS R S       NSS   
Sbjct: 1149 ------DFGDVNTLK-YDEGDAIQVSVVEVDKSNK---RVRLSTRPS----RVLNSSSPI 1194

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
            TD       +  ++ +     V+G+VK+V  KG F++L   + A V +SNLSD +++  +
Sbjct: 1195 TD-----SEITSVKQVVSGSTVRGFVKHVADKGVFVLLGGSVSALVKISNLSDRFLKEWK 1249

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1346
            + F + +LV GRVLSV+  + +VE++LK+S     +   +    ++    IV G+I++VE
Sbjct: 1250 EHFQVDQLVKGRVLSVDEGAGQVELSLKSS-VVDDNYKPLKTYKDIKPNQIVTGKIRKVE 1308

Query: 1347 SYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             +G FI ++ + N+ GLCH SE+++  V++   +Y+AG+ VK K+L +D+ K+RIS G+K
Sbjct: 1309 DFGAFIVVDGSDNVSGLCHRSEMADSPVEDARKLYQAGDVVKAKVLTLDRNKKRISFGLK 1368

Query: 1406 SSYFKNDADNLQMSSEE-----------------------ESDEAIEEVGSYNRSSLLEN 1442
             +YF  D D   M   E                       E   +I+ +G+ N     + 
Sbjct: 1369 PAYFDEDVD---MDEGEGAGLDSDNEDEEDVDSDEGEDLAEGGASIKFMGTDNLEDSDDE 1425

Query: 1443 SSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHT-----D 1497
               A  D D++ EDG                 +V++  EQ  + NG     G        
Sbjct: 1426 QDHADSDSDVD-EDG-----------------DVDMSMEQNGLSNGKYDWDGDAFDDSDK 1467

Query: 1498 EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIK 1557
            E ++   K++   +K+ K+ +  EI+      L+ + P+T  ++ERL+   P+SS +WI 
Sbjct: 1468 ETRSAPAKSSASKQKETKKPKTDEIQVDRTVALDANGPQTASDYERLLLGQPDSSALWIA 1527

Query: 1558 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1617
            YMA  + ++++ KAR IAERA++TINIRE+ EKLN+W+AY NLE  YG   +  V +VFQ
Sbjct: 1528 YMALQMRVSELTKAREIAERAIKTINIREQTEKLNVWIAYLNLEVAYGT--KTTVEEVFQ 1585

Query: 1618 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLK--QQ 1674
            RA QY D +++H  L  +Y ++ ++K ADEL    + KF   +  +W      L     Q
Sbjct: 1586 RACQYNDDQEIHERLATIYIQSGKHKKADELFQATVAKFGSKNPNLWTNYAHFLHATLNQ 1645

Query: 1675 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLW 1732
             +  +A++ RA  +L        +++   LEF+  NG A+RGR+ FE +L+ +PKR DLW
Sbjct: 1646 PDRARALLPRATQALGEQHTAALMAKFGSLEFRSPNGDAERGRTTFETLLATWPKRFDLW 1705

Query: 1733 SIYLDQEIRL--GDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1789
            +  +D E+     D   +R +FER   +  L  ++    FK++ E+E     + + E V 
Sbjct: 1706 NQLVDLEMAAPGADATAVRDVFERGTKVKGLKAQRAMKWFKRWAEWEGKTDPKGK-ERVM 1764

Query: 1790 QKAMEYVESTLA 1801
             KA E+V +  A
Sbjct: 1765 AKAAEWVTAAKA 1776



 Score =  185 bits (469), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 302/1227 (24%), Positives = 516/1227 (42%), Gaps = 156/1227 (12%)

Query: 49   LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
            L ++F VGQ V   VL   + +    K  I LSLR      G+S   V     + A V S
Sbjct: 211  LNSLFEVGQYVRAYVLSTKEGEGSGKKNHIELSLRPEDANSGMSKNDVVANATVMAAVTS 270

Query: 109  IEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 165
            ++DHGY +  G+ +    GFLP+ ++ +E   + ++PG +   +V+S+  + K+  L  D
Sbjct: 271  VQDHGYEMELGVDNKKLKGFLPKKDVGSEVDELRLQPGAVSLCLVKSV--SGKIAQLCLD 328

Query: 166  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 225
             + + K      +  +++   PG +V   V S    G++   L +   T D+ H      
Sbjct: 329  SEKLGKADNIATEATTVNTFQPGTVVDVLVTSTTGRGLLGKILGHLPVTADLIHSGAGPD 388

Query: 226  TTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRA----------PPSHV-K 272
              +    Y    +V AR++   P ++   +G++L P+++  +A          PP +V  
Sbjct: 389  AVDLDAKYKVGSRVKARVICTFPNAKNPKLGISLLPHIIKLQAKKAGKGGQAKPPLNVLP 448

Query: 273  VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCV 329
            +    D+  V +V+  +GL +D+    +S   +V IS V + +V  L +    +KEGS  
Sbjct: 449  IAVRVDKCIVRKVEPEIGLYVDVGVAGLS--GFVHISKVKDGKVEALYESSGPFKEGSVH 506

Query: 330  RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV-----KGKVIAVDSFGAIVQF 384
            R R++G+   +G+     + +  E       DV  G +V     K  V      G +V+ 
Sbjct: 507  RGRVIGYSAFDGMYLMTFEPTIIEQQFIRLEDVPAGEIVSCTIEKVVVGGQGVSGLVVKV 566

Query: 385  PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAI 442
              G+       H ++  +  P KKF+ G  +  RVL V+ ++  + +T KKTLV S   I
Sbjct: 567  AEGITGYVHETHFADVRLQHPEKKFREGMTVKARVLSVRPRKRQMRLTLKKTLVNSDTPI 626

Query: 443  LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
            + S+ E        G I+ I  HG  + FY GV+G+ P S++      +P   + VGQVV
Sbjct: 627  IKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSEAFIQDPKEHFKVGQVV 686

Query: 503  KCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVDVVTPNAVVVYVIA 557
               I+   P ++++ +S    P+    D    L     GS+VSG   V+  +   V+V  
Sbjct: 687  NVHILEVDPENQKLLVS-CKDPSAFGLDKQAALKALSVGSIVSG--KVIQKSDDDVHVEL 743

Query: 558  KGYS-KGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NESSN-LLLSAKYSL 611
             G + K  +P   L D  + A   +S +K    G     LLVLD NE    + LS+K SL
Sbjct: 744  DGSNLKAILPLGQLTD--KSANKSQSALKRIHMGQTLTDLLVLDKNERRRAITLSSKPSL 801

Query: 612  INSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG--FAPRSKAVDGQRAD 667
            + + +  +L    +     + V G++ +I      VRF G L G  F  R    D ++  
Sbjct: 802  VEAGKTDKLIRTYADAKVGAEVPGFISSIRPGAVLVRFGGNLVGVMFKTRLPVEDQEKEG 861

Query: 668  LSKTYYVGQSVRSNILDVNSETGRITL--------------------SLKQSCCSSTDAS 707
                    QS+   I  ++ E  R+ +                    +  Q+     D +
Sbjct: 862  FG--LRKDQSITVRIRAIDLERTRLVVDPLTAELPSNEVKPKKEKESARPQAHGPVQDIT 919

Query: 708  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 767
            F Q   ++E KI  +  ++ N      VE       ++G+V  S  F    S+++  D  
Sbjct: 920  FGQ---IVEAKIVGIHDTQLN------VE---TADKVQGRVDISQIFD---SWDKIKDPE 964

Query: 768  GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRK 827
              ++  +  G TV     ++A  L  +K  R +  S         R  NS  +   K   
Sbjct: 965  EPLSQFK-KGDTVR----VRAIGLHDSKDHRFLAFS--------HRSYNSVLEFTAKASD 1011

Query: 828  REAS-------KDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQ- 878
             EA        +DL V  T  A V     N L  ++ P     I    VSD +T K    
Sbjct: 1012 IEADVLKPLSLEDLEVGSTHVAFVNNASRNGLWANISPVVRGRINAMDVSD-DTSKINDV 1070

Query: 879  -KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 937
               F  G ++   V+A+     A R +L L A S++  + +  + K +    G +V+   
Sbjct: 1071 INNFPIGTALKVRVIAV----DAKRGVLDLSARSDSSAAVTWDSIKPNQVLAGCVVK--- 1123

Query: 938  TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPD 995
              +   ++ +K G    G +H+ +++DD  +V  N    +  G  +   ++   KSNK  
Sbjct: 1124 --VNERQIMVKLGSNVAGHVHLVDMSDDFGDV--NTL-KYDEGDAIQVSVVEVDKSNK-- 1176

Query: 996  MKKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHL 1053
                    LS +PS +  + S I    +     V  G  V G+V  V ++   + +   +
Sbjct: 1177 -----RVRLSTRPSRVLNSSSPITDSEITSVKQVVSGSTVRGFVKHVADKGVFVLLGGSV 1231

Query: 1054 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1113
             A + I  S      L+E++  F + + V G VLS+++    + L L+          VD
Sbjct: 1232 SALVKI--SNLSDRFLKEWKEHFQVDQLVKGRVLSVDEGAGQVELSLK-------SSVVD 1282

Query: 1114 ISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1171
             +   ++T+  I    IV G+I K+      +VV    ++ G  H +E+ +  V      
Sbjct: 1283 DNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGSDNVSGLCHRSEMADSPVE----- 1337

Query: 1172 YDEGQFDPLSGYDEGQFVKCKVLEISR 1198
                  D    Y  G  VK KVL + R
Sbjct: 1338 ------DARKLYQAGDVVKAKVLTLDR 1358


>gi|402086176|gb|EJT81074.1| hypothetical protein GGTG_01061 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1795

 Score =  354 bits (908), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 387/1453 (26%), Positives = 672/1453 (46%), Gaps = 154/1453 (10%)

Query: 410  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCF 468
            K+G  L+  V G+K K + V  K+      L IL S +     ++    + K+E   G F
Sbjct: 423  KLGISLLPHVTGLKPKLVAVQGKED--AHPLTILPSSS-----MVEECVVRKVEPGIGLF 475

Query: 469  VRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SF 520
            V     GV GF   S +    +D   E S  Y  G   + R++  S++     ++L  S 
Sbjct: 476  VDVGVEGVPGFVHISRVKDGKVDALYESSGPYKTGSTHRSRVIGYSALDGVFLVSLEKSV 535

Query: 521  MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLE 575
            + +P    ED  V +G +V+  ++  VV  + V  ++  +A+G + G +P  HLAD  L+
Sbjct: 536  LERPYLRIED--VPVGDVVTVTIEKLVVKEDGVSGLIVRLAEGIT-GFVPEMHLADVRLQ 592

Query: 576  HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 634
            H    +   K G +   ++L  D+    L L+ K +L+NS  +       +       G 
Sbjct: 593  HP---EKKFKEGLKVKARVLSADSAKHQLRLTLKKTLLNSETKPIKAFDEVSVGQQFPGT 649

Query: 635  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 694
            +  I+  G FV+F G L GF P S+  +    D ++ + VGQ V  ++++V+    R+ +
Sbjct: 650  IVKIMPIGAFVQFYGALRGFMPISEMSEAYIRDPNEHFRVGQVVNVHVVEVDPAAHRLIV 709

Query: 695  SLKQSCCSSTDASFMQEHFLLEE-KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 753
            S     C    A  M++   L+  K+  L S+K        +   ++GS+++        
Sbjct: 710  S-----CKDPAAFGMEKRLALQALKLGQLVSAKVAQKSEDEISLELVGSLLKA------- 757

Query: 754  FGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA-AILDVAKAERLVDLSLKTVFIDRF 812
               V+     +D     + +Q A   +  G  +    +L+  +  R V LSLK   +   
Sbjct: 758  ---VLRCSHMTDKSA--SKNQSALNKIRVGQTLDGLVVLEKDEDRRAVVLSLKPSLV--- 809

Query: 813  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIG 864
                   +A K  R   A +D  V   V   +  +    + +         LP    + G
Sbjct: 810  -------KASKDGRLLTALQDAKVGSLVQGFIRNITATAVFVQFAGNLTALLPRSLMTAG 862

Query: 865  YASVSDYNTQKFPQKQFLNGQSVIAT--VMALPSSSTAGRLLLLLKAISETETSSSKRAK 922
              +   +   +  Q   +   SV     V+A+P +    +      A      +      
Sbjct: 863  MQAQEGFGL-RLSQPILVKVHSVDDKRLVVAMPDAEPPSKTDKPSSASKPIANAIDPTIN 921

Query: 923  KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIG 980
                  VG + +A I+ +K  +L +  G    GR+ ++EV D  D+    ++    F   
Sbjct: 922  STDDITVGKITKARISSVKKTQLNVSLGDNIQGRVDVSEVFDSWDEIEDPKDPLQKFAAN 981

Query: 981  QTVTARIIAKSNKPDMKKSFL----------WELSIKPSMLTVSEIGSKLLFEECDVSIG 1030
            Q +  R+I   +  + +  FL           EL+ KPS L  +  G K L  E D+   
Sbjct: 982  QIIDVRVIGVHDARNYR--FLPFSHRTAHSVLELTAKPSSLRETARGYKPLALE-DIKPD 1038

Query: 1031 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1090
                 +V   D     + +S  ++ ++   + + + S  ++ ++ F +G A+   V+++ 
Sbjct: 1039 SNWLSFVNNNDGNCLWVNLSPAVRGRIRAAEVSDDSSLSKDLRQHFPVGSALRTRVVTVK 1098

Query: 1091 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1150
             E   L L  R  +        ++  D   T +H       R++K+      +++QI   
Sbjct: 1099 SENGHLDLSARSARPNERLTWDELEKD---TVMH------ARVTKVNDR--QVLIQISDS 1147

Query: 1151 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1210
            + G VH  +L +          D  Q +PL  Y +   ++  V+ + R+ +    V LS 
Sbjct: 1148 VSGPVHMVDLSD----------DYDQANPLR-YSKNDIIRVAVVSVDRSNK---KVRLSA 1193

Query: 1211 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1270
            R          S  L++ +    + +  +  +    I++G+VKNV+ KG F+ L   +DA
Sbjct: 1194 R---------ESRVLNSALPVKDREITAVSQIEVGSIIRGFVKNVSDKGLFVTLG-GVDA 1243

Query: 1271 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1330
             V +++LSD Y++  +  F + +LV GRVL+V P + +V+++LK S +       +   +
Sbjct: 1244 FVRIADLSDAYLKEWKDHFQVDQLVKGRVLAVNPATGQVQMSLKAS-AVDEDYKPLPGFA 1302

Query: 1331 NLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1389
            +   G +V G++++V  +G FI ++ + N+ GLCH +E+++  V +   +Y+ G+ VK  
Sbjct: 1303 DFKKGQVVTGKVRKVADFGAFILVDKSANVSGLCHRTEMADKPVKDATRLYKEGDSVKAI 1362

Query: 1390 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1449
            +L VD  KR+I+LG+K SYF++   +  M  +++ +E +    S +  S         +D
Sbjct: 1363 VLGVDAGKRKITLGLKPSYFEDADSDEDMDGDDDDEEDLASDDSGDSGS---------ED 1413

Query: 1450 MDMESED------GGSLVLAQIESRASVPPLEVNLDDEQ-----PDMD-NGISQNQGHTD 1497
             DME  D      GG  V    +            D E      P +D  G   + G  D
Sbjct: 1414 EDMEDADSVVLFTGGEGVSLDEDGSDDEGDDTSMADAEDGDAPLPGLDAGGFDWSGGGLD 1473

Query: 1498 EAKTIDEKNNRHA-KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1556
            EA  ++E ++  A  KK K+ ++ E+       L+   P+   +FERL+   PNSS +WI
Sbjct: 1474 EA--VNEADDSGAVAKKSKKRKKVEVEVDRTGDLDAKGPQAASDFERLLLGQPNSSSLWI 1531

Query: 1557 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1616
             Y+AF + ++++ KAR IAERA+ TIN+REE EKLN+W+AY NLE  YG   +E + +VF
Sbjct: 1532 AYVAFQMQVSELSKAREIAERAINTINVREETEKLNVWIAYLNLEVAYGT--DETLNEVF 1589

Query: 1617 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQ 1673
            +RA QY D ++V+  L  +  ++ +N   DEL   M+KKF   S  VWL     L  L  
Sbjct: 1590 RRACQYNDEQEVYERLTSICIQSGKNDKVDELFQTMVKKFGSKSPDVWLNYAHFLYTLGG 1649

Query: 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDL 1731
              E  +A++ RAL SL    H+   S+ A LEF+   G  +RGR++FEG+L+ YPKR DL
Sbjct: 1650 SAERGRALLPRALKSLDSRAHLTLTSKFAALEFRCAGGEPERGRTVFEGLLATYPKRFDL 1709

Query: 1732 WSIYLDQEIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYV 1788
            W+  LD E    D D  ++R +FER   +  L P++ K  F+++ ++E++ G+ +  E V
Sbjct: 1710 WNQLLDLETSAADKDANVVRDVFERGTKVKGLKPRQAKAWFQRWAKWEEANGDAKSREKV 1769

Query: 1789 KQKAMEYVESTLA 1801
              KA  +  S  A
Sbjct: 1770 TAKAKGWASSAEA 1782



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 289/1248 (23%), Positives = 525/1248 (42%), Gaps = 123/1248 (9%)

Query: 5    GVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDN----------LLPT 51
            G V+++   +L + LP  L G   +   ++ L   L+++   +E+            L  
Sbjct: 155  GQVSKIGPLELELSLPNNLVGHVPITAVSEHLTKKLESDAATSEEEQDDADDGGDSDLTA 214

Query: 52   IFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
            +F VGQ V   V    DD        KR+I LSL   L   GL    + E   +   + S
Sbjct: 215  LFSVGQFVRAYVTSTVDDSGSASAKAKRRIELSLYPELANLGLGESDIVENSTVAGSILS 274

Query: 109  IEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 165
            +EDHGY++  G+      GFLP+  +  N     + PG +   +V     +  V  LS  
Sbjct: 275  VEDHGYVVSLGIQDSQLRGFLPKKEVDSNIPSTRLVPGCVHMFLVSGRRASGTVSRLSLL 334

Query: 166  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 225
               +           +I+  +PG  V   V  +    +    + +   T D+ H      
Sbjct: 335  SSNLGNLKLYPASAKTINTFLPGTAVEVLVSDVSSRSLAGKVIGHLDVTADVIHSGCGPD 394

Query: 226  TTNWKNDYNQHKKVNARILFVDPT--SRAVGLTLNPYLL------------HNRAPPSHV 271
              + +  Y    K+ ARI+   P   S  +G++L P++              +  P + +
Sbjct: 395  GLDLEKTYKVGSKIKARIICTFPAADSPKLGISLLPHVTGLKPKLVAVQGKEDAHPLTIL 454

Query: 272  KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSC 328
                + ++  V +V+ G+GL +D+    V  P +V IS V + +V  L +    YK GS 
Sbjct: 455  PSSSMVEECVVRKVEPGIGLFVDVGVEGV--PGFVHISRVKDGKVDALYESSGPYKTGST 512

Query: 329  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV----KGKVIAVDSF-GAIVQ 383
             R R++G+  L+G+    L+ S  E       DV  G VV    +  V+  D   G IV+
Sbjct: 513  HRSRVIGYSALDGVFLVSLEKSVLERPYLRIEDVPVGDVVTVTIEKLVVKEDGVSGLIVR 572

Query: 384  FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLA 441
               G+    P  H+++  +  P KKFK G ++  RVL   S +  + +T KKTL+ S+  
Sbjct: 573  LAEGITGFVPEMHLADVRLQHPEKKFKEGLKVKARVLSADSAKHQLRLTLKKTLLNSETK 632

Query: 442  ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 501
             + ++ E +      G I KI   G FV+FY  ++GF P SE+      +P+  + VGQV
Sbjct: 633  PIKAFDEVSVGQQFPGTIVKIMPIGAFVQFYGALRGFMPISEMSEAYIRDPNEHFRVGQV 692

Query: 502  VKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIA 557
            V   ++   PA+ R+ +S         E  L    +KLG LVS  V   + + + + ++ 
Sbjct: 693  VNVHVVEVDPAAHRLIVSCKDPAAFGMEKRLALQALKLGQLVSAKVAQKSEDEISLELVG 752

Query: 558  KGYSKGTIPTEHLADHLEHATVMKSV---IKPGYEFDQLLVL--DNESSNLLLSAKYSLI 612
                K  +   H+ D  + A+  +S    I+ G   D L+VL  D +   ++LS K SL+
Sbjct: 753  S-LLKAVLRCSHMTD--KSASKNQSALNKIRVGQTLDGLVVLEKDEDRRAVVLSLKPSLV 809

Query: 613  NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 670
             +++  +L +        S+V G++ NI  T  FV+F G LT   PRS    G +A    
Sbjct: 810  KASKDGRLLTALQDAKVGSLVQGFIRNITATAVFVQFAGNLTALLPRSLMTAGMQAQEGF 869

Query: 671  TYYVGQSVRSNILDVNSETGRITLSL----------KQSCCSSTDASFMQEHFLLEEKIA 720
               + Q +   +  V+ +  R+ +++          K S  S   A+ +       + I 
Sbjct: 870  GLRLSQPILVKVHSVDDK--RLVVAMPDAEPPSKTDKPSSASKPIANAIDPTINSTDDIT 927

Query: 721  MLQSSKHNGSELKWVE-GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 779
            + + +K   S +K  +    +G  I+G+V  S  F      E+  D       +Q     
Sbjct: 928  VGKITKARISSVKKTQLNVSLGDNIQGRVDVSEVFDSWDEIEDPKDPLQKFAANQ----- 982

Query: 780  VESGSVIQAAILDV--AKAERLVDLSLKTVF-IDRFREANSNRQAQKKKRKREASKDLGV 836
                 +I   ++ V  A+  R +  S +T   +       S+ +   +  K  A +D+  
Sbjct: 983  -----IIDVRVIGVHDARNYRFLPFSHRTAHSVLELTAKPSSLRETARGYKPLALEDIKP 1037

Query: 837  HQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNT-QKFPQKQFLNGQSVIATVMAL 894
                 + V     N L ++L P     I  A VSD ++  K  ++ F  G ++   V+ +
Sbjct: 1038 DSNWLSFVNNNDGNCLWVNLSPAVRGRIRAAEVSDDSSLSKDLRQHFPVGSALRTRVVTV 1097

Query: 895  PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGSLVQAEITEIKPLELRLKFGI 951
             S +  G L L         ++ S R  ++ ++D     +++ A +T++   ++ ++   
Sbjct: 1098 KSEN--GHLDL---------SARSARPNERLTWDELEKDTVMHARVTKVNDRQVLIQISD 1146

Query: 952  GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1011
               G +H+ +++DD        +S   I + V    + +SNK          LS + S +
Sbjct: 1147 SVSGPVHMVDLSDDYDQANPLRYSKNDIIR-VAVVSVDRSNKK-------VRLSARESRV 1198

Query: 1012 TVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1069
              S   +  + +     + +G  + G+V  V ++   +T+        F+  +    + L
Sbjct: 1199 LNSALPVKDREITAVSQIEVGSIIRGFVKNVSDKGLFVTLG---GVDAFVRIADLSDAYL 1255

Query: 1070 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGD 1127
            +E++  F + + V G VL++N     +++ L+          VD     +  F    +G 
Sbjct: 1256 KEWKDHFQVDQLVKGRVLAVNPATGQVQMSLKA-------SAVDEDYKPLPGFADFKKGQ 1308

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1175
            +V G++ K+      ++V    ++ G  H TE+ +  V D    Y EG
Sbjct: 1309 VVTGKVRKVADFGAFILVDKSANVSGLCHRTEMADKPVKDATRLYKEG 1356


>gi|380482965|emb|CCF40910.1| rRNA biogenesis protein RRP5, partial [Colletotrichum higginsianum]
          Length = 1210

 Score =  353 bits (907), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 335/1256 (26%), Positives = 575/1256 (45%), Gaps = 166/1256 (13%)

Query: 603  LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 662
            L L+ K +L+NS   +  +           G +      G  + F G + GF P S+  +
Sbjct: 43   LRLTLKKTLVNSDAPIVKNYDDAEVGMQTPGTITGFTAAGAQLEFFGDVRGFLPLSQMSE 102

Query: 663  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 722
                D  + + VGQ V  ++LDVN E  R+ +S K               F L+++ A+ 
Sbjct: 103  AYIKDPKEHFRVGQVVSVHVLDVNPEERRMVVSCKDPSA-----------FGLDKQAAL- 150

Query: 723  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 782
                         +   IG ++  KV +  +  V V  EE S +   I    L+    +S
Sbjct: 151  -------------KALKIGDIVSAKVSQKTEDEVFVDLEE-SGLKAIIRTGHLSD---KS 193

Query: 783  GSVIQAA--------------ILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 828
             S  QAA              +LD  +  R V L+ K  F           +A KK    
Sbjct: 194  ASKTQAAWKRINVGNLLSDLVVLDKNERRRAVILTQKPSFA----------EASKKGTLL 243

Query: 829  EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVI 888
             +++D+ V   V A V  +    + +        I   +    + Q+ P       QS+ 
Sbjct: 244  SSAEDVTVGAVVPAYVREIGPFAVYVQFGGSLTGILPKAKLPKDAQEKPAFGMRKHQSI- 302

Query: 889  ATVMALPSSSTAGRLLLLLKAISETETSSSKRA--------KKKSSYDVGSLVQAEITEI 940
              V  + S+    R+++   +  E    + + A        K  +   +G+++ A++  I
Sbjct: 303  -EVKIVSSNPEQNRIIVAPASADEPAPIAPESAVNSVDDSIKTINDIALGTILNAKVMSI 361

Query: 941  KPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARIIAKSNKPDMK- 997
            K  +L +K      GRI +++  D   N+  ++N     K  + +  R I   +  + + 
Sbjct: 362  KNTQLNVKVADNIQGRIDVSQFFDAWENIKNLKNPLQQVKANEIIRVRAIGIHDSKNYRF 421

Query: 998  -------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1050
                      L E + K S +   E+    L     + +G     +V         + +S
Sbjct: 422  LPFSHRSTHSLIEFTAKASDIKAKEVE---LLSYDKIEVGSSHVAFVNNHGKNCLWVNLS 478

Query: 1051 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
              ++ ++ I+D + + S     ++ F +G A+   VLS++ +K  L L  R    G S+ 
Sbjct: 479  PTVRGRISIMDVSDDLSHAGNLEKYFPVGSALKVRVLSVDADKGHLDLSSR-SSTGSSEV 537

Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
            T D    NM         + GR++K+      ++V++   + G VH  +L   C      
Sbjct: 538  TWDSLKKNM--------TLPGRVTKV--NDRSVMVKLSDSVSGPVHLVDL---C-----D 579

Query: 1171 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1230
             YDE        Y +G+ ++  V+E+ ++ +    + LS R S    S++  +D      
Sbjct: 580  NYDEAN---TLKYTKGEIIRVSVVEVDKSNK---RLRLSTRPSRILSSTSPVAD------ 627

Query: 1231 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1290
               + + K+  +S   I++G+VKNVT KG F+ L   + A V + NLSD Y++  +  F 
Sbjct: 628  ---REITKLPQISSGDIIRGFVKNVTDKGVFVQLGGTVSAYVKIGNLSDRYIKDWKGNFQ 684

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            + +LV GRV++V+    +VE++LK S         +    ++  G IV G++++VE +G 
Sbjct: 685  VDQLVKGRVINVDTAINQVELSLKASVVENDYTPPVT-YKDIKEGQIVTGKVRKVEEFGA 743

Query: 1351 FITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
            FI ++N+ N+ GLCH SE++E  V++   +Y  G+ VK KIL VD E++RI+  +K S+F
Sbjct: 744  FIVVDNSHNVSGLCHRSEMAEKPVEDARRLYSEGDVVKAKILSVDDERKRITFSLKPSHF 803

Query: 1410 KNDAD--NLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG-SLVLAQIE 1466
              D+D  +++  +E  SDE                      D D+E  DGG  L ++  +
Sbjct: 804  DEDSDMEDVEGGAELASDE----------------------DSDVEMGDGGVQLTISGTD 841

Query: 1467 S----------RASVPPLEVNLDDEQPDMDNGISQNQGHTD-EAKTIDEKNNRHAKK--- 1512
            +                 + +  + +     G   + G  D      DE +     K   
Sbjct: 842  NFDDSDEDEDDEEEEEEEDDSDVEMEDKAATGKGLSAGKYDWTGDAFDESDGESTSKTKK 901

Query: 1513 ----KEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1568
                ++KE+++  I+      L+   P+T  ++ERL+   P+SS +WI+YMA  + ++++
Sbjct: 902  PTATEKKEKKQSGIQVDRTADLDAHGPQTATDYERLLLGEPDSSQLWIQYMALQMKVSEL 961

Query: 1569 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1628
             KAR IAERA++TINIRE+ EKLN+W+AY NLE  YG   + +  +VF+RA QY D ++V
Sbjct: 962  AKAREIAERAIKTINIREQMEKLNVWIAYLNLEVAYGT--KASTEEVFKRACQYNDEQEV 1019

Query: 1629 HLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRL--LKQQQEGVQAVVQRA 1685
            H  L  +Y ++ + K AD++   ++ KFK  S KVW      L     + +  +A++ RA
Sbjct: 1020 HERLASIYIQSGKLKQADDVFQSLVAKFKSKSPKVWENYAHFLHVTMNEPDRARALLPRA 1079

Query: 1686 LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1743
              +L      + ++    LEFK  NG A+RGR+ FE IL+ +PKR DLW+   D EI   
Sbjct: 1080 TQALEERHTAQLMASFGALEFKSPNGDAERGRTTFETILATWPKRFDLWNQLADLEISAA 1139

Query: 1744 DVD--LIRGLFER-AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            + D   IR +FER A +  L PKK    FK++ E+E+ +  + R + V  KA E+V
Sbjct: 1140 EPDATAIRDVFERGAKAKGLKPKKAMKWFKRWAEWEQKLSPKGR-DKVMAKAQEWV 1194



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 149/321 (46%), Gaps = 14/321 (4%)

Query: 387 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILS 444
           G+       H+++ ++  P KKF+ G  +  RVL V+ ++  + +T KKTLV S   I+ 
Sbjct: 1   GITGYVHESHLADVKLQHPEKKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIVK 60

Query: 445 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 504
           +Y +A   + T G IT     G  + F+  V+GF P S++      +P   + VGQVV  
Sbjct: 61  NYDDAEVGMQTPGTITGFTAAGAQLEFFGDVRGFLPLSQMSEAYIKDPKEHFRVGQVVSV 120

Query: 505 RIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKG 559
            ++   P  RR+ +S    P+    D       +K+G +VS  V   T + V V +   G
Sbjct: 121 HVLDVNPEERRMVVS-CKDPSAFGLDKQAALKALKIGDIVSAKVSQKTEDEVFVDLEESG 179

Query: 560 YSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLINSAQ 616
             K  I T HL+D     T      I  G     L+VLD NE    ++L+ K S   +++
Sbjct: 180 L-KAIIRTGHLSDKSASKTQAAWKRINVGNLLSDLVVLDKNERRRAVILTQKPSFAEASK 238

Query: 617 Q--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 674
           +  L S A  +   +VV  YV  I     +V+F G LTG  P++K     +   +     
Sbjct: 239 KGTLLSSAEDVTVGAVVPAYVREIGPFAVYVQFGGSLTGILPKAKLPKDAQEKPAFGMRK 298

Query: 675 GQSVRSNILDVNSETGRITLS 695
            QS+   I+  N E  RI ++
Sbjct: 299 HQSIEVKIVSSNPEQNRIIVA 319



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +  G +++G V  V   G  VQ  G V A   + ++S+  I      F+V   +  RV+ 
Sbjct: 636 ISSGDIIRGFVKNVTDKGVFVQLGGTVSAYVKIGNLSDRYIKDWKGNFQVDQLVKGRVIN 695

Query: 422 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQG 477
           V +   ++ ++ K ++V++      +Y +  +  I  G + K+E+ G F+   N   V G
Sbjct: 696 VDTAINQVELSLKASVVENDYTPPVTYKDIKEGQIVTGKVRKVEEFGAFIVVDNSHNVSG 755

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
              RSE+   P  +   +Y  G VVK +I+S     +RI  +F +KP+   ED
Sbjct: 756 LCHRSEMAEKPVEDARRLYSEGDVVKAKILSVDDERKRI--TFSLKPSHFDED 806



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 304 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHS 360
            YV  S +A+ +++  EKK++EG  V+ R+L  R  +      LK +       +V  + 
Sbjct: 4   GYVHESHLADVKLQHPEKKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIVKNYD 63

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           D + GM   G +    + GA ++F G V+   PL  MSE  I  P + F+VG  +   VL
Sbjct: 64  DAEVGMQTPGTITGFTAAGAQLEFFGDVRGFLPLSQMSEAYIKDPKEHFRVGQVVSVHVL 123

Query: 421 GV--KSKRITVTHK 432
            V  + +R+ V+ K
Sbjct: 124 DVNPEERRMVVSCK 137



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 20/265 (7%)

Query: 180 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 239
           ++ D L   M +  RV  + +  VM+      +G V +  L + +   N    Y + + +
Sbjct: 537 VTWDSLKKNMTLPGRVTKVNDRSVMVKLSDSVSGPVHLVDLCDNYDEAN-TLKYTKGEII 595

Query: 240 NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLG 290
              ++ VD +++ + L+  P  + +   P           +  GDI         D+G+ 
Sbjct: 596 RVSVVEVDKSNKRLRLSTRPSRILSSTSPVADREITKLPQISSGDIIRGFVKNVTDKGVF 655

Query: 291 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
           + L       +  AYV I ++++  ++  +  ++    V+ R++            LKAS
Sbjct: 656 VQLG-----GTVSAYVKIGNLSDRYIKDWKGNFQVDQLVKGRVINVDTAINQVELSLKAS 710

Query: 351 AFEGLV---FTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKP 405
             E       T+ D+K G +V GKV  V+ FGA  +V     V  LC    M+E  +   
Sbjct: 711 VVENDYTPPVTYKDIKEGQIVTGKVRKVEEFGAFIVVDNSHNVSGLCHRSEMAEKPVEDA 770

Query: 406 GKKFKVGAELVFRVLGVKSKRITVT 430
            + +  G  +  ++L V  +R  +T
Sbjct: 771 RRLYSEGDVVKAKILSVDDERKRIT 795



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 136/330 (41%), Gaps = 38/330 (11%)

Query: 239 VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 298
           V AR+L V P  R + LTL   L+++ AP     +   YD ++V     G          
Sbjct: 29  VKARVLSVRPRKRQLRLTLKKTLVNSDAP-----IVKNYDDAEVGMQTPGTITGFTAAGA 83

Query: 299 PV----STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL---------ATG 345
            +        ++ +S ++E  ++  ++ ++ G  V V +L     E           A G
Sbjct: 84  QLEFFGDVRGFLPLSQMSEAYIKDPKEHFRVGQVVSVHVLDVNPEERRMVVSCKDPSAFG 143

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVK 404
           + K +A + L       K G +V  KV         V     G+KA+    H+S+    K
Sbjct: 144 LDKQAALKAL-------KIGDIVSAKVSQKTEDEVFVDLEESGLKAIIRTGHLSDKSASK 196

Query: 405 ---PGKKFKVG---AELVFRVLGVKSKRITVTHKKTLVKS--KLAILSSYAEATDRLITH 456
                K+  VG   ++LV      + + + +T K +  ++  K  +LSS  + T   +  
Sbjct: 197 TQAAWKRINVGNLLSDLVVLDKNERRRAVILTQKPSFAEASKKGTLLSSAEDVTVGAVVP 256

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
            ++ +I     +V+F   + G  P+++L  D   +P+      Q ++ +I+SS P   RI
Sbjct: 257 AYVREIGPFAVYVQFGGSLTGILPKAKLPKDAQEKPAFGMRKHQSIEVKIVSSNPEQNRI 316

Query: 517 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVV 546
               ++ P    E   +   S V+ V D +
Sbjct: 317 ----IVAPASADEPAPIAPESAVNSVDDSI 342



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 123/555 (22%), Positives = 228/555 (41%), Gaps = 87/555 (15%)

Query: 53  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL---YKGL---SLETVQEGMVLTAYV 106
            +VG L+S +V+ LD +++   +R + L+ + S      KG    S E V  G V+ AYV
Sbjct: 204 INVGNLLSDLVV-LDKNER---RRAVILTQKPSFAEASKKGTLLSSAEDVTVGAVVPAYV 259

Query: 107 KSIEDHGYILHFGLPSFTGFLPRNNLAENS------GIDVKPGLLLQGVVRSIDRTRKVV 160
           + I      + FG  S TG LP+  L +++      G+     + ++ V  + ++ R +V
Sbjct: 260 REIGPFAVYVQFG-GSLTGILPKAKLPKDAQEKPAFGMRKHQSIEVKIVSSNPEQNRIIV 318

Query: 161 YLSSD-------PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 213
             +S        P++    V   +K  +I+ +  G +++ +V SI    + +       G
Sbjct: 319 APASADEPAPIAPESAVNSVDDSIK--TINDIALGTILNAKVMSIKNTQLNVKVADNIQG 376

Query: 214 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL------TLNPY------- 260
            +D+    + +   N KN  N  ++V A  +      RA+G+         P+       
Sbjct: 377 RIDVSQFFDAW--ENIKNLKNPLQQVKANEII---RVRAIGIHDSKNYRFLPFSHRSTHS 431

Query: 261 LLHNRAPPSHVKVGDI----YDQ-----SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 311
           L+   A  S +K  ++    YD+     S V  V+      L +  +P +    ++I DV
Sbjct: 432 LIEFTAKASDIKAKEVELLSYDKIEVGSSHVAFVNNHGKNCLWVNLSP-TVRGRISIMDV 490

Query: 312 AEE--EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 369
           +++      LEK +  GS ++VR+L     +G    +   S+      T   +K  M + 
Sbjct: 491 SDDLSHAGNLEKYFPVGSALKVRVLSVDADKG-HLDLSSRSSTGSSEVTWDSLKKNMTLP 549

Query: 370 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 427
           G+V  V+    +V+    V     L  + +        K+  G  +   V+ V   +KR+
Sbjct: 550 GRVTKVNDRSVMVKLSDSVSGPVHLVDLCDNYDEANTLKYTKGEIIRVSVVEVDKSNKRL 609

Query: 428 TVTHKKTLVKSKLAILSSYAEATDRLIT-----------HGWITKIEKHGCFVRFYNGVQ 476
            ++ + +       ILSS +   DR IT            G++  +   G FV+    V 
Sbjct: 610 RLSTRPS------RILSSTSPVADREITKLPQISSGDIIRGFVKNVTDKGVFVQLGGTVS 663

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---- 532
            +     L      +    + V Q+VK R+++   A  ++ LS       V E+D     
Sbjct: 664 AYVKIGNLSDRYIKDWKGNFQVDQLVKGRVINVDTAINQVELSLK---ASVVENDYTPPV 720

Query: 533 ----VKLGSLVSGVV 543
               +K G +V+G V
Sbjct: 721 TYKDIKEGQIVTGKV 735


>gi|134111727|ref|XP_775399.1| hypothetical protein CNBE1150 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258058|gb|EAL20752.1| hypothetical protein CNBE1150 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1484

 Score =  353 bits (906), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 226/693 (32%), Positives = 378/693 (54%), Gaps = 50/693 (7%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            I  G I+ G + +  S   G +VQ+  +L GRVH  +  +  V     G       PL+ 
Sbjct: 808  IEVGQIITGTVQEQTSQ--GYMVQLPNNLRGRVHPCDSSDYLVLAAGHG-------PLT- 857

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
               G+ VKC VL+++R+ R    ++LS R S + G  +    +++T           ++D
Sbjct: 858  --VGEEVKCYVLDVNRSKRA---IDLSTRLSRVQGKENVVDREINT-----------VDD 901

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L     V+G VKN+   G F+ L R + A++++  L D YV+  +  F I +LV+G++LS
Sbjct: 902  LKEGESVRGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWKSRFEINQLVSGKILS 961

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
            + P S  +E+TL+ + S++A ++ + +LS+   G  V+  +++VE+YG+F+ IE +N+ G
Sbjct: 962  INPGSNSIEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSG 1021

Query: 1362 LCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            LCH SE++++   ++      +R G++VK KI+ +D EK +IS G+K+SYF  + +  + 
Sbjct: 1022 LCHKSEITDNRKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKASYFGEEFEGGEK 1081

Query: 1419 SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNL 1478
            S +E+ +   E    +N       S         E ED  SL +   E  A+    +   
Sbjct: 1082 SEDEDDEADEENDEQFNEGDQEMESDAGESGEGQEHEDEESLEIDGGEEEATSDEEDNAP 1141

Query: 1479 DDEQPDMDNGISQNQGH--TDEAKTIDEKNNRH----------AKKKEKEEREQEIRAAE 1526
             + +P     ++   G   T EA     +++            AK K K +       A 
Sbjct: 1142 QNFKPAPKTALNLGAGFDWTGEAPAAAPESDDESDSDEEAVAPAKAKGKSKAVDLTATAP 1201

Query: 1527 ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1586
                    P +  E+ER + +SPNSSF+WI+YM+F L + ++EKAR I  +AL+ I+ RE
Sbjct: 1202 -----SSRPSSTGEYERALLASPNSSFLWIQYMSFHLQLHEIEKARKIGRQALEKISYRE 1256

Query: 1587 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1646
            E EKLN+W+A  NLE  +G     A  KVF+ A QY D + V++      +   +++  +
Sbjct: 1257 EEEKLNVWMALINLEIAFGTV--SATEKVFEEAAQYNDKRTVYMRYAEALQVAGKDEALE 1314

Query: 1647 ELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1705
            EL  K++KKF    + W R  +  L K   E  +A++ R++ SL + KH++ I + A+LE
Sbjct: 1315 ELFKKIVKKFSAYPESWTRFAEFYLNKGDVEAARALLPRSMKSLDKSKHVETIEKMALLE 1374

Query: 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765
            FK G A+RG+++FEG++  +PKR DLW +Y+DQ  ++GD+  +RGL +RA+   L  KK 
Sbjct: 1375 FKQGDAERGKTLFEGLVDRFPKRLDLWGVYIDQVAKVGDIQGVRGLMDRALEQKLTSKKA 1434

Query: 1766 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            KFLFKK+L  E+ +G+    +  K +A E+VE+
Sbjct: 1435 KFLFKKWLTIEQRIGDAAGQDKAKTRAREWVEA 1467



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 158/651 (24%), Positives = 282/651 (43%), Gaps = 61/651 (9%)

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRNNLAEN-SGIDVKPGLLLQGV 149
           ++ G  L   VKS ED G+I+  GL      S  GF+ ++ +A+      + PG LL   
Sbjct: 247 LETGYFLVGEVKSEEDKGWIVGVGLNTQGGSSVEGFVSKDEVAKFVPAQALIPGQLLPAT 306

Query: 150 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 209
           + SI    +V +LS +   +++    ++   ++  +VPG  V+  + +++ +G+ +    
Sbjct: 307 ISSIAAGGRVAHLSLNQQDITRSQISEVS--TVGSIVPGHSVNALITAVVPSGLNVKVAG 364

Query: 210 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF----VDPTSRAVGLTLNPYLLHNR 265
           +F GT+D+ HL       + +N Y   KK+ AR+++     +P S A  L+  P++L+  
Sbjct: 365 FFDGTIDLAHL--PLGEDDIENKYKIGKKIRARVIYDNLAANPHSFA--LSALPHVLNFT 420

Query: 266 APPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 316
           +P            + +G +Y   KV RV    G+++    T      +V IS +A+E +
Sbjct: 421 SPTQEGDNTPLELAIPIGKVYQSVKVTRVLNDWGVMV---RTQDGLEGFVHISHLADERI 477

Query: 317 RKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
             L     ++K G+  R R++G   ++G+     + S    L     ++K G  +KG + 
Sbjct: 478 PVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLSQLFMQVDELKVGQQLKGTIR 537

Query: 374 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTH 431
            +      V   G V  +    H ++  +  P K+FK    +  RVL ++    R+ +T 
Sbjct: 538 RLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEGSVKARVLYLEPTRNRVVLTL 597

Query: 432 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 491
           KKT ++S LA+   + +     +T G + KI   G  V  + G++ F P SE        
Sbjct: 598 KKTFLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTHIKN 657

Query: 492 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPN 549
            S  +++G+ +  R+++   ++ RI +S              KL  G  VSG V  V   
Sbjct: 658 LSEAFYIGKPLTVRVITVDASASRIVVSAKQAAPTAPATAAEKLEVGEAVSGTVSQVHTE 717

Query: 550 AVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD-NESSNLL-- 604
            VVV +   G +   +   +L++   H  +  ++  +K G + D L+V+  N  S L+  
Sbjct: 718 QVVVKLDGNGLT-ALLSLSNLSNQ-RHTGIEELRRSLKEGEKIDDLVVVSKNPVSGLIIV 775

Query: 605 -----LSAKYSLINSAQQLPSDAS-------HIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
                ++AK        + PS  S        I    ++ G V      G  V+    L 
Sbjct: 776 NIKKTITAKKEKAKKEDKAPSGISAHVKAIDAIEVGQIITGTVQEQTSQGYMVQLPNNLR 835

Query: 653 GFAPRSKAVDGQR----ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G   R    D       A       VG+ V+  +LDVN     I LS + S
Sbjct: 836 G---RVHPCDSSDYLVLAAGHGPLTVGEEVKCYVLDVNRSKRAIDLSTRLS 883



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 125/281 (44%), Gaps = 32/281 (11%)

Query: 92   SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG--- 148
            +++ ++ G ++T  V+     GY++          LP N        D    L+L     
Sbjct: 804  AIDAIEVGQIITGTVQEQTSQGYMVQ---------LPNNLRGRVHPCDSSDYLVLAAGHG 854

Query: 149  ----------VVRSIDRTRKVVYLSSDPDTVS---KCVTKDLKGISIDLLVPGMMVSTRV 195
                       V  ++R+++ + LS+    V      V +++   ++D L  G  V   V
Sbjct: 855  PLTVGEEVKCYVLDVNRSKRAIDLSTRLSRVQGKENVVDREIN--TVDDLKEGESVRGLV 912

Query: 196  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 255
            ++I  +GV +S     T  + I  L + +   +WK+ +  ++ V+ +IL ++P S ++ +
Sbjct: 913  KNIAGHGVFVSLGRNVTARIMIKELFDEY-VKDWKSRFEINQLVSGKILSINPGSNSIEM 971

Query: 256  TLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDV 311
            TL      +    + + + D  +  KVV V R     G+ L I  + VS   + + I+D 
Sbjct: 972  TLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDN 1031

Query: 312  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 352
             + +V +  K ++EG  V+ +I+     +G  +  +KAS F
Sbjct: 1032 RKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKASYF 1072


>gi|444318932|ref|XP_004180123.1| hypothetical protein TBLA_0D00960 [Tetrapisispora blattae CBS 6284]
 gi|387513165|emb|CCH60604.1| hypothetical protein TBLA_0D00960 [Tetrapisispora blattae CBS 6284]
          Length = 1513

 Score =  353 bits (905), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 270/879 (30%), Positives = 452/879 (51%), Gaps = 109/879 (12%)

Query: 952  GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP-----DMKKSFLWELSI 1006
               G I++  ++D +           KIG  +T  +I K ++       MKKS + +   
Sbjct: 701  NLRGVIYVGHLSDSRIEQNRATIKKIKIGSKLTGVVIDKDDRTRVFNLSMKKSLIDDAKN 760

Query: 1007 KPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP 1066
            K   ++ S+I S        +     + GY+  + N    +  +        +L S    
Sbjct: 761  KTLPISFSDIIS--------LDKTTPLHGYIKSISNTGIFVAFNGKFVG--LVLPSYAVE 810

Query: 1067 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT--------VDISNDN 1118
            S   +  + F++ ++VT ++L  ++E +   L L+   +  +D+T        +  S +N
Sbjct: 811  SRDVDINKSFYVNQSVTSYLLRTDEENERFLLTLK---NSKADQTSGAANASAISQSTEN 867

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
            + T I  GD +  RI K+ SG   +++ +G  + G V F       ++D L+ Y      
Sbjct: 868  LDT-IKVGDKIPARIVKV-SG-KHVILDLGNKITG-VSF-------ITDALNDY------ 910

Query: 1179 PLSGYDEGQ-----FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1233
             +S  DE Q      +   V+ I+   +    V LSLR+                 +   
Sbjct: 911  SVSLSDEYQNKLNKTIDATVISINTKAK---KVNLSLRT-----------------NEAK 950

Query: 1234 KHL-EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            +HL E   D+    +V G +KN+   G FI LS  +DA V +S LSD Y++  +K +   
Sbjct: 951  QHLIESHNDIKQGDVVHGLIKNINDSGVFIYLSTNIDAFVPVSKLSDSYLKDWKKFYNPL 1010

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            + V G+V+S E    R+ VTL+ S+        + + S++ VG+I  G +K V  +G+F+
Sbjct: 1011 QHVIGKVVSCES-DDRILVTLRESEV-NGDLKILKDYSSIEVGEIFNGNVKNVTDFGVFV 1068

Query: 1353 TIENT-NLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
             ++NT N+ GL H SE+++D + D++  ++ AG++VK  +L+V+ EK+++SLG+K+SYF 
Sbjct: 1069 KLDNTVNVTGLAHKSEIADDKIPDDLSALFGAGDRVKAIVLRVNAEKKQVSLGLKASYFS 1128

Query: 1411 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV-AVQDMDMESEDGGSLVLAQIESRA 1469
            ND  N      EES+E   E  +  ++  ++N+    V + D ES++   +     E+  
Sbjct: 1129 NDNYN------EESNEKPMEENTEEKTETIQNADADEVIEFDNESDEDVEME----EAEN 1178

Query: 1470 SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEERE-------QEI 1522
            S  P+  N          G+S + G    A  +D+ N+    + + +  E       ++ 
Sbjct: 1179 SKIPISTN----------GLSLSTGFDWTASILDQTNDTEESEDDGDFTEIKKKSKSKKN 1228

Query: 1523 RAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1579
               E++ ++ +  RTP+   +FERL+  +PNSS VW+ YMAF L ++++EKAR IAERAL
Sbjct: 1229 HIVEDKTIDINT-RTPESVADFERLIIGNPNSSVVWMNYMAFQLQLSEIEKAREIAERAL 1287

Query: 1580 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1639
            + IN REE EKLNIW+A  NLEN +G   EE +  VF+RA QY D   +H  L+ +Y+ +
Sbjct: 1288 KIINFREEAEKLNIWIAMLNLENTFG--TEETLEDVFKRACQYMDSYTIHNKLISIYQMS 1345

Query: 1640 EQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKF 1697
            E+   A EL     KKF      +W      LL Q   +  +A++  AL SLP+  HI  
Sbjct: 1346 EKLDRAAELFKTTAKKFGSEKLSIWTSWGDFLLAQNNAQEARAILANALKSLPKRNHIDI 1405

Query: 1698 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757
            + + A LEF  G A+RGRS+FEG++++ PKR D+W++YLDQEI++ +   +  LFER  +
Sbjct: 1406 VKKFAQLEFAKGDAERGRSLFEGLIADAPKRIDIWNVYLDQEIKINEKKKVEDLFERVFT 1465

Query: 1758 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
              +  K+ KF F K+L +E+   +++   YVK KA E+V
Sbjct: 1466 RKITRKQAKFFFNKWLVFEEGQKDDKMTSYVKAKATEFV 1504



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 254/1071 (23%), Positives = 459/1071 (42%), Gaps = 167/1071 (15%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN----------------EIEA 43
            L G +    +KDL +    G+ G   +   +D +  IL++                E   
Sbjct: 121  LLGQITSTTKKDLCVTFTDGISGYVPITHISDHITHILEDIDDDMSDEEEKDECEKEENT 180

Query: 44   NEDNLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 97
            ++ + LP +   F +GQ + C V++   LD   K+  K++I LS+  S++    S E ++
Sbjct: 181  HDFDELPNLNKYFKIGQWLRCSVIKNTALDAVSKKHHKKRIELSIEPSVV-NPFSAEDLE 239

Query: 98   EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRT 156
            +   +   VKS+EDHG  L  GL + TGF+ + ++ +   +   PG + L  + +   R+
Sbjct: 240  KHSTVQCSVKSLEDHGATLDLGLENVTGFISKKDVPDFETL--LPGSVFLANIYKKSGRS 297

Query: 157  RKV-VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 215
              V    S+    VS          SID +VPG MV      I  NG+        +  +
Sbjct: 298  IIVNTNFSAKNSKVSHIS-------SIDAVVPGQMVDFLCDDISSNGISGKIFGLVSSFI 350

Query: 216  DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGD 275
             I HL+ TF     K  Y+    +  RI+                LL+       V +  
Sbjct: 351  GISHLR-TFTEEELKETYSAGSNIKCRII--------------ASLLNKN--DERVLIVS 393

Query: 276  IYDQSKVVRVDRGLGLLLDIPSTPV-----------STPAYVTISDVAEEEVRKLEKKYK 324
              DQ  +V +D  +     I + P+           S   +V ++    E++     + K
Sbjct: 394  TLDQ--IVSLDNNIAQTEAIEAFPIGYTFDSASFLGSDSDFVYLA--LNEDLFGAVHRSK 449

Query: 325  EGSC-----VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSF 378
             G       ++ R++G+  ++ +       +A +      +D+  G +V G ++I V S 
Sbjct: 450  LGDIHISGDIQARVIGYNTIDKIYQLSTDPNALKLKYIRAADIPNGELVTGCEIINVSSD 509

Query: 379  GAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLV 436
            G  ++ F G   A  P  H+S+ ++  P +KFK+G+++  R+L V K   I +T KK+LV
Sbjct: 510  GIELKIFNGQFSAFVPPLHISDVKLSYPERKFKIGSKIKGRILEVTKRGHIIMTLKKSLV 569

Query: 437  KSKLAILSSYAEA----TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 492
              +  I+  Y  A         T   +   + +GC + F+ G++GF P SE+      +P
Sbjct: 570  NDENKIVDDYVSAKQLQNKNEKTVATVESFKPNGCLISFFGGLRGFLPNSEISEAFVRKP 629

Query: 493  SSMYHVGQVV----------KCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGV 542
                 +GQ V          + R+++S  AS   +     +  +++ + LV   S++   
Sbjct: 630  EQHLRLGQTVIIKILDVDEKRFRVIASCKASNEDS-----QAQKLAIEKLVLGRSIIEVN 684

Query: 543  VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVLDNE 599
            V   T ++VVV   A    +G I   HL+D       AT+ K  IK G +   +++  ++
Sbjct: 685  VVEKTKDSVVVED-ADSNLRGVIYVGHLSDSRIEQNRATIKK--IKIGSKLTGVVIDKDD 741

Query: 600  SSNLL-LSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
             + +  LS K SLI+ A+   LP   SD   +   + +HGY+ +I  TG FV F G+  G
Sbjct: 742  RTRVFNLSMKKSLIDDAKNKTLPISFSDIISLDKTTPLHGYIKSISNTGIFVAFNGKFVG 801

Query: 654  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 713
                S AV+ +  D++K++YV QSV S +L  + E  R  L+LK S    T  +      
Sbjct: 802  LVLPSYAVESRDVDINKSFYVNQSVTSYLLRTDEENERFLLTLKNSKADQTSGA------ 855

Query: 714  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 773
                  + +  S  N   +K      +G  I  ++ + +   V++          FIT  
Sbjct: 856  ---ANASAISQSTENLDTIK------VGDKIPARIVKVSGKHVILDLGNKITGVSFIT-D 905

Query: 774  QLAGATV--------ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 825
             L   +V        +    I A ++ +    + V+LSL+T               + K+
Sbjct: 906  ALNDYSVSLSDEYQNKLNKTIDATVISINTKAKKVNLSLRT--------------NEAKQ 951

Query: 826  RKREASKDLGVHQTVNAIVEIVKEN----YLVLSLPEYNHSIGYASVSDYNTQKFPQKQF 881
               E+  D+     V+ +++ + ++    YL  ++  +   +  + +SD   + +  K+F
Sbjct: 952  HLIESHNDIKQGDVVHGLIKNINDSGVFIYLSTNIDAF---VPVSKLSDSYLKDW--KKF 1006

Query: 882  LNG-QSVIATVMALPSSSTAGRLLLLLKAISETETSSS-KRAKKKSSYDVGSLVQAEITE 939
             N  Q VI  V++  S     R+L+ L+   E+E +   K  K  SS +VG +    +  
Sbjct: 1007 YNPLQHVIGKVVSCESDD---RILVTLR---ESEVNGDLKILKDYSSIEVGEIFNGNVKN 1060

Query: 940  IKPLELRLKFG--IGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
            +    + +K    +   G  H +E+ DDK  + ++L + F  G  V A ++
Sbjct: 1061 VTDFGVFVKLDNTVNVTGLAHKSEIADDK--IPDDLSALFGAGDRVKAIVL 1109



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 122/564 (21%), Positives = 226/564 (40%), Gaps = 91/564 (16%)

Query: 309  SDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS---------AFEGLVFTH 359
            S+++E  VRK E+  + G  V ++IL             KAS         A E LV   
Sbjct: 619  SEISEAFVRKPEQHLRLGQTVIIKILDVDEKRFRVIASCKASNEDSQAQKLAIEKLVLGR 678

Query: 360  SDVKPGMVVKGK--VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG---KKFKVGAE 414
            S ++  +V K K  V+  D+          ++ +  + H+S+  I +     KK K+G++
Sbjct: 679  SIIEVNVVEKTKDSVVVEDA-------DSNLRGVIYVGHLSDSRIEQNRATIKKIKIGSK 731

Query: 415  LVFRVLGV--KSKRITVTHKKTLV---KSK-LAILSSYAEATDRLIT-HGWITKIEKHGC 467
            L   V+    +++   ++ KK+L+   K+K L I  S   + D+    HG+I  I   G 
Sbjct: 732  LTGVVIDKDDRTRVFNLSMKKSLIDDAKNKTLPISFSDIISLDKTTPLHGYIKSISNTGI 791

Query: 468  FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RIMSSIPASRRIN 517
            FV F     G    S        + +  ++V Q V            R + ++  S+   
Sbjct: 792  FVAFNGKFVGLVLPSYAVESRDVDINKSFYVNQSVTSYLLRTDEENERFLLTLKNSKADQ 851

Query: 518  LSFMMKPTRVSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
             S     + +S+     D +K+G  +   +  V+   V++  +    +  +  T+ L D+
Sbjct: 852  TSGAANASAISQSTENLDTIKVGDKIPARIVKVSGKHVILD-LGNKITGVSFITDALNDY 910

Query: 574  L-----EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN 628
                  E+   +   I        ++ ++ ++  + LS + +   + Q L    + I   
Sbjct: 911  SVSLSDEYQNKLNKTIDA-----TVISINTKAKKVNLSLRTN--EAKQHLIESHNDIKQG 963

Query: 629  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
             VVHG + NI ++G F+     +  F P SK  D    D  K Y   Q V   ++   S+
Sbjct: 964  DVVHGLIKNINDSGVFIYLSTNIDAFVPVSKLSDSYLKDWKKFYNPLQHVIGKVVSCESD 1023

Query: 689  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
              RI ++L++S  +  D   ++++  +E                       +G +  G V
Sbjct: 1024 -DRILVTLRESEVNG-DLKILKDYSSIE-----------------------VGEIFNGNV 1058

Query: 749  HESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGSVIQAAILDVAKAERLV 800
                DFGV V  +   +V G     ++A         A   +G  ++A +L V   ++ V
Sbjct: 1059 KNVTDFGVFVKLDNTVNVTGLAHKSEIADDKIPDDLSALFGAGDRVKAIVLRVNAEKKQV 1118

Query: 801  DLSLKTVFIDRFREANSNRQAQKK 824
             L LK  +   F   N N ++ +K
Sbjct: 1119 SLGLKASY---FSNDNYNEESNEK 1139



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 12/231 (5%)

Query: 1196 ISRTVRGTFHVELSLRSSLDGMSSTNS-SDLSTDVDTPGKHLEKIEDLSPNMIVQGY-VK 1253
            + R+  G  H+   +++ + G ++ +    LSTD +       +  D+    +V G  + 
Sbjct: 445  VHRSKLGDIHISGDIQARVIGYNTIDKIYQLSTDPNALKLKYIRAADIPNGELVTGCEII 504

Query: 1254 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1312
            NV+S G  + + + +  A V   ++SD  +  PE++F IG  + GR+L V   +KR  + 
Sbjct: 505  NVSSDGIELKIFNGQFSAFVPPLHISDVKLSYPERKFKIGSKIKGRILEV---TKRGHII 561

Query: 1313 LKTSDSRTASQSEI--NNLSNLHVGDIVIGQIKRVESY---GLFITIENTNLVGLCHVSE 1367
            +    S    +++I  + +S   + +     +  VES+   G  I+     L G    SE
Sbjct: 562  MTLKKSLVNDENKIVDDYVSAKQLQNKNEKTVATVESFKPNGCLISFFG-GLRGFLPNSE 620

Query: 1368 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            +SE  V   E   R G+ V +KIL VD+++ R+    K+S   + A  L +
Sbjct: 621  ISEAFVRKPEQHLRLGQTVIIKILDVDEKRFRVIASCKASNEDSQAQKLAI 671


>gi|432848327|ref|XP_004066290.1| PREDICTED: protein RRP5 homolog [Oryzias latipes]
          Length = 1814

 Score =  352 bits (904), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 339/1366 (24%), Positives = 624/1366 (45%), Gaps = 125/1366 (9%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--LPTIFHV 55
            M + G V  V + ++ + LP GL+G   +    D+   +L +++E+++  +  LP +FH 
Sbjct: 86   MLMLGCVKTVADFEVSVGLPCGLQGFLSIKNICDSYTKLLSDQLESDDAEICSLPHLFHP 145

Query: 56   GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
            G ++ C+V QLD  K   G   I LS+   L+ K ++  +++ GMVL+  V+S+EDHG I
Sbjct: 146  GMVLRCVVAQLDVTKG--GSLSIQLSINPKLVNKSVTSSSLKAGMVLSGCVESVEDHGCI 203

Query: 116  LHFGLPSFTGFLPRNNLA--ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 173
            +  G+     FLP   +   +N   +++ G  L  +V  +    +VV LS +P  V++  
Sbjct: 204  IDIGVNGTKAFLPEEAMKTEQNQLRELRLGQYLTCLVERVKNDGRVVSLSVNPAAVAQAC 263

Query: 174  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 233
             +  +G S+  L+PG++V + V+ + ++G++L FL+ F+G VD  H++   PT+     Y
Sbjct: 264  AEPRQGWSLSNLLPGLLVKSTVKKVTKHGLLLDFLSSFSGQVDFLHMEPE-PTST----Y 318

Query: 234  NQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVVRVDRG 288
             +  +V A +L+V+P+SR VGL+L  +LL        +P    ++G++    K+  +   
Sbjct: 319  TEGLQVQACVLYVEPSSRLVGLSLRRHLLQPSSGIEPSPAEGDRIGEVLKGCKLAAMHHK 378

Query: 289  LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 348
             G +L++P     +PA+V  + + E      E +         RIL F  +E +    L+
Sbjct: 379  SGAVLELPD---GSPAFVHRNHLKEPNEPTNENRVYAAPEHTCRILDFSPMEQIHFATLR 435

Query: 349  ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 408
             S  E   + + D+K G VV+G V  + S G +V     +K L P  H+S+  +  P KK
Sbjct: 436  KSVIEKPFYRYQDLKAGQVVEGTVSVLLSHGMVVHLSDHIKGLVPRTHLSDIVLKNPEKK 495

Query: 409  FKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 466
            +  G ++  RVL V  + K++ +T KK LV+S L +  +Y++A    ++HG++  I+  G
Sbjct: 496  YAPGMKVKCRVLSVDPEGKKLYLTRKKALVESPLPLFLTYSDARPGRVSHGYVVCIKDFG 555

Query: 467  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF------ 520
            C VRFYN V+G  P SEL  +P   P  +++VGQV+K  ++   P   ++ LSF      
Sbjct: 556  CIVRFYNDVKGLVPLSELSSEPVVHPEDVFYVGQVLKAAVLQCDPERSKMILSFKAAVEG 615

Query: 521  -MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 579
               + T    D    +G  +   V   + N + V ++     +  +PT HL+DH+ +  +
Sbjct: 616  GAAEATEAHVD--CDVGKRLEAKVVKKSVNGLEVAILPDEI-RAILPTMHLSDHVSNCPL 672

Query: 580  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL--INSAQQLPSDASHIHPNSVVHGYVCN 637
            +   ++ G      +  +  + N+ L+ K ++  I     +  + S +     + G+V N
Sbjct: 673  LWESLQEGDVISDAVCFNRINLNITLTKKPAVRRILEEGAVAKNFSELTVGMQLVGWVKN 732

Query: 638  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR--ITLS 695
            I+  G FV F   L G AP+S   D   +D +  + +GQ+V + + +++ E  R  +TL 
Sbjct: 733  IMPYGVFVEFPYGLLGLAPKSAMSDKFISDATAAFQLGQTVFAKVTNLDEEKRRFLVTLK 792

Query: 696  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDF 754
            + +  C   D      + L E K      S  +G+EL + +    +G  +   V    D 
Sbjct: 793  ISEVICPEGDVYTRLINGLQERKAVKEMMSSRDGAELAQSLAALSVGERLMLTVDSVKDS 852

Query: 755  GVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
            G +   +  +      +   + G  +  G  + A +L        VDL    V++    +
Sbjct: 853  GAIFKSDRLTSATVLASKQHMTGVNLTVGQKVSAPVLH-------VDLLSACVYVSVLPK 905

Query: 815  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 874
                ++   K  +              A V+ V  ++ V+SL +        + +  N  
Sbjct: 906  LVGKKKTLNKGYR------------YTATVQHVDTDFAVVSLGDTAQLAVIQTRNHLNEV 953

Query: 875  KFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLL--KAISETETSSSKRAKKKSSYDVGS 931
               + + L+ G++    V+        G  L+    +A     T+S  +A  +  +  G 
Sbjct: 954  VIHESEKLDVGRTFPVQVVEASCEELQGLPLVSWEHRAPQRQRTTSEGQAGSR-GHRFGE 1012

Query: 932  LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL-FSNFKIGQTVTARII-- 988
             +Q  +  +KP  +++    G  G +H+++V +     V +   S+ K+G  VTAR+I  
Sbjct: 1013 FLQGTVRAVKPTCIQVTLEDGSKGSVHVSQVVEPSQVRVGSFPTSSVKVGSRVTARVIGG 1072

Query: 989  --AKSNK--PDMKKSFLW---ELSIKPSMLTVS-EIGSKLLFEECDV-SIGQRVTGYVYK 1039
              A SN+  P     F +   EL++ PS L  + ++ S    E+ ++   G  +T +V K
Sbjct: 1073 WEASSNRFLPFSHPRFTYTIPELTLIPSKLDENVDLPSVSAKEKLELYKAGDEITCFVSK 1132

Query: 1040 --VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1097
               D     +T    +   + +L    +P +    ++ + +G+AV   V+ +  +     
Sbjct: 1133 FHADRRSLEVTTDPSVTGTVELLAMITDPKDAGHPEKLYKLGQAVRAKVVEVGVKPSRFV 1192

Query: 1098 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH- 1156
            L L     G+               + EG           S   G+V  + P L  +V  
Sbjct: 1193 LSL----TGVHK-------------LQEG-----------SSSLGIVTAVHPQLGLQVKL 1224

Query: 1157 -FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1215
             F+      V D    Y   Q   LS + +GQ V+C +L   +     +H  LSLR    
Sbjct: 1225 PFSNTGTASVMDLTDAYRPNQ---LSVFSKGQLVRCFLLCQEKE---KWH--LSLRP--- 1273

Query: 1216 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1275
              S  NS       D     ++ +++L    I++G+VK+V  +G FI LSR +  +  L 
Sbjct: 1274 --SRLNSKQPKAVKDP---EVKTLDELQAGQIIRGFVKSVGEQGVFIRLSRTIIGRAQLQ 1328

Query: 1276 NLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
              +  +V S     +      L++ +VLS++   + VE++L  +D+
Sbjct: 1329 QATQYFVNSHSVLAEHLQPNSLLSTKVLSIDKEKEFVELSLLPADT 1374



 Score =  288 bits (736), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 188/576 (32%), Positives = 299/576 (51%), Gaps = 57/576 (9%)

Query: 1276 NLSDGYVESPEKEFPIGKLVAGRVLSVEP----LSKRVEVTLKTSDSRTASQSEINNLSN 1331
            +L+D Y  +    F  G+LV   +L  E     LS R    L +   +     E+  L  
Sbjct: 1236 DLTDAYRPNQLSVFSKGQLVRCFLLCQEKEKWHLSLRPS-RLNSKQPKAVKDPEVKTLDE 1294

Query: 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKV 1388
            L  G I+ G +K V   G+FI +  T ++G   + + ++  V++   +    +    +  
Sbjct: 1295 LQAGQIIRGFVKSVGEQGVFIRLSRT-IIGRAQLQQATQYFVNSHSVLAEHLQPNSLLST 1353

Query: 1389 KILKVDKEKRRISLGM------KSSYFKNDAD-NLQMSSEEESDEAI-----------EE 1430
            K+L +DKEK  + L +      K        D  L+++ E++    +           E+
Sbjct: 1354 KVLSIDKEKEFVELSLLPADTGKPDVLPESLDLPLRLTGEQKQKHDLRQKRKRQLSEGEQ 1413

Query: 1431 VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP------- 1483
             G  ++           +    + ED G  V  + E        +     E P       
Sbjct: 1414 KGEESQIPTKNKKKKEKRRAKADGEDSGVEVYFREEDEDEEAEDKPRRSKETPGSSGPSR 1473

Query: 1484 -DMDNGISQNQG-----------HTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1531
              +  G S ++G             + +   D+  +   +KK + E EQ+ +AAE  L++
Sbjct: 1474 LQVTAGFSWDEGLSALKPPSAAQDAESSDAEDQDRSEKTQKKSRRELEQQKKAAERALVQ 1533

Query: 1532 KDA--------PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1583
            ++A        P+    FERL+ +SPNSS +W++YMA  L    +E+ARS+AERAL+TI+
Sbjct: 1534 REAELMDPNLRPQDDSAFERLILASPNSSLLWLQYMAHHLQATQIEQARSVAERALKTIS 1593

Query: 1584 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1643
             REE EKLN+WVA  NLEN YG   EE++ KVF+RA+Q+C+P  V+  L  +Y ++ + K
Sbjct: 1594 FREEQEKLNVWVALLNLENMYGT--EESLKKVFERAVQFCEPMPVYQQLADIYSKSNKTK 1651

Query: 1644 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1702
             A+ L   M+K+F+ +  VWL     LL+Q Q +   A++QRAL SLP  + +  I++ A
Sbjct: 1652 EAESLYKTMVKRFRQNKGVWLSYGTFLLQQGQSDAASALLQRALASLPAKESVDVIAKFA 1711

Query: 1703 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1762
             LEF+ G  + GR+M + +L+ YPKRTDLWSI++D EI+ G    +R LF+R I LS+  
Sbjct: 1712 QLEFRYGNPETGRNMLDKVLTSYPKRTDLWSIFIDLEIKHGSQKEVRALFDRVIHLSVSA 1771

Query: 1763 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            KK+KF FK+YLEYEK  G  + ++ VK KA+E+VE+
Sbjct: 1772 KKIKFFFKRYLEYEKKHGTAQSVQDVKDKAVEFVEA 1807



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 111/257 (43%), Gaps = 32/257 (12%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            G +V G +S +LS   G+VV +  H+ G V  T L +I + +P     E ++ P      
Sbjct: 452  GQVVEGTVSVLLSH--GMVVHLSDHIKGLVPRTHLSDIVLKNP-----EKKYAP------ 498

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            G  VKC+VL +    +  +   L+ + +L              V++P        D  P 
Sbjct: 499  GMKVKCRVLSVDPEGKKLY---LTRKKAL--------------VESPLPLFLTYSDARPG 541

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             +  GYV  +   GC +     +   V LS LS   V  PE  F +G+++   VL  +P 
Sbjct: 542  RVSHGYVVCIKDFGCIVRFYNDVKGLVPLSELSSEPVVHPEDVFYVGQVLKAAVLQCDPE 601

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
              ++ ++ K +    A+++   ++ +  VG  +  ++ +    GL + I    +  +   
Sbjct: 602  RSKMILSFKAAVEGGAAEATEAHV-DCDVGKRLEAKVVKKSVNGLEVAILPDEIRAILPT 660

Query: 1366 SELSEDHVDNIETIYRA 1382
              LS DHV N   ++ +
Sbjct: 661  MHLS-DHVSNCPLLWES 676



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
            N S L VG  ++G +K +  YG+F+      L+GL   S +S+  + +    ++ G+ V 
Sbjct: 716  NFSELTVGMQLVGWVKNIMPYGVFVEFP-YGLLGLAPKSAMSDKFISDATAAFQLGQTVF 774

Query: 1388 VKILKVDKEKRRISLGMKSS 1407
             K+  +D+EKRR  + +K S
Sbjct: 775  AKVTNLDEEKRRFLVTLKIS 794


>gi|58267098|ref|XP_570705.1| rRNA processing-related protein [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226939|gb|AAW43398.1| rRNA processing-related protein, putative [Cryptococcus neoformans
            var. neoformans JEC21]
          Length = 1484

 Score =  350 bits (899), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 226/693 (32%), Positives = 377/693 (54%), Gaps = 50/693 (7%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            I  G I+ G + +  S   G +VQ+  +L GRVH       C S        G   PL+ 
Sbjct: 808  IEVGQIITGTVQEQTSQ--GYMVQLPNNLRGRVH------PCDSSDDLALAAGH-GPLT- 857

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
               G+ VKC VL+++R+ R    ++LS R S + G  +    +++T           ++D
Sbjct: 858  --VGEEVKCYVLDVNRSKRA---IDLSTRLSRVQGKENVVDREINT-----------VDD 901

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L     V+G VKN+   G F+ L R + A++++  L D YV+  +  F I +LV+G++LS
Sbjct: 902  LKEGESVRGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWKSRFEINQLVSGKILS 961

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
            + P S  +E+TL+ + S++A ++ + +LS+   G  V+  +++VE+YG+F+ IE +N+ G
Sbjct: 962  INPGSNSIEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSG 1021

Query: 1362 LCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            LCH SE++++   ++      +R G++VK KI+ +D EK +IS G+K+SYF  + +  + 
Sbjct: 1022 LCHKSEITDNRKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKASYFGEEFEGGEK 1081

Query: 1419 SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNL 1478
            S +E+ +   E    +N       S         E ED  +L +   E  A+    +   
Sbjct: 1082 SEDEDDEVDEENDERFNEGDQEMESDAGESGEGQEHEDEEALEIDGGEEEATSDEEDNAP 1141

Query: 1479 DDEQPDMDNGISQNQGH--TDEAKTIDEKNNRH----------AKKKEKEEREQEIRAAE 1526
             + +P     ++   G   T EA     +++            AK K K +       A 
Sbjct: 1142 QNFKPAPKTALNLGAGFDWTGEAPAAAPESDDESDSDEEAVAPAKSKGKSKAVDLTATAP 1201

Query: 1527 ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1586
                    P +  E+ER + +SPNSSF+WI+YM+F L + ++EKAR I  +AL+ I+ RE
Sbjct: 1202 -----SSRPSSTGEYERALLASPNSSFLWIQYMSFHLQLHEIEKARKIGRQALEKISYRE 1256

Query: 1587 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1646
            E EKLN+W+A  NLE  +G     A  KVF+ A QY D + V++      +   +++  +
Sbjct: 1257 EEEKLNVWMALINLEIAFGTV--SATEKVFEEAAQYNDKRTVYMRYAEALQVAGKDEALE 1314

Query: 1647 ELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1705
            EL  K++KKF    + W R  +  L K   E  +A++ R++ SL + KH++ I + A+LE
Sbjct: 1315 ELFKKIVKKFSAYPESWTRFAEFYLNKGDVEAARALLPRSMKSLDKSKHVETIEKMALLE 1374

Query: 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765
            FK G A+RG+++FEG++  +PKR DLW +Y+DQ  ++GD+  +RGL +RA+   L  KK 
Sbjct: 1375 FKQGDAERGKTLFEGLVDRFPKRLDLWGVYIDQVAKVGDIQGVRGLMDRALEQKLTSKKA 1434

Query: 1766 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            KFLFKK+L  E+ +G+    +  K +A E+VE+
Sbjct: 1435 KFLFKKWLTIEQRIGDAAGQDKAKTRAREWVEA 1467



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 158/648 (24%), Positives = 283/648 (43%), Gaps = 55/648 (8%)

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRNNLAEN-SGIDVKPGLLLQGV 149
           ++ G  L   VKS ED G+I+  GL      S  GF+ ++ +A+      + PG LL   
Sbjct: 247 LETGYFLVGEVKSEEDKGWIVGVGLNTQGGSSVEGFVSKDEVAKFVPAQALIPGQLLPAT 306

Query: 150 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 209
           + SI    +V +LS +   +++    ++   ++  +VPG  V+  + +++ +G+ +    
Sbjct: 307 ISSIAAGGRVAHLSLNQQDITRSQISEVS--TVGSIVPGHSVNALITAVVPSGLNVKVAG 364

Query: 210 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF----VDPTSRAVGLTLNPYLLHNR 265
           +F GT+D+ HL       + +N Y   KK+ AR+++     +P S A  L+  P++L+  
Sbjct: 365 FFDGTIDLAHL--PLGEDDIENKYKIGKKIRARVIYDNLAANPHSFA--LSALPHVLNFT 420

Query: 266 APPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 316
           +P            + +G +Y   KV RV    G+++    T      +V IS +A+E +
Sbjct: 421 SPTQEGDNTPLELAIPIGKVYQSVKVTRVLNDWGVMV---RTQDGLEGFVHISHLADERI 477

Query: 317 RKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
             L     ++K G+  R R++G   ++G+     + S    L     ++K G  +KG + 
Sbjct: 478 PVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLSQLFMQVDELKVGQQLKGTIR 537

Query: 374 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTH 431
            +      V   G V  +    H ++  +  P K+FK    +  RVL ++    R+ +T 
Sbjct: 538 RLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEGSVKARVLYLEPTRNRVVLTL 597

Query: 432 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 491
           KKT ++S LA+   + +     +T G + KI   G  V  + G++ F P SE        
Sbjct: 598 KKTFLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTHIKN 657

Query: 492 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPN 549
            S  +++G+ +  R+++   ++ RI +S              KL  G  VSG V  V   
Sbjct: 658 LSEAFYIGKPLTVRVITVDASASRIVVSAKQAAPTAPATAAEKLEVGEAVSGTVSQVHTE 717

Query: 550 AVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD-NESSNLL-- 604
            VVV +   G +   +   +L++   H  +  ++  +K G + D L+V+  N  S L+  
Sbjct: 718 QVVVKLDGNGLT-ALLSLSNLSNQ-RHTGIEELRRSLKEGEKIDDLVVVSKNPVSGLIIV 775

Query: 605 -----LSAKYSLINSAQQLPSDAS-------HIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
                ++AK        + PS  S        I    ++ G V      G  V+    L 
Sbjct: 776 NIKKTITAKKEKAKKEDKAPSGISAHVKAIDAIEVGQIITGTVQEQTSQGYMVQLPNNLR 835

Query: 653 G-FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G   P   + D   A       VG+ V+  +LDVN     I LS + S
Sbjct: 836 GRVHPCDSSDDLALAAGHGPLTVGEEVKCYVLDVNRSKRAIDLSTRLS 883



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 123/536 (22%), Positives = 222/536 (41%), Gaps = 89/536 (16%)

Query: 239  VNARILFVDPTSRAVGLTLN-PYLLHNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLD 294
            V AR+L+++PT   V LTL   +L  + A P     +KVG++   S +  VD+G+     
Sbjct: 579  VKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGV----- 633

Query: 295  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL---KASA 351
            I        A++  S+ ++  ++ L + +  G  + VR++    ++  A+ I+   K +A
Sbjct: 634  IVELFAGLKAFMPHSECSQTHIKNLSEAFYIGKPLTVRVI---TVDASASRIVVSAKQAA 690

Query: 352  FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE---------FE 401
                      ++ G  V G V  V +   +V+  G G+ AL  L ++S            
Sbjct: 691  PTAPATAAEKLEVGEAVSGTVSQVHTEQVVVKLDGNGLTALLSLSNLSNQRHTGIEELRR 750

Query: 402  IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI---------LSSYAEATDR 452
             +K G+K     +LV       S  I V  KKT+   K            +S++ +A D 
Sbjct: 751  SLKEGEKID---DLVVVSKNPVSGLIIVNIKKTITAKKEKAKKEDKAPSGISAHVKAIDA 807

Query: 453  L----ITHGWITKIEKHGCFVRFYNGVQGFA----PRSELGLDPGCEPSSMYHVGQVVKC 504
            +    I  G + +    G  V+  N ++G         +L L  G  P +   VG+ VKC
Sbjct: 808  IEVGQIITGTVQEQTSQGYMVQLPNNLRGRVHPCDSSDDLALAAGHGPLT---VGEEVKC 864

Query: 505  RIMSSIPASRRINLSFMMKPTRVSED---------DLVKLGSLVSGVVDVVTPNAVVVYV 555
             ++    + R I+LS  +   +  E+         D +K G  V G+V  +  + V V +
Sbjct: 865  YVLDVNRSKRAIDLSTRLSRVQGKENVVDREINTVDDLKEGESVRGLVKNIAGHGVFVSL 924

Query: 556  IAKGYSKGTIPT---EHLADHLEHATVMKSV------IKPGYEFDQLLVLDNESSNLLLS 606
                 ++  I     E++ D      + + V      I PG    ++ +  N S +   +
Sbjct: 925  GRNVTARIMIKELFDEYVKDWKSRFEINQLVSGKILSINPGSNSIEMTLRKNPSKSAKKT 984

Query: 607  AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQR 665
            A  SL           S       V   V  +   G F++  G  ++G   +S+  D ++
Sbjct: 985  ALLSL-----------SDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDNRK 1033

Query: 666  ADLS---KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 718
            AD++   K +  G  V++ I+ +++E G+I+  +K        AS+  E F   EK
Sbjct: 1034 ADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIK--------ASYFGEEFEGGEK 1081



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 131/274 (47%), Gaps = 18/274 (6%)

Query: 92   SLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGIDVKPGLLLQG-- 148
            +++ ++ G ++T  V+     GY++   LP+   G +   + +++  +    G L  G  
Sbjct: 804  AIDAIEVGQIITGTVQEQTSQGYMVQ--LPNNLRGRVHPCDSSDDLALAAGHGPLTVGEE 861

Query: 149  ---VVRSIDRTRKVVYLSSDPDTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
                V  ++R+++ + LS+    V      V +++   ++D L  G  V   V++I  +G
Sbjct: 862  VKCYVLDVNRSKRAIDLSTRLSRVQGKENVVDREIN--TVDDLKEGESVRGLVKNIAGHG 919

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            V +S     T  + I  L + +   +WK+ +  ++ V+ +IL ++P S ++ +TL     
Sbjct: 920  VFVSLGRNVTARIMIKELFDEY-VKDWKSRFEINQLVSGKILSINPGSNSIEMTLRKNPS 978

Query: 263  HNRAPPSHVKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRK 318
             +    + + + D  +  KVV V R     G+ L I  + VS   + + I+D  + +V +
Sbjct: 979  KSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDNRKADVAQ 1038

Query: 319  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 352
              K ++EG  V+ +I+     +G  +  +KAS F
Sbjct: 1039 ALKGFREGDQVKAKIVSIDTEKGKISFGIKASYF 1072


>gi|448118427|ref|XP_004203493.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
 gi|448120825|ref|XP_004204076.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
 gi|359384361|emb|CCE79065.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
 gi|359384944|emb|CCE78479.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
          Length = 1712

 Score =  348 bits (892), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 259/893 (29%), Positives = 470/893 (52%), Gaps = 82/893 (9%)

Query: 927  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVT 984
            Y VG + +A I  I+  +L ++      GR+ +T+  +D S + +     S F     +T
Sbjct: 868  YSVGVVTKAIIKSIRGTQLNVQLSDNLQGRVDVTQCFNDWSEIKDKKQPLSKFAKNTEIT 927

Query: 985  ARII----AKSNK--PDMKKSFLWELSIKPSMLT-----VSEIGSKLLFEECDVSIGQRV 1033
             ++I    AK++K  P   +    +L ++ SML+      +E    +L    D+  G  V
Sbjct: 928  VKVIGYHDAKNHKFLPITHRKSAKQLILELSMLSREIEKPNEPYRDVLLR--DIPEGSEV 985

Query: 1034 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1093
              +V  +   +  ++++ +L+  + ++D + + S  ++ + +  IG A+      I+ E 
Sbjct: 986  VCFVNNIVKGFVWVSLTPNLRGHISLMDLSDDVSVYEDLENKVPIGMAIKATAKEIDSEH 1045

Query: 1094 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1153
              L L  R         T++   D     +  G  V  RI K+      ++VQ+G  L  
Sbjct: 1046 NSLVLTARK-------NTLNSIKD-----VKVGQKVPARIIKVKETY--VLVQLGDKL-- 1089

Query: 1154 RVHFTELKNICVSDPLSGYDEGQFDPLSG-YDEGQFVKCKVLEISRTVRGTFHVELSLRS 1212
                  + +  ++D L+ Y     D LS  +   +F    +L +         V +SLR+
Sbjct: 1090 ------IASSFITDALNNYS----DKLSDVFHVNEFACATILAVDE---ANDKVAVSLRN 1136

Query: 1213 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1272
                     +SD         K +   +DL    +V+G+VKN+ + G ++ L R + A V
Sbjct: 1137 QY-------ASD---------KLITSHKDLKQEDVVRGFVKNIANNGVYVSLGRTVHALV 1180

Query: 1273 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1332
             +S+LSD Y++  +K F   + V G+V ++    K + +TLK S+      + +   ++L
Sbjct: 1181 RVSDLSDSYLKDWKKFFKPNQPVIGKVSAINEDGK-ILLTLKESEVY-GKLNVLKKFNDL 1238

Query: 1333 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1391
             VGDI  G IK+V ++G+F+ ++ T  + GLCH SE+++  + ++ +++  G++VKVK+L
Sbjct: 1239 KVGDIFEGSIKQVTNFGVFVKLDGTVGVTGLCHHSEIADKTITDVSSLFGEGDRVKVKVL 1298

Query: 1392 KVDKEKRRISLGMKSSYF-------KNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSS 1444
             +D+ K+++SLGMK+SYF       K+DA++++MS+E    E        +++   +   
Sbjct: 1299 AIDESKKQLSLGMKASYFTDGSVSEKDDAEDVEMSNEGSEMEEDSSSDDEDQNDSDDEVM 1358

Query: 1445 VAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDE 1504
                D + E  D  S   +  ++   V  L  N  D    + + +   +  +DE     E
Sbjct: 1359 DDAFDGNEEDSDSASEEESTQKNDDKVTGLSTNGFDWTASILDQVQDEESSSDEEDFTRE 1418

Query: 1505 KNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1564
            K ++   K + +++  +I +         AP++  +FERL+ ++ +SS +W+ YM+F L 
Sbjct: 1419 KPSKKKSKAQVKDKTADINSR--------APQSVSDFERLLIANSDSSILWMNYMSFQLQ 1470

Query: 1565 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1624
            + +++KAR I ERAL++IN REE EK+NIW+A  NLEN +G+  +E++ + F+R+ QY D
Sbjct: 1471 LGEIDKAREIGERALKSINFREEQEKMNIWIALLNLENTFGS--DESLTETFKRSCQYMD 1528

Query: 1625 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQ 1683
               +H  ++G++  +E+   A  L   MIKKF  +  VW++    LL ++  E V  ++ 
Sbjct: 1529 SLIMHQKMVGIFVLSEKYDKASSLYNTMIKKFGKNVNVWVQYASYLLDREMNEEVHEILA 1588

Query: 1684 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1743
            R+L +LP+ +HI+ + + A LEF  G  ++GRS+FEG++++ PKR DLW++Y+DQEI+ G
Sbjct: 1589 RSLQALPKKEHIEVVRKFAQLEFTKGDPEQGRSLFEGLIADAPKRIDLWNVYIDQEIKKG 1648

Query: 1744 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            D   +  LFER ++  L  K+ +F F K+  +E SVG++  +  VK KAMEYV
Sbjct: 1649 DKKKVEDLFERVVTKKLSKKQARFFFNKWHSFEDSVGDQAAVARVKAKAMEYV 1701



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 180/696 (25%), Positives = 324/696 (46%), Gaps = 50/696 (7%)

Query: 41  IEANEDNLLPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 97
           I  +E   LP++   F +G  +   V + D+++K    ++I LS+   +L + L  E + 
Sbjct: 168 ISTSEKKQLPSLQDLFTLGSWLIAKVYKPDNERK----KRIQLSVEPHVLNRSLEKEDLI 223

Query: 98  EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR 157
            G ++   + S+EDHG IL+ GLP+  GF+   ++A +SG D       Q ++ SI    
Sbjct: 224 SGNIMQCSIISVEDHGVILNTGLPNLGGFISNKDIA-SSGRDFDSLHAGQVILCSIINKP 282

Query: 158 KVVYLSSDP-DTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 213
               +   P D+V+     VT  +   SID + PG +V   V  I +NG++L        
Sbjct: 283 SGRTIGLKPLDSVAGSKNYVTSSIS--SIDAIQPGSLVDALVSEITKNGLVLKVFGMVDA 340

Query: 214 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLL-------HN 264
           T+++ +L   +     K+ Y     + AR+  V P +    L L+  P +         +
Sbjct: 341 TINLANLH-VYDYQELKHKYTVSNTIKARVTAVLPRAGTKRLMLSHLPQITSLSTARNDD 399

Query: 265 RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 324
             P      G I++ + V+  D    + ++I ++ +    +V+  D      + L   Y 
Sbjct: 400 FNPLEAFPTGYIFEDATVISHDTNY-IYVNIGTSYLQAQVHVSRIDPD----KTLSIDYY 454

Query: 325 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV-KGKVIAV--DSFGAI 381
            GS  + R++G+   E L     +         + SD+  G  + K +V+ +  +S G  
Sbjct: 455 SGSKHKARVVGYNKYENLLVLSFEPKVINAPYLSVSDIPDGTFIEKCEVLKILPNSGGLE 514

Query: 382 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKL 440
           V+      A+ P  HMS+  +V P +KF++G ++  RVL  + K + +T KK+LV     
Sbjct: 515 VKVFDEFNAIVPPEHMSDIRLVYPERKFRIGGKVKSRVLSKRGKNLFITIKKSLVNIEDQ 574

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
            +LS++ +A     T   I K   +G  V F+  ++ F P+SE+      + S    +GQ
Sbjct: 575 EVLSNFDDAKIGFKTPATIEKFVYNGAIVNFFGNLKAFLPKSEISETFVEKASDYLRLGQ 634

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV-------V 553
            V  RI+S     +R+ ++ + +   +SE     L  +  G    +TP  VV       +
Sbjct: 635 TVNVRILSVNKEQKRLVVT-LKQSVDLSESQKSSLDDIHPG--KTITPATVVEKQKESVI 691

Query: 554 YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYS 610
             ++    +G I + HL+D + E    + + +K   E  Q+LVL  D ++ +++ +AK S
Sbjct: 692 VELSGSKLRGVIYSGHLSDDNYEQNRAIFNKLKVNDEL-QVLVLEKDLKARSVICTAKKS 750

Query: 611 LINSAQQ--LPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 667
           LI +A    +P+    I   + ++ G+V ++   G F+ F G+LTG      A D    +
Sbjct: 751 LIEAASNGMIPAYFKDIKVDDRMLRGFVKSVTNMGLFISFAGKLTGLVLAKYATDRPNEN 810

Query: 668 LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           L+K +Y  +SV   ++ V+ E  R  LSLK+   SS
Sbjct: 811 LAKKFYKYKSVSCRVIRVDEENKRFLLSLKKDNNSS 846



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 178/408 (43%), Gaps = 56/408 (13%)

Query: 977  FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1036
            F+IG  V +R+++K  K          ++IK S++ + +   ++L    D  IG +    
Sbjct: 542  FRIGGKVKSRVLSKRGKNLF-------ITIKKSLVNIED--QEVLSNFDDAKIGFKTPAT 592

Query: 1037 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1096
            + K     A++    +LKA  F+  S    + +++      +G+ V   +LS+NKE+K L
Sbjct: 593  IEKFVYNGAIVNFFGNLKA--FLPKSEISETFVEKASDYLRLGQTVNVRILSVNKEQKRL 650

Query: 1097 RLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQI-GPHLYG 1153
             + L+        ++VD+S     +   IH G  +    + +      ++V++ G  L G
Sbjct: 651  VVTLK--------QSVDLSESQKSSLDDIHPGKTITPA-TVVEKQKESVIVELSGSKLRG 701

Query: 1154 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1213
             ++   L     SD     +   F+ L   DE Q +  +    +R+V  T    L + ++
Sbjct: 702  VIYSGHL-----SDDNYEQNRAIFNKLKVNDELQVLVLEKDLKARSVICTAKKSL-IEAA 755

Query: 1214 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1273
             +GM      D+  D                + +++G+VK+VT+ G FI  + KL   VL
Sbjct: 756  SNGMIPAYFKDIKVD----------------DRMLRGFVKSVTNMGLFISFAGKLTGLVL 799

Query: 1274 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINN--- 1328
                +D   E+  K+F   K V+ RV+ V+  +KR  ++LK   + S T +   + N   
Sbjct: 800  AKYATDRPNENLAKKFYKYKSVSCRVIRVDEENKRFLLSLKKDNNSSDTFNDEPLQNPVD 859

Query: 1329 -----LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1371
                 + +  VG +    IK +    L + + + NL G   V++   D
Sbjct: 860  KSKAVIGDYSVGVVTKAIIKSIRGTQLNVQLSD-NLQGRVDVTQCFND 906



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 1230 DTP-GKHLEKIEDLS--PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
            D P G  +EK E L   PN           S G  + +  + +A V   ++SD  +  PE
Sbjct: 491  DIPDGTFIEKCEVLKILPN-----------SGGLEVKVFDEFNAIVPPEHMSDIRLVYPE 539

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1346
            ++F IG  V  RVLS     K + +T+K S      Q  ++N  +  +G      I++  
Sbjct: 540  RKFRIGGKVKSRVLSKR--GKNLFITIKKSLVNIEDQEVLSNFDDAKIGFKTPATIEKFV 597

Query: 1347 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
              G  +     NL      SE+SE  V+      R G+ V V+IL V+KE++R+ + +K 
Sbjct: 598  YNGAIVNFFG-NLKAFLPKSEISETFVEKASDYLRLGQTVNVRILSVNKEQKRLVVTLKQ 656

Query: 1407 S 1407
            S
Sbjct: 657  S 657



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 5/191 (2%)

Query: 342  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 401
            +A  +    A + L+ +H D+K   VV+G V  + + G  V     V AL  +  +S+  
Sbjct: 1130 VAVSLRNQYASDKLITSHKDLKQEDVVRGFVKNIANNGVYVSLGRTVHALVRVSDLSDSY 1189

Query: 402  IVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
            +    K FK    ++ +V  +    +I +T K++ V  KL +L  + +     I  G I 
Sbjct: 1190 LKDWKKFFKPNQPVIGKVSAINEDGKILLTLKESEVYGKLNVLKKFNDLKVGDIFEGSIK 1249

Query: 461  KIEKHGCFVRFYN--GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 518
            ++   G FV+     GV G    SE+      + SS++  G  VK +++ +I  S++  L
Sbjct: 1250 QVTNFGVFVKLDGTVGVTGLCHHSEIADKTITDVSSLFGEGDRVKVKVL-AIDESKK-QL 1307

Query: 519  SFMMKPTRVSE 529
            S  MK +  ++
Sbjct: 1308 SLGMKASYFTD 1318


>gi|453087833|gb|EMF15874.1| nucleic acid-binding protein [Mycosphaerella populorum SO2202]
          Length = 1804

 Score =  347 bits (891), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 379/1459 (25%), Positives = 661/1459 (45%), Gaps = 190/1459 (13%)

Query: 407  KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH-----GWITK 461
            KK+KVG++   R++    +       +     +L  +SS  E  D  IT      G   K
Sbjct: 401  KKYKVGSKTHARIVFAIPEDDGARRTQAAELGQLLPMSSVVE--DAKITQVSQNKGLYLK 458

Query: 462  IE-KHGCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 517
            +  KHG   R    V  FA  S++    ++     S  Y +    K RI+   P      
Sbjct: 459  LSAKHG---RDERSVTAFAHISQISDKRIESLSSTSGPYTIDSAHKVRIIGYSPIDNIYY 515

Query: 518  LSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV----VYVIAKGYSKGTIPTEHL 570
            +S    ++    +  DDL  +G++V+G VD +          + V       G +P +H+
Sbjct: 516  VSLKQSVLDQAFLRLDDLT-VGAVVNGTVDKIILGGATGLTGILVKLSDNITGLVPEQHI 574

Query: 571  ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSA-QQLPSDASHIHPN 628
            +D        K   + G+    ++L +D E  ++ L+ K  L++ A +++      + P 
Sbjct: 575  SDAQLKNPERK--YREGFPVKARILSVDTEKRHVRLTLKKQLVDDANEEIWKAYQGLQPG 632

Query: 629  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
                G +  +   G  V+F G +  + P ++  +       + +  GQ+VR  I+ V+ +
Sbjct: 633  MESKGTIIKLHPNGAVVQFYGPVRAWLPVAEMSETFIERPEQHFRSGQTVRVKIVSVSPD 692

Query: 689  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
            T  + ++ K       D    QE     +K+A        G +L      + G+V E K 
Sbjct: 693  TEEMKVTCKDHVAFGAD----QEQAW--DKVA--------GGQL------VSGTVTE-KS 731

Query: 749  HESNDFGVVVSFEEHSDVYGF--ITHH---QLAGATVESGSVIQAA------ILDVAKAE 797
             ES      +S +  S + G   +TH     LA A  E+  V          +LD     
Sbjct: 732  AES------ISLDLESGLRGMMRLTHFVDGSLAKAEKEAKRVRVGQKLKHLLVLDKIDRS 785

Query: 798  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG-VHQTVNAIVEIVKENYLVLSL 856
            + V LS K   ++  +  N        K   + +K  G V  T +  + +   N +V  L
Sbjct: 786  QTVMLSNKPSLVEDAKAGNLISTFSDVK---QGTKVHGFVRNTTSDAIFVEFANGIVGLL 842

Query: 857  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ET 915
            P+           D+  +K    Q LN       V  + +  +A R  L ++  + T E 
Sbjct: 843  PKSQILAEALDKPDFGVRK---DQTLN-------VWVMDTDVSAKRFRLTMREQAATAEQ 892

Query: 916  SSSKRA--------------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 961
            SS+ +A              K  S  + G + +A I  I+  ++ ++      GR+ ++E
Sbjct: 893  SSNPKASIDDALSKPIDPALKSLSDIEPGKVTKARIASIRATQINVRLADNVQGRVDVSE 952

Query: 962  VNDDKSNVVENL--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSM 1010
            V D    +        +FK    +  +++   +  + +         K  ++ELS K S 
Sbjct: 953  VFDSWDEISNKAAPLQSFKQNDLIDVKVLGIHDARNHRFLPFSHRQGKVPVFELSAKKSR 1012

Query: 1011 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1070
            +   +   K L +   V  G     +V         + +S +++ ++ ++D + +  +LQ
Sbjct: 1013 VQKDD---KSLLDLESVKPGSSQLAFVNNHAENCVWVNLSPNVRGRVALMDLSDDVGQLQ 1069

Query: 1071 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG 1130
              + RF IG A+  +V +++     L L  +               DN  T +   D+  
Sbjct: 1070 NVENRFRIGCALRVNVKAVDISAGRLDLTAK--------------QDNASTPLALKDLSP 1115

Query: 1131 GRI--SKILSGVGGLV-VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            G +  ++++      V V++  +L   V   EL +         YD      L  Y +  
Sbjct: 1116 GMVLPARVIKATERAVSVELAKNLVAHVPLVELSD--------DYDSIN---LMQYSKND 1164

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             V+  V+ +    +  F   +SLR S           LS+ +      +  +  L    I
Sbjct: 1165 IVRACVISVDAPNKRAF---VSLRPS---------KVLSSSLPVKDAQISNVSQLKAADI 1212

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V+G+VK V  KG F+ L   +DA V +S+LSD YV+     + + +LV GRVLSV+  +K
Sbjct: 1213 VRGFVKKVADKGVFVSLGADVDALVRISDLSDQYVKEWRSIYVVDQLVKGRVLSVDTDAK 1272

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN--LVGLCHV 1365
            +V+++LK S      +  +  +++L  G  V G++++VE +G FI I+NT   L GLCH 
Sbjct: 1273 QVQLSLKQSHVDGNYEPPLG-ITDLEAGMTVTGKVRKVEDFGAFIDIDNTQPRLSGLCHR 1331

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1425
            SE++    +++  +Y AG+ VK K+LKVD E R+ISLG+K+SYF N+ D+     E+  D
Sbjct: 1332 SEVAARRTEDVRKLYSAGDVVKAKVLKVDVENRKISLGLKASYFANETDDGDDEDEDSED 1391

Query: 1426 EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM 1485
            E ++  G       L N S    ++D + +D  S    +        P + +        
Sbjct: 1392 EDVDMDGGVE----LSNDSDGGVEIDRDVQDADSEADVEDMMDVDDEPAKAS-------- 1439

Query: 1486 DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEERE-------QEIRAAEERLLEKDAPRTP 1538
              G  +  G   E + +D   N  A + E E           EI+      L+K+ P++ 
Sbjct: 1440 --GGLKTSGFNWEGEDLDAGTNGAAYESEPETVTTKKKKRKSEIKEDLTGDLDKNGPQSN 1497

Query: 1539 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1598
             +FER +   PN+S +WI+YMAF L ++++++AR+IAERAL+TINIRE +EKLNIW+A  
Sbjct: 1498 SDFERQLLGQPNNSGLWIQYMAFQLRLSEIQQARNIAERALRTINIRESDEKLNIWIALL 1557

Query: 1599 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI--KKF 1656
            NLE EYG+  ++ V + F+ A+Q  DP ++H  L  +Y  + ++  AD +  +MI  K F
Sbjct: 1558 NLEVEYGD--DDGVEEAFKNAVQVQDPLEMHEKLASIYIDSGRHAKADGIFERMIANKTF 1615

Query: 1657 KHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVAD 1712
            + S +VWL     LL+     +  +A++ +AL S+P ++H    ++ A LEF+  NG A+
Sbjct: 1616 RASPEVWLNYATFLLETLGNADRARALLTKALHSVPTNEHRLLTAKFAALEFRSVNGDAE 1675

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQE-----------IRLGDVDLIRGLFERAISLSLP 1761
            RGR++FEG++SE+ K +  W +++D E            ++  V+  R LFER + L + 
Sbjct: 1676 RGRTIFEGLMSEWSKWSSGWDMWVDIERSRISTQSSDDAKMEAVEKTRELFERIVKLPMK 1735

Query: 1762 PKKMKFLFKKYLEYEKSVG 1780
             ++ KF+FKK+L++E   G
Sbjct: 1736 KRRAKFVFKKWLDFENKEG 1754



 Score =  174 bits (440), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 298/1288 (23%), Positives = 542/1288 (42%), Gaps = 144/1288 (11%)

Query: 5    GVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDN-------EIEANEDNLLP 50
            G V  +  +D+ + LP  L G         R    ++ +LD+       + E +ED  L 
Sbjct: 151  GRVTAITGRDVALALPNNLTGYVPITAVSERLTARIERMLDDAKSGADEDDEDDEDIDLK 210

Query: 51   TIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
             +FHVGQ +   V     D  E   K+ I LSL  + +  GL  + V    V+ A V+S+
Sbjct: 211  QLFHVGQWLRATVTSTGTDPAEGKSKKHIELSLDPTTVNGGLPEDNVVVNSVVQAAVRSV 270

Query: 110  EDHGYILHFGLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDP 166
            EDHG I+  GL   S  GF+ +  L     +D V+ G ++  +V       KV+ +S DP
Sbjct: 271  EDHGLIMDLGLSDESVKGFVSKKELGYAYDLDKVQEGQVMLCLVTGKGSNGKVLKISPDP 330

Query: 167  DTVSKCV-TKDLKGI----SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
              +S  +  K L  I    S+D ++PG  V   +     +GV+   +     T D  H Q
Sbjct: 331  SRMSLALGDKKLPTISDAPSVDAILPGTAVDVLITESGPSGVVGKIMGMLDVTADAIHSQ 390

Query: 222  NT-FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 280
                   +    Y    K +ARI+F  P       T     L    P S V      + +
Sbjct: 391  AIGLEEKDMSKKYKVGSKTHARIVFAIPEDDGARRT-QAAELGQLLPMSSV-----VEDA 444

Query: 281  KVVRVDRGLGLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRI 333
            K+ +V +  GL L + +       S  A+  IS ++++ +  L      Y   S  +VRI
Sbjct: 445  KITQVSQNKGLYLKLSAKHGRDERSVTAFAHISQISDKRIESLSSTSGPYTIDSAHKVRI 504

Query: 334  LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG---KVI---AVDSFGAIVQFPGG 387
            +G+  ++ +    LK S  +       D+  G VV G   K+I   A    G +V+    
Sbjct: 505  IGYSPIDNIYYVSLKQSVLDQAFLRLDDLTVGAVVNGTVDKIILGGATGLTGILVKLSDN 564

Query: 388  VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV-KSKLAILS 444
            +  L P  H+S+ ++  P +K++ G  +  R+L V +++  + +T KK LV  +   I  
Sbjct: 565  ITGLVPEQHISDAQLKNPERKYREGFPVKARILSVDTEKRHVRLTLKKQLVDDANEEIWK 624

Query: 445  SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 504
            +Y      + + G I K+  +G  V+FY  V+ + P +E+       P   +  GQ V+ 
Sbjct: 625  AYQGLQPGMESKGTIIKLHPNGAVVQFYGPVRAWLPVAEMSETFIERPEQHFRSGQTVRV 684

Query: 505  RIMSSIPASRRINLS----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 560
            +I+S  P +  + ++          +    D V  G LVSG   V   +A  + +  +  
Sbjct: 685  KIVSVSPDTEEMKVTCKDHVAFGADQEQAWDKVAGGQLVSGT--VTEKSAESISLDLESG 742

Query: 561  SKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQ- 616
             +G +   H  D  L  A      ++ G +   LLVLD  + S  ++LS K SL+  A+ 
Sbjct: 743  LRGMMRLTHFVDGSLAKAEKEAKRVRVGQKLKHLLVLDKIDRSQTVMLSNKPSLVEDAKA 802

Query: 617  -QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK----AVD----GQRAD 667
              L S  S +   + VHG+V N      FV F   + G  P+S+    A+D    G R D
Sbjct: 803  GNLISTFSDVKQGTKVHGFVRNTTSDAIFVEFANGIVGLLPKSQILAEALDKPDFGVRKD 862

Query: 668  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 727
                    Q++   ++D +    R  L++++   ++  +S  +    +++ +     SK 
Sbjct: 863  --------QTLNVWVMDTDVSAKRFRLTMREQAATAEQSSNPKAS--IDDAL-----SKP 907

Query: 728  NGSELKWVEGFIIGSVIEGKVHE----------SNDFGVVVSFEEHSDVYGFITHHQLAG 777
                LK +     G V + ++            +++    V   E  D +  I++     
Sbjct: 908  IDPALKSLSDIEPGKVTKARIASIRATQINVRLADNVQGRVDVSEVFDSWDEISNKAAPL 967

Query: 778  ATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 835
             + +   +I   +L +  A+  R +  S +   +  F  +    + QK  +     + + 
Sbjct: 968  QSFKQNDLIDVKVLGIHDARNHRFLPFSHRQGKVPVFELSAKKSRVQKDDKSLLDLESVK 1027

Query: 836  VHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMA 893
               +  A V    EN + ++L P     +    +SD   Q +  + +F  G ++   V A
Sbjct: 1028 PGSSQLAFVNNHAENCVWVNLSPNVRGRVALMDLSDDVGQLQNVENRFRIGCALRVNVKA 1087

Query: 894  LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 953
            +  S  AGRL L  K     + +S+  A K  S   G ++ A + +     + ++     
Sbjct: 1088 VDIS--AGRLDLTAK----QDNASTPLALKDLSP--GMVLPARVIKATERAVSVELAKNL 1139

Query: 954  HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1013
               + + E++DD  ++  NL   +     V A +I+  + P+ K++F   +S++PS +  
Sbjct: 1140 VAHVPLVELSDDYDSI--NLM-QYSKNDIVRACVIS-VDAPN-KRAF---VSLRPSKV-- 1189

Query: 1014 SEIGSKLLFEECDVS------IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
              + S L  ++  +S          V G+V KV ++   +++   + A + I D + +  
Sbjct: 1190 --LSSSLPVKDAQISNVSQLKAADIVRGFVKKVADKGVFVSLGADVDALVRISDLSDQ-- 1245

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEG 1126
             ++E++  + + + V G VLS++ + K ++L L+    DG  +  + I++      +  G
Sbjct: 1246 YVKEWRSIYVVDQLVKGRVLSVDTDAKQVQLSLKQSHVDGNYEPPLGITD------LEAG 1299

Query: 1127 DIVGGRISKILS-GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
              V G++ K+   G    +    P L G  H +E+                 D    Y  
Sbjct: 1300 MTVTGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAARRTE-----------DVRKLYSA 1348

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSS 1213
            G  VK KVL++    R    + L L++S
Sbjct: 1349 GDVVKAKVLKVDVENR---KISLGLKAS 1373


>gi|367050128|ref|XP_003655443.1| hypothetical protein THITE_2119136 [Thielavia terrestris NRRL 8126]
 gi|347002707|gb|AEO69107.1| hypothetical protein THITE_2119136 [Thielavia terrestris NRRL 8126]
          Length = 1818

 Score =  346 bits (888), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 339/1322 (25%), Positives = 617/1322 (46%), Gaps = 177/1322 (13%)

Query: 552  VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNES-SNLLLSAKY 609
            ++  IA G S G +P  HLAD HL+H    +   + G +    ++  N +   + L+ K 
Sbjct: 562  LIVRIADGIS-GLVPEAHLADVHLQHP---EKKFREGMKVKARVLSTNPAMHQIRLTLKK 617

Query: 610  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 669
            +L+NS          +       G + ++++ G  V+F G+L GF P S+  +    D  
Sbjct: 618  TLVNSEAPPIKSYDELAVGLQAPGTIVSVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPK 677

Query: 670  KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 729
            + + VGQ+V   +L  + +  R+ +S K               F LE+++A+        
Sbjct: 678  EHFRVGQTVSIYVLSFDPDASRLIVSCKDPSA-----------FGLEKQLAL-------- 718

Query: 730  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA- 788
                  +   +G ++  KV +  +  + V   + S        H    +  ++ S ++  
Sbjct: 719  ------KKLQVGQLVSAKVTQKTEDDIFVELADSSLKAILPVGHLTDKSVSKTQSALKKI 772

Query: 789  ---------AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 839
                      +L+  +  R + LS K   +          QA K+ +      D  +   
Sbjct: 773  HVNQTLSELVVLEKNEGRRSITLSHKPSLV----------QASKEGKLLAHIDDARLGDQ 822

Query: 840  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 899
            V   V  +      +       ++   S+   + +  P       QS++  + ++     
Sbjct: 823  VPGFVRNITATAAFVQFAGKLTALLPKSMMPSDVRDKPSFGMHKSQSLVVKITSI--DKD 880

Query: 900  AGRLLLLL-KAISETETSSSKRAKKK-SSYD----------VGSLVQAEITEIKPLELRL 947
             GRL++ +  A  E   +S K A+K  +S D          VG L +A +  +K  +L +
Sbjct: 881  LGRLVVAIPSAAGEAAKTSQKNAEKAVNSVDDSIGSIDDLAVGKLTKARVKSVKETQLNV 940

Query: 948  KFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKS 999
            +      GRI ++++ D   ++ +       FK G  +  R++    A++++  P   +S
Sbjct: 941  QIADNIQGRIDVSQIFDKWEDIPDPKRPLKRFKAGDILPVRVLGVHDARNHRFLPISHRS 1000

Query: 1000 F--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1057
               + ELS KPS L    +   L  E+ +         +V  V +    + +S +++ ++
Sbjct: 1001 SHSVLELSTKPSDLKGDAMPEPLTLEKIEPQSTH--LAFVNNVTSSHLWVNLSPNVRGRI 1058

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
               +++ + S++   ++ F +G A+   VL+++ +K+ + L  R      +    ++S D
Sbjct: 1059 KATEASDDLSKVASLEKSFPVGCALQVRVLAVDADKERVDLSAR------TGAAPELSWD 1112

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             +Q    +G ++ G+++K+      + VQ+   + G VH  +L +         YDE   
Sbjct: 1113 KVQ----QGMVLPGKVTKV--NDRQVFVQLSELVAGPVHLVDLAD--------DYDEA-- 1156

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
            +PL+ + + + V+  ++EI ++ +    + LS+R S           L++ +    K + 
Sbjct: 1157 NPLA-HSKNEIVRVAIVEIDKSNK---KLRLSMRPS---------RVLNSSLPVKDKEIT 1203

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            K   L    +V+G+V+NV+ KG F+ L     A V + +LSD Y++  ++ F + +LV G
Sbjct: 1204 KGTKLEVGDVVRGFVRNVSDKGLFVSLGGDAVALVQIKDLSDSYLKDWKEHFQVDQLVKG 1263

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            R++SV     R+ ++LK S        ++  +S+L  G IV G++++VE +G FI I+ +
Sbjct: 1264 RIVSVA--DGRLRMSLKESVVEK-DFVKLTTISDLKEGQIVTGRVRKVEEFGAFIAIDRS 1320

Query: 1358 -NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
             NL GLCH SE+++  V + +T+Y  G++VK ++LKVD E++RISLG+K SYFK+   + 
Sbjct: 1321 DNLSGLCHRSEMADRAVKDAKTLYNEGDRVKARVLKVDLEQKRISLGLKPSYFKDGEADD 1380

Query: 1417 QMSS--------------EEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE-DGGS-- 1459
                              EE  DE + + G     +LL   S A +D + ESE DGGS  
Sbjct: 1381 VDVDTDDDEDGGAALDGREESEDEKMSDAGG----ALLIAGSDA-EDSEDESEVDGGSDV 1435

Query: 1460 -LVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEER 1518
             +  A  E  A+       LD    D            +        +     KK K+ R
Sbjct: 1436 EMAEAPAEGLAA-------LDAGGFDWTADALDADDKANADIADGPPS-----KKAKKRR 1483

Query: 1519 EQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1578
            E +    +   L+ + P+T  ++ERL+   P+SS +WI YMA  + + D+  AR +AERA
Sbjct: 1484 EPQGIVDKTAELDINGPQTSSDYERLLLGQPDSSELWIAYMASQMQVNDLASARQVAERA 1543

Query: 1579 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1638
            ++TINI+EE EKLN+W+AY NLE  YG    E V +VF+RA  Y D ++VH  L  +Y +
Sbjct: 1544 IKTINIKEETEKLNVWIAYLNLEVAYGT--AETVDEVFKRACTYNDDQEVHERLASIYIQ 1601

Query: 1639 TEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLP----- 1690
            + ++K ADEL  +++KK+   S  VW      L     Q +  +A+++RA   L      
Sbjct: 1602 SGKHKEADELFERILKKYGSRSPHVWTNYAHFLHVTAGQPDRARALLKRATQVLSSSTTV 1661

Query: 1691 --RHKHIKFISQTAILEFKNGVADR--GRSMFEGILSEYPKRTDLWSIYLDQEI------ 1740
                 ++  + + A LEF++   DR  GR++FE +L+ YP++ DLW+  LD E       
Sbjct: 1662 AGNQVYLSLLPKFAALEFRSPHGDREQGRTLFESLLAAYPRKFDLWNQLLDLETSPSSLS 1721

Query: 1741 -----RLGDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794
                       ++R LFER   +  L P++ K  F+++ ++E+  G+ +  E V  KA+E
Sbjct: 1722 SSPAAAADQAVVVRDLFERGSKVKGLKPRQAKAWFRRWAKWEEEHGDAKSRERVSAKAVE 1781

Query: 1795 YV 1796
            + 
Sbjct: 1782 WA 1783



 Score =  221 bits (563), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 217/756 (28%), Positives = 346/756 (45%), Gaps = 59/756 (7%)

Query: 5   GVVAEVNEKDLVICLPGGL--------------RGLARAADALDPILDNEIEANEDNLLP 50
           G V  +N  D+ + LP  L              R L  +A+  D   ++E E  +D  L 
Sbjct: 150 GTVCAINPLDIALALPNNLVGHVPITAISETLTRRLQASAEKEDDAGESEDENADDVDLK 209

Query: 51  TIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
           ++FH+GQ V   V   LD+      +R I LSL  S    G+S + + E   L A V S+
Sbjct: 210 SLFHMGQYVRAYVASTLDESTPGKSRRHIELSLEPSHANTGISEQDLVEHCTLMASVVSV 269

Query: 110 EDHGYILHFGLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDP 166
           EDHG+++  G+   S  GFLPR  L ++   D ++PG +L  VV       KVV LS+ P
Sbjct: 270 EDHGFVMDIGISESSVKGFLPRKQLDKSIPEDSIQPGSVLLCVVTGKAANGKVVQLSTLP 329

Query: 167 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 226
           D +        +  +I   +PG      +  + ++GV+   + +   T D+ H       
Sbjct: 330 DRLGNPKHTPSEATTIGSFLPGTAADVLISEVSQHGVIGKVMGHLDVTADLVHSGAGPDG 389

Query: 227 TNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVKVGD--------- 275
            +  + Y    +V ARI+   PT++   +G++L P++L  R P + ++ G          
Sbjct: 390 VDIVDKYKVGSRVKARIICTFPTAKMPKLGISLLPHVLSLR-PKTTIQDGQEALPTQILA 448

Query: 276 ---IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCV 329
              I DQ  V RV+ G+GL +D+    V  P +V IS V + +V  L      YK GS  
Sbjct: 449 HSAIVDQCTVQRVEPGIGLYVDVGVQGV--PGFVHISRVKDGKVDSLFENSGPYKIGSVH 506

Query: 330 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK----VIAVDSFGA-IVQF 384
             R++G+   +G+    L+    E       DV  G VV G     VI  D  G  IV+ 
Sbjct: 507 PGRVVGYNSFDGMFLLSLEKHVLEQPFLRIEDVPVGAVVPGVVEKLVINQDGLGGLIVRI 566

Query: 385 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAI 442
             G+  L P  H+++  +  P KKF+ G ++  RVL       +I +T KKTLV S+   
Sbjct: 567 ADGISGLVPEAHLADVHLQHPEKKFREGMKVKARVLSTNPAMHQIRLTLKKTLVNSEAPP 626

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
           + SY E    L   G I  + +HG  V+FY  ++GF P SE+      +P   + VGQ V
Sbjct: 627 IKSYDELAVGLQAPGTIVSVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEHFRVGQTV 686

Query: 503 KCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAK 558
              ++S  P + R+ +S         E  L    +++G LVS  V   T + + V  +A 
Sbjct: 687 SIYVLSFDPDASRLIVSCKDPSAFGLEKQLALKKLQVGQLVSAKVTQKTEDDIFVE-LAD 745

Query: 559 GYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAKYSLIN 613
              K  +P  HL D  +  +  +S +K         +L+VL+ NE   ++ LS K SL+ 
Sbjct: 746 SSLKAILPVGHLTD--KSVSKTQSALKKIHVNQTLSELVVLEKNEGRRSITLSHKPSLVQ 803

Query: 614 SAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 671
           ++++  L +          V G+V NI  T  FV+F G+LT   P+S      R   S  
Sbjct: 804 ASKEGKLLAHIDDARLGDQVPGFVRNITATAAFVQFAGKLTALLPKSMMPSDVRDKPSFG 863

Query: 672 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
            +  QS+   I  ++ + GR+ +++  +   +   S
Sbjct: 864 MHKSQSLVVKITSIDKDLGRLVVAIPSAAGEAAKTS 899



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 125/279 (44%), Gaps = 40/279 (14%)

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            G+GGL+V+I   + G V    L ++ +  P     E +F       EG  VK +VL    
Sbjct: 558  GLGGLIVRIADGISGLVPEAHLADVHLQHP-----EKKF------REGMKVKARVLS--- 603

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
            T      + L+L+ +L              V++    ++  ++L+  +   G + +V   
Sbjct: 604  TNPAMHQIRLTLKKTL--------------VNSEAPPIKSYDELAVGLQAPGTIVSVLQH 649

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G  +    +L   + +S +S+ Y+  P++ F +G+ V+  VLS +P + R+ V+ K  D 
Sbjct: 650  GAIVQFYGQLRGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVLSFDPDASRLIVSCK--DP 707

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                  +   L  L VG +V  ++ +     +F+ + +++L  +  V  L++  V   ++
Sbjct: 708  SAFGLEKQLALKKLQVGQLVSAKVTQKTEDDIFVELADSSLKAILPVGHLTDKSVSKTQS 767

Query: 1379 IYRAGEKVKVK-------ILKVDKEKRRISLGMKSSYFK 1410
              +   K+ V        +L+ ++ +R I+L  K S  +
Sbjct: 768  ALK---KIHVNQTLSELVVLEKNEGRRSITLSHKPSLVQ 803



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 164/805 (20%), Positives = 304/805 (37%), Gaps = 159/805 (19%)

Query: 53   FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLY---KGLSLETVQEGMVLTAYVKSI 109
            F VGQ VS  VL  D D       ++ +S +    +   K L+L+ +Q G +++A V   
Sbjct: 680  FRVGQTVSIYVLSFDPDAS-----RLIVSCKDPSAFGLEKQLALKKLQVGQLVSAKVTQK 734

Query: 110  EDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVY 161
             +    +     S    LP  +L + S    +  L        L + VV   +  R+ + 
Sbjct: 735  TEDDIFVELADSSLKAILPVGHLTDKSVSKTQSALKKIHVNQTLSELVVLEKNEGRRSIT 794

Query: 162  LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
            LS  P  V    +K+ K ++    +    +  +V   + N    +    F G +     +
Sbjct: 795  LSHKPSLVQ--ASKEGKLLA---HIDDARLGDQVPGFVRNITATAAFVQFAGKLTALLPK 849

Query: 222  NTFPT-TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 280
            +  P+    K  +  HK   ++ L V                                  
Sbjct: 850  SMMPSDVRDKPSFGMHK---SQSLVV---------------------------------- 872

Query: 281  KVVRVDRGLG-LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 339
            K+  +D+ LG L++ IPS   +  A  T    AE+ V  ++     GS           +
Sbjct: 873  KITSIDKDLGRLVVAIPSA--AGEAAKTSQKNAEKAVNSVDDSI--GS-----------I 917

Query: 340  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 399
            + LA G L  +  + +  T  +V+    ++G++     F      P              
Sbjct: 918  DDLAVGKLTKARVKSVKETQLNVQIADNIQGRIDVSQIFDKWEDIP-------------- 963

Query: 400  FEIVKPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLIT 455
             +  +P K+FK G  L  RVLGV   R    + ++H+ +    +L+   S  +  D +  
Sbjct: 964  -DPKRPLKRFKAGDILPVRVLGVHDARNHRFLPISHRSSHSVLELSTKPSDLKG-DAMPE 1021

Query: 456  HGWITKIEKHGCFVRFYNGVQG------FAP------RSELGLDPGCEPSSM---YHVGQ 500
               + KIE     + F N V         +P      ++    D   + +S+   + VG 
Sbjct: 1022 PLTLEKIEPQSTHLAFVNNVTSSHLWVNLSPNVRGRIKATEASDDLSKVASLEKSFPVGC 1081

Query: 501  VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 560
             ++ R+++      R++LS           D V+ G ++ G V  V  N   V+V     
Sbjct: 1082 ALQVRVLAVDADKERVDLSARTGAAPELSWDKVQQGMVLPGKVTKV--NDRQVFVQLSEL 1139

Query: 561  SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-LINSAQQ 617
              G +    LAD  + A  +        E  ++ +++ + SN  L LS + S ++NS+  
Sbjct: 1140 VAGPVHLVDLADDYDEANPLA---HSKNEIVRVAIVEIDKSNKKLRLSMRPSRVLNSS-- 1194

Query: 618  LP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 671
            LP      +  + +    VV G+V N+ + G FV   G            D    D  + 
Sbjct: 1195 LPVKDKEITKGTKLEVGDVVRGFVRNVSDKGLFVSLGGDAVALVQIKDLSDSYLKDWKEH 1254

Query: 672  YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 731
            + V Q V+  I+ V    GR+ +SLK+S         +++ F+    I+ L+        
Sbjct: 1255 FQVDQLVKGRIVSVAD--GRLRMSLKESV--------VEKDFVKLTTISDLKE------- 1297

Query: 732  LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GS 784
                     G ++ G+V +  +FG  ++ +   ++ G     ++A   V+        G 
Sbjct: 1298 ---------GQIVTGRVRKVEEFGAFIAIDRSDNLSGLCHRSEMADRAVKDAKTLYNEGD 1348

Query: 785  VIQAAILDVAKAERLVDLSLKTVFI 809
             ++A +L V   ++ + L LK  + 
Sbjct: 1349 RVKARVLKVDLEQKRISLGLKPSYF 1373



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 138/315 (43%), Gaps = 40/315 (12%)

Query: 143  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
            G  LQ  V ++D  ++ V LS+      +        +S D +  GM++  +V  + +  
Sbjct: 1080 GCALQVRVLAVDADKERVDLSARTGAAPE--------LSWDKVQQGMVLPGKVTKVNDRQ 1131

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            V +       G V +  L + +   N    +++++ V   I+ +D +++ + L++ P  +
Sbjct: 1132 VFVQLSELVAGPVHLVDLADDYDEAN-PLAHSKNEIVRVAIVEIDKSNKKLRLSMRPSRV 1190

Query: 263  HNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
             N + P         + ++VGD+      VR     GL + +    V   A V I D+++
Sbjct: 1191 LNSSLPVKDKEITKGTKLEVGDVV--RGFVRNVSDKGLFVSLGGDAV---ALVQIKDLSD 1245

Query: 314  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGM 366
              ++  ++ ++    V+ RI+       +A G L+ S  E +V        T SD+K G 
Sbjct: 1246 SYLKDWKEHFQVDQLVKGRIVS------VADGRLRMSLKESVVEKDFVKLTTISDLKEGQ 1299

Query: 367  VVKGKVIAVDSFGAIVQF--PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
            +V G+V  V+ FGA +       +  LC    M++  +      +  G  +  RVL V  
Sbjct: 1300 IVTGRVRKVEEFGAFIAIDRSDNLSGLCHRSEMADRAVKDAKTLYNEGDRVKARVLKVDL 1359

Query: 423  KSKRITVTHKKTLVK 437
            + KRI++  K +  K
Sbjct: 1360 EQKRISLGLKPSYFK 1374


>gi|320165905|gb|EFW42804.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2281

 Score =  346 bits (888), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 331/1221 (27%), Positives = 549/1221 (44%), Gaps = 182/1221 (14%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-----------LDNEIEANEDNLLPT 51
            L G + EV E DL++ LP  L G  R  D  + +            D+E   ++   L +
Sbjct: 213  LLGAIREVGEIDLLVSLPNALTGSVRITDITEELKTTVAQITAAATDDEDFTDKLPKLAS 272

Query: 52   IFHVGQLVSCIVL----QLDDDKKEIG-------KRKIWLSLRLSLLYKGLSLETVQEGM 100
            +F VG +V C V     ++D+D  E         KR++ L+L  S + + L+ ET+    
Sbjct: 273  MFSVGDVVQCAVSSVEGKVDEDAGESKPASDKPVKRRVHLTLLPSAINRQLTFETILPNQ 332

Query: 101  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDR 155
            ++ A VKS+EDHGY+L  GL     FLP+ N      A  SG  + PG  ++  V S  +
Sbjct: 333  IIPASVKSVEDHGYVLSIGLEGVHAFLPKGNSTAYLKARGSGA-LAPGSYVRCAVVSASK 391

Query: 156  TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 215
              KVV ++ DP  ++  V       S   L+P M V  RV S+  +GV +S+   F GT+
Sbjct: 392  MSKVVTVTVDPAVLTSAVVTATPSASS--LLPDMRVKARVTSVSNSGVRVSY-AGFAGTI 448

Query: 216  DIFHLQNTFPTTNWKNDYNQHKKVN----------ARILFVDPTSRAVGLTLNPYLL-HN 264
            D++HL +T P +  +      + +           ARILFV+ +++ +  T+ P LL H+
Sbjct: 449  DLYHLGDT-PASFAEGGAKTLEAIKELCPVGSELAARILFVNASAKTIAFTIRPGLLTHH 507

Query: 265  RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 324
              P + + +GDI D+++V+  D  LGL+L +P    +   +  IS+++++ +  L KK+ 
Sbjct: 508  VKPATDLHIGDIIDKTRVLTADPQLGLVLHLPVG--NHIGFAHISNLSDDRIGLLGKKFA 565

Query: 325  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 384
              S  R R++G+  ++GL    L+ S  +        +KPG +V G V+ V   G  VQ 
Sbjct: 566  SNSQHRARVIGYSLIDGLFLVSLQPSVLKLPFLRIEHIKPGSLVTGTVLDVVPAGVTVQL 625

Query: 385  PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAI 442
               ++   P  HMS+ ++ K  K    GA +  RVL V +  +R+ +THKK+LVK+ L I
Sbjct: 626  TDTIRGFIPGSHMSDVQLTKAPKHMSAGASVECRVLEVDTERRRVFLTHKKSLVKTSLPI 685

Query: 443  LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
            +++Y EA   L+T G+IT ++ +GC V F+  V  F P+SEL L    +P   +   QV+
Sbjct: 686  VAAYTEAQPGLVTQGFITSVKPNGCVVTFFGKVHAFVPKSELSLG-AADPEKFFKRNQVM 744

Query: 503  KCRI--MSSIPASRRINLSFMMK----PTRVSEDDL---VKLGSLVSGVVDVVTPNAVVV 553
            K RI  +      RR+  SF         RVS +     +++GS+VSG V      ++ V
Sbjct: 745  KVRILELDLTGERRRLIASFKWNEESASQRVSSEAFGKDLQVGSIVSGTVTSFDETSLTV 804

Query: 554  YVIAKGYSKG--TIPTEHLADHLEH-ATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKY 609
             V       G  TIP+  L DH+ H   +++   + G+  D+ LVL   +   + LS K 
Sbjct: 805  LVKDSHGETGSITIPSSQLTDHVCHEKQLLRVYAEKGFVLDRCLVLAKPAPGRIELSLKP 864

Query: 610  SLINSAQQ---LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 666
            SL+ +A     LP+  S +   +V+ G+V +I   G FV FL  LTG    ++       
Sbjct: 865  SLLEAAASTKVLPA-VSTLATGAVLPGFVKSIQPYGVFVGFLNGLTGLTHLTRLAGHFVT 923

Query: 667  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI---AMLQ 723
              ++ + VGQSV++ +++V+ E  ++TLSL  S  +S+ +S     F  E+      +  
Sbjct: 924  APAEEFAVGQSVKAAVVEVDREDSKLTLSLNDSAVTSSSSSAFVSTFFAEQDTIIRRLCA 983

Query: 724  SSKHNGSEL------KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 777
            ++K + S L      K +        +EG V +    G ++   E   V G+++   LAG
Sbjct: 984  TAKPHESALAIPAARKRLSEIATSITVEGTVTQVKATGAMLDLGE--GVNGWVSKEHLAG 1041

Query: 778  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ--------------- 822
            +       +  A+LDV     LVDLSLK  F+          QA                
Sbjct: 1042 SKPAVNGKLTCAVLDVDPIANLVDLSLKPEFVSASANPFEPLQAHFAAPAPSGTSTPKSK 1101

Query: 823  --KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 880
                     A+   GV  T++AIVE+VK  YL+LS      S  +AS  D+NT       
Sbjct: 1102 KGAASAAAAATPASGV--TIDAIVELVKPEYLILSSAAAPGSHFFASCKDFNTAVRGAPH 1159

Query: 881  FLNGQSVIATVMALPSSSTAG----------------------------RLLLLLKAISE 912
            +  G +V   +  LP++ +A                             R L +++  S 
Sbjct: 1160 YNVGNAVKVLLTRLPAAVSAPAATNKGKGKAAAPAASDSVDVLANLSSRRALAVVQGRSA 1219

Query: 913  TETSSSKRAKK--------------------KSSYDV--GSLVQAEITEIKPLELRLKFG 950
               + +                         KS  DV  G +VQ  +     + + +  G
Sbjct: 1220 APAAEATNGHASAAAAATSKRASRPTMDNGFKSVDDVKLGQMVQGAVISTSAMHVNVDLG 1279

Query: 951  IGFHGRIHITEVND--------------------DKSNVV----ENLFSNFKIGQTVTAR 986
               H R+ ITE+ D                    D+ NV      N  ++F+ G   +AR
Sbjct: 1280 NKVHARLFITEILDHSHVEQPANKRSTPSHTAAADEVNVATIDRNNPLASFQPGMRFSAR 1339

Query: 987  IIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1036
            ++   +K                 L EL ++P++L    +    L     ++ GQ + GY
Sbjct: 1340 VVGFLDKHSHTYLPISHTVGGTRKLVELCMRPALLAAQSVE---LITIKSLTQGQLLDGY 1396

Query: 1037 VYKVDNEWALLTISRHLKAQL 1057
            V +V ++   ++++  +K ++
Sbjct: 1397 VDEVRSDKVEVSVTPFIKVRV 1417



 Score =  291 bits (744), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/298 (48%), Positives = 211/298 (70%), Gaps = 10/298 (3%)

Query: 1508 RHAKKKEKEEREQEIRAAEERLLEKD--APRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1565
            R  +K  K+  E EI  AE+ LL +D  AP T ++FERLV +SPNSS+ WIK+MAF LS+
Sbjct: 1990 RRQRKAAKKREEAEIAQAEQALLTRDGAAPETVEDFERLVLASPNSSYAWIKFMAFHLSL 2049

Query: 1566 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1625
            ++V++AR + ++AL+TI+ REE E+LN+WVA  NLEN++G   ++AV + F RA+  CDP
Sbjct: 2050 SEVDRARQVGDQALKTISYREERERLNVWVALLNLENKFGG--KDAVQQTFDRAVANCDP 2107

Query: 1626 KKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRR-VQRLLKQQQEGVQAVVQ 1683
            K VHL L+G+YE+T   K A E LYK    KFK S KVW++  + +L     EG +A++Q
Sbjct: 2108 KAVHLQLVGIYEQTPGKKEAAEQLYKTTCTKFKDSKKVWIQYGLFKLRNGDVEGARAILQ 2167

Query: 1684 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1743
            R+L SLP+ KHI  IS+ A +EFK+G  +RGR++FE IL+ YPKR DLWS+YLD EIR G
Sbjct: 2168 RSLKSLPKRKHIATISKFAQMEFKHGEPERGRTIFENILATYPKRLDLWSVYLDMEIRNG 2227

Query: 1744 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            DV+    +FE+  ++++  KKMK+  K++L++EK  G ++  ++VK KA  Y++S +A
Sbjct: 2228 DVN----VFEKVTNMNMSSKKMKYFLKRWLDFEKIHGNKQSADHVKLKAKSYLQSKMA 2281



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 108/194 (55%), Gaps = 9/194 (4%)

Query: 1236 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1295
            +  +ED+    I++G+V++   KGCF+ L   +  +VL+SNLSD ++      +  G+LV
Sbjct: 1628 IRSVEDVRVGQILRGFVRHTDEKGCFVNLGVNVVGRVLISNLSDRFLLKWRTAYSTGQLV 1687

Query: 1296 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
              +VL+V+   K++E++ +             +L  +  G     ++  VE YG+F+ IE
Sbjct: 1688 TAKVLAVDLAKKQIELSFRKEHIDPEHFVRAVSLKEIEEGQKYNAKVTGVERYGVFVKIE 1747

Query: 1356 NTNLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKE---KRRISLGMKSSYFKN 1411
            N+++ GL H SE+++    +N  +++  G+ V+V I ++ +E   K +I+  MK S+F +
Sbjct: 1748 NSDIAGLVHASEIADHQAPENFGSLFEVGDSVRVLIKQIVREKGKKAKINFSMKPSHFAD 1807

Query: 1412 DADNLQMSSEEESD 1425
                 +M +E ++D
Sbjct: 1808 -----EMEAEADAD 1816



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 195/473 (41%), Gaps = 62/473 (13%)

Query: 943  LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1001
            L L L   +G H G  HI+ ++DD+  +   L   F       AR+I  S         L
Sbjct: 532  LGLVLHLPVGNHIGFAHISNLSDDRIGL---LGKKFASNSQHRARVIGYS-----LIDGL 583

Query: 1002 WELSIKPSMLTVSEIGSKLLFEECD-VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1060
            + +S++PS+L       KL F   + +  G  VTG V  V      + ++  ++   FI 
Sbjct: 584  FLVSLQPSVL-------KLPFLRIEHIKPGSLVTGTVLDVVPAGVTVQLTDTIRG--FIP 634

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
             S     +L +  +    G +V   VL ++ E++ + L  +      S   V    +   
Sbjct: 635  GSHMSDVQLTKAPKHMSAGASVECRVLEVDTERRRVFLTHKKSLVKTSLPIVAAYTEAQP 694

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH-FTELKNICVSDPLSGYDEGQFDP 1179
              + +G I   + +       G VV      +G+VH F          P S    G  DP
Sbjct: 695  GLVTQGFITSVKPN-------GCVVT----FFGKVHAFV---------PKSELSLGAADP 734

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
               +   Q +K ++LE+  T          L +S      + S  +S++    GK     
Sbjct: 735  EKFFKRNQVMKVRILELDLTGE-----RRRLIASFKWNEESASQRVSSEAF--GK----- 782

Query: 1240 EDLSPNMIVQGYVKNV--TSKGCFIMLSRKLDAKVLL--SNLSDGYVESPE--KEFPIGK 1293
             DL    IV G V +   TS    +  S      + +  S L+D      +  + +    
Sbjct: 783  -DLQVGSIVSGTVTSFDETSLTVLVKDSHGETGSITIPSSQLTDHVCHEKQLLRVYAEKG 841

Query: 1294 LVAGRVLSV-EPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLF 1351
             V  R L + +P   R+E++LK S    A+ +++   +S L  G ++ G +K ++ YG+F
Sbjct: 842  FVLDRCLVLAKPAPGRIELSLKPSLLEAAASTKVLPAVSTLATGAVLPGFVKSIQPYGVF 901

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404
            +   N  L GL H++ L+   V      +  G+ VK  +++VD+E  +++L +
Sbjct: 902  VGFLN-GLTGLTHLTRLAGHFVTAPAEEFAVGQSVKAAVVEVDREDSKLTLSL 953



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 16/190 (8%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            +IE + P  +V G V +V   G  + L+  +   +  S++SD  +    K    G  V  
Sbjct: 599  RIEHIKPGSLVTGTVLDVVPAGVTVQLTDTIRGFIPGSHMSDVQLTKAPKHMSAGASVEC 658

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            RVL V+   +RV +T K S  +T S   +   +    G +  G I  V+  G  +T    
Sbjct: 659  RVLEVDTERRRVFLTHKKSLVKT-SLPIVAAYTEAQPGLVTQGFITSVKPNGCVVT---- 713

Query: 1358 NLVGLCHV----SELSEDHVDNIETIYRAGEKVKVKILKVD--KEKRRISLGMKSSYFKN 1411
               G  H     SELS    D  E  ++  + +KV+IL++D   E+RR+    K   +  
Sbjct: 714  -FFGKVHAFVPKSELSLGAADP-EKFFKRNQVMKVRILELDLTGERRRLIASFK---WNE 768

Query: 1412 DADNLQMSSE 1421
            ++ + ++SSE
Sbjct: 769  ESASQRVSSE 778


>gi|191256845|ref|NP_001122095.1| programmed cell death 11 [Xenopus laevis]
 gi|189441690|gb|AAI67486.1| LOC779090 protein [Xenopus laevis]
          Length = 1812

 Score =  346 bits (888), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 354/1386 (25%), Positives = 635/1386 (45%), Gaps = 151/1386 (10%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLP--TIF 53
            M   G V    + +L + LP  L G  +A    DA   ++  ++E ++  + L+P   ++
Sbjct: 80   MLFLGCVKRTKDFELTVSLPYCLTGYIQATNICDAYTNLISEQVEKDDPLEALVPLSELY 139

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C +  L+      G   + LS+    + K L+  +++ GMVL+  V S+EDHG
Sbjct: 140  SPGMLVRCAISSLETTAS--GFPSVKLSVNPKHVNKALNTGSIKTGMVLSGCVSSVEDHG 197

Query: 114  YILHFGLPSFTGFLPRNNLA-----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLPR            G  ++ G  L  VV  +    K+V LS   + 
Sbjct: 198  YLVDIGVAGTKAFLPRQKAQLFLSQAGQGSLLRVGEYLNCVVEEVKNEGKIVRLSIIQND 257

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            V+  +    +  +++ L+PG++   +++ ++ N + LSFL+ +TG VD  H +       
Sbjct: 258  VASALATVEQNWNLNNLLPGLVFKAQIEKVMHNNITLSFLSSYTGFVDFLHFE-----PK 312

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAPP-SHVKVGDIYDQSKVVRV 285
                Y + ++V A IL++DP+++ + LTL    L   N  P  +   VG + D   V  +
Sbjct: 313  KIGSYKEGQEVKACILWLDPSTKTIRLTLRQCFLQPGNTLPQLTSDWVGSVLDNCVVQTL 372

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G + ++    +       +S   +       +K+K+G+  + RI  F  ++ +   
Sbjct: 373  FKNAGAVFELEGGNLGFAFKHHLSASKQPHF----EKFKKGTTHKGRITDFSPMDEMHIL 428

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             LK      L   H D++PG V++G V  +++ G +VQ    +  L P  H ++  +  P
Sbjct: 429  SLKEKVITNLFLRHEDIQPGQVLEGTVKCMEAVGMVVQITDHLTGLVPKLHFADVLLKHP 488

Query: 406  GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G ++  +VL V +  +++ +T K+TL+KS L +L+SY +A   LITHG+I  I+
Sbjct: 489  EKKYIIGNKIKCKVLTVVTCERKLILTRKRTLMKSTLPVLASYEDAQPGLITHGFIVAIK 548

Query: 464  KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
             +GC V+FYN VQG APR ELG L         ++ GQV+K +++   P ++++ LSF +
Sbjct: 549  DYGCLVKFYNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVQVLECNPQTQQLLLSFRI 608

Query: 523  KPTRVSEDD--------LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 572
                 +E +         VKL  G LV   V   T   V V V+ +  S   IP  HL+D
Sbjct: 609  TEEGHTEQEQRFLKKIKAVKLDVGKLVDIRVLSKTDKGVNVLVLPE-ESPAFIPKMHLSD 667

Query: 573  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSV 630
            H+ +  ++   ++ G +    + L +   + +L+ K  LI+S ++       S +     
Sbjct: 668  HVSNCELLWHTLQEGDDIPGAMCLSSLKGHSILTKKSLLISSVEKGSCVKVISEVQTGMH 727

Query: 631  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
            + G+V +I+  G FV F   L G  P S+  D    ++   +  G +V + ++ ++ E  
Sbjct: 728  LTGFVKSIMPYGVFVEFPYGLFGLVPMSEISDKFVTNIRDHFVEGNTVVATVIKMDEEKK 787

Query: 691  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ------SSKHNGSELKWVEGFIIGSVI 744
            R  L+LK S C+  D S ++  FLL +  + LQ      + K +  +   +   I G  +
Sbjct: 788  RFLLTLKMSECAPDDYS-IEGLFLLSQCFSELQLMKGLLARKGDPEDELSIYTLIAGQKL 846

Query: 745  EGKVHESNDFGVVVSFEEHSDVYGF----ITHHQLAGATVESGSVIQAAILDVAKAERLV 800
               V  + + G  V F   S + G      T + +    + +G  ++A +L V      V
Sbjct: 847  TLVVENAEENG-PVQFSAGS-ISGAQTVSATQYHIGDKALVAGQKVKAVVLHVDMLTLHV 904

Query: 801  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 860
             +SL    +               K+K+   K    H   +A V+ V E + V+SL +  
Sbjct: 905  HVSLNQTLL---------------KKKQNVPKMNSSH---SADVQHVAEEFAVVSLADSA 946

Query: 861  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL-KAISETE---- 914
            H I     S  N T +F  ++   G++ I+ ++   + +  G LL +  KA S+T     
Sbjct: 947  HLIAVPVSSHLNDTFRFESEKLKVGET-ISVILKTTTVNEHGLLLAVQNKAASKTSKNLG 1005

Query: 915  --TSSSKRAKKKSSY--DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV 970
              T S+ R +   S+   +G LV   +  IKP ++ +       G IH++++ D+     
Sbjct: 1006 RTTQSAMRVRGAISHGLKIGDLVTGTVKSIKPTQVTVSINDNVFGFIHVSQIMDETP--- 1062

Query: 971  ENLFSNFKIG--QTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVSEIGS 1018
            +  F   K+   Q VT R+I     K+++      PD   S + ELS+ P ++    +  
Sbjct: 1063 QGCFPTSKLNPKQEVTCRVIGGREVKTHRYLPITHPDFIHS-VPELSLLPELINTDNVPK 1121

Query: 1019 KLLFEECDVSIGQRVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQEFQRRF 1076
                +    + G +VT YV K + E   L   I+  ++ ++ +L  +  P  L+  ++ F
Sbjct: 1122 PRALK--TFNPGDKVTCYVNKFNTETKYLEVEITPEIRGRIELLLLSQTPKNLKRPEKLF 1179

Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
              G+A++  V+  +   K L L L     GI               + EG +    ++K+
Sbjct: 1180 KNGQALSATVVGPDAVHKHLCLSL----TGIHS-------------LEEGAVTVACVTKV 1222

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
            + G  GL + +    +G+     + ++C       Y E     L  +  G+FV+C +L  
Sbjct: 1223 VKG-SGLTLSLP---FGKTGNANMFHLC-----DKYAEAS---LEKFTPGKFVRCAILSN 1270

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
            S+ V+      +SLR      S  N    S+ VD   + +  I+ L    +V G+V  +T
Sbjct: 1271 SKIVK------VSLRQ-----SRVNQQAQSSAVD---EDIASIDSLEEGQLVSGFVSAIT 1316

Query: 1257 -SKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVT 1312
             +KG F  LS  +   +   N++  +V  P       P G L+  +VLS++P  K VE++
Sbjct: 1317 ENKGVFFRLSSFIVGHIQFQNVTSYFVYEPSAYSNYIPEGTLLTAKVLSIDPDKKHVELS 1376

Query: 1313 LKTSDS 1318
            L  +D+
Sbjct: 1377 LLPTDT 1382



 Score =  277 bits (708), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 187/265 (70%), Gaps = 3/265 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P++ D+F+RLV SSP+SS +W++YMAF L   ++EKAR +AERAL+TI+ REE EKLN+W
Sbjct: 1543 PQSADDFDRLVISSPDSSILWLQYMAFHLHATEIEKARVVAERALKTISFREEQEKLNVW 1602

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            VA  NLEN YG   EE++ K F+RA+QY +P KV   L  +Y ++E+ K A++L   M+K
Sbjct: 1603 VALLNLENMYGT--EESLTKAFERAVQYNEPLKVFQQLADIYIKSEKFKQAEDLYNTMLK 1660

Query: 1655 KFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            +F+    VW++    LLKQ Q +G   ++QRAL SLP   H+  IS+ A LEF+ G  +R
Sbjct: 1661 RFRQEKSVWIKFATFLLKQGQGDGTHKLLQRALKSLPEKDHVDVISKFAQLEFQLGDTER 1720

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
             +++FE  LS YPKRTDLWS+Y+D  ++ G    +R +FER I LSL  KK+KF FK+YL
Sbjct: 1721 AKALFESTLSSYPKRTDLWSVYIDMMVKHGSQKEVRDIFERVIHLSLAAKKIKFFFKRYL 1780

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVES 1798
            EYEK  G  E ++ VK+KA++YVES
Sbjct: 1781 EYEKKHGSTESVQAVKEKALQYVES 1805



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            +S +  G  + G +K +  YG+F+      L GL  +SE+S+  V NI   +  G  V  
Sbjct: 719  ISEVQTGMHLTGFVKSIMPYGVFVEFP-YGLFGLVPMSEISDKFVTNIRDHFVEGNTVVA 777

Query: 1389 KILKVDKEKRRISLGMKSS 1407
             ++K+D+EK+R  L +K S
Sbjct: 778  TVIKMDEEKKRFLLTLKMS 796


>gi|346977319|gb|EGY20771.1| rRNA biogenesis protein RRP5 [Verticillium dahliae VdLs.17]
          Length = 1790

 Score =  346 bits (887), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 327/1254 (26%), Positives = 596/1254 (47%), Gaps = 143/1254 (11%)

Query: 603  LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 662
            + L+ K +L+NS   +      +       G + +I   G  + F   + G+ P S+  +
Sbjct: 612  MRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSE 671

Query: 663  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 722
                D  + + VGQ V  +IL+V+ E  ++ +S K               F L+++ A+ 
Sbjct: 672  AFIQDPKEHFKVGQVVNVHILEVDPENQKLLVSCKDPSA-----------FGLDKQAAL- 719

Query: 723  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 782
                         +   +GS++ GKV + +D  V V  +  S++   +   QL   T +S
Sbjct: 720  -------------KALSVGSIVSGKVIQKSDDDVHVELD-GSNLKAILPLGQL---TDKS 762

Query: 783  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA---QKKKRKREASK------- 832
             +  Q+A+  +   + L DL    + +D+    N  R+A     K    EA K       
Sbjct: 763  ANKSQSALKRIHMGQTLTDL----LVLDK----NERRRAITLSSKPSLVEAGKTGKLICT 814

Query: 833  --DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQKQFLNGQSV 887
              D  V   V   +  ++   +++        + + +   + D   + F  ++    QS+
Sbjct: 815  YADAKVGAEVPGFISSIRPGAVLVRFGGNLVGVMFKTRLPIEDQEKEAFGLRK---DQSI 871

Query: 888  IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS---------YDV--GSLVQAE 936
               + A+    T    L++    +E  ++ +K  K+K S          D+  G +V+A+
Sbjct: 872  TVRIRAIDLERTR---LVVDPLTAELPSNEAKPKKEKESARPQAHGPVQDITFGQIVEAK 928

Query: 937  ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARIIAKSNKP 994
            I  I   +L ++      GR+ I+++ D   N+   E   S FK G+T+  R I   +  
Sbjct: 929  IVGIHDTQLNVETADKVQGRVDISQIFDSWDNIKDPEEPLSQFKKGETIRVRAIGLHDSK 988

Query: 995  DMK------KSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1046
            D +      +S+  + E + K S +   E+   L  E  D+ +G     +V         
Sbjct: 989  DHRFLAFSHRSYNSVLEFTAKASDIEADEL-KPLSLE--DLQVGSTHVAFVNNASRNGLW 1045

Query: 1047 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106
              IS  ++ ++  +D + + S++ +    F IG A+   V++++ ++ +L L  R     
Sbjct: 1046 TNISPVVRGRINAMDVSDDTSKMNDVINNFPIGTALKVRVIAVDAKRGVLDLSAR----- 1100

Query: 1107 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1166
             SD +  ++ D+    I    ++ G + K+      ++V++G ++ G VH  ++ +    
Sbjct: 1101 -SDSSAAVTWDS----IKPNQVLAGCVVKV--NERQIMVKLGSNVAGHVHLVDMSD---- 1149

Query: 1167 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226
                  D G  + L  YD+G  ++  V+E+ ++ +    V LS R S       NSS   
Sbjct: 1150 ------DFGDVNTLK-YDKGDAIQVSVVEVDKSNK---RVRLSTRPS----RVLNSSSPI 1195

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
            TD       +  ++ +     ++G+VK+V  KG F++L   + A V +SNLSD +++  +
Sbjct: 1196 TD-----PEITSVKQVVSGSTIRGFVKHVADKGVFVLLGGNVSALVKISNLSDRFLKEWK 1250

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1346
            + F + +LV GRVLSV+  + +VE++LK+S     +   +    ++    IV G+I++VE
Sbjct: 1251 EHFQVDQLVKGRVLSVDEGAGQVELSLKSS-VVDDNYKPLKTYKDIKPNQIVTGKIRKVE 1309

Query: 1347 SYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             +G FI ++ + N+ GLCH SE+++  V++   +Y+AG+ VK K+L +D+ K+RIS G+K
Sbjct: 1310 DFGAFIVVDGSDNVSGLCHRSEMADSPVEDARKLYKAGDVVKAKVLTLDRNKKRISFGLK 1369

Query: 1406 SSYFKNDADNLQMSSEEES----DEAIEEVGSYNRSSLLENSSVAVQDMDMES-EDGGSL 1460
             +YF +D D   M   E +    D   E+    +    L     +++ M  ++ ED    
Sbjct: 1370 PAYFDDDVD---MDEGEGAALDSDNEEEDEVDSDEGEDLAEGGASIKFMGTDNLEDSEDE 1426

Query: 1461 VLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHT-----DEAKTIDEKNNRHAKKKEK 1515
                          +V++  EQ  + NG     G        E ++   KN+   +K+ K
Sbjct: 1427 QDNADSDEDVDEDGDVDMSREQNGLSNGKYDWAGDAFDDSDKETRSAPAKNSASKQKETK 1486

Query: 1516 EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIA 1575
            + ++ EI+      L+   P+T  ++ERL+   P+SS +WI YMA  + ++++ KAR IA
Sbjct: 1487 KPKKDEIQIDRTAALDVHGPQTASDYERLLLGQPDSSALWIAYMALQMQVSELTKAREIA 1546

Query: 1576 ERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1635
            ERA++TINIRE+ EKLN+W+AY NLE  YG   +  V +VFQRA QY D +++H  L  +
Sbjct: 1547 ERAIKTINIREQTEKLNVWIAYLNLEVAYGT--KTTVEEVFQRACQYNDDQEIHERLATI 1604

Query: 1636 YERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRH 1692
            Y ++ ++K ADEL    + KF   +  +W      L     Q +  +A++ RA  +L   
Sbjct: 1605 YIQSGKHKKADELFQATVAKFGSKNPNLWTNYAHFLHATLNQPDRARALLPRATQALGEQ 1664

Query: 1693 KHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLI 1748
                 +++   LEF+  NG A+RGR+ FE +L+ +PKR DLW+  +D E+     D   +
Sbjct: 1665 HTAALMAKFGSLEFRSPNGDAERGRTTFETLLATWPKRFDLWNQLVDLEMAAPGADATAV 1724

Query: 1749 RGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            R +FER   +  L  ++    FK++ E+E     + + E V  KA E+V +  A
Sbjct: 1725 RDVFERGTKVKGLKAQRAMKWFKRWAEWEGKTDPKGK-ERVMAKAAEWVTAAKA 1777



 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 306/1280 (23%), Positives = 538/1280 (42%), Gaps = 158/1280 (12%)

Query: 5    GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL---------------- 48
            G V+ ++  +L I LP  L G    A A+  ++  +I+   +                  
Sbjct: 152  GQVSAISHHNLTIALPNNLSGNVSIA-AISDVVTAKIQQAAEASDDDDDSADEGDDDDDI 210

Query: 49   -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
             L ++F VGQ V   V+   + +    K  I LSLR      G+S   V     + A V 
Sbjct: 211  ELNSLFEVGQYVRAYVISTKEGEGSGKKNHIELSLRPEDANSGMSKNDVVANATVMAAVT 270

Query: 108  SIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 164
            S++DHGY +  G+ +    GFLP+ ++ +E   + ++PG +   +V+S+  + K+  L  
Sbjct: 271  SVQDHGYEMELGVDNKKLKGFLPKKDVGSEVDELRLQPGAVSLCLVKSV--SGKIAQLCL 328

Query: 165  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
            D + + K      +  +++   PG +V   V S    G++   L +   T D+ H     
Sbjct: 329  DSEKMGKVDNIATEATTVNTFQPGTVVDVLVTSTTGRGLLGKILGHLPVTADLIHSGAGP 388

Query: 225  PTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRA----------PPSHV- 271
               +    Y    +V AR++   P ++   +G++L P+++  +A          PP +V 
Sbjct: 389  DAVDLDAKYKIGSRVKARVICTFPNAKNPKLGISLLPHVVKLQAKKAGKGGQAKPPLNVL 448

Query: 272  KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSC 328
             +    D+  V +V+  +GL +D+    +S   +V IS V + +V  L +    +KEGS 
Sbjct: 449  PIAARVDKCTVRKVEPEIGLYVDVGVAGLS--GFVHISKVKDGKVEALYESSGPFKEGSV 506

Query: 329  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG-----MVVKGKVIAVDSFGAIVQ 383
             R R++G+   +G+     + +  E       DV  G     M+ K  V      G +V+
Sbjct: 507  HRGRVIGYSTFDGMYLMTFEPTIIEQQFIRLEDVPAGEIVSCMIEKVVVGGQGVSGLVVK 566

Query: 384  FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLA 441
               G+       H ++  +  P KKF+ G  +  RVL V+ ++  + +T KKTLV S   
Sbjct: 567  VAEGITGYVHETHFADVRLQHPEKKFREGMTVKARVLSVRPRKRQMRLTLKKTLVNSDTP 626

Query: 442  ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 501
            I+ S+ E        G I+ I  HG  + FY GV+G+ P S++      +P   + VGQV
Sbjct: 627  IIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSEAFIQDPKEHFKVGQV 686

Query: 502  VKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVDVVTPNAVVVYVI 556
            V   I+   P ++++ +S    P+    D    L     GS+VSG   V+  +   V+V 
Sbjct: 687  VNVHILEVDPENQKLLVS-CKDPSAFGLDKQAALKALSVGSIVSG--KVIQKSDDDVHVE 743

Query: 557  AKGYS-KGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NESSN-LLLSAKYS 610
              G + K  +P   L D  + A   +S +K    G     LLVLD NE    + LS+K S
Sbjct: 744  LDGSNLKAILPLGQLTD--KSANKSQSALKRIHMGQTLTDLLVLDKNERRRAITLSSKPS 801

Query: 611  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG--FAPRSKAVDGQRA 666
            L+ + +  +L    +     + V G++ +I      VRF G L G  F  R    D ++ 
Sbjct: 802  LVEAGKTGKLICTYADAKVGAEVPGFISSIRPGAVLVRFGGNLVGVMFKTRLPIEDQEKE 861

Query: 667  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 726
                     QS+   I  ++ E  R+ +    +   S +A   +     E++ A  Q+  
Sbjct: 862  AFG--LRKDQSITVRIRAIDLERTRLVVDPLTAELPSNEAKPKK-----EKESARPQAHG 914

Query: 727  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL----------- 775
                    V+    G ++E K+   +D    ++ E    V G +   Q+           
Sbjct: 915  P-------VQDITFGQIVEAKIVGIHD--TQLNVETADKVQGRVDISQIFDSWDNIKDPE 965

Query: 776  -------AGATVESGSVIQAAILDVAKAERLVDLSLKTV-FIDRFREANSNRQAQKKKRK 827
                    G T+     ++A  L  +K  R +  S ++   +  F    S+ +A   + K
Sbjct: 966  EPLSQFKKGETIR----VRAIGLHDSKDHRFLAFSHRSYNSVLEFTAKASDIEAD--ELK 1019

Query: 828  REASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQ--KQFLNG 884
              + +DL V  T  A V     N L  ++ P     I    VSD +T K       F  G
Sbjct: 1020 PLSLEDLQVGSTHVAFVNNASRNGLWTNISPVVRGRINAMDVSD-DTSKMNDVINNFPIG 1078

Query: 885  QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLE 944
             ++   V+A+     A R +L L A S++  + +  + K +    G +V+     +   +
Sbjct: 1079 TALKVRVIAV----DAKRGVLDLSARSDSSAAVTWDSIKPNQVLAGCVVK-----VNERQ 1129

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLW 1002
            + +K G    G +H+ +++DD  +V  N    +  G  +   ++   KSNK         
Sbjct: 1130 IMVKLGSNVAGHVHLVDMSDDFGDV--NTL-KYDKGDAIQVSVVEVDKSNK-------RV 1179

Query: 1003 ELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1060
             LS +PS +  + S I    +     V  G  + G+V  V ++   + +  ++ A + I 
Sbjct: 1180 RLSTRPSRVLNSSSPITDPEITSVKQVVSGSTIRGFVKHVADKGVFVLLGGNVSALVKI- 1238

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
             S      L+E++  F + + V G VLS+++    + L L+          VD +   ++
Sbjct: 1239 -SNLSDRFLKEWKEHFQVDQLVKGRVLSVDEGAGQVELSLK-------SSVVDDNYKPLK 1290

Query: 1121 TF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
            T+  I    IV G+I K+      +VV    ++ G  H +E+ +  V            D
Sbjct: 1291 TYKDIKPNQIVTGKIRKVEDFGAFIVVDGSDNVSGLCHRSEMADSPVE-----------D 1339

Query: 1179 PLSGYDEGQFVKCKVLEISR 1198
                Y  G  VK KVL + R
Sbjct: 1340 ARKLYKAGDVVKAKVLTLDR 1359



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 163/364 (44%), Gaps = 41/364 (11%)

Query: 89   KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSG-----IDVKP- 142
            K LSLE +Q G    A+V +   +G   +   P   G +   ++++++      I+  P 
Sbjct: 1019 KPLSLEDLQVGSTHVAFVNNASRNGLWTNIS-PVVRGRINAMDVSDDTSKMNDVINNFPI 1077

Query: 143  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
            G  L+  V ++D  R V+ LS+  D+ +         ++ D + P  +++  V  + E  
Sbjct: 1078 GTALKVRVIAVDAKRGVLDLSARSDSSA--------AVTWDSIKPNQVLAGCVVKVNERQ 1129

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            +M+   +   G V +  + + F   N    Y++   +   ++ VD +++ V L+  P  +
Sbjct: 1130 IMVKLGSNVAGHVHLVDMSDDFGDVNTLK-YDKGDAIQVSVVEVDKSNKRVRLSTRPSRV 1188

Query: 263  HNRAPPSHVKVGDIYDQSKVVR-----------VDRGLGLLLDIPSTPVSTPAYVTISDV 311
             N + P  +   +I    +VV             D+G+ +LL       +  A V IS++
Sbjct: 1189 LNSSSP--ITDPEITSVKQVVSGSTIRGFVKHVADKGVFVLLG-----GNVSALVKISNL 1241

Query: 312  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVV 368
            ++  +++ ++ ++    V+ R+L      G     LK+S  +     + T+ D+KP  +V
Sbjct: 1242 SDRFLKEWKEHFQVDQLVKGRVLSVDEGAGQVELSLKSSVVDDNYKPLKTYKDIKPNQIV 1301

Query: 369  KGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 424
             GK+  V+ FGA +   G   V  LC    M++  +    K +K G  +  +VL +    
Sbjct: 1302 TGKIRKVEDFGAFIVVDGSDNVSGLCHRSEMADSPVEDARKLYKAGDVVKAKVLTLDRNK 1361

Query: 425  KRIT 428
            KRI+
Sbjct: 1362 KRIS 1365



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 6/170 (3%)

Query: 365  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
            G  ++G V  V   G  V   G V AL  + ++S+  + +  + F+V   +  RVL V  
Sbjct: 1209 GSTIRGFVKHVADKGVFVLLGGNVSALVKISNLSDRFLKEWKEHFQVDQLVKGRVLSVDE 1268

Query: 424  -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF--VRFYNGVQGFAP 480
             + ++ ++ K ++V      L +Y +     I  G I K+E  G F  V   + V G   
Sbjct: 1269 GAGQVELSLKSSVVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGSDNVSGLCH 1328

Query: 481  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
            RSE+   P  +   +Y  G VVK ++++     +RI  SF +KP    +D
Sbjct: 1329 RSEMADSPVEDARKLYKAGDVVKAKVLTLDRNKKRI--SFGLKPAYFDDD 1376



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 8/134 (5%)

Query: 1275 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSN 1331
            ++ +D  ++ PEK+F  G  V  RVLSV P  +++ +TLK    +T   S+   I +   
Sbjct: 578  THFADVRLQHPEKKFREGMTVKARVLSVRPRKRQMRLTLK----KTLVNSDTPIIKSFDE 633

Query: 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1391
            + VG   +G I  +  +G  I      + G   VS++SE  + + +  ++ G+ V V IL
Sbjct: 634  VEVGQQALGTISDISPHGARIEFYK-GVRGWLPVSQMSEAFIQDPKEHFKVGQVVNVHIL 692

Query: 1392 KVDKEKRRISLGMK 1405
            +VD E +++ +  K
Sbjct: 693  EVDPENQKLLVSCK 706



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 121/586 (20%), Positives = 244/586 (41%), Gaps = 96/586 (16%)

Query: 859  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 918
            Y H   +A V      + P+K+F  G +V A V+++       RL L    ++    S +
Sbjct: 574  YVHETHFADVR----LQHPEKKFREGMTVKARVLSVRPRKRQMRLTLKKTLVN----SDT 625

Query: 919  KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 978
               K     +VG      I++I P   R++F  G  G + ++++++     +++   +FK
Sbjct: 626  PIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSE---AFIQDPKEHFK 682

Query: 979  IGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQRVTGYV 1037
            +GQ V   I+    + D +   L      PS   + +  + K L      S+G  V+G V
Sbjct: 683  VGQVVNVHIL----EVDPENQKLLVSCKDPSAFGLDKQAALKAL------SVGSIVSGKV 732

Query: 1038 -YKVDNEWALLTISRHLKAQL---FILDSAYEPSELQEFQRRFHIGKAVTG-HVLSINKE 1092
              K D++  +     +LKA L    + D +   S  Q   +R H+G+ +T   VL  N+ 
Sbjct: 733  IQKSDDDVHVELDGSNLKAILPLGQLTDKSANKS--QSALKRIHMGQTLTDLLVLDKNER 790

Query: 1093 KKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV--GGLVVQIG 1148
            ++ + L  +P   + G + K +    D           VG  +   +S +  G ++V+ G
Sbjct: 791  RRAITLSSKPSLVEAGKTGKLICTYADAK---------VGAEVPGFISSIRPGAVLVRFG 841

Query: 1149 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1208
             +L G +  T L       P+   ++  F      D+   V+ + +++ RT         
Sbjct: 842  GNLVGVMFKTRL-------PIEDQEKEAFGLRK--DQSITVRIRAIDLERT--------- 883

Query: 1209 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEK--------IEDLSPNMIVQGYVKNVTSKGC 1260
              R  +D +    +++L ++   P K  E         ++D++   IV+  +  +     
Sbjct: 884  --RLVVDPL----TAELPSNEAKPKKEKESARPQAHGPVQDITFGQIVEAKIVGIHDTQL 937

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL-------------SK 1307
             +  + K+  +V +S + D +    + E P+ +   G  + V  +             S 
Sbjct: 938  NVETADKVQGRVDISQIFDSWDNIKDPEEPLSQFKKGETIRVRAIGLHDSKDHRFLAFSH 997

Query: 1308 R-----VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
            R     +E T K SD   A + +  +L +L VG   +  +      GL+  I    + G 
Sbjct: 998  RSYNSVLEFTAKASDIE-ADELKPLSLEDLQVGSTHVAFVNNASRNGLWTNISPV-VRGR 1055

Query: 1363 CHVSELSED--HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
             +  ++S+D   ++++   +  G  +KV+++ VD ++  + L  +S
Sbjct: 1056 INAMDVSDDTSKMNDVINNFPIGTALKVRVIAVDAKRGVLDLSARS 1101



 Score = 49.3 bits (116), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 136/290 (46%), Gaps = 37/290 (12%)

Query: 1123 IHEGDIVGGRISK---ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
            +  G+IV   I K      GV GLVV++   + G VH T   ++ +  P     E +F  
Sbjct: 540  VPAGEIVSCMIEKVVVGGQGVSGLVVKVAEGITGYVHETHFADVRLQHP-----EKKF-- 592

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                 EG  VK +VL +    R    + L+L+ +L      NS       DTP   ++  
Sbjct: 593  ----REGMTVKARVLSVRPRKR---QMRLTLKKTL-----VNS-------DTP--IIKSF 631

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            +++       G + +++  G  I   + +   + +S +S+ +++ P++ F +G++V   +
Sbjct: 632  DEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSEAFIQDPKEHFKVGQVVNVHI 691

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
            L V+P ++++ V+ K  D       +   L  L VG IV G++ +     + + ++ +NL
Sbjct: 692  LEVDPENQKLLVSCK--DPSAFGLDKQAALKALSVGSIVSGKVIQKSDDDVHVELDGSNL 749

Query: 1360 VGLCHVSELSEDHVDNIETIYR---AGEKVKVKILKVDKEKRRISLGMKS 1406
              +  + +L++   +  ++  +    G+ +   +L +DK +RR ++ + S
Sbjct: 750  KAILPLGQLTDKSANKSQSALKRIHMGQTL-TDLLVLDKNERRRAITLSS 798


>gi|303291157|ref|XP_003064865.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453891|gb|EEH51199.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 2229

 Score =  344 bits (883), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 249/833 (29%), Positives = 399/833 (47%), Gaps = 140/833 (16%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA------------------ 43
           KL GVV +VN+  + + LP GLRG    A+A D  +  + +                   
Sbjct: 100 KLMGVVVDVNDAGMSLSLPNGLRGSVTRAEASDAFVAAKKKKKTTKMTKMKKKTADSSES 159

Query: 44  --------------------NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLR 83
                                    L  +F VGQ++  +V++    K + G ++I LS R
Sbjct: 160 ESESESESDESDSDDDDEALTNAEPLAALFKVGQILRAVVVR--SGKGKSGGKRIDLSTR 217

Query: 84  LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGIDVKP 142
           LS +  G++ + + +G  + A V  +E HG++L+FG+  +  GFLPR ++       +  
Sbjct: 218 LSRVCDGVAKDALVDGAAVPACVTGVEAHGFVLNFGIDDAPIGFLPRKSVRAEMASSLAR 277

Query: 143 GLLLQGVV----------------------RSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 180
           G +L  V+                      R++    +VV  ++D   VS  VT++    
Sbjct: 278 GAILDVVINASAGPGGDGGNGEDGGGKEKKRALVTNSRVVQCTADAKRVSSAVTRESDYT 337

Query: 181 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN---------TFPTTNWKN 231
           S+  L+PGM+V+ RV+++L +G+ ++F+TYFT T+D FHL +           PT +   
Sbjct: 338 SMQSLLPGMLVNARVRAVLSDGISVNFMTYFTATIDAFHLGDGKGTDGKHLNGPTPDVSK 397

Query: 232 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA-------------PPSHV---KVGD 275
            +    +  AR+LFVD  ++ +GLTL P+L+  +A             P SH+   K G 
Sbjct: 398 THKVGDRCRARVLFVDADAKRIGLTLRPHLVSPQAVSVQPSSTETGGDPLSHLNLPKPGT 457

Query: 276 IYDQSKVVRVDRGLGLLLDIP-STPVSTP--------------------AYVTISDVAEE 314
            YD + V RVD  +G+LL++P S   + P                     YV ISD  ++
Sbjct: 458 SYDAAIVRRVDANVGVLLELPPSGAAAAPTDDESRMGKQSYSPPKGACLGYVHISDATDD 517

Query: 315 EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 374
            + +LEKK+K G+ VR R++G R ++G+AT   K +  E    +  ++ PGM VKG+V+A
Sbjct: 518 HIERLEKKFKVGATVRARVIGRRVVDGVATASCKKTVVEQPFLSLDELTPGMKVKGEVVA 577

Query: 375 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHK 432
           V+ +GA+++   GVKAL P  H+S+        K   GA L FRVL   V   R TVT K
Sbjct: 578 VEPYGAVIKLAPGVKALLPPHHVSDIPGRTTNAKVCPGARLNFRVLSVDVARSRATVTRK 637

Query: 433 KTLVKSKLAILSSYAEAT--DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 490
           KT++ S L ++++  +AT      THG +T +E +G FV  Y  ++G A   +LGL PG 
Sbjct: 638 KTILNSDLDVIATMEDATRAGGATTHGVVTGVEPYGVFVSLYGALRGLAGAQDLGLAPGQ 697

Query: 491 EPSSMYHVGQVVKCRIMSSIPASRRINLSFM------------------MKPTRVSEDDL 532
            P+  + VGQ V+ R++ +     ++ LS                        R+ +   
Sbjct: 698 TPTEAFQVGQCVRARVIRADNGPGKLKLSLAPGGSGDGVVLHDDEGGGGGGGGRLDDVGA 757

Query: 533 VKLGSLV-SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 591
              G+++ S VV  V  +   V V   G   G I   H++DH      + +   P     
Sbjct: 758 PPPGTIIESAVVKRVDADTGNVLVTLPGGVPGVITAAHVSDHPVTGAALVATYAPDDAIG 817

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIE-TGCFVRFL 648
            L+ L+ +    +LS K SL+ +A+   LP+  + +   +   GYV +  +  G FVRFL
Sbjct: 818 PLVALEAKPRRSILSRKTSLVTAARSDALPASVADVVVGASYPGYVASATQNAGVFVRFL 877

Query: 649 GRLTGFAPRSKAVDGQR---ADLSKTYYVGQSVRSNI--LDVNSETGRITLSL 696
           GRLTG AP S+ V G R   AD  + +  GQSVR+ +  +D   +  R++LSL
Sbjct: 878 GRLTGLAPPSQLVPGARGGDADPEECFAPGQSVRARVTAVDATVDPPRLSLSL 930



 Score =  277 bits (709), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 137/319 (42%), Positives = 198/319 (62%), Gaps = 25/319 (7%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--APRTPDEFERLVRSSPNSSFVWIKYMA 1560
            ++  ++  K +EK  RE E+   E+ L +    AP T  E+E+L+  +P SS+ W+K++A
Sbjct: 1904 EKPKSKREKAREKANREMELHRKEQALRDAADRAPETAAEYEKLIMQTPRSSYAWLKFVA 1963

Query: 1561 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-PEEAVVKVFQRA 1619
            F +S+   + AR+  ERAL+ I   EE E++NIW+AY NLEN++G P P EA  + F+RA
Sbjct: 1964 FHVSVGAYDDARACLERALKAIPASEEEERMNIWIAYLNLENKHGKPSPVEATERTFKRA 2023

Query: 1620 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-------SCKVWLRRVQRL-- 1670
             Q  +PKK+HL L G++ER+  +  A  +L + +KKF         S KVWL  V+    
Sbjct: 2024 CQVANPKKLHLTLAGVHERSGNDANARRVLAEAVKKFSQARSSITLSAKVWLAHVRAAIL 2083

Query: 1671 -LKQQQEG------------VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
             L     G            V+  + RA  +LP+ KH+K + QTA+ EF+ G  +RGR+M
Sbjct: 2084 SLDAANPGTGTGGGAVDADVVKRALDRATQALPKRKHVKLMVQTALCEFREGRPERGRTM 2143

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1777
            FE IL  YP+RTD+WS Y+DQEI+ GD D  RGL ERA  L L PK MKFLFKK+L++E+
Sbjct: 2144 FESILRNYPRRTDIWSTYVDQEIKCGDDDRTRGLLERATHLELTPKSMKFLFKKFLDFER 2203

Query: 1778 SVGEEERIEYVKQKAMEYV 1796
              G +E++E VK+ AM+YV
Sbjct: 2204 KRGNKEKVEKVKRMAMDYV 2222



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)

Query: 741  GSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVES----------GSVIQAA 789
            GS I   VH + ++GV++   +  SD+   +  HQ   A  +           G+ +   
Sbjct: 1018 GSSISCVVHATREYGVLMDVPDVDSDLVALMAFHQTPAAADDDDDDAAPPPDEGTKVNGV 1077

Query: 790  ILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH-----------Q 838
            +LDV++ + +VD+  +   +   +   S ++ + KK +     D               +
Sbjct: 1078 VLDVSRRDGVVDVGARPGLLAMMKPGPSPKKTRSKKTRGGGGGDASTTYLPPPRPKKGTE 1137

Query: 839  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 872
            TV A+VE+VK  Y+VLSLP++  +IGY +    N
Sbjct: 1138 TV-AVVELVKPEYVVLSLPKHGGAIGYCAARSVN 1170



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 107/483 (22%), Positives = 194/483 (40%), Gaps = 92/483 (19%)

Query: 955  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1014
            G +HI++  DD    +E L   FK+G TV AR+I +     +  +   +  ++   L++ 
Sbjct: 507  GYVHISDATDDH---IERLEKKFKVGATVRARVIGRRVVDGVATASCKKTVVEQPFLSLD 563

Query: 1015 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1074
            E+           + G +V G V  V+   A++ ++  +KA L        P  + +   
Sbjct: 564  EL-----------TPGMKVKGEVVAVEPYGAVIKLAPGVKALL-------PPHHVSDIPG 605

Query: 1075 RFHIGKAVTG-----HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1129
            R    K   G      VLS++        V R        KT+  S+ ++   + +    
Sbjct: 606  RTTNAKVCPGARLNFRVLSVD--------VARSRATVTRKKTILNSDLDVIATMEDATRA 657

Query: 1130 GGRISKILSGVGGLVVQIGPH-----LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            GG  +       G+V  + P+     LYG      L+ +  +  L G   GQ  P   + 
Sbjct: 658  GGATTH------GVVTGVEPYGVFVSLYG-----ALRGLAGAQDL-GLAPGQT-PTEAFQ 704

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS- 1243
             GQ V+ +V+   R   G   ++LSL        S +   L  D    G    +++D+  
Sbjct: 705  VGQCVRARVI---RADNGPGKLKLSLAPG----GSGDGVVLHDDEGGGGGGGGRLDDVGA 757

Query: 1244 --PNMIVQGYV---KNVTSKGCFIMLSRKLDAKVLLSNLSD------GYVESPEKEFPIG 1292
              P  I++  V    +  +    + L   +   +  +++SD        V +   +  IG
Sbjct: 758  PPPGTIIESAVVKRVDADTGNVLVTLPGGVPGVITAAHVSDHPVTGAALVATYAPDDAIG 817

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ------IKRVE 1346
             LVA   L  +P  +R  ++ KTS   TA++S+    S   V D+V+G           +
Sbjct: 818  PLVA---LEAKP--RRSILSRKTS-LVTAARSDALPAS---VADVVVGASYPGYVASATQ 868

Query: 1347 SYGLFITIENTNLVGLCHVSEL---SEDHVDNIETIYRAGEKVKVKILKVDK--EKRRIS 1401
            + G+F+      L GL   S+L   +     + E  +  G+ V+ ++  VD   +  R+S
Sbjct: 869  NAGVFVRFLG-RLTGLAPPSQLVPGARGGDADPEECFAPGQSVRARVTAVDATVDPPRLS 927

Query: 1402 LGM 1404
            L +
Sbjct: 928  LSL 930


>gi|116487529|gb|AAI26004.1| LOC779090 protein [Xenopus laevis]
          Length = 1427

 Score =  343 bits (881), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 354/1386 (25%), Positives = 635/1386 (45%), Gaps = 151/1386 (10%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLP--TIF 53
            M   G V    + +L + LP  L G  +A    DA   ++  ++E ++  + L+P   ++
Sbjct: 80   MLFLGCVKRTKDFELTVSLPYCLTGYIQATNICDAYTNLISEQVEKDDPLEALVPLSELY 139

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C +  L+      G   + LS+    + K L+  +++ GMVL+  V S+EDHG
Sbjct: 140  SPGMLVRCAISSLETTAS--GFPSVKLSVNPKHVNKALNTGSIKTGMVLSGCVSSVEDHG 197

Query: 114  YILHFGLPSFTGFLPRNNLA-----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLPR            G  ++ G  L  VV  +    K+V LS   + 
Sbjct: 198  YLVDIGVAGTKAFLPRQKAQLFLSQAGQGSLLRVGEYLNCVVEEVKNEGKIVRLSIIQND 257

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            V+  +    +  +++ L+PG++   +++ ++ N + LSFL+ +TG VD  H +       
Sbjct: 258  VASALATVEQNWNLNNLLPGLVFKAQIEKVMHNNITLSFLSSYTGFVDFLHFE-----PK 312

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAPP-SHVKVGDIYDQSKVVRV 285
                Y + ++V A IL++DP+++ + LTL    L   N  P  +   VG + D   V  +
Sbjct: 313  KIGSYKEGQEVKACILWLDPSTKTIRLTLRQCFLQPGNTLPQLTSDWVGSVLDNCVVQTL 372

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G + ++    +       +S   +       +K+K+G+  + RI  F  ++ +   
Sbjct: 373  FKNAGAVFELEGGNLGFAFKHHLSASKQPHF----EKFKKGTTHKGRITDFSPMDEMHIL 428

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             LK      L   H D++PG V++G V  +++ G +VQ    +  L P  H ++  +  P
Sbjct: 429  SLKEKVITNLFLRHEDIQPGQVLEGTVKCMEAVGMVVQITDHLTGLVPKLHFADVLLKHP 488

Query: 406  GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             KK+ +G ++  +VL V +  +++ +T K+TL+KS L +L+SY +A   LITHG+I  I+
Sbjct: 489  EKKYIIGNKIKCKVLTVVTCERKLILTRKRTLMKSTLPVLASYEDAQPGLITHGFIVAIK 548

Query: 464  KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
             +GC V+FYN VQG APR ELG L         ++ GQV+K +++   P ++++ LSF +
Sbjct: 549  DYGCLVKFYNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVQVLECNPQTQQLLLSFRI 608

Query: 523  KPTRVSEDD--------LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 572
                 +E +         VKL  G LV   V   T   V V V+ +  S   IP  HL+D
Sbjct: 609  TEEGHTEQEQRFLKKIKAVKLDVGKLVDIRVLSKTDKGVNVLVLPE-ESPAFIPKMHLSD 667

Query: 573  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSV 630
            H+ +  ++   ++ G +    + L +   + +L+ K  LI+S ++       S +     
Sbjct: 668  HVSNCELLWHTLQEGDDIPGAMCLSSLKGHSILTKKSLLISSVEKGSCVKVISEVQTGMH 727

Query: 631  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
            + G+V +I+  G FV F   L G  P S+  D    ++   +  G +V + ++ ++ E  
Sbjct: 728  LTGFVKSIMPYGVFVEFPYGLFGLVPMSEISDKFVTNIRDHFVEGNTVVATVIKMDEEKK 787

Query: 691  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ------SSKHNGSELKWVEGFIIGSVI 744
            R  L+LK S C+  D S ++  FLL +  + LQ      + K +  +   +   I G  +
Sbjct: 788  RFLLTLKMSECAPDDYS-IEGLFLLSQCFSELQLMKGLLARKGDPEDELSIYTLIAGQKL 846

Query: 745  EGKVHESNDFGVVVSFEEHSDVYGF----ITHHQLAGATVESGSVIQAAILDVAKAERLV 800
               V  + + G  V F   S + G      T + +    + +G  ++A +L V      V
Sbjct: 847  TLVVENAEENG-PVQFSAGS-ISGAQTVSATQYHIGDKALVAGQKVKAVVLHVDMLTLHV 904

Query: 801  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 860
             +SL    +               K+K+   K    H   +A V+ V E + V+SL +  
Sbjct: 905  HVSLNQTLL---------------KKKQNVPKMNSSH---SADVQHVAEEFAVVSLADSA 946

Query: 861  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL-KAISETE---- 914
            H I     S  N T +F  ++   G++ I+ ++   + +  G LL +  KA S+T     
Sbjct: 947  HLIAVPVSSHLNDTFRFESEKLKVGET-ISVILKTTTVNEHGLLLAVQNKAASKTSKNLG 1005

Query: 915  --TSSSKRAKKKSSY--DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV 970
              T S+ R +   S+   +G LV   +  IKP ++ +       G IH++++ D+     
Sbjct: 1006 RTTQSAMRVRGAISHGLKIGDLVTGTVKSIKPTQVTVSINDNVFGFIHVSQIMDETP--- 1062

Query: 971  ENLFSNFKIG--QTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVSEIGS 1018
            +  F   K+   Q VT R+I     K+++      PD   S + ELS+ P ++    +  
Sbjct: 1063 QGCFPTSKLNPKQEVTCRVIGGREVKTHRYLPITHPDFIHS-VPELSLLPELINTDNVPK 1121

Query: 1019 KLLFEECDVSIGQRVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQEFQRRF 1076
                +    + G +VT YV K + E   L   I+  ++ ++ +L  +  P  L+  ++ F
Sbjct: 1122 PRALK--TFNPGDKVTCYVNKFNTETKYLEVEITPEIRGRIELLLLSQTPKNLKRPEKLF 1179

Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
              G+A++  V+  +   K L L L     GI               + EG +    ++K+
Sbjct: 1180 KNGQALSATVVGPDAVHKHLCLSL----TGIHS-------------LEEGAVTVACVTKV 1222

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
            + G  GL + +    +G+     + ++C       Y E     L  +  G+FV+C +L  
Sbjct: 1223 VKG-SGLTLSLP---FGKTGNANMFHLC-----DKYAEAS---LEKFTPGKFVRCAILSN 1270

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
            S+ V+      +SLR      S  N    S+ VD   + +  I+ L    +V G+V  +T
Sbjct: 1271 SKIVK------VSLRQ-----SRVNQQAQSSAVD---EDIASIDSLEEGQLVSGFVSAIT 1316

Query: 1257 -SKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVT 1312
             +KG F  LS  +   +   N++  +V  P       P G L+  +VLS++P  K VE++
Sbjct: 1317 ENKGVFFRLSSFIVGHIQFQNVTSYFVYEPSAYSNYIPEGTLLTAKVLSIDPDKKHVELS 1376

Query: 1313 LKTSDS 1318
            L  +D+
Sbjct: 1377 LLPTDT 1382



 Score = 44.7 bits (104), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 1324 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
            S +  +S +  G  + G +K +  YG+F+      L GL  +SE+S+  V NI   +  G
Sbjct: 714  SCVKVISEVQTGMHLTGFVKSIMPYGVFVEFP-YGLFGLVPMSEISDKFVTNIRDHFVEG 772

Query: 1384 EKVKVKILKVDKEKRRISLGMKSSYFKND 1412
              V   ++K+D+EK+R  L +K S    D
Sbjct: 773  NTVVATVIKMDEEKKRFLLTLKMSECAPD 801


>gi|74183408|dbj|BAE36581.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score =  342 bits (876), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 277/926 (29%), Positives = 460/926 (49%), Gaps = 64/926 (6%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
           M++ G V EV+E +LV+ LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 84  MRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLLRLPELF 143

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
             G LV C+V  LD    E GK+ + LS+    + K LS + ++ GM+LT  V S+EDHG
Sbjct: 144 SPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVSSLEDHG 201

Query: 114 YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
           Y++  G+     FL      E     N G   K G  L  VV  +     VV LS +   
Sbjct: 202 YLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSLSVEHSE 261

Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
           VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+F G VD  HL+       
Sbjct: 262 VSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE-----PK 316

Query: 229 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
               Y+ ++ V A IL V P +R V L+L P  LH   P + +   ++G + D   V   
Sbjct: 317 KMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGF 376

Query: 286 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
            +  G +  +    +   AY  +S +++ +     + +K GS  + RI+ +  ++ LA  
Sbjct: 377 FKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALL 433

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
            L+ S        + D+K G VVKG V+A+  FG +V+    +K L P  H+++  +  P
Sbjct: 434 SLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNP 493

Query: 406 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
            KK+  G E+  RVL    ++K++ +T KKTLV SKL++++ Y  A   L THG I +++
Sbjct: 494 EKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVIIRVK 553

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 522
            +GC V+FYN VQG  P+ EL      +P ++++ GQVVK  ++S  P+  R+ LSF ++
Sbjct: 554 DYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLL 613

Query: 523 KPTRVSEDDL---------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
             +R  +  +         V++G LV   V   T   + V ++    +   +PT HL+DH
Sbjct: 614 SDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPTPHLSDH 672

Query: 574 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
             +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   S I P  ++
Sbjct: 673 AANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLL 732

Query: 632 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
            G+V  I E G FV+F   L+G +P++   D      S+ +  GQ+V + + +V+    R
Sbjct: 733 IGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQR 792

Query: 692 ITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVIEGK 747
           + LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G V++  
Sbjct: 793 MLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMVLDAV 852

Query: 748 VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
           VHE   D  VV S +   D+    + +  AG  VE G   +  +L V   +  V +SL  
Sbjct: 853 VHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEVHVSLHQ 912

Query: 807 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
             ++R           K ++ R++S+    HQ    IV+ ++E++ V SL E  H + ++
Sbjct: 913 DLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETGHLVAFS 954

Query: 867 SVSDYN-TQKFPQKQFLNGQSVIATV 891
            +S  N T  F  ++   GQ V  T+
Sbjct: 955 LISHLNDTFHFDSEKLRVGQGVCLTL 980



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 106/467 (22%), Positives = 190/467 (40%), Gaps = 73/467 (15%)

Query: 466 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFM 521
           G   R  +GV  +A  S L        +  +  G   KCRI+  S +     ++L  S +
Sbjct: 381 GAIFRLKDGVLAYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSII 440

Query: 522 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 581
             P     D  +K+G++V G V  + P  ++V V  +   KG +P+ HLAD      +MK
Sbjct: 441 AAPFLRYHD--IKIGTVVKGTVLAIKPFGILVKVGEQ--IKGLVPSMHLAD-----IMMK 491

Query: 582 SVIK---PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 637
           +  K   PG E   ++L+ D E+  L+++ K +L+ S   L +      P    HG +  
Sbjct: 492 NPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVIIR 551

Query: 638 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
           + + GC V+F   + G  P+ +       D    +Y GQ V+  +L       R+ LS +
Sbjct: 552 VKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611

Query: 698 QSCCSSTDASFMQEHFLLEE---KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 754
                           LL +   K   ++SS+     ++      IG +++ KV E    
Sbjct: 612 ----------------LLSDSRPKDPGVESSQKKTGAVR------IGQLVDVKVLEKTKT 649

Query: 755 GVVVSFEEHSD-------------VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD 801
           G+ V+   H+                G + HH L     ++G  +   +L ++++ER + 
Sbjct: 650 GLEVAILPHNTPAFLPTPHLSDHAANGPLLHHWL-----QTGDTLHR-VLCLSQSERHIL 703

Query: 802 LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 861
           L  K   +      ++    Q  K   E    +     +   V+ +KE  + +  P    
Sbjct: 704 LCRKPALV------STVEGGQDPKSLSEIQPGM----LLIGFVKCIKEYGVFVQFPSGLS 753

Query: 862 SIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 908
            +   ++        P + F+ GQ+V+A V  +  S    R+LL L+
Sbjct: 754 GLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQ--RMLLSLR 798



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
            ++  GV           Y RV         +SD    ++   F P S +      KC+++
Sbjct: 385  RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
            + S+         LSLR S+              +  P     +  D+    +V+G V  
Sbjct: 423  DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            +   G  + +  ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK
Sbjct: 463  IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
             +   T+  S I        G    G I RV+ YG  +   N ++ GL    ELS  H+ 
Sbjct: 523  KT-LVTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 581  DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 147/708 (20%), Positives = 271/708 (38%), Gaps = 99/708 (13%)

Query: 622  ASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVR 679
            A  + P  ++ G V ++ + G  V   +G    F    KA +  R  +    + VGQ + 
Sbjct: 181  ADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLT 240

Query: 680  SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 739
              + +V S  G ++LS++ S  SS  A+                       E  W    +
Sbjct: 241  CVVEEVKSNGGVVSLSVEHSEVSSAFAT----------------------EEQSWNLNNL 278

Query: 740  IGSV-IEGKVHESNDFGVVVSFEEH-SDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 797
            +  + ++ +V +   FG+ ++F      +  F+        +  S   ++A IL V    
Sbjct: 279  LPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLEPKKMGSYSSNQTVKACILCVHPRT 338

Query: 798  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 857
            R+V LSL+ +F+   R              R + + LG       +    K    +  L 
Sbjct: 339  RVVRLSLRPIFLHPGRPLT-----------RISYQQLGAVLDDVPVQGFFKNAGAIFRL- 386

Query: 858  EYNHSIGYASVSDYNTQK--FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 915
              +  + YA VS  +  K  F  + F  G +    ++   S      LL L K+I     
Sbjct: 387  -KDGVLAYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDY-SQMDELALLSLRKSIIAAPF 444

Query: 916  SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 975
                  K      +G++V+  +  IKP  + +K G    G +    + D    +++N   
Sbjct: 445  LRYHDIK------IGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD---IMMKNPEK 495

Query: 976  NFKIGQTVTARII-----AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1030
             +  G  V  R++     AK     +KK+ +     K S++T  E G+K   +   V I 
Sbjct: 496  KYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTS---KLSLITCYE-GAKPGLQTHGVIIR 551

Query: 1031 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1090
             +  G + K  N+   L     L  Q            + + +  F+ G+ V   VLS  
Sbjct: 552  VKDYGCIVKFYNDVQGLVPKHELSTQ-----------HIPDPETVFYTGQVVKVAVLSCE 600

Query: 1091 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1150
              K+ + L  R   D         S+      +  G +V  ++  +     GL V I PH
Sbjct: 601  PSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKV--LEKTKTGLEVAILPH 658

Query: 1151 -LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
                 +    L +   + PL  +     D L           +VL +S++ R   H+ L 
Sbjct: 659  NTPAFLPTPHLSDHAANGPLLHHWLQTGDTLH----------RVLCLSQSER---HILLC 705

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
             + +L  +S+             G+  + + ++ P M++ G+VK +   G F+     L 
Sbjct: 706  RKPAL--VSTVEG----------GQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLS 753

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
                 + +SD +V +P + F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 754  GLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSD 801


>gi|170085507|ref|XP_001873977.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651529|gb|EDR15769.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1468

 Score =  342 bits (876), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 339/1226 (27%), Positives = 568/1226 (46%), Gaps = 152/1226 (12%)

Query: 620  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
            S  + + P ++V   +  I  TG  ++ LG   G         G +A     Y VG+ VR
Sbjct: 338  SSVTSVLPGALVQSLITAIHPTGLNLQVLGFFEGTVDPVHLKKGGKA-----YQVGKKVR 392

Query: 680  SNIL-DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV-EG 737
            + IL + +S   R  L+L     + +               A    SK   +E K + E 
Sbjct: 393  ARILYEYSSSPPRFALALVDHLTNLS---------------APCIKSKELPAETKSIQEA 437

Query: 738  FIIGSVIEGK--VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES---------GSVI 786
            F +G++IE    +    + G++V  E    V GF+    L+   V S         G++ 
Sbjct: 438  FPLGTIIESAKVLRVETERGIIV--EVQPGVEGFVHISHLSEDHVPSLSSTGPWKPGTLH 495

Query: 787  QAAILDVAKAERLVDLSLKTVFID-RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 845
            +A +      + L+ LS K   I+ +F + +                D+ V + +   ++
Sbjct: 496  RARVTGYFSFDGLLQLSFKPSIIEQKFLQVS----------------DVEVGEVIKGTIK 539

Query: 846  IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL 905
             + ++ L +SL      + + +     T K P+K+F  G  +   V+A+       R  +
Sbjct: 540  KLTDSGLFVSLSRSIDGVVWPNHYADITLKHPEKRFKPGAGIKCKVLAV----DVYRKRI 595

Query: 906  LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 965
             L A      S+     K      G +  A I ++    L ++F       +   E++D 
Sbjct: 596  SLTAKKTLLDSNLPILSKIDDAKPGFVTHAVIFKVYGNHLLVEFYNNLKAIVPAKEISDI 655

Query: 966  KSNVVENLFSNFKIGQTVTARIIA-KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1024
              N    L  +F IG+ V  RII+  + +  +  S    L  K     VS+I +      
Sbjct: 656  PIN---KLSDSFPIGRVVRTRIISVDTEQGRIVASIRQALGNKDP---VSDISA------ 703

Query: 1025 CDVSIGQRVTGYVYKVDNEWALLTIS-RHLKAQLFILDSA-YEPSELQEFQRRFHIGKAV 1082
              V IG  V G + ++  + AL+ +    ++A L + + A +    L E   +  +G  +
Sbjct: 704  --VEIGNIVKGSISEIHKDNALIILQPTQIRALLSLKNLANFRQISLGELLVKLKVGDEL 761

Query: 1083 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1142
               V+      K + +V    +     K   +S D+++     G IVGGR+++       
Sbjct: 762  DELVVVTRNPDKGVVIVANTPKKVPLLKGSSVSIDSLKV----GQIVGGRVTRHTRHSA- 816

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
             ++++ P + G +H T++ +         YD G   P         ++  ++EI R+   
Sbjct: 817  -LIKVTPQIGGTLHPTDISD--------DYDMGLVLP----PVDSILRAAIIEIDRSKN- 862

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
               + LS R S     ST        VD    H   I D+     V+G +K+V   G F+
Sbjct: 863  --QLRLSTRHSKMYPESTKKI-----VDQEIIH---IFDIHVGDTVRGSIKSVADHGLFV 912

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
             + R +DA+V +  L D +VE  +  F   ++V G +LSV+  +++VE+TLK+ D  T +
Sbjct: 913  TIGRDIDARVQIRELFDDFVEDWKARFQEKQIVKGLILSVDLQTRKVEMTLKSGDLSTRN 972

Query: 1323 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE---TI 1379
             S +  L++L VG  V G +KR+E YGLFI I+ + L GLCH S+LS+     +      
Sbjct: 973  GSSVG-LADLKVGQKVDGLVKRIEDYGLFINIDRSKLNGLCHKSQLSDSQGAGVSFALNS 1031

Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSS- 1438
            +  G++VK  I+ +DK   RISL +K S F N+ D        +++E I E     ++  
Sbjct: 1032 FHEGDRVKAVIIGIDKA--RISLSLKPSLF-NEED---FQEGADTNEPIPEPSGVIKNDN 1085

Query: 1439 ---------------LLENSSVAVQDMDMESEDGGSLVLA----QIESRASVPPLEVNLD 1479
                             E     V D+D++     S  ++    ++ S A +P L     
Sbjct: 1086 VETSDDDEDEEVDISDSEGEGDDVMDVDIDQPLAHSRPVSAQKPRVVSTAPIPSLA---- 1141

Query: 1480 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD------ 1533
                 +  G   + G        D ++       E +E  +       + +E D      
Sbjct: 1142 -----LSGGFQWSFGEQQLGDDYDAESPSSESDLEGDEYGKRKTKRRRKAIEHDLTAEMH 1196

Query: 1534 --APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1591
              +P +  +FERL+  SPNSS++WI+YM+F L +++VEK+R I  RA++TIN REE EKL
Sbjct: 1197 TKSPESNADFERLLLGSPNSSYLWIQYMSFQLQLSEVEKSREIGRRAIETINFREEQEKL 1256

Query: 1592 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1651
            N+W+A  NLEN YG    E++   F++A +  D K VHL L  +++++++ + A+E   +
Sbjct: 1257 NVWIALLNLENVYGT--LESLETTFKQAARANDSKTVHLRLASIFDQSDKLEKAEEQFNR 1314

Query: 1652 MIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710
              KKF  S KVW    +  LK+   E  + ++ R+LLSL + KH+K IS+ A LE+K G 
Sbjct: 1315 TCKKFGQSSKVWTLFSEYYLKRGNMEESRKLLPRSLLSLDKRKHLKTISRFAQLEYKYGD 1374

Query: 1711 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1770
             +RGR++FEGI+  +PKR DLWSIY+D E    ++  +R LFER ++L +   K K  FK
Sbjct: 1375 PERGRTLFEGIVDSHPKRWDLWSIYMDMEGVQKNIQGLRNLFERVLTLHMTSHKAKSFFK 1434

Query: 1771 KYLEYEKSVGEEERIEYVKQKAMEYV 1796
            K+LE EK +G+EE +  VK KA+E+ 
Sbjct: 1435 KWLELEKRIGDEEGVSDVKTKAVEWT 1460



 Score =  180 bits (456), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 155/543 (28%), Positives = 251/543 (46%), Gaps = 49/543 (9%)

Query: 49  LPTIFHVGQLVSCIV-------------LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 95
           L  IF VGQ V  +V             L    D+     R++ LSL    +  G+    
Sbjct: 194 LSDIFRVGQYVRAVVSAIHAPGSSEASSLGKSRDETSKASRRVELSLVPERVNAGVQKAD 253

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNN--LAENSGIDVKPGLLLQGVVRSI 153
           ++ G  +TA VKS+EDHGYIL  G+    GFL   +  +  +  I +  G LL   V  +
Sbjct: 254 LKNGFTMTAAVKSVEDHGYILDLGISGVEGFLAFKDTKMRPSGSIALDVGRLLDVSVTKL 313

Query: 154 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 213
               +   +++D    S     ++   S+  ++PG +V + + +I   G+ L  L +F G
Sbjct: 314 SANGRTCNVTTDQALFSSSYVTEMS--SVTSVLPGALVQSLITAIHPTGLNLQVLGFFEG 371

Query: 214 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA-VGLTLNPYLLHNRAP----- 267
           TVD  HL+           Y   KKV ARIL+   +S     L L  +L +  AP     
Sbjct: 372 TVDPVHLKKG------GKAYQVGKKVRARILYEYSSSPPRFALALVDHLTNLSAPCIKSK 425

Query: 268 --PSHVK-------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 318
             P+  K       +G I + +KV+RV+   G+++++         +V IS ++E+ V  
Sbjct: 426 ELPAETKSIQEAFPLGTIIESAKVLRVETERGIIVEVQP---GVEGFVHISHLSEDHVPS 482

Query: 319 LEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 376
           L     +K G+  R R+ G+   +GL     K S  E      SDV+ G V+KG +  + 
Sbjct: 483 LSSTGPWKPGTLHRARVTGYFSFDGLLQLSFKPSIIEQKFLQVSDVEVGEVIKGTIKKLT 542

Query: 377 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKT 434
             G  V     +  +    H ++  +  P K+FK GA +  +VL V    KRI++T KKT
Sbjct: 543 DSGLFVSLSRSIDGVVWPNHYADITLKHPEKRFKPGAGIKCKVLAVDVYRKRISLTAKKT 602

Query: 435 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 494
           L+ S L ILS   +A    +TH  I K+  +   V FYN ++   P  E+   P  + S 
Sbjct: 603 LLDSNLPILSKIDDAKPGFVTHAVIFKVYGNHLLVEFYNNLKAIVPAKEISDIPINKLSD 662

Query: 495 MYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSG-VVDVVTPNA 550
            + +G+VV+ RI+S      RI  S    +     VS+   V++G++V G + ++   NA
Sbjct: 663 SFPIGRVVRTRIISVDTEQGRIVASIRQALGNKDPVSDISAVEIGNIVKGSISEIHKDNA 722

Query: 551 VVV 553
           +++
Sbjct: 723 LII 725


>gi|452821025|gb|EME28060.1| rRNA biogenesis protein rrp5 [Galdieria sulphuraria]
          Length = 1832

 Score =  340 bits (873), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 282/998 (28%), Positives = 512/998 (51%), Gaps = 135/998 (13%)

Query: 840  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS- 898
            +  IV ++KE YL++ +P+ N+ + Y +  D   +           SVI +V ++   + 
Sbjct: 933  LRGIVLLIKEEYLIMRIPQLNNCLVYLTSWDPRVRA--------NLSVIYSVDSVIEGTV 984

Query: 899  --TAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL---KFGIGF 953
               + RL +L+   +  E     + +   +  VG  V   I  I  + L L   ++ +  
Sbjct: 985  YYCSERLTMLVAMDANDE-----KKRMIENVQVGDHVIGRIVRISTVHLHLFIPRYSV-- 1037

Query: 954  HGRIHITEVNDD--KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1011
            +GRIH +++  +  K  ++  L  +F+IGQ V A+IIAK +    KK  + +L++  + +
Sbjct: 1038 YGRIHCSQIMSEPGKDTLISPL-EHFEIGQQVEAKIIAKDHS---KKYQILDLTLNKNDV 1093

Query: 1012 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPS 1067
               E   K L +  ++S  Q +TG+V+K+  +  L++ S      +K   F  +     S
Sbjct: 1094 VTME---KNLVDWSNLSCRQCLTGFVHKIMTDKVLISFSSKVIGVMKRWGFTQNEQLLSS 1150

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
              ++       G+ +   ++ +N+ +KLL + L                  +   +H GD
Sbjct: 1151 --KQIFSSLRTGQPLHCTIIRLNQSRKLLEVAL----------------SELVKPVHVGD 1192

Query: 1128 IVGGRISKILSG------VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
             V   + ++L G      +   V        G + FT++ +         +D      +S
Sbjct: 1193 SVVAHVGQVLYGAEFCLELPKWVEWSLSTCRGVLSFTDIDD--------NFDRAT-AKIS 1243

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK-HLEKIE 1240
                 +++K  ++E S           S++     + S  +SD      TP     + + 
Sbjct: 1244 HIKSRKWIKGIIIECS-----------SVKEKPIAIVSLRNSDAHPTQSTPKDIRWKNLM 1292

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            DL    +V+G++++ + KGCF+ LS  +  +V+L NLSDG+V++ E+ FP+G+LV  +V+
Sbjct: 1293 DLKAGQLVRGFIRHHSLKGCFVQLSSSIIGRVMLRNLSDGFVQNVEETFPLGQLVTAKVI 1352

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
             ++  + +VE++L+ SD   + +  I   S L  G  + G +K ++ +G+F+++    + 
Sbjct: 1353 DIQ--NGQVELSLRESD--LSDRQTI--YSVLQKGLRLQGTVKNIQPFGIFVSL-GLGVT 1405

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1420
            GLCH+S L +      ++ YR GE + V++  VD+EK RI+L        +  D ++ + 
Sbjct: 1406 GLCHLSTLEK------QSQYRIGEVIWVQVDNVDREKGRINL--------HPLDPIKENG 1451

Query: 1421 EEESDEAIEEVGSYNRSSLLENSSVAVQDMDM---------ESEDGGS--LVLAQIESRA 1469
               +   +  + S +++S L++S +    +D          ESE  GS   VL   ES  
Sbjct: 1452 RIGTLRQLVGIDSTSQNSSLQHSYIDSVSVDANRDVVESSDESEGNGSDCEVLQVSES-- 1509

Query: 1470 SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1529
                    L DE   ++N  SQN+ + +    +  ++    +  E+ ER  +     ER 
Sbjct: 1510 ------FQLQDEIL-LENDDSQNRANKNNVAKMVVESTEQQQDDERLERYSDEEIELERS 1562

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L++  P+  ++FER V +SP+ S +WI+YMA+ +SM  ++KA+  A RAL+ I++R ++E
Sbjct: 1563 LKE--PQNEEDFERHVLASPDDSSIWIRYMAYFISMGQIQKAKETARRALEKISVRNQDE 1620

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLNIW+AY NLE +YG+  E  +  + + A    + +K+ L      ++T + K ++E+ 
Sbjct: 1621 KLNIWIAYLNLEAQYGD--ESHLASILEEACSRTNAEKLLLNFAKSMQKTRKEK-SEEIY 1677

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQQEGV---QAVVQRALLSLPRHKHIKFISQTAILEF 1706
             +  ++FKHS +VW+ +V     ++++ +   + +++RALLSLP+  HI+ I++  +LE+
Sbjct: 1678 LRACRQFKHSPEVWM-QVGTFYYEKKKNISEGRKILERALLSLPKQDHIQVITKFTVLEY 1736

Query: 1707 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV----DLIRGLFERAISLSLPP 1762
            K G  +R R++FE ++S +PKR D+W++YLD E +  D     + +R LFERA SLSL  
Sbjct: 1737 KFGSIERARTIFENMISSFPKRLDIWNVYLDMEWKQVDTEEDKERLRLLFERACSLSLSS 1796

Query: 1763 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
            KKMKFLFKKYLE+EK++G     E VK  A EYVE  L
Sbjct: 1797 KKMKFLFKKYLEFEKTIGGNP--ERVKTLAREYVEKQL 1832



 Score = 94.4 bits (233), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 146/581 (25%), Positives = 250/581 (43%), Gaps = 91/581 (15%)

Query: 98  EGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 155
           +G ++   +   E++GY + FGL S  + GFLP   L E     +K G L+  +V     
Sbjct: 201 KGCLVYGMIYEREEYGYRVTFGLESIQYDGFLP---LEETESQILKSGSLIXQLVCD--- 254

Query: 156 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 215
             K+ Y S  P     CV   L+       + G ++  + +    +  + S +T F  ++
Sbjct: 255 -SKISYQSKWP---FGCVFPGLR-------MEGQVLQKKWKGSWTHIKLASNMTGFVYSM 303

Query: 216 DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP---PSHVK 272
           +   ++ +F              ++ R++FVD   R + L+    L+    P   P+  K
Sbjct: 304 ET--IRESF--------------LDLRVIFVDVGKRVIYLSSVESLVGFLEPAKLPNAWK 347

Query: 273 VGDIYDQSKVVRVDRGL----GLLL------DIPSTPVSTPAYVTIS-DVAEEEVRKLEK 321
           +G+I    K V V+  L    G+LL       I   P S  A   IS D A   +  L+ 
Sbjct: 348 LGNIL---KNVIVEGHLSSPKGILLRHSESNTILFAPNSQLADSDISADAALSSLPSLQ- 403

Query: 322 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 381
                S V  RI+ F  L+G     +K S     + +  ++ PGM V+ K+ +V   G +
Sbjct: 404 -----SIVCCRIVAFSPLDGTIIVSMKPSILSKTIVSFDELHPGMPVQCKIESVRENGCL 458

Query: 382 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 439
                 ++A  P  H  +    +   KF  G ++   VL +   S R T+T KK  + ++
Sbjct: 459 CIVEDKIRAWIPQMHFGDTVGARLKNKFVAGKKVKGCVLSIFQDSHRCTITTKKKFIDNQ 518

Query: 440 LAILSSYAEATDRLITHGWITKIE---KHGCFVRFYNGVQGFAPRSELGLD--PGCEP-S 493
             +++S  +A   + +  +    +     G  V F+ GV+GF P S +GL+  P  E  S
Sbjct: 519 YPVIASIQDAKSNIGSAAYCCVYQVSSSRGLQVEFFQGVKGFLPVSYMGLEKLPSLEWLS 578

Query: 494 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD---LVKLGSLVSGVVDVVTPNA 550
             Y VG+ +K  I+S    S RI +S  +    +  DD   +V  G+    +V +   N 
Sbjct: 579 ENYPVGKTLKVWILSVHEESHRIIVS--LSRDVIMNDDSSAIVTYGA----IVGIEYGNL 632

Query: 551 VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-------FDQLLVLDNE-SSN 602
           +V   +     +  +P EHL+D    +  + S++   +E        +Q+++L +  SSN
Sbjct: 633 IVEVCLLDSRKRALLPKEHLSDFAYLSERIYSLLVSYFESNSSSLPLEQVVILRSRISSN 692

Query: 603 ---LLLSAKYSLINSAQQLPS-----DASHIHPNSVVHGYV 635
               L+S K SLI  A   PS       S    N ++ G+V
Sbjct: 693 DCRALVSLKRSLIQFALTYPSLSSDRICSEWKANQMLPGFV 733



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 155/363 (42%), Gaps = 36/363 (9%)

Query: 381  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL 440
            I+  PG    + PL H   FEI +     +V A+++ +    K + + +T  K  V +  
Sbjct: 1046 IMSEPGKDTLISPLEH---FEIGQ-----QVEAKIIAKDHSKKYQILDLTLNKNDVVTME 1097

Query: 441  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS----SMY 496
              L  ++  + R    G++ KI      + F + V G   R     +     S    S  
Sbjct: 1098 KNLVDWSNLSCRQCLTGFVHKIMTDKVLISFSSKVIGVMKRWGFTQNEQLLSSKQIFSSL 1157

Query: 497  HVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 553
              GQ + C I+  +  SR+   + LS ++KP  V +  +  +G ++ G    +     V 
Sbjct: 1158 RTGQPLHCTIIR-LNQSRKLLEVALSELVKPVHVGDSVVAHVGQVLYGAEFCLELPKWVE 1216

Query: 554  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL------LLSA 607
            + ++    +G +    + D+ + AT   S IK       +++   E S++      ++S 
Sbjct: 1217 WSLST--CRGVLSFTDIDDNFDRATAKISHIKSRKWIKGIII---ECSSVKEKPIAIVSL 1271

Query: 608  KYSLINSAQQLPSDASH-----IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 662
            + S  +  Q  P D        +    +V G++ +    GCFV+    + G        D
Sbjct: 1272 RNSDAHPTQSTPKDIRWKNLMDLKAGQLVRGFIRHHSLKGCFVQLSSSIIGRVMLRNLSD 1331

Query: 663  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--STDASFMQEHFLLEEKIA 720
            G   ++ +T+ +GQ V + ++D+  + G++ LSL++S  S   T  S +Q+   L+  + 
Sbjct: 1332 GFVQNVEETFPLGQLVTAKVIDI--QNGQVELSLRESDLSDRQTIYSVLQKGLRLQGTVK 1389

Query: 721  MLQ 723
             +Q
Sbjct: 1390 NIQ 1392



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 16/254 (6%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K +   ++L P M VQ  +++V   GC  ++  K+ A +   +  D      + +F  GK
Sbjct: 431  KTIVSFDELHPGMPVQCKIESVRENGCLCIVEDKIRAWIPQMHFGDTVGARLKNKFVAGK 490

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRV-ESYGL 1350
             V G VLS+   S R  +T K    D++    + I +  + ++G      + +V  S GL
Sbjct: 491  KVKGCVLSIFQDSHRCTITTKKKFIDNQYPVIASIQDAKS-NIGSAAYCCVYQVSSSRGL 549

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             +      + G   VS +  + + ++E +   Y  G+ +KV IL V +E  RI + +   
Sbjct: 550  QVEFFQ-GVKGFLPVSYMGLEKLPSLEWLSENYPVGKTLKVWILSVHEESHRIIVSLSRD 608

Query: 1408 YFKNDADNLQMSSEE----ESDEAIEEVGSYN--RSSLLENSSVAVQDMDMESEDGGSLV 1461
               ND  +  ++       E    I EV   +  + +LL    ++  D    SE   SL+
Sbjct: 609  VIMNDDSSAIVTYGAIVGIEYGNLIVEVCLLDSRKRALLPKEHLS--DFAYLSERIYSLL 666

Query: 1462 LAQIESRASVPPLE 1475
            ++  ES +S  PLE
Sbjct: 667  VSYFESNSSSLPLE 680



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 20/244 (8%)

Query: 478 FAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---- 530
           FAP S+L    +      SS+  +  +V CRI++  P    I +S  MKP+ +S+     
Sbjct: 379 FAPNSQLADSDISADAALSSLPSLQSIVCCRIVAFSPLDGTIIVS--MKPSILSKTIVSF 436

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 590
           D +  G  V   ++ V  N  +  V  K   +  IP  H  D +     +K+    G + 
Sbjct: 437 DELHPGMPVQCKIESVRENGCLCIVEDK--IRAWIPQMHFGDTV--GARLKNKFVAGKKV 492

Query: 591 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI---IETGCFVR 646
              +L +  +S    ++ K   I++   + +       N     Y C        G  V 
Sbjct: 493 KGCVLSIFQDSHRCTITTKKKFIDNQYPVIASIQDAKSNIGSAAYCCVYQVSSSRGLQVE 552

Query: 647 FLGRLTGFAPRSKAVDGQRADL---SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           F   + GF P S     +   L   S+ Y VG++++  IL V+ E+ RI +SL +    +
Sbjct: 553 FFQGVKGFLPVSYMGLEKLPSLEWLSENYPVGKTLKVWILSVHEESHRIIVSLSRDVIMN 612

Query: 704 TDAS 707
            D+S
Sbjct: 613 DDSS 616



 Score = 40.8 bits (94), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 140/365 (38%), Gaps = 64/365 (17%)

Query: 72  EIGKRKIWLSLRLSL--------LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 123
           ++GKR I+LS   SL        L     L  + + +++  ++ S    G +L     + 
Sbjct: 319 DVGKRVIYLSSVESLVGFLEPAKLPNAWKLGNILKNVIVEGHLSS--PKGILLRHSESNT 376

Query: 124 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVY--------LSSDPDTVSKCVTK 175
             F P + LA+ S I     L     ++SI   R V +        +S  P  +SK +  
Sbjct: 377 ILFAPNSQLAD-SDISADAALSSLPSLQSIVCCRIVAFSPLDGTIIVSMKPSILSKTI-- 433

Query: 176 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 235
               +S D L PGM V  +++S+ ENG +          +   H  +T      KN +  
Sbjct: 434 ----VSFDELHPGMPVQCKIESVRENGCLCIVEDKIRAWIPQMHFGDTV-GARLKNKFVA 488

Query: 236 HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSK---------VVRVD 286
            KKV   +L +   S    +T     + N+ P     +  I D            V +V 
Sbjct: 489 GKKVKGCVLSIFQDSHRCTITTKKKFIDNQYPV----IASIQDAKSNIGSAAYCCVYQVS 544

Query: 287 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE---KKYKEGSCVRVRILGF-----RH 338
              GL ++          ++ +S +  E++  LE   + Y  G  ++V IL       R 
Sbjct: 545 SSRGLQVEFFQ---GVKGFLPVSYMGLEKLPSLEWLSENYPVGKTLKVWILSVHEESHRI 601

Query: 339 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ---FPGGVKALCPLP 395
           +  L+  ++            +D    +V  G ++ ++    IV+        +AL P  
Sbjct: 602 IVSLSRDVI-----------MNDDSSAIVTYGAIVGIEYGNLIVEVCLLDSRKRALLPKE 650

Query: 396 HMSEF 400
           H+S+F
Sbjct: 651 HLSDF 655


>gi|393244266|gb|EJD51778.1| nucleic acid-binding protein [Auricularia delicata TFB-10046 SS5]
          Length = 1472

 Score =  338 bits (868), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 225/686 (32%), Positives = 371/686 (54%), Gaps = 57/686 (8%)

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            G  G VV+I   + G VH  +     V+D L    + Q  P+     G   +  VL + +
Sbjct: 818  GRKGAVVRISSKISGSVHALD-----VADELP--PKAQLPPV-----GTMTQFAVLAVDK 865

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
              +     +L+L S    +S  ++ ++        + +  + DL     ++G++K+V   
Sbjct: 866  DRK-----QLTLSSRPSNVSPESAGEVKD------REINSLGDLKVGQRLRGFIKSVADH 914

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ + R LDA+V +  L D +V+  + +F +   V G+++SV+    +VE++L++ D 
Sbjct: 915  GLFVNIGRNLDARVQIKELFDDFVKDWKSKFNVDDRVHGQIISVDVEKNQVEMSLRSGD- 973

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
            R  +Q E   L++   G  V   +KR E+YG+F+ IE T + GLCH S +S+    ++E 
Sbjct: 974  RKVAQVETKGLADFAKGQKVDAIVKRTETYGIFLQIEGTKISGLCHKSNISDTKDADVER 1033

Query: 1379 I---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ--------------MSSE 1421
                ++ G++VK  IL +D EKRRI  G+K S+F  DA++                +S  
Sbjct: 1034 AIKNFKEGDRVKAMILSIDLEKRRIDFGLKPSFF--DAEDFAPPASDDEDEDEDEAVSEA 1091

Query: 1422 EESDEAI-----EEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV 1476
             + DEA      +E  + N +S  E+    V  MD E         A I S +++     
Sbjct: 1092 GDQDEAATGSEADEAAAVNGASGSEDDDDEVVRMDGEDVVMEDTPAAPIASTSALQLGGF 1151

Query: 1477 NLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPR 1536
            N      D  +G +     +DE    D  + +  KKK K E E + R AE   + K AP 
Sbjct: 1152 NWTGRTADFADG-ADAPSSSDEGSDAD-PDFKRKKKKRKHEIEYD-RTAE---MHKRAPE 1205

Query: 1537 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1596
            +  +FERL+ SSPNSS++W++YM+F L +++ EKAR +  RAL+ IN REE EKLN+W+A
Sbjct: 1206 STADFERLLLSSPNSSYLWVQYMSFQLQLSETEKAREVGRRALKVINFREEQEKLNVWIA 1265

Query: 1597 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1656
              NLEN +G P  E++  +F+ A ++ D K +HL +  ++++T + + A+E   K  KKF
Sbjct: 1266 LLNLENLHGTP--ESLAGLFKDAARHNDSKTIHLRMAAIFDQTGKLEQAEEQFQKTCKKF 1323

Query: 1657 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1715
              S KVW    +  L+  + E  + ++ R + SL + KH+K IS+ A LE+K G  +RGR
Sbjct: 1324 GKSSKVWTEFGEFYLRHGKPEDARKLLSRCIQSLEKRKHLKTISKFAQLEYKLGDPERGR 1383

Query: 1716 SMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1775
            ++FEGI++ +PKR DLW +YLD E    ++  +R LF+R +S+ +   K K  FKK+L+ 
Sbjct: 1384 TIFEGIVNSHPKRFDLWFVYLDMEAGQKNIGALRNLFDRVLSMKMSNHKAKAFFKKWLDL 1443

Query: 1776 EKSVGEEERIEYVKQKAMEYVESTLA 1801
            EK +G+E+    VK+KA+++ +   A
Sbjct: 1444 EKRIGDEQGQNAVKEKAIQWTQKATA 1469



 Score =  181 bits (460), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 188/702 (26%), Positives = 317/702 (45%), Gaps = 61/702 (8%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEI-----------GKRKIWLSLRLSLLYKGLSLETVQ 97
           LP IF VGQ V+ +V  +      +              ++ LSL    + +G+S   + 
Sbjct: 200 LPDIFRVGQYVTAVVSTVHAAGTSVDPMLKRPDVDRSSHRVELSLVPEEVNEGVSKRDLG 259

Query: 98  EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS--GIDVKP---GLLLQGVVRS 152
            G +L + +KS+EDHGY+L+FG+P  TGFL   + A+N   G++ K    G+ LQ  +  
Sbjct: 260 PGFILASTIKSVEDHGYVLNFGIPEATGFLSFKD-AKNGQHGLNAKKLPIGMALQVCITK 318

Query: 153 IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
                ++  +S +P TVS  +  ++   S+  ++PG +V   + ++L  G+ L  + +F 
Sbjct: 319 KSDNGRIYTVSIEPATVSAGLLSEVS--SVSSVLPGTLVDALITAVLPTGLNLQLMGFFE 376

Query: 213 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYL--LHNRAPP 268
           GT+D +HL       +    +    K+ AR+++     + +   L+  P++  LH     
Sbjct: 377 GTIDQYHLG----LGDVVGRFKLGDKIKARVIYEVTHSSPKRFALSALPHVVSLHGATAG 432

Query: 269 SHV-----KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 322
           S        +G + D  KVVRV+   GLL  I        A+V IS V++E V  L    
Sbjct: 433 SSALYDAFPMGTVLDAIKVVRVEPERGLLCQIQD---GIAAFVHISQVSDEHVNTLSATA 489

Query: 323 --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 380
             +K G+  R R+ GF  L+GL    L+ S  +      SDV  G  +KG V  +     
Sbjct: 490 GTWKVGTVHRARVTGFFGLDGLVQVSLRQSILDQKFMHVSDVTVGERMKGTVKRLADNAL 549

Query: 381 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS 438
            V   G V A+    H ++  +  P K+FK G  +  RVL V  +  R+ +T KKTLV+S
Sbjct: 550 FVSVSGSVDAVVWPNHYADITLRHPEKRFKAGGTVKGRVLVVDPERNRLCLTLKKTLVES 609

Query: 439 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
            L I+S   EAT   ITH  + K    G  V F+N ++ F P+ E+  D   + +  + +
Sbjct: 610 DLPIVSKIEEATPGTITHAVVFKNLDKGLLVEFFNNLRAFVPQREMN-DSAVQSADDFPI 668

Query: 499 GQVVKCRIM------SSIPAS-RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV 551
           G+VV+ +I+      S I AS R+  L+F         DD    G++V G V  +     
Sbjct: 669 GKVVRVKILDVNAETSKIVASIRQGALNFQSAIDISGVDD----GAVVHGTVAALHKEHA 724

Query: 552 VVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYEFDQLLVLDNESSNLLLSAKYS 610
           ++ ++     +  +   +LA H        K+ +K G    +L V+   +    +   Y 
Sbjct: 725 MLSLVPSKV-RALLSFANLAKHRNLPLAQAKAALKVGEGLKELTVVGRNAEKGFVLVGYK 783

Query: 611 LINSAQQLPSDAS------HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
               A++L   A+       +    V+ G V +    G  VR   +++G        D +
Sbjct: 784 DEKRARRLSLSANSGLAIDKVTVGQVMPGLVVSHGRKGAVVRISSKISGSVHALDVAD-E 842

Query: 665 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               ++   VG   +  +L V+ +  ++TLS + S  S   A
Sbjct: 843 LPPKAQLPPVGTMTQFAVLAVDKDRKQLTLSSRPSNVSPESA 884



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 22/267 (8%)

Query: 83   RLSL-LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGID 139
            RLSL    GL+++ V  G V+   V S    G ++       +G +   ++A+       
Sbjct: 790  RLSLSANSGLAIDKVTVGQVMPGLVVSHGRKGAVVRIS-SKISGSVHALDVADELPPKAQ 848

Query: 140  VKP-GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI----DLLVPGMMVSTR 194
            + P G + Q  V ++D+ RK + LSS P  VS     ++K   I    DL V G  +   
Sbjct: 849  LPPVGTMTQFAVLAVDKDRKQLTLSSRPSNVSPESAGEVKDREINSLGDLKV-GQRLRGF 907

Query: 195  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 254
            ++S+ ++G+ ++        V I  L + F   +WK+ +N   +V+ +I+ VD     V 
Sbjct: 908  IKSVADHGLFVNIGRNLDARVQIKELFDDF-VKDWKSKFNVDDRVHGQIISVDVEKNQVE 966

Query: 255  LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD------RGLGLLLDIPSTPVSTPAYVT- 307
            ++L           + V+   + D +K  +VD         G+ L I  T +S   + + 
Sbjct: 967  MSLR----SGDRKVAQVETKGLADFAKGQKVDAIVKRTETYGIFLQIEGTKISGLCHKSN 1022

Query: 308  ISDVAEEEVRKLEKKYKEGSCVRVRIL 334
            ISD  + +V +  K +KEG  V+  IL
Sbjct: 1023 ISDTKDADVERAIKNFKEGDRVKAMIL 1049



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 926  SYDVGSLVQA-EITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 983
            ++ +G+++ A ++  ++P   L  +   G    +HI++V+D+  N +      +K+G   
Sbjct: 439  AFPMGTVLDAIKVVRVEPERGLLCQIQDGIAAFVHISQVSDEHVNTLSATAGTWKVGTVH 498

Query: 984  TARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1043
             AR+             L ++S++ S+L       +      DV++G+R+ G V ++ + 
Sbjct: 499  RARVTGF-----FGLDGLVQVSLRQSIL------DQKFMHVSDVTVGERMKGTVKRLADN 547

Query: 1044 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1101
               +++S  + A   +  + Y    L+  ++RF  G  V G VL ++ E+  L L L+
Sbjct: 548  ALFVSVSGSVDA--VVWPNHYADITLRHPEKRFKAGGTVKGRVLVVDPERNRLCLTLK 603



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 116/553 (20%), Positives = 214/553 (38%), Gaps = 83/553 (15%)

Query: 301  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVF 357
            S  A V  +  A+  +R  EK++K G  V+ R+L            LK +  E    +V 
Sbjct: 556  SVDAVVWPNHYADITLRHPEKRFKAGGTVKGRVLVVDPERNRLCLTLKKTLVESDLPIVS 615

Query: 358  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
               +  PG +    V      G +V+F   ++A  P   M++   V+    F +G  +  
Sbjct: 616  KIEEATPGTITHAVVFKNLDKGLLVEFFNNLRAFVPQREMND-SAVQSADDFPIGKVVRV 674

Query: 418  RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY--- 472
            ++L V ++  +I  + ++  +  + AI  S  +  D  + HG +  + K    +      
Sbjct: 675  KILDVNAETSKIVASIRQGALNFQSAIDISGVD--DGAVVHGTVAALHKEHAMLSLVPSK 732

Query: 473  -NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA--------------SRRIN 517
               +  FA  ++    P  +  +   VG+ +K   +    A              +RR++
Sbjct: 733  VRALLSFANLAKHRNLPLAQAKAALKVGEGLKELTVVGRNAEKGFVLVGYKDEKRARRLS 792

Query: 518  LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 577
            LS           D V +G ++ G+V        VV + +K    G++    +AD L   
Sbjct: 793  LS----ANSGLAIDKVTVGQVMPGLVVSHGRKGAVVRISSK--ISGSVHALDVADELPP- 845

Query: 578  TVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV----- 630
               K+ + P     Q  VL  D +   L LS++ S ++     P  A  +    +     
Sbjct: 846  ---KAQLPPVGTMTQFAVLAVDKDRKQLTLSSRPSNVS-----PESAGEVKDREINSLGD 897

Query: 631  ------VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
                  + G++ ++ + G FV     L       +  D    D    + V   V   I+ 
Sbjct: 898  LKVGQRLRGFIKSVADHGLFVNIGRNLDARVQIKELFDDFVKDWKSKFNVDDRVHGQIIS 957

Query: 685  VNSETGRITLSLKQSCCSSTDASFMQ------EHFLLEEKI-AMLQSSKHNGSELKWVEG 737
            V+ E  ++ +SL+     S D    Q        F   +K+ A+++ ++  G  L+    
Sbjct: 958  VDVEKNQVEMSLR-----SGDRKVAQVETKGLADFAKGQKVDAIVKRTETYGIFLQ---- 1008

Query: 738  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 797
             I G+ I G  H+SN     +S  + +DV   I + +        G  ++A IL +   +
Sbjct: 1009 -IEGTKISGLCHKSN-----ISDTKDADVERAIKNFK-------EGDRVKAMILSIDLEK 1055

Query: 798  RLVDLSLKTVFID 810
            R +D  LK  F D
Sbjct: 1056 RRIDFGLKPSFFD 1068


>gi|302698227|ref|XP_003038792.1| hypothetical protein SCHCODRAFT_64843 [Schizophyllum commune H4-8]
 gi|300112489|gb|EFJ03890.1| hypothetical protein SCHCODRAFT_64843 [Schizophyllum commune H4-8]
          Length = 1461

 Score =  338 bits (868), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 232/694 (33%), Positives = 372/694 (53%), Gaps = 55/694 (7%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            G +V GR+++ +    G +V++   + G +H         SD    ++  +  PL   D 
Sbjct: 796  GQVVTGRVTRHVQK--GALVKVTAKVRGILH--------PSDVADDFNHVKGQPLPAVD- 844

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLS 1243
               VK  ++ I R  +     +L L        ST  S +S   D     K + +I DL 
Sbjct: 845  -AVVKAAIVGIDRENK-----QLIL--------STRPSRVSPQPDRSVRDKEIGEISDLH 890

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
                V+G++K+V   G F+ + R LDA+V +  L D YV+  +  F + ++V GR+L V+
Sbjct: 891  VGQTVRGFIKSVADHGLFVTVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQVD 950

Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
              SK++E+T +   S  A +S    +++L  G +V G + R+E YGL I I+ + L GLC
Sbjct: 951  AESKKIEMTFR---SEEALKSSTLTIADLKEGQVVDGTVNRIEPYGLLIQIQRSKLKGLC 1007

Query: 1364 HVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1420
              +E +++   +++     +RAG+KVK  ILK+    RRI+L +K S    DA  ++   
Sbjct: 1008 RKTEFTDNKDADVDAALEGFRAGDKVKACILKL--ADRRIALSLKPSRL-GDAGFVEDEE 1064

Query: 1421 EEESDEA-----IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVP--- 1472
             E+ DE      I +V +       E      Q +D ESEDG +    + +  A      
Sbjct: 1065 AEDDDEEEQEGIIRDVDAETSDEEDEEMPGQEQAVDDESEDGDAPEHDEDDDDADEDAIM 1124

Query: 1473 ---PLEVNLDDEQP-DMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEER 1528
               P EV     Q  ++  G   N G  +     +  +   ++ ++ E +++  R   E+
Sbjct: 1125 IDIPAEVTPAQSQSLELLGGFQWNTGAAEPESDAESSDGSDSETEQPERKKRNKRKEIEK 1184

Query: 1529 LLEKD----APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
             L  D    AP +  +FERL+  SPNSS++WI+YM+F L + +++KAR++A RAL TIN 
Sbjct: 1185 DLTADMHTKAPESTADFERLLLGSPNSSYLWIQYMSFQLQLGEMDKARALARRALSTINF 1244

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1644
            REENEKLN+W+A  NLEN YG   ++++   F+ A +  D K VHL L  ++E++ +   
Sbjct: 1245 REENEKLNVWIALLNLENAYGT--DDSLDATFKEAARANDSKTVHLRLAAIFEQSGKIDK 1302

Query: 1645 ADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAI 1703
             +E   K  KKF HS KVW    +  L++ + E  + ++ RAL SL + KHIK IS+ A 
Sbjct: 1303 TEEQFKKTAKKFGHSSKVWTLYGEFFLRRGEVEEARKLLPRALQSLEKRKHIKTISKFAQ 1362

Query: 1704 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1763
            LE+K    +RGR++FEGI+S +PKR D+WSIY+D E    ++  +R LF R +++ +   
Sbjct: 1363 LEYKMADPERGRTLFEGIVSIHPKRWDIWSIYMDMEATQSNIQSLRNLFNRVLAIKMTSH 1422

Query: 1764 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            K K  FKK+L+ E  +G+EE  E VK KA+E+ +
Sbjct: 1423 KAKSFFKKWLDLEHRLGDEEGAEQVKAKAIEWTQ 1456



 Score =  209 bits (532), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 196/764 (25%), Positives = 338/764 (44%), Gaps = 77/764 (10%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPILDNEIEANEDNLLPT 51
           K+ G +  V    L++ LP  L G          L  A DA+D    ++ +A     +P 
Sbjct: 122 KILGQIISVQPLALIVSLPNQLLGHVPITNISTQLTAALDAMDVDESDDEDAPAQTAVPD 181

Query: 52  ---IFHVGQLVSCIVLQL----DDDKKEIGK---------RKIWLSLRLSLLYKGLSLET 95
              IFH GQ V  +V  +      D   IG+         R++ LSL    +  G+    
Sbjct: 182 LDDIFHPGQYVRAVVATVHAPGTTDLSGIGRSRDEVVRASRRVELSLVPGKVNAGVQKGD 241

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQGVVR 151
           ++EG  LTA V+S+EDHGYI+  G+P  +GFL   +    S  D    +  G L+   V 
Sbjct: 242 LKEGFTLTAAVQSVEDHGYIVDLGIPDVSGFLSFKDAPTTSTDDEDAKLPVGSLVNATVL 301

Query: 152 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 211
            + +  +   +++DP   +     ++  ++   ++PG +V + + +    G+ L  + +F
Sbjct: 302 KLSKNGRTCNVTADPAKFTSSFATEVTNVAA--VLPGTLVQSLITAASPTGLNLQVIGFF 359

Query: 212 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYLLHNRA-- 266
            GT+D  HL+         ND+N  KK+ AR+L+     P   A+ L  +   L +R   
Sbjct: 360 DGTIDEVHLRQ-----GSSNDWNVGKKIKARVLYNYSDSPPKLALALNEHIIALDSRKIK 414

Query: 267 PPSHV--------KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 318
            P +          +G   + +K+VRV+   GL++ +         +V IS  ++E V  
Sbjct: 415 NPDNTMTDFRERYPIGRTVENAKIVRVEPERGLIVQLEP---GVEGFVHISHTSDEHVPS 471

Query: 319 LEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 376
           L     +K GS  R R+ G+  L+GL    +K S  E      SDV+PG +VKG +  + 
Sbjct: 472 LSAAGAHKIGSTHRARVTGYFPLDGLLQLSMKPSILEQKYLQVSDVQPGQIVKGTIKKLT 531

Query: 377 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 434
                V   G +  +    H ++  + +PGK+FK GA +  RVL V    KRI++T KKT
Sbjct: 532 DSALFVSLSGNMDGVVWPNHYADIALKQPGKRFKAGASIKCRVLVVDEGRKRISLTAKKT 591

Query: 435 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 494
           L+ S L +L+ Y +A   ++TH  + K+      V FYN ++   P  +    P    + 
Sbjct: 592 LIDSTLPVLARYEDAQVGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKDAVESPDQRLAD 651

Query: 495 MYHVGQVVKCRIMSSIPASRRINLSFMM-----KPTRVSEDDLVKLGSLVSGVVDVVTPN 549
            + VG+ VK R+ S  P  RRI  S        +P  ++    V++G ++ G V  V   
Sbjct: 652 SFPVGKPVKVRLTSLEPEQRRIVASIRQAAGASQPVPLT---AVEIGDILPGKVTEVHKE 708

Query: 550 AVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDN--ESSNLLLS 606
             ++ +   G  +  +   ++A      A  +++ ++PG     L+V++   E   +++S
Sbjct: 709 HALLTLQPSGV-RALVSLANVAMLRGVSAAQVRTALQPGEVLPDLVVVERSPEKGFVIVS 767

Query: 607 AKYSLINSAQQLPSDA-------SHIHPNSVVHGYVCNIIETGCFVRFLGRLTG-FAPRS 658
            K S   + +   + A              VV G V   ++ G  V+   ++ G   P  
Sbjct: 768 GKPSKPKATKGADASAKPAAITLDTAEVGQVVTGRVTRHVQKGALVKVTAKVRGILHPSD 827

Query: 659 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
            A D           V   V++ I+ ++ E  ++ LS + S  S
Sbjct: 828 VADDFNHVKGQPLPAVDAVVKAAIVGIDRENKQLILSTRPSRVS 871



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 26/266 (9%)

Query: 452 RLITHGWITKIE-KHGCFVRFYNGVQGFAPRSELGLD--PGCEPSSMYHVGQVVKCRIMS 508
           R + +  I ++E + G  V+   GV+GF   S    +  P    +  + +G   + R+  
Sbjct: 431 RTVENAKIVRVEPERGLIVQLEPGVEGFVHISHTSDEHVPSLSAAGAHKIGSTHRARVTG 490

Query: 509 SIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 564
             P    + LS  MKP+ + +  L    V+ G +V G +  +T +A+  +V   G   G 
Sbjct: 491 YFPLDGLLQLS--MKPSILEQKYLQVSDVQPGQIVKGTIKKLTDSAL--FVSLSGNMDGV 546

Query: 565 IPTEHLADHLEHATVMKSVIKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQ 617
           +   H AD         ++ +PG  F        ++LV+D     + L+AK +LI+S   
Sbjct: 547 VWPNHYADI--------ALKQPGKRFKAGASIKCRVLVVDEGRKRISLTAKKTLIDSTLP 598

Query: 618 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 677
           + +         V H  V  + +    V F   L    P   AV+     L+ ++ VG+ 
Sbjct: 599 VLARYEDAQVGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKDAVESPDQRLADSFPVGKP 658

Query: 678 VRSNILDVNSETGRITLSLKQSCCSS 703
           V+  +  +  E  RI  S++Q+  +S
Sbjct: 659 VKVRLTSLEPEQRRIVASIRQAAGAS 684



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 133/298 (44%), Gaps = 38/298 (12%)

Query: 908  KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
            KA    + S+   A    + +VG +V   +T        +K      G +H ++V DD +
Sbjct: 774  KATKGADASAKPAAITLDTAEVGQVVTGRVTRHVQKGALVKVTAKVRGILHPSDVADDFN 833

Query: 968  NVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVS---EIGSKLLF 1022
            +V         +   V A I+   + NK  +       LS +PS ++      +  K + 
Sbjct: 834  HVKGQPLP--AVDAVVKAAIVGIDRENKQLI-------LSTRPSRVSPQPDRSVRDKEIG 884

Query: 1023 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI--LDSAYEPSELQEFQRRFHIGK 1080
            E  D+ +GQ V G++  V +    +T+ R L A++ I  L   Y    ++E++ RF + +
Sbjct: 885  EISDLHVGQTVRGFIKSVADHGLFVTVGRGLDARVQIKELFDDY----VKEWKPRFKVNQ 940

Query: 1081 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1140
             V G +L ++ E K + +  R  ++ +   T+ I++      + EG +V G +++I    
Sbjct: 941  VVEGRILQVDAESKKIEMTFRS-EEALKSSTLTIAD------LKEGQVVDGTVNRIEP-- 991

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD-PLSGYDEGQFVKCKVLEIS 1197
             GL++QI          ++LK +C     +   +   D  L G+  G  VK  +L+++
Sbjct: 992  YGLLIQI--------QRSKLKGLCRKTEFTDNKDADVDAALEGFRAGDKVKACILKLA 1041



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 124/568 (21%), Positives = 227/568 (39%), Gaps = 77/568 (13%)

Query: 833  DLGVHQTVNAIVEIVKEN-YLV-LSLPEYNHSIGY----ASVSDYNTQKFPQKQFLNGQS 886
            DL    T+ A V+ V+++ Y+V L +P+ +  + +     + +D    K P    +N   
Sbjct: 241  DLKEGFTLTAAVQSVEDHGYIVDLGIPDVSGFLSFKDAPTTSTDDEDAKLPVGSLVN--- 297

Query: 887  VIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELR 946
              ATV+ L   S  GR   +    ++  +S +      ++   G+LVQ+ IT   P  L 
Sbjct: 298  --ATVLKL---SKNGRTCNVTADPAKFTSSFATEVTNVAAVLPGTLVQSLITAASPTGLN 352

Query: 947  LKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK-SNKPDMKKSFLWELS 1005
            L+    F G I    +    SN       ++ +G+ + AR++   S+ P      L E  
Sbjct: 353  LQVIGFFDGTIDEVHLRQGSSN-------DWNVGKKIKARVLYNYSDSPPKLALALNEHI 405

Query: 1006 IKPSMLTVSEIGSKLLFEECDVSIGQRV-TGYVYKVDNEWALLT-ISRHLKAQLFILDSA 1063
            I      +    + +        IG+ V    + +V+ E  L+  +   ++  + I  ++
Sbjct: 406  IALDSRKIKNPDNTMTDFRERYPIGRTVENAKIVRVEPERGLIVQLEPGVEGFVHISHTS 465

Query: 1064 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1123
             E            IG      V        LL+L ++P    +  K + +S+      +
Sbjct: 466  DEHVPSLSAAGAHKIGSTHRARVTGYFPLDGLLQLSMKP--SILEQKYLQVSD------V 517

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
              G IV G I K+      L V +  ++ G V      +I +  P      G+      +
Sbjct: 518  QPGQIVKGTIKKLTDS--ALFVSLSGNMDGVVWPNHYADIALKQP------GKR-----F 564

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
              G  +KC+VL +     G   + L+ + +L              +D+    L + ED  
Sbjct: 565  KAGASIKCRVLVVDE---GRKRISLTAKKTL--------------IDSTLPVLARYEDAQ 607

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE----FPIGKLVAGRV 1299
              M+    V  V  K   +     L A V   +     VESP++     FP+GK V  R+
Sbjct: 608  VGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKD----AVESPDQRLADSFPVGKPVKVRL 663

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN- 1358
             S+EP  +R+  +++    + A  S+   L+ + +GDI+ G++  V      +T++ +  
Sbjct: 664  TSLEPEQRRIVASIR----QAAGASQPVPLTAVEIGDILPGKVTEVHKEHALLTLQPSGV 719

Query: 1359 --LVGLCHVSELSEDHVDNIETIYRAGE 1384
              LV L +V+ L       + T  + GE
Sbjct: 720  RALVSLANVAMLRGVSAAQVRTALQPGE 747



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 8/173 (4%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            ++ D+ P  IV+G +K +T    F+ LS  +D  V  ++ +D  ++ P K F  G  +  
Sbjct: 513  QVSDVQPGQIVKGTIKKLTDSALFVSLSGNMDGVVWPNHYADIALKQPGKRFKAGASIKC 572

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITI 1354
            RVL V+   KR+ +T K    +T   S +  L+   +  VG +    + +V    L +  
Sbjct: 573  RVLVVDEGRKRISLTAK----KTLIDSTLPVLARYEDAQVGMVTHAVVFKVFDKHLMVEF 628

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             N NL  +    +  E     +   +  G+ VKV++  ++ E+RRI   ++ +
Sbjct: 629  YN-NLKAIVPAKDAVESPDQRLADSFPVGKPVKVRLTSLEPEQRRIVASIRQA 680



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 139/653 (21%), Positives = 256/653 (39%), Gaps = 93/653 (14%)

Query: 200  ENGVMLSFLTYFTGTVDIFHLQNT-FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 258
            E G+++       G V I H  +   P+ +    +       AR+    P    + L++ 
Sbjct: 444  ERGLIVQLEPGVEGFVHISHTSDEHVPSLSAAGAHKIGSTHRARVTGYFPLDGLLQLSMK 503

Query: 259  PYLLHNR-APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 317
            P +L  +    S V+ G I   +     D  L + L      V  P +   +D+A   ++
Sbjct: 504  PSILEQKYLQVSDVQPGQIVKGTIKKLTDSALFVSLSGNMDGVVWPNH--YADIA---LK 558

Query: 318  KLEKKYKEGSCVRVRIL----GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
            +  K++K G+ ++ R+L    G + +   A   L  S    L   + D + GMV    V 
Sbjct: 559  QPGKRFKAGASIKCRVLVVDEGRKRISLTAKKTLIDSTLPVLA-RYEDAQVGMVTHAVVF 617

Query: 374  AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTH 431
             V     +V+F   +KA+ P     E    +    F VG  +  R+  L  + +RI  + 
Sbjct: 618  KVFDKHLMVEFYNNLKAIVPAKDAVESPDQRLADSFPVGKPVKVRLTSLEPEQRRIVASI 677

Query: 432  KKTLVKSKLAILSSYAEATDRLITHGWITKIEK-HGCFVRFYNGVQGFAPRSELGLDPGC 490
            ++    S+   L++  E  D  I  G +T++ K H       +GV+     + + +  G 
Sbjct: 678  RQAAGASQPVPLTAV-EIGD--ILPGKVTEVHKEHALLTLQPSGVRALVSLANVAMLRGV 734

Query: 491  EPSSMYHVGQ--------VVKCR-------IMSSIPASRRIN--LSFMMKPTRVSEDDLV 533
              + +    Q        VV  R       I+S  P+  +         KP  ++ D   
Sbjct: 735  SAAQVRTALQPGEVLPDLVVVERSPEKGFVIVSGKPSKPKATKGADASAKPAAITLD-TA 793

Query: 534  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-----TVMKSVIKPGY 588
            ++G +V+G V        +V V AK   +G +    +AD   H        + +V+K   
Sbjct: 794  EVGQVVTGRVTRHVQKGALVKVTAK--VRGILHPSDVADDFNHVKGQPLPAVDAVVKAA- 850

Query: 589  EFDQLLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETG 642
                ++ +D E+  L+LS + S ++             + S +H    V G++ ++ + G
Sbjct: 851  ----IVGIDRENKQLILSTRPSRVSPQPDRSVRDKEIGEISDLHVGQTVRGFIKSVADHG 906

Query: 643  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
             FV     L       +  D    +    + V Q V   IL V++E+ +I ++       
Sbjct: 907  LFVTVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQVDAESKKIEMT------- 959

Query: 703  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 762
                      F  EE    L+SS    ++LK       G V++G V+    +G+++   +
Sbjct: 960  ----------FRSEE---ALKSSTLTIADLKE------GQVVDGTVNRIEPYGLLIQI-Q 999

Query: 763  HSDVYGFITHHQLA-------GATVE---SGSVIQAAILDVAKAERLVDLSLK 805
             S + G     +          A +E   +G  ++A IL +  A+R + LSLK
Sbjct: 1000 RSKLKGLCRKTEFTDNKDADVDAALEGFRAGDKVKACILKL--ADRRIALSLK 1050



 Score = 47.8 bits (112), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 114/526 (21%), Positives = 204/526 (38%), Gaps = 73/526 (13%)

Query: 78  IWLSLRLSLL-YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-- 134
           + LS++ S+L  K L +  VQ G ++   +K + D    +     +  G +  N+ A+  
Sbjct: 498 LQLSMKPSILEQKYLQVSDVQPGQIVKGTIKKLTDSALFVSLS-GNMDGVVWPNHYADIA 556

Query: 135 --NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP----- 187
               G   K G  ++  V  +D  RK + L++             K   ID  +P     
Sbjct: 557 LKQPGKRFKAGASIKCRVLVVDEGRKRISLTA-------------KKTLIDSTLPVLARY 603

Query: 188 -----GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 242
                GM+    V  + +  +M+ F       V       + P     + +   K V  R
Sbjct: 604 EDAQVGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKDAVES-PDQRLADSFPVGKPVKVR 662

Query: 243 ILFVDPTSRAVGLTLNPYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPS---T 298
           +  ++P  R +  ++      ++  P + V++GDI    KV  V +   LL   PS    
Sbjct: 663 LTSLEPEQRRIVASIRQAAGASQPVPLTAVEIGDIL-PGKVTEVHKEHALLTLQPSGVRA 721

Query: 299 PVSTPAYVTISDVAEEEVRK-------------LEKKYKEGSCVRVRILGFRHLEGLATG 345
            VS      +  V+  +VR              +E+  ++G      I+  +  +  AT 
Sbjct: 722 LVSLANVAMLRGVSAAQVRTALQPGEVLPDLVVVERSPEKGFV----IVSGKPSKPKATK 777

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA-LCPLPHMSEFEIVK 404
              ASA    + T    + G VV G+V      GA+V+    V+  L P     +F  VK
Sbjct: 778 GADASAKPAAI-TLDTAEVGQVVTGRVTRHVQKGALVKVTAKVRGILHPSDVADDFNHVK 836

Query: 405 ----PGKKFKVGAELVF-------RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL 453
               P     V A +V         +L  +  R++    +++   ++  +S         
Sbjct: 837 GQPLPAVDAVVKAAIVGIDRENKQLILSTRPSRVSPQPDRSVRDKEIGEISDLHVGQ--- 893

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
              G+I  +  HG FV    G+       EL  D   E    + V QVV+ RI+     S
Sbjct: 894 TVRGFIKSVADHGLFVTVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQVDAES 953

Query: 514 RRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 555
           ++I ++F     +K + ++  DL K G +V G V+ + P  +++ +
Sbjct: 954 KKIEMTFRSEEALKSSTLTIADL-KEGQVVDGTVNRIEPYGLLIQI 998


>gi|336389636|gb|EGO30779.1| hypothetical protein SERLADRAFT_444441 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1430

 Score =  338 bits (867), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 275/915 (30%), Positives = 452/915 (49%), Gaps = 112/915 (12%)

Query: 925  SSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 981
            SSYD   +G +  A +++I    ++++F       I + EV      V   L   F +G+
Sbjct: 579  SSYDDDNIGLVTDAAVSKILDKAIQVEFYNNVKAIIPLQEVG----QVTGKLADEFSVGK 634

Query: 982  TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1041
             V  RII+   K     +     SI+   L V  + + +      V IG  V G V ++ 
Sbjct: 635  VVKVRIISIDAKNQRMVA-----SIRQVTLNVQSVAATI----TGVEIGSTVEGIVTEIH 685

Query: 1042 NEWALLTISRHLKAQLFILD--SAYEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRL 1098
                 L++       L  L   + +  +   + +    +G  V   V+ S N EK  + L
Sbjct: 686  TRNIALSLQPTQAPALISLRNLANHYGTTSAKLEMSLKVGDRVDRLVVVSRNLEKDFV-L 744

Query: 1099 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1158
            V+   +     K   +S D ++     G +VGGR+++      G  V+I   + G +H T
Sbjct: 745  VVGNLRGRAVIKKGAVSMDTIEI----GQVVGGRVTRHCHS--GAHVKISTRISGSLHPT 798

Query: 1159 ELKNICVSDPLSGYDEG-QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1217
            +     VSD    YD G  F P+        +K  V+ I ++     H  LS R S    
Sbjct: 799  D-----VSD---NYDAGISFLPVD-----SILKAVVIGIDKS---NNHATLSTRPSRFLP 842

Query: 1218 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1277
              T    L TD     + ++   +L     V+G+VK+V+  G F+ML R +DA+V +  L
Sbjct: 843  VKTG---LVTD-----REIKAFAELKTGDTVRGFVKSVSEHGLFVMLGRGIDARVQIKEL 894

Query: 1278 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1337
             + +V+  +  F   ++V G +LSV+ L+K+VE+T ++ D  T   ++    ++LH G  
Sbjct: 895  FNTFVKDWKSRFTANQVVKGSILSVDVLTKKVEMTFRSRD-LTRDGTDSFTFADLHQGQK 953

Query: 1338 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI----YRAGEKVKVKILKV 1393
            V G++KR+E YGLFI I+ + L GLCH SELS D+ D   T+    +R G+ VK  IL +
Sbjct: 954  VTGRVKRIELYGLFIEIDGSTLSGLCHKSELS-DNKDADVTVSLGNFREGDPVKALILSI 1012

Query: 1394 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV----AVQD 1449
            D+E RRIS G+K SYF  D        E + D  +++ G    S + +N  +     V D
Sbjct: 1013 DQENRRISFGLKPSYFVGD------DHEADMDIVLQDRGEGTMSVVCDNGELLAIREVVD 1066

Query: 1450 MDM---------ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH----- 1495
             D          E ++ G  +LA I    + P  ++            + QN  H     
Sbjct: 1067 SDHSSRKDVSSGEQQNDGEDMLADI----ATPLTQL--------YTASLLQNSAHLLNLE 1114

Query: 1496 ------------TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFER 1543
                        +    + D    ++ K   K  ++ ++ A     +    P    +FE+
Sbjct: 1115 AFQWFDLGTLSESSSKSSEDGDLGQNKKTFRKGVKDGDLTAD----IHFQPPEAIADFEK 1170

Query: 1544 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1603
            L+  SPNSSF+WI+Y++F L ++++++AR +  RA+QTIN REE EKLN+W+A  NLEN 
Sbjct: 1171 LLLGSPNSSFLWIRYISFQLQLSELDRARELGRRAIQTINFREEQEKLNVWIAMLNLENT 1230

Query: 1604 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1663
            YG    + +   F+ AL+Y D K +HL L  ++E++E+++ A+E   +  +KF HS KVW
Sbjct: 1231 YGT--NDTLETTFKDALRYNDAKTLHLRLAAIFEQSEKHEKAEEQYIRACRKFSHSSKVW 1288

Query: 1664 LRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1722
                +  L+  + E  + ++  +L SL  +KH+K IS+ A +E+K G  +RG+++FEG +
Sbjct: 1289 TLFAEYYLRCGKLEQARRLLSASLHSLEINKHLKTISRFAQMEYKLGDPERGKTIFEGAV 1348

Query: 1723 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1782
              +PKR DLWS+Y+D E     +  +R +F R  ++++     K+ FKK+L+ E+  G  
Sbjct: 1349 DSHPKRWDLWSVYIDMEAGQCAMQNLRDIFNRVFAINMTGHNAKYFFKKWLDLEQKFGHG 1408

Query: 1783 ERIEYVKQKAMEYVE 1797
            E    VK KAME+V+
Sbjct: 1409 EGAIAVKVKAMEWVQ 1423



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 170/685 (24%), Positives = 304/685 (44%), Gaps = 51/685 (7%)

Query: 49  LPTIFHVGQLVSCIVLQL----DDDKKEIGK---------RKIWLSLRLSLLYKGLSLET 95
           L  +F+ GQ V  IV+        D   +GK         R+I LSL    +  G+    
Sbjct: 171 LAHLFYPGQYVRAIVIATHAAGSADVCGLGKVRNDAIRASRRIELSLIPERVNAGVQKSD 230

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL--AENSGIDVKPGLLLQGVVRSI 153
           +  G  ++A ++S+EDHGYI   G+   +GFL   +   A  +      G L++  V  +
Sbjct: 231 LTTGFTMSAALRSVEDHGYIFDLGISDTSGFLSFKDYRKAHVNTNHFVVGSLVEVCVTEM 290

Query: 154 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 213
               +   LS DP+ ++     ++  +S   ++PG MV + + S    G+ L  L +F G
Sbjct: 291 STDGRNCTLSVDPELLASASLSEVTHVSS--ILPGSMVQSLIISAKPAGLNLKLLHFFNG 348

Query: 214 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR----AVGLTLNPYLLHNRAPPS 269
            V+ FHL    P    + +Y   +KV AR+L+   +S     AV L  +   L  +    
Sbjct: 349 VVNEFHL----PAGEME-EYKVGRKVKARVLYSVHSSPYPTFAVSLADHIIGLKKKEEVE 403

Query: 270 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--YKEGS 327
              +G + +  +V +++   GL++++         +V IS ++++ V  L     +K  +
Sbjct: 404 SYPIGTVLEAVRVNKLEGEQGLIVEVQP---GVEGFVHISQISDDHVLSLSATGPWKLNT 460

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 387
             R R+ G   L+G+    L+ S  E       ++  G V++G +  +      +     
Sbjct: 461 IHRGRVTGLHPLDGILQLSLRRSVLEQKFLEAGEILVGEVLRGTIKQMTKSALFISISAN 520

Query: 388 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSS 445
           V  +    H ++  I  P  +FK+G  +  RVL + S  +RI +T KKTLV+S L ILSS
Sbjct: 521 VDGVVWPNHYADIAIKHPTLRFKLGVSIKCRVLTIDSEQRRIVLTAKKTLVESTLPILSS 580

Query: 446 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 505
           Y +    L+T   ++KI      V FYN V+   P  E+G   G + +  + VG+VVK R
Sbjct: 581 YDDDNIGLVTDAAVSKILDKAIQVEFYNNVKAIIPLQEVGQVTG-KLADEFSVGKVVKVR 639

Query: 506 IMS-------SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV-DVVTPNAVVVYVIA 557
           I+S        + + R++ L+       ++    V++GS V G+V ++ T N  +   + 
Sbjct: 640 IISIDAKNQRMVASIRQVTLNVQSVAATITG---VEIGSTVEGIVTEIHTRN--IALSLQ 694

Query: 558 KGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINS 614
              +   I   +LA+H    +  ++  +K G   D+L+V+    E   +L+         
Sbjct: 695 PTQAPALISLRNLANHYGTTSAKLEMSLKVGDRVDRLVVVSRNLEKDFVLVVGNLRGRAV 754

Query: 615 AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 674
            ++       I    VV G V     +G  V+   R++G    +   D   A +S    V
Sbjct: 755 IKKGAVSMDTIEIGQVVGGRVTRHCHSGAHVKISTRISGSLHPTDVSDNYDAGIS-FLPV 813

Query: 675 GQSVRSNILDVNSETGRITLSLKQS 699
              +++ ++ ++      TLS + S
Sbjct: 814 DSILKAVVIGIDKSNNHATLSTRPS 838


>gi|336376655|gb|EGO04990.1| hypothetical protein SERLA73DRAFT_157761 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1437

 Score =  338 bits (867), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 272/914 (29%), Positives = 449/914 (49%), Gaps = 110/914 (12%)

Query: 925  SSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 981
            SSYD   +G +  A +++I    ++++F       I + EV      V   L   F +G+
Sbjct: 586  SSYDDDNIGLVTDAAVSKILDKAIQVEFYNNVKAIIPLQEVG----QVTGKLADEFSVGK 641

Query: 982  TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1041
             V  RII+   K     +     SI+   L V  + + +      V IG  V G V ++ 
Sbjct: 642  VVKVRIISIDAKNQRMVA-----SIRQVTLNVQSVAATI----TGVEIGSTVEGIVTEIH 692

Query: 1042 NEWALLTISRHLKAQLFILD--SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1099
                 L++       L  L   + +  +   + +    +G  V   V+     +K   LV
Sbjct: 693  TRNIALSLQPTQAPALISLRNLANHYGTTSAKLEMSLKVGDRVDRLVVVSRNLEKDFVLV 752

Query: 1100 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1159
            +   +     K   +S D ++     G +VGGR+++      G  V+I   + G +H T+
Sbjct: 753  VGNLRGRAVIKKGAVSMDTIEI----GQVVGGRVTRHCHS--GAHVKISTRISGSLHPTD 806

Query: 1160 LKNICVSDPLSGYDEG-QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1218
                 VSD    YD G  F P+        +K  V+ I ++     H  LS R S     
Sbjct: 807  -----VSD---NYDAGISFLPVD-----SILKAVVIGIDKS---NNHATLSTRPSRFLPV 850

Query: 1219 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1278
             T    L TD     + ++   +L     V+G+VK+V+  G F+ML R +DA+V +  L 
Sbjct: 851  KTG---LVTD-----REIKAFAELKTGDTVRGFVKSVSEHGLFVMLGRGIDARVQIKELF 902

Query: 1279 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV 1338
            + +V+  +  F   ++V G +LSV+ L+K+VE+T ++ D  T   ++    ++LH G  V
Sbjct: 903  NTFVKDWKSRFTANQVVKGSILSVDVLTKKVEMTFRSRD-LTRDGTDSFTFADLHQGQKV 961

Query: 1339 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI----YRAGEKVKVKILKVD 1394
             G++KR+E YGLFI I+ + L GLCH SELS D+ D   T+    +R G+ VK  IL +D
Sbjct: 962  TGRVKRIELYGLFIEIDGSTLSGLCHKSELS-DNKDADVTVSLGNFREGDPVKALILSID 1020

Query: 1395 KEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV----AVQDM 1450
            +E RRIS G+K SYF  D        E + D  +++ G    S + +N  +     V D 
Sbjct: 1021 QENRRISFGLKPSYFVGD------DHEADMDIVLQDRGEGTMSVVCDNGELLAIREVVDS 1074

Query: 1451 DM---------ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH------ 1495
            D          E ++ G  +LA I    + P  ++            + QN  H      
Sbjct: 1075 DHSSRKDVSSGEQQNDGEDMLADI----ATPLTQL--------YTASLLQNSAHLLNLEA 1122

Query: 1496 -----------TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERL 1544
                       +    + D    ++ K   K  ++ ++ A     +    P    +FE+L
Sbjct: 1123 FQWFDLGTLSESSSKSSEDGDLGQNKKTFRKGVKDGDLTAD----IHFQPPEAIADFEKL 1178

Query: 1545 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1604
            +  SPNSSF+WI+Y++F L ++++++AR +  RA+QTIN REE EKLN+W+A  NLEN Y
Sbjct: 1179 LLGSPNSSFLWIRYISFQLQLSELDRARELGRRAIQTINFREEQEKLNVWIAMLNLENTY 1238

Query: 1605 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1664
            G    + +   F+ AL+Y D K +HL L  ++E++E+++ A+E   +  +KF HS KVW 
Sbjct: 1239 GT--NDTLETTFKDALRYNDAKTLHLRLAAIFEQSEKHEKAEEQYIRACRKFSHSSKVWT 1296

Query: 1665 RRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1723
               +  L+  + E  + ++  +L SL  +KH+K IS+ A +E+K G  +RG+++FEG + 
Sbjct: 1297 LFAEYYLRCGKLEQARRLLSASLHSLEINKHLKTISRFAQMEYKLGDPERGKTIFEGAVD 1356

Query: 1724 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1783
             +PKR DLWS+Y+D E     +  +R +F R  ++++     K+ FKK+L+ E+  G  E
Sbjct: 1357 SHPKRWDLWSVYIDMEAGQCAMQNLRDIFNRVFAINMTGHNAKYFFKKWLDLEQKFGHGE 1416

Query: 1784 RIEYVKQKAMEYVE 1797
                VK KAME+V+
Sbjct: 1417 GAIAVKVKAMEWVQ 1430



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 170/685 (24%), Positives = 304/685 (44%), Gaps = 51/685 (7%)

Query: 49  LPTIFHVGQLVSCIVLQL----DDDKKEIGK---------RKIWLSLRLSLLYKGLSLET 95
           L  +F+ GQ V  IV+        D   +GK         R+I LSL    +  G+    
Sbjct: 178 LAHLFYPGQYVRAIVIATHAAGSADVCGLGKVRNDAIRASRRIELSLIPERVNAGVQKSD 237

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL--AENSGIDVKPGLLLQGVVRSI 153
           +  G  ++A ++S+EDHGYI   G+   +GFL   +   A  +      G L++  V  +
Sbjct: 238 LTTGFTMSAALRSVEDHGYIFDLGISDTSGFLSFKDYRKAHVNTNHFVVGSLVEVCVTEM 297

Query: 154 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 213
               +   LS DP+ ++     ++  +S   ++PG MV + + S    G+ L  L +F G
Sbjct: 298 STDGRNCTLSVDPELLASASLSEVTHVSS--ILPGSMVQSLIISAKPAGLNLKLLHFFNG 355

Query: 214 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR----AVGLTLNPYLLHNRAPPS 269
            V+ FHL    P    + +Y   +KV AR+L+   +S     AV L  +   L  +    
Sbjct: 356 VVNEFHL----PAGEME-EYKVGRKVKARVLYSVHSSPYPTFAVSLADHIIGLKKKEEVE 410

Query: 270 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--YKEGS 327
              +G + +  +V +++   GL++++         +V IS ++++ V  L     +K  +
Sbjct: 411 SYPIGTVLEAVRVNKLEGEQGLIVEVQP---GVEGFVHISQISDDHVLSLSATGPWKLNT 467

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 387
             R R+ G   L+G+    L+ S  E       ++  G V++G +  +      +     
Sbjct: 468 IHRGRVTGLHPLDGILQLSLRRSVLEQKFLEAGEILVGEVLRGTIKQMTKSALFISISAN 527

Query: 388 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSS 445
           V  +    H ++  I  P  +FK+G  +  RVL + S  +RI +T KKTLV+S L ILSS
Sbjct: 528 VDGVVWPNHYADIAIKHPTLRFKLGVSIKCRVLTIDSEQRRIVLTAKKTLVESTLPILSS 587

Query: 446 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 505
           Y +    L+T   ++KI      V FYN V+   P  E+G   G + +  + VG+VVK R
Sbjct: 588 YDDDNIGLVTDAAVSKILDKAIQVEFYNNVKAIIPLQEVGQVTG-KLADEFSVGKVVKVR 646

Query: 506 IMS-------SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV-DVVTPNAVVVYVIA 557
           I+S        + + R++ L+       ++    V++GS V G+V ++ T N  +   + 
Sbjct: 647 IISIDAKNQRMVASIRQVTLNVQSVAATITG---VEIGSTVEGIVTEIHTRN--IALSLQ 701

Query: 558 KGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINS 614
              +   I   +LA+H    +  ++  +K G   D+L+V+    E   +L+         
Sbjct: 702 PTQAPALISLRNLANHYGTTSAKLEMSLKVGDRVDRLVVVSRNLEKDFVLVVGNLRGRAV 761

Query: 615 AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 674
            ++       I    VV G V     +G  V+   R++G    +   D   A +S    V
Sbjct: 762 IKKGAVSMDTIEIGQVVGGRVTRHCHSGAHVKISTRISGSLHPTDVSDNYDAGIS-FLPV 820

Query: 675 GQSVRSNILDVNSETGRITLSLKQS 699
              +++ ++ ++      TLS + S
Sbjct: 821 DSILKAVVIGIDKSNNHATLSTRPS 845


>gi|159489442|ref|XP_001702706.1| RNA binding rRNA processing protein [Chlamydomonas reinhardtii]
 gi|158280728|gb|EDP06485.1| RNA binding rRNA processing protein [Chlamydomonas reinhardtii]
          Length = 1280

 Score =  335 bits (860), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 157/298 (52%), Positives = 222/298 (74%), Gaps = 4/298 (1%)

Query: 1507 NRHAKKKEKEEREQEIRAAE-ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1565
            ++ AKK+ KE+ E+EIR AE  RL    AP+TP +FERLV +SPNSSFVWIKYMA  + +
Sbjct: 981  SKAAKKRLKEQHEREIREAELARLSGTAAPQTPADFERLVLASPNSSFVWIKYMAHHIGL 1040

Query: 1566 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN--PPEEAVVKVFQRALQYC 1623
             D++ AR +A+RAL +IN REE EK N+WVA+ NLEN +G    PEEA + + +RAL Y 
Sbjct: 1041 GDMDAARKVAQRALDSINYREEGEKFNVWVAWLNLENAFGTQPSPEEAAMGLLRRALSYT 1100

Query: 1624 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR-LLKQQQEGVQAVV 1682
            D KK+++A LG++ER+ + +LA+++   + KKF  SCKVW+R ++R L+K   EG + ++
Sbjct: 1101 DQKKMYMAALGIFERSGKEELAEQVAKTLTKKFGGSCKVWVRALERALVKDDGEGARKLL 1160

Query: 1683 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1742
            +RA  SLP  KHIK +++ A+ EF+ G A+RGR + EG+L  YPKR DLW++Y+DQEI+ 
Sbjct: 1161 ERATQSLPGRKHIKLLTRAALSEFRLGSAERGRGILEGVLRNYPKRLDLWNVYIDQEIKT 1220

Query: 1743 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
            G+   IR LFERA  L LPPKKMKFLF++YLEYEK  G++  +E+VK++AME+VE++L
Sbjct: 1221 GEQPRIRALFERATHLPLPPKKMKFLFRRYLEYEKEEGDDASVEHVKRRAMEFVENSL 1278



 Score =  149 bits (375), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 157/598 (26%), Positives = 254/598 (42%), Gaps = 110/598 (18%)

Query: 842  AIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSV--IATVMALPSSST 899
            A V+  ++ + VL  P    S   A + DY  ++    Q L G  V     V  L     
Sbjct: 426  ATVDAARQRFTVLLRPSATASSDAAYLIDY-FREMAALQVLRGDEVKDFGLVADLDGHPD 484

Query: 900  AGRLLLLLKA-ISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI- 957
             G + L LK  ++     ++   +       G+ V+A +  I+P E  L   +  H  + 
Sbjct: 485  VGLVELSLKPELTAAAKDAAASKEALRKLKPGTQVEAVVEGIRPGEY-LILSLPSHAHLL 543

Query: 958  ---HITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1014
                IT+ N  + + V   F+     Q V A ++ +    +  K  + +LS++PS L ++
Sbjct: 544  AYAAITDFNTPRPDAVPRKFT-----QVVEAVVLGRLQGGEGHKRGVMDLSLRPSRLAIA 598

Query: 1015 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1074
                K   +   V +G  V G                  +   F+L    EP        
Sbjct: 599  R---KAEPQAPPVVLGDLVPGQ-----------------QLTCFVL----EP-------- 626

Query: 1075 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1134
                G  V   VL++N +K  L L L P                      EG +V GRI 
Sbjct: 627  ----GAPVLARVLAVNAKKHTLDLSLAPLP-------------------AEGALVMGRI- 662

Query: 1135 KILSGVG-GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
              LS  G G+ V +GP   GRV  T++ +  V D L+G  EG +           V+ +V
Sbjct: 663  --LSASGAGVRVSLGPKRAGRVALTDIHDAAVPDALAGLTEGTY-----------VRVRV 709

Query: 1194 LEISRTVRGTFHVELSLRSS-------------------LDGMSSTNSSDLSTDVDTPGK 1234
            L       G F V LSLR S                           ++        P  
Sbjct: 710  LGKD----GDFAV-LSLRPSRGGAIAGAAGAAGAAAAAGGKKGKDAAAAKDQAAAAAPQP 764

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
             L  +  +     + GYVK   +KG F+ L R  D ++ L NLSDG++E P   FP G  
Sbjct: 765  ELLDVSGVKVGDSLGGYVKRCDAKGVFVALDRYRDGRIKLGNLSDGFIEDPAAAFPPGCR 824

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            +  RV+++E    R+E++L+T+    +S + I +L+ L  G +V G+++RVE +G+F+ +
Sbjct: 825  LEARVVALE-ADGRLELSLRTAPRSGSSGAAIQSLAELKEGQLVSGRVRRVEKFGVFVEV 883

Query: 1355 E-NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1411
            E N+++VGL H+SEL++  V +I  +++  + VK  + K+D    R+SL MK S  + 
Sbjct: 884  EGNSSVVGLAHISELADGAVKDISALFKPKQAVKAVVTKIDAAANRLSLSMKPSVLQQ 941



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 134/634 (21%), Positives = 234/634 (36%), Gaps = 183/634 (28%)

Query: 623  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
              +   +++ GYV N+     +VRFL  LTG A   +  D   ++  + +  GQSVR  +
Sbjct: 366  GEVSEGALLSGYVANVTGDAVYVRFLAGLTGRAGLPQLSDVFVSNPRELFAEGQSVRCLV 425

Query: 683  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 742
              V++   R T+ L+ S  +S+DA+++ ++F    ++A LQ                   
Sbjct: 426  ATVDAARQRFTVLLRPSATASSDAAYLIDYF---REMAALQ------------------- 463

Query: 743  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 802
            V+ G   E  DFG+V   + H DV                                LV+L
Sbjct: 464  VLRG--DEVKDFGLVADLDGHPDVG-------------------------------LVEL 490

Query: 803  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN-YLVLSLPEYNH 861
            SLK       ++A ++++A +K         L     V A+VE ++   YL+LSLP + H
Sbjct: 491  SLKPELTAAAKDAAASKEALRK---------LKPGTQVEAVVEGIRPGEYLILSLPSHAH 541

Query: 862  SIGYASVSDYNT-------QKFPQ-------KQFLNGQSVIATVMALPSSSTAGRLLLLL 907
             + YA+++D+NT       +KF Q        +   G+     VM L  S    RL +  
Sbjct: 542  LLAYAAITDFNTPRPDAVPRKFTQVVEAVVLGRLQGGEGHKRGVMDL--SLRPSRLAIAR 599

Query: 908  KAISET-------------------ETSSSKRAK------KKSSYDV--------GSLVQ 934
            KA  +                    E  +   A+      KK + D+        G+LV 
Sbjct: 600  KAEPQAPPVVLGDLVPGQQLTCFVLEPGAPVLARVLAVNAKKHTLDLSLAPLPAEGALVM 659

Query: 935  AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 994
              I       +R+  G    GR+ +T+++D     V +  +    G  V  R++ K    
Sbjct: 660  GRILSASGAGVRVSLGPKRAGRVALTDIHD---AAVPDALAGLTEGTYVRVRVLGKDGD- 715

Query: 995  DMKKSFLWELSIKPSMLTVSEIGSKL------------------------------LFEE 1024
                     LS++PS        +                                L + 
Sbjct: 716  ------FAVLSLRPSRGGAIAGAAGAAGAAAAAGGKKGKDAAAAKDQAAAAAPQPELLDV 769

Query: 1025 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL--------FILDSAYEPSELQEFQRRF 1076
              V +G  + GYV + D +   + + R+   ++        FI D A            F
Sbjct: 770  SGVKVGDSLGGYVKRCDAKGVFVALDRYRDGRIKLGNLSDGFIEDPAAA----------F 819

Query: 1077 HIGKAVTGHVLSINKEKKL---LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1133
              G  +   V+++  + +L   LR   R    G + +++          + EG +V GR+
Sbjct: 820  PPGCRLEARVVALEADGRLELSLRTAPRSGSSGAAIQSL--------AELKEGQLVSGRV 871

Query: 1134 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1167
             ++      + V+    + G  H +EL +  V D
Sbjct: 872  RRVEKFGVFVEVEGNSSVVGLAHISELADGAVKD 905



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 3/127 (2%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            ++S   ++ GYV NVT    ++     L  +  L  LSD +V +P + F  G+ V   V 
Sbjct: 367  EVSEGALLSGYVANVTGDAVYVRFLAGLTGRAGLPQLSDVFVSNPRELFAEGQSVRCLVA 426

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
            +V+   +R  V L+ S + ++  +  I+    +    ++ G    V+ +GL   ++    
Sbjct: 427  TVDAARQRFTVLLRPSATASSDAAYLIDYFREMAALQVLRGD--EVKDFGLVADLDGHPD 484

Query: 1360 VGLCHVS 1366
            VGL  +S
Sbjct: 485  VGLVELS 491



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 47/252 (18%), Positives = 110/252 (43%), Gaps = 46/252 (18%)

Query: 302 TPAYVTISDVAEEEVRKLE------KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGL 355
            PA+  +++  E +V+  E      KK+K G+ +  R++G+R ++G+AT  ++ S     
Sbjct: 229 APAFCHVANALETKVKPEEAAADMTKKFKAGAKLPARVIGYRLMDGMATVTVRPSQV--- 285

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF------ 409
                    G  V+ +V+  ++  A    P           ++  E   PG ++      
Sbjct: 286 ---------GEKVEARVL--EALLAPKAAP-----------LASLEAAVPGGRYSGLVTG 323

Query: 410 ---KVGAELVF---RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
              ++G  + F    V    +  + +   +T  +   ++  ++ E ++  +  G++  + 
Sbjct: 324 FHDRLGVFVTFFGGVVGAAAAAELGLQPGQT-AQDVFSVGQAFGEVSEGALLSGYVANVT 382

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
               +VRF  G+ G A   +L       P  ++  GQ V+C +++++ A+R+   + +++
Sbjct: 383 GDAVYVRFLAGLTGRAGLPQLSDVFVSNPRELFAEGQSVRC-LVATVDAARQ-RFTVLLR 440

Query: 524 PTRVSEDDLVKL 535
           P+  +  D   L
Sbjct: 441 PSATASSDAAYL 452



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 92/230 (40%), Gaps = 59/230 (25%)

Query: 367 VVKGKVIAVDSFGAIVQFP-------GGVKALCPLPHMSEFEIVKP-------GKKFKVG 412
           V K +V+ VD+F              G   A C + +  E + VKP        KKFK G
Sbjct: 201 VRKAEVMRVDAFAGPGLLLRLPGLPEGPAPAFCHVANALETK-VKPEEAAADMTKKFKAG 259

Query: 413 AELVFRVLGVK--SKRITVTHK-------------KTLVKSKLAILSSYAEATDRLITHG 457
           A+L  RV+G +      TVT +             + L+  K A L+S   A       G
Sbjct: 260 AKLPARVIGYRLMDGMATVTVRPSQVGEKVEARVLEALLAPKAAPLASLEAAVPGGRYSG 319

Query: 458 WITKI-EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
            +T   ++ G FV F+ GV G A  +ELGL PG     ++ VGQ                
Sbjct: 320 LVTGFHDRLGVFVTFFGGVVGAAAAAELGLQPGQTAQDVFSVGQAF-------------- 365

Query: 517 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                     VSE      G+L+SG V  VT +AV V  +A    +  +P
Sbjct: 366 --------GEVSE------GALLSGYVANVTGDAVYVRFLAGLTGRAGLP 401


>gi|392578567|gb|EIW71695.1| hypothetical protein TREMEDRAFT_27162 [Tremella mesenterica DSM 1558]
          Length = 1475

 Score =  335 bits (860), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 335/1252 (26%), Positives = 569/1252 (45%), Gaps = 184/1252 (14%)

Query: 610  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 669
            +L+ S Q+  S+   + P  +V   +  ++ +G  V+  G   G    +    G  +D+ 
Sbjct: 329  TLVRSEQKAVSEVGSLLPGHLVIALITAVVPSGLNVKISGFYDGTIEVAHLPLGD-SDID 387

Query: 670  KTYYVGQSVRSNIL-DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ-SSKH 727
              Y VG+ V++ ++ + NS   R                    HF L     ++  SS  
Sbjct: 388  DKYKVGKKVQARVIYEANSHDPR--------------------HFSLSALPHIITFSSPT 427

Query: 728  NGSELKWVEGFIIGSVIEG--KVHESNDFGVVVSFEEHSDVYGFITH------HQLAGAT 779
              + +   +G  IG V +    V    ++GV+   ++  D +  I+H        L   T
Sbjct: 428  TKTGIPLEQGVEIGRVFDSLKVVRIIPEWGVICRTDDGLDGFVHISHLSDERLPALNSGT 487

Query: 780  VE--SGSVIQAAILDVAKAERLVDLSLKTVFIDR-FREANSNRQAQKKKRKREASKDLGV 836
             E  +G+V +  ++  +  + ++  S +   I++ F + N                +L V
Sbjct: 488  AEFRAGTVHRGRVIGHSPLDGVLLFSFERKIINQVFMQVN----------------ELQV 531

Query: 837  HQTVNAIVEIVKENYLVLSLPEYNHSIG-------YASVSDYNTQKFPQKQFLNGQSVIA 889
             Q +   ++ + +  L +++   N S+        YA +      K P+K+F  G +V A
Sbjct: 532  GQVLKGTIQRLTDQMLFVNI---NGSVDGIVRPLHYADI----VLKHPEKRFRPGSTVRA 584

Query: 890  TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV---------GSLVQAEITEI 940
             V +L  +    R++L LK           R    S  D+         G L+ A I++I
Sbjct: 585  RVFSLDPARN--RVVLTLK-----------RTLIDSPLDIPTKFENVRKGQLIPAVISKI 631

Query: 941  KPLELRLKFGIGFHGRIHITEVNDDKSN-VVENLFSNFKIGQTVTARIIAKSNKPDMKKS 999
                L     +   G +       + S  VV N+   F IG+ V  R+I  +  P+ ++ 
Sbjct: 632  ----LDKGCLVDLFGDMKAFLPQSEASEAVVANIAEIFYIGKPVNVRVIDLT--PESQRI 685

Query: 1000 FLWELSIKPSML-TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1058
            F+   S++ +    VSE+          V +G+ V G   ++     L+T++      L 
Sbjct: 686  FV---SVRQAKFDPVSEV---------PVKVGEIVNGIATEIHPAQILVTLTPSRHPALL 733

Query: 1059 ILDSAYEPSEL--QEFQRRFHIGKAVTG-HVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1115
             L S     ++   E +    +G+ V G  V+S N    LL +       G+    V +S
Sbjct: 734  SLRSLAIQRKMTDDELRSNLKVGEKVDGLRVVSKNPTTGLLIVAYTTRGGGV----VSVS 789

Query: 1116 NDNM---QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            N      ++ I  G I+ GR++       G ++Q+G  + G VH  +      SD  +  
Sbjct: 790  NTTAALEESDIQPGQIISGRVASYTPV--GTIIQLGHSVRGVVHPCD-----ASDDFAEI 842

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
             EG   PL     G+ +K  VL I    +    V+LS R S          D +T+   P
Sbjct: 843  AEGD-GPLR---VGEEIKAYVLAIDPISKA---VQLSTRVS------RAHPDQATESIDP 889

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
               +E++ +L     ++G VK+V + G F+ L R + A+V++  L D +V+  E  F + 
Sbjct: 890  --EVERVGELQSGQSIRGLVKHVAAHGLFVALGRTVTARVMIRELFDDFVKEWESHFHVN 947

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            +LV+G++LSV+    +VE+TL+   +    +     LS+   G  VI  +KRVE YG+F+
Sbjct: 948  QLVSGKILSVDEQRNQVEMTLRQDSTVRHKREAQFGLSDFKEGQKVIAVVKRVERYGMFL 1007

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
             IE + + GLCH SE+S     ++      +R G+KVK  I+ V++E  +I  G+K+SYF
Sbjct: 1008 RIEGSGVSGLCHKSEVSHSSRSDVSEALLGFRPGDKVKAMIVSVNRESGKIDFGIKASYF 1067

Query: 1410 KNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRA 1469
             ND D +  S            GS +  ++         D + ESE+ G +     +   
Sbjct: 1068 -NDDDFMGPSG----------TGSMSAPAMTHGG-----DAESESEEDGLMDEDGDDEDL 1111

Query: 1470 SVPPLE-----------VNLDDEQPD------MDNGISQNQGHTDEAKTIDEKNNRHAKK 1512
             V   E           V  DD +P           +  + G     +      +  +  
Sbjct: 1112 DVHEAEGSEEHIDVDESVEEDDPKPSPTKANVAPTALRVSAGFDWSGRAPSPVPSSSSSS 1171

Query: 1513 KEKEE----REQEIRAAEERLLEKDA---PRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1565
               E+    R +  +A  + L    A   P +  EFER + +SPNSSF+WI+YM+F L +
Sbjct: 1172 ASDEDLPSSRSKFKKAVADDLTSTSADNQPSSSAEFERALFASPNSSFLWIQYMSFQLQL 1231

Query: 1566 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1625
             +V+KAR I   AL+ I  REE EKLN+W+A  NLE  +G   EE+  KVF++A+QY D 
Sbjct: 1232 HEVDKARRIGREALEKITYREEGEKLNVWMALINLELGFGT--EESTEKVFKKAVQYNDA 1289

Query: 1626 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQR 1684
            + V++            ++ +E+  K +KKF    + W +     L K      +A++ R
Sbjct: 1290 RTVYIRYAEALTAAADMQMTEEIHKKTVKKFGAFPESWTKFASYYLAKGDTASARALLPR 1349

Query: 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
            A+ SL   KH++ I + A+LEFK+G A+RG+++FEG+L  YPK+ DLWS+Y+DQ  ++ D
Sbjct: 1350 AMKSLESSKHLEMIEKMAVLEFKHGDAERGKTLFEGLLERYPKKLDLWSVYIDQLAKVND 1409

Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            +  +R  F+RA+   L   K KFLFKK+L  E  +G+ +  E  K++A E+V
Sbjct: 1410 IQAVRTAFDRALDRKLNSTKAKFLFKKWLNIEMRIGDVKGQEKAKERAREWV 1461



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 145/642 (22%), Positives = 284/642 (44%), Gaps = 47/642 (7%)

Query: 99  GMVLTAYVKSIEDHGYILHFGLPS----FTGFLPRNNLAENSGIDVKPGLLLQGVVRSID 154
           G  +T  V S ED G+ + F   S      G+L +   AE +   +  G LL   + +  
Sbjct: 257 GYAVTGEVISEEDKGWRVKFVAESSDNVVEGWLSKAE-AEKNNFHIVVGQLLPCTISASS 315

Query: 155 RTRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 213
              +VV LS D  T+   V  + K +S +  L+PG +V   + +++ +G+ +    ++ G
Sbjct: 316 AGGRVVQLSLDHQTL---VRSEQKAVSEVGSLLPGHLVIALITAVVPSGLNVKISGFYDG 372

Query: 214 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV----DPTSRAVGLTLNPYLLHNRAPPS 269
           T+++ HL      ++  + Y   KKV AR+++     DP  R   L+  P+++   +P +
Sbjct: 373 TIEVAHL--PLGDSDIDDKYKVGKKVQARVIYEANSHDP--RHFSLSALPHIITFSSPTT 428

Query: 270 H--------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 321
                    V++G ++D  KVVR+    G+   I  T      +V IS +++E +  L  
Sbjct: 429 KTGIPLEQGVEIGRVFDSLKVVRIIPEWGV---ICRTDDGLDGFVHISHLSDERLPALNS 485

Query: 322 ---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 378
              +++ G+  R R++G   L+G+     +      +    ++++ G V+KG +  +   
Sbjct: 486 GTAEFRAGTVHRGRVIGHSPLDGVLLFSFERKIINQVFMQVNELQVGQVLKGTIQRLTDQ 545

Query: 379 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLV 436
              V   G V  +    H ++  +  P K+F+ G+ +  RV  +     R+ +T K+TL+
Sbjct: 546 MLFVNINGSVDGIVRPLHYADIVLKHPEKRFRPGSTVRARVFSLDPARNRVVLTLKRTLI 605

Query: 437 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 496
            S L I + +       +    I+KI   GC V  +  ++ F P+SE         + ++
Sbjct: 606 DSPLDIPTKFENVRKGQLIPAVISKILDKGCLVDLFGDMKAFLPQSEASEAVVANIAEIF 665

Query: 497 HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI 556
           ++G+ V  R++   P S+RI +S          +  VK+G +V+G+   + P  ++V + 
Sbjct: 666 YIGKPVNVRVIDLTPESQRIFVSVRQAKFDPVSEVPVKVGEIVNGIATEIHPAQILVTLT 725

Query: 557 AKGYSKGTIPTEHLADHLEHA-TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKY------ 609
              +    +    LA   +     ++S +K G + D L V+    +  LL   Y      
Sbjct: 726 PSRHP-ALLSLRSLAIQRKMTDDELRSNLKVGEKVDGLRVVSKNPTTGLLIVAYTTRGGG 784

Query: 610 --SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD--GQR 665
             S+ N+   L  + S I P  ++ G V +    G  ++    + G      A D   + 
Sbjct: 785 VVSVSNTTAAL--EESDIQPGQIISGRVASYTPVGTIIQLGHSVRGVVHPCDASDDFAEI 842

Query: 666 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
           A+      VG+ +++ +L ++  +  + LS + S      A+
Sbjct: 843 AEGDGPLRVGEEIKAYVLAIDPISKAVQLSTRVSRAHPDQAT 884


>gi|403260160|ref|XP_003922550.1| PREDICTED: protein RRP5 homolog [Saimiri boliviensis boliviensis]
          Length = 1838

 Score =  333 bits (855), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 363/1395 (26%), Positives = 620/1395 (44%), Gaps = 187/1395 (13%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
            M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84   MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLFHLPELF 143

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C+V  L   ++  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144  SPGMLVRCVVSSLGVTER--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114  YILHFGLPSFTGFLP-----RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLP      N   +N G  +K G  L  ++  +     VV+LS     
Sbjct: 202  YLVDIGVDGTRAFLPLLKAQENIRQKNKGAKLKVGQYLNCIIEEVKGNGGVVHLSIGHSE 261

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            VS  +  + +  +++ L+PG++V  +VQ +   G+ML+FLT+FTG VD  HL      T 
Sbjct: 262  VSAAIATEEQSWTLNNLLPGLVVKAQVQKVTPFGLMLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRV 285
            + N     + V A IL V P +R V L+L P  L    P S +    +G + +   V   
Sbjct: 322  FSN-----QAVKACILCVHPRTRVVRLSLRPIFLQPGRPLSRLSCQHLGAVLNDVPVHGF 376

Query: 286  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             +  G +  +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377  FKKAGAIFRLKDGVL---AYARLSHLSDSKNVFSPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
             L+ S  E     + D+KPG VVKG V+ +  +G +V+    ++ L P  H+++  +  P
Sbjct: 434  SLRTSIIEAQYLRYHDIKPGAVVKGTVLTIKPYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406  GKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 465
             KK+ +G E       VK +RI  + K         +++ +   + RL       ++   
Sbjct: 494  EKKYHIGDE-------VKCRRINSSTK---------VVNWFIIGSVRLDAKPARKEL--- 534

Query: 466  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--- 522
                R  +G    A RS   +   C    ++H  QVVK  +++S P+  R+ LSF +   
Sbjct: 535  ----RCTSGRH--AARSAGRVGQAC---VVFH--QVVKVAVLNSEPSKERMLLSFKLLRD 583

Query: 523  -KPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
             +P +        +   + +G LV   V   T + + V V+        +PT HL+DH+ 
Sbjct: 584  PEPKKEPAGHNQKKGKAINVGQLVDVKVLEKTKDGLEVAVLPHNTC-AFLPTSHLSDHVT 642

Query: 576  HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHG 633
            +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P + S IHP  ++ G
Sbjct: 643  NGPLLHHWLQAGDTLHRVLCLSQSEGHILLCRKPALVSAVEGGQDPKNFSEIHPGMLLVG 702

Query: 634  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            +V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R+ 
Sbjct: 703  FVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRML 762

Query: 694  LSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIGSVIEGKVH 749
            LSL+ S C   D +      L +  E++  ++S  S  +   ++ +     G  ++  V 
Sbjct: 763  LSLRLSDCGLGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDLVVQ 822

Query: 750  ES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF 808
            E   D  VV S     ++    + +   G  VESG   +  IL+V   +  V +SL    
Sbjct: 823  EVLEDGSVVFSGGPVPNLVLRASRYHRGGQEVESGQKKKVVILNVDLLKLEVHVSLHQDL 882

Query: 809  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV 868
            +        NR+A+K ++  E       HQ   AIV+ +++++ + SL    H + ++  
Sbjct: 883  V--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVATGHLVAFSLT 924

Query: 869  SDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK----- 922
            S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    R       
Sbjct: 925  SHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPTRKDSETVD 982

Query: 923  --------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 968
                          KK +  +G +V   +  IKP  + +    G  G IH + + DD   
Sbjct: 983  EDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLKDGIIGCIHASHILDDVPE 1042

Query: 969  VVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML----T 1012
                  +  K+G+TVTAR+I      DMK   FL            ELS++PS L    T
Sbjct: 1043 GTSPT-TKLKVGKTVTARVIGGR---DMKTFKFLPISHPRFVRTVPELSVRPSELEDGHT 1098

Query: 1013 VSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1069
                 S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L ++     L
Sbjct: 1099 ALNTDSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVL 1158

Query: 1070 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1129
            +   ++F +G+A+   V+  +  K  LRL L             I    ++    EG++ 
Sbjct: 1159 KHPDKKFRVGQALRATVVGPDSSKAFLRLSL-------------IGPHKLE----EGEVA 1201

Query: 1130 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1189
             GR+ K+     GL V      +G++    L    VSD  S        PL  +   + V
Sbjct: 1202 MGRVVKVTPN-EGLTVSFP---FGKIGTVSL--FHVSDSYSEM------PLEDFVPQKVV 1249

Query: 1190 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1249
            +C +L     V     + LSLR      SS  + +  + V+ P   +  I+D+    +++
Sbjct: 1250 RCYILSAEDNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQLLR 1296

Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVLSVE 1303
            GYV+++   G F  L   +   V L+        SP K+       P GKL+  RVL + 
Sbjct: 1297 GYVRSIQPHGVFFGLGPSV---VGLARYPYVSQHSPSKKALYNKHLPEGKLLTARVLRLN 1353

Query: 1304 PLSKRVEVTLKTSDS 1318
                 VE++    D+
Sbjct: 1354 HQKNLVELSFLPGDT 1368



 Score =  289 bits (740), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 147/331 (44%), Positives = 222/331 (67%), Gaps = 16/331 (4%)

Query: 1470 SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1529
            ++PPL  + D E+ +  +  +Q            +K ++  ++ EK++ E+E+   EE L
Sbjct: 1516 ALPPLAESSDSEEDEKPHQATQ------------KKKSKKERELEKQKAEKELSRIEEAL 1563

Query: 1530 LEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1588
            ++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE 
Sbjct: 1564 MDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQ 1623

Query: 1589 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1648
            EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL
Sbjct: 1624 EKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGEL 1681

Query: 1649 LYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFK 1707
              +M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+
Sbjct: 1682 YNRMLKRFRQEKAVWIKYGAFLLRRSQAGASHCVLQRALECLPSKEHVDVIAKFAQLEFQ 1741

Query: 1708 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1767
             G  +R +++FE  L+ YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PKKMKF
Sbjct: 1742 LGDPERAKAIFENTLTTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKKMKF 1801

Query: 1768 LFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1802 FFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1832



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
            N S +H G +++G +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V 
Sbjct: 690  NFSEIHPGMLLVGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVV 748

Query: 1388 VKILKVDKEKRRISLGMKSS 1407
             K+  VD+EK+R+ L ++ S
Sbjct: 749  AKVTNVDEEKQRMLLSLRLS 768



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 104/209 (49%), Gaps = 22/209 (10%)

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1262
            F V  +LR+++ G    +SS     +   G H  K+E+     +  G V  VT ++G  +
Sbjct: 1165 FRVGQALRATVVG---PDSSKAFLRLSLIGPH--KLEE---GEVAMGRVVKVTPNEGLTV 1216

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
                     V L ++SD Y E P ++F   K+V   +LS E     + ++L++S +   +
Sbjct: 1217 SFPFGKIGTVSLFHVSDSYSEMPLEDFVPQKVVRCYILSAE--DNVLTLSLRSSRTNPET 1274

Query: 1323 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
            +S     EIN++ ++  G ++ G ++ ++ +G+F  +   ++VGL     +S+ H  + +
Sbjct: 1275 KSKVEDPEINSIQDIKEGQLLRGYVRSIQPHGVFFGL-GPSVVGLARYPYVSQ-HSPSKK 1332

Query: 1378 TIYRA----GEKVKVKILKVDKEKRRISL 1402
             +Y      G+ +  ++L+++ +K  + L
Sbjct: 1333 ALYNKHLPEGKLLTARVLRLNHQKNLVEL 1361


>gi|452846030|gb|EME47963.1| hypothetical protein DOTSEDRAFT_147032, partial [Dothistroma
            septosporum NZE10]
          Length = 1780

 Score =  332 bits (852), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 275/920 (29%), Positives = 458/920 (49%), Gaps = 118/920 (12%)

Query: 929  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTAR 986
            +G +V+A I  IK  ++ ++      GR+ ++E  D  D+ N        FK    +  +
Sbjct: 911  LGRVVKARIASIKATQMNVRLADNVQGRVDVSEAFDSWDEINNKAAPLQKFKHNDLIDVK 970

Query: 987  IIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1037
            ++   +  + +         K  ++ELS K S +   E G + L     V  G     +V
Sbjct: 971  VLGIHDARNHRFLPISHRQGKVPVFELSAKKSRV---EAGDEALLGLDSVQPGSTYLAFV 1027

Query: 1038 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1097
                +    + +S +++ ++ ++D + +  +LQ  + RF IG A+   V S++     L 
Sbjct: 1028 NNHGDNCVWVNLSPNVRGRVALMDLSDDVGQLQNVENRFRIGCALRVKVKSVDVSANRLD 1087

Query: 1098 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1157
            L  R  +       V   ND     +  G ++  R++K    +  + VQI   + G V  
Sbjct: 1088 LTARHNESS----EVKTLND-----LKAGMVIPARVTKTTERL--VNVQITDTISGVVPL 1136

Query: 1158 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1217
             EL +          D  Q +P + Y++   V+  VL +    +  F   LSLR S    
Sbjct: 1137 AELSD----------DFEQANP-AQYNKNDIVRACVLAVDVPNKKIF---LSLRPS---- 1178

Query: 1218 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1277
                   LS+ + T    +     L    IV+G++K+VT KG F+ L   +DA V +S+L
Sbjct: 1179 -----KVLSSSLPTTDAQVSDTGSLKVGNIVRGFIKHVTDKGVFVSLGATVDALVRISDL 1233

Query: 1278 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1337
            SD +V+  +    I +LV GR++SV+  +K+V+++LK S     + +   N+ ++  GD 
Sbjct: 1234 SDRFVKDWKSLHEIDQLVKGRIMSVDHATKQVQMSLKQSHV-DGNYTPPLNIGDIKAGDT 1292

Query: 1338 VIGQIKRVESYGLFITIENTN--LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1395
            V G++++VE +G F+ IENT   L GLCH SE++   V+++  +Y  G+ VK K+L VD 
Sbjct: 1293 VTGRVRKVEDFGAFVDIENTQPRLSGLCHRSEVAARRVEDVRKLYSTGDVVKAKVLSVDV 1352

Query: 1396 EKRRISLGMKSSYFKNDAD--------------NLQMSSEEESDEAIEEVGSYNRSSLLE 1441
            E R+ISLG+K+SYF +D +               L  S   E  E  +  G  +    L+
Sbjct: 1353 ENRKISLGLKASYFDDDDEEKDEEESEDEDVETGLVESGGVEVMEGNDAEGGID----LD 1408

Query: 1442 NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD-------NGISQNQG 1494
            N+    QDMD + ED    V+  ++            DDE+P ++       NG   N  
Sbjct: 1409 NNQ---QDMDSDEED----VVDGMD------------DDEEPALEFTSGLKTNGFDWNGS 1449

Query: 1495 HTD---EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNS 1551
              D    A   + + +  A+KK K  +  EI+      L+K  PR+  +FER +   P++
Sbjct: 1450 ALDGNINAAGYESEPDAIARKKRKRNK-PEIKEDLTGDLDKYGPRSVSDFERQLLGQPSN 1508

Query: 1552 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1611
            S +WI+YMAF + ++++++AR IAERA++TI+IRE  EKLN+WVA+ NLE EYG+  +E 
Sbjct: 1509 SLLWIQYMAFQIQLSELDEARRIAERAIRTIHIRETEEKLNVWVAWLNLEVEYGD--DEH 1566

Query: 1612 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI--KKFKHSCKVWLRRVQR 1669
            V +VF+ A Q  D  ++H  L  +Y  + + + AD +  +MI  K F+    VWL     
Sbjct: 1567 VDEVFKEACQVQDSLEMHEKLASIYISSGKLEKADSIYERMIGNKNFRAVPDVWLNYATF 1626

Query: 1670 LL--KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEF--KNGVADRGRSMFEGILSEY 1725
            L+  K      +A++ +A+ S+   KH    +  A LEF  K+G A+RGR++FE IL+E+
Sbjct: 1627 LMSDKNAPGRARALLPKAMQSIRIQKHRDLSADFAALEFKTKHGNAERGRTIFENILAEW 1686

Query: 1726 PKRTDLWSIYLD----------QEIRLGD-VDLIRGLFERAISLSLPPKKMKFLFKKYLE 1774
            PK +  W  ++D           E    D +D  R LFER  +L +  ++ KF+FKK+ E
Sbjct: 1687 PKWSAGWDRFIDLERSRVSKAKDEAEKSDAIDKTRALFERVAALKMKKRRAKFVFKKWFE 1746

Query: 1775 YEKSVGEEERIEYVKQKAME 1794
            +E+  G ++ +  VK  A E
Sbjct: 1747 FEEKEGTDKDMGRVKLLAKE 1766



 Score =  149 bits (377), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 172/745 (23%), Positives = 312/745 (41%), Gaps = 58/745 (7%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDNEIEANEDNL----LPTIF 53
           G V  +  +D+ + LP  L G A       R    ++ +L ++ +  ++      L  +F
Sbjct: 149 GRVTAITGRDIALALPNNLTGFAPILSISERLTSRIERLLASDEKPEDEEDEDVDLKQLF 208

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRK--IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 111
           +VGQ +   +     + K+  K K  I LSL  + +   L  E V     + A V+S+ED
Sbjct: 209 YVGQWLRASITATGTEPKDGSKSKKHIELSLDPAAVNGALREENVVTNSTIQAAVRSVED 268

Query: 112 HGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
           HG ++  GL   S  GF  +  L     +D ++ G +L  +V     + KVV L+ DP  
Sbjct: 269 HGIVMDIGLSESSVKGFASKKALGSAYSLDQIQEGQVLLCLVTGKASSGKVVNLTPDPSK 328

Query: 169 VSKCVTKDLK----------GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 218
            S   T++ K            ++D  +PG  V   +      G+    +     T D+ 
Sbjct: 329 FS-VATREGKDKDKMPFVAEAPTVDAFLPGTAVDVLITETGPKGIAGKIMGMLDVTSDVV 387

Query: 219 H-LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIY 277
           H   + FP  N K  Y    K  ARI+F  P       T +     ++     + +    
Sbjct: 388 HSAASQFPDMNQK--YRVGSKAKARIIFSIPQDDGARKTKSEATELSQP----LALSSTL 441

Query: 278 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--YKEGSCVRVRILG 335
           + +KV  +    G+ L++        A+  IS +++ +V  +     YK  S  +VRI  
Sbjct: 442 EDAKVTSIVADRGIFLELTD---GKKAFAHISQLSDSKVDSISTAGPYKPESTHKVRITA 498

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV------DSFGAIVQFPGGVK 389
           +  ++ +    LK S  +       D+  G VV G V  +         G +V+    + 
Sbjct: 499 YNPVDNIYYVSLKKSVLDQPFLRLEDLPIGGVVTGTVDKLILGGKSGVTGVLVKLSDSIT 558

Query: 390 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYA 447
            L P  H+S+  +  P +KF+ G  +  R+L V +++  + VT KK+LV     + + Y 
Sbjct: 559 GLVPEMHLSDAHLTHPERKFREGYPIKGRILSVDTEKRHVRVTLKKSLVDDSATVWNDYK 618

Query: 448 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 507
           +    + + G I  +  +G  V+FY  V+ + P +E+      +P   + +GQ V  +++
Sbjct: 619 DLQPGMESKGTIVSLLPNGAAVQFYGPVRAWLPVAEMSETFIEKPEKHFRLGQTVTVKVL 678

Query: 508 SSIPASRRINLSFMMKPTRVSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 563
           +  P S+ + ++     T   E     + +  G LVS  V     +++   +      +G
Sbjct: 679 NVKPESQEMKVTCKDSSTFDDEQQSAWNALSGGQLVSATVSEKLADSITAEL--DNGIRG 736

Query: 564 TIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSAQQLPS 620
           TI   H+ D     A      I+ G +   LLVL  +  S  ++LS K S+I  ++    
Sbjct: 737 TIRIGHVIDGPASKAEKELKRIRVGQKLSNLLVLTKQERSHTVVLSNKPSMIEDSKACAL 796

Query: 621 DASHI--HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 678
             S +       VHG+V NI   G +  F   + G  P+++      A  S      Q+V
Sbjct: 797 IKSFVDAREGQKVHGFVRNITPEGVYAEFANGIVGLIPKNQVPADSLAQPSFGLRKDQTV 856

Query: 679 RSNILDVNSETGRITLSLKQSCCSS 703
            + ++  +    R  LS+++   ++
Sbjct: 857 TAYVIGTDGIHERFILSMREQAATN 881



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 142/327 (43%), Gaps = 32/327 (9%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKPGL 144
            L L++VQ G    A+V +  D+   ++   P+  G +   +L+++ G         + G 
Sbjct: 1012 LGLDSVQPGSTYLAFVNNHGDNCVWVNLS-PNVRGRVALMDLSDDVGQLQNVENRFRIGC 1070

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVT-KDLKGISIDLLVPGMMVSTRVQSILENGV 203
             L+  V+S+D +   + L++  +  S+  T  DLK         GM++  RV    E  V
Sbjct: 1071 ALRVKVKSVDVSANRLDLTARHNESSEVKTLNDLKA--------GMVIPARVTKTTERLV 1122

Query: 204  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY-LL 262
             +      +G V +  L + F   N    YN++  V A +L VD  ++ + L+L P  +L
Sbjct: 1123 NVQITDTISGVVPLAELSDDFEQAN-PAQYNKNDIVRACVLAVDVPNKKIFLSLRPSKVL 1181

Query: 263  HNRAPPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEE 315
             +  P +  +V D     KV  + RG        G+ + + +T     A V ISD+++  
Sbjct: 1182 SSSLPTTDAQVSDT-GSLKVGNIVRGFIKHVTDKGVFVSLGAT---VDALVRISDLSDRF 1237

Query: 316  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV---FTHSDVKPGMVVKGKV 372
            V+  +  ++    V+ RI+   H        LK S  +G         D+K G  V G+V
Sbjct: 1238 VKDWKSLHEIDQLVKGRIMSVDHATKQVQMSLKQSHVDGNYTPPLNIGDIKAGDTVTGRV 1297

Query: 373  IAVDSFGAIVQFPGGVKALCPLPHMSE 399
              V+ FGA V        L  L H SE
Sbjct: 1298 RKVEDFGAFVDIENTQPRLSGLCHRSE 1324



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 62/322 (19%)

Query: 1126 GDIVGGRISKIL----SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
            G +V G + K++    SGV G++V++   + G V    L +  ++ P   + EG   P+ 
Sbjct: 528  GGVVTGTVDKLILGGKSGVTGVLVKLSDSITGLVPEMHLSDAHLTHPERKFREGY--PIK 585

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
            G         ++L +    R   HV ++L+ SL   S+T  +D               +D
Sbjct: 586  G---------RILSVDTEKR---HVRVTLKKSLVDDSATVWNDY--------------KD 619

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L P M  +G + ++   G  +     + A + ++ +S+ ++E PEK F +G+ V  +VL+
Sbjct: 620  LQPGMESKGTIVSLLPNGAAVQFYGPVRAWLPVAEMSETFIEKPEKHFRLGQTVTVKVLN 679

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
            V+P S+ ++VT K  DS T    + +  + L  G +V   +   E     IT E  N   
Sbjct: 680  VKPESQEMKVTCK--DSSTFDDEQQSAWNALSGGQLVSATVS--EKLADSITAELDN--- 732

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1421
                          I    R G  +     K +KE +RI +G K S        L ++ +
Sbjct: 733  -------------GIRGTIRIGHVIDGPASKAEKELKRIRVGQKLSNL------LVLTKQ 773

Query: 1422 EESDEAIEEVGSYNRSSLLENS 1443
            E S   +      N+ S++E+S
Sbjct: 774  ERSHTVV----LSNKPSMIEDS 791



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 138/321 (42%), Gaps = 50/321 (15%)

Query: 408  KFKVGAELVFRV--LGVKSKRITVTHK-------KTL--VKSKLAILSSYAEATDRLITH 456
            +F++G  L  +V  + V + R+ +T +       KTL  +K+ + I +   + T+RL+  
Sbjct: 1065 RFRIGCALRVKVKSVDVSANRLDLTARHNESSEVKTLNDLKAGMVIPARVTKTTERLVN- 1123

Query: 457  GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RI 506
                        V+  + + G  P +EL  D      + Y+   +V+           +I
Sbjct: 1124 ------------VQITDTISGVVPLAELSDDFEQANPAQYNKNDIVRACVLAVDVPNKKI 1171

Query: 507  MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
              S+  S+ ++ S      +VS+   +K+G++V G +  VT   V V + A       + 
Sbjct: 1172 FLSLRPSKVLSSSLPTTDAQVSDTGSLKVGNIVRGFIKHVTDKGVFVSLGA--TVDALVR 1229

Query: 567  TEHLADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLPSD 621
               L+D        KS+    +E DQL     + +D+ +  + +S K S ++     P +
Sbjct: 1230 ISDLSDRF--VKDWKSL----HEIDQLVKGRIMSVDHATKQVQMSLKQSHVDGNYTPPLN 1283

Query: 622  ASHIHPNSVVHGYVCNIIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSV 678
               I     V G V  + + G FV       RL+G   RS+    +  D+ K Y  G  V
Sbjct: 1284 IGDIKAGDTVTGRVRKVEDFGAFVDIENTQPRLSGLCHRSEVAARRVEDVRKLYSTGDVV 1343

Query: 679  RSNILDVNSETGRITLSLKQS 699
            ++ +L V+ E  +I+L LK S
Sbjct: 1344 KAKVLSVDVENRKISLGLKAS 1364



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 107/500 (21%), Positives = 198/500 (39%), Gaps = 82/500 (16%)

Query: 356  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM--SEFEI---VKPGKKFK 410
            +   +++  G VVK ++ ++ +    V+    V+    +     S  EI     P +KFK
Sbjct: 903  ISASAEITLGRVVKARIASIKATQMNVRLADNVQGRVDVSEAFDSWDEINNKAAPLQKFK 962

Query: 411  VGAELVFRVLGVKSKR----ITVTHKKTLVKS-KLAILSSYAEATDRLI--------THG 457
                +  +VLG+   R    + ++H++  V   +L+   S  EA D  +           
Sbjct: 963  HNDLIDVKVLGIHDARNHRFLPISHRQGKVPVFELSAKKSRVEAGDEALLGLDSVQPGST 1022

Query: 458  WITKIEKHG--C-FVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIMSSIPA 512
            ++  +  HG  C +V     V+G     +L  D G      + + +G  ++ ++ S   +
Sbjct: 1023 YLAFVNNHGDNCVWVNLSPNVRGRVALMDLSDDVGQLQNVENRFRIGCALRVKVKSVDVS 1082

Query: 513  SRRINLSFMMKPTRVSEDDLVK-LGSLVSGVV---DVVTPNAVVVYVIAKGYSKGTIPTE 568
            + R++L+      R +E   VK L  L +G+V    V      +V V       G +P  
Sbjct: 1083 ANRLDLT-----ARHNESSEVKTLNDLKAGMVIPARVTKTTERLVNVQITDTISGVVPLA 1137

Query: 569  HLADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLP---- 619
             L+D  E A   +      Y  + +     L +D  +  + LS + S + S+  LP    
Sbjct: 1138 ELSDDFEQANPAQ------YNKNDIVRACVLAVDVPNKKIFLSLRPSKVLSSS-LPTTDA 1190

Query: 620  --SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 677
              SD   +   ++V G++ ++ + G FV     +      S   D    D    + + Q 
Sbjct: 1191 QVSDTGSLKVGNIVRGFIKHVTDKGVFVSLGATVDALVRISDLSDRFVKDWKSLHEIDQL 1250

Query: 678  VRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 737
            V+  I+ V+  T ++ +SLKQS     D ++               +   N  ++K    
Sbjct: 1251 VKGRIMSVDHATKQVQMSLKQSHV---DGNY---------------TPPLNIGDIK---- 1288

Query: 738  FIIGSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVE-------SGSVIQAA 789
               G  + G+V +  DFG  V  E     + G     ++A   VE       +G V++A 
Sbjct: 1289 --AGDTVTGRVRKVEDFGAFVDIENTQPRLSGLCHRSEVAARRVEDVRKLYSTGDVVKAK 1346

Query: 790  ILDVAKAERLVDLSLKTVFI 809
            +L V    R + L LK  + 
Sbjct: 1347 VLSVDVENRKISLGLKASYF 1366



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 116/524 (22%), Positives = 206/524 (39%), Gaps = 94/524 (17%)

Query: 929  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN------------ 976
            VGS V   +T I   ++ L       G   I  +++  ++ +E L ++            
Sbjct: 143  VGSSVLGRVTAITGRDIALALPNNLTGFAPILSISERLTSRIERLLASDEKPEDEEDEDV 202

Query: 977  -----FKIGQTVTARIIAKSNKP-DMKKSFLW-ELSIKPSMLTVSEIGSKLLFEECDVSI 1029
                 F +GQ + A I A   +P D  KS    ELS+ P+ +  +         E +V  
Sbjct: 203  DLKQLFYVGQWLRASITATGTEPKDGSKSKKHIELSLDPAAVNGA-------LREENVVT 255

Query: 1030 GQRVTGYVYKVDNEWALLTI-----SRHLKAQLFILDSAYEPSELQEFQRRFHI--GKAV 1082
               +   V  V++   ++ I     S    A    L SAY   ++QE Q    +  GKA 
Sbjct: 256  NSTIQAAVRSVEDHGIVMDIGLSESSVKGFASKKALGSAYSLDQIQEGQVLLCLVTGKAS 315

Query: 1083 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1142
            +G V+++  +     +  R  +D           D M  F+ E   V   +    + V  
Sbjct: 316  SGKVVNLTPDPSKFSVATREGKD----------KDKM-PFVAEAPTVDAFLPG--TAVDV 362

Query: 1143 LVVQIGPH-LYGRVHFTELKNICVSDPLSGYDEGQFDPLS-GYDEGQFVKCKVLEISRTV 1200
            L+ + GP  + G++    +  + V+  +      QF  ++  Y  G   K +++      
Sbjct: 363  LITETGPKGIAGKI----MGMLDVTSDVVHSAASQFPDMNQKYRVGSKAKARII------ 412

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
               F +        DG   T S   +T++  P      +ED     IV         +G 
Sbjct: 413  ---FSIPQD-----DGARKTKSE--ATELSQPLALSSTLEDAKVTSIV-------ADRGI 455

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVES-----PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
            F+ L+    A   +S LSD  V+S     P K     K+   R+ +  P+     V+LK 
Sbjct: 456  FLELTDGKKAFAHISQLSDSKVDSISTAGPYKPESTHKV---RITAYNPVDNIYYVSLK- 511

Query: 1316 SDSRTASQSEINNLSNLHVGDIVIGQIKRV------ESYGLFITIENTNLVGLCHVSELS 1369
               ++        L +L +G +V G + ++         G+ + + ++ + GL     LS
Sbjct: 512  ---KSVLDQPFLRLEDLPIGGVVTGTVDKLILGGKSGVTGVLVKLSDS-ITGLVPEMHLS 567

Query: 1370 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
            + H+ + E  +R G  +K +IL VD EKR + + +K S   + A
Sbjct: 568  DAHLTHPERKFREGYPIKGRILSVDTEKRHVRVTLKKSLVDDSA 611


>gi|149040333|gb|EDL94371.1| programmed cell death protein 11 (predicted) [Rattus norvegicus]
          Length = 964

 Score =  332 bits (850), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 271/924 (29%), Positives = 439/924 (47%), Gaps = 88/924 (9%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
           M++ G V EVNE +LV+ LP GL+G  +  +  D      NE  A E+ L     LP +F
Sbjct: 84  MRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLEDLLRLPELF 143

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
             G LV C+V  LD    E GK+ + LS+    + K LS E ++ GM+LT  V S+EDHG
Sbjct: 144 SPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSAEALRPGMLLTGTVSSLEDHG 201

Query: 114 YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
           Y++  G+     FL      E     N G   K G  L  VV  +     VV LS +   
Sbjct: 202 YLVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGVVSLSVEHSQ 261

Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
           VS     + +  +++ L+PG++V  +VQ + + G+ L+FLT+FTG VD  HL+       
Sbjct: 262 VSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFFTGLVDFMHLE-----PK 316

Query: 229 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
               Y+  + V A IL V P +R V L+L P  LH   P + +   ++G + D + V   
Sbjct: 317 KMGSYSSKQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTVLDDASVEGF 376

Query: 286 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
               G +  +    +   AY  +S +++ +     + +K GS  R RI+ +  ++ LA  
Sbjct: 377 FEKAGAIFRLRDGVL---AYARLSHLSDSKKAFSAEAFKLGSTHRCRIIDYSQMDELALL 433

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
            L+ S        + D+K G +VKGKV+A+  FG +V+    ++ L P  H+++  +  P
Sbjct: 434 SLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNP 493

Query: 406 GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
            KKF  G E+  RVL    ++K++ +T KKTLV SKL  ++ Y +A   L THG I +++
Sbjct: 494 EKKFNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEDAKPGLQTHGVIIRVK 553

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
            +GC V+FYN VQG  P+ EL      +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554 DYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLL 613

Query: 524 PTRVSEDDLVK----------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                +D+ VK           G LV   V   T N + V ++        +PT HL+DH
Sbjct: 614 SGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNIP-AFLPTPHLSDH 672

Query: 574 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 633
           + +  ++   ++                               Q P   S I P  ++ G
Sbjct: 673 VANGPLLHHWLQ--------------------------TVEGGQDPKSLSEIQPGMLLIG 706

Query: 634 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
           +V +I + G FV+F   L+G +P++   D      S+ +  GQ+V + + +V+    R+ 
Sbjct: 707 FVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRML 766

Query: 694 LSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVIEGKVH 749
           LSL+ S CS   S   SF+     LEE   +    S  +   ++ +     G V++  V 
Sbjct: 767 LSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMVLDAMVQ 826

Query: 750 ESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF 808
           E  + G VV       D+    + +  AG  +E G   +  +L V   +  V +SL    
Sbjct: 827 EVLENGSVVFGGGPVPDLILRASRYHRAGQELEPGQKKKVVVLHVDALKLEVHVSLHQDL 886

Query: 809 IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV 868
           ++R           K ++ R+ S+    HQ    IV+ ++E++ V SL E  H + ++ +
Sbjct: 887 VNR-----------KARKLRKNSR----HQ---GIVQHLEESFAVASLVETGHLVAFSLI 928

Query: 869 SDYN-TQKFPQKQFLNGQSVIATV 891
           S  N T  F  ++   GQ V  T+
Sbjct: 929 SHLNDTFHFDSEKLRVGQGVCLTL 952



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 2/168 (1%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            + +D+    IV+G V  +   G  + +  ++   V   +L+D  +++PEK+F  G  V  
Sbjct: 446  RYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKC 505

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            RVL  +P +K++ +TLK +   T+    I    +   G    G I RV+ YG  +   N 
Sbjct: 506  RVLLCDPEAKKLIMTLKKT-LVTSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYN- 563

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            ++ GL    ELS  H+ + E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 564  DVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK 611



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 102/257 (39%), Gaps = 35/257 (13%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            I  G IV G++  +     G++V++G  + G V    L +I + +P   ++ G       
Sbjct: 450  IKTGTIVKGKVLALKPF--GMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTG------- 500

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
             DE   VKC+VL      +      ++L+ +L              V +    +   ED 
Sbjct: 501  -DE---VKCRVLLCDPEAKKLI---MTLKKTL--------------VTSKLPAITCYEDA 539

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
             P +   G +  V   GC +     +   V    LS  ++  PE+ F  G++V   VL+ 
Sbjct: 540  KPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNC 599

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNL----SNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            EP  +R+ ++ K           + N     S ++ G +V  ++      GL + I   N
Sbjct: 600  EPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHN 659

Query: 1359 LVGLCHVSELSEDHVDN 1375
            +        LS DHV N
Sbjct: 660  IPAFLPTPHLS-DHVAN 675



 Score = 44.7 bits (104), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 47/85 (55%)

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            G+  + + ++ P M++ G+VK++   G F+     L      + +SD +V +P + F  G
Sbjct: 689  GQDPKSLSEIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEG 748

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSD 1317
            + V  +V +V+   +R+ ++L+ SD
Sbjct: 749  QTVVAKVTNVDESKQRMLLSLRLSD 773


>gi|301614745|ref|XP_002936843.1| PREDICTED: protein RRP5 homolog [Xenopus (Silurana) tropicalis]
          Length = 1818

 Score =  327 bits (839), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 342/1395 (24%), Positives = 633/1395 (45%), Gaps = 168/1395 (12%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLP--TIF 53
            M   G V +  + +L + LP  L G  +A    +A   ++  +++ ++  + L P   ++
Sbjct: 82   MMFLGCVKQAKDFELAVSLPYCLTGYIQATNICEAYTKLIGEQVKKDDPMEALTPLSELY 141

Query: 54   HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
              G LV C +  L+      G   + LS+    + K L+  +++ GM+++  V S+EDHG
Sbjct: 142  SPGMLVRCAISSLETTTS--GCNSVKLSINPKHVNKALTTGSLKAGMLVSGCVSSVEDHG 199

Query: 114  YILHFGLPSFTGFLPRNNLA-----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            Y++  G+     FLPR            G  ++ G  L  V++ +    ++V LS   + 
Sbjct: 200  YLVDIGVTGSKAFLPRQKAQLFLNQAGKGPLLRIGQYLNCVIQEVKNEGRIVRLSITQND 259

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            V+  +    +  +++ L+PG+++  +++ + ++ + LSFL+ +TG VD  H +       
Sbjct: 260  VTGALATMEQNWTLNNLLPGLVLKAQIEKVTQSSITLSFLSSYTGFVDFLHFE-----PK 314

Query: 229  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRV 285
                Y + ++V A IL++DP+++++ LTL         P   +    VG + +   V  +
Sbjct: 315  KIGSYKEGQEVKACILWLDPSTKSIRLTLRQCFQQPGNPLPQLTSDWVGSVLENCMVQTL 374

Query: 286  DRGLGLL--LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 343
             R  G +  LD  +   +    ++ S   + E+      +K+G+  + RI  F  +E + 
Sbjct: 375  VRNAGAIFELDGGNLGFAFKHNLSASKHPDNEI------FKKGTAHKGRIKEFSPMEEMH 428

Query: 344  TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 403
               L+      L   H D++ G V++G + ++++ G +V+    +  L P  H ++  + 
Sbjct: 429  FLSLREKMITDLFLRHEDIQAGQVLEGTIQSLEAVGLVVKITDHLTGLVPKLHFADVLLK 488

Query: 404  KPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 461
             P KK+ +G ++  +VL V    +++ +T KKTL+KSKL I++S+ +A   LITHG+I  
Sbjct: 489  HPEKKYIIGNKIKCKVLTVITSERKLILTRKKTLMKSKLPIIASFDDAQPGLITHGFIVA 548

Query: 462  IEKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
            I+ +GC V+F+N VQG APR ELG L         ++ GQV+K R++   P ++++ LSF
Sbjct: 549  IKDYGCIVKFFNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVRVLDCNPQTQKLLLSF 608

Query: 521  -------------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
                          +K T+  + D   +G +V   V   T   V V ++ +  S   IP 
Sbjct: 609  RITEEGETEQEQRYLKKTKAVKLD---VGKVVDTRVVSKTDKGVNVLILPE-ESPAFIPK 664

Query: 568  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHI 625
             HL+DH+ +  ++   ++ G     ++ L     + +L+ K  LI+S ++       S +
Sbjct: 665  MHLSDHISNCELLWHALEEGDNIPGVMCLSTFKGHHILTKKAVLISSFEKGSCVKVISEV 724

Query: 626  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
                 + G+V +I+  G FV F   L G  P+S+  D    ++S   + GQ+V + ++  
Sbjct: 725  QTGMHLTGFVKSIMPYGAFVEFPYGLFGLVPKSEISDKFVTNISDHLFEGQTVLAKVIKT 784

Query: 686  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ------SSKHNGSE----LKWV 735
            + E  R  L+LK S C+ +D S  +   LL +  + LQ      S K +  +        
Sbjct: 785  DEEKQRFLLTLKMSECAPSDCS-AEGLLLLSQCFSELQLLKGLLSRKGDPEDELSIYTLT 843

Query: 736  EGFIIGSVIE-----GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAI 790
             G  +  V+E     G VH S   G +   +  S      TH+ +   T  +G  ++A +
Sbjct: 844  SGQKLTLVVENAEENGPVHFST--GSITGAQTVS-----ATHNNIGDETPIAGQKVKAVV 896

Query: 791  LDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN 850
            L V   +  V +SL    +               K+K+   K    H   +A V  V E 
Sbjct: 897  LHVDLLKLHVYVSLNEALL---------------KKKKNVPKMNSSH---SADVLHVAEE 938

Query: 851  YLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 909
            + V+SL    H       S  N T  F  ++   G+++  TV+   +S     LLL ++ 
Sbjct: 939  FAVVSLTGPAHLAAVPMSSHLNDTFHFESEKLKVGETI--TVILKATSVNEQGLLLAVQN 996

Query: 910  ISETETSSSKRAKKKS----------SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 959
             S  +TS ++   K+S             VG LV   +  IKP ++ +       G IH+
Sbjct: 997  KSALKTSKNQGQTKQSDVKTSGFMAHGLKVGDLVSGTVKSIKPTQVIVSINDNVCGFIHV 1056

Query: 960  TEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK------PDMKKSFLWELSIKPS 1009
            +++ +D + +     S     Q VT R+I     KS++      PD   S L ELSI P 
Sbjct: 1057 SQITED-TPLGSFPTSKLSPKQEVTGRVIGGREVKSHRYLPITHPDFIHS-LPELSILPG 1114

Query: 1010 MLTVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
            ++       K    +   + G++VT Y+  Y  + ++  + I+  ++ ++ +L  +  P 
Sbjct: 1115 LINKDNKVPKPRPLKT-FTPGEKVTCYINKYNTEKKYLEVEITPQIRGRIELLLLSQTPK 1173

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
             L+  ++ F  G++++  V+  +   K L L L     GI               + EG 
Sbjct: 1174 NLKRPEKLFKNGQSLSATVVGPDATHKHLCLSL----TGIYS-------------LEEGS 1216

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            +    ++K++ G  GL + +     G      L +         Y E   D    +  G+
Sbjct: 1217 VTMASVTKVVKG-SGLTLSLPFGKTGEASIFHLHD--------NYTEASLDK---FTPGK 1264

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             V+C +L +S+T++ +      ++S ++  +S ++ D         K +   + L    +
Sbjct: 1265 IVRCAILSVSKTIKVSL-----MQSKINQQASKSTDD---------KEITSFDSLEEGQL 1310

Query: 1248 VQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLSDGYV---ESPEKEFPIGKLVAGRVLSVE 1303
            V G+V  VT +KG F  LS  +   +   N++  +V    +  K  P G L+  +VLSV+
Sbjct: 1311 VTGFVSAVTQNKGVFFRLSSSIVGHIQFRNITSYFVYDTSAYSKYIPEGTLLTAKVLSVD 1370

Query: 1304 PLSKRVEVTLKTSDS 1318
            P  K VE++L  SD+
Sbjct: 1371 PEQKHVELSLLPSDT 1385



 Score =  285 bits (728), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 141/288 (48%), Positives = 202/288 (70%), Gaps = 4/288 (1%)

Query: 1513 KEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1571
            +EK+E E+E+   E  L +    P++ D+F+RLV SSP+SS +W++YMAF L   ++EKA
Sbjct: 1526 REKKEAEKELSKKEAALQDSGRQPQSADDFDRLVISSPDSSILWLQYMAFHLHATEIEKA 1585

Query: 1572 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1631
            R +AERAL+TI+ REE EKLN+WVA  NLEN YG   EE++VK F+RA+QY +P KV+  
Sbjct: 1586 RVVAERALKTISFREEQEKLNVWVALLNLENMYGT--EESLVKAFERAVQYNEPLKVYQQ 1643

Query: 1632 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLP 1690
            L  +Y ++E+ K A++L   M+K+F+    VW++    LLKQ Q +G   ++QRAL SLP
Sbjct: 1644 LADIYVKSEKFKQAEDLYNTMLKRFRQEKSVWIKFATFLLKQGQGDGTHRLLQRALKSLP 1703

Query: 1691 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1750
               H+  IS+ A LEF+ G ++R +++FE  LS YPKRTDLWS+Y+D  ++ G    +R 
Sbjct: 1704 EKDHVDVISKFAQLEFQLGDSERAKALFESTLSSYPKRTDLWSVYIDMMVKHGSQREVRD 1763

Query: 1751 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            +FER I LSL  K++KF FK+YLEYEK  G  E ++ VK+KA++YVES
Sbjct: 1764 IFERVIHLSLAAKRIKFFFKRYLEYEKKHGSAESVQAVKEKALQYVES 1811



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            +S +  G  + G +K +  YG F+      L GL   SE+S+  V NI      G+ V  
Sbjct: 721  ISEVQTGMHLTGFVKSIMPYGAFVEFP-YGLFGLVPKSEISDKFVTNISDHLFEGQTVLA 779

Query: 1389 KILKVDKEKRRISLGMKSS 1407
            K++K D+EK+R  L +K S
Sbjct: 780  KVIKTDEEKQRFLLTLKMS 798



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 31/240 (12%)

Query: 875  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 934
            K P+K F NGQS+ ATV+     +T   L L L  I               S + GS+  
Sbjct: 1176 KRPEKLFKNGQSLSATVVG--PDATHKHLCLSLTGIY--------------SLEEGSVTM 1219

Query: 935  AEITEI-KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IAKS 991
            A +T++ K   L L    G  G   I  ++D   N  E     F  G+ V   I  ++K+
Sbjct: 1220 ASVTKVVKGSGLTLSLPFGKTGEASIFHLHD---NYTEASLDKFTPGKIVRCAILSVSKT 1276

Query: 992  NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV-DNEWALLTIS 1050
             K  + +S + + + K +     EI S    EE     GQ VTG+V  V  N+     +S
Sbjct: 1277 IKVSLMQSKINQQASKST--DDKEITSFDSLEE-----GQLVTGFVSAVTQNKGVFFRLS 1329

Query: 1051 RHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1109
              +   + F   ++Y   +   + +    G  +T  VLS++ E+K + L L P   G  D
Sbjct: 1330 SSIVGHIQFRNITSYFVYDTSAYSKYIPEGTLLTAKVLSVDPEQKHVELSLLPSDTGKPD 1389


>gi|154274011|ref|XP_001537857.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415465|gb|EDN10818.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 566

 Score =  325 bits (832), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 198/564 (35%), Positives = 319/564 (56%), Gaps = 52/564 (9%)

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
             +  I  +  N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +L
Sbjct: 17   EISSISQIKVNDIVRGFVRRVADNGLFVTLGHNVIAYVRISDLSDSYLKEWQNEFQVNQL 76

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            V GRV+  +  S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I
Sbjct: 77   VRGRVILADAESNKLQMSLKESVLDPNYKTPIT-IKDLKRGQTVTGKVRNVEEFGAFIVI 135

Query: 1355 ENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
            + T NL GLCH +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+  
Sbjct: 136  DGTANLSGLCHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKD-- 193

Query: 1414 DNLQMSSEEESD-EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVP 1472
                  S++ESD E ++       S   ++      DMD+E E G  + +  ++   ++ 
Sbjct: 194  ------SDDESDGENVQGESEEIVSESEDDG-----DMDLELESGNDISMGGVDLEDTM- 241

Query: 1473 PLEVNLDDEQPDMDNGISQNQGHTDEAKT-------IDEKNNRHAKKKEKEERE------ 1519
                N D+ + D  +G  Q  G  D   T        D   N      E  E +      
Sbjct: 242  ----NGDNSESDSSDGDVQMTGTKDAGITGGLVTSGFDWNGNNTIGSDEDNESDSDSDNK 297

Query: 1520 ----------QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVE 1569
                      QEI+      L+ + P++  ++ERL+   PNSSF+W+KYMAF L +++V+
Sbjct: 298  AAVKKKKRRKQEIQVDRTGDLDTNGPQSVADYERLLLGEPNSSFLWLKYMAFQLELSEVD 357

Query: 1570 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVH 1629
            KAR IAERAL++I+I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H
Sbjct: 358  KAREIAERALRSISIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIH 415

Query: 1630 LALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRAL 1686
              L  +Y ++ ++  ADEL   ++ KKF  S K++L     L     + E  +A++ RA+
Sbjct: 416  ERLTSIYIQSGKHDKADELFQAILKKKFTQSPKIYLNFATFLFDTLAEPERGRALLPRAI 475

Query: 1687 LSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
             SLP H H+   S+   LEF+  NG  +RGR++FEG++S +PKR DLW++ LD EI+ GD
Sbjct: 476  QSLPTHTHVDITSKFGQLEFRSPNGDVERGRTIFEGLISSFPKRVDLWNVLLDLEIKNGD 535

Query: 1745 VDLIRGLF-ERAISLSLPPKKMKF 1767
            ++ +RGLF +R     +P ++ + 
Sbjct: 536  MEQVRGLFLKRFWGWDIPLRRTRL 559



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 22/181 (12%)

Query: 269 SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS 327
           S +KV DI  +  V RV D GL + L       +  AYV ISD+++  +++ + +++   
Sbjct: 22  SQIKVNDIV-RGFVRRVADNGLFVTL-----GHNVIAYVRISDLSDSYLKEWQNEFQVNQ 75

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGMVVKGKVIAVDSFGA 380
            VR R++    L    +  L+ S  E ++        T  D+K G  V GKV  V+ FGA
Sbjct: 76  LVRGRVI----LADAESNKLQMSLKESVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGA 131

Query: 381 IVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 436
            +   G   +  LC    M+E ++    K F+ G  +  +++ +    +RI++  K +  
Sbjct: 132 FIVIDGTANLSGLCHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYF 191

Query: 437 K 437
           K
Sbjct: 192 K 192



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 31/197 (15%)

Query: 620 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
           S  S I  N +V G+V  + + G FV     +  +   S   D    +    + V Q VR
Sbjct: 19  SSISQIKVNDIVRGFVRRVADNGLFVTLGHNVIAYVRISDLSDSYLKEWQNEFQVNQLVR 78

Query: 680 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 739
             ++  ++E+ ++ +SLK+S         +  ++     I  L+                
Sbjct: 79  GRVILADAESNKLQMSLKESV--------LDPNYKTPITIKDLKR--------------- 115

Query: 740 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 792
            G  + GKV    +FG  +  +  +++ G     ++A   VE        G +++A I+ 
Sbjct: 116 -GQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVEDARKLFEKGDIVKAKIVK 174

Query: 793 VAKAERLVDLSLKTVFI 809
           +   +  + L LK  + 
Sbjct: 175 IDLNKERISLGLKASYF 191


>gi|108742058|gb|AAI17595.1| Pdcd11 protein [Danio rerio]
          Length = 1431

 Score =  323 bits (828), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 335/1363 (24%), Positives = 632/1363 (46%), Gaps = 139/1363 (10%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE--DNLLP--TIFHV 55
            + G V EV++ ++V+ LP GL G   +    DA   IL+++++ ++  + ++P   +F  
Sbjct: 81   MLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAYTNILNDKLDTDDGLEEVVPLSKLFTP 140

Query: 56   GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
            G L+ C+V  LD  K+  G   + LS+    + K L+   ++  M L+  V+S+EDHGY+
Sbjct: 141  GMLIRCVVSSLDSAKE--GHISLKLSINPKDVNKALNSVALKPAMTLSGCVESVEDHGYL 198

Query: 116  LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 175
            +  G+     FLP+   + +S  D+  G  +  ++  +  + +VV LS +P  + K   +
Sbjct: 199  VDIGIGGTKAFLPKK--STSSKQDLYVGQYVLVLIEDVKDSGRVVRLSQNPQALVKACAE 256

Query: 176  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 235
              +G ++D L+PG+++   V+ +  +G++++FL+ FTG VD  HL     +T     Y++
Sbjct: 257  TKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLSSFTGVVDFLHLDEDKEST-----YSK 311

Query: 236  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV--------KVGDIYDQSKVVRVDR 287
             +++ ARIL+V P++R VGL+L  +LL    PP           +VG++    ++  +  
Sbjct: 312  GQEILARILYVQPSTRQVGLSLRSHLL----PPGGAVLDLHFSERVGEVVQGCQMTSLHH 367

Query: 288  GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV-RILGFRHLEGLATGI 346
              G L+ +      + A+V   ++ +E   +L+  +       + RI+ +  +E +    
Sbjct: 368  YSGALMKMLD---GSRAFVH-RNLLKEPKEELDTNHLMSQTQHILRIINYSPIEQIYQAT 423

Query: 347  LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 406
            L+ S+ E   F+  D+K G +V+G V  +   G  V+    ++ + P  H+++  +  P 
Sbjct: 424  LRWSSIETPFFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPE 483

Query: 407  KKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
            KKF  G ++  RVL V++++  + +T KK LV+S L I  SY++A    I+HG++  I++
Sbjct: 484  KKFYPGLKVKCRVLSVEAQKKLLILTRKKALVESTLPIFQSYSDARPGRISHGFVVCIKE 543

Query: 465  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM-MK 523
             GC VRFY  V+G  P  EL  +    P  ++ VGQVVK +++      + + LSF  + 
Sbjct: 544  FGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKSVT 603

Query: 524  PTRVSEDDLVKLGSLVSGVVDVVTP----NAVVVYVIAKGYSKGTIPTEHLADHLEHATV 579
               V E+ + K   +V  +VD        N + V +I +   +  +PT HL+DH+ +   
Sbjct: 604  EEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEVSIIPEEV-QAFLPTTHLSDHVTNCLP 662

Query: 580  MKSVIKPGYEFDQLLVLDN-ESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVC 636
            +   ++ G     L+ L N +   ++L+ K  L    +   +P + S +     + G+V 
Sbjct: 663  LWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLKAYIEDGAVPKNFSELQVGMQMVGWVK 722

Query: 637  NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
            NI+  G F+ F   + G AP +   D    + S  + + Q+V + + +++ E     +SL
Sbjct: 723  NIMPYGVFISFPYGVFGLAPIANMGDQFIKETSGIFDIDQTVVAKVTNLDEEKQGFLVSL 782

Query: 697  KQSCCSSTDASFMQEHFL-LEEK--IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 753
            K S  S ++  F       L+E+  I+ +++ + +   L  +    +G  ++  V ++ +
Sbjct: 783  KLSELSLSENEFHTRLIQGLKERRNISEMRAGRGDSDVLWKLSALTVGDQMKMIVGDTTE 842

Query: 754  FG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
             G V+++ ++ S V    + +   G  +  G  + A IL +   +  V +SL+       
Sbjct: 843  DGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKLNAVILHIDFVKSQVHVSLR------- 895

Query: 813  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 872
                     +   +K E  KD        A V+   +++ V+SL   +    + +    N
Sbjct: 896  --------PKLNIKKEELEKD----ARFTAKVQFADKDFAVVSLATTSDLTFFPTRPHLN 943

Query: 873  TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSL 932
            +  F  K+F  G  +   V        AG  L     IS   +++     K +   +G L
Sbjct: 944  S-IFDSKKFSVGSCLDVKVDDPNCEDLAGFPL-----ISYQSSNAKHEQHKPNEERLGEL 997

Query: 933  VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS- 991
            ++  + ++K L + +    G  GR+H++++  +  ++     S  K+G  + AR+I    
Sbjct: 998  MKVTVKKLKALCVLVNLPSGNTGRVHVSQIL-EFPDIGSCPTSVLKVGMEMEARVIGGRA 1056

Query: 992  ---------NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDN 1042
                     + PD   S + ELS   S L VS++ +KL         G  +  +  K   
Sbjct: 1057 VRAHNFLAISHPDYNIS-IPELSFLESKLKVSDMVNKLE----KYKPGDDIICFPSKYIK 1111

Query: 1043 EWALLTISRHLKAQLF----ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1098
            +  LL +  H+K  +     +L    +    +  QR F  G+A++  V+S++ +K     
Sbjct: 1112 KEQLLEV--HVKPDIMGAVPLLAMCNKLGLSKHPQRLFKPGQALSAKVVSVDPKK----- 1164

Query: 1099 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1158
               P Q  +S          M T           + KI     GL++ +     G  H T
Sbjct: 1165 ---PIQFSLSLTGTHKLEPGMNTL--------AMVQKIQPH-KGLMLALPYENTGLAHLT 1212

Query: 1159 ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1218
            +L +         Y E    PL  Y EGQ ++C V+E     +      +SLR S     
Sbjct: 1213 DLSD--------SYTE---KPLESYKEGQIIRCHVIE-----QKIKEFNVSLRPS---RL 1253

Query: 1219 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1278
            + +  D+  D +     ++ I D+     ++GYV +V  +G F+ LSR +  +VL  N +
Sbjct: 1254 NKDKHDIVEDPE-----IQSIADIKEGQSIRGYVSSVNDQGIFLRLSRTITGRVLFQNAT 1308

Query: 1279 DGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
              Y+  P+   K      LVA +VLSV+  +  V ++L + D+
Sbjct: 1309 KYYMNDPKVLIKHVGQNALVAAKVLSVDSENLHVNLSLLSKDT 1351



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 2/167 (1%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            +D+    IV+G V ++   G ++ +   +   +   +L+D  +++PEK+F  G  V  RV
Sbjct: 437  QDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRV 496

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
            LSVE   K + +T K +    ++     + S+   G I  G +  ++ +G  +     ++
Sbjct: 497  LSVEAQKKLLILTRKKALVE-STLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYE-DV 554

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
             GL  + EL+ + V N E ++  G+ VKVK+LK D+EK+ + L  KS
Sbjct: 555  KGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKS 601



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 111/513 (21%), Positives = 208/513 (40%), Gaps = 78/513 (15%)

Query: 884  GQSVIATVMALPSSSTAGRL----LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 939
            GQ V+  +  +  S    RL      L+KA +ET     K+     +   G L+   +  
Sbjct: 224  GQYVLVLIEDVKDSGRVVRLSQNPQALVKACAET-----KQGWTLDNLLPGLLIHGCVKR 278

Query: 940  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 999
            + P  L + F   F G +    +++DK        S +  GQ + ARI+    +P  ++ 
Sbjct: 279  VTPHGLIVTFLSSFTGVVDFLHLDEDKE-------STYSKGQEILARILYV--QPSTRQ- 328

Query: 1000 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1059
                LS++  +L        L F E    +G+ V G          + ++  +  A + +
Sbjct: 329  --VGLSLRSHLLPPGGAVLDLHFSE---RVGEVVQG--------CQMTSLHHYSGALMKM 375

Query: 1060 LDSA---YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1116
            LD +      + L+E +         T H++S  + + +LR++     + I   T+  S+
Sbjct: 376  LDGSRAFVHRNLLKEPKEELD-----TNHLMS--QTQHILRIINYSPIEQIYQATLRWSS 428

Query: 1117 DNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
                 F    I  G IV G ++ +     G+ V+IG H+ G +    L ++ + +P    
Sbjct: 429  IETPFFSCQDIKVGQIVEGTVTDLQKH--GVYVRIGEHIRGMIPRIHLADVTLKNP---- 482

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
             E +F P      G  VKC+VL +    +      L+ + +L              V++ 
Sbjct: 483  -EKKFYP------GLKVKCRVLSVEAQKKLLI---LTRKKAL--------------VEST 518

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
                +   D  P  I  G+V  +   GC +     +   V +  L+   V +PE+ F +G
Sbjct: 519  LPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVG 578

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            ++V  +VL  +   K + ++ K+       + +I    +  VG +V  ++ R    GL +
Sbjct: 579  QVVKVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKF-DFIVGKMVDARVCRKVLNGLEV 637

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1385
            +I    +      + LS DHV N   ++ A E+
Sbjct: 638  SIIPEEVQAFLPTTHLS-DHVTNCLPLWMALEE 669



 Score = 44.3 bits (103), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 153/388 (39%), Gaps = 55/388 (14%)

Query: 1022 FEEC-DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1080
            F  C D+ +GQ V G V  +      + I  H++  +  +  A     L+  +++F+ G 
Sbjct: 433  FFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLA--DVTLKNPEKKFYPGL 490

Query: 1081 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK---IL 1137
             V   VLS+  +KKLL L  +     + + T+ I       F    D   GRIS    + 
Sbjct: 491  KVKCRVLSVEAQKKLLILTRK---KALVESTLPI-------FQSYSDARPGRISHGFVVC 540

Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
                G +V+    + G V   EL    V++P    +E  F        GQ VK KVL+  
Sbjct: 541  IKEFGCIVRFYEDVKGLVPMQELTTETVTNP----EELFF-------VGQVVKVKVLKCD 589

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1257
               +    + LS +S              T+ D   + + K + +   M+     + V +
Sbjct: 590  EEKK---MLRLSFKSV-------------TEEDVREEQIAKFDFIVGKMVDARVCRKVLN 633

Query: 1258 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI------GKLVAGRVLSVEPLSKRVEV 1311
                 ++  ++ A +  ++LSD          P+      G  +   +       K + +
Sbjct: 634  GLEVSIIPEEVQAFLPTTHLSDHVTNC----LPLWMALEEGDTICNLMCLTNYKKKGIVL 689

Query: 1312 TLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            T K           +  N S L VG  ++G +K +  YG+FI+     + GL  ++ + +
Sbjct: 690  TKKPHLKAYIEDGAVPKNFSELQVGMQMVGWVKNIMPYGVFISFP-YGVFGLAPIANMGD 748

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKR 1398
              +     I+   + V  K+  +D+EK+
Sbjct: 749  QFIKETSGIFDIDQTVVAKVTNLDEEKQ 776



 Score = 43.9 bits (102), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 54/295 (18%)

Query: 1153 GRVHFTELKNIC------VSDPLSGYDEG--QFDPLSG-YDEGQFVKCKVLEISRTVRGT 1203
            G V +  + NIC      ++D L   D+G  +  PLS  +  G  ++C V  +     G 
Sbjct: 100  GLVGYLPICNICDAYTNILNDKLD-TDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKEG- 157

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
             H+ L L        S N  D++  +++          L P M + G V++V   G  + 
Sbjct: 158  -HISLKL--------SINPKDVNKALNSVA--------LKPAMTLSGCVESVEDHGYLVD 200

Query: 1264 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV---------AGRVLSVEPLSKRVEVTLK 1314
            +      K  L   S     S +++  +G+ V         +GRV+    LS+  +  +K
Sbjct: 201  IGIG-GTKAFLPKKS----TSSKQDLYVGQYVLVLIEDVKDSGRVVR---LSQNPQALVK 252

Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
                  A   +   L NL  G ++ G +KRV  +GL +T   ++  G+     L ED   
Sbjct: 253  AC----AETKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFL-SSFTGVVDFLHLDEDK-- 305

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1429
              E+ Y  G+++  +IL V    R++ L ++S         L +   E   E ++
Sbjct: 306  --ESTYSKGQEILARILYVQPSTRQVGLSLRSHLLPPGGAVLDLHFSERVGEVVQ 358


>gi|169844731|ref|XP_001829086.1| U3 snoRNP-associated protein Rrp5 [Coprinopsis cinerea okayama7#130]
 gi|116509826|gb|EAU92721.1| U3 snoRNP-associated protein Rrp5 [Coprinopsis cinerea okayama7#130]
          Length = 1462

 Score =  322 bits (825), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 209/598 (34%), Positives = 329/598 (55%), Gaps = 36/598 (6%)

Query: 1230 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1289
            D   + + ++ DL     V+G+VKN+ ++G F+ + R +DA+V +  L D YV+  +  F
Sbjct: 870  DVTDREISELSDLQVGDTVRGFVKNIANQGLFVTIGRGIDARVQIRELFDEYVKDWKPRF 929

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1349
               +LV GRVLS++  + +VE+T K+ D     +S  + +     G  + G IKR+E YG
Sbjct: 930  KERQLVKGRVLSIDVDNNQVELTFKSGDLSREKKSLKDTVKE---GQKISGVIKRIEHYG 986

Query: 1350 LFITIENTNLVGLCHVSELSED-HVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMKS 1406
            LFI I+ T L GLCH ++LS++   D  E +  +R G+ VK  ++    EK RISL +K 
Sbjct: 987  LFIEIKGTKLTGLCHKTQLSDNPDADVAEALRQFRVGDLVKAAVIA--SEKGRISLSLKP 1044

Query: 1407 SYFKNDADNLQMSSEEESDEAIEEVG---------------SYNRSSLLENSSVAVQDMD 1451
            S F           +    EA E  G                   S   E S      M 
Sbjct: 1045 SLFGEGDFEEDEEEDGSQAEAPESFGVITDDESEGEEEGEHQEGPSDKDEASDSDDDAMQ 1104

Query: 1452 MESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD-----NGISQNQGHTDEAKTIDEKN 1506
            ++ +D     LA     A+ P          P +          QNQ   DE++  +  +
Sbjct: 1105 VDLDDTS---LAMPTPSATKPSQSQQPSTSAPSLTLSGGFQWFDQNQESGDESEADESSD 1161

Query: 1507 NRH--AKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1564
            + H    KK +++R++EI+      +    P +  +FERL+  SPN S++WI+YM+F L 
Sbjct: 1162 DEHEDGSKKRRKKRKKEIQQDLTADMHTKLPDSNSDFERLLLGSPNFSYLWIQYMSFQLQ 1221

Query: 1565 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1624
            +++V+KAR IA+RA+QTIN REE E+LN+W+A  NLEN YG   EE++   F+ A +  D
Sbjct: 1222 ISEVDKAREIAKRAIQTINFREEQERLNVWIALLNLENVYGT--EESLEATFKDAARAND 1279

Query: 1625 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQ 1683
             K +HL L  +++++ + + A++   +  KKF  SCKVW    +  LK  + E  + ++ 
Sbjct: 1280 SKTIHLRLAAIFDQSGKPEKAEQQFQRTCKKFGKSCKVWTLFSEHYLKLGKLEESRKLLP 1339

Query: 1684 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1743
            R+L SL + KH+K IS+ A LE+K G  +RGR++FEGI+  +PKR DLWS+Y+D E    
Sbjct: 1340 RSLQSLEKRKHLKTISRFAQLEYKLGEPERGRTLFEGIVDSHPKRWDLWSVYIDMEGVQQ 1399

Query: 1744 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            ++  IR LFER ++L +   K K  FKK+L+ EK +G++E +E VK+KA+E+ +   A
Sbjct: 1400 NIPAIRNLFERVLTLKMTSHKAKSFFKKWLDLEKRLGDDEGVENVKRKAVEWTQKAAA 1457



 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 181/693 (26%), Positives = 314/693 (45%), Gaps = 59/693 (8%)

Query: 49  LPTIFHVGQLVSCIVLQ-----------LDDDKKEIGK--RKIWLSLRLSLLYKGLSLET 95
           L  +F +GQ V  +V             L   + E+ K  +++ LSL   L+ +G+ ++ 
Sbjct: 186 LGQMFAIGQYVRAVVTATFQGGASDPSGLYRSRDELAKLCKRVELSLSPDLVNEGVRVDD 245

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSID 154
           ++ G  LTA VKS+EDHGYIL  G+P+  GFL   +  E  G   +  G L    V  + 
Sbjct: 246 LKSGFTLTAAVKSVEDHGYILDLGIPNADGFLSFKDAKEVEGSSKLAVGQLCNVTVSKLA 305

Query: 155 RTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 214
             ++   +++ P T +     ++   S+  ++PG +V   V  +  +GV+L  L +F G+
Sbjct: 306 ANKRTCTVTASPSTFTSSAITEVS--SVTSIIPGSLVQALVTDVGADGVILQILGFFEGS 363

Query: 215 VDIFHLQNTFPTTNWKNDYNQHKKVNARILF---VDPTSRAVGLT-----LNPYLLHNRA 266
           VD  HL+ + P           +KV  R+L+    +P   AV L      L    L +  
Sbjct: 364 VDRIHLRRSGPP-------KIGQKVKGRVLYQYSTEPPRLAVALAEHIVGLANVQLSDEN 416

Query: 267 PPSHVKV------GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 320
           P S  ++      G I D  KVV+V+   GL L++         +  IS ++++ +  + 
Sbjct: 417 PASTQRLEEAYPFGHILDSVKVVKVEPERGLFLEVAP---GQEGFAHISHISDDHLPSVS 473

Query: 321 KK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 378
               +K  +  R R+ G+   +GL    LK S FE       D KPG +VKG + +V   
Sbjct: 474 PTGPWKVNTLHRARVTGYHSFDGLLQLSLKPSIFEQKFLQLEDFKPGEIVKGTIKSVSDS 533

Query: 379 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLV 436
              V   G +  +    H ++  +  P ++FK G  +  +VL V S  KRI++T KKTL+
Sbjct: 534 AIFVSLSGNIDGVIWPNHFADIRLKHPTRRFKPGNPIKCKVLVVDSDRKRISLTAKKTLL 593

Query: 437 KSKLAILSSYAEATDRLITHGWITKI-EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 495
           +S L I+S+  +     +THG I K+ EKH   V F+N ++      E       + +  
Sbjct: 594 ESDLPIVSNVGDVKVGTVTHGVIFKVLEKH-LMVEFFNNLKASVSAKEASESHTVKLADA 652

Query: 496 YHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 552
           + VG+ V+ RI S      RI  S     +  T V + ++V+ G  V G +  V    +V
Sbjct: 653 FSVGRAVRVRIQSVDREQGRITASIRQAAVSQTPVVDVNVVEEGEAVGGTIAEVHAEHIV 712

Query: 553 VYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKY 609
           +  +     +  +  + LA H  +  A V K ++KPG   + L+V   N    +++    
Sbjct: 713 I-TLQPTKVRALLTVKSLASHRNISPAQVHK-LVKPGDSIEDLIVATKNPEKGIVIVTTK 770

Query: 610 SLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 667
               +A  L    S   +     V G V    + G  V+   +++G    +   D    D
Sbjct: 771 PKPKAAAPLKGQVSLETVAVGQQVGGRVLRHTKQGALVKITSKISGILHPTDTADDY--D 828

Query: 668 LSKTY-YVGQSVRSNILDVNSETGRITLSLKQS 699
           + K +  V   + ++++ V+ +  ++TLS ++S
Sbjct: 829 VDKAFPPVDSLITASVVRVDKDKQQLTLSTRES 861



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 155/360 (43%), Gaps = 29/360 (8%)

Query: 364 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 423
           PG +V+  V  V + G I+Q  G  +      H+      K G+K K     V      +
Sbjct: 336 PGSLVQALVTDVGADGVILQILGFFEGSVDRIHLRRSGPPKIGQKVK---GRVLYQYSTE 392

Query: 424 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW----------ITKIE-KHGCFVRFY 472
             R+ V   + +V      LS    A+ + +   +          + K+E + G F+   
Sbjct: 393 PPRLAVALAEHIVGLANVQLSDENPASTQRLEEAYPFGHILDSVKVVKVEPERGLFLEVA 452

Query: 473 NGVQGFAPRSELGLD--PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
            G +GFA  S +  D  P   P+  + V  + + R+         + LS  +KP+   + 
Sbjct: 453 PGQEGFAHISHISDDHLPSVSPTGPWKVNTLHRARVTGYHSFDGLLQLS--LKPSIFEQK 510

Query: 531 DL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIK 585
            L     K G +V G +  V+ +A+  +V   G   G I   H AD  L+H T      K
Sbjct: 511 FLQLEDFKPGEIVKGTIKSVSDSAI--FVSLSGNIDGVIWPNHFADIRLKHPTRR---FK 565

Query: 586 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
           PG     ++LV+D++   + L+AK +L+ S   + S+   +   +V HG +  ++E    
Sbjct: 566 PGNPIKCKVLVVDSDRKRISLTAKKTLLESDLPIVSNVGDVKVGTVTHGVIFKVLEKHLM 625

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
           V F   L       +A +     L+  + VG++VR  I  V+ E GRIT S++Q+  S T
Sbjct: 626 VEFFNNLKASVSAKEASESHTVKLADAFSVGRAVRVRIQSVDREQGRITASIRQAAVSQT 685


>gi|353236542|emb|CCA68534.1| related to RRP5-processing of pre-ribosomal RNA [Piriformospora
            indica DSM 11827]
          Length = 1501

 Score =  319 bits (818), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 366/1333 (27%), Positives = 622/1333 (46%), Gaps = 156/1333 (11%)

Query: 512  ASRRINLSFMMKP--TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 569
            ASRR+ LS + +     +S  DL+K   L + +  V      + + IA     G +P +H
Sbjct: 274  ASRRLELSLLPQQFNAGLSGKDLIKGQVLPAVITSVEDYGYTLDFAIAN--ISGFLPFQH 331

Query: 570  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 627
             AD  +++  +   +K G      +V   ++  +      S +  A+   LPS AS +HP
Sbjct: 332  -ADQDDNSQEVPHNMKIGTWLATTVVKMEDNGRVCNVGIGSKVPKAELSTLPS-ASAVHP 389

Query: 628  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DV- 685
              +V   +      G  V+ LG  +G         G     + +  VG+ +++ IL D+ 
Sbjct: 390  GCLVKAMITESAPEGLNVQVLGLFSGTIHPLHVSPG-----AASTAVGKKIKARILWDIP 444

Query: 686  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG-FIIGSVI 744
             +E  +  LS      S      ++   L         +S ++G E + ++  F IG+++
Sbjct: 445  GTEPTQFALSTLPHILS------LRPRLL---------TSPNDGEESQDLQAVFPIGTIL 489

Query: 745  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVA 794
            +       D    +  +    + G +    +A   V S          G+V +A ++   
Sbjct: 490  DAVKVARVDTDRSLFLQVAEGLLGTVHISDVADEHVASLPDSSGPYKVGTVQRARVIGHN 549

Query: 795  KAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLV 853
              +  +  S+K +V   ++ +A+                D+ V   V   V  + E  L 
Sbjct: 550  PLDGTLRCSMKESVLSQKWLKAD----------------DIQVGSLVKGTVISLNEKGLF 593

Query: 854  LSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL-PSSS----TAGRLLL--L 906
            +SL    H+I + +       K P+++F  G+ +   V+ + P+ +    TA + L+   
Sbjct: 594  VSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKCRVLVVDPAQNRITLTAKKTLMEST 653

Query: 907  LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
            L  IS  ET+            V ++  A + +I    L ++F     G I   E  +  
Sbjct: 654  LPIISAIETNL-----------VNAVTHAIVFKISERVLTVEFYNNVRGIIPYKEALE-- 700

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEI--GSKLLFEE 1024
              + +NL   FKIGQ V  RII              E+ ++  +L  S I   S +   +
Sbjct: 701  -TLGQNLDQAFKIGQVVKVRII--------------EVKLEAGILVASIIKANSPVGPSK 745

Query: 1025 CDV----SIGQRVTGYVYKVDNEWALLTI--SRHLKAQLFILDSAYEPSELQEFQRRFHI 1078
             D+     IGQ V+G V  +  E   +T+  S  L        +    + + + +    I
Sbjct: 746  QDILAMTEIGQSVSGTVSDIHKEHVAITLQPSGALALLTLNNLANARDTSIAQLRSSLKI 805

Query: 1079 GKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
            G  +   V+ S N EK L+ +V++P      D + ++ N N      E   +G R++ ++
Sbjct: 806  GDDLRDLVIVSKNSEKGLVIVVVKP-----KDNSKNMFNLNDPNLKLENLQLGQRVTGVV 860

Query: 1138 --SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1195
                  G V+++   LYG +H TE+ +   + P       +  P+        V   V  
Sbjct: 861  LKHSKKGAVIKMSKRLYGCLHLTEISDDYSTHP-------KLPPIDS-----VVTAAVAN 908

Query: 1196 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1255
            + +T R    ++LS+R SL           S+ VD     +    +L     V+G+V  V
Sbjct: 909  VDKTHR---LLDLSIRPSL-----LEPQTQSSIVDP---RIRSFAELRIGQKVRGFVTEV 957

Query: 1256 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
               G F+ LS  LDAK+ + +L D Y +  +  F   ++V GR+L +     + E+TL++
Sbjct: 958  VDFGVFVALSPSLDAKIPVKHLFDVYNKDWKGSFTPDQMVEGRILRINVDKNQAEMTLRS 1017

Query: 1316 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--- 1372
             +    S +    LS+   G  V G I+ +  YG+FI I+ +++ GLCH SEL++ +   
Sbjct: 1018 GE--ITSLATNVTLSDFSKGQRVDGVIQNIAEYGVFIQIKGSDIKGLCHRSELADPNGPS 1075

Query: 1373 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS-YFKNDADNLQMSSEEESDEAIEEV 1431
             D +   ++ G+ V+  I+ VD EK+R+   +K S +F  + ++++M+S  E+ +   + 
Sbjct: 1076 ADEMLKTFKKGDVVRALIISVDAEKKRLGFSLKPSHFFDEELEDVEMASGGENQDQNSDD 1135

Query: 1432 GS---YNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNG 1488
            GS    N     E  S   Q+ D    DG S +  + E+    P   +NL          
Sbjct: 1136 GSEIVMNGQEPDEEDSGDEQEQDT---DGHSEITREPENEMGAP--AINLAAPL----RW 1186

Query: 1489 ISQNQGHTDEAK-TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS 1547
             + N    DEA+ + DE +   A+KK K  R+ EI       L+  AP++  +FERL+ +
Sbjct: 1187 TAANDAEEDEAEISSDEDDGGPARKKRK--RKHEILQDLTLDLQSRAPQSTADFERLLLA 1244

Query: 1548 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1607
            SPNSS++W+++MAF L ++D+EKAR +  RAL+ IN REE E+LN+W+   NLE  YG  
Sbjct: 1245 SPNSSYLWLQFMAFQLQLSDIEKAREVGRRALKAINFREEQERLNVWIGLLNLEVTYGT- 1303

Query: 1608 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRV 1667
             E  +  +F+ A +  D K VH  L  L +  ++ + A+E   K  KKF  SCKVW    
Sbjct: 1304 -EATLDAIFKEAARANDSKTVHWRLALLLDDAQKPEQAEEQFRKSCKKFGSSCKVWTLFA 1362

Query: 1668 QRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1726
            +   K+   E  + ++ ++LLSL + KH+K  S+ A LE++ G  +RGR++FEGI+  + 
Sbjct: 1363 EHYFKRGMPEKARELLSKSLLSLEKRKHLKVASKFAQLEYRMGDPERGRTLFEGIVDTHR 1422

Query: 1727 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1786
            KR DLW+IY+D E    D+  IR + ERAI+L L  KK KFLFKK+LE EK +G++E   
Sbjct: 1423 KRLDLWNIYIDMETGQRDIHRIRNICERAITLKLSKKKAKFLFKKWLELEKRLGDKEGEA 1482

Query: 1787 YVKQKAMEYVEST 1799
             VK KA+E+ +S+
Sbjct: 1483 VVKVKAVEWTQSS 1495



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 151/516 (29%), Positives = 235/516 (45%), Gaps = 45/516 (8%)

Query: 76  RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-----RN 130
           R++ LSL       GLS + + +G VL A + S+ED+GY L F + + +GFLP     ++
Sbjct: 276 RRLELSLLPQQFNAGLSGKDLIKGQVLPAVITSVEDYGYTLDFAIANISGFLPFQHADQD 335

Query: 131 NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI-SIDLLVPGM 189
           + ++    ++K G  L   V  ++   +V  +       SK    +L  + S   + PG 
Sbjct: 336 DNSQEVPHNMKIGTWLATTVVKMEDNGRVCNVG----IGSKVPKAELSTLPSASAVHPGC 391

Query: 190 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---- 245
           +V   +      G+ +  L  F+GT+   H+     +T         KK+ ARIL+    
Sbjct: 392 LVKAMITESAPEGLNVQVLGLFSGTIHPLHVSPGAASTAVG------KKIKARILWDIPG 445

Query: 246 VDPTSRAVG-----LTLNPYLLH--NRAPPSH-----VKVGDIYDQSKVVRVDRGLGLLL 293
            +PT  A+      L+L P LL   N    S        +G I D  KV RVD    L L
Sbjct: 446 TEPTQFALSTLPHILSLRPRLLTSPNDGEESQDLQAVFPIGTILDAVKVARVDTDRSLFL 505

Query: 294 DIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKAS 350
            +    + T   V ISDVA+E V  L      YK G+  R R++G   L+G     +K S
Sbjct: 506 QVAEGLLGT---VHISDVADEHVASLPDSSGPYKVGTVQRARVIGHNPLDGTLRCSMKES 562

Query: 351 AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 410
                     D++ G +VKG VI+++  G  V   G V A+    H ++  +  P +KF+
Sbjct: 563 VLSQKWLKADDIQVGSLVKGTVISLNEKGLFVSLSGNVHAIVWPNHYADIPLKHPERKFR 622

Query: 411 VGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 468
           VG  +  RVL V     RIT+T KKTL++S L I+S+        +TH  + KI +    
Sbjct: 623 VGKLIKCRVLVVDPAQNRITLTAKKTLMESTLPIISAIETNLVNAVTHAIVFKISERVLT 682

Query: 469 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM-----SSIPASRRINLSFMMK 523
           V FYN V+G  P  E     G      + +GQVVK RI+     + I  +  I  +  + 
Sbjct: 683 VEFYNNVRGIIPYKEALETLGQNLDQAFKIGQVVKVRIIEVKLEAGILVASIIKANSPVG 742

Query: 524 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 559
           P++     + ++G  VSG V  +    V + +   G
Sbjct: 743 PSKQDILAMTEIGQSVSGTVSDIHKEHVAITLQPSG 778



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 131/606 (21%), Positives = 230/606 (37%), Gaps = 116/606 (19%)

Query: 493  SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLGSLVSGVVDVVTP 548
            S  Y VG V + R++   P    +  S  MK + +S+     D +++GSLV G V  ++ 
Sbjct: 532  SGPYKVGTVQRARVIGHNPLDGTLRCS--MKESVLSQKWLKADDIQVGSLVKGTV--ISL 587

Query: 549  NAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 604
            N   ++V   G     +   H AD    H E    +  +IK      ++LV+D   + + 
Sbjct: 588  NEKGLFVSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKC-----RVLVVDPAQNRIT 642

Query: 605  LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
            L+AK +L+ S   + S       N+V H  V  I E    V F   + G  P  +A++  
Sbjct: 643  LTAKKTLMESTLPIISAIETNLVNAVTHAIVFKISERVLTVEFYNNVRGIIPYKEALETL 702

Query: 665  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS-------------------CCSSTD 705
              +L + + +GQ V+  I++V  E G +  S+ ++                     S T 
Sbjct: 703  GQNLDQAFKIGQVVKVRIIEVKLEAGILVASIIKANSPVGPSKQDILAMTEIGQSVSGTV 762

Query: 706  ASFMQEHFLL--------------------EEKIAMLQSSKHNGSELKWV--------EG 737
            +   +EH  +                    +  IA L+SS   G +L+ +        +G
Sbjct: 763  SDIHKEHVAITLQPSGALALLTLNNLANARDTSIAQLRSSLKIGDDLRDLVIVSKNSEKG 822

Query: 738  FIIGSVIEGKVHESNDFGV------VVSFEEHSDVYGFITHHQLAGATVESG-------- 783
             +I  V++ K +  N F +      + + +    V G +  H   GA ++          
Sbjct: 823  LVI-VVVKPKDNSKNMFNLNDPNLKLENLQLGQRVTGVVLKHSKKGAVIKMSKRLYGCLH 881

Query: 784  ------------------SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 825
                              SV+ AA+ +V K  RL+DLS++   ++         Q+    
Sbjct: 882  LTEISDDYSTHPKLPPIDSVVTAAVANVDKTHRLLDLSIRPSLLE------PQTQSSIVD 935

Query: 826  RKREASKDLGVHQTVNAIV-EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG 884
             +  +  +L + Q V   V E+V     V   P  +  I    + D   + + +  F   
Sbjct: 936  PRIRSFAELRIGQKVRGFVTEVVDFGVFVALSPSLDAKIPVKHLFDVYNKDW-KGSFTPD 994

Query: 885  QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLE 944
            Q V   ++ +        + L    I+   T+ +      S +  G  V   I  I    
Sbjct: 995  QMVEGRILRINVDKNQAEMTLRSGEITSLATNVT-----LSDFSKGQRVDGVIQNIAEYG 1049

Query: 945  LRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1003
            + ++  G    G  H +E+ D      + +   FK G  V A II+     D +K  L  
Sbjct: 1050 VFIQIKGSDIKGLCHRSELADPNGPSADEMLKTFKKGDVVRALIISV----DAEKKRLG- 1104

Query: 1004 LSIKPS 1009
             S+KPS
Sbjct: 1105 FSLKPS 1110



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 142/369 (38%), Gaps = 35/369 (9%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKP-GKKFKVGAELVFR 418
           D+  G V+   + +V+ +G  + F    +    P  H  + +  +      K+G  L   
Sbjct: 295 DLIKGQVLPAVITSVEDYGYTLDFAIANISGFLPFQHADQDDNSQEVPHNMKIGTWLATT 354

Query: 419 VLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
           V+ ++   +   V     + K++L+ L S +      +    IT+    G  V+      
Sbjct: 355 VVKMEDNGRVCNVGIGSKVPKAELSTLPSASAVHPGCLVKAMITESAPEGLNVQVLGLFS 414

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-------- 528
           G      L + PG   ++   VG+ +K RI+  IP +     +    P  +S        
Sbjct: 415 GTI--HPLHVSPGAASTA---VGKKIKARILWDIPGTEPTQFALSTLPHILSLRPRLLTS 469

Query: 529 ------EDDL---VKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 578
                   DL     +G+++  V V  V  +  +   +A+G   GT+    +AD  EH  
Sbjct: 470 PNDGEESQDLQAVFPIGTILDAVKVARVDTDRSLFLQVAEGLL-GTVHISDVAD--EHVA 526

Query: 579 VMKSVIKP---GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 635
            +     P   G      ++  N     L  +    + S + L +D   I   S+V G V
Sbjct: 527 SLPDSSGPYKVGTVQRARVIGHNPLDGTLRCSMKESVLSQKWLKAD--DIQVGSLVKGTV 584

Query: 636 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
            ++ E G FV   G +      +   D       + + VG+ ++  +L V+    RITL+
Sbjct: 585 ISLNEKGLFVSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKCRVLVVDPAQNRITLT 644

Query: 696 LKQSCCSST 704
            K++   ST
Sbjct: 645 AKKTLMEST 653


>gi|402220022|gb|EJU00095.1| U3 snoRNP-associated protein Rrp5 [Dacryopinax sp. DJM-731 SS1]
          Length = 1492

 Score =  317 bits (812), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 218/758 (28%), Positives = 399/758 (52%), Gaps = 80/758 (10%)

Query: 1086 VLSINKEKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1144
            V+S N EK+++ L V  P  +     +  IS   +    H G I+ G++  I    G   
Sbjct: 768  VVSKNPEKRIVILAVTLPGSNAGPSSSTAISWKTL----HVGQILLGQV--IGEKNGSTS 821

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V++  +L GR+H  +L +          + G   P +G      +K  V+ +    R   
Sbjct: 822  VRLSQYLIGRLHPLDLTD--------NLENGIVFPRAG----SALKVAVVGVDPHAR--- 866

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
                    +LD   ST  S L+ +   P     +  +++L  +  V G VKN++  G F+
Sbjct: 867  --------TLD--LSTRPSRLNPESHPPIVDPEITSLDNLQVDDKVGGVVKNISDSGLFV 916

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR--- 1319
             L R + A+V +  L D +V+  +  F + ++V G++  V+    RV++++++   +   
Sbjct: 917  SLGRNITARVQIKELFDEFVKDWQTRFSVNQVVKGKITHVDHEKNRVDMSMRSGVRKHHK 976

Query: 1320 -TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
             +  + ++ ++ +      V G++  +  YGLFI I+++++ GLCH SELS+    +++ 
Sbjct: 977  SSGKEDKLRHMKDFEKRQKVTGKVTSITKYGLFILIDDSDVSGLCHHSELSDTKQGDVQV 1036

Query: 1379 I---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKN------DADNLQMSSEEESDEAIE 1429
                +R G+ VK  IL +++E +++SLG+K SYF        D  + Q+ + +E+ E+ +
Sbjct: 1037 ALQGFRVGDTVKAVILWINEETKKVSLGLKPSYFTAEDYETADTPDDQLEASKEAGESED 1096

Query: 1430 E---------VGSYNRSSLLENSSVAVQDMDME--------------SEDGGSLVLAQIE 1466
            E         +G   ++ + E+ + +    D                S D GS   A   
Sbjct: 1097 EDENTTSWAGIGEGGKTDMDEDGAASFLGFDDVAEEEAESEDDVIILSGDHGSKSSAAPA 1156

Query: 1467 SRA-----SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE 1521
             ++     S P L+++   +     +  ++     +E+    E ++ H +KK+K  R  +
Sbjct: 1157 KKSNPATTSAPTLQLSGGFQWSHTVDDEAEEDAPANESDVESEASDSHPRKKKK--RGHQ 1214

Query: 1522 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1581
            I       +++  P +  +FERL+  SPNSSF+WI++M+F L ++DV+ AR IA+RAL+ 
Sbjct: 1215 IEEDLTLAMQERTPESVADFERLLLGSPNSSFLWIQFMSFYLQLSDVDNAREIAKRALKV 1274

Query: 1582 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1641
            IN REE EK+N+W+A  NLEN  G   EE++ K FQ A +  D K +HL +  +++ + +
Sbjct: 1275 INFREEQEKMNVWIALLNLENTTGT--EESLEKTFQDATRANDSKAIHLRMATIFDESGK 1332

Query: 1642 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQ 1700
             + A+++  + +KKF  S  VW       + Q + +  + ++ R+L SL + KHI+ I +
Sbjct: 1333 PEKAEDMHKRAVKKFNESTTVWTSFGHHYMSQGKLDEARELLPRSLKSLEKRKHIETILK 1392

Query: 1701 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1760
             A +E++ G  +RG+++FE I+  +PKR DLW +Y+D E + GD+  +R LF+R ++L L
Sbjct: 1393 FAQMEYELGEPERGKTLFEAIVDSHPKRLDLWFVYVDMEAKQGDLQTVRKLFDRMLALKL 1452

Query: 1761 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
               K K +FKK+LE EK +G+EE  E+VK +A+E++++
Sbjct: 1453 NTFKAKSVFKKWLELEKRLGDEEGQEHVKARAVEWMQN 1490



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 141/490 (28%), Positives = 236/490 (48%), Gaps = 45/490 (9%)

Query: 49  LPTIFHVGQLV-SCIV------------LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 95
           L +IFHVGQ V +C+V            L+   ++ E   R++ L+L   ++ +G+ ++ 
Sbjct: 201 LASIFHVGQYVQACVVNVRSAGTRAAPELEKPKNEMEAMARRVELTLVPEVVNEGVVIKD 260

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 155
           + +G +L   +KS+EDHGY +  G+P  +GFLP  N   +S   + PG LL   V  +  
Sbjct: 261 LVKGFMLPGAIKSVEDHGYSVELGIPHLSGFLPFTNTPPSSS-RLSPGHLLTCTVSEVPA 319

Query: 156 TRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGT 214
           ++++  L+  P    +     L  +S +  L+PG +V   + + + +G+ L  L +F GT
Sbjct: 320 SKRICTLTIQPSQKEEV----LDQVSNVTSLLPGTLVRGLITASVTSGLNLQILGFFEGT 375

Query: 215 VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLLHNRAPP---- 268
           +D+ HL    P       Y    K+ AR+L+  P S      L+  P+++   AP     
Sbjct: 376 IDLTHLPKD-PAL-----YKVGTKLKARVLWHLPGSSPPKFALSALPHVVDLAAPEVDGV 429

Query: 269 ---SHVKVGDIYDQSKVVRVDR--GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK-- 321
                   G+I    KVVRV+   GL ++LD       T  +V I+++++E +  L    
Sbjct: 430 STQEKHPYGEILHGVKVVRVEAEWGLSVVLD----DEETRGFVHIANISDEHIPALSATS 485

Query: 322 -KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 380
             +K G+    R+LGF  L+GL    LK S  E       D  PG +VKG +  +   G 
Sbjct: 486 GAWKVGTKHDARVLGFYALDGLLRLSLKPSQLERRFVQTGDFTPGEIVKGAIENLTDVGM 545

Query: 381 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKS 438
            V   G +     L  +++ E+  P K+FK GA +  R+L V  +  R+T+T KK+L+ S
Sbjct: 546 FVDVGGDISGRVALDQLADIELKHPEKRFKAGASVKCRILAVDPEHGRLTLTCKKSLLSS 605

Query: 439 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
            L I++   +A   ++    ++K+   G  V  Y GV+GF P  E           +   
Sbjct: 606 DLPIIAKLDDAKQGMVADAVVSKVLPSGALVMLYGGVKGFVPIREASEGYIKSVDEILKP 665

Query: 499 GQVVKCRIMS 508
           GQ VK +++S
Sbjct: 666 GQAVKVKVLS 675



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 2/160 (1%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            D +P  IV+G ++N+T  G F+ +   +  +V L  L+D  ++ PEK F  G  V  R+L
Sbjct: 526  DFTPGEIVKGAIENLTDVGMFVDVGGDISGRVALDQLADIELKHPEKRFKAGASVKCRIL 585

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            +V+P   R+ +T K S   ++    I  L +   G +    + +V   G  + +    + 
Sbjct: 586  AVDPEHGRLTLTCKKS-LLSSDLPIIAKLDDAKQGMVADAVVSKVLPSGALVMLYG-GVK 643

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
            G   + E SE ++ +++ I + G+ VKVK+L V+ E+  I
Sbjct: 644  GFVPIREASEGYIKSVDEILKPGQAVKVKVLSVNTEEGNI 683



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 102/462 (22%), Positives = 187/462 (40%), Gaps = 69/462 (14%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 988
            G+LV+  IT      L L+    F G I +T +  D +         +K+G  + AR++ 
Sbjct: 349  GTLVRGLITASVTSGLNLQILGFFEGTIDLTHLPKDPAL--------YKVGTKLKARVLW 400

Query: 989  --AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY-VYKVDNEWA 1045
                S+ P       + LS  P ++ ++      +  +     G+ + G  V +V+ EW 
Sbjct: 401  HLPGSSPPK------FALSALPHVVDLAAPEVDGVSTQEKHPYGEILHGVKVVRVEAEWG 454

Query: 1046 LLTISRHLKAQLFI----LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1101
            L  +    + + F+    +   + P+ L      + +G      VL       LLRL L+
Sbjct: 455  LSVVLDDEETRGFVHIANISDEHIPA-LSATSGAWKVGTKHDARVLGFYALDGLLRLSLK 513

Query: 1102 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK----ILSGVGGLVVQIGPHLYGRVHF 1157
            P Q               + F+  GD   G I K     L+ VG + V +G  + GRV  
Sbjct: 514  PSQ-------------LERRFVQTGDFTPGEIVKGAIENLTDVG-MFVDVGGDISGRVAL 559

Query: 1158 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1217
             +L +I +  P     E +F        G  VKC++L +        H  L+L       
Sbjct: 560  DQLADIELKHP-----EKRFK------AGASVKCRILAVDPE-----HGRLTL------- 596

Query: 1218 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1277
             +   S LS+D+      + K++D    M+    V  V   G  +ML   +   V +   
Sbjct: 597  -TCKKSLLSSDLPI----IAKLDDAKQGMVADAVVSKVLPSGALVMLYGGVKGFVPIREA 651

Query: 1278 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1337
            S+GY++S ++    G+ V  +VLSV      +  +L+ +       +   ++ ++ VG  
Sbjct: 652  SEGYIKSVDEILKPGQAVKVKVLSVNTEEGNILASLRQAQPSYQPAAPGVDVEDIAVGSN 711

Query: 1338 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
            V  +IK V++  + ++I+      L  ++ L+      +E +
Sbjct: 712  VEAEIKDVQAINVVLSIQPGGQTALLSLANLANRRNTTVEAL 753



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 152/364 (41%), Gaps = 33/364 (9%)

Query: 364 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--- 420
           PG +V+G + A  + G  +Q  G  +    L H+      K    +KVG +L  RVL   
Sbjct: 348 PGTLVRGLITASVTSGLNLQILGFFEGTIDLTHLP-----KDPALYKVGTKLKARVLWHL 402

Query: 421 -GVKSKRITVT---HKKTLVKSKLAILSSYAEATDRLITHGW-ITKIEKHGCFVRFYNG- 474
            G    +  ++   H   L   ++  +S+  +     I HG  + ++E         +  
Sbjct: 403 PGSSPPKFALSALPHVVDLAAPEVDGVSTQEKHPYGEILHGVKVVRVEAEWGLSVVLDDE 462

Query: 475 -VQGF---APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR---- 526
             +GF   A  S+  +      S  + VG     R++        + LS  +KP++    
Sbjct: 463 ETRGFVHIANISDEHIPALSATSGAWKVGTKHDARVLGFYALDGLLRLS--LKPSQLERR 520

Query: 527 -VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 584
            V   D    G +V G ++ +T   V ++V   G   G +  + LAD  L+H    +   
Sbjct: 521 FVQTGDFTP-GEIVKGAIENLT--DVGMFVDVGGDISGRVALDQLADIELKHP---EKRF 574

Query: 585 KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 643
           K G     ++L +D E   L L+ K SL++S   + +         V    V  ++ +G 
Sbjct: 575 KAGASVKCRILAVDPEHGRLTLTCKKSLLSSDLPIIAKLDDAKQGMVADAVVSKVLPSGA 634

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
            V   G + GF P  +A +G    + +    GQ+V+  +L VN+E G I  SL+Q+  S 
Sbjct: 635 LVMLYGGVKGFVPIREASEGYIKSVDEILKPGQAVKVKVLSVNTEEGNILASLRQAQPSY 694

Query: 704 TDAS 707
             A+
Sbjct: 695 QPAA 698



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 109/487 (22%), Positives = 204/487 (41%), Gaps = 77/487 (15%)

Query: 955  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1014
            G +HI  ++D+    +      +K+G    AR++            L  LS+KPS L   
Sbjct: 466  GFVHIANISDEHIPALSATSGAWKVGTKHDARVLGF-----YALDGLLRLSLKPSQL--- 517

Query: 1015 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1074
                +   +  D + G+ V G +  + +    + +   +  ++  LD   +  EL+  ++
Sbjct: 518  ---ERRFVQTGDFTPGEIVKGAIENLTDVGMFVDVGGDISGRV-ALDQLAD-IELKHPEK 572

Query: 1075 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1134
            RF  G +V   +L+++ E   L L  +      SD  +    D+ +    +G +    +S
Sbjct: 573  RFKAGASVKCRILAVDPEHGRLTLTCKKSLLS-SDLPIIAKLDDAK----QGMVADAVVS 627

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE----GQFVK 1190
            K+L   G LV+     LYG V       + + +   GY       +   DE    GQ VK
Sbjct: 628  KVLPS-GALVM-----LYGGVK----GFVPIREASEGY-------IKSVDEILKPGQAVK 670

Query: 1191 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1250
             KVL ++ T  G              ++S   +  S     PG     +ED++    V+ 
Sbjct: 671  VKVLSVN-TEEGNI------------LASLRQAQPSYQPAAPGV---DVEDIAVGSNVEA 714

Query: 1251 YVKNVTSKGCFIMLSRKLDAKVL----LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
             +K+V +    + +       +L    L+N  +  VE+       G +++  V+  +   
Sbjct: 715  EIKDVQAINVVLSIQPGGQTALLSLANLANRRNTTVEALRLSLVPGTVLSDLVVVSKNPE 774

Query: 1307 KRV---EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
            KR+    VTL  S++  +S + I+    LHVG I++GQ+   ++    + + +  L+G  
Sbjct: 775  KRIVILAVTLPGSNAGPSSSTAIS-WKTLHVGQILLGQVIGEKNGSTSVRL-SQYLIGRL 832

Query: 1364 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA---------- 1413
            H  +L+ D+++N     RAG  +KV ++ VD   R + L  + S    ++          
Sbjct: 833  HPLDLT-DNLENGIVFPRAGSALKVAVVGVDPHARTLDLSTRPSRLNPESHPPIVDPEIT 891

Query: 1414 --DNLQM 1418
              DNLQ+
Sbjct: 892  SLDNLQV 898


>gi|194374585|dbj|BAG57188.1| unnamed protein product [Homo sapiens]
          Length = 771

 Score =  316 bits (810), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 215/695 (30%), Positives = 359/695 (51%), Gaps = 40/695 (5%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
           M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84  MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
             G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144 SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114 YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
           Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS     
Sbjct: 202 YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261

Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
           VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL      T 
Sbjct: 262 VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321

Query: 229 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
           + N     + V A IL V P +R V L+L P  L    P + +    +G + D   V   
Sbjct: 322 FSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376

Query: 286 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
            +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 377 FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
            L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 434 SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493

Query: 406 GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
            KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 494 EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 553

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
            +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF + 
Sbjct: 554 DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613

Query: 523 -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
                  +P   S+     + +G LV   V   T + + V V+     +  +PT HL+DH
Sbjct: 614 SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672

Query: 574 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
           + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P + S IHP  ++
Sbjct: 673 VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLRRKPALVSTVEGGQDPKNFSEIHPGMLL 732

Query: 632 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 666
            G+V +I + G F++F   L+G AP++      R+
Sbjct: 733 IGFVKSIKDYGVFIQFPSGLSGLAPKAIMCSSCRS 767



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 148/644 (22%), Positives = 258/644 (40%), Gaps = 111/644 (17%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVK-PGKKFKVGA 413
           V +   +KPGM++ G V +++  G +V     G +A  PL    E+   K  G K KVG 
Sbjct: 178 VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQ 237

Query: 414 ELVFRVLGVKSK----RITVTHKKTLVKSKLAILSSYAEATDR-----------LITHGW 458
            L   V  VK       ++V H +           S A AT++           L+    
Sbjct: 238 YLNCIVEKVKGNGGVVSLSVGHSEV----------STAIATEQQSWNLNNLLPGLVVKAQ 287

Query: 459 ITKIEKHGC---FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515
           + K+   G    F+ F+ GV  F     + LDP  + +  Y   Q V+  I+   P +R 
Sbjct: 288 VQKVTPFGLTLNFLTFFTGVVDF-----MHLDP--KKAGTYFSNQAVRACILCVHPRTRV 340

Query: 516 INLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 572
           ++LS     ++P R     L +L     G        AV+  V  +G+ K    T  L D
Sbjct: 341 VHLSLRPIFLQPGR----PLTRLSCQNLG--------AVLDDVPVQGFFKKAGATFRLKD 388

Query: 573 ------HLEHATVMKSVI-----KPGYEFDQLLVLDNESSNL-LLSAKYSLINSAQQLPS 620
                  L H +  K+V      KPG      ++  ++   L LLS + S+I  AQ L  
Sbjct: 389 GVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIE-AQYL-- 445

Query: 621 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 680
               I P +VV G V  I   G  V+   ++ G  P     D    +  K Y++G  V+ 
Sbjct: 446 RYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKC 505

Query: 681 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 740
            +L  + E  ++ ++LK++              L+E K+ ++         L+   GFII
Sbjct: 506 RVLLCDPEAKKLMMTLKKT--------------LIESKLPVITCYADAKPGLQ-THGFII 550

Query: 741 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDV 793
                       D+G +V F  +++V G +  H+L+   +        +G V++  +L+ 
Sbjct: 551 ---------RVKDYGCIVKF--YNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 794 AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA-IVEIVKENYL 852
             ++  + LS K         ++   + +     ++  K + + Q V+  ++E  K+   
Sbjct: 600 EPSKERMLLSFKL-------SSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLE 652

Query: 853 VLSLPEYNHS-IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 911
           V  LP    + +  + +SD+         +L    ++  V+ L  S + GR+LL  K   
Sbjct: 653 VAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCL--SQSEGRVLLRRKPAL 710

Query: 912 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 955
            +     +  K  S    G L+   +  IK   + ++F  G  G
Sbjct: 711 VSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSG 754



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 150/337 (44%), Gaps = 57/337 (16%)

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1135 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            ++  GV           Y R+ H ++ KN+             F+P   +  G   KC++
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRI 421

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            ++ S+         LSLR+S+                   ++L +  D+ P  +V+G V 
Sbjct: 422  IDYSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVL 461

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             + S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TL
Sbjct: 462  TIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTL 521

Query: 1314 KTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K    +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS 
Sbjct: 522  K----KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELST 576

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++ + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 577  EYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613


>gi|440791390|gb|ELR12628.1| S1 RNA binding domain containing protein [Acanthamoeba castellanii
            str. Neff]
          Length = 1936

 Score =  311 bits (796), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 147/266 (55%), Positives = 202/266 (75%), Gaps = 4/266 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P+T D++E+L+ +SPNSSF+WIKYMAF LS+A++++AR IAERAL+ IN REE EKLN+W
Sbjct: 1669 PKTADDYEKLLLASPNSSFLWIKYMAFQLSIAEIDRAREIAERALKRINFREEQEKLNVW 1728

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            VA  NLEN++G+   E++++VFQRAL Y DPK V+L L+G+YER+EQ KLA+EL   M K
Sbjct: 1729 VALMNLENKHGS--NESLMQVFQRALTYNDPKTVNLQLVGIYERSEQYKLAEELYKAMTK 1786

Query: 1655 KFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            KFKHS ++WLR  Q  LK     EG + V++RAL  LP+ KHI  IS+ A +EFK+G  +
Sbjct: 1787 KFKHSWQIWLRYSQFHLKNLHSIEGARKVLERALQVLPKKKHIGVISKMAQMEFKHGSPE 1846

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
            RGR++FEGILS YPKR D+W IY+D E+ LGD   IR LFE+  +L L  KKM++ F++Y
Sbjct: 1847 RGRTIFEGILSNYPKRVDIWGIYIDMELALGDHGAIRNLFEKVTTLQLSSKKMRYFFERY 1906

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVES 1798
            L++EK  G +E + +V++KA +YV S
Sbjct: 1907 LKFEKEHGTKESVGHVREKARQYVLS 1932



 Score = 61.6 bits (148), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 178/827 (21%), Positives = 307/827 (37%), Gaps = 142/827 (17%)

Query: 340  EGLATGILKASAFEGLVFTH----SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP-- 393
            EGLA+ +   +AF    F        + PG  + G V  V  F   +  P G+  + P  
Sbjct: 71   EGLASSV---TAFNFPKFIEPLRFKSLAPGTSLLGAVTKVKDFKMHLTLPSGLTGVVPIT 127

Query: 394  --------------------LPHMSEFEIVKPGKKFK-VGAELVFRVLGVKSKRITVTHK 432
                                LP MS F   KPG+    V   L  R  G K K + ++ +
Sbjct: 128  EVTDTLSELLASKVDDEDDVLPKMSAF--FKPGQLVPCVIKALEEREKGNK-KNVVLSLR 184

Query: 433  KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF-YNGVQGFAPR--SELGLDPG 489
             +L+   LAI       T  +  HG +  +E HG  + F  N   GF  +  +E+  D  
Sbjct: 185  PSLLNQNLAI----GNITPGMAIHGSVKSVEDHGYIISFGTNEFTGFLVKDTAEMTEDEE 240

Query: 490  CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK--PTRVSEDDLV------KLGSLVSG 541
             + ++ + VGQ V C + S    +  + + +      T V++D+ V      K G L++ 
Sbjct: 241  SQ-TAQFVVGQPVACVVDSVKRENNTVTVHYDPDKFSTAVTKDNNVFTIQTLKAGMLINA 299

Query: 542  VVDVVTPNAVVVYVIAKGYSKGTIPTEHL--------ADHLEHATVMKSVIKPGYEFDQL 593
             V  V    + +  +  GY  GT+ ++HL        A++ E   V+  ++   YE    
Sbjct: 300  QVKKVYKQGLFLQFL--GYFGGTVSSQHLGCPLSKLSANYPEGKKVLGRIVHVDYE---- 353

Query: 594  LVLDNESSNLLLS--AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR- 650
               +  +S  LL    KY     A + P +A HI                G F+      
Sbjct: 354  ---NKMASFSLLPHIVKY----QAYEFP-EAVHIGQRFEAAKVTMVDKRNGLFLELPTEP 405

Query: 651  -LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
                F P +   D    +L K Y +G+ V   ++  +   G +T+++KQS     D +F+
Sbjct: 406  AQAAFVPATLVSDESEENLKK-YRMGREVVCRVVSRDPLEGVVTVAMKQSIL---DLAFL 461

Query: 710  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 769
            +                         E   IG  ++G + E    G+V+S  +   +  F
Sbjct: 462  RR------------------------EDIPIGKKLKGTILELVPKGMVISLTK--SIRAF 495

Query: 770  ITHHQLAGATVESGSVIQAAILDVAKAERL-VDLSLKTVFIDRFREANSNRQAQKKKRKR 828
                Q++  T          I D  K + L VD     V +                +K 
Sbjct: 496  CPSSQMSDITQLQNPAAHFKIGDTIKCKALSVDPVAGRVIV--------------TCKKS 541

Query: 829  EASKDLGVHQTVNAIVEIVKENYLVLSLPEY-------NHSIGYASVSDY--NTQKFPQK 879
              S DL V  +       V+ +  + S+ EY       N   G   +S    N    P+K
Sbjct: 542  LVSSDLPVITSFEDAEPGVQSHGYISSVKEYGVFVTFFNGVTGLVGLSQLSNNFVDNPEK 601

Query: 880  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 939
             +  GQ V   V+   +      L  L K   E        A   +   VGS+V   +  
Sbjct: 602  VYTAGQVVKCHVLTCDAQKKRISLSFLKKQKQEV---LENEAYNWNELKVGSMVSGTVKY 658

Query: 940  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 999
            +    +R++   G  G +    ++D   +  E + +    G  +   ++   N+   + +
Sbjct: 659  LVDGAVRVELSGGIAGVLPNPHLSDHVGH-CEAIRATLSKGSVLKEMLVWSKNEAQKRIT 717

Query: 1000 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1059
                LS KPS++  ++ G +LL    D + G   TG +  ++     +  +  +    ++
Sbjct: 718  ----LSCKPSLIEAAKSG-QLLQAREDFTSGTLSTGIIRGIETFGCFVEFANSIAGLAYV 772

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106
             +    P  L + + RF +G+ V   V+    +K  L L L+P Q G
Sbjct: 773  TNLVDGP--LDDLKTRFTVGQTVRARVVDSTGDK--LSLTLKPSQCG 815


>gi|225680123|gb|EEH18407.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb03]
          Length = 1175

 Score =  305 bits (782), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 297/1100 (27%), Positives = 523/1100 (47%), Gaps = 130/1100 (11%)

Query: 592  QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 651
            ++L ++ E   L L+ K SL+NS      + S I P +   G + +I   G  V+F G +
Sbjct: 24   RILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQSPGTIISIHPHGAIVQFYGEV 83

Query: 652  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
             GF P S+  +    D S+ + VGQ V  + L V++E  ++ +S K     ST     + 
Sbjct: 84   RGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAEVRKLVVSCKDP---STSTETYKN 140

Query: 712  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 771
             F                      E    G ++   V E +   +++  E    V     
Sbjct: 141  AF----------------------ENIQPGDLVSCTVFEKSKEVILLRLEGSGLVARLNA 178

Query: 772  HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF-IDRFREANSNRQAQKKKRKREA 830
             H   G + + GS + A I    K   LV LS++ V  + +     S +QA+++      
Sbjct: 179  EHVTDGQSSKHGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAK 237

Query: 831  SKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIA 889
             +DL     V   V+ I+ +   V  L      +    + D +  K P   +   Q++ +
Sbjct: 238  FEDLQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAK-PDFGYTLSQTISS 296

Query: 890  TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS---------------SYD---VGS 931
             V ++       R  L +K    ++   S  A+  S               S+D    G 
Sbjct: 297  FVHSIEDDRQ--RFTLSMKENQTSKQRVSDNARPASNANQASINPVDGDIKSFDDLTFGR 354

Query: 932  LVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARII- 988
            + +A+I  +K  ++ ++      GRI ++E+ D  D     +     FK  Q +  RII 
Sbjct: 355  ITKAKIVSVKETQINVQLADNIQGRIDVSEIFDGWDAIKDRKQPLRYFKPKQIIPVRIIG 414

Query: 989  ---AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1040
               A+S+K  P   +S    ++ELS KPS L   +I    L     V IG    G+V  +
Sbjct: 415  IHDARSHKFLPISHRSGKYPVFELSAKPSSLESKDIE---LLSLDKVEIGSSWLGFVNNI 471

Query: 1041 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1100
             ++   + I+ +++ +L I D + + S + + ++ F +G A+  HV  +N +K  L L  
Sbjct: 472  GDDCLWINITPNVRGRLRITDVSDDLSLVGDVKKNFPVGSAIKVHVTGVNVDKNRLDL-- 529

Query: 1101 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1160
                   S K  D  N    +   +G+I+ GR++K+      ++VQ+     G ++  ++
Sbjct: 530  -------SAKHGDPLNKRTISDFSKGEILLGRVTKVSDR--QVLVQLSDTTVGAINLIDM 580

Query: 1161 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1220
             +          D  +  P + + + + ++  +L++    +    + LS+R S       
Sbjct: 581  AD----------DYTKVIP-ANFHKNEVLRVCILDVDVPNK---KILLSVRPS------- 619

Query: 1221 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1280
                LS+ +      ++ I  L  N IV+G+V+ V + G F+ L  ++ A V +S+LSD 
Sbjct: 620  --RVLSSSLPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLSDS 677

Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1340
            Y++  + EF + +LV GR++ V+  + +++++LK S      ++ I  + +L+ G IV G
Sbjct: 678  YLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAPIT-IRDLNRGQIVTG 736

Query: 1341 QIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1399
            +++ VE +G FI I+ T NL GLCH +E++E  V++   ++  G+ VK KILK+D +K R
Sbjct: 737  KVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDKER 796

Query: 1400 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGS 1459
            ISLG+K+SYFK         S+++SD    E G  N  S+ EN      +++ ES+D  S
Sbjct: 797  ISLGLKASYFK--------ESDDKSDGENSEDG--NEQSVSENEDDGELELEFESDDDVS 846

Query: 1460 LVLAQIESRASVPPLEVNLDDEQPDM----DNGIS----------QNQGHT--DEAKTID 1503
            +    +         E N+ DE   M    D G++             G T  DEA    
Sbjct: 847  MGGVDLGGGDGS---ESNVSDEDVQMAGTEDTGVTGGLVTSGFDWNGSGTTGADEANDSG 903

Query: 1504 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1563
              ++  A  K+K+ R+ EI+      L+   P++  ++ERL+   P+SS +W+KYMAF L
Sbjct: 904  SSSDGQAVPKKKKRRKPEIQVDRTGDLDAHGPQSIADYERLLLGEPDSSLLWLKYMAFQL 963

Query: 1564 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1623
             +++V+KAR IAERAL++I I ++ EK NIW+A  NLEN +GN  ++++  VF+RA QY 
Sbjct: 964  ELSEVDKAREIAERALRSIRIGQDAEKFNIWIAMLNLENIFGN--DDSLEDVFKRACQYN 1021

Query: 1624 DPKKVHLALLGLYERTEQNK 1643
            DP+++H  +  +Y ++ +N+
Sbjct: 1022 DPQEIHERMTSIYIQSGKNE 1041



 Score =  110 bits (274), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 159/320 (49%), Gaps = 16/320 (5%)

Query: 396 HMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL 453
           H+S+ ++  P +KF+ GA++  R+L V  + +++ +T KK+L+ S+      Y++     
Sbjct: 2   HLSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGN 61

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
            + G I  I  HG  V+FY  V+GF P SE+      +PS  + VGQVV    ++     
Sbjct: 62  QSPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAEV 121

Query: 514 RRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R++ +S    P+  +E      + ++ G LVS  V   +   +++ +   G     +  E
Sbjct: 122 RKLVVS-CKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEGSGLV-ARLNAE 179

Query: 569 HLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDA 622
           H+ D    +H + + + I+ G +   L++L  +  + L+  S K SL  + Q  +LP+  
Sbjct: 180 HVTDGQSSKHGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKF 238

Query: 623 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
             +   S V G+V NII  G FV FL  LTGF P+    D   A     Y + Q++ S +
Sbjct: 239 EDLQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFV 298

Query: 683 LDVNSETGRITLSLKQSCCS 702
             +  +  R TLS+K++  S
Sbjct: 299 HSIEDDRQRFTLSMKENQTS 318



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 145/397 (36%), Gaps = 112/397 (28%)

Query: 1067 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG 1126
            ++LQ  +R+F  G  V+  +LS+N EK+ LRL L+            + N     +    
Sbjct: 6    TKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKK----------SLLNSESPAWKEYS 55

Query: 1127 DIVGGRISKILSGVGGLVVQIGPH-----LYGRVH----FTELKNICVSDPLSGYDEGQF 1177
            DI+ G  S       G ++ I PH      YG V      +E+    + DP   +  GQ 
Sbjct: 56   DILPGNQSP------GTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQV 109

Query: 1178 --------------------DPLSGYDE----------GQFVKCKVLEISRTV-----RG 1202
                                DP +  +           G  V C V E S+ V      G
Sbjct: 110  VNVHALTVHAEVRKLVVSCKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEG 169

Query: 1203 TFHV-ELSLRSSLDGMSSTNSSDLST-------------------------------DVD 1230
            +  V  L+     DG SS + S L+                                   
Sbjct: 170  SGLVARLNAEHVTDGQSSKHGSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQAR 229

Query: 1231 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1290
              G+   K EDL     V G+VKN+ + G F+   R L   +    + D +V  P+  + 
Sbjct: 230  QRGELPAKFEDLQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYT 289

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLK---TSDSR---------TASQSEIN-------NLSN 1331
            + + ++  V S+E   +R  +++K   TS  R          A+Q+ IN       +  +
Sbjct: 290  LSQTISSFVHSIEDDRQRFTLSMKENQTSKQRVSDNARPASNANQASINPVDGDIKSFDD 349

Query: 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1368
            L  G I   +I  V+   + + + + N+ G   VSE+
Sbjct: 350  LTFGRITKAKIVSVKETQINVQLAD-NIQGRIDVSEI 385



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 311 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF--EGLVFT-HSDVKPGMV 367
           +++ +++  E+K++EG+ V  RIL     +      LK S    E   +  +SD+ PG  
Sbjct: 3   LSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQ 62

Query: 368 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 425
             G +I++   GAIVQF G V+   P+  MSE  I  P + F VG  +    L V ++
Sbjct: 63  SPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAE 120



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 166/385 (43%), Gaps = 51/385 (13%)

Query: 91  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKPGLLLQG 148
           LSL+ V+ G     +V +I D    ++   P+  G L   +++++  +  DVK    +  
Sbjct: 453 LSLDKVEIGSSWLGFVNNIGDDCLWINI-TPNVRGRLRITDVSDDLSLVGDVKKNFPVGS 511

Query: 149 VVR------SIDRTR-KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 201
            ++      ++D+ R  +     DP          L   +I     G ++  RV  + + 
Sbjct: 512 AIKVHVTGVNVDKNRLDLSAKHGDP----------LNKRTISDFSKGEILLGRVTKVSDR 561

Query: 202 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 261
            V++       G +++  + + + T     ++++++ +   IL VD  ++ + L++ P  
Sbjct: 562 QVLVQLSDTTVGAINLIDMADDY-TKVIPANFHKNEVLRVCILDVDVPNKKILLSVRPSR 620

Query: 262 LHNRAPP---------SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDV 311
           + + + P         S +KV DI  +  V RV + GL + L    T     AYV ISD+
Sbjct: 621 VLSSSLPIEDPEIKSISQLKVNDIV-RGFVRRVANNGLFVTLGHEVT-----AYVRISDL 674

Query: 312 AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVV 368
           ++  ++  + +++    V  RI+            LK S  E       T  D+  G +V
Sbjct: 675 SDSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAPITIRDLNRGQIV 734

Query: 369 KGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
            GKV +V+ FGA +   G   +  LC    M+E ++    K F+ G         VK+K 
Sbjct: 735 TGKVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGDI-------VKAKI 787

Query: 427 ITVTHKKTLVKSKLAILSSYAEATD 451
           + + H K  +   L + +SY + +D
Sbjct: 788 LKIDHDKERI--SLGLKASYFKESD 810



 Score = 48.1 bits (113), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 11/149 (7%)

Query: 1276 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLH 1333
            +LSD  ++ PE++F  G  V+ R+LSV    +++ +TLK S  +S + +  E    S++ 
Sbjct: 2    HLSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKE---YSDIL 58

Query: 1334 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1393
             G+   G I  +  +G  +      + G   VSE+SE ++ +    +  G+ V V  L V
Sbjct: 59   PGNQSPGTIISIHPHGAIVQFYG-EVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTV 117

Query: 1394 DKEKRRISLGMK-----SSYFKNDADNLQ 1417
              E R++ +  K     +  +KN  +N+Q
Sbjct: 118  HAEVRKLVVSCKDPSTSTETYKNAFENIQ 146



 Score = 42.0 bits (97), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 136/319 (42%), Gaps = 29/319 (9%)

Query: 233 YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 292
           + +  +V+ARIL V+   R + LTL   LL++ +P          + S ++  ++  G +
Sbjct: 15  FREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPA-------WKEYSDILPGNQSPGTI 67

Query: 293 LDI-PSTPV-----STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG---LA 343
           + I P   +         ++ +S+++E  ++   + +  G  V V  L   H E    + 
Sbjct: 68  ISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTV-HAEVRKLVV 126

Query: 344 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEI 402
           +    +++ E       +++PG +V   V        +++  G G+ A     H+++ + 
Sbjct: 127 SCKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEGSGLVARLNAEHVTDGQS 186

Query: 403 VKPGKKF---KVGA---ELVFRVLGVKSKRITVTHKKTL--VKSKLAILSSYAEATDRLI 454
            K G      +VG    +LV   +    + I V++K +L   + +  + + + +  +   
Sbjct: 187 SKHGSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKFEDLQEGSK 246

Query: 455 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 514
             G++  I   G FV F  G+ GF P+  +  D   +P   Y + Q +   + S     +
Sbjct: 247 VTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFVHSIEDDRQ 306

Query: 515 RINLSFMMKPT---RVSED 530
           R  LS     T   RVS++
Sbjct: 307 RFTLSMKENQTSKQRVSDN 325


>gi|345568479|gb|EGX51373.1| hypothetical protein AOL_s00054g443 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1795

 Score =  305 bits (781), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 244/901 (27%), Positives = 450/901 (49%), Gaps = 97/901 (10%)

Query: 932  LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN----LFSNFKIGQTVTARI 987
            + +  IT IKP ++ +       GR+ ++E   D  ++       L     +GQ +  ++
Sbjct: 930  ITKGRITAIKPTQINIDLADNVKGRVDVSEFFKDWDSIKNKKHPLLRQGLAVGQEIDVKV 989

Query: 988  IAKSNKPDMKKSFLWELSIKPS-MLTVSEIGSKL-------LFEECDVSIGQRVTGYVYK 1039
            I      D+K      +S + S  L   E+ +K        L +  D+   +    +V  
Sbjct: 990  IGIH---DVKSHKYLPISHRVSGKLPTFELSAKQVTGKANSLVKYSDLKKEETYLAFVNN 1046

Query: 1040 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1099
            V  +   + +S  ++ ++ +L+ + + S L + ++ + +G A+   VL +N +   L L 
Sbjct: 1047 VQQDHLWVNLSPSVRGRVKLLEISEDVSALSDLEKHYPVGTALRVSVLDVNVDTGKLDLT 1106

Query: 1100 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1159
             R       +K +D S+      I EG ++  +++KI  G   ++VQ+   + G      
Sbjct: 1107 ARYLG---GNKPLDWSS------IKEGMMIPAKVTKISEG--KVIVQLSETILG------ 1149

Query: 1160 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1219
              +I ++D    +D+     +  ++    V+  VL +  + +    + LS R S    SS
Sbjct: 1150 --SISLADMADDFDKAD---VKNFNTDSIVRVCVLSVDHSNK---KIRLSTRPSRILDSS 1201

Query: 1220 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1279
                D+          ++   DL      +G+V NV   G +I L     A+  +S+LSD
Sbjct: 1202 AKVRDV---------EVKSAADLRVGGKYRGFVTNVADNGVYIHLGGTAVARARISDLSD 1252

Query: 1280 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1339
             +V+  +K F + +LV G+++SV+  + ++ + LK S     ++  I +  +   G+ V 
Sbjct: 1253 EFVKDWKKGFTVHQLVKGKIMSVDLDTNQISINLKKSVLLGTAKKTIADYKD---GEFVD 1309

Query: 1340 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEK 1397
            G +++V  YG FI I+ + N+ GLCH S++S +  D +   ++  G+ VK KIL VD++K
Sbjct: 1310 GHVRKVTEYGCFIVIDGSDNVSGLCHKSQMSNEKADVDPSKLFGEGDLVKAKILSVDRKK 1369

Query: 1398 RRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSL------------LENSSV 1445
             RIS G+K+SYF+N  D   +  E   ++ I                       L+++S 
Sbjct: 1370 GRISFGLKASYFRNLPDEELVPKESTEEQLIISADEDEEMEDEEEEEEEEGGVKLDSAST 1429

Query: 1446 AVQDMDMESEDGGSLVLAQIESRASVPPLEVN-----LDDEQPDMDNGISQNQGHTDEAK 1500
            A   + +   D  S       S+ + P    +     +DD  PD     S+++G +    
Sbjct: 1430 AADGVTITGIDRPS---TSFFSKFNKPNWTADAAVSAMDDLFPDDAPSDSEDEGDS---- 1482

Query: 1501 TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1560
            T  +K  ++A           I+      L+   P++  ++ERL+ + PN S +W+ YMA
Sbjct: 1483 TKKQKKKKNA-----------IKVDLTGDLDTRQPQSASDYERLLLADPNDSLLWMSYMA 1531

Query: 1561 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1620
            F+++  D+  AR+I+ERA++ I+ R+E+ KLN+W+A  NLE E+G P  E +   F+ A 
Sbjct: 1532 FLVANGDIVTARAISERAVKKIDHRKEDSKLNVWLARLNLELEFGTP--ETLEVAFKSAC 1589

Query: 1621 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQ 1679
            QY D KK+H  L+ +Y +T +++ ADEL   MIKKF    K+W+  +  ++ K + +  +
Sbjct: 1590 QYNDGKKIHQGLVSVYIQTGKHEQADELFQSMIKKFSQDEKIWINYMTYMMEKNRGDDAR 1649

Query: 1680 AVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1738
             ++ RAL ++   K H     + A LE+K+G  ++GR++FE +LS YPKR D+W++Y+D 
Sbjct: 1650 IMLSRALQAIQDTKVHPGLTLKFAQLEYKSGEIEKGRTLFEKLLSAYPKRLDIWNVYIDI 1709

Query: 1739 EIRL-GDVDLIRGLFERAISLS-LPPKKMKFLFKKYLEYEK--SVGEEERIEYVKQKAME 1794
            E +  G +D++R LF R ++   L  KK   +F K++E E+  + G+++R ++V  +A+E
Sbjct: 1710 EAKQEGGIDVVRRLFPRVLATGKLNAKKANGVFNKWMELEEKFAPGDKKRKDHVIAQAVE 1769

Query: 1795 Y 1795
            Y
Sbjct: 1770 Y 1770



 Score =  211 bits (536), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 212/749 (28%), Positives = 349/749 (46%), Gaps = 63/749 (8%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL----------- 48
           ++G ++++ +KD+ I LP  L G   L   ++     L   +E +ED +           
Sbjct: 146 VFGFISKITKKDVAIALPNNLVGYAPLTSISEQYTNQLQASLEQDEDGMDIDKDNAEETE 205

Query: 49  -----LPTIFHVGQLVSCIVLQLDDDKKEIGKRK----IWLSLRLSLLYKGLSLETVQEG 99
                L  +F V Q V   V+ +       G++K    I LSL  +L   G++   + +G
Sbjct: 206 AEIPGLDMLFEVNQPVRAYVMNVSTGGTGSGEKKQRKHIELSLLPTLTNPGITKTEIVKG 265

Query: 100 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKV 159
           + L A VKSIED+G+I+  GL   +GF+ +++        +K G      V  +    KV
Sbjct: 266 ITLQASVKSIEDNGFIMDLGLDFVSGFMGKSDCGAPPNT-IKVGRTFLCHVLGLASGGKV 324

Query: 160 VYLSSD-PDTVSKCVTKDLK---GISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGT 214
           V L+SD   ++     KD     G +ID  +PG M S   V  + +NG++ + +     T
Sbjct: 325 VQLASDFHKSIKGKSGKDAAVGDGPTIDCFLPGTMASKALVTDVQDNGLVCTVMGSIDVT 384

Query: 215 VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS---RAVG--LT----LNPYLLHNR 265
           VD+FH    F +   +  Y     +  R+L   P S   +  G  LT    + P     +
Sbjct: 385 VDLFH-SGCFSSEVLQTKYKAGNHLTVRLLASIPGSDNKKFAGSLLTHVKEMGPQTQSGK 443

Query: 266 APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL--EKKY 323
              S + +G I   + V  +  G+GL+L+I     +T  +V IS ++++++  +     Y
Sbjct: 444 LALSKLPIGAIKSDAAVKHIIPGVGLILNIGLG--NTMVFVHISRISDKKIDSILTTGPY 501

Query: 324 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 383
           K GS   +RIL +  ++GL    ++            DVKPG VVKGK+      G +V+
Sbjct: 502 KVGSKHAIRILDYNSMDGLLLASMEPKILSQRYLRMEDVKPGDVVKGKISRFVGGGMLVE 561

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLA 441
              G++A  P  HMS+  +  P KKF+ GA +  R+L V   S+RI +T KK +V S+  
Sbjct: 562 VEEGLEAYVPEMHMSDIVLQHPEKKFREGAAVKGRILRVDTDSRRIKMTLKKAIVNSEGP 621

Query: 442 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 501
           + + Y +  +   T G I K+   G  + FY  V+GF P SE+      +P   + VGQ 
Sbjct: 622 VFADYIDVEEDEETPGTIVKLMPTGAILEFYGEVRGFLPVSEMSEAFIKDPMEHFKVGQT 681

Query: 502 VKCRIMSSIPASRRINLSFMMKPTRVSEDDL-----VKLGSLVSGVVDVVTPNAVVVYVI 556
           +   ++SS P  +++ LS        S++       + LGS+V G + +   N  VV  +
Sbjct: 682 LNVHVISSDPMEKKVRLSCRSSQADSSKEKAEALQNIALGSIVEGSI-IEKSNDDVVLSL 740

Query: 557 AKGYSKGTIPTEHLADHLEH---ATVMKSVIKPGYEFDQLLVL-DNESSNLL-LSAKYSL 611
             G  KG I    L D  +    AT  K  ++ G +   L+VL  +E  N++ LS+K SL
Sbjct: 741 QDGI-KGLIVLGQLTDGSKEKNLATFKK--LRAGQKLVDLVVLRKDEMRNIVYLSSKPSL 797

Query: 612 INSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 669
           + +++   L      +   S V G+V  I   G FV F+  +T   PR KA+  +  DL 
Sbjct: 798 VKASKSDTLIKSFLDVKIGSAVAGFVKEITHFGVFVAFIDGITALLPR-KALPKEVEDLP 856

Query: 670 K-TYYVGQSVRSNILDVNSETGRITLSLK 697
              Y+  QS+   + D+     + TLSL+
Sbjct: 857 DFGYHRLQSITCYVTDIIPSREQFTLSLR 885



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 24/235 (10%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            ++ED+ P  +V+G +      G  + +   L+A V   ++SD  ++ PEK+F  G  V G
Sbjct: 536  RMEDVKPGDVVKGKISRFVGGGMLVEVEEGLEAYVPEMHMSDIVLQHPEKKFREGAAVKG 595

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            R+L V+  S+R+++TLK    +    SE     +  ++   +   G I ++   G  +  
Sbjct: 596  RILRVDTDSRRIKMTLK----KAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEF 651

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
                + G   VSE+SE  + +    ++ G+ + V ++  D  ++++ L  +SS       
Sbjct: 652  YG-EVRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSS------- 703

Query: 1415 NLQMSSEEESDEAIEEV--GSYNRSSLLENSSVAVQDMDMESEDG--GSLVLAQI 1465
              Q  S +E  EA++ +  GS    S++E S+    D+ +  +DG  G +VL Q+
Sbjct: 704  --QADSSKEKAEALQNIALGSIVEGSIIEKSN---DDVVLSLQDGIKGLIVLGQL 753



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/352 (19%), Positives = 151/352 (42%), Gaps = 17/352 (4%)

Query: 187 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 246
           PG +V  ++   +  G+++         V   H+ +     + +  + +   V  RIL V
Sbjct: 542 PGDVVKGKISRFVGGGMLVEVEEGLEAYVPEMHMSDIV-LQHPEKKFREGAAVKGRILRV 600

Query: 247 DPTSRAVGLTLNPYLLHNRAP--PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 304
           D  SR + +TL   ++++  P    ++ V +  +    +      G +L+          
Sbjct: 601 DTDSRRIKMTLKKAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEFYG---EVRG 657

Query: 305 YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG---LATGILKASAFEGLVFTHSD 361
           ++ +S+++E  ++   + +K G  + V ++    +E    L+    +A + +       +
Sbjct: 658 FLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSSQADSSKEKAEALQN 717

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK---PGKKFKVGAELVFR 418
           +  G +V+G +I   +   ++    G+K L  L  +++    K     KK + G +LV  
Sbjct: 718 IALGSIVEGSIIEKSNDDVVLSLQDGIKGLIVLGQLTDGSKEKNLATFKKLRAGQKLVDL 777

Query: 419 VLGVKSKR---ITVTHKKTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGCFVRFYN 473
           V+  K +    + ++ K +LVK+  +  ++ S+ +        G++ +I   G FV F +
Sbjct: 778 VVLRKDEMRNIVYLSSKPSLVKASKSDTLIKSFLDVKIGSAVAGFVKEITHFGVFVAFID 837

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
           G+    PR  L  +    P   YH  Q + C +   IP+  +  LS   +PT
Sbjct: 838 GITALLPRKALPKEVEDLPDFGYHRLQSITCYVTDIIPSREQFTLSLRPQPT 889



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 143/295 (48%), Gaps = 42/295 (14%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            +  GD+V G+IS+ + G  G++V++   L   V    + +I +  P     E +F     
Sbjct: 540  VKPGDVVKGKISRFVGG--GMLVEVEEGLEAYVPEMHMSDIVLQHP-----EKKFR---- 588

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL---DGMSSTNSSDLSTDVDTPGKHLEKI 1239
              EG  VK ++L +    R    ++++L+ ++   +G    +  D+  D +TPG     I
Sbjct: 589  --EGAAVKGRILRVDTDSR---RIKMTLKKAIVNSEGPVFADYIDVEEDEETPGT----I 639

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L P              G  +    ++   + +S +S+ +++ P + F +G+ +   V
Sbjct: 640  VKLMPT-------------GAILEFYGEVRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHV 686

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
            +S +P+ K+V ++ ++S +  +S+ +   L N+ +G IV G I    +  + +++++  +
Sbjct: 687  ISSDPMEKKVRLSCRSSQA-DSSKEKAEALQNIALGSIVEGSIIEKSNDDVVLSLQD-GI 744

Query: 1360 VGLCHVSELSEDHVD-NIETI--YRAGEK-VKVKILKVDKEKRRISLGMKSSYFK 1410
             GL  + +L++   + N+ T    RAG+K V + +L+ D+ +  + L  K S  K
Sbjct: 745  KGLIVLGQLTDGSKEKNLATFKKLRAGQKLVDLVVLRKDEMRNIVYLSSKPSLVK 799



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 120/274 (43%), Gaps = 40/274 (14%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGY 588
           VK G +V G +       ++V V  +G  +  +P  H++D    H E      + +K   
Sbjct: 540 VKPGDVVKGKISRFVGGGMLVEV-EEGL-EAYVPEMHMSDIVLQHPEKKFREGAAVK--- 594

Query: 589 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 648
              ++L +D +S  + ++ K +++NS   + +D   +  +    G +  ++ TG  + F 
Sbjct: 595 --GRILRVDTDSRRIKMTLKKAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEFY 652

Query: 649 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 708
           G + GF P S+  +    D  + + VGQ++  +++  +    ++ LS + S   S+    
Sbjct: 653 GEVRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSSQADSS---- 708

Query: 709 MQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 768
                  +EK   LQ+               +GS++EG + E ++  VV+S ++   + G
Sbjct: 709 -------KEKAEALQN-------------IALGSIVEGSIIEKSNDDVVLSLQDG--IKG 746

Query: 769 FITHHQLAGATVESGSVIQAAILDVAKAERLVDL 802
            I   QL   + E      A    +   ++LVDL
Sbjct: 747 LIVLGQLTDGSKEKN---LATFKKLRAGQKLVDL 777



 Score = 45.1 bits (105), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 53/263 (20%), Positives = 104/263 (39%), Gaps = 48/263 (18%)

Query: 563  GTIPTEHLADHLEHATV----MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL 618
            G+I    +AD  + A V      S+++       +L +D+ +  + LS + S I  +   
Sbjct: 1149 GSISLADMADDFDKADVKNFNTDSIVRVC-----VLSVDHSNKKIRLSTRPSRILDSSAK 1203

Query: 619  PSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 673
              D     A+ +       G+V N+ + G ++   G     A  S   D    D  K + 
Sbjct: 1204 VRDVEVKSAADLRVGGKYRGFVTNVADNGVYIHLGGTAVARARISDLSDEFVKDWKKGFT 1263

Query: 674  VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 733
            V Q V+  I+ V+ +T +I+++LK+S              LL             G+  K
Sbjct: 1264 VHQLVKGKIMSVDLDTNQISINLKKSV-------------LL-------------GTAKK 1297

Query: 734  WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSV 785
             +  +  G  ++G V +  ++G  +  +   +V G     Q++    +         G +
Sbjct: 1298 TIADYKDGEFVDGHVRKVTEYGCFIVIDGSDNVSGLCHKSQMSNEKADVDPSKLFGEGDL 1357

Query: 786  IQAAILDVAKAERLVDLSLKTVF 808
            ++A IL V + +  +   LK  +
Sbjct: 1358 VKAKILSVDRKKGRISFGLKASY 1380



 Score = 44.7 bits (104), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 17/311 (5%)

Query: 53   FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 112
            + VG  +   VL ++ D       K+ L+ R     K L   +++EGM++ A V  I + 
Sbjct: 1083 YPVGTALRVSVLDVNVDTG-----KLDLTARYLGGNKPLDWSSIKEGMMIPAKVTKISEG 1137

Query: 113  GYILHFGLPSFTGFLPRNNLAEN-SGIDVK---PGLLLQGVVRSIDRTRKVVYLSSDPDT 168
              I+     +  G +   ++A++    DVK      +++  V S+D + K + LS+ P  
Sbjct: 1138 KVIVQLS-ETILGSISLADMADDFDKADVKNFNTDSIVRVCVLSVDHSNKKIRLSTRPSR 1196

Query: 169  V--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 226
            +  S    +D++  S   L  G      V ++ +NGV +           I  L + F  
Sbjct: 1197 ILDSSAKVRDVEVKSAADLRVGGKYRGFVTNVADNGVYIHLGGTAVARARISDLSDEF-V 1255

Query: 227  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS--HVKVGDIYDQSKVVR 284
             +WK  +  H+ V  +I+ VD  +  + + L   +L   A  +    K G+  D      
Sbjct: 1256 KDWKKGFTVHQLVKGKIMSVDLDTNQISINLKKSVLLGTAKKTIADYKDGEFVDGHVRKV 1315

Query: 285  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 344
             + G  +++D  S  VS   + +     + +V    K + EG  V+ +IL     +G  +
Sbjct: 1316 TEYGCFIVID-GSDNVSGLCHKSQMSNEKADVDP-SKLFGEGDLVKAKILSVDRKKGRIS 1373

Query: 345  GILKASAFEGL 355
              LKAS F  L
Sbjct: 1374 FGLKASYFRNL 1384


>gi|340381756|ref|XP_003389387.1| PREDICTED: protein RRP5 homolog [Amphimedon queenslandica]
          Length = 1804

 Score =  303 bits (777), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 348/1349 (25%), Positives = 588/1349 (43%), Gaps = 138/1349 (10%)

Query: 7    VAEVNEKDLVICLPGGLRGLARAADALDPILD--------NEIEANEDNLLPTIFHVGQL 58
            + EV +  L++ LP  + G     D  DP+           E +A +   L  ++ VGQL
Sbjct: 132  IKEVQQYRLLMSLPFNMTGSVNIGDVSDPLSSLINTGGEGEEFDAKKVPDLSKMYRVGQL 191

Query: 59   VSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF 118
            +SC VL+++D +K++      LS+   L+   L+ + +   M+++  V SIEDHGYI+ F
Sbjct: 192  LSCYVLKVNDSEKQV-----QLSINPKLINNQLTAKNLIPNMIVSGCVTSIEDHGYIIDF 246

Query: 119  GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSI---DRTRKVVYLSSDPDTV-SKCVT 174
            G+   T FL    L +NSG +    L +  VV ++     T + + LS  PD + S  ++
Sbjct: 247  GVSDRTEFL----LNKNSGSE---SLYIGQVVSTLILPGPTARALPLSIAPDILYSSILS 299

Query: 175  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
            +    +++  ++PG +++  V+      +++SFL  F G V   HL    P T+   DY 
Sbjct: 300  QSSSAVTLPSILPGQLLNVSVKQTTPTSLIVSFLGGFEGYVHYQHLPT--PGTSL-TDYA 356

Query: 235  QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLL 293
             +KK+ AR+L++D  ++ +GLTL   ++       S +++G I  ++ V RV+   G++L
Sbjct: 357  INKKLKARVLWLDTNNKKIGLTLQNEIIKGTGYDFSGMEIGLILHEAIVTRVESRHGVIL 416

Query: 294  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 353
             +P+    + AY  +  +  E   K+ KK+  GS   VRI+ + +++GLA   +K +  E
Sbjct: 417  KLPN---GSFAYSPVRLMYSERTDKISKKHCVGSVHSVRIVQYNYIDGLAIVSMKENTLE 473

Query: 354  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE-FEIVKPGKKFKVG 412
               FT +DV PG ++KG V  +   G  V     +   CPL  +S+   + K  KK   G
Sbjct: 474  EEYFTINDVTPGSIIKGNVTKISDKGISVSINNRLNGFCPLSQLSDSAHLKKTLKKLSEG 533

Query: 413  AELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 470
            A +  RVL V +    I +T KK++V   L  L+            G I  I   G  +R
Sbjct: 534  AAVKCRVLKVDTDNNFILLTKKKSIVSCDLPPLTDVRTVKPGEEYTGEIINIVDKGLIIR 593

Query: 471  FYNGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 527
            FYN + GF P  EL          PS  + +GQV++ R++S    + ++ LS   +    
Sbjct: 594  FYNNITGFLPNVELSSTSTQVILSPSQFFKIGQVLQTRVLSVDIDNNKVRLSLRKQAPPT 653

Query: 528  SEDDLVKLGSLVSGVVDVVTPNAV-------VVYVIAKGYSKGTIPTEHLADHLEHATVM 580
            +E    + G L+   V  V  N V       ++++     S       HL  +       
Sbjct: 654  TESQ-AQPGDLLECEVTGVAGNGVSLLCNDELIFIPTPCLSDYAPLNGHLLAYHGRMLSD 712

Query: 581  KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS-------AQQLPSDASHIHPNSVVHG 633
            KS     Y    +LVL   +S   +S     I          ++ P     +H   V+ G
Sbjct: 713  KSDRNEKYIISNVLVLSGATS---VSPAVGCIKKLIIDDLLKEKYPKTFEELHVGMVLVG 769

Query: 634  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
             V  I   G F+ F   L G AP     D    D +  Y   Q+V + + ++N     IT
Sbjct: 770  VVKRIYSYGVFIEFPNGLVGLAPLKYLSDEYITDTNGVYGERQTVFAKVHELNEVRKNIT 829

Query: 694  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII---GSVIEGKVHE 750
            +SLK   CS    S      L++  +    ++     +L +  G +    G++++G+++ 
Sbjct: 830  ISLK---CSDLKLSLTHSLPLVQSIVLKQFANLLKEKDLIFSNGVVYYRPGTLVKGQINN 886

Query: 751  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 810
             ++    V+ E      G+++     G  V  G  +   ++DV        +SL +  + 
Sbjct: 887  ISNSLFHVTLESGPSATGYVS--MATGGGVCPGDHVTCCVIDVDMETGNYWVSLNSKVM- 943

Query: 811  RFREANSNRQAQKKKRKREASKDLGVH------QTVNAIVEIVKENYLVLSLPEYNHSI- 863
                    ++ +K+K+ + AS D+  +       TV   +E +   YL+ S+   N S+ 
Sbjct: 944  ----KERGKEEEKQKKGKTASGDINSYFKLEAGHTVTGHIEYINNYYLICSVSTLNQSVL 999

Query: 864  --GYASVSDYNTQKFPQKQFLNGQSVIATVM---ALPSSSTAGRLLLLLKAISETETSSS 918
              G      +    +  K    G  V  TV+   +L +   +G  + LL    E+ + S 
Sbjct: 1000 AYGLFDSGQWGVIPYQLKHLKPGAKVNGTVLQSSSLFNGKMSGPPIFLL---GESNSLSQ 1056

Query: 919  KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 978
            K   ++ S  +G +V A+I +I   +L + FG  + GRIH T + DD       L S F 
Sbjct: 1057 KIVAQQLSVTIGDIVDAKIIKISDSQLSVSFG-PWKGRIHSTLLADDMEKGSYPL-SKFS 1114

Query: 979  IGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFE------ECDVSIGQR 1032
            +G  + A+I+    +           S+KP  +       K LF+      E   + G +
Sbjct: 1115 VGDVMKAKILKYRKRAGH--------SVKPGTVHFELTTRKSLFDAEKAKIESSFTTGDK 1166

Query: 1033 VTGYVYKVDNEWALLTISRHLKAQLFIL---DSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
              G V +V     L+ I+  + A +  L    +  E   L +  + F++G+ V   V   
Sbjct: 1167 RMGVVREVTKSRLLVDITPEVSAVICPLLAGSNVNEDGNLLKLTKCFNVGEVVECTV--- 1223

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
                           D I       S       I+ GD V GR++ +     GLV+ I  
Sbjct: 1224 --------------GDCIEKGQYHGSLTGSLPVINIGDTVCGRVTDV--QYSGLVLSINH 1267

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
            +L G V+ T + +  V  PL  ++ G  D LS         C V  I +T +      LS
Sbjct: 1268 YLNGIVYLTNISDYYVPRPLQYFNIG--DKLS---------CVV--IGKTSK---QFNLS 1311

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
            LR S  G++   +     D   P K +  I DL    +V+GYV +VT  G F+ L   + 
Sbjct: 1312 LRKSHTGIN-IPTLPAQPDGSEPDKEINNIADLQEVGVVRGYVSSVTKYGIFVKLGPDVV 1370

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
             +V+L NLSD YV++ E    +G LV  +
Sbjct: 1371 GRVMLKNLSDQYVQNYESCVNVGDLVRAK 1399



 Score =  263 bits (672), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 180/573 (31%), Positives = 313/573 (54%), Gaps = 49/573 (8%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V G V +V   G  + ++  L+  V L+N+SD YV  P + F IG  ++  V+     SK
Sbjct: 1249 VCGRVTDVQYSGLVLSINHYLNGIVYLTNISDYYVPRPLQYFNIGDKLSCVVIG--KTSK 1306

Query: 1308 RVEVTLKTSDSR------------TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
            +  ++L+ S +             +    EINN+++L    +V G +  V  YG+F+ + 
Sbjct: 1307 QFNLSLRKSHTGINIPTLPAQPDGSEPDKEINNIADLQEVGVVRGYVSSVTKYGIFVKL- 1365

Query: 1356 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1415
              ++VG   +  LS+ +V N E+    G+ V+ K+++ + ++            K  A  
Sbjct: 1366 GPDVVGRVMLKNLSDQYVQNYESCVNVGDLVRAKVVEFEVQEVEGVATKGKEKKKKYAIG 1425

Query: 1416 LQMS---------SEEESD----EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL 1462
            +            SE ESD    + IEE     + S+LE++    +   +E ++      
Sbjct: 1426 IDEEEEEEELVEMSEGESDTMDQQEIEE-----KESVLEDTKRLKKKRKLEDKE------ 1474

Query: 1463 AQIESRASVPPLEVNLD-DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE 1521
               E   S+ PL V    D  P  D    ++   T+E   I +K ++  KK  K+  E +
Sbjct: 1475 ---EDSCSMTPLPVTGGWDYNPSNDTIEERDDEDTNEV--ISKKKSKRQKKAIKKAEELQ 1529

Query: 1522 IRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            +   E  L++    P++ D+F+RL+ ++PNSS +W++YMAF L  A+V+KAR+ AER L 
Sbjct: 1530 LYKREHSLMDTSRLPQSADDFDRLLVANPNSSSLWLQYMAFYLHTAEVDKARATAERGLA 1589

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
             I+ REE+EKLN+WV + NLEN YG+   E++ +VF+RALQ  D  +++  L+ +Y  + 
Sbjct: 1590 AISFREEDEKLNLWVGFLNLENMYGD--SESLDQVFKRALQQNDQFEIYTRLIDIYVTSN 1647

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1699
            + + AD+L   M KKF  + +VW +  + L++Q + +  + ++QR+  SL + +H+    
Sbjct: 1648 KPEYADQLYQIMCKKFSSNIQVWSQYGRFLMEQGKADLARKILQRSFKSLTKKQHVDITK 1707

Query: 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759
            Q A  EFK G  +RG ++FE ++S YP++ D+WS+Y+D   + G++D +R +FERA+SL 
Sbjct: 1708 QFAQFEFKYGEMERGCTLFENLVSSYPRKVDIWSVYIDMLTKKGEMDRVRDVFERAVSLK 1767

Query: 1760 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1792
            L   K +FL+K+Y+E+E+  G +  +E V+ K+
Sbjct: 1768 LSSVKKQFLYKRYIEFERKHGTQSLVETVQAKS 1800



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1391
            LHVG +++G +KR+ SYG+FI   N  LVGL  +  LS++++ +   +Y   + V  K+ 
Sbjct: 761  LHVGMVLVGVVKRIYSYGVFIEFPN-GLVGLAPLKYLSDEYITDTNGVYGERQTVFAKVH 819

Query: 1392 KVDKEKRRISLGMKSSYFK 1410
            ++++ ++ I++ +K S  K
Sbjct: 820  ELNEVRKNITISLKCSDLK 838



 Score = 47.0 bits (110), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 166/412 (40%), Gaps = 73/412 (17%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 988
            G L+   + +  P  L + F  GF G +H   +    +++     +++ I + + AR++ 
Sbjct: 313  GQLLNVSVKQTTPTSLIVSFLGGFEGYVHYQHLPTPGTSL-----TDYAINKKLKARVLW 367

Query: 989  AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1048
              +N   +  +   E+ IK +    S +   L+  E  V+  +   G + K+ N      
Sbjct: 368  LDTNNKKIGLTLQNEI-IKGTGYDFSGMEIGLILHEAIVTRVESRHGVILKLPNG----- 421

Query: 1049 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA-VTGHVLSINKEKKLLRLVLRPFQDGI 1107
                          AY P  L   +R   I K    G V S+       R+V   + DG+
Sbjct: 422  ------------SFAYSPVRLMYSERTDKISKKHCVGSVHSV-------RIVQYNYIDGL 462

Query: 1108 SDKTVDISNDNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1163
            +  ++  +    + F    +  G I+ G ++KI     G+ V I   L G    ++L + 
Sbjct: 463  AIVSMKENTLEEEYFTINDVTPGSIIKGNVTKISDK--GISVSINNRLNGFCPLSQLSD- 519

Query: 1164 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1223
                  S + +     LS   EG  VKC+VL++       F +       L    S  S 
Sbjct: 520  ------SAHLKKTLKKLS---EGAAVKCRVLKVD--TDNNFIL-------LTKKKSIVSC 561

Query: 1224 DLS--TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA---KVLLSNLS 1278
            DL   TDV T          + P     G + N+  KG  I     +      V LS+ S
Sbjct: 562  DLPPLTDVRT----------VKPGEEYTGEIINIVDKGLIIRFYNNITGFLPNVELSSTS 611

Query: 1279 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL-KTSDSRTASQSEINNL 1329
               + SP + F IG+++  RVLSV+  + +V ++L K +   T SQ++  +L
Sbjct: 612  TQVILSPSQFFKIGQVLQTRVLSVDIDNNKVRLSLRKQAPPTTESQAQPGDL 663


>gi|451995534|gb|EMD88002.1| hypothetical protein COCHEDRAFT_1183202 [Cochliobolus heterostrophus
            C5]
          Length = 1784

 Score =  303 bits (777), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 239/895 (26%), Positives = 454/895 (50%), Gaps = 89/895 (9%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 987
            G+L+   +  +K  +L ++      GRI ++E+ ++  ++ +     ++FK+  T+ AR+
Sbjct: 927  GTLMTVRVRSVKDTQLNVELAANVPGRISVSELFENWDSIPDKKRPTAHFKMNDTIQARV 986

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV------SIGQRVTGYVYK 1039
            + + +  + +  FL   S   +  T  E+ +K   +  E DV      + G     ++  
Sbjct: 987  LGRHDPRNFR--FLPITSRSSNKTTTYEMTAKTEEIKSEADVLSLDKVTTGSSYIAFINN 1044

Query: 1040 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1099
            + +    + IS +++ ++   D   +  +L + ++ F +G A+   V +++     L L 
Sbjct: 1045 IADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGSALKVRVKAVDAVNGKLDLT 1104

Query: 1100 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1159
                   ++ K++ + +      +  G ++  R++K+      +VVQI   +   +   +
Sbjct: 1105 A---ASTVTGKSLSLQD------LKVGHVLPARVTKLHDA--SIVVQINESIAAPIFMEQ 1153

Query: 1160 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1219
            L +         YD+ Q           FV   VL +         +++ + +   G+S+
Sbjct: 1154 LAD--------DYDKAQ--------PKNFVVGDVLRVCV-------IDIDIPNKKLGLSA 1190

Query: 1220 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1279
              S  LS+ +      +     L  N +V+G+VK++ + G ++ L   ++A V +S+LSD
Sbjct: 1191 RPSRVLSSSLPVKDPEITDRAQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSD 1250

Query: 1280 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1339
             Y++  +  F + +LV G+V+S +   +  +++LKTS  +T    E  + +NL +G IV 
Sbjct: 1251 EYIKDWKSAFHVDQLVTGKVISNKDDQRNPQLSLKTSVIKT-DYVEPLDFANLKIGQIVT 1309

Query: 1340 GQIKRVESYGLFITIENTNLV-GLCHVSELSEDHVDN--IETIYRAGEKVKVKILKVDKE 1396
             +++ VE YG+F+ ++N+N V GLCH+S++++  VD   ++ +Y+  + VK K++KVD +
Sbjct: 1310 AKVRHVEDYGVFLIVDNSNNVSGLCHISQIADALVDKEKLKDMYKKDDVVKAKVIKVDPK 1369

Query: 1397 KRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES-- 1454
             R++S  +K S  K+  ++ +M  E+ SD    E G  +    L++      D+DM S  
Sbjct: 1370 SRKVSFTLKYSQVKDQGEDEEM--EDASDVEQSEDGYSDGGIELDD------DVDMRSVK 1421

Query: 1455 --EDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKK 1512
              E    + LA  +S       + + +DE      G+S + G      T+D    + A +
Sbjct: 1422 SAESDDDIELADADSS------DESDNDESKATAKGLSTS-GFDWTGATLDFDQQKGAAE 1474

Query: 1513 KEKEEREQEIRAA-------EERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFML 1563
             E E+   + +         E+R  + DA  P++  ++ERL+   PNS+ +W++YM F  
Sbjct: 1475 SESEDDAPKKKKKSKKATIKEDRTGDLDAYGPQSVADYERLLLGQPNSAELWVRYMVFQR 1534

Query: 1564 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1623
             + ++EKAR IA RAL TIN REE EKL++W A  +LEN++ +  ++A+  VF+ A Q  
Sbjct: 1535 EVNEIEKARQIARRALATINPREEKEKLDVWTALLHLENDFSS--DDAINAVFKEACQNN 1592

Query: 1624 DPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQQQEG---- 1677
            D +++H  ++ +Y  + +   ADEL   M+K   F    K WL     L+   Q      
Sbjct: 1593 DEREIHERMIKIYISSGKIDKADELYQSMMKNKSFTADPKFWLSYAAFLMDVIQPPSPAR 1652

Query: 1678 VQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIY 1735
             +A++QRA  S+   +H     + A LEFK  NG  +RGR++FEG++  + K+ D+W +Y
Sbjct: 1653 ARALLQRATQSVAAAQHRYLTQKFAALEFKSPNGDTERGRTIFEGLVDTFAKKGDVWDMY 1712

Query: 1736 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1790
            L  E   G+ D +R LFER   +     +++ +FKK+ E+E SVG ++ +E VK+
Sbjct: 1713 LMLEQSHGEADKVRDLFERMTKVG-KSSRIRGVFKKWAEWENSVGNKKGVEKVKK 1766



 Score =  188 bits (477), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 202/748 (27%), Positives = 337/748 (45%), Gaps = 66/748 (8%)

Query: 7   VAEVNEKDLVICLPGGLRG---LARAADALDPIL---------DNEIEANEDNL----LP 50
           + +++ +DLV+ LP  L G   L   +D L+  L         D E  +++D+     L 
Sbjct: 150 ITDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKEDESDKEEGSDKDDFEDVDLK 209

Query: 51  TIFHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
            +F VGQ L +CI     +  K   ++++ LS+   L+  GL+   +    ++ A V S 
Sbjct: 210 DLFSVGQYLRACITATSSEGAK--ARKRLELSIEPKLVNTGLTKRKIPVNGMIQASVVSN 267

Query: 110 EDHGYILHFGLPSFT--GFLPRNNLAENS-GIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 166
           EDHG ++  GL   T  GFLP+  L  N     V+ G +   ++  ++   ++V LS+D 
Sbjct: 268 EDHGLVMDLGLNDATLKGFLPKGELGPNLLHSKVQEGAVFMCLITGLNSDGRIVKLSAD- 326

Query: 167 DTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 223
            T +  +TK     +  +ID+ +PG  V   V     N +    L     T D +H   T
Sbjct: 327 HTKAGNLTKGNTLTEAPTIDVFLPGTAVDLLVTENTPNTITGKILGLIDATADAYHSGAT 386

Query: 224 FPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL----------HNRAPP-SH 270
              T+    +    KV AR+LF  P S  R VG++L  ++L            R PP   
Sbjct: 387 EKATDMSQKHKIGSKVKARVLFTCPGSDPRKVGVSLLDHVLSLSTRMSGKPKERKPPIDL 446

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGS 327
           + +  I + +KVV+V    G   D+    V    +  IS +++++V  L ++   +K  S
Sbjct: 447 LPISTIVESAKVVKVAPSQGAFFDLGIKDVV--GFAHISRLSDDKVDILSEEAGAFKLDS 504

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IV 382
             + RI+G+  L+GL    L+    +       D+K G VVKGKV  +  D  GA   +V
Sbjct: 505 KHKARIVGYNALDGLFQLSLEKKVIDQPFLRIEDIKAGEVVKGKVHKLFADKTGATAVLV 564

Query: 383 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKL 440
               G+  L P  H+++  +  P +KF+ G  +  RVL  +  R  I +T KK+LV S++
Sbjct: 565 HLSDGITGLVPEMHLADVRLQHPERKFREGLPVTARVLYTEPARHQIHLTLKKSLVNSEV 624

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
              ++Y   ++     G + ++ ++G  V+FYN V+ + P +E+      + +  +H GQ
Sbjct: 625 KPWTNYDMISEGATGPGILVRVRRNGATVQFYNRVRAWLPVAEMSEAFIHDATRHFHAGQ 684

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYV 555
           VV  R++ S+ A  R  L     P  V  +     + +  G +V G V V   +      
Sbjct: 685 VVNVRVL-SVDAKERQLLVSCKDPAAVDTNKEAAFNALNPGGIVKGTV-VEKSDESATLD 742

Query: 556 IAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSL 611
           I  G  KG +   HL D  E   +  MK  I+ G   + L++L    +S    +S K SL
Sbjct: 743 IGNGV-KGILRLGHLTDGSEKKDISTMKK-IRVGGTLEDLVILTKHGKSKTATVSNKPSL 800

Query: 612 INSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 669
              AQ  +L      +     VHG+V  I+    FV     ++G   RS+  +   A   
Sbjct: 801 RKDAQASKLAISIEDLQAGETVHGFVRGILSDKVFVELGNGISGALFRSQLPEDMAAAPE 860

Query: 670 KTYYVGQSVRSNILDVNSETGRITLSLK 697
                 QS+ + +  V+   G   LS+K
Sbjct: 861 FGLRKDQSITARVTHVDVGKGLFWLSMK 888



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 1238 KIEDLSPNMIVQG-----YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            +IED+    +V+G     +     +    + LS  +   V   +L+D  ++ PE++F  G
Sbjct: 535  RIEDIKAGEVVKGKVHKLFADKTGATAVLVHLSDGITGLVPEMHLADVRLQHPERKFREG 594

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYG 1349
              V  RVL  EP   ++ +TLK    ++   SE+   +N  +   G    G + RV   G
Sbjct: 595  LPVTARVLYTEPARHQIHLTLK----KSLVNSEVKPWTNYDMISEGATGPGILVRVRRNG 650

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              +   N  +     V+E+SE  + +    + AG+ V V++L VD ++R++ +  K
Sbjct: 651  ATVQFYN-RVRAWLPVAEMSEAFIHDATRHFHAGQVVNVRVLSVDAKERQLLVSCK 705



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 177/447 (39%), Gaps = 84/447 (18%)

Query: 404  KPGKKFKVGAELVFRVLG-------------VKSKRITVTHKKTL----VKSKLAILSSY 446
            +P   FK+   +  RVLG              +S   T T++ T     +KS+  +LS  
Sbjct: 971  RPTAHFKMNDTIQARVLGRHDPRNFRFLPITSRSSNKTTTYEMTAKTEEIKSEADVLS-- 1028

Query: 447  AEATDRLITH----GWITKIEKHGCFVRFYNGVQGFAPRSEL--GLDPGCEPSSMYHVGQ 500
                D++ T      +I  I     +V     ++G     +L   L+   +    + VG 
Sbjct: 1029 ---LDKVTTGSSYIAFINNIADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGS 1085

Query: 501  VVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYV--- 555
             +K R+ +    + +++L+     T   +S  DL K+G ++   V  +   ++VV +   
Sbjct: 1086 ALKVRVKAVDAVNGKLDLTAASTVTGKSLSLQDL-KVGHVLPARVTKLHDASIVVQINES 1144

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLIN 613
            IA       I  E LAD  + A     V+    +  ++ V+D +  N  L LSA+ S + 
Sbjct: 1145 IA-----APIFMEQLADDYDKAQPKNFVVG---DVLRVCVIDIDIPNKKLGLSARPSRVL 1196

Query: 614  SAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 667
            S+  LP      +D + +  N VV G+V +I   G +VR    +  +   S   D    D
Sbjct: 1197 SSS-LPVKDPEITDRAQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSDEYIKD 1255

Query: 668  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 727
                ++V Q V   ++    +     LSLK S         ++  ++     A L+    
Sbjct: 1256 WKSAFHVDQLVTGKVISNKDDQRNPQLSLKTSV--------IKTDYVEPLDFANLK---- 1303

Query: 728  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------ 781
                        IG ++  KV    D+GV +  +  ++V G     Q+A A V+      
Sbjct: 1304 ------------IGQIVTAKVRHVEDYGVFLIVDNSNNVSGLCHISQIADALVDKEKLKD 1351

Query: 782  ---SGSVIQAAILDVAKAERLVDLSLK 805
                  V++A ++ V    R V  +LK
Sbjct: 1352 MYKKDDVVKAKVIKVDPKSRKVSFTLK 1378



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 24/186 (12%)

Query: 533 VKLGSLVSGVV-----DVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 586
           +K G +V G V     D     AV+V+ ++ G + G +P  HLAD  L+H         P
Sbjct: 539 IKAGEVVKGKVHKLFADKTGATAVLVH-LSDGIT-GLVPEMHLADVRLQH---------P 587

Query: 587 GYEFDQLL-----VLDNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 639
             +F + L     VL  E +   + L+ K SL+NS  +  ++   I   +   G +  + 
Sbjct: 588 ERKFREGLPVTARVLYTEPARHQIHLTLKKSLVNSEVKPWTNYDMISEGATGPGILVRVR 647

Query: 640 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
             G  V+F  R+  + P ++  +    D ++ ++ GQ V   +L V+++  ++ +S K  
Sbjct: 648 RNGATVQFYNRVRAWLPVAEMSEAFIHDATRHFHAGQVVNVRVLSVDAKERQLLVSCKDP 707

Query: 700 CCSSTD 705
               T+
Sbjct: 708 AAVDTN 713



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 109/518 (21%), Positives = 211/518 (40%), Gaps = 68/518 (13%)

Query: 905  LLLKAISETETSSSKRAKKKSSYD---VGSLVQ-AEITEIKP-----LELRLKFGIGFHG 955
            LL   +S +   S K  ++K   D   + ++V+ A++ ++ P      +L +K  +GF  
Sbjct: 422  LLDHVLSLSTRMSGKPKERKPPIDLLPISTIVESAKVVKVAPSQGAFFDLGIKDVVGF-- 479

Query: 956  RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE 1015
              HI+ ++DDK +++      FK+     ARI+   N  D     L++LS++  ++    
Sbjct: 480  -AHISRLSDDKVDILSEEAGAFKLDSKHKARIVG-YNALDG----LFQLSLEKKVI---- 529

Query: 1016 IGSKLLFEECDVSIGQRVTGYVYKV-DNEWALLTISRHLKAQL--FILDSAYEPSELQEF 1072
               +      D+  G+ V G V+K+  ++     +  HL   +   + +       LQ  
Sbjct: 530  --DQPFLRIEDIKAGEVVKGKVHKLFADKTGATAVLVHLSDGITGLVPEMHLADVRLQHP 587

Query: 1073 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1132
            +R+F  G  VT  VL     +  + L L+  +  ++ +    +N +M   I EG    G 
Sbjct: 588  ERKFREGLPVTARVLYTEPARHQIHLTLK--KSLVNSEVKPWTNYDM---ISEGATGPGI 642

Query: 1133 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1192
            + ++     G  VQ    +   +   E+    +            D    +  GQ V  +
Sbjct: 643  LVRVRR--NGATVQFYNRVRAWLPVAEMSEAFI-----------HDATRHFHAGQVVNVR 689

Query: 1193 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1252
            VL +    R               +S  + + + T+ +           L+P  IV+G V
Sbjct: 690  VLSVDAKERQLL------------VSCKDPAAVDTNKEAA------FNALNPGGIVKGTV 731

Query: 1253 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE---SPEKEFPIGKLVAGRV-LSVEPLSKR 1308
               + +   + +   +   + L +L+DG  +   S  K+  +G  +   V L+    SK 
Sbjct: 732  VEKSDESATLDIGNGVKGILRLGHLTDGSEKKDISTMKKIRVGGTLEDLVILTKHGKSKT 791

Query: 1309 VEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
              V+ K S  + A  S++  ++ +L  G+ V G ++ + S  +F+ + N  + G    S+
Sbjct: 792  ATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGILSDKVFVELGN-GISGALFRSQ 850

Query: 1368 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            L ED     E   R  + +  ++  VD  K    L MK
Sbjct: 851  LPEDMAAAPEFGLRKDQSITARVTHVDVGKGLFWLSMK 888


>gi|307110620|gb|EFN58856.1| hypothetical protein CHLNCDRAFT_19641 [Chlorella variabilis]
          Length = 288

 Score =  300 bits (769), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 143/269 (53%), Positives = 200/269 (74%), Gaps = 3/269 (1%)

Query: 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1593
            AP +  E+E+LV S+PNSS+VWI+Y AF++S+ +++KAR++A+RALQTI+ REE EK N+
Sbjct: 21   APSSITEYEQLVLSTPNSSYVWIQYFAFLISLGELDKARALADRALQTISYREEGEKFNV 80

Query: 1594 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1653
            WVAY N+EN YG+  E+A + +  RAL + D ++++LA + ++ERT +  L ++ L  M 
Sbjct: 81   WVAYLNMENLYGS--EDASLALLSRALAHTDARRMYLAAVDIFERTHKEGLVEQCLKAMT 138

Query: 1654 KKFKHSCKVWLRRVQ-RLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            +KF  S +VWLR V+ RL     EG +  + R+L SLP+ +HI+ ISQT +LEFK G A+
Sbjct: 139  RKFSDSAEVWLRAVRYRLASGDAEGARKTLDRSLQSLPQFEHIRMISQTGLLEFKIGDAE 198

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
            RGRS+FEG+L  YPKR DLWS+YLDQE+  GD   IR LFERA  L LPPKKMKFLFK+Y
Sbjct: 199  RGRSIFEGVLRNYPKRLDLWSVYLDQEVAAGDPQRIRALFERATHLQLPPKKMKFLFKRY 258

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            L+YEK+ G    +E+VK++A+EYVE+  A
Sbjct: 259  LDYEKAHGTAAGVEHVKKRALEYVEAQAA 287


>gi|358056290|dbj|GAA97773.1| hypothetical protein E5Q_04452 [Mixia osmundae IAM 14324]
          Length = 1414

 Score =  300 bits (768), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 264/952 (27%), Positives = 449/952 (47%), Gaps = 137/952 (14%)

Query: 875  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK----AISETETSSSKRAKKKSSYDVG 930
            K P+K+F  G  V   + A  S S+  ++++ LK    A       S    K + +YD  
Sbjct: 559  KHPEKRFKIGDVVKGRIFAADSESS--KIVVTLKKSLLASDLPVPQSLADVKPQQAYDA- 615

Query: 931  SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 990
              V ++I E K L + L     F G   I  +++     V+NL + +K GQ +  RI+  
Sbjct: 616  --VLSKIME-KALLVDL-----FGGARAIIPISEAGQGFVDNLAALYKEGQRLQVRIMHV 667

Query: 991  SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1050
                    + L E  +          G   L     + +GQ+    +  + N+  +L I+
Sbjct: 668  DTSAGRITASLRERDLD---------GVAALE---GLKVGQKTEAVIAALHNDNIVLEIA 715

Query: 1051 RHLKAQLFILDSAYEPS---ELQEFQRRFHIGKAVTG-HVLSINKEKKLLRLVLRPFQ-- 1104
               KA+  +  +A+         E ++R  +G+ +    V+S N +K +  L        
Sbjct: 716  PS-KARGLLSYTAHARQLGVATDELKQRIAVGQLLKDLTVVSKNTQKGIAILSSGSTSTN 774

Query: 1105 ---DGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1159
               +GISD         M  F  +  G+   G+I  I S   GL VQ+   L    H+T 
Sbjct: 775  SSANGISD---------MLQFESVAVGETYAGKI--IGSAPQGLHVQLSRALRALAHWT- 822

Query: 1160 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1219
                   D L  +D     P      G  V C ++      R    V++SLR S+   ++
Sbjct: 823  -------DVLDDFDAALPAP------GTVVSCNIVGKDEAAR---RVDVSLRPSVMADNA 866

Query: 1220 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1279
              S      +  P   +  I++L     ++G+V NV   G F+ + R L A+V +  L D
Sbjct: 867  EGS------ILDP--EIISIDELRIGQKIRGFVVNVADSGLFVSVGRSLTARVQIRELFD 918

Query: 1280 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1339
             YV   +  F +G+LV+G +L ++P   ++E++L++   RTA++S+ N L++  VG I  
Sbjct: 919  EYVREWKPRFSVGQLVSGSILKLDPERNQIELSLRS--ERTAAKSDANALASYQVGQIAS 976

Query: 1340 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1399
              IK +E YG F+ I +T + GLCH S+  E         ++ G+ V+ +I++VD + ++
Sbjct: 977  CVIKTIERYGAFLRITDTLVSGLCHRSQFPEQGA-GWSKGFKIGQSVQARIVEVDTKSKK 1035

Query: 1400 ISLGMKSSYFKN-DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1458
            I   +     ++ D   +  S+  E+DE+ +E        +++    A     +   +G 
Sbjct: 1036 IGFTLLDVAQEDPDISAILPSAVGEADESDDE------DLVVDLGDPAPTAEHIGPNNGH 1089

Query: 1459 SLVLAQIESR---------------ASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID 1503
              V++ I S+               A  P LEV+ D+ +  + +  S+            
Sbjct: 1090 EAVISDISSKPLALIGGFEWSTTQSAPTPALEVDSDEAESTVADDASE------------ 1137

Query: 1504 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1563
                                  EE     D  R     ER +  SP+SS +WI+Y++ +L
Sbjct: 1138 ----------------------EETGSASDGDRNVTSLERELIGSPDSSILWIQYISLLL 1175

Query: 1564 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1623
               D+ +AR +A+RAL TIN RE+ E+ N+W A  ++EN+YG P  E +   F+ A+Q  
Sbjct: 1176 EARDITQAREVAQRALSTINYREDEERFNVWNAILSMENQYGTP--ETLETAFKEAVQAN 1233

Query: 1624 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVV 1682
            + K++HL L  +   + ++  A+EL  + +KKF  S KVW      L ++++    + +V
Sbjct: 1234 EAKRIHLRLAEILTASNKHAQAEELYQRTVKKFSQSSKVWTIFATYLHERRKSSDARELV 1293

Query: 1683 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1742
             R++ SLP+ KH+K  ++ A +EFK+G A+RGR+MFEGI+  YPKR DLW +Y+D E R 
Sbjct: 1294 ARSMKSLPQRKHVKTAAKFAQVEFKHGDAERGRTMFEGIIDSYPKRLDLWLVYIDMEARS 1353

Query: 1743 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794
             ++  +R LF+R ++  L  KK K + KK+L  EK  G++  +E VK++A E
Sbjct: 1354 QNMAAVRFLFDRLLAQKLSTKKAKSVLKKWLSLEKLHGDDASVETVKERARE 1405



 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 196/767 (25%), Positives = 319/767 (41%), Gaps = 94/767 (12%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL-----DNEIEA----NEDNL- 48
           KL  +V  V+  +L++ LP  L G   L   +  L   L     D+E E+    +ED+  
Sbjct: 125 KLLCLVVSVHALELIVSLPNELSGHIPLVNISSGLTAQLASGHPDDESESTDEQDEDDSP 184

Query: 49  -LPTIFHVGQ--LVSCIVLQLDD------------DKKEIGKRKIWLSLRLSLLYKGLSL 93
            L  ++  GQ  + S +  +  D            D+     R++ LSL    +   L+ 
Sbjct: 185 DLTQMYEPGQYLIASVVACRSSDVARNTLDPSRRGDEAYRTSRRLELSLDPKPINDDLAR 244

Query: 94  ETVQEGMVLTAYVKSIEDHGYILHFGL----PSFTGFLPRNNLAENSGIDVKPGLLLQGV 149
             + +G++L   VKS+ED+GY+L   L     SF  F       E +    K   L+ G 
Sbjct: 245 SDLTDGLLLPVSVKSVEDNGYVLDLRLKDEMTSFVKF-------EEAQTSRK---LIGGQ 294

Query: 150 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDL---------LVPGMMVSTRVQSILE 200
           V     T +++ L+S+  T +  +  D   I             L+PG  V+  V +++ 
Sbjct: 295 VI----TARLIKLASNGRTCTLAI--DATRIRAAALATAPTLHGLLPGNQVNAIVSAVIP 348

Query: 201 N-GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD-PT---SRAVGL 255
             G+ + FL +F GT+D  HL           +Y +  K+ AR+L+   PT   +R   L
Sbjct: 349 GRGLNVKFLGFFDGTIDHTHLV-------IGKEYKEGNKIKARLLWSSAPTLDAARTFAL 401

Query: 256 TLNPYLLHNRAPP--------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT 307
           +  P++L   APP          V +G   D  KV R +   GL            A+V 
Sbjct: 402 SALPHVL-KLAPPLLGDTLLKEAVPIGTFVDSVKVNRTESEHGLACTARLGANECAAFVH 460

Query: 308 ISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
           IS V++E +  L  K   Y  G+  R R++G   L+G     L+ S         SDV  
Sbjct: 461 ISRVSDEHLGTLSAKSGPYCPGTTHRGRVIGLALLDGALQISLQPSVLAQRFLRVSDVVV 520

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
           G  VK  +  + S    V   G V A+    H S+ ++  P K+FK+G  +  R+     
Sbjct: 521 GEAVKATIKRITSKAMFVSVDGNVDAVVWPLHYSDIKLKHPEKRFKIGDVVKGRIFAADS 580

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           +S +I VT KK+L+ S L +  S A+   +      ++KI +    V  + G +   P S
Sbjct: 581 ESSKIVVTLKKSLLASDLPVPQSLADVKPQQAYDAVLSKIMEKALLVDLFGGARAIIPIS 640

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR-VSEDDLVKLGSLVSG 541
           E G       +++Y  GQ ++ RIM    ++ RI  S   +    V+  + +K+G     
Sbjct: 641 EAGQGFVDNLAALYKEGQRLQVRIMHVDTSAGRITASLRERDLDGVAALEGLKVGQKTEA 700

Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLDNES 600
           V+  +  N  +V  IA   ++G +     A  L  AT  +K  I  G     L V+   +
Sbjct: 701 VIAALH-NDNIVLEIAPSKARGLLSYTAHARQLGVATDELKQRIAVGQLLKDLTVVSKNT 759

Query: 601 SN--LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET---GCFVRFLGRLTGFA 655
                +LS+  +  NS+    SD       +V   Y   II +   G  V+    L   A
Sbjct: 760 QKGIAILSSGSTSTNSSANGISDMLQFESVAVGETYAGKIIGSAPQGLHVQLSRALRALA 819

Query: 656 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
             +  +D   A L      G  V  NI+  +    R+ +SL+ S  +
Sbjct: 820 HWTDVLDDFDAALPAP---GTVVSCNIVGKDEAARRVDVSLRPSVMA 863


>gi|328850494|gb|EGF99658.1| hypothetical protein MELLADRAFT_22369 [Melampsora larici-populina
            98AG31]
          Length = 1489

 Score =  299 bits (765), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 214/628 (34%), Positives = 346/628 (55%), Gaps = 51/628 (8%)

Query: 1191 CKVLEISRTVRGTFHVELSLRSS-LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1249
            C V+++ R    T  V L+LRSS L+     ++S++    D P   +  I+DL     ++
Sbjct: 879  CAVVKVDRQ---TSKVYLTLRSSRLNRGVQKSASEVR---DRP---IVSIKDLKKGDKIR 929

Query: 1250 GYVKNVTSK-GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1308
            G+++ +  K G  + +   L AKV +S L D  +     +F +G++V+G +++    S+ 
Sbjct: 930  GFIQRICEKAGLLVRIGTNLSAKVKISELFDQDIPDWVGKFKVGQVVSGVIITPVKASRG 989

Query: 1309 VEVTLKTSD-SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
            ++++L+ +      S  +   L     G IV   I+++E YG+F+ I++  + GLCHVS+
Sbjct: 990  IQLSLRENPFGPKVSDPKKLVLEKFQEGQIVGTTIRKIEKYGMFLAIDDAGISGLCHVSQ 1049

Query: 1368 LSED-HVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1425
            LS+D  VD N    Y+ G +++  ++KVD + RRISL +K S          +  E+E D
Sbjct: 1050 LSDDDEVDRNWAKKYKEGMRLQAALVKVDLKARRISLSIKPS----------IVGEQELD 1099

Query: 1426 EAIEEVGSYN---------RSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV 1476
               +E  S +          S++ ++ SV   DM + S+     +  QI++     P   
Sbjct: 1100 SGDDEDESDDEDVEEEELDHSNVEKDDSV---DMVVTSKSVNQPLAVQIQAPCLALPGGF 1156

Query: 1477 NLDD--EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA 1534
            N +   +    D   S ++G +DE    D   + H   +EKE  E E R +    LE  +
Sbjct: 1157 NWNSTVQTRAADEQDSDSEGSSDED---DHATSNHVTGQEKEVSEPEHRNSSH--LENGS 1211

Query: 1535 PRTP-DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1593
              T   + ER +  SPNSS +WI+ M+  +  AD+ +AR   +RAL  I+ REE+EKLN+
Sbjct: 1212 VTTSIADLERQLLGSPNSSLLWIQLMSCHIQQADLNEARETVKRALNGIHYREESEKLNV 1271

Query: 1594 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1653
            W+A+ NLEN YG   EE ++KVF  A +  D K V L +  +Y  + + + A+EL  K++
Sbjct: 1272 WIAWLNLENAYGT--EEQMMKVFGEASKANDTKTVWLKMAEIYTESGKIEKANELYTKLV 1329

Query: 1654 KKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            KKF  S K W    +  L  +QE     ++ R+L SLP+HKH+K +++ A  EFK+G  +
Sbjct: 1330 KKFSESSKAWSLYARFCLTNKQEAQTLELLARSLRSLPKHKHLKTMNKFAQYEFKHGEIE 1389

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQE-IRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771
            RGR++FEG+++ YPKRTDLW++Y+D E  RL   D +R LF R +SL L PKK KF+FKK
Sbjct: 1390 RGRTLFEGLIASYPKRTDLWNVYIDLERTRL---DRVRALFARMLSLKLNPKKSKFVFKK 1446

Query: 1772 YLEYEKSVGEEERIEYVKQKAMEYVEST 1799
            +L  EK  G+E     V ++A  YV+++
Sbjct: 1447 WLGIEKEFGDEASQNKVLEQARAYVQAS 1474



 Score =  126 bits (317), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 121/531 (22%), Positives = 233/531 (43%), Gaps = 68/531 (12%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGKR---------KIWLSLRLSLLYKGLSLETVQEG 99
           L  IF VGQ + C+V+        I  R         ++ L++  + L   L  + +   
Sbjct: 175 LNEIFKVGQWIRCMVIHTTSGTPNIAHRASPLVRAAHRVKLTIDPARLNGDLEKKDLSAN 234

Query: 100 MVLTAYVKSIEDHGYILHFGLP----------------SFTGF-----LPRNNLAENSGI 138
           M L   VKSIED+GY++   +P                +F  F     +P+ +L      
Sbjct: 235 MTLDGAVKSIEDNGYVVDLCVPVNSSQQASSSAPQTVTTFVLFSDAIKIPQTHLHNRELW 294

Query: 139 DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 198
            +  G +++  +  + ++     +  DP  ++  +      I+ID ++P  +V+  + ++
Sbjct: 295 QI--GQIVRCRIDKVSKSGSTCTVFVDPTGIASSLLT--TAINIDCVLPLHLVTCLITAV 350

Query: 199 L-ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS---RAVG 254
           + E G+ + FL Y+ GT+D+++L      T  ++ +   +K+ AR+L+   +S   +   
Sbjct: 351 VPEEGLNVEFLGYYKGTIDLYNLGVGIGGTKVEDRFKAGQKIRARVLWHTRSSSPQKTFS 410

Query: 255 LTLN-----------PYLLHNRAP---PS-------HVKVGDIYDQSKVVRVDRGLGLLL 293
           L+L            P LL N  P   PS          +G  +  ++V  V +  GL +
Sbjct: 411 LSLLDHCVNMVTPGLPLLLQNDTPNGLPSESIEHLMRFNIGYTFQSTRVCGVVKDWGLYV 470

Query: 294 DIP--STPVSTPAYVTISDVAEEEVRKL----EKKYKEGSCVRVRILGFRHLEGLATGIL 347
           +    S       ++ IS + +  +  +       Y+ G+  + +++G   ++G+     
Sbjct: 471 EYSDNSNQQRVIGFIHISAIRDTHLSDILVEGSGPYRLGTTHKAKVVGISPIDGMLQLSS 530

Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
           + S  E       DV  G +V  +V  + S    +   GG+  +    H S+ ++  P K
Sbjct: 531 QPSVVEQPYIRPQDVAVGEIVTAEVTRLCSSALFLSIFGGLDCVVWPDHYSDVKLQHPEK 590

Query: 408 KFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 465
           KF+ G +L  RVL V     RI +T +K+L+    + ++SYA A   ++T   IT+++  
Sbjct: 591 KFQAGMKLTARVLYVNPNKHRIALTLRKSLLDPTFSSITSYATAQPGMVTDAVITRVKAR 650

Query: 466 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
              + F+   +G  P  E   +   E  S +  G+VVK +I+S  P +R+I
Sbjct: 651 HLEIEFFGQTRGVIPIRE-AAEKFSESLSDFRAGRVVKVQILSVDPLARKI 700



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 3/161 (1%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            +D++   IV   V  + S   F+ +   LD  V   + SD  ++ PEK+F  G  +  RV
Sbjct: 543  QDVAVGEIVTAEVTRLCSSALFLSIFGGLDCVVWPDHYSDVKLQHPEKKFQAGMKLTARV 602

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
            L V P   R+ +TL+ S     + S I + +    G +    I RV++  L I       
Sbjct: 603  LYVNPNKHRIALTLRKS-LLDPTFSSITSYATAQPGMVTDAVITRVKARHLEIEFFGQTR 661

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
             G+  + E +E   +++   +RAG  VKV+IL VD   R+I
Sbjct: 662  -GVIPIREAAEKFSESLSD-FRAGRVVKVQILSVDPLARKI 700


>gi|320589974|gb|EFX02430.1| rRNA biogenesis protein [Grosmannia clavigera kw1407]
          Length = 1753

 Score =  298 bits (763), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 327/1381 (23%), Positives = 629/1381 (45%), Gaps = 175/1381 (12%)

Query: 474  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-- 528
            GV GF   S +    +D   E S  + VG   + R++          +SF  K    S  
Sbjct: 474  GVPGFVHISRVKDGKVDALYESSGPFKVGSTHRGRVIGYNAVDGIFLVSFEQKVLEQSFI 533

Query: 529  --EDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 581
              ED  V +G +V+G +   ++  N +  ++  IA G + G +P  H +D  L+H    +
Sbjct: 534  RIED--VPVGDVVTGHIKKLLLNQNGISGLIVEIADGIA-GLVPEIHFSDIKLQHP---E 587

Query: 582  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 640
               + G +   ++L +D  +    L+ K +L+NS          +       G V N++ 
Sbjct: 588  KKFREGMKVTARVLSIDPANHQFRLTLKKTLVNSDIPPVKSFDDLSVGQQCLGTVVNVVP 647

Query: 641  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
             G +V+F G L GF P ++  +    D  + +  GQ+V   +L  + +  ++ +S K   
Sbjct: 648  IGAYVQFYGDLRGFLPVAEMSEAFIRDPKEHFRQGQAVNVRVLRFDPDLNKLVVSCKDPS 707

Query: 701  CSSTDASFMQEHFLLEEKIAMLQSSKHNGS-ELKWVEGFIIGSVIEGKVHESNDFGVVVS 759
                D     +   +   ++    +KH+ S E++ VE  +  ++  G + + +       
Sbjct: 708  AFGVDKRQALQDLQICSIVSAKAIAKHDDSVEVEIVENGLKATLPIGHLSDRSP------ 761

Query: 760  FEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSN 818
                         +Q A   +  G V+ +  +LD  +  R++ +S K   I   +E    
Sbjct: 762  -----------AKNQAALKRIHIGQVLPELLVLDKHEGRRVITVSQKPSLIAASKEG--- 807

Query: 819  RQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFP 877
            +     +  R  S   G  + +      V+    +V  LP+        +  D+   K  
Sbjct: 808  KLLVNMEDARTGSLVTGFVRNITPTAAFVQFAANIVALLPKPLMPRTAQAEPDFGLHK-- 865

Query: 878  QKQFL--------NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD- 928
              Q L        NG+     V +LPS   A       KA + + T  +      +++D 
Sbjct: 866  -SQTLALKIISVENGR----LVASLPSDVPAEEKDTGEKAGAGSRTLLNPVDSSLATFDD 920

Query: 929  --VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVT 984
              +G + +A IT +K  +L ++      GR+ ++E+ D   +V   ++   NF+ GQ + 
Sbjct: 921  LHLGQITKARITSVKNTQLNVRLADNVSGRVDMSEIFDSWDDVPDAKSPLQNFEEGQILD 980

Query: 985  ARIIAKSNK--------PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1036
             RI+   +            K+  + ELSIKPS L   +    L  ++  V +G     +
Sbjct: 981  VRILGVHDAKRRVYLPITQQKRRSVLELSIKPSSLQGGKTPDILSIDK--VQVGSSWVAF 1038

Query: 1037 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1096
            V         L+++ H++ +L+ ++++ + S +++ +  F +G A+   V+ ++ EK  +
Sbjct: 1039 VNNHGANCLWLSLTPHVRGRLYGMEASDDMSLVKDLEANFPVGMAIHVRVVQVDVEKGRI 1098

Query: 1097 RLVLR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1155
             L  R P  +G          D   + I +  ++  +++K+  G   ++VQ+   + G +
Sbjct: 1099 DLSARSPGGEG----------DLAWSSIEKNLVLPAKVTKVSDG--QVLVQLSKTVSGPL 1146

Query: 1156 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1215
            H  ++ +         +D+      + Y +   ++  V+ +  + +    + LS R S  
Sbjct: 1147 HLVDIAD--------DFDQAT---TTAYFKHDIIRVSVVSVDASNK---RMRLSTRPSRV 1192

Query: 1216 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1275
              SS    D         + +    D+ P  +++G+V+ ++ KG F+ L   + A V ++
Sbjct: 1193 LNSSFPVED---------REILDFSDVKPGSVIRGFVRGISDKGVFVNLGGDVVAFVRVT 1243

Query: 1276 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1335
            +LSD +++  +  F I +LV GRV +V+   K+++++LK S +   + + +  L +LH G
Sbjct: 1244 DLSDSFLKDWKAHFRIDQLVKGRVTAVKAEVKQIQMSLKAS-AIDENYAPLLTLDDLHEG 1302

Query: 1336 DIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1394
             IV G++++V  +G FI ++N+ N+ GLCH +E+++  V                    D
Sbjct: 1303 QIVSGRVRKVADFGAFIVVDNSANVSGLCHRTEMADKSVR-------------------D 1343

Query: 1395 KEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1454
              K R++LG+K  YF++++D+         ++A+   G  N +  + ++     D   ++
Sbjct: 1344 ATKLRVNLGLKPKYFEDESDS--------DEDAMSVDGGDNVADDVSDNGKDGADA-AKT 1394

Query: 1455 EDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE 1514
             +GG L     +   +   L+    D Q D+D          D    + +++ R  K   
Sbjct: 1395 ANGGGLSGGAFDWTGNA--LDQENGDSQSDLD--------EEDGGALVAKRSKRSKKAAA 1444

Query: 1515 KEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1574
              + +   R A+   L+   P+T  ++ERL+    + S +WI+YMAF + ++++ KAR I
Sbjct: 1445 AADID---RTAQ---LDVRGPQTASDYERLLLGQADMSALWIEYMAFQVQVSELAKAREI 1498

Query: 1575 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1634
            AERA++TIN+R+E E+LN+W+AYFNLE EYG+  EE    VF+RA QY D ++V      
Sbjct: 1499 AERAIKTINVRQETERLNVWIAYFNLEVEYGS--EETADAVFKRACQYNDDREVFARAAS 1556

Query: 1635 LYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSL-P 1690
            +Y ++ +   ADEL   M KKF   S ++W+     L     +  +A  ++ RA+ +L  
Sbjct: 1557 IYIQSGKLNKADELFQTMTKKFGAQSPQIWINYAHFLHHSMHDVDRARTLLTRAVQTLGT 1616

Query: 1691 RHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL------ 1742
                I  +S+ A LEF++  G  + GR+ FE +L ++PK+ D+W   LD E  +      
Sbjct: 1617 SAATITLMSRFAALEFRSPVGNPEHGRTTFETLLDKWPKKHDIWDQLLDLETSVYTAEKA 1676

Query: 1743 ------GDVDLIRGLFERAI-SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
                   D  ++R +FER   +  L  ++ K  F+++ ++E+  G+ +    V  +A E+
Sbjct: 1677 KGAEGKADPAVVRDVFERGTKAKGLKARRAKSWFQRWAKWEEQNGDAKSRARVTTRAKEW 1736

Query: 1796 V 1796
             
Sbjct: 1737 A 1737



 Score =  183 bits (465), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 186/743 (25%), Positives = 333/743 (44%), Gaps = 59/743 (7%)

Query: 5   GVVAEVNEKDLVICLPGGLRG---LARAADALDPIL--------DNEIEANEDNLLPTIF 53
           G ++E+   ++ + LP  L G   +   + AL   +        D+E  A+E+  + T+F
Sbjct: 151 GQISEITPLEIAVSLPNNLVGHLSVTSISQALTERIEAEAENANDDEDAAHEEVDVQTLF 210

Query: 54  HVGQLVSCIVLQL-DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 112
            +GQ +   V+   DDD ++  KR+I LS R  L   GL+ + V     + A V S+ED 
Sbjct: 211 GLGQYIRVSVVSTEDDDAEKKKKRRIELSTRPELANAGLTDQDVVRNSTVMASVISVEDR 270

Query: 113 GYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTV 169
           G+++  G+      GFL +  L  +   + ++PG ++  +V       KV  LS++   +
Sbjct: 271 GFVMDLGIQDSDLRGFLAKKELDPSIPEERLQPGAVILCLVTGKATNGKVAQLSANKTQL 330

Query: 170 SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 229
                      +I+  +PG  V   V  +   G+    L +   T D+ H        + 
Sbjct: 331 GSIKNVASDATTINTFLPGTAVDVLVSEVTARGLAGKVLGHLDATADMTHSGAGGSIGDL 390

Query: 230 KNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL------------HNRAPPSHVKVGD 275
              Y    K+ AR++   PT+    V ++L P++L            H++AP   + +  
Sbjct: 391 DEKYKVASKIKARVICTFPTADNPKVAISLLPHILSLQQQTAGGKNVHDKAPTQALPLST 450

Query: 276 IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVR 332
           I +   V + +  +GL +D+    V  P +V IS V + +V  L +    +K GS  R R
Sbjct: 451 IVESCVVRKAELNVGLWVDVGVEGV--PGFVHISRVKDGKVDALYESSGPFKVGSTHRGR 508

Query: 333 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGAIVQFPGG 387
           ++G+  ++G+     +    E       DV  G VV G +  +        G IV+   G
Sbjct: 509 VIGYNAVDGIFLVSFEQKVLEQSFIRIEDVPVGDVVTGHIKKLLLNQNGISGLIVEIADG 568

Query: 388 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSS 445
           +  L P  H S+ ++  P KKF+ G ++  RVL +   + +  +T KKTLV S +  + S
Sbjct: 569 IAGLVPEIHFSDIKLQHPEKKFREGMKVTARVLSIDPANHQFRLTLKKTLVNSDIPPVKS 628

Query: 446 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 505
           + + +      G +  +   G +V+FY  ++GF P +E+      +P   +  GQ V  R
Sbjct: 629 FDDLSVGQQCLGTVVNVVPIGAYVQFYGDLRGFLPVAEMSEAFIRDPKEHFRQGQAVNVR 688

Query: 506 IMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 559
           ++   P   ++ +S      F +   +  +D  +++ S+VS        ++V V ++  G
Sbjct: 689 VLRFDPDLNKLVVSCKDPSAFGVDKRQALQD--LQICSIVSAKAIAKHDDSVEVEIVENG 746

Query: 560 YSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSA 615
             K T+P  HL+D    ++   +K  I  G    +LLVLD       + +S K SLI ++
Sbjct: 747 L-KATLPIGHLSDRSPAKNQAALKR-IHIGQVLPELLVLDKHEGRRVITVSQKPSLIAAS 804

Query: 616 QQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 673
           ++  L  +       S+V G+V NI  T  FV+F   +    P+       +A+     +
Sbjct: 805 KEGKLLVNMEDARTGSLVTGFVRNITPTAAFVQFAANIVALLPKPLMPRTAQAEPDFGLH 864

Query: 674 VGQSVRSNILDVNSETGRITLSL 696
             Q++   I+ V  E GR+  SL
Sbjct: 865 KSQTLALKIISV--ENGRLVASL 885



 Score = 44.7 bits (104), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 356  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
            +   SDVKPG V++G V  +   G  V   G V A   +  +S+  +      F++   +
Sbjct: 1204 ILDFSDVKPGSVIRGFVRGISDKGVFVNLGGDVVAFVRVTDLSDSFLKDWKAHFRIDQLV 1263

Query: 416  VFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 473
              RV  VK+  K+I ++ K + +    A L +  +  +  I  G + K+   G F+   N
Sbjct: 1264 KGRVTAVKAEVKQIQMSLKASAIDENYAPLLTLDDLHEGQIVSGRVRKVADFGAFIVVDN 1323

Query: 474  --GVQGFAPRSELG 485
               V G   R+E+ 
Sbjct: 1324 SANVSGLCHRTEMA 1337


>gi|451851669|gb|EMD64967.1| hypothetical protein COCSADRAFT_189966 [Cochliobolus sativus ND90Pr]
          Length = 1795

 Score =  294 bits (752), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 240/907 (26%), Positives = 454/907 (50%), Gaps = 110/907 (12%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 987
            G+L+   +  +K  +L ++      GRI ++E+ ++  ++ +     ++FK+  T+ AR+
Sbjct: 938  GTLMTVRVRSVKDTQLNVELAANVPGRISVSELFENWDSIPDKKRPTAHFKMNDTIQARV 997

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV-SIGQRVTG-----YVYK 1039
            + + +  + +  FL   S   +  T  E+ +K   +  E DV S+ + +TG     ++  
Sbjct: 998  LGRHDPRNFR--FLPITSRSSNKTTTYEMTAKTEEIKSEADVLSLDKVITGSSYIAFINN 1055

Query: 1040 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1099
            + +    + IS +++ ++   D   +  +L + ++ F +G A+   V +++     L L 
Sbjct: 1056 IADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGSALKVRVKTVDAANGKLDLT 1115

Query: 1100 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1159
                   ++ K++ + +      +  G ++  R++K+      +VVQI   +   +   +
Sbjct: 1116 A---ASTVTGKSLSLQD------LKVGHVLPARVTKLHDA--SIVVQINESIAAPIFMEQ 1164

Query: 1160 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1219
            L +         YD+ Q           FV   VL +         +++ + +   G+S+
Sbjct: 1165 LAD--------DYDKAQ--------PKNFVAGDVLRVCV-------IDIDIPNKKLGLSA 1201

Query: 1220 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1279
              S  LS+ +      +     L  N +V+G+VK++ + G ++ L   ++A V +S+LSD
Sbjct: 1202 RPSRVLSSSLPVKDPEITDRTQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSD 1261

Query: 1280 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1339
             Y++  +  F + +LV G+V+S +   +  +++LKTS  +T    E    + L +G IV 
Sbjct: 1262 EYIKDWKSVFHVDQLVTGKVISNKEDQRNPQLSLKTSIIKT-DYVEPLEFATLKIGQIVS 1320

Query: 1340 GQIKRVESYGLFITIENTNLV-GLCHVSELSEDHVDN--IETIYRAGEKVKVKILKVDKE 1396
             +++ VE YG+F+ ++N+N V GLCH+S++++  VD   ++ +Y+  + VK K++KVD +
Sbjct: 1321 AKVRHVEDYGVFLIVDNSNNVSGLCHISQIADAVVDKEKLKDMYKKDDVVKAKVIKVDPK 1380

Query: 1397 KRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESED 1456
             R++S  +K S  K +            DE +E+V    +S          +D D E   
Sbjct: 1381 SRKVSFTLKYSQVKGEGKG--------EDEEMEDVSDVEQS----------EDDDSE--- 1419

Query: 1457 GGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK---------------- 1500
            GG  +   ++ R SV   E + D E  D D+  S+++   DE+K                
Sbjct: 1420 GGVKLDNDVDMR-SVKSAESDDDIELADADS--SEDESENDESKATAKSLSTSGFDWTGA 1476

Query: 1501 TIDEKNNRHAKKKEKEEREQEIRAA-------EERLLEKDA--PRTPDEFERLVRSSPNS 1551
            T+D    +   + E E+   + +         E+R  + DA  P++  ++ERL+   PNS
Sbjct: 1477 TLDFDQQKGGAESESEDDAPKKKKKSKKATIKEDRTGDLDAYGPQSVADYERLLLGQPNS 1536

Query: 1552 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1611
            + +W++YM F   + ++EKAR IA RAL TIN REE EKL++W A  +LEN++ +  ++A
Sbjct: 1537 AELWVRYMVFQRELNEIEKARQIARRALVTINPREEKEKLDVWTALLHLENDFSS--DDA 1594

Query: 1612 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQR 1669
            +  VF+ A Q  D +++H  ++ +Y  + +   ADEL   M+K   F    K WL     
Sbjct: 1595 INAVFKEACQNNDDREIHERMIKIYISSGKIDKADELYQSMMKNKSFTADPKFWLSYAAF 1654

Query: 1670 LLKQQQEG----VQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILS 1723
            L+   Q       +A++QRA  S+   +H     + A LEFK  NG  +RGR++FEG++ 
Sbjct: 1655 LMDVIQPPSPARARALLQRATQSVAAPQHRYLTQKFAALEFKSPNGDTERGRTIFEGLVD 1714

Query: 1724 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1783
             + K+ D+W +YL  E   G+ D +R LFER   +     +++ +FKK+ E+E SV  ++
Sbjct: 1715 TFAKKGDVWDMYLMLEQSHGESDKVRDLFERMTKVG-KSSRIRGVFKKWAEWENSVRNKK 1773

Query: 1784 RIEYVKQ 1790
             +E VK+
Sbjct: 1774 GVEKVKK 1780



 Score =  187 bits (474), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 203/750 (27%), Positives = 338/750 (45%), Gaps = 66/750 (8%)

Query: 5   GVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---------DNEIEANEDNL---- 48
           G + +++ +DLV+ LP  L G   L   +D L+  L         D E  +++D+     
Sbjct: 159 GQITDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKEDESDKEDGSDKDDFEDAD 218

Query: 49  LPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
           L  +F VGQ L +CI     +  K   ++++ LS+   L+  GL+   +    ++ A V 
Sbjct: 219 LRDLFSVGQYLRACITATSGEGAK--ARKRLELSIEPKLVNTGLTKRKIPVNGMIQASVV 276

Query: 108 SIEDHGYILHFGLPSFT--GFLPRNNLAENS-GIDVKPGLLLQGVVRSIDRTRKVVYLSS 164
           S EDHG ++  GL   T  GFLP+  L  N     V+ G +   ++  ++   ++V LS+
Sbjct: 277 SNEDHGLVMDLGLNDATLKGFLPKGELGPNLLHSKVQEGAVFMCLITGLNSDGRIVKLSA 336

Query: 165 DPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           D  T +  +TK     +  +ID+ +PG  V   V     N +    L     T D +H  
Sbjct: 337 D-HTKAGNLTKGNTLTEAPTIDVFLPGTAVDLLVTENTPNTITGKILGLIDATADAYHSG 395

Query: 222 NTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL----------HNRAPP- 268
            T   T+    +    KV AR+LF  P S  R V ++L  ++L            R PP 
Sbjct: 396 ATEKATDVSQKHKIGSKVKARVLFTCPGSDPRKVSVSLLDHVLSLSTRMSGKPKERKPPI 455

Query: 269 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKE 325
             + +  I + +KVV+V    G   D+    V    +  IS +++++V  L ++   +K 
Sbjct: 456 DLLPISTIVESAKVVKVAPSQGAFFDLGIKDVV--GFAHISRLSDDKVDILSEEAGAFKL 513

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA--- 380
            S  + RI+G+  L+GL    L+    +       D+K G VVKGKV  +  D  GA   
Sbjct: 514 DSKHKARIVGYNALDGLFQLSLEKKVIDQPFLRIEDIKAGEVVKGKVHKLFADKTGATAV 573

Query: 381 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS 438
           +V    G+  L P  H+++  +  P +KF+ G  +  RVL  +  R  I +T KK+LV S
Sbjct: 574 LVHLSDGITGLVPEMHLADVRLQHPERKFREGLPVTVRVLYTEPARHQIHLTLKKSLVNS 633

Query: 439 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
           ++   ++Y   ++     G +  + ++G  V+FYN V+ + P +E+      + +  +HV
Sbjct: 634 EVKPWTNYKMISEGATGPGILVNVRRNGATVQFYNRVRAWLPVAEMSEAFIHDATRHFHV 693

Query: 499 GQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVV 553
           GQVV  R++ S+ A  R  L     P+ V  +     + +  G +V G V V   +    
Sbjct: 694 GQVVNVRVL-SVDAKERQLLVSCKDPSAVDTNKEAAFNALNPGGIVKGTV-VEKSDESAT 751

Query: 554 YVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVL--DNESSNLLLSAKY 609
             I  G  KG +   HL D  E   +  MK  I+ G   + L+VL    +S    +S K 
Sbjct: 752 LDIGNGV-KGILRLGHLTDGSEKKDISTMKK-IRVGGTLEDLVVLAKHGKSKTATVSNKP 809

Query: 610 SLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 667
           SL   AQ  +L      +     VHG+V  I+    FV     ++G   +S+  +   A 
Sbjct: 810 SLRKDAQASKLAISIEDLQAGETVHGFVRGILSDKVFVELGNGISGALFKSQLPEDMAAA 869

Query: 668 LSKTYYVGQSVRSNILDVNSETGRITLSLK 697
                   QS+ + +  V+   G   LS+K
Sbjct: 870 PDFGLRKDQSITARVTHVDVGKGLFWLSMK 899



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 102/447 (22%), Positives = 179/447 (40%), Gaps = 84/447 (18%)

Query: 404  KPGKKFKVGAELVFRVLG-------------VKSKRITVTHKKTL----VKSKLAILSSY 446
            +P   FK+   +  RVLG              +S   T T++ T     +KS+  +LS  
Sbjct: 982  RPTAHFKMNDTIQARVLGRHDPRNFRFLPITSRSSNKTTTYEMTAKTEEIKSEADVLS-- 1039

Query: 447  AEATDRLITH----GWITKIEKHGCFVRFYNGVQGFAPRSEL--GLDPGCEPSSMYHVGQ 500
                D++IT      +I  I     +V     ++G     +L   L+   +    + VG 
Sbjct: 1040 ---LDKVITGSSYIAFINNIADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGS 1096

Query: 501  VVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYV--- 555
             +K R+ +   A+ +++L+     T   +S  DL K+G ++   V  +   ++VV +   
Sbjct: 1097 ALKVRVKTVDAANGKLDLTAASTVTGKSLSLQDL-KVGHVLPARVTKLHDASIVVQINES 1155

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLIN 613
            IA       I  E LAD  + A     V     +  ++ V+D +  N  L LSA+ S + 
Sbjct: 1156 IA-----APIFMEQLADDYDKAQPKNFV---AGDVLRVCVIDIDIPNKKLGLSARPSRVL 1207

Query: 614  SAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 667
            S+  LP      +D + +  N VV G+V +I   G +VR    +  +   S   D    D
Sbjct: 1208 SSS-LPVKDPEITDRTQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSDEYIKD 1266

Query: 668  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 727
                ++V Q V   ++    +     LSLK         S ++  ++   + A L+    
Sbjct: 1267 WKSVFHVDQLVTGKVISNKEDQRNPQLSLK--------TSIIKTDYVEPLEFATLK---- 1314

Query: 728  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------ 781
                        IG ++  KV    D+GV +  +  ++V G     Q+A A V+      
Sbjct: 1315 ------------IGQIVSAKVRHVEDYGVFLIVDNSNNVSGLCHISQIADAVVDKEKLKD 1362

Query: 782  ---SGSVIQAAILDVAKAERLVDLSLK 805
                  V++A ++ V    R V  +LK
Sbjct: 1363 MYKKDDVVKAKVIKVDPKSRKVSFTLK 1389



 Score = 47.8 bits (112), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 13/176 (7%)

Query: 1238 KIEDLSPNMIVQG-----YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            +IED+    +V+G     +     +    + LS  +   V   +L+D  ++ PE++F  G
Sbjct: 546  RIEDIKAGEVVKGKVHKLFADKTGATAVLVHLSDGITGLVPEMHLADVRLQHPERKFREG 605

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYG 1349
              V  RVL  EP   ++ +TLK    ++   SE+   +N  +   G    G +  V   G
Sbjct: 606  LPVTVRVLYTEPARHQIHLTLK----KSLVNSEVKPWTNYKMISEGATGPGILVNVRRNG 661

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              +   N  +     V+E+SE  + +    +  G+ V V++L VD ++R++ +  K
Sbjct: 662  ATVQFYN-RVRAWLPVAEMSEAFIHDATRHFHVGQVVNVRVLSVDAKERQLLVSCK 716



 Score = 47.0 bits (110), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 24/186 (12%)

Query: 533 VKLGSLVSGVV-----DVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 586
           +K G +V G V     D     AV+V+ ++ G + G +P  HLAD  L+H         P
Sbjct: 550 IKAGEVVKGKVHKLFADKTGATAVLVH-LSDGIT-GLVPEMHLADVRLQH---------P 598

Query: 587 GYEFDQLL-----VLDNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 639
             +F + L     VL  E +   + L+ K SL+NS  +  ++   I   +   G + N+ 
Sbjct: 599 ERKFREGLPVTVRVLYTEPARHQIHLTLKKSLVNSEVKPWTNYKMISEGATGPGILVNVR 658

Query: 640 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
             G  V+F  R+  + P ++  +    D ++ ++VGQ V   +L V+++  ++ +S K  
Sbjct: 659 RNGATVQFYNRVRAWLPVAEMSEAFIHDATRHFHVGQVVNVRVLSVDAKERQLLVSCKDP 718

Query: 700 CCSSTD 705
               T+
Sbjct: 719 SAVDTN 724



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 172/846 (20%), Positives = 315/846 (37%), Gaps = 160/846 (18%)

Query: 625  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP-------------------RSKAVDG-- 663
            + P ++V G + +I      +     L G+ P                    S   DG  
Sbjct: 151  LSPGTIVLGQITDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKEDESDKEDGSD 210

Query: 664  ----QRADLSKTYYVGQSVRSNILDVNSETG----RITLSLKQSCCSSTDASFMQEHFLL 715
                + ADL   + VGQ +R+ I   + E      R+ LS++    ++          L 
Sbjct: 211  KDDFEDADLRDLFSVGQYLRACITATSGEGAKARKRLELSIEPKLVNTG---------LT 261

Query: 716  EEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQ 774
            + KI               V G I  SV+  + H     G+V+      + + GF+   +
Sbjct: 262  KRKIP--------------VNGMIQASVVSNEDH-----GLVMDLGLNDATLKGFLPKGE 302

Query: 775  LAG----ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREA 830
            L      + V+ G+V    I  +    R+V LS          + N+  +A         
Sbjct: 303  LGPNLLHSKVQEGAVFMCLITGLNSDGRIVKLSADHTKAGNLTKGNTLTEAPT------- 355

Query: 831  SKDLGVHQTVNAIVEIVKENY----------LVLSLPEYNHSIGYASVSDYNTQKFPQKQ 880
               + V     A+  +V EN           L+ +  +  HS      +D +     QK 
Sbjct: 356  ---IDVFLPGTAVDLLVTENTPNTITGKILGLIDATADAYHSGATEKATDVS-----QKH 407

Query: 881  FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-KKSSYD---VGSLVQ-A 935
             +  +     +   P S      + LL  +    T  S + K +K   D   + ++V+ A
Sbjct: 408  KIGSKVKARVLFTCPGSDPRKVSVSLLDHVLSLSTRMSGKPKERKPPIDLLPISTIVESA 467

Query: 936  EITEIKP-----LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 990
            ++ ++ P      +L +K  +GF    HI+ ++DDK +++      FK+     ARI+  
Sbjct: 468  KVVKVAPSQGAFFDLGIKDVVGF---AHISRLSDDKVDILSEEAGAFKLDSKHKARIVG- 523

Query: 991  SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV-DNEWALLTI 1049
             N  D     L++LS++  ++       +      D+  G+ V G V+K+  ++     +
Sbjct: 524  YNALDG----LFQLSLEKKVI------DQPFLRIEDIKAGEVVKGKVHKLFADKTGATAV 573

Query: 1050 SRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1107
              HL   +   + +       LQ  +R+F  G  VT  VL     +  + L L+  +  +
Sbjct: 574  LVHLSDGITGLVPEMHLADVRLQHPERKFREGLPVTVRVLYTEPARHQIHLTLK--KSLV 631

Query: 1108 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGV--GGLVVQIGPHLYGRVHFTELKNICV 1165
            + +    +N  M   I EG    G    IL  V   G  VQ    +   +   E+    +
Sbjct: 632  NSEVKPWTNYKM---ISEGATGPG----ILVNVRRNGATVQFYNRVRAWLPVAEMSEAFI 684

Query: 1166 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1225
                        D    +  GQ V  +VL +    R               +S  + S +
Sbjct: 685  -----------HDATRHFHVGQVVNVRVLSVDAKERQLL------------VSCKDPSAV 721

Query: 1226 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-- 1283
             T+ +           L+P  IV+G V   + +   + +   +   + L +L+DG  +  
Sbjct: 722  DTNKEAA------FNALNPGGIVKGTVVEKSDESATLDIGNGVKGILRLGHLTDGSEKKD 775

Query: 1284 -SPEKEFPIGKLVAGR-VLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIG 1340
             S  K+  +G  +    VL+    SK   V+ K S  + A  S++  ++ +L  G+ V G
Sbjct: 776  ISTMKKIRVGGTLEDLVVLAKHGKSKTATVSNKPSLRKDAQASKLAISIEDLQAGETVHG 835

Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
             ++ + S  +F+ + N  + G    S+L ED     +   R  + +  ++  VD  K   
Sbjct: 836  FVRGILSDKVFVELGN-GISGALFKSQLPEDMAAAPDFGLRKDQSITARVTHVDVGKGLF 894

Query: 1401 SLGMKS 1406
             L MKS
Sbjct: 895  WLSMKS 900


>gi|169614287|ref|XP_001800560.1| hypothetical protein SNOG_10281 [Phaeosphaeria nodorum SN15]
 gi|111061496|gb|EAT82616.1| hypothetical protein SNOG_10281 [Phaeosphaeria nodorum SN15]
          Length = 1794

 Score =  293 bits (751), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 235/907 (25%), Positives = 450/907 (49%), Gaps = 93/907 (10%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 987
            G+ ++  I  IK  ++ ++      GRI ++E+ D   ++ +     ++F++ QT+ A++
Sbjct: 935  GTELKVRIRSIKSTQINVELAENVQGRISVSELFDSWDDIPDKKRPTAHFQMNQTIKAKV 994

Query: 988  IAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1037
            + + +  + +          K+  ++L+ K   L  SE G  L  ++  V+ G     +V
Sbjct: 995  LGRHDARNHRFLPITHRSSNKTPTFDLTAKNEKLK-SE-GDVLSLDK--VTEGSSYVAFV 1050

Query: 1038 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1097
              + + +  + +S +++ ++  LD   +  +L   +  F +G A+   V +++     L 
Sbjct: 1051 NNIADRYVWVNLSANVRGRVDFLDLTDDLEQLSAVEENFPVGSALKVRVKAVDIAAGRLD 1110

Query: 1098 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1157
            L        ++ KT+ +++      +  G ++  R++KI      +VVQ+  ++   +  
Sbjct: 1111 LTA---ASTVTGKTLSLAD------LKVGYVLPARVTKIHDA--SIVVQVNENIAAPIFL 1159

Query: 1158 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1217
              L +         YD+ +    S Y +G  ++  V+E+             + +   G+
Sbjct: 1160 ERLAD--------DYDKAK---PSEYKQGDVLRVCVIEVD------------IPNKKLGL 1196

Query: 1218 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1277
            S+  S  LS+ +      +E    L  + +V+G++K +   G ++ L   ++  V +SNL
Sbjct: 1197 SARPSKVLSSTLPVKDPIIEDKAQLKVHQVVRGFIKKIADNGVYVRLGPHVETYVRVSNL 1256

Query: 1278 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1337
            SD Y++  +  F + +LV G+++S +   +  ++TLKTS +   +  EI    ++  G I
Sbjct: 1257 SDSYIKDWKSAFHVDQLVTGKIISNKEDQRNAQMTLKTS-TIQGNYVEILEFGDMKAGQI 1315

Query: 1338 VIGQIKRVESYGLFITIENTNLV-GLCHVSELSEDHV--DNIETIYRAGEKVKVKILKVD 1394
            V  ++++V  +G+F+ ++N+N V GLCHVS+L++  V  D I+ +Y+ G+ VK K++ V+
Sbjct: 1316 VTAKVRKVAEFGVFLVVDNSNNVSGLCHVSKLADKPVAKDKIKDMYKEGDIVKAKVVSVN 1375

Query: 1395 KEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1454
               RRI+  +K S  K   +  +   ++   +        +    +E   +  +D+DM S
Sbjct: 1376 PTARRINFSLKYSQVKGSEEEDEDMEDDSDVDVDMADDVDSDDGGIE---LDDEDVDMRS 1432

Query: 1455 -------EDGGSLVLAQIES-----RASVPPLEVNLDD---EQPDMDNGISQNQGHTDEA 1499
                   EDG   V ++ ES     +A+VP L  +  D      D D     +   +D A
Sbjct: 1433 VKSAESDEDGADEVESEAESETNATKAAVPGLSTSGFDWTGATLDFDQVERGHDSDSDGA 1492

Query: 1500 KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYM 1559
             T  ++ ++ A  KE    +          L+   P++  +FERL+   PNS+ +W++YM
Sbjct: 1493 ATKKKRKSKKATIKEDRTGD----------LDAFGPQSVADFERLLLGQPNSAEMWVRYM 1542

Query: 1560 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1619
             F   + ++EKAR IA RAL TIN REE EKL++W A  +LEN++ +  ++A+   F+ A
Sbjct: 1543 IFQRELNEIEKARQIARRALSTINPREEKEKLDVWTALLHLENDFVS--DDAIEATFKEA 1600

Query: 1620 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLK----Q 1673
             Q+ D +++H  ++ +Y    + + AD L   M+K   F      WL     L+      
Sbjct: 1601 CQHNDSREIHERMIKIYISASKFEKADNLYQSMMKNKSFTPDPNFWLGYATFLMDVLSPP 1660

Query: 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDL 1731
                 +A++QRA  S+P  +H     + A LEFK  NG A+RGR++FEG++S +P + D+
Sbjct: 1661 SPTRARALLQRATQSVPSTQHRHLTQKFAALEFKSANGDAERGRTIFEGLVSTWPNKGDV 1720

Query: 1732 WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1791
            W +YL  E+  G  + +R LFER   +    + M  +FKK+ E+E+S G  + +E VK  
Sbjct: 1721 WDVYLSLELSHGTEENVRDLFERMSKVGKKKRAMG-VFKKWAEWEESKGNRKGVERVKAL 1779

Query: 1792 AMEYVES 1798
              ++ E+
Sbjct: 1780 EQQWREA 1786



 Score =  187 bits (475), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 201/759 (26%), Positives = 337/759 (44%), Gaps = 79/759 (10%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRG---LARAADALDP--------------ILDNEIEANE 45
           + G V +V+ +D+V+ LP  L G   L   +D L+               I ++E E+ E
Sbjct: 154 ILGQVTDVSHQDIVLALPNNLVGYVPLTAVSDKLNERLEKLLKEEEDGADIAEDEDESFE 213

Query: 46  DNLLPTIFHVGQLV-SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 104
           D  L  +F +GQ + +C+    DD  +   ++++ LS+   L+ KGLS   +    ++ A
Sbjct: 214 DVHLEDMFTIGQYMRACVTATTDDSAR--ARKRLELSIEPKLVNKGLSKRKMPINSMVQA 271

Query: 105 YVKSIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVY 161
            V S EDHG ++  GL      GFLP+  L        V+ G +   +V  ++   ++V 
Sbjct: 272 SVVSNEDHGLVMDLGLDDSKIKGFLPKGELGPKIQHSKVQEGAVFMCLVTGLNSDGRIVK 331

Query: 162 LSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
           LS+D          +   +  +ID+ +PG  V   V     + +    L     T D +H
Sbjct: 332 LSADHSKAGNLAKGNTLTEAPTIDVFLPGTAVDVLVADTTASTLTGKILGLADATADAYH 391

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL----------HNRAP 267
              T    +    Y    KV ARILF  P S    VG++L  +++            R P
Sbjct: 392 SGATEKGGDVAQKYKIGSKVKARILFTCPDSDPARVGVSLLDHVVALSTRMSGKPKERKP 451

Query: 268 P-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---Y 323
               + +  I D +KVV+V   LG   ++    V    +  IS ++++ V  L +    Y
Sbjct: 452 ALDLMPISTIIDNAKVVKVAPALGAFFELGVRDVL--GFAHISRLSDDRVDVLSEDAGAY 509

Query: 324 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA- 380
           K GS  R RI+G+  ++GL    L+    +       D+KPG VVKGKV  +  D  GA 
Sbjct: 510 KLGSTHRARIVGYNSIDGLFQLSLEQKVLDQAFLRIEDIKPGEVVKGKVHKLIADKKGAS 569

Query: 381 --IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV 436
             +V    G+  L    H+++ ++  P +KF+ G  +  RVL  +  R  I +T KK+LV
Sbjct: 570 AVLVHLSDGITGLVTEMHLADVKLQHPERKFREGVAVTARVLYTEPARHQIQLTLKKSLV 629

Query: 437 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 496
            S +   + Y+  ++     G +  + K+G  VRFY  V  + P +E+      + +  +
Sbjct: 630 NSDVKPWTDYSMISEGSKGPGILVNVLKNGAKVRFYGDVTAWLPVAEMSEAFMDDATRHF 689

Query: 497 HVGQVVKCRIMSSIPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 552
             GQVV  R++S     R++ +S      + P + +  + +  G++  G V +   + V 
Sbjct: 690 TKGQVVNVRVISVNAKDRQMLVSCKDPAAVDPNKEAAFNALNPGNVTKGTV-LEKSDDVA 748

Query: 553 VYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLDN--ESSNLLLSAK 608
              +  G  KG +   HL D  E   +  MK  I+ G   + L+VL+    S  + +S K
Sbjct: 749 TLDLGHGV-KGVLRIGHLTDGSEKKDISTMKK-IRVGGTLEDLVVLNKLLRSKVVTVSNK 806

Query: 609 YSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD---- 662
            SL   AQ  +L ++   +    +VHG+V  I+    FV F   ++G   +S+  +    
Sbjct: 807 PSLRKDAQASKLITNVEELTSGEIVHGFVRGILPDKVFVEFGNGVSGAVFKSQMTEEILT 866

Query: 663 ----GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
               G R D        QS+   I  V+   G   LS+K
Sbjct: 867 APNFGLRKD--------QSMTCRITYVDPTNGMFWLSMK 897



 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 162/373 (43%), Gaps = 43/373 (11%)

Query: 180 ISIDLLVPGMMVSTRVQSILEN-----GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
           + I+ + PG +V  +V  ++ +      V++      TG V   HL +     + +  + 
Sbjct: 543 LRIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGLVTEMHLADV-KLQHPERKFR 601

Query: 235 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 294
           +   V AR+L+ +P    + LTL   L+++   P         D S +    +G G+L++
Sbjct: 602 EGVAVTARVLYTEPARHQIQLTLKKSLVNSDVKP-------WTDYSMISEGSKGPGILVN 654

Query: 295 IPSTPV------STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHL----- 339
           +              A++ +++++E  +    + + +G  V VR++      R +     
Sbjct: 655 VLKNGAKVRFYGDVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISVNAKDRQMLVSCK 714

Query: 340 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-- 397
           +  A    K +AF  L        PG V KG V+      A +    GVK +  + H+  
Sbjct: 715 DPAAVDPNKEAAFNAL-------NPGNVTKGTVLEKSDDVATLDLGHGVKGVLRIGHLTD 767

Query: 398 -SEFEIVKPGKKFKVGA---ELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATD 451
            SE + +   KK +VG    +LV     ++SK +TV++K +L K   A  ++++  E T 
Sbjct: 768 GSEKKDISTMKKIRVGGTLEDLVVLNKLLRSKVVTVSNKPSLRKDAQASKLITNVEELTS 827

Query: 452 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 511
             I HG++  I     FV F NGV G   +S++  +    P+      Q + CRI    P
Sbjct: 828 GEIVHGFVRGILPDKVFVEFGNGVSGAVFKSQMTEEILTAPNFGLRKDQSMTCRITYVDP 887

Query: 512 ASRRINLSFMMKP 524
            +    LS  ++P
Sbjct: 888 TNGMFWLSMKLEP 900



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 19/179 (10%)

Query: 1238 KIEDLSPNMIVQGYVKNVTS--KGC---FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            +IED+ P  +V+G V  + +  KG     + LS  +   V   +L+D  ++ PE++F  G
Sbjct: 544  RIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGLVTEMHLADVKLQHPERKFREG 603

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVG-DIVIGQIK---RVE 1346
              V  RVL  EP   ++++TLK S  +S     ++ + +S    G  I++  +K   +V 
Sbjct: 604  VAVTARVLYTEPARHQIQLTLKKSLVNSDVKPWTDYSMISEGSKGPGILVNVLKNGAKVR 663

Query: 1347 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             YG        ++     V+E+SE  +D+    +  G+ V V+++ V+ + R++ +  K
Sbjct: 664  FYG--------DVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISVNAKDRQMLVSCK 714



 Score = 43.9 bits (102), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 152/690 (22%), Positives = 277/690 (40%), Gaps = 81/690 (11%)

Query: 740  IGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAG----ATVESGSVIQAAILDVA 794
            I S+++  V  + D G+V+    + S + GF+   +L      + V+ G+V    +  + 
Sbjct: 265  INSMVQASVVSNEDHGLVMDLGLDDSKIKGFLPKGELGPKIQHSKVQEGAVFMCLVTGLN 324

Query: 795  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT-VNAIVEIVKENYL- 852
               R+V LS          + N+  +A         + D+ +  T V+ +V     + L 
Sbjct: 325  SDGRIVKLSADHSKAGNLAKGNTLTEA--------PTIDVFLPGTAVDVLVADTTASTLT 376

Query: 853  --VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI 910
              +L L +      Y S +        QK  +  +     +   P S  A   + LL  +
Sbjct: 377  GKILGLADATAD-AYHSGATEKGGDVAQKYKIGSKVKARILFTCPDSDPARVGVSLLDHV 435

Query: 911  SETETSSSKRAK-KKSSYD---VGSLV-QAEITEIKP-----LELRLKFGIGFHGRIHIT 960
                T  S + K +K + D   + +++  A++ ++ P      EL ++  +GF    HI+
Sbjct: 436  VALSTRMSGKPKERKPALDLMPISTIIDNAKVVKVAPALGAFFELGVRDVLGF---AHIS 492

Query: 961  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL 1020
             ++DD+ +V+      +K+G T  ARI+   N  D     L++LS++  +L       + 
Sbjct: 493  RLSDDRVDVLSEDAGAYKLGSTHRARIVG-YNSIDG----LFQLSLEQKVL------DQA 541

Query: 1021 LFEECDVSIGQRVTGYVYK-VDNEWALLTISRHLKAQL--FILDSAYEPSELQEFQRRFH 1077
                 D+  G+ V G V+K + ++     +  HL   +   + +      +LQ  +R+F 
Sbjct: 542  FLRIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGLVTEMHLADVKLQHPERKFR 601

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
             G AVT  VL     +  ++L L+      S    D+      + I EG    G +  +L
Sbjct: 602  EGVAVTARVLYTEPARHQIQLTLKK-----SLVNSDVKPWTDYSMISEGSKGPGILVNVL 656

Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS-GYDEGQFVKCKVLEI 1196
               G  V       YG        ++    P++   E   D  +  + +GQ V  +V+ +
Sbjct: 657  KN-GAKV-----RFYG--------DVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISV 702

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
            +   R    V     +++D       + L+    T G  LEK +D++   +  G VK V 
Sbjct: 703  NAKDRQML-VSCKDPAAVDPNKEAAFNALNPGNVTKGTVLEKSDDVATLDLGHG-VKGVL 760

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
              G     S K D   +      G +E          LV   VL+    SK V V+ K S
Sbjct: 761  RIGHLTDGSEKKDISTMKKIRVGGTLED---------LV---VLNKLLRSKVVTVSNKPS 808

Query: 1317 DSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
              + A  S+ I N+  L  G+IV G ++ +    +F+   N  + G    S+++E+ +  
Sbjct: 809  LRKDAQASKLITNVEELTSGEIVHGFVRGILPDKVFVEFGN-GVSGAVFKSQMTEEILTA 867

Query: 1376 IETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
                 R  + +  +I  VD       L MK
Sbjct: 868  PNFGLRKDQSMTCRITYVDPTNGMFWLSMK 897



 Score = 43.9 bits (102), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 132/337 (39%), Gaps = 66/337 (19%)

Query: 496  YHVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVV 553
            + VG  +K R+ +   A+ R++L+     T   +S  DL K+G ++   V  +   ++VV
Sbjct: 1089 FPVGSALKVRVKAVDIAAGRLDLTAASTVTGKTLSLADL-KVGYVLPARVTKIHDASIVV 1147

Query: 554  YV---IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVL-------DNESSNL 603
             V   IA       I  E LAD  + A       KP  E+ Q  VL       D  +  L
Sbjct: 1148 QVNENIA-----APIFLERLADDYDKA-------KPS-EYKQGDVLRVCVIEVDIPNKKL 1194

Query: 604  LLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
             LSA+ S + S+  LP       D + +  + VV G++  I + G +VR    +  +   
Sbjct: 1195 GLSARPSKVLSST-LPVKDPIIEDKAQLKVHQVVRGFIKKIADNGVYVRLGPHVETYVRV 1253

Query: 658  SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 717
            S   D    D    ++V Q V   I+    +     ++LK S                  
Sbjct: 1254 SNLSDSYIKDWKSAFHVDQLVTGKIISNKEDQRNAQMTLKTSTIQG-------------- 1299

Query: 718  KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 777
                      N  E+        G ++  KV +  +FGV +  +  ++V G     +LA 
Sbjct: 1300 ----------NYVEILEFGDMKAGQIVTAKVRKVAEFGVFLVVDNSNNVSGLCHVSKLAD 1349

Query: 778  ATV---------ESGSVIQAAILDVAKAERLVDLSLK 805
              V         + G +++A ++ V    R ++ SLK
Sbjct: 1350 KPVAKDKIKDMYKEGDIVKAKVVSVNPTARRINFSLK 1386



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 70/364 (19%), Positives = 144/364 (39%), Gaps = 36/364 (9%)

Query: 180  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT-TNWKNDYNQHKK 238
            +S+D +  G      V +I +  V ++      G VD   L +     +  + ++     
Sbjct: 1035 LSLDKVTEGSSYVAFVNNIADRYVWVNLSANVRGRVDFLDLTDDLEQLSAVEENFPVGSA 1094

Query: 239  VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVG--------DIYDQSKVVRVDRGLG 290
            +  R+  VD  +  + LT    +       + +KVG         I+D S VV+V+  + 
Sbjct: 1095 LKVRVKAVDIAAGRLDLTAASTVTGKTLSLADLKVGYVLPARVTKIHDASIVVQVNENIA 1154

Query: 291  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR------HLEGLAT 344
                         A + +  +A++  +    +YK+G  +RV ++          L    +
Sbjct: 1155 -------------APIFLERLADDYDKAKPSEYKQGDVLRVCVIEVDIPNKKLGLSARPS 1201

Query: 345  GILKAS--AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 402
             +L ++    + ++   + +K   VV+G +  +   G  V+    V+    + ++S+  I
Sbjct: 1202 KVLSSTLPVKDPIIEDKAQLKVHQVVRGFIKKIADNGVYVRLGPHVETYVRVSNLSDSYI 1261

Query: 403  VKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
                  F V   +  +++  K   +   +T K + ++     +  + +     I    + 
Sbjct: 1262 KDWKSAFHVDQLVTGKIISNKEDQRNAQMTLKTSTIQGNYVEILEFGDMKAGQIVTAKVR 1321

Query: 461  KIEKHGCF--VRFYNGVQGFAPRSELGLDPGCEPS--SMYHVGQVVKCRIMSSIPASRRI 516
            K+ + G F  V   N V G    S+L   P  +     MY  G +VK +++S  P +RRI
Sbjct: 1322 KVAEFGVFLVVDNSNNVSGLCHVSKLADKPVAKDKIKDMYKEGDIVKAKVVSVNPTARRI 1381

Query: 517  NLSF 520
            N S 
Sbjct: 1382 NFSL 1385



 Score = 41.2 bits (95), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 156/368 (42%), Gaps = 32/368 (8%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYI---LHFGLPSFTGFLP-RNNLAENSGI--DVKPGL 144
            LSL+ V EG    A+V +I D  Y+   L   +     FL   ++L + S +  +   G 
Sbjct: 1035 LSLDKVTEGSSYVAFVNNIADR-YVWVNLSANVRGRVDFLDLTDDLEQLSAVEENFPVGS 1093

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
             L+  V+++D     + L     T +  VT   K +S+  L  G ++  RV  I +  ++
Sbjct: 1094 ALKVRVKAVDIAAGRLDL-----TAASTVTG--KTLSLADLKVGYVLPARVTKIHDASIV 1146

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 264
            +         + +  L + +      ++Y Q   +   ++ VD  ++ +GL+  P  + +
Sbjct: 1147 VQVNENIAAPIFLERLADDYDKAK-PSEYKQGDVLRVCVIEVDIPNKKLGLSARPSKVLS 1205

Query: 265  RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVAEEEVRK 318
               P    + +   Q KV +V R  G +  I    V          YV +S++++  ++ 
Sbjct: 1206 STLPVKDPIIEDKAQLKVHQVVR--GFIKKIADNGVYVRLGPHVETYVRVSNLSDSYIKD 1263

Query: 319  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 375
             +  +     V  +I+  +  +  A   LK S  +G    +    D+K G +V  KV  V
Sbjct: 1264 WKSAFHVDQLVTGKIISNKEDQRNAQMTLKTSTIQGNYVEILEFGDMKAGQIVTAKVRKV 1323

Query: 376  DSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGVK--SKRITV 429
              FG   +V     V  LC +  +++  + K   K  +K G  +  +V+ V   ++RI  
Sbjct: 1324 AEFGVFLVVDNSNNVSGLCHVSKLADKPVAKDKIKDMYKEGDIVKAKVVSVNPTARRINF 1383

Query: 430  THKKTLVK 437
            + K + VK
Sbjct: 1384 SLKYSQVK 1391


>gi|427793247|gb|JAA62075.1| Putative rrna processing protein rrp5, partial [Rhipicephalus
            pulchellus]
          Length = 1840

 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 190/518 (36%), Positives = 278/518 (53%), Gaps = 72/518 (13%)

Query: 1313 LKTSDSRTASQS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
            L T +SR   +S       EI  LS+L VG  + G +K V  +G F+T+    +VGL  +
Sbjct: 1361 LSTRESRLHPESCKDVEDKEIVALSSLTVGTTLRGFVKTVNKHGCFVTV-GCGVVGLIPL 1419

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1425
            S+L   H+       + GE V V + K+   +RR+ LG+      N              
Sbjct: 1420 SKLPA-HLQRSHKAMKIGELVSVVVKKIQASERRLFLGLVHRMQANT------------- 1465

Query: 1426 EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP-- 1483
                   +  R   L NSS      D   +                   ++ LDD  P  
Sbjct: 1466 -------TLPRKRKLSNSSTDEPIFDSSEK-------------------KIKLDDPLPRL 1499

Query: 1484 DMDNGISQN-QGHTDEAKTIDE-----------------KNNRHAKKKEKEEREQEIRAA 1525
            ++D G S + +   D  K ++E                 K +R   ++E+E+ E ++R  
Sbjct: 1500 NLDEGFSWDVEATPDLGKLLEERPAVNSSDDEDGDDGSAKKSRKEIRQEREQAEAQLRKK 1559

Query: 1526 EERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            E  L++    P T D+F+RLV  SPNSS VW++YMAF L  A++EKAR++A RAL  I+ 
Sbjct: 1560 ERMLVDPSREPETVDDFDRLVLVSPNSSIVWLRYMAFHLRQAEIEKARAVARRALSCIDF 1619

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1644
            REE EKLN+W A  NLE+ YG   ++++  VF+ ALQ+ +P KV++ L  +Y    + + 
Sbjct: 1620 REEQEKLNVWTALLNLEHLYGT--QDSLDSVFKEALQFNEPLKVYMHLAQIYVEGNKREQ 1677

Query: 1645 ADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAI 1703
            A++L  +M+ KFK    VWL      +K  Q E  +A++QRAL SLP  +HI  I++ A 
Sbjct: 1678 AEQLYKQMLNKFKQHADVWLSFGLFYMKCGQVEACRALLQRALKSLPSREHIVLITKFAQ 1737

Query: 1704 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1763
            +EFK G A+RG+SMF+ IL  YPKRTDLW +Y+D   +LGDVD  R  FE+A SL+L PK
Sbjct: 1738 MEFKYGDAERGQSMFDSILDNYPKRTDLWIVYVDILTKLGDVDNARKTFEKATSLNLNPK 1797

Query: 1764 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            KMK LFKK+L++EK  G+    E VKQ+A++YV+   A
Sbjct: 1798 KMKSLFKKWLDFEKEHGDASLCEVVKQRAVQYVQERTA 1835



 Score =  196 bits (497), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 218/900 (24%), Positives = 389/900 (43%), Gaps = 83/900 (9%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDP---ILDNEIEANEDN---LLP--TIFHVG 56
           G V +V E  L + LPG + G     +   P   +L    +  +D    +LP   +F  G
Sbjct: 94  GRVQQVQEFGLRVSLPGAITGRVSLTNISQPYSLLLRQFAQGVQDRTTEILPLQKLFQEG 153

Query: 57  QLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 116
           Q V C V+     +    K  + LSL  + +   ++   +Q+GMVL A V SIEDHGY +
Sbjct: 154 QTVVCKVIAAAPVEWGSSKVSVELSLDPAAVNASMTPSVLQKGMVLQAAVSSIEDHGYTM 213

Query: 117 HFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 171
             G+   T FL +          N+G  +  G L+   V +     + + L++ P TV+ 
Sbjct: 214 DCGVDGVTAFLSQAEATPFIKQCNAGHALAVGQLVPCAVLTNTGGGRALQLTARPSTVNA 273

Query: 172 CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 231
            +  +L+  S+D ++PG      V      G+++S+     G     H  +     +   
Sbjct: 274 PL--ELENFSLDYVLPGFRAEVTVIESQSEGLVVSW----NGIEACVHRSHLPGPWDSPE 327

Query: 232 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYD------QSKVVRV 285
           D    + +   +L+V P      L   PYL   + P S    G I         +KVV +
Sbjct: 328 DITVGQTLVGTLLYVQP------LVQRPYLSLQK-PSSRAMFGAIRPGALLEGAAKVVAI 380

Query: 286 DRG-LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 344
           + G + L L+    P    A      VA+E+V         G  +  R++   +++ +  
Sbjct: 381 EAGAVHLRLE----PSGLRALCPRPLVADEDVEDARDFVTAGERLSCRVMALSYMDKVVV 436

Query: 345 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 404
             LK S       T   + PG   +  V  +   G +V     +     + H+S      
Sbjct: 437 VSLKKSMLSEKYVTPDALVPGAKFECTVRQMQRSGILVSLSPWMAGFIQMLHVS-----G 491

Query: 405 PGK-KFKVGAELVFRVLGVK----SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 459
           PG+ +  +G+ +  R+L V       R+ +T ++ LV SK  I++SY +A    +T G I
Sbjct: 492 PGEEQPTLGSRVRCRLLNVDRSFDPPRLLLTCRRALVTSKRPIITSYDDAIPGKLTEGLI 551

Query: 460 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
            ++   G  V FYNG++G+ P  E+    G   +  Y  G+VV CR++   P+  R+ LS
Sbjct: 552 VRVTPQGLLVTFYNGIKGWVPSREMP-HSGHGTNVNYTEGKVVTCRVVDCQPSEERLTLS 610

Query: 520 FMMKPTRVSEDD--------------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 565
             + P    E++               +++G+LVSG V+        V +  +     ++
Sbjct: 611 LKLAPKGEQEEEKQSAQEVTMSMKSGAMEVGTLVSGCVEAKVKGGFTVRL--RTGESASL 668

Query: 566 PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDAS 623
           P +HL+D   H   ++ ++  G     L++  N S +L++S + SL+N+AQ+  L S   
Sbjct: 669 PKQHLSDFEPHCVRLQQLLAEGTNLTNLVIF-NSSESLVVSRRTSLVNAAQRGLLVSHFE 727

Query: 624 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT-YYVGQSVRSNI 682
            + P ++V G +   +  G  +   G + GF P     D    D SK+ + +GQ +   +
Sbjct: 728 DMAPGTLVFGVLLAFVRHGMLLELPGGIRGFVPLKDVADEFITDASKSGFSIGQCLVGRV 787

Query: 683 LDVNSETGRITLSLK-QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 741
             V+SE  ++ LS   +SC      S M       E +A   + +   S L+  +   +G
Sbjct: 788 TKVDSEKQQVWLSTSMRSCGEKNFGSTM-------ECLAAQLTDEELISRLEQTQVPNVG 840

Query: 742 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD 801
           S+I   V + ++   +V  +   +V    T   + G  + SGS  +A +L  + A   V+
Sbjct: 841 SIIRVTVQDVDEENQLVHCKIAENVLSG-TAETIPGRNIASGSTHEAVVLHCSTAHSNVE 899

Query: 802 LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 861
           L L    +   R  ++ ++ +   R+ ++ + L  H   N  V ++   +L L +P  +H
Sbjct: 900 LCLDPQVV---RSVSAAKRTKPVLRRIQSGRVL--HLKPNHAVVLLHSGHLCL-VPTKSH 953



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 161/381 (42%), Gaps = 73/381 (19%)

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
            ++QEF  R  +  A+TG V S+    +   L+LR F  G+ D+T +I    +Q    EG 
Sbjct: 98   QVQEFGLRVSLPGAITGRV-SLTNISQPYSLLLRQFAQGVQDRTTEILP--LQKLFQEGQ 154

Query: 1128 IVGGRI---------------------SKILSGVGGLVVQIGPHLYGRVHFTELKNI--- 1163
             V  ++                     + + + +   V+Q G  L   V   E       
Sbjct: 155  TVVCKVIAAAPVEWGSSKVSVELSLDPAAVNASMTPSVLQKGMVLQAAVSSIEDHGYTMD 214

Query: 1164 CVSDPLSGY-DEGQFDPL-----SGYD--EGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1215
            C  D ++ +  + +  P      +G+    GQ V C VL       G   ++L+ R S  
Sbjct: 215  CGVDGVTAFLSQAEATPFIKQCNAGHALAVGQLVPCAVLT---NTGGGRALQLTARPS-- 269

Query: 1216 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-----SKGCFIMLSRKLDA 1270
                         V+ P   LE +E+ S + ++ G+   VT     S+G  ++    ++A
Sbjct: 270  ------------TVNAP---LE-LENFSLDYVLPGFRAEVTVIESQSEG-LVVSWNGIEA 312

Query: 1271 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1330
             V  S+L  G  +SPE +  +G+ + G +L V+PL +R  ++L+   SR           
Sbjct: 313  CVHRSHLP-GPWDSPE-DITVGQTLVGTLLYVQPLVQRPYLSLQKPSSRAM-------FG 363

Query: 1331 NLHVGDIVIGQIK--RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
             +  G ++ G  K   +E+  + + +E + L  LC    ++++ V++      AGE++  
Sbjct: 364  AIRPGALLEGAAKVVAIEAGAVHLRLEPSGLRALCPRPLVADEDVEDARDFVTAGERLSC 423

Query: 1389 KILKVDKEKRRISLGMKSSYF 1409
            +++ +    + + + +K S  
Sbjct: 424  RVMALSYMDKVVVVSLKKSML 444



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 74/389 (19%), Positives = 149/389 (38%), Gaps = 70/389 (17%)

Query: 933  VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 992
            V A +  ++ L+L++    G+ GR+H++ + D+     E+    F+ G  +   +I +  
Sbjct: 1123 VMAIVRSVEKLQLKITLENGYKGRVHVSFI-DENPKEGESPLKRFEPGDQLEVYVIER-- 1179

Query: 993  KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV----------SIGQRVTGYVYKVDN 1042
                         + P       I  +  F EC +          + G  V GY      
Sbjct: 1180 -------------VIPLHSRALAITGRRNFCECSLFPAEKNEFAPAPGSEVIGYFSHFSE 1226

Query: 1043 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1102
               +  ++ +   +L +L+    PS L         G+AV   VL  ++       V+  
Sbjct: 1227 GSLVFALTHNKMGRLPVLNMDLPPSRLGYIHTELKAGQAVKVTVLRADESS-----VVEL 1281

Query: 1103 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1162
             Q G++  +VD              +V G +    +GVG  V          +       
Sbjct: 1282 SQLGVTTLSVD-------------SVVNGYVVSARAGVGACV---------SLPLGHRGT 1319

Query: 1163 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1222
            I ++D    + +     ++ Y + ++++C +++I      T+H+            ST  
Sbjct: 1320 ISITDICDDFSQAA-TLMANYIQERYLRCYIIDIDSET-NTYHL------------STRE 1365

Query: 1223 SDLSTDV--DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1280
            S L  +   D   K +  +  L+    ++G+VK V   GCF+ +   +   + LS L   
Sbjct: 1366 SRLHPESCKDVEDKEIVALSSLTVGTTLRGFVKTVNKHGCFVTVGCGVVGLIPLSKLP-A 1424

Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRV 1309
            +++   K   IG+LV+  V  ++   +R+
Sbjct: 1425 HLQRSHKAMKIGELVSVVVKKIQASERRL 1453


>gi|335310117|ref|XP_001926809.2| PREDICTED: protein RRP5 homolog [Sus scrofa]
          Length = 1863

 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/305 (49%), Positives = 214/305 (70%), Gaps = 11/305 (3%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERL--LEK---DAPRTP---DEFERLVRSSPNSSFV 1554
            DEK  +  KKK K+ERE E + AE+ L  LE+   D  R P   D+F+RLV SSPNSS +
Sbjct: 1554 DEKPEQATKKKSKKERELEKQKAEKELSRLEEALMDPGRQPESADDFDRLVLSSPNSSIL 1613

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1614 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1671

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1674
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1672 VFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRG 1731

Query: 1675 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
            Q G    V+QRAL  LP+ +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1732 QAGASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1791

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1792 VYIDMIIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1851

Query: 1794 EYVES 1798
            EYVE+
Sbjct: 1852 EYVEA 1856


>gi|332212080|ref|XP_003255151.1| PREDICTED: protein RRP5 homolog [Nomascus leucogenys]
          Length = 1804

 Score =  290 bits (741), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 148/331 (44%), Positives = 223/331 (67%), Gaps = 16/331 (4%)

Query: 1470 SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1529
            ++PPL  + D E+ +  +  +Q            +K ++  ++ EK++ E+E+   EE L
Sbjct: 1481 ALPPLAESSDSEEDEKPHQATQ------------KKKSKKERELEKQKAEKELSRIEEAL 1528

Query: 1530 LEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1588
            ++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE 
Sbjct: 1529 MDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQ 1588

Query: 1589 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1648
            EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL
Sbjct: 1589 EKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGEL 1646

Query: 1649 LYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFK 1707
              +M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+
Sbjct: 1647 YNRMLKRFRQEKAVWIKYGAFLLRRSQAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQ 1706

Query: 1708 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1767
             G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF
Sbjct: 1707 LGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKF 1766

Query: 1768 LFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1767 FFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1797



 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 173/539 (32%), Positives = 280/539 (51%), Gaps = 30/539 (5%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
           M++ G V EVNE +LVI LP GL+G  +  +  D      NE    E  L     LP +F
Sbjct: 84  MRILGCVKEVNELELVISLPNGLKGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
             G LV C+V  L    +  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 144 SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201

Query: 114 YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
           Y++  G+     FLP     E     N G  +K G  L  +V  +     VV LS+    
Sbjct: 202 YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSTGHSE 261

Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
           VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FLT+FTG VD  HL        
Sbjct: 262 VSTAIATEEQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLD------- 314

Query: 229 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV---GDIYDQSKVVRV 285
                     V A IL + P +R V L+L P  L    P + +     G + D   V   
Sbjct: 315 -PXXXXXXXXVRACILCIHPRTRVVRLSLRPIFLQPGRPLTRLSCQNFGAVLDDVPVQGF 373

Query: 286 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
            +  G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA  
Sbjct: 374 FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 430

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
            L+ S  E     + D++PG VVKG V+ + S+G +V+    ++ L P  H+++  +  P
Sbjct: 431 SLRTSIIEAQYLRYHDIQPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 490

Query: 406 GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
            KK+ +G E+  RVL    ++K++ +T KKTL++SKL +++ YA+A   L THG+I +++
Sbjct: 491 EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 550

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
            +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF +
Sbjct: 551 DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKL 609



 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 248/1044 (23%), Positives = 421/1044 (40%), Gaps = 193/1044 (18%)

Query: 379  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--------LGVKSKRITVT 430
            GA  +   GV A   L H+S+ + V   + FK G     R+        L + S R ++ 
Sbjct: 378  GATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSII 437

Query: 431  HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 490
              + L          Y +     +  G +  I+ +G  V+    ++G  P   L      
Sbjct: 438  EAQYL---------RYHDIQPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMK 488

Query: 491  EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV-------KLGSLVSGVV 543
             P   YH+G  VKCR++   P ++++ ++  +K T +     V       K G    G +
Sbjct: 489  NPEKKYHIGDEVKCRVLLCDPEAKKLMMT--LKKTLIESKLPVITCYADAKPGLQTHGFI 546

Query: 544  DVVTPNAVVV--YVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 600
              V     +V  Y   +G   K  + TE++ D  E       V+K       + VL+ E 
Sbjct: 547  IRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDP-ERVFYTGQVVK-------VAVLNCEP 598

Query: 601  SN--LLLSAKYS------------------LINSAQ---------------QLPSDASHI 625
            S   +LLS K S                   IN  Q               Q P + S I
Sbjct: 599  SKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLLCRKPALVSTVEGGQDPKNFSEI 658

Query: 626  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 659  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 718

Query: 686  NSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIG 741
            + E  R+ LSL+ S C   D +      L +  E++  ++S  S  +   ++ +     G
Sbjct: 719  DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPG 778

Query: 742  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 800
              ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V
Sbjct: 779  MFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEV 838

Query: 801  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 860
             +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  
Sbjct: 839  HVSLHQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETG 880

Query: 861  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 919
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 881  HLAAFSLSSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPT 938

Query: 920  RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 960
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 939  RKDSETVDEDEEVDPSLTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHAS 998

Query: 961  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIK 1007
             + DD         +  K+G+TVTAR+I      DM K+F +             ELS++
Sbjct: 999  HILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVR 1053

Query: 1008 PSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFIL 1060
            PS L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L
Sbjct: 1054 PSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLL 1113

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
             ++     L+   ++F +G+A+   V+  +  K  L L L             I    ++
Sbjct: 1114 LTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE 1160

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                EG++  GR+ K+     GL V      +G++    + ++  S     Y E    PL
Sbjct: 1161 ----EGEVAMGRVVKVTPN-EGLTVSFP---FGKIGTASIFHMSDS-----YSE---TPL 1204

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
              +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P   +  I+
Sbjct: 1205 EDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQ 1251

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKL 1294
            D+    +++GYV ++   G F  L   +      SN+S     SP K+       P GKL
Sbjct: 1252 DIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSNVSQ---HSPSKKALYNKHLPEGKL 1308

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDS 1318
            +  RVL +      VE++    D+
Sbjct: 1309 LTARVLRLNHQKNLVELSFLPGDT 1332



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 137/600 (22%), Positives = 245/600 (40%), Gaps = 66/600 (11%)

Query: 245 FVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 304
             D   ++V L+LNP  ++       +K G +   +     D G   L+DI      T A
Sbjct: 158 ITDRGKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHGY--LVDIGVD--GTRA 213

Query: 305 YVTISDVAEEEVRKLEK--KYKEG---SCVRVRILGFRHLEGLATG---ILKASAFEGLV 356
           ++ +   A+E +R+  K  K K G   +C+  ++ G   +  L+TG   +  A A E   
Sbjct: 214 FLPLLK-AQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSTGHSEVSTAIATEEQS 272

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           +  +++ PG+VVK +V  V  FG  + F      +    H+             V A ++
Sbjct: 273 WNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPXXXXX---XXXVRACIL 329

Query: 417 F-----RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 471
                 RV+ +  + I +   + L +       ++    D +   G+    +K G   R 
Sbjct: 330 CIHPRTRVVRLSLRPIFLQPGRPLTRLSC---QNFGAVLDDVPVQGFF---KKAGATFRL 383

Query: 472 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 531
            +GV  +A  S L           +  G   KCRI   I  S+   L+ +   T + E  
Sbjct: 384 KDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRI---IDYSQMDELALLSLRTSIIEAQ 440

Query: 532 LVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
            ++      G++V G V  +    ++V V  +   +G +P  HLAD L     MK+  K 
Sbjct: 441 YLRYHDIQPGAVVKGTVLTIKSYGMLVKVGEQ--MRGLVPPMHLADIL-----MKNPEKK 493

Query: 587 GYEFDQL----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
            +  D++    L+ D E+  L+++ K +LI S   + +  +   P    HG++  + + G
Sbjct: 494 YHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVKDYG 553

Query: 643 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC-- 700
           C V+F   + G  P+ +       D  + +Y GQ V+  +L+      R+ LS K S   
Sbjct: 554 CIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLSSDP 613

Query: 701 --------CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 752
                    S      +    LL  K A++ S+   G + K       G ++ G V    
Sbjct: 614 EPKKEPAGHSQKKGKAINIGQLLCRKPALV-STVEGGQDPKNFSEIHPGMLLIGFVKSIK 672

Query: 753 DFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 805
           D+GV + F   S + G      ++   V S       G  + A + +V + ++ + LSL+
Sbjct: 673 DYGVFIQFP--SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLR 730



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 148/335 (44%), Gaps = 57/335 (17%)

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRISKI 1136
            V   +L I+   +++RL LRP           +S  N    + +  + G     G   ++
Sbjct: 324  VRACILCIHPRTRVVRLSLRPIFLQPGRPLTRLSCQNFGAVLDDVPVQGFFKKAGATFRL 383

Query: 1137 LSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1195
              GV           Y R+ H ++ KN+             F+P   +  G   KC++++
Sbjct: 384  KDGVLA---------YARLSHLSDSKNV-------------FNP-EAFKPGNTHKCRIID 420

Query: 1196 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1255
             S+         LSLR+S+                   ++L +  D+ P  +V+G V  +
Sbjct: 421  YSQMDELAL---LSLRTSI----------------IEAQYL-RYHDIQPGAVVKGTVLTI 460

Query: 1256 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
             S G  + +  ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK 
Sbjct: 461  KSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK- 519

Query: 1316 SDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
               +T  +S+   I   ++   G    G I RV+ YG  +   N N+ GL    ELS ++
Sbjct: 520  ---KTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEY 575

Query: 1373 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + + E ++  G+ VKV +L  +  K R+ L  K S
Sbjct: 576  IPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLS 610



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 130/317 (41%), Gaps = 63/317 (19%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            I  G +V G +  I S   G++V++G  + G V    L +I + +P   Y  G       
Sbjct: 447  IQPGAVVKGTVLTIKSY--GMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIG------- 497

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
             DE   VKC+VL      +    + ++L+ +L              +++    +    D 
Sbjct: 498  -DE---VKCRVLLCDPEAK---KLMMTLKKTL--------------IESKLPVITCYADA 536

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
             P +   G++  V   GC +     +   V    LS  Y+  PE+ F  G++V   VL+ 
Sbjct: 537  KPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNC 596

Query: 1303 EPLSKRVEVTLKTSD--------------------------------SRTASQSEINNLS 1330
            EP  +R+ ++ K S                                 S      +  N S
Sbjct: 597  EPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLLCRKPALVSTVEGGQDPKNFS 656

Query: 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1390
             +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V  K+
Sbjct: 657  EIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKV 715

Query: 1391 LKVDKEKRRISLGMKSS 1407
              VD+EK+R+ L ++ S
Sbjct: 716  TNVDEEKQRMLLSLRLS 732



 Score = 41.2 bits (95), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 74/136 (54%), Gaps = 13/136 (9%)

Query: 1276 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS-----EINNLS 1330
            ++SD Y E+P ++F   K+V   +LS       + ++L++S +   ++S     EIN++ 
Sbjct: 1194 HMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPETKSKVEDPEINSIQ 1251

Query: 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA----GEKV 1386
            ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  + + +Y      G+ +
Sbjct: 1252 DIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSNVSQ-HSPSKKALYNKHLPEGKLL 1309

Query: 1387 KVKILKVDKEKRRISL 1402
              ++L+++ +K  + L
Sbjct: 1310 TARVLRLNHQKNLVEL 1325


>gi|330929198|ref|XP_003302547.1| hypothetical protein PTT_14414 [Pyrenophora teres f. teres 0-1]
 gi|311322015|gb|EFQ89360.1| hypothetical protein PTT_14414 [Pyrenophora teres f. teres 0-1]
          Length = 1791

 Score =  286 bits (733), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 241/900 (26%), Positives = 445/900 (49%), Gaps = 84/900 (9%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARI 987
            G+L    I  +K  +L ++      GRI ++E+ D   ++ +  N  ++FK+ + + AR+
Sbjct: 935  GTLTTVRIKTVKSTQLNVELAGNVLGRISVSELFDGWDSIPDKKNPTAHFKMNEKIQARV 994

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV------SIGQRVTGYVYK 1039
            + + +  + +  FL   S       V E+ +    +  E DV      + G   T +V  
Sbjct: 995  LGRHDARNFR--FLPITSRSNHKTPVYEMTANTDRIKTEADVLSLDKITPGSSHTAFVNN 1052

Query: 1040 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1099
            + + +  + IS +++ ++   D   E  +L   +  F +G A+   V +++     L L 
Sbjct: 1053 IADRYVWVNISANVRGRIDFFDLTEELEKLANVEENFPVGSALRVRVKAVDVAAGKLDLT 1112

Query: 1100 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1159
                   ++ KT+ + +      I  G I+  R++KI      +VVQI   L   +   +
Sbjct: 1113 A---VSTVTGKTLSLQD------IKVGYILPARVTKIHEA--SIVVQINEKLAAPIFLEQ 1161

Query: 1160 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1219
            L +                    YD  +  K KV ++ R       +++ + +   G+S+
Sbjct: 1162 LAD-------------------DYDMAKPNKFKVGDVLRACV----IDIDIPNKKLGLSA 1198

Query: 1220 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1279
              S  LS+ +      ++    L  + +V+G++K+V S G ++ L   ++A V +S+LSD
Sbjct: 1199 RPSRVLSSSLTVRDPEIKDKNQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSD 1258

Query: 1280 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1339
             Y++  +  F + +LV G+++S +   +  +++LKTS  +  + +E     +L VG IV 
Sbjct: 1259 EYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQ-GNYTEPLEFGDLKVGQIVT 1317

Query: 1340 GQIKRVESYGLFITIENTNLV-GLCHVSELSEDHVDN--IETIYRAGEKVKVKILKVDKE 1396
             +++ VE +G+F+ ++N+N V GLCH+S+L+++ VD   I+ +Y+  + VK K++K++ +
Sbjct: 1318 ARVRHVEDFGVFLVVDNSNNVSGLCHISQLADNAVDKDKIKDMYKKDDIVKAKVVKIEPK 1377

Query: 1397 KRRISLGMKSSYFKNDADNLQM--SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1454
            +R+IS  +K S  K+D ++  M  +SE++  +  +  G       ++  SV       ES
Sbjct: 1378 QRKISFTLKYSQIKDDGEDEDMEDASEDDLADDSDSDGGIELDEDIDMRSVK----SAES 1433

Query: 1455 EDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE 1514
            +D   L        A     E N DDE            G      T+D    + A   +
Sbjct: 1434 DDDVEL--------ADADEAEDNSDDEDTQTPAQGLSTSGFDWTGATLDIDQQKRAADSD 1485

Query: 1515 KEE-------REQEIRAAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1565
             E+       + ++    E+R  + DA  P++  ++ERL+   PNS+ +W++YM F   +
Sbjct: 1486 SEDDTPKKKKKSKKASIKEDRTGDLDAYGPQSVADYERLLLGQPNSAEMWVRYMVFQREL 1545

Query: 1566 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1625
              +EKAR +A RAL TIN REE EKL++W A  +LEN++ +  ++ +  VF+ A Q  D 
Sbjct: 1546 NKIEKARQVARRALVTINPREEKEKLDVWTALLHLENDFAS--DDTIEGVFKEACQNNDS 1603

Query: 1626 KKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQQQ----EGVQ 1679
            +++H  ++ +Y  + +   AD L   M+K   F    K WL     L+   Q       +
Sbjct: 1604 REMHERMIKIYISSGKLDKADSLYQSMMKNKSFTQDPKFWLSYAAFLMDVLQPPSASQAR 1663

Query: 1680 AVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLD 1737
            A++QRA  S+   +H     + A LEFK  NG A+RGR++FEG++  + K+ D+W +YL 
Sbjct: 1664 ALLQRATQSVASTQHRYLTQKFAALEFKSPNGDAERGRTIFEGLVDTFAKKGDVWDMYLM 1723

Query: 1738 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
             E   GD D +R LFER   +     +++ +FKK+ E+E  VG ++ +E VK    ++ E
Sbjct: 1724 LEQSHGDEDKVRDLFERMTKVG-KSSRVRSVFKKWAEWENGVGSKKGVERVKMLEEQWRE 1782



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 194/747 (25%), Positives = 339/747 (45%), Gaps = 60/747 (8%)

Query: 5   GVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---------DNEIEANEDNL---- 48
           G + +++ +DLV+ LP  L G   L    D L+  L         D +  ++ED+     
Sbjct: 157 GQIIDISHQDLVLALPNNLVGYVPLTAVCDKLNERLEKLLKDEDSDKKEGSDEDDFEDVY 216

Query: 49  LPTIFHVGQLV-SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
           L  +F VGQ V +CI    +D+ +   ++++ LS+   L+ KGL+   +    ++ A V 
Sbjct: 217 LKDMFSVGQYVRACITATNEDNAR--ARKRLELSIDPKLVNKGLTKRKIPVNSMVQASVV 274

Query: 108 SIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSS 164
           S EDHG ++  GL   +  GFLP+  L        ++ G +   +V  I+   ++V LS+
Sbjct: 275 SNEDHGLVMDLGLGDANLKGFLPKGELGPKIQHAKIQEGAVFMCLVTGINSDGRIVKLSA 334

Query: 165 DPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 222
           D   V      +   +  +ID+ +PG  V   V     + ++   L     T D +H   
Sbjct: 335 DHTKVGNVAKGNTLTEAPTIDVFLPGTAVDVLVADTTSSTLVGKILGLIDATADAYHSGA 394

Query: 223 TFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL----------HNRAPPSH 270
           T    +    Y    KV ARILF  P S  R VG++L  +++            R PP+ 
Sbjct: 395 TEKAADVSQKYKIGTKVKARILFTCPDSEPRKVGVSLLDHVVSLSTRMSGKPKERKPPTD 454

Query: 271 V-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSC 328
           +  + ++ + +KVV+V    G   D+    V   A+++ +SD   + + +   ++K  S 
Sbjct: 455 LLPISNVVENAKVVKVAPAQGAFFDLGIKDVVGFAHISRLSDDKVDAISEDSGQFKLDST 514

Query: 329 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQ 383
            + RI+G+  L+G+    L+    +       D+K G VVKGKV  +  D  GA   +++
Sbjct: 515 HKARIIGYNALDGMFQLSLEQKILDQPFLRIEDIKAGQVVKGKVHKLIADKTGAAAVLIR 574

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLA 441
              G+  L P  H+++  +  P +KF+ G  +  RVL  +  R  I +T KK+LV S   
Sbjct: 575 LADGITGLVPEAHLADLRLQHPERKFREGVPVTARVLYTEPARHQIQLTLKKSLVNSDAK 634

Query: 442 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 501
             ++Y   ++ L   G +  + ++G  VRFY  V+ + P +E+      + +  +  GQV
Sbjct: 635 PWTNYEMLSEGLSGPGILVSVRRNGATVRFYGDVKAWLPVAEMSEAFVDDATRHFTNGQV 694

Query: 502 VKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL-----VSGVVDVVTPNAVVVYVI 556
           VK RI+ S+ A  R  L     P  V  +      +L     VSG V   + ++  +  I
Sbjct: 695 VKVRII-SVDAKERQLLVSCKDPAAVDSNREAAFNALNPSDIVSGTVLEKSDDSATLD-I 752

Query: 557 AKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLI 612
             G  KG +   HL D    +  + MK  I+ G   ++L+VL    ++ +  +S K SL 
Sbjct: 753 GNGV-KGILRIGHLTDGSAKKDMSTMKK-IRIGGTLEELVVLTKHGKTRSATVSNKPSLR 810

Query: 613 NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 670
             A   +L      +     VHG+V  I+    FV     ++G   +S+  +   ++ + 
Sbjct: 811 KDAHASKLAISIEDVQAGETVHGFVRGILPDKIFVELGNGISGVLFKSQLPEEMISEPNF 870

Query: 671 TYYVGQSVRSNILDVNSETGRITLSLK 697
                QS+ + +  V+   G   LS+K
Sbjct: 871 GLRKDQSITARVTHVDVGKGFFWLSMK 897



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 23/181 (12%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSK-----GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            +IED+    +V+G V  + +         I L+  +   V  ++L+D  ++ PE++F  G
Sbjct: 544  RIEDIKAGQVVKGKVHKLIADKTGAAAVLIRLADGITGLVPEAHLADLRLQHPERKFREG 603

Query: 1293 KLVAGRVLSVEPLSKRVEVTLK----TSDSRTASQSEINNLSNLHVGDIVIGQIKR---- 1344
              V  RVL  EP   ++++TLK     SD++  +  E+  LS    G  ++  ++R    
Sbjct: 604  VPVTARVLYTEPARHQIQLTLKKSLVNSDAKPWTNYEM--LSEGLSGPGILVSVRRNGAT 661

Query: 1345 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404
            V  YG        ++     V+E+SE  VD+    +  G+ VKV+I+ VD ++R++ +  
Sbjct: 662  VRFYG--------DVKAWLPVAEMSEAFVDDATRHFTNGQVVKVRIISVDAKERQLLVSC 713

Query: 1405 K 1405
            K
Sbjct: 714  K 714



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 105/506 (20%), Positives = 190/506 (37%), Gaps = 73/506 (14%)

Query: 342  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 401
            + TG       +  + T  D+K G +   ++  V S    V+  G V     +  + +  
Sbjct: 912  MKTGEALVDPVDSKILTTDDIKFGTLTTVRIKTVKSTQLNVELAGNVLGRISVSELFDGW 971

Query: 402  IVKPGKK-----FKVGAELVFRVLGVKSKR-------ITVTHKKTLVKSKLAILSSYAEA 449
               P KK     FK+  ++  RVLG    R        + ++ KT V    A        
Sbjct: 972  DSIPDKKNPTAHFKMNEKIQARVLGRHDARNFRFLPITSRSNHKTPVYEMTANTDRIKTE 1031

Query: 450  TDRL----ITHG-----WITKIEKHGCFVRFYNGVQG----FAPRSELGLDPGCEPSSMY 496
             D L    IT G     ++  I     +V     V+G    F    EL      E +  +
Sbjct: 1032 ADVLSLDKITPGSSHTAFVNNIADRYVWVNISANVRGRIDFFDLTEELEKLANVEEN--F 1089

Query: 497  HVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVY 554
             VG  ++ R+ +   A+ +++L+ +   T   +S  D +K+G ++   V  +   ++VV 
Sbjct: 1090 PVGSALRVRVKAVDVAAGKLDLTAVSTVTGKTLSLQD-IKVGYILPARVTKIHEASIVVQ 1148

Query: 555  VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLIN 613
            +  K      I  E LAD  + A   K   K G      ++ +D  +  L LSA+ S + 
Sbjct: 1149 INEK--LAAPIFLEQLADDYDMAKPNK--FKVGDVLRACVIDIDIPNKKLGLSARPSRVL 1204

Query: 614  SAQ---QLPS--DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
            S+    + P   D + +  + VV G++ ++   G +VR    +  +   S   D    D 
Sbjct: 1205 SSSLTVRDPEIKDKNQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSDEYIKDW 1264

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
               ++V Q V   I+    +     +SLK S                            N
Sbjct: 1265 KSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQG------------------------N 1300

Query: 729  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------- 781
             +E        +G ++  +V    DFGV +  +  ++V G     QLA   V+       
Sbjct: 1301 YTEPLEFGDLKVGQIVTARVRHVEDFGVFLVVDNSNNVSGLCHISQLADNAVDKDKIKDM 1360

Query: 782  --SGSVIQAAILDVAKAERLVDLSLK 805
                 +++A ++ +   +R +  +LK
Sbjct: 1361 YKKDDIVKAKVVKIEPKQRKISFTLK 1386


>gi|449675702|ref|XP_002169396.2| PREDICTED: rRNA biogenesis protein RRP5-like [Hydra magnipapillata]
          Length = 967

 Score =  285 bits (728), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 210/705 (29%), Positives = 354/705 (50%), Gaps = 62/705 (8%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLARAADA------LDPILDNEIEANEDNLLPTIFHVG 56
           + G V ++N+K+ +I LP GL G     D       +D I D E + N   L  ++  VG
Sbjct: 77  ILGCVRDINKKEYIIGLPNGLSGYVSFVDVQSFLQEVDYIEDEENQKNAI-LTSSLLSVG 135

Query: 57  QLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 116
           QLV  +V ++D DK   G RKI LS+  S +  G+    +   +VL   ++S+EDHG+++
Sbjct: 136 QLVPVVVKKIDSDKH--GYRKILLSIFPSDINGGVKANALHNNLVLWGMIQSMEDHGFVV 193

Query: 117 HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVT 174
            FG   F+GFLP       +  D+K G L+      +   +KV+ +S D + +   KC+ 
Sbjct: 194 SFGNKEFSGFLP------GTDSDLKVGQLMWFATTKVSSNKKVLTVSLDHNIIIKMKCLQ 247

Query: 175 KDLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 233
           K  K  S   L+PG +V  + +   EN G  L F     G+ D F  +   P  + +   
Sbjct: 248 KSAKFTS---LMPGHLVDFKTEKKSENMGFGLIF-----GSFDAFVDKRHVPL-DKEIVL 298

Query: 234 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP----PSHVKVGDIYDQSKVVRVDRGL 289
            +H+KV ARI+ +DP ++ +G+TL P L+  + P     +H  VG++  + +VVR D   
Sbjct: 299 IEHEKVEARIIHIDPNTKKIGVTLLPELI--KFPKNILSNHHSVGEVL-ECQVVRSDSSS 355

Query: 290 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 349
           GL + +     +T  YV IS   +    KL K +K G+  + R+LGF  ++   T  +K 
Sbjct: 356 GLYMKMSE---NTYGYVHISQTNDNRTTKLGKTFKVGTTHKCRVLGFSAMDSAYTLTMKK 412

Query: 350 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 409
           S  E    ++ D+KPGM++ G ++ ++ FG IV+    +KALCP  H+++  +  P KKF
Sbjct: 413 SILEKQFLSYEDLKPGMLISGTIVTLEDFGCIVKITDNIKALCPRLHLADINLKHPEKKF 472

Query: 410 KVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 467
             G +L FRVL  K   + + VTHKKTLV S   I+SSY       + HG++T ++  G 
Sbjct: 473 VEGKKLHFRVLRCKPSERSLIVTHKKTLVNSMFPIVSSYNVDVGT-VAHGFVTAVKSFGV 531

Query: 468 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FM 521
           FV FYN V+   P+SE  L PG    + +++GQV++C ++S   ++ ++ +S      F+
Sbjct: 532 FVAFYNNVKALLPKSESRLAPGATVETNFYIGQVLQCTVISVDASAEKMVVSLKHNDPFI 591

Query: 522 MKPTRVSEDDLVKLGSLVSG--------VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
            +   ++++  +++G +V G        +++V   N ++V +  K  S   I  E  A+ 
Sbjct: 592 QEKLTINQEKALEIGDVVHGHFEKLSGDIINVKLENNLLVNINQKHLSDFEIINEQWANI 651

Query: 574 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 633
           L+ A+          +F  L V + +      +     +   +++ S  + +    V  G
Sbjct: 652 LKTAS-------NDLQFQDLFVYEKDKKLQTFNTSLKQVIHGRKITS-FNELKVGMVFGG 703

Query: 634 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 678
            V +++  G FV     + G  P     D   +D S+ Y V QS+
Sbjct: 704 TVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDPSEMYSVHQSL 748



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 136/302 (45%), Gaps = 17/302 (5%)

Query: 424 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 483
           +K+I VT    L+K    ILS++  +   ++    +      G +++      G+   S+
Sbjct: 315 TKKIGVTLLPELIKFPKNILSNH-HSVGEVLECQVVRSDSSSGLYMKMSENTYGYVHISQ 373

Query: 484 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVS 540
              +   +    + VG   KCR++          L+    +++   +S +DL K G L+S
Sbjct: 374 TNDNRTTKLGKTFKVGTTHKCRVLGFSAMDSAYTLTMKKSILEKQFLSYEDL-KPGMLIS 432

Query: 541 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE 599
           G +  +     +V +      K   P  HLAD +L+H    K V      F  L    +E
Sbjct: 433 GTIVTLEDFGCIVKITDN--IKALCPRLHLADINLKHPE-KKFVEGKKLHFRVLRCKPSE 489

Query: 600 SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
            S L+++ K +L+NS   + S + ++   +V HG+V  +   G FV F   +    P+S+
Sbjct: 490 RS-LIVTHKKTLVNSMFPIVS-SYNVDVGTVAHGFVTAVKSFGVFVAFYNNVKALLPKSE 547

Query: 660 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 719
           +     A +   +Y+GQ ++  ++ V++   ++ +SLK       +  F+QE   + ++ 
Sbjct: 548 SRLAPGATVETNFYIGQVLQCTVISVDASAEKMVVSLKH------NDPFIQEKLTINQEK 601

Query: 720 AM 721
           A+
Sbjct: 602 AL 603



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 4/204 (1%)

Query: 1203 TFHVELSLRSSLDGMSSTNSS-DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
            TF V  + +  + G S+ +S+  L+       K     EDL P M++ G +  +   GC 
Sbjct: 385  TFKVGTTHKCRVLGFSAMDSAYTLTMKKSILEKQFLSYEDLKPGMLISGTIVTLEDFGCI 444

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            + ++  + A     +L+D  ++ PEK+F  GK +  RVL  +P  + + VT K   +   
Sbjct: 445  VKITDNIKALCPRLHLADINLKHPEKKFVEGKKLHFRVLRCKPSERSLIVTHK--KTLVN 502

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1381
            S   I +  N+ VG +  G +  V+S+G+F+   N N+  L   SE        +ET + 
Sbjct: 503  SMFPIVSSYNVDVGTVAHGFVTAVKSFGVFVAFYN-NVKALLPKSESRLAPGATVETNFY 561

Query: 1382 AGEKVKVKILKVDKEKRRISLGMK 1405
             G+ ++  ++ VD    ++ + +K
Sbjct: 562  IGQVLQCTVISVDASAEKMVVSLK 585



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 127/310 (40%), Gaps = 35/310 (11%)

Query: 396 HMSEFEIVKP--GKKFKVGA-ELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEAT 450
           H+S+FEI+        K  + +L F+ L V  K   +    T +K  +    ++S+ E  
Sbjct: 637 HLSDFEIINEQWANILKTASNDLQFQDLFVYEKDKKLQTFNTSLKQVIHGRKITSFNELK 696

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
             ++  G ++ +  +G FV    GV G  P   L  +   +PS MY V Q +  ++ +S 
Sbjct: 697 VGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDPSEMYSVHQSLIVKVKTSA 756

Query: 511 PAS------RRI--------NLSFMMKPTRVSEDDLVKLGSLVSG--------VVDVVTP 548
                    R +        N  F+ +   ++++  +++G +V G        +++V   
Sbjct: 757 KVCLLGKNVRSVFGSLGIEHNDPFIQEKLTINQEKALEIGDVVHGHFEKLSGDIINVKLE 816

Query: 549 NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 608
           N ++V +  K  S   I  E  A+ L+ A+          +F  L V + +      +  
Sbjct: 817 NNLLVNINQKHLSDFEIINEQWANILKTAS-------NDLQFQDLFVYEKDKKLQTFNTS 869

Query: 609 YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
              +   +++ S  + +    V  G V +++  G FV     + G  P     D   +D 
Sbjct: 870 LKQVIHGRKITS-FNELKVGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDP 928

Query: 669 SKTYYVGQSV 678
           S+ Y V QS+
Sbjct: 929 SEMYSVHQSL 938



 Score = 45.1 bits (105), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 14/137 (10%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLL----SNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
            +  G+V  V S G F+      + K LL    S L+ G   + E  F IG+++   V+SV
Sbjct: 518  VAHGFVTAVKSFGVFVAFYN--NVKALLPKSESRLAPG--ATVETNFYIGQVLQCTVISV 573

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
            +  ++++ V+LK +D     +  IN    L +GD+V G  +++    + + +EN  LV  
Sbjct: 574  DASAEKMVVSLKHNDPFIQEKLTINQEKALEIGDVVHGHFEKLSGDIINVKLENNLLV-- 631

Query: 1363 CHVSELSEDHVDNIETI 1379
                 +++ H+ + E I
Sbjct: 632  ----NINQKHLSDFEII 644



 Score = 41.6 bits (96), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            G+ +    +L   M+  G V +V S G F+ +S  ++  V   +L+D Y+  P + + + 
Sbjct: 686  GRKITSFNELKVGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDPSEMYSVH 745

Query: 1293 KLVAGRVLS---VEPLSKRVE-----VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1344
            + +  +V +   V  L K V      + ++ +D     +  IN    L +GD+V G  ++
Sbjct: 746  QSLIVKVKTSAKVCLLGKNVRSVFGSLGIEHNDPFIQEKLTINQEKALEIGDVVHGHFEK 805

Query: 1345 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
            +    + + +EN  LV       +++ H+ + E I
Sbjct: 806  LSGDIINVKLENNLLV------NINQKHLSDFEII 834


>gi|189199792|ref|XP_001936233.1| rRNA biogenesis protein RRP5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983332|gb|EDU48820.1| rRNA biogenesis protein RRP5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1760

 Score =  283 bits (725), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 243/903 (26%), Positives = 430/903 (47%), Gaps = 127/903 (14%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARI 987
            G+L    I  +K  +L ++      GRI ++E+ D   ++ +  N  ++FK+ + V AR+
Sbjct: 936  GTLTTVRIKTVKSTQLNVELADNVQGRISVSELFDGWDSIPDKKNPTAHFKMNEKVQARV 995

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV------SIGQRVTGYVYK 1039
            + + +  + +  FL   S       V E+ +    +  E DV      + G   T +V  
Sbjct: 996  LGRHDARNFR--FLPITSRSNHKTPVYEMTANTDKIKREADVLSLDKITPGSSHTAFVNN 1053

Query: 1040 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1099
            + + +  + IS +++           P +L            VTG  +S+          
Sbjct: 1054 IADRYVWVNISANVRG----------PGKLD-----LTAVSTVTGKTMSL---------- 1088

Query: 1100 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1159
                QD                 I  G I+  R++KI      +VVQI   L   +   +
Sbjct: 1089 ----QD-----------------IKVGYILPARVTKIHEA--SIVVQINEKLAAPIFLEQ 1125

Query: 1160 LKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1219
            L +                    YD  +  K KV ++ R       +++ + +   G+S+
Sbjct: 1126 LAD-------------------DYDMAKPNKFKVGDVLRVCV----IDIDIPNKKLGLSA 1162

Query: 1220 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1279
              S  LS+ +      ++    L  + +V+G++K+V S G ++ L   ++A V +S+LSD
Sbjct: 1163 RPSRVLSSSLTVRDPEIKDKSQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSD 1222

Query: 1280 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1339
             Y++  +  F + +LV G+++S +   +  +++LKTS  +  + +E    S+L VG IV 
Sbjct: 1223 EYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQ-GNYTEPLEFSDLKVGQIVT 1281

Query: 1340 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDN--IETIYRAGEKVKVKILKVDKE 1396
             +++ VE +G+F+ ++N+ N+ GLCH+S+L+++ VD   I+ +Y+  + VK KI+K++ +
Sbjct: 1282 AKVRHVEDFGVFLVVDNSSNVSGLCHISQLADNAVDKDKIKDMYKKDDVVKAKIVKIEPK 1341

Query: 1397 KRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV-----AVQDMD 1451
            +R+IS  +K S  K D ++  M    E DE  EE  S     L E+  +     A  D D
Sbjct: 1342 QRKISFTLKYSQIKGDGEDEDMEDASE-DELAEESDSDGGIELDEDVDMRSVKSAESDND 1400

Query: 1452 MESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK 1511
            +E  D         +     P               G+S + G      T+D    +HA 
Sbjct: 1401 VELADADEAEDDSDDEDIQTPA-------------QGLSTS-GFDWTGATLDADQQKHAA 1446

Query: 1512 KKEKEE-------REQEIRAAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFM 1562
              + E        + ++    E+R  + DA  P++  ++ERL+   PNS+ +W++YM F 
Sbjct: 1447 DSDSENDTPKKKKKSKKASIKEDRTGDLDAYGPQSVADYERLLLGQPNSAEMWVRYMVFQ 1506

Query: 1563 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1622
              + +VEKAR IA RAL TIN REE EKL++W A  +LEN++ +  ++ +  V + A Q 
Sbjct: 1507 RELNEVEKARQIARRALATINPREEKEKLDVWTALLHLENDFAS--DDTIEAVLKEACQN 1564

Query: 1623 CDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQQQ----E 1676
             D +++H   + +Y  + +   AD L   M+K   F    K WL     L+   Q     
Sbjct: 1565 NDSREMHERTIKIYISSGKLDKADSLYQSMMKNKSFTQDPKFWLSYAAFLMDVLQPPSAS 1624

Query: 1677 GVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSI 1734
              +A++QRA  S+  ++H     + A LEFK  NG A+RGR++FEG++  + K+ D+W +
Sbjct: 1625 RARALLQRATQSVASNQHRYLTQKFAALEFKSPNGDAERGRTIFEGLIDTFAKKGDVWDM 1684

Query: 1735 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794
            YL  E   GD D +R LFER   +     +++ +FKK+ E+E  VG ++ +E VK    +
Sbjct: 1685 YLMLEQSHGDEDKVRDLFERMTKVG-KSSRVRSVFKKWAEWENGVGNKKGVERVKTLEEQ 1743

Query: 1795 YVE 1797
            + E
Sbjct: 1744 WRE 1746



 Score =  187 bits (476), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 197/748 (26%), Positives = 339/748 (45%), Gaps = 62/748 (8%)

Query: 5   GVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEAN-------------EDNL 48
           G + +++ +DLV+ LP  L G   L   +D L+  L+  ++               ED  
Sbjct: 158 GQIIDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKDEGAEKKEGSEDGDFEDVD 217

Query: 49  LPTIFHVGQLV-SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
           L  +F VGQ + +CI    +D+ +   ++++ LS+   L+ KGL+   +    ++ A V 
Sbjct: 218 LKDMFSVGQYIRACITATNEDNAR--ARKRLELSIDPKLVNKGLTKRKIPVNSMVQASVV 275

Query: 108 SIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSS 164
           S EDHG ++  GL   +  GFLP+  L        V+ G +   +V  I+   ++V LS+
Sbjct: 276 SNEDHGLVMDLGLGDANLKGFLPKGELGPKIQHAKVQEGAVFMCLVTGINSDGRIVKLSA 335

Query: 165 DPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           D  T +  +TK     +  +ID+ +PG  V   V     + ++   L     T D +H  
Sbjct: 336 D-HTKAGNITKGNTLTEAPTIDVFLPGTAVDILVADTTSSTLVGKILGLIDATADAYHSG 394

Query: 222 NTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL----------HNRAPP- 268
            T    +    Y    KV ARILF  P S  R VG++L  +++            R PP 
Sbjct: 395 ATEKAADVSQKYKIGSKVKARILFTCPNSEPRKVGVSLLDHVVSLSTRMSGKPKERKPPI 454

Query: 269 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGS 327
             + +  I + +KVV+V    G   D+    V   A+++ +SD   + + +   ++K  S
Sbjct: 455 DLLPISTIVESAKVVKVAPAQGAFFDLGIKDVVGFAHISRLSDDKVDVISEESGQFKLDS 514

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IV 382
             + RI+G+  L+G+    L+    +       D++ G VVKGKV  +  D  GA   +V
Sbjct: 515 THKARIIGYNALDGIFQLSLEQKVLDQPFLRIEDIQAGQVVKGKVHKLIADKTGAAAVLV 574

Query: 383 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKL 440
               G+  L P  H+++  +  P +KF+ G  +  RVL  +  R  I +T KK+LV S  
Sbjct: 575 HLADGITGLVPEAHLADVRLQHPERKFREGVPVTARVLYTEPARHQIQLTLKKSLVNSDT 634

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
              ++Y   ++ L   G +T + ++G  VRFY  V+ + P +E+      + +  +  GQ
Sbjct: 635 KPWTNYEMLSEGLTGPGILTSVRRNGATVRFYGDVKAWLPAAEMSEAFINDATRHFTNGQ 694

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL-----VSGVVDVVTPNAVVVYV 555
           VVK RI+ S+ A  R  L     P  V  +      +L     V G V   + ++  +  
Sbjct: 695 VVKVRII-SVDAKERQLLVSCKDPAAVDNNREAAFNALNPSDIVKGTVLEKSDDSATLD- 752

Query: 556 IAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSL 611
           I  G  KG +   HL D    +  + MK  I+ G   ++L+VL    ++ +  +S K SL
Sbjct: 753 IGNGV-KGILRIGHLTDGSAKKDISTMKK-IRIGGTLEELVVLTKHGKTRSATVSNKPSL 810

Query: 612 INSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 669
              AQ  +L      +     VHG+V  I+    FV     ++G   +S+  +   ++ +
Sbjct: 811 RKDAQASKLAISIEDLQAGETVHGFVRGILPDKIFVELGNGISGVLFKSQLPEEMISEPN 870

Query: 670 KTYYVGQSVRSNILDVNSETGRITLSLK 697
                 QS+ + +  V+   G   LS+K
Sbjct: 871 FGLRKDQSISARVTHVDVGKGFFWLSMK 898



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 19/179 (10%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSK-----GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            +IED+    +V+G V  + +         + L+  +   V  ++L+D  ++ PE++F  G
Sbjct: 545  RIEDIQAGQVVKGKVHKLIADKTGAAAVLVHLADGITGLVPEAHLADVRLQHPERKFREG 604

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKR----VE 1346
              V  RVL  EP   ++++TLK S  +S T   +    LS    G  ++  ++R    V 
Sbjct: 605  VPVTARVLYTEPARHQIQLTLKKSLVNSDTKPWTNYEMLSEGLTGPGILTSVRRNGATVR 664

Query: 1347 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             YG        ++      +E+SE  +++    +  G+ VKV+I+ VD ++R++ +  K
Sbjct: 665  FYG--------DVKAWLPAAEMSEAFINDATRHFTNGQVVKVRIISVDAKERQLLVSCK 715



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 158/772 (20%), Positives = 312/772 (40%), Gaps = 111/772 (14%)

Query: 662  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 721
            D +  DL   + VGQ +R+ I   N +  R    L+ S     D   + +  L + KI  
Sbjct: 212  DFEDVDLKDMFSVGQYIRACITATNEDNARARKRLELSI----DPKLVNKG-LTKRKIP- 265

Query: 722  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAG--- 777
                              + S+++  V  + D G+V+      +++ GF+   +L     
Sbjct: 266  ------------------VNSMVQASVVSNEDHGLVMDLGLGDANLKGFLPKGELGPKIQ 307

Query: 778  -ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK-DLG 835
             A V+ G+V    +  +    R+V LS          + N+  +A         +  D+ 
Sbjct: 308  HAKVQEGAVFMCLVTGINSDGRIVKLSADHTKAGNITKGNTLTEAPTIDVFLPGTAVDIL 367

Query: 836  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP 895
            V  T ++ + + K   L+ +  +  HS      +D +      +++  G  V A ++   
Sbjct: 368  VADTTSSTL-VGKILGLIDATADAYHSGATEKAADVS------QKYKIGSKVKARILFTC 420

Query: 896  SSSTAGRL--LLLLKAISETETSSSKRAKKKSSYD---VGSLVQ-AEITEIKP-----LE 944
             +S   ++   LL   +S +   S K  ++K   D   + ++V+ A++ ++ P      +
Sbjct: 421  PNSEPRKVGVSLLDHVVSLSTRMSGKPKERKPPIDLLPISTIVESAKVVKVAPAQGAFFD 480

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1004
            L +K  +GF    HI+ ++DDK +V+      FK+  T  ARII   N  D     +++L
Sbjct: 481  LGIKDVVGF---AHISRLSDDKVDVISEESGQFKLDSTHKARIIG-YNALDG----IFQL 532

Query: 1005 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK-VDNEWALLTISRHLKAQL--FILD 1061
            S++  +L       +      D+  GQ V G V+K + ++     +  HL   +   + +
Sbjct: 533  SLEQKVL------DQPFLRIEDIQAGQVVKGKVHKLIADKTGAAAVLVHLADGITGLVPE 586

Query: 1062 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1121
            +      LQ  +R+F  G  VT  VL     +  ++L L+  +  ++  T   +N  M  
Sbjct: 587  AHLADVRLQHPERKFREGVPVTARVLYTEPARHQIQLTLK--KSLVNSDTKPWTNYEM-- 642

Query: 1122 FIHEGDIVGGRISKILSGV--GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
             + EG    G    IL+ V   G  V+    +   +   E+    ++           D 
Sbjct: 643  -LSEGLTGPG----ILTSVRRNGATVRFYGDVKAWLPAAEMSEAFIN-----------DA 686

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
               +  GQ VK +++ +    R        L S  D  +  N+ + + +           
Sbjct: 687  TRHFTNGQVVKVRIISVDAKERQL------LVSCKDPAAVDNNREAAFNA---------- 730

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE---SPEKEFPI-GKLV 1295
              L+P+ IV+G V   +     + +   +   + + +L+DG  +   S  K+  I G L 
Sbjct: 731  --LNPSDIVKGTVLEKSDDSATLDIGNGVKGILRIGHLTDGSAKKDISTMKKIRIGGTLE 788

Query: 1296 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITI 1354
               VL+    ++   V+ K S  + A  S++  ++ +L  G+ V G ++ +    +F+ +
Sbjct: 789  ELVVLTKHGKTRSATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGILPDKIFVEL 848

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
             N  + G+   S+L E+ +       R  + +  ++  VD  K    L MK+
Sbjct: 849  GN-GISGVLFKSQLPEEMISEPNFGLRKDQSISARVTHVDVGKGFFWLSMKA 899



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 123/286 (43%), Gaps = 33/286 (11%)

Query: 350  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE-FEIVKPGKK 408
            S   G   +  D+K G ++  +V  +     +VQ    + A   L  +++ +++ KP K 
Sbjct: 1079 STVTGKTMSLQDIKVGYILPARVTKIHEASIVVQINEKLAAPIFLEQLADDYDMAKPNK- 1137

Query: 409  FKVGAELVFRV----LGVKSKRITVTHKKTLV-KSKLAILSSYAEATDRLITH----GWI 459
            FKVG   V RV    + + +K++ ++ + + V  S L +     +   +L  H    G+I
Sbjct: 1138 FKVGD--VLRVCVIDIDIPNKKLGLSARPSRVLSSSLTVRDPEIKDKSQLKVHQVVRGFI 1195

Query: 460  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
              +  +G +VR    V+ +   S L  +   +  S +HV Q+V  +I+S+    R   +S
Sbjct: 1196 KHVASNGVYVRLGPHVEAYVRVSHLSDEYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMS 1255

Query: 520  F--------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 571
                       +P   S+   +K+G +V+  V  V    V + V       G      LA
Sbjct: 1256 LKTSVIQGNYTEPLEFSD---LKVGQIVTAKVRHVEDFGVFLVVDNSSNVSGLCHISQLA 1312

Query: 572  DHLEHATVMKSVIKPGYEFD-----QLLVLDNESSNLLLSAKYSLI 612
            D+     V K  IK  Y+ D     +++ ++ +   +  + KYS I
Sbjct: 1313 DN----AVDKDKIKDMYKKDDVVKAKIVKIEPKQRKISFTLKYSQI 1354



 Score = 43.9 bits (102), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 80/225 (35%), Gaps = 33/225 (14%)

Query: 621  DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 680
            D S +  + VV G++ ++   G +VR    +  +   S   D    D    ++V Q V  
Sbjct: 1181 DKSQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSDEYIKDWKSAFHVDQLVTG 1240

Query: 681  NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 740
             I+    +     +SLK S                            N +E        +
Sbjct: 1241 KIISNKEDQRNPQMSLKTSVIQG------------------------NYTEPLEFSDLKV 1276

Query: 741  GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE---------SGSVIQAAIL 791
            G ++  KV    DFGV +  +  S+V G     QLA   V+            V++A I+
Sbjct: 1277 GQIVTAKVRHVEDFGVFLVVDNSSNVSGLCHISQLADNAVDKDKIKDMYKKDDVVKAKIV 1336

Query: 792  DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 836
             +   +R +  +LK   I    E      A + +   E+  D G+
Sbjct: 1337 KIEPKQRKISFTLKYSQIKGDGEDEDMEDASEDELAEESDSDGGI 1381


>gi|47220309|emb|CAG03343.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2384

 Score =  281 bits (720), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 190/571 (33%), Positives = 310/571 (54%), Gaps = 64/571 (11%)

Query: 1258 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS- 1316
            +G  + L       V +++L+D Y  +P   +   ++V  R   ++ ++ + +++L+ S 
Sbjct: 1845 RGLLVQLPFGSMGSVAVTDLADAYRPNPLNAYRKNQIV--RCFLLQKINGKWQLSLRPSR 1902

Query: 1317 ----DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG----------L 1362
                 ++     EI  +S L  G I+ G +  V   G+FI + ++++ G           
Sbjct: 1903 LNPEKAKPVKDLEILAVSELKEGQIIRGYVTSVGKCGIFIRL-SSSITGRAELQKSTKYF 1961

Query: 1363 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS-SYFKND--ADNLQMS 1419
            C    +  DH+ N       G  +  KI+ +D E+  +SL + S    K+D   ++L + 
Sbjct: 1962 CSNHSVLCDHLPN-------GTLITSKIISIDSEEELVSLSLLSEDTGKSDILPESLGLP 2014

Query: 1420 SEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLD 1479
                  E        N+  L E+   A       S  G S +  Q+ S  S         
Sbjct: 2015 LRLIGKEKKCNTEKKNKRKLSESEQAA------HSSAGPSRL--QVASGFS--------- 2057

Query: 1480 DEQPDMDNGISQNQGHT---DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-- 1534
                  D G+S  +  T   +   + +E+ N  +KKK + E EQ+ +AAE+ L++++   
Sbjct: 2058 -----WDAGLSSLKPATAMQESESSDEEEQNTSSKKKSRRELEQDKKAAEKALIQREVEL 2112

Query: 1535 ------PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1588
                  P     FERL+ +SPNSS +W++YMA  L    +E+AR++AERAL+TI+ REE 
Sbjct: 2113 MDPSLQPEDAAAFERLLLASPNSSLLWLQYMAHHLQATQIEQARTVAERALKTISFREEQ 2172

Query: 1589 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1648
            EKLN+WVA  NLEN YG   EE++ KVF+RA Q+C+P  V+  L  +Y ++E+ + A+ L
Sbjct: 2173 EKLNVWVALLNLENMYGT--EESLKKVFERAQQFCEPMPVYQQLADIYTKSEKIREAESL 2230

Query: 1649 LYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1707
               M+K+F+    VWL     LL++ Q +   A++QRAL S+P  + +  I++ A LEF+
Sbjct: 2231 YKTMVKRFRQHKVVWLNYGTFLLQRGQSDAANALLQRALKSMPPKESVDMIAKFAQLEFR 2290

Query: 1708 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1767
             G A+RGR+MF+ +L+ YPKRTDLWS+++D  ++ G    +R +F+R I LS+  KK+KF
Sbjct: 2291 YGDAERGRTMFDKVLTSYPKRTDLWSVFIDLMVKHGSQKDVREIFDRVIHLSVSVKKIKF 2350

Query: 1768 LFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             FK+YLEYEK  G  + I+ VK+KA+E+VES
Sbjct: 2351 FFKRYLEYEKKHGTPQSIQAVKEKAIEFVES 2381



 Score =  246 bits (629), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 290/561 (51%), Gaps = 50/561 (8%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEAN---EDNLLPTIFH 54
           M L G V EV + ++ + LP GL+G   +    ++   +L  +++++   E   LP +F 
Sbjct: 8   MLLLGAVKEVADFEVTVSLPCGLQGYLSIKNICESYTKVLSKQLDSSDIEEIYSLPHLFC 67

Query: 55  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 114
            G ++ C+V +LD  K   G   I LS+   L+ K L+  +++ GMVL+  V S+EDHGY
Sbjct: 68  PGMVLRCLVAKLDTSKG--GNLSIQLSINPKLVNKALTTSSLKAGMVLSGCVDSVEDHGY 125

Query: 115 ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 174
           I+  G+     FLPR   A NS  ++K G  +   +  +    +VV LS      S+   
Sbjct: 126 IVDIGIKGTNAFLPRKERA-NSQEELKVGQYVTSALEEVKNDGRVVRLSVSRLNSSQTCA 184

Query: 175 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND-- 232
           +  +G ++  L+PG++V+  ++ + ++G++L FL+ FTG VD  H++    ++  + D  
Sbjct: 185 QSSQGWNLTNLLPGLLVNATIKKVTKHGLILDFLSSFTGQVDFLHMEPEQASSYKEGDQV 244

Query: 233 ----------YNQHK-------------KVNARILFVDPTSRAVGLTLNPYLLHNRA--- 266
                     ++  K             +V AR+L+V+P++R V L+L  +L+ +     
Sbjct: 245 KLSLLLLIPVFSDFKLECSMKPCSAPPTQVRARVLYVEPSTRLVALSLRSFLVQSETRLD 304

Query: 267 --PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK-- 322
             PP   + G++    K+  V    G +L++P     T A+   + + E + +  E +  
Sbjct: 305 LRPPGGDRAGEVVKSCKMTVVHHMSGAVLELPD---KTTAFAHKNHLKEPKEQLNENRLL 361

Query: 323 -YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 381
              E SC   RIL F  ++ +    L+ S  +   F + D++ G +V+G V  + + G +
Sbjct: 362 AMPEHSC---RILDFSLMDNIHFVTLRKSMIDKPFFRYHDLQAGQIVEGTVSVLLTSGMV 418

Query: 382 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSK 439
           V     VK L P  H+S+  +  P KK+  G ++  RVL V+  SK++ +T KK LV+S 
Sbjct: 419 VHLSDHVKGLVPRTHLSDIILKNPEKKYTEGMKIKCRVLSVEPESKKLYLTRKKALVESS 478

Query: 440 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 499
           L +  ++A+A    ++HG+I  I+  GC VRFYN V+G  P SEL  +P   P  +++VG
Sbjct: 479 LPLFRTFADARPGRVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISRPEDVFYVG 538

Query: 500 QVVKCRIMSSIPASRRINLSF 520
           QV+K +++       ++ LSF
Sbjct: 539 QVLKTKVLQCDRQKAKMLLSF 559



 Score =  229 bits (585), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 249/999 (24%), Positives = 443/999 (44%), Gaps = 124/999 (12%)

Query: 356  VFTHSDVKPGMVVKGKVIAVDSFG-----AIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 410
            +   S++K G +++G V +V   G      +V     VK L P  H+S+  +  P KK+ 
Sbjct: 1091 ILAVSELKEGQIIRGYVTSVGKCGIFISGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYT 1150

Query: 411  VGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 468
             G ++  RVL V+  SK++ +T KK LV+S L +  ++A+A    ++HG+I  I+  GC 
Sbjct: 1151 EGMKIKCRVLSVEPESKKLYLTRKKALVESSLPLFRTFADARPGRVSHGYIVCIKDFGCI 1210

Query: 469  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 528
            VRFYN V+G  P SEL  +P   P  +++VGQ    R M    A       F  +  +  
Sbjct: 1211 VRFYNDVKGLVPLSELSSEPISRPEDVFYVGQ----RAMEG-AAEEASAPEFDCQVGQKL 1265

Query: 529  EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
            E  ++K     SG+   + P+ +          + T+PT HL+DH+ +  ++   ++ G 
Sbjct: 1266 EAKVLK--KTASGLEVAILPDEI----------RATLPTMHLSDHMSNCPLLWECLQEGD 1313

Query: 589  EFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVR 646
                L+ ++    N+ L+ K ++  S  +  +  D S I   + + G+V NI+  G FV 
Sbjct: 1314 NISNLICINRGQQNIALTKKPTIRWSLDEGVVAKDFSEIKVGTQLFGWVKNIMPYGVFVE 1373

Query: 647  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            F   L G AP+S   D   +D + ++ +GQ+V + + +++ E  R  ++LK S   S   
Sbjct: 1374 FPYGLVGLAPKSAMADRFISDTTASFQLGQTVMAKVTNLDEEKRRFLVTLKISEVISPAG 1433

Query: 707  SFMQE--HFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
              +    + L E K+          SEL + + G  +G  ++  V+ + D G     ++ 
Sbjct: 1434 DVLTRLVNGLQERKVMTEMLLARGASELHQQLAGLSVGQRLKLTVNTTADNGATFVSDDL 1493

Query: 764  SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 823
                   T   + G  +  G  + A IL +      V +S+ +            R  +K
Sbjct: 1494 HGATVQATRQHVTGVNLVPGQKVTAVILHIDLLSTHVHVSILS------------RLLEK 1541

Query: 824  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN 883
            +K   E SK         A V+ + +++ V+SL          + S  N       Q L 
Sbjct: 1542 RKPLNEGSK-------YTATVQHISQDFAVISLDNTAQLTVIQTSSHLNHMPLSGTQELK 1594

Query: 884  -GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS--YDVGSLVQAEITEI 940
             G S+   V+        G  L+        E SS KR   K+S  Y  G +VQA++  +
Sbjct: 1595 LGMSLTVEVIEASCQEAQGLPLV------SWERSSPKRQPTKTSMGYRFGEIVQAKVKSV 1648

Query: 941  KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTVTARII----AKSNK- 993
            KP+ +++    G  G +H++EV D + +V +     F  K G TVTAR+I    A S++ 
Sbjct: 1649 KPIGIQVTLEDGTAGSVHVSEVIDAR-DVCQGYLPTFSVKAGSTVTARVIGGREASSHRF 1707

Query: 994  -----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEE--CDVSIGQRVTGYVYKVDNEWAL 1046
                 P+ K + L EL++  S L  S     +  +E      +G+ +T +V K   +  +
Sbjct: 1708 LPFSHPNFKYTIL-ELTLISSKLDKSTELKPVSTKEHLNSYKVGEEITCFVLKFHPDKKV 1766

Query: 1047 LTISRH--LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1104
            L ++ H  +   + +L    +P      +  F +G+AV   V+  + + +   L L    
Sbjct: 1767 LEVTTHPGVIGTVELLAMITDPKLATHPENVFKMGQAVYAKVVEASTKPQRFTLSL---- 1822

Query: 1105 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1164
             G+             T + EG +  G +      + GL+VQ+         F  + ++ 
Sbjct: 1823 TGV-------------TQLEEGAVTLGMVIDS-DPLRGLLVQLP--------FGSMGSVA 1860

Query: 1165 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1224
            V+D    Y   + +PL+ Y + Q V+C +L+    + G +  +LSLR           S 
Sbjct: 1861 VTDLADAY---RPNPLNAYRKNQIVRCFLLQ---KINGKW--QLSLR----------PSR 1902

Query: 1225 LSTDVDTPGKHLE--KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1282
            L+ +   P K LE   + +L    I++GYV +V   G FI LS  +  +  L   +  + 
Sbjct: 1903 LNPEKAKPVKDLEILAVSELKEGQIIRGYVTSVGKCGIFIRLSSSITGRAELQKSTKYFC 1962

Query: 1283 ESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
             +        P G L+  +++S++   + V ++L + D+
Sbjct: 1963 SNHSVLCDHLPNGTLITSKIISIDSEEELVSLSLLSEDT 2001



 Score =  156 bits (395), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 223/937 (23%), Positives = 392/937 (41%), Gaps = 176/937 (18%)

Query: 533  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
            ++ G +V G V V+  + +VV++    + KG +P  HL+D      ++K+  K   E  +
Sbjct: 399  LQAGQIVEGTVSVLLTSGMVVHL--SDHVKGLVPRTHLSD-----IILKNPEKKYTEGMK 451

Query: 593  L----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 648
            +    L ++ ES  L L+ K +L+ S+  L    +   P  V HGY+  I + GC VRF 
Sbjct: 452  IKCRVLSVEPESKKLYLTRKKALVESSLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFY 511

Query: 649  GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--------- 699
              + G  P S+      +     +YVGQ +++ +L  + +  ++ LS K++         
Sbjct: 512  NDVKGLVPLSELSSEPISRPEDVFYVGQVLKTKVLQCDRQKAKMLLSFKRAMEGAAEEAS 571

Query: 700  -----C----------CSSTDASFM---------------QEHFL--------------- 714
                 C           S T ASF                +  FL               
Sbjct: 572  APEFDCQVGQAMADRFISDTTASFQLGQTVMAKVTNLDEEKRRFLVTLKISEVISPAGDV 631

Query: 715  -------LEEKIAMLQSSKHNG-SEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
                   L+E+ AM +     G SEL + + G  +G  ++  V+ + D G     ++   
Sbjct: 632  LTRLVNGLQERKAMTEMLLARGASELHQQLAGLSVGQRLKLTVNTTADNGATFVSDDLHG 691

Query: 766  VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 825
                 T   + G  +  G  + A IL +      V +S+ +            R  +K+K
Sbjct: 692  ATVQATRQHVTGVNLVPGQKVTAVILHIDLLSTHVHVSILS------------RLLEKRK 739

Query: 826  RKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN-G 884
               E SK         A V+ + +++ V+SL          + S  N       Q L  G
Sbjct: 740  PLNEGSK-------YTATVQHISQDFAVISLDNTAQLTVIQTSSHLNHMPLSGTQELKLG 792

Query: 885  QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS--YDVGSLVQAEITEIKP 942
             S+   V+        G  L+        E SS KR   K+S  Y  G +VQA++  +KP
Sbjct: 793  MSLTVEVIEASCQEAQGLPLV------SWERSSPKRQPTKTSMGYRFGEIVQAKVKSVKP 846

Query: 943  LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTVTARIIA---KSNKPDMK 997
            + +++    G  G +H++EV D + +V +     F  K G TVTAR+I     S+   + 
Sbjct: 847  IGIQVTLEDGTAGSVHVSEVIDAR-DVCQGYLPTFSVKAGSTVTARVIGGREASSHSKLD 905

Query: 998  KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH--LKA 1055
            KS      +KP + T   + S          +G+ +T +V K   +  +L ++ H  +  
Sbjct: 906  KS----TELKP-VSTKEHLNS--------YKVGEEITCFVLKFHPDKKVLEVTTHPGVIG 952

Query: 1056 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1115
             + +L    +P      +  F +G+AV   V+  + + +   L L     G+        
Sbjct: 953  TVELLAMITDPKLATHPENVFKMGQAVYAKVVEASTKPQRFTLSL----TGV-------- 1000

Query: 1116 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1175
                 T + EG +  G +      + GL+VQ+         F  + ++ V+D    Y   
Sbjct: 1001 -----TQLEEGAVTLGMVIDS-DPLRGLLVQLP--------FGSMGSVAVTDLADAY--- 1043

Query: 1176 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1235
            + +PL+ Y + Q V+C +L+    + G +  +LSLR           S L+ +   P K 
Sbjct: 1044 RPNPLNAYRKNQIVRCFLLQ---KINGKW--QLSLR----------PSRLNPEKAKPVKD 1088

Query: 1236 LE--KIEDLSPNMIVQGYVKNVTSKGCFI-----MLSRKLDAKVLLSNLSDGYVESPEKE 1288
            LE   + +L    I++GYV +V   G FI      LS  +   V  ++LSD  +++PEK+
Sbjct: 1089 LEILAVSELKEGQIIRGYVTSVGKCGIFISGMVVHLSDHVKGLVPRTHLSDIILKNPEKK 1148

Query: 1289 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1348
            +  G  +  RVLSVEP SK++ +T K +   + S       ++   G +  G I  ++ +
Sbjct: 1149 YTEGMKIKCRVLSVEPESKKLYLTRKKALVES-SLPLFRTFADARPGRVSHGYIVCIKDF 1207

Query: 1349 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1385
            G  +   N ++ GL  +SELS + +   E ++  G++
Sbjct: 1208 GCIVRFYN-DVKGLVPLSELSSEPISRPEDVFYVGQR 1243



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 2/170 (1%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            +  DL    IV+G V  + + G  + LS  +   V  ++LSD  +++PEK++  G  +  
Sbjct: 395  RYHDLQAGQIVEGTVSVLLTSGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYTEGMKIKC 454

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            RVLSVEP SK++ +T K +   + S       ++   G +  G I  ++ +G  +   N 
Sbjct: 455  RVLSVEPESKKLYLTRKKALVES-SLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFYN- 512

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            ++ GL  +SELS + +   E ++  G+ +K K+L+ D++K ++ L  K +
Sbjct: 513  DVKGLVPLSELSSEPISRPEDVFYVGQVLKTKVLQCDRQKAKMLLSFKRA 562



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 108/510 (21%), Positives = 182/510 (35%), Gaps = 135/510 (26%)

Query: 977  FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1036
            FK+GQ V A+++              E S KP   T+S  G   L E      G    G 
Sbjct: 973  FKMGQAVYAKVV--------------EASTKPQRFTLSLTGVTQLEE------GAVTLGM 1012

Query: 1037 VYKVDNEWALLT---ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1093
            V   D    LL            +  L  AY P+ L  +++   +          + K  
Sbjct: 1013 VIDSDPLRGLLVQLPFGSMGSVAVTDLADAYRPNPLNAYRKNQIV------RCFLLQKIN 1066

Query: 1094 KLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSG---VGGLVVQIG 1148
               +L LRP +    +K   + +  +     + EG I+ G ++ +      + G+VV + 
Sbjct: 1067 GKWQLSLRPSRLN-PEKAKPVKDLEILAVSELKEGQIIRGYVTSVGKCGIFISGMVVHLS 1125

Query: 1149 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1208
             H+ G V  T L +I + +P   Y EG             +KC+VL +    +  +   L
Sbjct: 1126 DHVKGLVPRTHLSDIILKNPEKKYTEGMK-----------IKCRVLSVEPESKKLY---L 1171

Query: 1209 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
            + + +L              V++         D  P  +  GY+  +   GC +     +
Sbjct: 1172 TRKKAL--------------VESSLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFYNDV 1217

Query: 1269 DAKVLLSNLS------------------DGYVE---SPEKEFPIGKLVAGRVLS------ 1301
               V LS LS                  +G  E   +PE +  +G+ +  +VL       
Sbjct: 1218 KGLVPLSELSSEPISRPEDVFYVGQRAMEGAAEEASAPEFDCQVGQKLEAKVLKKTASGL 1277

Query: 1302 -VEPLSKRVEVTLKT---SDSRTASQ------SEINNLSNL------------------- 1332
             V  L   +  TL T   SD  +          E +N+SNL                   
Sbjct: 1278 EVAILPDEIRATLPTMHLSDHMSNCPLLWECLQEGDNISNLICINRGQQNIALTKKPTIR 1337

Query: 1333 ---------------HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
                            VG  + G +K +  YG+F+      LVGL   S +++  + +  
Sbjct: 1338 WSLDEGVVAKDFSEIKVGTQLFGWVKNIMPYGVFVEFPY-GLVGLAPKSAMADRFISDTT 1396

Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              ++ G+ V  K+  +D+EKRR  + +K S
Sbjct: 1397 ASFQLGQTVMAKVTNLDEEKRRFLVTLKIS 1426


>gi|196015125|ref|XP_002117420.1| hypothetical protein TRIADDRAFT_61471 [Trichoplax adhaerens]
 gi|190579949|gb|EDV20036.1| hypothetical protein TRIADDRAFT_61471 [Trichoplax adhaerens]
          Length = 927

 Score =  280 bits (717), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 192/644 (29%), Positives = 340/644 (52%), Gaps = 45/644 (6%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE----DNL----LPT 51
           + G+V E+N  D+ + LPG L G   + + +  +  +L  ++++ E    D +    L +
Sbjct: 83  VLGIVKEINPVDITVSLPGLLTGYIHITQMSSQMTQLLTRQLKSTELDGEDGVTQLDLNS 142

Query: 52  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 111
            F +G ++ C+V +++  K +   ++I L++   +L        +Q GM L+ Y++S+ED
Sbjct: 143 FFRIGDMLRCVVDEVELTKSK--HKRIKLAIDPKILNAKFKANRIQTGMTLSGYIESVED 200

Query: 112 HGYILHFGLPSFTGFLPRN---NLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPD 167
           HGYI+ F + +  GFL +    + A++  + D+  GL +  V++ +    ++V +     
Sbjct: 201 HGYIVSFEIENLVGFLSQQEGLDYAKSRELEDLPVGLPVNCVIQKVKDQGRMVTVGVSSS 260

Query: 168 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 227
            V K    +    S D L  G+ V+  +  I   G  LSFL  F G+V   HL       
Sbjct: 261 KVLKAKAHEGMRFSYDTLQAGLYVNGTIAKISTKGAQLSFLGGFRGSVTADHL------- 313

Query: 228 NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR 287
           N      +  KV ARI++VD  S+ + L+L    ++ +   S V++G I + + V+RVD+
Sbjct: 314 NQNQSLQERSKVVARIIYVDRKSKKIALSLLNITVNGQMDISQVEIGQIIEDAVVLRVDK 373

Query: 288 GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 347
           G+GLLL +     +   YV IS  +++ + K  K+++ GS  R R++    ++ LA   +
Sbjct: 374 GVGLLLQLGD---NLKGYVHISRASDKHIDKFGKQHRAGSKHRCRVIANSLIDELAIITM 430

Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
           + S  E    ++ D+KPG +V GK+I+++ FG +VQ    +KALCP  HMS+  +  P K
Sbjct: 431 QQSVLEQQFISYKDIKPGTLVMGKIISLEDFGILVQVTDHIKALCPRLHMSDITLKHPEK 490

Query: 408 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 465
           KFK G ++  RVL V  + +R+ +THKK++V S   +++SY EA + +  HG+I+ +  +
Sbjct: 491 KFKEGNKIKCRVLTVDARRRRLILTHKKSMVHSSHVVITSYEEAQENVTAHGFISSVRSN 550

Query: 466 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
           GCF+ FYN V+GF  +  L       P +++ VGQVV   I+S    +++++LS  +KP 
Sbjct: 551 GCFITFYNNVRGFVHKKYLSTQYIENPETVFFVGQVVLTYIVSVDAVNKKLSLS--LKPP 608

Query: 526 RVSEDDLVKLGSLVSGVVDV----VTPNAVVVYVIAKGYSKGTIPTEHLADH-------L 574
            ++      L    S VVDV     T   + V +   G +  ++P  HL+D        +
Sbjct: 609 ALTTSTSSNLKFNQSKVVDVDLFRATAEGLDVLMQPSGLA-ASVPVHHLSDFHSNSRALV 667

Query: 575 EHATVMKSVIKP-GYEF-DQLLVLDNESSNLLLSAKYSLINSAQ 616
            + T  +SV K    +F  QL+ +    S+++ S K SL+++ Q
Sbjct: 668 NYFTSQQSVNKDVNTKFLKQLVTVGKTKSSVIASRKQSLVDAVQ 711



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 184/377 (48%), Gaps = 25/377 (6%)

Query: 343 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 402
           ++ +LKA A EG+ F++  ++ G+ V G +  + + GA + F GG +      H+++ + 
Sbjct: 259 SSKVLKAKAHEGMRFSYDTLQAGLYVNGTIAKISTKGAQLSFLGGFRGSVTADHLNQNQS 318

Query: 403 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 462
           ++  ++ KV A +++  +  KSK+I ++     V  ++ I  S  E   ++I    + ++
Sbjct: 319 LQ--ERSKVVARIIY--VDRKSKKIALSLLNITVNGQMDI--SQVE-IGQIIEDAVVLRV 371

Query: 463 EKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
           +K  G  ++  + ++G+   S        +    +  G   +CR++++   S    L+ +
Sbjct: 372 DKGVGLLLQLGDNLKGYVHISRASDKHIDKFGKQHRAGSKHRCRVIAN---SLIDELAII 428

Query: 522 MKPTRVSEDDLV-----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLE 575
                V E   +     K G+LV G +  +    ++V V    + K   P  H++D  L+
Sbjct: 429 TMQQSVLEQQFISYKDIKPGTLVMGKIISLEDFGILVQVT--DHIKALCPRLHMSDITLK 486

Query: 576 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 634
           H    +   K G +   ++L +D     L+L+ K S+++S+  + +       N   HG+
Sbjct: 487 HP---EKKFKEGNKIKCRVLTVDARRRRLILTHKKSMVHSSHVVITSYEEAQENVTAHGF 543

Query: 635 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT-YYVGQSVRSNILDVNSETGRIT 693
           + ++   GCF+ F   + GF  + K +  Q  +  +T ++VGQ V + I+ V++   +++
Sbjct: 544 ISSVRSNGCFITFYNNVRGFVHK-KYLSTQYIENPETVFFVGQVVLTYIVSVDAVNKKLS 602

Query: 694 LSLKQSCCSSTDASFMQ 710
           LSLK    +++ +S ++
Sbjct: 603 LSLKPPALTTSTSSNLK 619



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 189/476 (39%), Gaps = 92/476 (19%)

Query: 916  SSSKRAKKKS------SYDV---GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
            SSSK  K K+      SYD    G  V   I +I     +L F  GF G +    +N ++
Sbjct: 258  SSSKVLKAKAHEGMRFSYDTLQAGLYVNGTIAKISTKGAQLSFLGGFRGSVTADHLNQNQ 317

Query: 967  SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1026
            S          +    V ARII    K            I  S+L ++  G     +   
Sbjct: 318  S---------LQERSKVVARIIYVDRKSK---------KIALSLLNITVNGQ---MDISQ 356

Query: 1027 VSIGQRV-TGYVYKVDNEWALL-TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1084
            V IGQ +    V +VD    LL  +  +LK  +                   HI +A   
Sbjct: 357  VEIGQIIEDAVVLRVDKGVGLLLQLGDNLKGYV-------------------HISRASDK 397

Query: 1085 HVLSINKE-----KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI--SKIL 1137
            H+    K+     K   R++     D ++  T+  S    Q FI   DI  G +   KI+
Sbjct: 398  HIDKFGKQHRAGSKHRCRVIANSLIDELAIITMQQSVLEQQ-FISYKDIKPGTLVMGKII 456

Query: 1138 SGVG-GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
            S    G++VQ+  H+        + +I +  P     E +F       EG  +KC+VL +
Sbjct: 457  SLEDFGILVQVTDHIKALCPRLHMSDITLKHP-----EKKFK------EGNKIKCRVLTV 505

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
                R    + L+ + S+              V +    +   E+   N+   G++ +V 
Sbjct: 506  DARRR---RLILTHKKSM--------------VHSSHVVITSYEEAQENVTAHGFISSVR 548

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
            S GCFI     +   V    LS  Y+E+PE  F +G++V   ++SV+ ++K++ ++LK  
Sbjct: 549  SNGCFITFYNNVRGFVHKKYLSTQYIENPETVFFVGQVVLTYIVSVDAVNKKLSLSLKPP 608

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
               T++ S +      +   +V   + R  + GL + ++ + L     V  LS+ H
Sbjct: 609  ALTTSTSSNL----KFNQSKVVDVDLFRATAEGLDVLMQPSGLAASVPVHHLSDFH 660


>gi|355709778|gb|AES03704.1| programmed cell death 11 [Mustela putorius furo]
          Length = 686

 Score =  280 bits (717), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 141/290 (48%), Positives = 205/290 (70%), Gaps = 4/290 (1%)

Query: 1514 EKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1572
            EK++ E+E+   EE L++    P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR
Sbjct: 396  EKQKAEKELSRIEEALMDPGRQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKAR 455

Query: 1573 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1632
            ++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L
Sbjct: 456  AVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHL 513

Query: 1633 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPR 1691
              +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q G    V+QRAL  LP 
Sbjct: 514  ADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPI 573

Query: 1692 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1751
             +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +
Sbjct: 574  KEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDI 633

Query: 1752 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+  A
Sbjct: 634  FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEAKSA 683



 Score = 47.4 bits (111), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 31/240 (12%)

Query: 875  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 934
            K P K+F  GQ++ ATV+  P SS A   L L+                    + G +  
Sbjct: 4    KHPDKKFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEKGEVAM 47

Query: 935  AEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 993
              + ++ P E L + F  G  GR+ +  ++D  S   E    +F   + V   ++A +  
Sbjct: 48   GRVVKVTPKEGLTVSFPFGKIGRVSVFHLSDSYS---ETPLEDFVPQKVVRCYVLATTG- 103

Query: 994  PDMKKSFLWELSIKPSML---TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1050
                   +  LS++ S     T S+I    +    D+  GQ + GYV  V        + 
Sbjct: 104  ------HVLTLSLRSSRTNPKTKSKITDPEINSIQDIQEGQLLRGYVKSVQPHGVXXXLG 157

Query: 1051 RHLKA-QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1109
              +     +   S Y PS+   + +    GK +T  VLS+N+EK L+ L   P   G  D
Sbjct: 158  PSVVGLARYPYVSQYSPSDKALYHKHLPEGKLLTAKVLSLNREKNLVELSFLPDDTGKPD 217



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 92  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-------VKPGL 144
           S++ +QEG +L  YVKS++ HG     G PS  G      +++ S  D       +  G 
Sbjct: 130 SIQDIQEGQLLRGYVKSVQPHGVXXXLG-PSVVGLARYPYVSQYSPSDKALYHKHLPEGK 188

Query: 145 LLQGVVRSIDRTRKVVYLSSDPDTVSK 171
           LL   V S++R + +V LS  PD   K
Sbjct: 189 LLTAKVLSLNREKNLVELSFLPDDTGK 215



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 99/253 (39%), Gaps = 45/253 (17%)

Query: 1069 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1128
            L+   ++F IG+A+   V+  +  K  L L L             I    ++    +G++
Sbjct: 3    LKHPDKKFRIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE----KGEV 45

Query: 1129 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1188
              GR+ K+ +   GL V       GRV    L +         Y E    PL  +   + 
Sbjct: 46   AMGRVVKV-TPKEGLTVSFPFGKIGRVSVFHLSD--------SYSE---TPLEDFVPQKV 93

Query: 1189 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1248
            V+C VL  +  V     + LSLRSS      TN    S   D     +  I+D+    ++
Sbjct: 94   VRCYVLATTGHV-----LTLSLRSS-----RTNPKTKSKITDP---EINSIQDIQEGQLL 140

Query: 1249 QGYVKNVTSKGCFIMLSRK---LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
            +GYVK+V   G    L      L     +S  S        K  P GKL+  +VLS+   
Sbjct: 141  RGYVKSVQPHGVXXXLGPSVVGLARYPYVSQYSPSDKALYHKHLPEGKLLTAKVLSLNRE 200

Query: 1306 SKRVEVTLKTSDS 1318
               VE++    D+
Sbjct: 201  KNLVELSFLPDDT 213


>gi|209877006|ref|XP_002139945.1| S1 RNA binding domain-containing protein [Cryptosporidium muris RN66]
 gi|209555551|gb|EEA05596.1| S1 RNA binding domain-containing protein [Cryptosporidium muris RN66]
          Length = 1948

 Score =  278 bits (711), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 222/743 (29%), Positives = 381/743 (51%), Gaps = 97/743 (13%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG--YDEGQFDPLSG 1182
            EG+ V  ++  +L G  GL+V+     YGR+H TEL +I ++DP+S   Y  G+   L+ 
Sbjct: 1227 EGNNVLCKVVGVLQGYEGLIVKFDEKNYGRIHCTELDDIWINDPISEDRYKVGK--KLTV 1284

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK-IED 1241
               G+  K K + IS T    + V+L   +S       N S +  +++T      K I D
Sbjct: 1285 KVLGKLSKNKRVLISHTGSKKY-VQLIWDAS-------NRSSIIKNIETSSTSRPKSIND 1336

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--FPIGKLVAGRV 1299
            +    ++ GY+K    +G F+ + R L  ++ L  LS+      E    FPIGKL+   +
Sbjct: 1337 IKLGSLINGYIKYSGKQGVFVHIGRNLIGRIKLRELSNKTTTEEEARELFPIGKLL-NPI 1395

Query: 1300 LSVEPLSK-RVEVTLK--TSD------SRTASQSEINNLS-------------------- 1330
            L +  L + +++++L    SD      S+    SE+++L+                    
Sbjct: 1396 LVIGGLEENKIDLSLSRLQSDNVILKISQQKDYSELDDLNSHGNGEEQLSNYETNLLGKL 1455

Query: 1331 ---NLHVGDIVIGQIKRVES-YGLFITIENT--NLVGLCHVSELSEDHVDNIE----TIY 1380
               +L++G I+ G+IK V + +G+F+T+++T   +  LC ++E   D+ + I     +IY
Sbjct: 1456 RFEDLYIGRILAGKIKHVSTKFGIFVTLKDTIDGINALCPLNESMNDYSNKITQFLPSIY 1515

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1440
            + G+ V  KI+KVD    RI + +K   F+   ++ +  S +  D  +  + + + +  L
Sbjct: 1516 KVGDDVLCKIIKVDSNSNRIWVSLKEKNFEELLEDSESKSTDNEDNQL--MCANDTTQNL 1573

Query: 1441 ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1500
             NS +  ++   ++E     ++ Q              D  Q +M + I  N     E +
Sbjct: 1574 SNSEIISEEYLADNELLHEHIIIQ--------------DGIQNNMQDSIESNVHEYSEDE 1619

Query: 1501 TIDEK------NNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSF 1553
             + E        NR  K  ++   E EIR+ E +L+E    P++ ++FERL+ S  + S 
Sbjct: 1620 ILKETELHEKPKNRQQKLAKQLAAEHEIRSEELKLIESSMNPQSINDFERLLISHKDVSS 1679

Query: 1554 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG-----NPP 1608
            +WIKYM++ L + ++EKAR +AERAL+ ++  E+ E+ NIW+AY N+E  +G     N  
Sbjct: 1680 LWIKYMSYFLELDELEKARIVAERALRNVSYSEDIERWNIWIAYLNMEIAFGKFNINNSS 1739

Query: 1609 EEAVVK----VFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1663
            E+ + K    +F+RA +   +PKK+++       R   N  +  +L K +KKF  S KVW
Sbjct: 1740 EKELPKNFESLFERAYRNVGNPKKLYIQCSQSLSRFNYNVWSLLILEKALKKFSKSRKVW 1799

Query: 1664 LRRVQRLLKQQ--QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1721
            L  ++ L K    Q+    ++ +AL S+ R K I+ I+  A +E ++G  +R R++FE +
Sbjct: 1800 LEYIKCLFKNNKVQQARDEIIPKALQSIGRIKLIRLITDIARVELESGNFNRARTIFENL 1859

Query: 1722 LSEYPKRTDLWSIYLDQEIRLG-------DVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1774
            +SE PKR DLWS Y D  I+         D+++IR +F+ AI   L P+KMKFLF ++L 
Sbjct: 1860 ISENPKRIDLWSQYFDAVIKYFNSSNSEVDINIIRSIFKSAIRNDLKPRKMKFLFSRWLA 1919

Query: 1775 YEKSVGEEERIEYVKQKAMEYVE 1797
            +EK  G  E  + V++ A EYV+
Sbjct: 1920 FEKEYGSLEDQKIVQKYAAEYVQ 1942



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 6/119 (5%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 62
           L+ ++ EV +K+L + LPGG  GLA   + L+    NE   N   LL   F  G +V   
Sbjct: 61  LFCIIDEVYDKELKLSLPGGHFGLATINNTLEDEASNEKLRNL--LLDERFKAGDIVIAA 118

Query: 63  VLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 121
           ++     + E+  R   ++  L+   K L L    +G V++A + SIED+GY L   +P
Sbjct: 119 IICSSKGRVEVTIRPSIVNAGLTFSSKALGL----KGYVISATIISIEDYGYTLDVSIP 173


>gi|241730208|ref|XP_002413818.1| programmed cell death protein, putative [Ixodes scapularis]
 gi|215507634|gb|EEC17126.1| programmed cell death protein, putative [Ixodes scapularis]
          Length = 835

 Score =  277 bits (708), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 213/636 (33%), Positives = 334/636 (52%), Gaps = 87/636 (13%)

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            Y  GQ V+ KVL + +       VELS               L TD   PG  +      
Sbjct: 259  YKIGQAVRAKVLRVDKNT-----VELS--------------QLDTDTLEPGSKV------ 293

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE--KEFPIGKLVAGRVL 1300
              N  V   V   T+ G ++ L       + L+++SD + ++    +     + V  R+L
Sbjct: 294  --NACV---VSVRTTLGAYLCLPLGHRGVMGLTDVSDDFSKTTALMESHLQARYVRCRIL 348

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
            + +  + +  V+++ S    A  S     E+++ ++L V   + G +K V  +G F+ + 
Sbjct: 349  TQDEETGQFRVSMRESRLNMARASAVVDIEVDDFNDLSVDTSLRGFVKSVNKFGCFVNV- 407

Query: 1356 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA-- 1413
              N+ GL  +S+L    +     + + G  V V +  +   ++++ L + +S  ++    
Sbjct: 408  GYNIDGLVPLSKLP-GAIQRNRKMLKIGSLVSVVVKHIQAAEKKLLLTLSNSEIQSPTAP 466

Query: 1414 --DNLQMSSEEE----SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIES 1467
                L  +SE E    S E   ++    R SL E  S  V+                   
Sbjct: 467  RKRRLSSTSETEPIYDSTEKKSKLDPLPRLSLGEGFSWDVE------------------- 507

Query: 1468 RASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE-KEEREQ---EIR 1523
              + P L  +L+D  P +       Q   DEA   +E+ ++H  +KE +EEREQ   ++R
Sbjct: 508  --ATPNLAKHLED-APAV-------QSSDDEA---EEQGSKHKTRKEIQEEREQAEAKLR 554

Query: 1524 AAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1582
              E RL++    P T D+F+RLV  SPNSS VW++YMAF L  A++EKAR++A RAL  I
Sbjct: 555  ERERRLVDPSREPETVDDFDRLVLVSPNSSIVWLRYMAFHLRQAEIEKARTVARRALDCI 614

Query: 1583 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1642
              REE EKLN+W A  NLE+ YG   ++++ +VF++ALQ  D  KV+  L  +Y    +N
Sbjct: 615  QFREEQEKLNVWTALLNLEHLYGT--QDSLNEVFRQALQCNDALKVYTHLAQIYVSANKN 672

Query: 1643 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQT 1701
            +LA+EL  +M+ KFK +  VWL      +K    E  ++++QRAL SLP+  H+  IS+ 
Sbjct: 673  ELAEELYKQMLNKFKQNVDVWLGFGLFYIKSGNVESCRSLLQRALKSLPKQDHVAIISKF 732

Query: 1702 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1761
            A +EFK G  +RG+SMF+ IL+ YPKRTDLW +Y+D   +L DV+ +R   ERA SL+L 
Sbjct: 733  AQMEFKYGDVERGKSMFDSILANYPKRTDLWLVYVDLLAKLPDVEGVRKTLERATSLNLN 792

Query: 1762 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            PKKMK LFKK+L++EK  G++   + V+Q+A+EYVE
Sbjct: 793  PKKMKPLFKKWLDFEKQHGDDTTSQKVRQRAVEYVE 828



 Score = 68.9 bits (167), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 173/401 (43%), Gaps = 57/401 (14%)

Query: 936  EITE-IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 994
            EI E ++  +L++    G  GR+HIT + + +    EN    F+ G  +   I+ K+   
Sbjct: 125  EIVESVEKFQLKVSLKGGSRGRVHITMIKE-QPKEGENPMQGFQQGDKLRLHILGKTA-- 181

Query: 995  DMKKSFLWELSIKPSMLTVSEIGSKLLFEE---CDVSIGQRVTGYVYKVDNEWALLTISR 1051
             ++   +  ++ + ++   S      LF     C+V  G  VTG+          L +S 
Sbjct: 182  -VQHKRMLAITGRKNLTECS------LFPHRGGCEVRPGNTVTGFFSHFSEGSLFLVLST 234

Query: 1052 HLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1111
               A+L IL+      +L    + + IG+AV   VL ++K                   T
Sbjct: 235  DKMAKLPILNMNLPAEDLPYVHKLYKIGQAVRAKVLRVDK------------------NT 276

Query: 1112 VDISNDNMQTFIHEGDIVGGRISKILSGVGG-LVVQIGPHLYGRVHFTELKNICVSDPLS 1170
            V++S  +  T +  G  V   +  + + +G  L + +G    G +  T+     VSD  S
Sbjct: 277  VELSQLDTDT-LEPGSKVNACVVSVRTTLGAYLCLPLGHR--GVMGLTD-----VSDDFS 328

Query: 1171 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1230
                     +  + + ++V+C++L       G F V  S+R S   M+   S+ +  +VD
Sbjct: 329  KTTA----LMESHLQARYVRCRILTQDEET-GQFRV--SMRESRLNMARA-SAVVDIEVD 380

Query: 1231 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1290
                      DLS +  ++G+VK+V   GCF+ +   +D  V LS L  G ++   K   
Sbjct: 381  -------DFNDLSVDTSLRGFVKSVNKFGCFVNVGYNIDGLVPLSKLP-GAIQRNRKMLK 432

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1331
            IG LV+  V  ++   K++ +TL  S+ ++ +      LS+
Sbjct: 433  IGSLVSVVVKHIQAAEKKLLLTLSNSEIQSPTAPRKRRLSS 473



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 123/303 (40%), Gaps = 25/303 (8%)

Query: 372 VIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLG---VKSKR 426
           V +V+ F   V   GG +    +  + E   E   P + F+ G +L   +LG   V+ KR
Sbjct: 127 VESVEKFQLKVSLKGGSRGRVHITMIKEQPKEGENPMQGFQQGDKLRLHILGKTAVQHKR 186

Query: 427 -ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 485
            + +T +K L +  L       E        G+ +   +   F+          P   + 
Sbjct: 187 MLAITGRKNLTECSLFPHRGGCEVRPGNTVTGFFSHFSEGSLFLVLSTDKMAKLPILNMN 246

Query: 486 LDPGCEP--SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 543
           L     P    +Y +GQ V+ +++     +  + LS +       + D ++ GS V+  V
Sbjct: 247 LPAEDLPYVHKLYKIGQAVRAKVLRVDKNT--VELSQL-------DTDTLEPGSKVNACV 297

Query: 544 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLDNESSN 602
             V         +  G+ +G +    ++D     T +M+S ++  Y   ++L  D E+  
Sbjct: 298 VSVRTTLGAYLCLPLGH-RGVMGLTDVSDDFSKTTALMESHLQARYVRCRILTQDEETGQ 356

Query: 603 LLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 656
             +S + S +N A+          D + +  ++ + G+V ++ + GCFV     + G  P
Sbjct: 357 FRVSMRESRLNMARASAVVDIEVDDFNDLSVDTSLRGFVKSVNKFGCFVNVGYNIDGLVP 416

Query: 657 RSK 659
            SK
Sbjct: 417 LSK 419


>gi|156348528|ref|XP_001621882.1| hypothetical protein NEMVEDRAFT_v1g143331 [Nematostella vectensis]
 gi|156208205|gb|EDO29782.1| predicted protein [Nematostella vectensis]
          Length = 274

 Score =  276 bits (707), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 132/269 (49%), Positives = 193/269 (71%), Gaps = 3/269 (1%)

Query: 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1593
             P   ++F+RLV SSPN+S  W++YMAF L   +++KAR++AERAL+TI+ REE EKLNI
Sbjct: 6    TPECAEDFDRLVLSSPNNSVTWLQYMAFHLHTTEIDKARAVAERALRTISFREEREKLNI 65

Query: 1594 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1653
            WVA  NLEN YG   +E+++KVF+RALQ+ +PKKV   L+ +Y ++E+ +LA++L + M 
Sbjct: 66   WVALMNLENLYGT--QESLIKVFERALQHNEPKKVFFHLITIYTQSEKTELAEKLFHTMT 123

Query: 1654 KKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            K+F  S  VW+   +  +K  + +  + ++QR L SLP  KH++ I Q A++EFKNG   
Sbjct: 124  KRFSQSKTVWIEFGRFFMKTGKPDSARKLLQRGLKSLPTRKHVETIVQFALMEFKNGDPQ 183

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
            RG+++ E +LS YPKRTD+WS+Y+D   + G  D +R +FER I ++L  +KMKFLFKKY
Sbjct: 184  RGQTVLESVLSNYPKRTDIWSVYIDMMSKQGHPDTVRQIFERVIHMNLSSRKMKFLFKKY 243

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            L++E+  G+E  +E VK KAMEYVES +A
Sbjct: 244  LDFEREHGDEMSVEAVKTKAMEYVESKVA 272


>gi|449675704|ref|XP_002155874.2| PREDICTED: protein RRP5 homolog [Hydra magnipapillata]
          Length = 824

 Score =  275 bits (703), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 184/577 (31%), Positives = 312/577 (54%), Gaps = 29/577 (5%)

Query: 1240 EDL--SPNMIVQGYVKNV-TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            EDL  +  +++ G +  V  + G  I LS        ++ LSD + ESP   F + + V 
Sbjct: 253  EDLNVAKGVVINGKISKVLKNAGLLIELSNGKAGVAHITELSDHFEESPLNGFAVDQFVR 312

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRT----ASQSE----INNLSNLHVGDIVIGQIKRVESY 1348
             +VL+++   K  E+ L    SR     A+  E    IN   ++  GDI+ G +K     
Sbjct: 313  CKVLAIK---KNDEIDLSLRQSRINEGQANAGEWDRYINGYDDIKEGDILRGYVKSCSKI 369

Query: 1349 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1408
            G+F+++  T + G   +  LS+  V + E+++  G+ VK K++ +D     I L ++   
Sbjct: 370  GVFVSLSQT-INGRVQIKNLSQYFVKDFESLFHVGKLVKAKVIHIDPTTNHIDLSLRGK- 427

Query: 1409 FKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDM-----DMESEDGGSLVLA 1463
               D +++  +   +    + E     +    E      Q++     + + +D    V  
Sbjct: 428  ---DVNDVDPAPPPKRKLPVNEESEIKKKKKNEEKEENEQNLSSSESEFDIDDAKDKVKE 484

Query: 1464 QIESRA-SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEI 1522
            ++  +   +   + N ++ +P  +   S +    ++   ++ K  +  KK  K+  E+ +
Sbjct: 485  EVTKQTLKIDSFDWNEEETKPKKNESDSGDSSEDEKKAKVEAKKTKRQKKAAKKAEEEFL 544

Query: 1523 RAAEERLLEKDAP-RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1581
              AE  LL+ D    + ++F+RL   SPNSS +WI+YMAF L   +++KAR +A +ALQT
Sbjct: 545  HKAELALLDTDRHVDSSEDFDRLCLGSPNSSIIWIQYMAFHLHSVEIDKARHVARKALQT 604

Query: 1582 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1641
            I+ REE EKLN+WVA  NLEN YG    E++ KV   A+Q  DPKK++L +L ++ RT +
Sbjct: 605  ISFREEQEKLNVWVALLNLENMYGT--NESLEKVLHEAVQTNDPKKIYLKVLDIFARTNK 662

Query: 1642 NKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQ 1700
               A++L   ++K+FK S  VW+     L+K  + E  + ++QR L SL   KHI  I Q
Sbjct: 663  ITEAEKLYRIVLKRFKGSKSVWISYGFFLMKCGKLEEARNLLQRCLKSLHERKHIATIVQ 722

Query: 1701 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1760
             A++E+K G   RG ++ E +L  YPKR+D+WSIY+D  I++GD + +R +FER  +L +
Sbjct: 723  FALMEYKFGEPQRGSTILESVLKNYPKRSDIWSIYIDMTIKMGDYEQVRNIFERVTTLKM 782

Query: 1761 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
              KK+KF+FK+YLE+E+  G +  IE V+++  +YVE
Sbjct: 783  SAKKIKFMFKRYLEFEQKYGNKTTIEAVRKRGNDYVE 819



 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 197/400 (49%), Gaps = 56/400 (14%)

Query: 929  VGSLVQAEITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
            +GSLV A +  IKP +L +    G  +GRIHI+ ++D        L + FK  Q V A++
Sbjct: 74   LGSLVSAVVKGIKPAQLSVTLMNGRLNGRIHISNIHDTIEQGKSPLKA-FKPLQVVEAKV 132

Query: 988  IAKSN----------KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1037
            I   +            ++ +S + ELS+KPS+LT  E  ++    +   SIG+ V G+V
Sbjct: 133  IGFRDLRTHNYLPISHTNISRSMV-ELSLKPSVLTSQETETEKKINQ--FSIGEVVNGFV 189

Query: 1038 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1097
              V  +   ++++  +K ++ +L+ +    +L +++  F +G   +  +LS  ++     
Sbjct: 190  ASVTKKSLWISVNPLVKGKVSVLNISENIMDLNKWKSVFKVGLGYSFRILSCKED----- 244

Query: 1098 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1157
                          ++++       + +G ++ G+ISK+L    GL++++     G  H 
Sbjct: 245  -------------FLELTRLGEDLNVAKGVVINGKISKVLKN-AGLLIELSNGKAGVAHI 290

Query: 1158 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1217
            TEL            D  +  PL+G+   QFV+CKVL I +       ++LSLR S    
Sbjct: 291  TELS-----------DHFEESPLNGFAVDQFVRCKVLAIKKND----EIDLSLRQSRINE 335

Query: 1218 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1277
               N+ +         +++   +D+    I++GYVK+ +  G F+ LS+ ++ +V + NL
Sbjct: 336  GQANAGEWD-------RYINGYDDIKEGDILRGYVKSCSKIGVFVSLSQTINGRVQIKNL 388

Query: 1278 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
            S  +V+  E  F +GKLV  +V+ ++P +  ++++L+  D
Sbjct: 389  SQYFVKDFESLFHVGKLVKAKVIHIDPTTNHIDLSLRGKD 428



 Score = 44.7 bits (104), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 18/198 (9%)

Query: 521 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 580
            ++ TR+ ED  V  G +++G +  V  NA ++  ++ G + G      L+DH E + + 
Sbjct: 245 FLELTRLGEDLNVAKGVVINGKISKVLKNAGLLIELSNGKA-GVAHITELSDHFEESPL- 302

Query: 581 KSVIKPGYEFDQLL----VLDNESSNLLLSAKYSLINSAQQLPSDASH-------IHPNS 629
                 G+  DQ +    +   ++  + LS + S IN  Q    +          I    
Sbjct: 303 -----NGFAVDQFVRCKVLAIKKNDEIDLSLRQSRINEGQANAGEWDRYINGYDDIKEGD 357

Query: 630 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
           ++ GYV +  + G FV     + G             D    ++VG+ V++ ++ ++  T
Sbjct: 358 ILRGYVKSCSKIGVFVSLSQTINGRVQIKNLSQYFVKDFESLFHVGKLVKAKVIHIDPTT 417

Query: 690 GRITLSLKQSCCSSTDAS 707
             I LSL+    +  D +
Sbjct: 418 NHIDLSLRGKDVNDVDPA 435



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 9/172 (5%)

Query: 361 DVKPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           +V  G+V+ GK+  V  + G +++   G   +  +  +S+     P   F V   +  +V
Sbjct: 256 NVAKGVVINGKISKVLKNAGLLIELSNGKAGVAHITELSDHFEESPLNGFAVDQFVRCKV 315

Query: 420 LGVK-SKRITVTHKKTLVKSKLA-------ILSSYAEATDRLITHGWITKIEKHGCFVRF 471
           L +K +  I ++ +++ +    A        ++ Y +  +  I  G++    K G FV  
Sbjct: 316 LAIKKNDEIDLSLRQSRINEGQANAGEWDRYINGYDDIKEGDILRGYVKSCSKIGVFVSL 375

Query: 472 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
              + G      L      +  S++HVG++VK +++   P +  I+LS   K
Sbjct: 376 SQTINGRVQIKNLSQYFVKDFESLFHVGKLVKAKVIHIDPTTNHIDLSLRGK 427


>gi|114325445|gb|AAH55276.3| Pdcd11 protein [Mus musculus]
          Length = 297

 Score =  275 bits (702), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 140/287 (48%), Positives = 201/287 (70%), Gaps = 4/287 (1%)

Query: 1514 EKEEREQEIRAAEERLLEK-DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1572
            EK++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR
Sbjct: 6    EKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKAR 65

Query: 1573 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1632
            ++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L
Sbjct: 66   AVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHL 123

Query: 1633 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPR 1691
              +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP 
Sbjct: 124  ADIYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPA 183

Query: 1692 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1751
             +H+  I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +
Sbjct: 184  KEHVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDI 243

Query: 1752 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 244  FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 290


>gi|154309384|ref|XP_001554026.1| hypothetical protein BC1G_07586 [Botryotinia fuckeliana B05.10]
          Length = 1678

 Score =  274 bits (700), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 329/1308 (25%), Positives = 580/1308 (44%), Gaps = 160/1308 (12%)

Query: 364  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAELVF 417
            PG  V+  ++ V S G   +  G V     L H        E E     KKFK+GA++  
Sbjct: 360  PGTAVETLIVDVSSRGLTGKVMGMVDVTADLMHSGTSVMNQELE-----KKFKIGAKVRG 414

Query: 418  RVLGV----KSKRITVT---HKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKH 465
            RV+        +++ ++   H  +L + +     +     D L     +    I K+E  
Sbjct: 415  RVICTFPNSDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLDTLPLSTIVEEVTIKKVESG 474

Query: 466  -GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL 518
             G FV     G+ GF   S +    ++   E +  Y VG V + R++  +S+     I+L
Sbjct: 475  VGLFVDVGIKGIPGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVLGYNSLDGVYLISL 534

Query: 519  --SFMMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD 572
              S + +P    ED  +K+G +V G V+  +V    V  ++  +A+  S G +P  HLAD
Sbjct: 535  EKSVLEQPYLRIED--LKIGEVVKGKVEKLIVNDKGVGGLLVNLAENIS-GLVPETHLAD 591

Query: 573  -HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 630
              L H    +   K G     ++L  D     + L+ K +L+NS          I     
Sbjct: 592  IQLLHP---EKKFKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESPALVSYDDITVGMQ 648

Query: 631  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
              G + NI+ TG  V+F G + GF P S+  +    D ++ + +GQ V  ++L V+ E  
Sbjct: 649  SPGTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAK 708

Query: 691  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 750
            ++T+S K             ++  + E ++ L   K N      ++G  + +++      
Sbjct: 709  KLTVSCKDPSVFGLAQQNALKNLKIGEIVSALVIEKSNDDISVEIQGLGLKAILP----- 763

Query: 751  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFI 809
                G +    E+     F          +  G V+   A+LD  + +RL+ L+ K   +
Sbjct: 764  ---VGHLTDGSENKSRSSF--------KNIRVGQVLSDLAVLDKLEPKRLIVLTNKPALV 812

Query: 810  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS-------------L 856
                     + AQ K   R    D+   +TV+  V+ +    + +              +
Sbjct: 813  ---------KAAQNKTLLR-MFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNKI 862

Query: 857  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 916
            PE N  +       Y T +       +GQ      MA  +S       L   A  E    
Sbjct: 863  PEKNLRLPDFGFKKYQTIEVKVLTIDHGQRRFLLSMADATSDKKSNEPLAPGANQEAVNP 922

Query: 917  SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLF 974
              +  K      +G L +A ++ +K  ++ ++      GRI +++  D  S++   +   
Sbjct: 923  IDETIKSIEDITLGRLTKARVSSVKDTQVNVQLADNIQGRIDVSQAFDSWSDIKSKKQPL 982

Query: 975  SNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEEC 1025
              F   Q V  R++   +  + +         K+ ++ELS KPS  T S      L +  
Sbjct: 983  KTFSPKQIVDVRVLGIHDARNHRFLPISHRSGKTLVFELSAKPSDQTESAQDPVSLDK-- 1040

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
             + +G     +V  V  +   + IS +++ ++  LD + + S L++    F IG A+  H
Sbjct: 1041 -IKVGSSWLAFVNNVGVDCLWVNISPNVRGRISALDVSDDVSLLKDLAANFPIGSAIRVH 1099

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGL 1143
            V  ++ E   L L  R  QD               TF  + +G IV G+++++      +
Sbjct: 1100 VKGVDVETNRLDLSARSSQDS-----------EALTFDKLSQGMIVPGKVTRV--NERQV 1146

Query: 1144 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1203
            +VQ+   +   ++ T+L +          D  + DP S Y +   V+  V +I    +  
Sbjct: 1147 MVQLTDSISAPINLTDLCD----------DYSEADP-SKYSKNDIVRVCVTDIDVPNK-- 1193

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
              V LS R+S    SS    D           +  I  L  N IV+G+VK+V  KG F+ 
Sbjct: 1194 -RVRLSTRASRVMNSSAAVQD---------PEISSISQLKVNDIVRGFVKHVADKGLFVN 1243

Query: 1264 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTA 1321
            L   + A V +S+LSD Y++  + EF + +LV G+V  V+ +   V+++LK S  D    
Sbjct: 1244 LGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLSLKPSVIDKDYV 1303

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1380
            +    N++    V  +V G+I++VE +G+FI ++ + N+ GLCH SE++E  V +++ +Y
Sbjct: 1304 APLTFNDI---QVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLY 1360

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1440
              G+ VK  +LK+D EK+RIS  MK+S+F+ D +     S+++  + ++           
Sbjct: 1361 SEGDAVKAIVLKMDTEKKRISFSMKASHFE-DGNESDDESDDDGVDGVKLDSMDIDDDDD 1419

Query: 1441 ENSSVA-------VQDMDMESEDGGSLVLAQIE---SRASVPPLEVNLDDEQPDMDNGIS 1490
            ++           VQD++  +EDG     +  E   +   VP L     D   D+   + 
Sbjct: 1420 DDDDSEGGIDLDDVQDLESAAEDGDEASDSDEEMPDAEGDVPALSAGGFDWSADL---LD 1476

Query: 1491 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1550
            Q  G ++    +D  +    +K +K++R+ EI+      L+ + P++  +FERL+   P+
Sbjct: 1477 QADGQSN----VDSDDEGTEEKPKKKKRKAEIKVDRTGDLDANGPQSISDFERLLLGQPD 1532

Query: 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1598
            SS +W +YMAF + ++++ KAR IAERA++TIN+REE EKLNIW+A  
Sbjct: 1533 SSSLWTQYMAFQMQLSELGKAREIAERAIKTINMREETEKLNIWLALL 1580



 Score =  205 bits (522), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 193/713 (27%), Positives = 319/713 (44%), Gaps = 61/713 (8%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL-------------L 49
           + G V+++N  D+ + LP  L G        D + +                       L
Sbjct: 154 VLGQVSQINATDIALSLPNNLTGYVPITAISDKVTERVEAIAAAEEDDADDEVEVEDIDL 213

Query: 50  PTIFHVGQLVSCIVLQLDDDKKEI----GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
             +F +GQ +   V+   DD        GKR+I LSLR      G++ + +     L A 
Sbjct: 214 KKMFSLGQYLRAYVVSTSDDTNTATLGKGKRRIELSLRPQHANNGVTPQNLINNTTLMAS 273

Query: 106 VKSIEDHGYILHFGL--PSFTGFLPRNNLA-ENSGIDVKPGLLLQGVVRSIDRTRKVVYL 162
           V S+EDHG I++ GL      GF+   ++  E    DV+ G +   +V  +    K V L
Sbjct: 274 VTSVEDHGLIMNIGLEDTGIRGFMGAKDIGYEVVLADVQEGAVFLCMVTGLSSNGKTVKL 333

Query: 163 SSDPDTVSKCVTKD--LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 220
            +D   +      +      ++D  +PG  V T +  +   G+    +     T D+ H 
Sbjct: 334 CADTQKIGNVKKSNYLTDAPTVDAFLPGTAVETLIVDVSSRGLTGKVMGMVDVTADLMHS 393

Query: 221 QNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPY---LLHNRA--------P 267
             +      +  +    KV  R++   P S  + +G++L  +   L   +A        P
Sbjct: 394 GTSVMNQELEKKFKIGAKVRGRVICTFPNSDPQKLGISLLDHVTSLTQQQAGKPGNKVNP 453

Query: 268 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YK 324
              + +  I ++  + +V+ G+GL +D+    +  P +V IS V + ++  LE+    YK
Sbjct: 454 LDTLPLSTIVEEVTIKKVESGVGLFVDVGIKGI--PGFVHISRVKDGKIETLEETTGPYK 511

Query: 325 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV---IAVDS--FG 379
            GS  R R+LG+  L+G+    L+ S  E       D+K G VVKGKV   I  D    G
Sbjct: 512 VGSVHRGRVLGYNSLDGVYLISLEKSVLEQPYLRIEDLKIGEVVKGKVEKLIVNDKGVGG 571

Query: 380 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVK 437
            +V     +  L P  H+++ +++ P KKFK G  +  RVL      ++I +T KKTLV 
Sbjct: 572 LLVNLAENISGLVPETHLADIQLLHPEKKFKEGMAVTARVLSTDPGKRQIRLTLKKTLVN 631

Query: 438 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 497
           S+   L SY + T  + + G I  I   G  V+FY  V+GF P SE+      +P+  + 
Sbjct: 632 SESPALVSYDDITVGMQSPGTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPNQHFK 691

Query: 498 VGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV 551
           +GQVV   ++   P ++++ +S      F +      ++  +K+G +VS +V   + + +
Sbjct: 692 IGQVVNVHVLKVDPEAKKLTVSCKDPSVFGLAQQNALKN--LKIGEIVSALVIEKSNDDI 749

Query: 552 VVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDN-ESSNLL-LSAK 608
            V +   G  K  +P  HL D  E+ +      I+ G     L VLD  E   L+ L+ K
Sbjct: 750 SVEIQGLGL-KAILPVGHLTDGSENKSRSSFKNIRVGQVLSDLAVLDKLEPKRLIVLTNK 808

Query: 609 YSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
            +L+ +AQ   L      +     VHG+V NI  T  FV+F G LTG  P++K
Sbjct: 809 PALVKAAQNKTLLRMFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNK 861



 Score = 44.7 bits (104), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 22/277 (7%)

Query: 174  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 233
            ++D + ++ D L  GM+V  +V  + E  VM+      +  +++  L + +   +  + Y
Sbjct: 1117 SQDSEALTFDKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEAD-PSKY 1175

Query: 234  NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVR 284
            +++  V   +  +D  ++ V L+     + N +           S +KV DI        
Sbjct: 1176 SKNDIVRVCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHV 1235

Query: 285  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 344
             D+GL + L    T     AYV ISD+++  ++  + +++    V+ ++     +     
Sbjct: 1236 ADKGLFVNLGGNVT-----AYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQ 1290

Query: 345  GILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSE 399
              LK S  +       T +D++   VV GK+  V+ FG  +   G   V  LC    M+E
Sbjct: 1291 LSLKPSVIDKDYVAPLTFNDIQVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAE 1350

Query: 400  FEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 434
              +    K +  G  +   VL + +  KRI+ + K +
Sbjct: 1351 KRVHDVKKLYSEGDAVKAIVLKMDTEKKRISFSMKAS 1387



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 114/536 (21%), Positives = 210/536 (39%), Gaps = 74/536 (13%)

Query: 53   FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS------LETVQEGMVLTAYV 106
              VGQ++S + +    DK E  KR I L+ + +L+    +       + V+E   +  +V
Sbjct: 782  IRVGQVLSDLAVL---DKLE-PKRLIVLTNKPALVKAAQNKTLLRMFDDVKEKKTVHGFV 837

Query: 107  KSIEDHGYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTRKVVYL 162
            K+I      + FG    TG LP+N + E +        K    ++  V +ID  ++   L
Sbjct: 838  KNITLTAVFVQFG-GGLTGLLPKNKIPEKNLRLPDFGFKKYQTIEVKVLTIDHGQRRFLL 896

Query: 163  SSDPDTVSKCVTKDLKG--------------ISIDLLVPGMMVSTRVQSILENGVMLSFL 208
            S    T  K   + L                 SI+ +  G +   RV S+ +  V +   
Sbjct: 897  SMADATSDKKSNEPLAPGANQEAVNPIDETIKSIEDITLGRLTKARVSSVKDTQVNVQLA 956

Query: 209  TYFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARILFVD--------PTSRAVGLT 256
                G +D+    +++     K      ++  + V+ R+L +         P S   G T
Sbjct: 957  DNIQGRIDVSQAFDSWSDIKSKKQPLKTFSPKQIVDVRVLGIHDARNHRFLPISHRSGKT 1016

Query: 257  LNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS------- 309
            L   +    A PS  +     D   + ++  G   L  + +  V    +V IS       
Sbjct: 1017 L---VFELSAKPSD-QTESAQDPVSLDKIKVGSSWLAFVNNVGVDC-LWVNISPNVRGRI 1071

Query: 310  ---DVAEEE--VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
               DV+++   ++ L   +  GS +RV + G   +E     +   S+ +    T   +  
Sbjct: 1072 SALDVSDDVSLLKDLAANFPIGSAIRVHVKGV-DVETNRLDLSARSSQDSEALTFDKLSQ 1130

Query: 365  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVKPGKKFKVGAELVFRV---- 419
            GM+V GKV  V+    +VQ    + A   L  +  ++    P K  K     + RV    
Sbjct: 1131 GMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEADPSKYSK---NDIVRVCVTD 1187

Query: 420  LGVKSKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
            + V +KR+ ++ + + V +  A      +SS ++     I  G++  +   G FV     
Sbjct: 1188 IDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHVADKGLFVNLGGN 1247

Query: 475  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
            V  +   S+L      +  S + V Q+VK ++         + LS  +KP+ + +D
Sbjct: 1248 VTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLS--LKPSVIDKD 1301


>gi|449275571|gb|EMC84384.1| Protein RRP5 like protein, partial [Columba livia]
          Length = 585

 Score =  273 bits (699), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 137/286 (47%), Positives = 197/286 (68%), Gaps = 4/286 (1%)

Query: 1515 KEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1573
            ++++E+E+   E  L++    P++ D+F+RLV SSPNSS +W++YMAF L   ++EKAR+
Sbjct: 295  RQKKEKELCKLEAALMDPSRQPQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARA 354

Query: 1574 IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL 1633
            +AERAL+TI  REE EKLN+WVA  NLEN YG   EE ++KVF+RA+QY +P KV   L 
Sbjct: 355  VAERALKTICFREEQEKLNVWVALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLC 412

Query: 1634 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1692
             +Y  +E+ K A+EL + M+K+F+    VWL+    LLKQ Q E    +++RAL +LP  
Sbjct: 413  DIYANSEKYKQAEELYHTMLKRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTK 472

Query: 1693 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1752
            +H+  IS+ A LEF+ G  +  +++FE  L+ YPKRTD+WSIY+D  I+ G    +R +F
Sbjct: 473  EHVDVISRFAQLEFRFGDPEHAKALFESTLNSYPKRTDIWSIYMDIMIKQGSQQEVRDIF 532

Query: 1753 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            ER I +SL PKKMKF FK+YL+YE   G  E +  VK+ A+EYVE+
Sbjct: 533  ERVIHMSLAPKKMKFFFKRYLDYENKFGTAESVLAVKRAALEYVET 578



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 11/116 (9%)

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            ++LSLR S     S N  +   DV+     +  I D+    +V+GYVK+VT  G F  LS
Sbjct: 12   IQLSLRQSRLNPKSNNKVE---DVE-----ITCINDVKKGQLVRGYVKSVTPSGVFFGLS 63

Query: 1266 RKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
              L  ++L  N+S  +V+     EK  P GKL+  +VL V    K VE++L   D+
Sbjct: 64   TSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLGVNGKEKHVELSLLPEDT 119


>gi|384494519|gb|EIE85010.1| hypothetical protein RO3G_09720 [Rhizopus delemar RA 99-880]
          Length = 397

 Score =  273 bits (699), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 131/270 (48%), Positives = 196/270 (72%), Gaps = 3/270 (1%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L ++AP+   EFERL+  SPNSS++WI YMA+ L +++++KAR+I ERAL+TIN REE E
Sbjct: 128  LNENAPQNAHEFERLLVGSPNSSYLWINYMAYELKLSEIDKARAIGERALKTINFREEQE 187

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLN+WVA  NLEN +G+  E+ + +VF+RA  YC+P KV+  +  +YER+++   A+ + 
Sbjct: 188  KLNVWVALLNLENNFGS--EDTLQEVFKRATIYCEPIKVYQHMTEIYERSDKLDKAESVW 245

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
             +M KKF  S +VW      LL+Q + E  + ++QR+L  LP+H+HI+ + + A LEFK+
Sbjct: 246  EEMCKKFGQSPEVWTGFGLFLLQQDKTEKAREILQRSLRILPKHEHIQTVLKFAQLEFKH 305

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1768
            G A+RGR++ EG +S +PKR DLW++YLD EI+ GD+D+ R LFER  SL    KKMKF+
Sbjct: 306  GEAERGRTLLEGTVSNHPKRLDLWNVYLDMEIKAGDIDMARRLFERVASLKFSSKKMKFI 365

Query: 1769 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            FKK+L++EKS G ++ ++ VK++ + YVES
Sbjct: 366  FKKWLQFEKSHGSDDDVQRVKERTLAYVES 395


>gi|403159936|ref|XP_003320504.2| hypothetical protein PGTG_02526 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375169342|gb|EFP76085.2| hypothetical protein PGTG_02526 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1909

 Score =  273 bits (697), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 192/644 (29%), Positives = 333/644 (51%), Gaps = 67/644 (10%)

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
            S Y +G  +   V++I +    T+   LS+R S D    TN S  S+  D P   + + +
Sbjct: 1296 SKYQDGSEITACVIQIDKKSLTTY---LSVRPS-DLNKLTNESLKSSVKDRP---IRQWK 1348

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            +L     ++G+V+ VT  G  + +   + A+V + +L D  +   + +F IG++V+G+++
Sbjct: 1349 NLRIGTAIRGFVQRVTDHGLMLQVGTNIRAQVSVQDLFDEDMPDWKSKFRIGQVVSGKII 1408

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            S+     RV +    S  +     E      L +G I+  ++  +++YG+F+ +  + + 
Sbjct: 1409 SLHNHKARVSLRENPSAPKGVPVWE-----KLQIGQILSTEVSNIQTYGMFLKVPKSKIS 1463

Query: 1361 GLCHVSELSED------HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
            GLCH +++ +D      H  +    Y  G K+K  I+ +D  K+++S  +K S    +A+
Sbjct: 1464 GLCHRTQIYDDPKDYEEHKKDWNKAYSEGMKLKASIISLDVSKKKVSFAIKPSVVNPEAN 1523

Query: 1415 NLQMSSEEESDEAIE-----------EVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLA 1463
            +   ++E+ S E I+           +  S+   SLL  S+V                  
Sbjct: 1524 S---AAEDLSPEVIQITDHDSDEDTDDDASHPEGSLLPTSNVD----------------- 1563

Query: 1464 QIESRASVPPLEVNLDDEQP--DMDNGIS--QNQGHTDEAKTIDEKNNRHAKKKEKEERE 1519
              E++    P  V++D  +P   +  G +   N+  TD  +  DE++       E     
Sbjct: 1564 --EAQTKAHPATVSIDFTEPCLPISTGFTWDANRSGTDNVEDQDEQSTDTDDAAE----- 1616

Query: 1520 QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1579
               R + E   +    ++ DE ERL++ SPNSS +WI+ +   +   D+ +AR  AERAL
Sbjct: 1617 ---RGSAEVTSDPTDQQSVDEIERLLKLSPNSSHLWIRLITIYIQKLDIPQARETAERAL 1673

Query: 1580 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1639
            + I+ REE EK  +W+A  NLEN YG   EE   + F+ A    D K V+L +  +Y  +
Sbjct: 1674 EAIHYREEGEKWKVWIALLNLENTYGT--EEQFRETFKEASARNDTKTVYLKVAEIYSES 1731

Query: 1640 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQE-GVQAVVQRALLSLPRHKHIKFI 1698
             + + ADE+  + +KK+  S KVW       LK  +     +++ R+L SLP+HKH+K I
Sbjct: 1732 GKTEKADEIYSQALKKYSRSSKVWTLYGGFCLKNNRPTDPSSLLSRSLKSLPQHKHVKTI 1791

Query: 1699 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD-VDLIRGLFERAIS 1757
            ++ A L+FK G  ++G ++FEG++  YPKR DLW++Y+D  I+ G  V+ IRGLF R   
Sbjct: 1792 AKFAQLQFKFGDPEKGHTLFEGLVDTYPKRLDLWNVYIDLHIKAGSTVETIRGLFNRMQK 1851

Query: 1758 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            L   PK+MK +FKK+L +E++ G++E    V Q+A +YV + ++
Sbjct: 1852 LKFNPKRMKSIFKKWLSFEQTHGDKESQGIVVQRAQDYVATLMS 1895



 Score =  127 bits (318), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 178/751 (23%), Positives = 305/751 (40%), Gaps = 134/751 (17%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG------LAR---------AADALDPILDNEIEANE 45
           +KL G++ +V   +L++ LP  L G      ++R         A D    +  N      
Sbjct: 237 IKLAGMIIQVRPLELIVALPSHLLGHVPITEISRQYTQRLTETAEDDEGSVASNSDSDRT 296

Query: 46  DNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKR---------KIWLSLRLSLLYKGLSL 93
           +N L     +F VGQ + C V++   +  +   R         K+ L++    +  G+  
Sbjct: 297 ENALKGLDEMFTVGQWIRCSVIKTATEIPKGSLRASPLVRSALKVTLTIDPVHINSGIDK 356

Query: 94  ETVQEGMVLTAYVKSIEDHGYILHFGLP---------------SFTGFLPRNNLAENSGI 138
             +Q GM LT  VKSIED GYI+  G+                + T F+   +  + +G+
Sbjct: 357 SDLQGGMTLTGAVKSIEDRGYIIDLGISVDSNVDSATSQASANNLTAFISFADATKATGV 416

Query: 139 DVKPGLLLQGVVRSIDRTR--------KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMM 190
           + +    LQ  V  +   R            +S +   +S+ V       +ID ++P  M
Sbjct: 417 NHQDEPSLQWEVGQVIWCRINKLSENGATCMVSVNAQDISRSVL--TAATNIDSILPLHM 474

Query: 191 VSTRVQSILE-NGVMLSFLTYFTGTVDIFHLQ-NTFPTTNWKNDYNQHKKVNARILF-VD 247
           VS  + S++   G+ ++ L +F  T+ + HL+ ++    +    +   +K+ AR+L+   
Sbjct: 475 VSCLITSVIPGQGLNVTLLGFFKATIQVPHLECHSTAGVDLSEKFKVGQKLRARVLWDTI 534

Query: 248 PTSRAVGLTLNPYLLHNR--------------AP--PSHVK-----------------VG 274
           P+   V L  N  LL  +               P  P+H++                 +G
Sbjct: 535 PSKNHVSLEGNESLLGPKIFSLSIFDHVVKLDTPGLPTHLQNGERTRCDKIDQLLLYPIG 594

Query: 275 DIYDQSKVVRVDRGL-----------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 323
             +   ++ RVD              GL ++I   PV+     TISD     + K    Y
Sbjct: 595 YTFQTVRIFRVDEEWGVYATCVNGEDGLPIEI-DPPVAFAHIATISDSFLSCLSKDSGPY 653

Query: 324 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 383
           K G+  + R+ G   ++G+    L+ S  E       D+  G ++ G +  + +   IV+
Sbjct: 654 KVGTTHKARVTGVSPVDGVLQLTLQPSVVEQAYMRSEDIPIGALMNGTIKKLTATNLIVR 713

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLA 441
             GG  A+    H S+ +   P KKF  GA++  RVL     R  I +T +KTLV++   
Sbjct: 714 IEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARVLYTNPDRDQIVLTLRKTLVRAD-E 772

Query: 442 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR--SELGLDPGCEPSSMYHVG 499
           I++SY  A+        ITK+E+    + F+   +G  PR  +E G     +P  ++  G
Sbjct: 773 IITSYESASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEAEAGYVESMKP--IFTPG 830

Query: 500 QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 559
           ++VK +I++     RRI  S      R + D+  KL    S V+DV    +  V  I   
Sbjct: 831 RLVKVKIINVDVEKRRILASV----KRSTSDEASKL----STVIDVGDQVSAFVTAIRNA 882

Query: 560 Y-----------------SKGTIPTEHLADHLE-HATVMKSVIKPGYEFDQLLVLDNESS 601
           +                  KG I  E LA   +     +K+ +K G E   L+V   +  
Sbjct: 883 FIQLDLRHINADPSSSEPVKGLISVEILAKKYDISPEALKNQLKAGDEVKDLIVHTKDKE 942

Query: 602 NLLLSAKYSLINSAQ-QLPSDASHIHPNSVV 631
             LL   Y   +  Q Q+      IH  ++V
Sbjct: 943 KELLIVGYKSASMPQEQMTGPIRFIHDKNLV 973



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            ED+    ++ G +K +T+    + +    DA V   + SD     PEK+F  G  V  RV
Sbjct: 690  EDIPIGALMNGTIKKLTATNLIVRIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARV 749

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
            L   P   ++ +TL+ +  R  +   I +  +  VG      I +VE   + I     + 
Sbjct: 750  LYTNPDRDQIVLTLRKTLVR--ADEIITSYESASVGTCAWAMITKVEEKFMLIEFFG-HT 806

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL   +E    +V++++ I+  G  VKVKI+ VD EKRRI   +K S
Sbjct: 807  KGLVPRAEAEAGYVESMKPIFTPGRLVKVKIINVDVEKRRILASVKRS 854



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 105/222 (47%), Gaps = 18/222 (8%)

Query: 493 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV------SEDDLVKLGSLVSGVVDVV 546
           S  Y VG   K R+    P    + L+  ++P+ V      SED  + +G+L++G +  +
Sbjct: 650 SGPYKVGTTHKARVTGVSPVDGVLQLT--LQPSVVEQAYMRSED--IPIGALMNGTIKKL 705

Query: 547 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 605
           T   ++V +  +G     +  +H +D ++HA   K    PG +   ++L  + +   ++L
Sbjct: 706 TATNLIVRI--EGGHDAVVWPDHYSD-VKHAHPEKK-FAPGAKVKARVLYTNPDRDQIVL 761

Query: 606 SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 665
           + + +L+ + + + S  S     +     +  + E    + F G   G  PR++A  G  
Sbjct: 762 TLRKTLVRADEIITSYES-ASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEAEAGYV 820

Query: 666 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
             +   +  G+ V+  I++V+ E  RI  S+K+S  +S +AS
Sbjct: 821 ESMKPIFTPGRLVKVKIINVDVEKRRILASVKRS--TSDEAS 860


>gi|38173705|gb|AAH38503.1| Pdcd11 protein [Mus musculus]
          Length = 394

 Score =  273 bits (697), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 138/282 (48%), Positives = 197/282 (69%), Gaps = 4/282 (1%)

Query: 1519 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1577
            E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AER
Sbjct: 108  EKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAER 167

Query: 1578 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1637
            AL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y 
Sbjct: 168  ALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYT 225

Query: 1638 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIK 1696
            ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +H+ 
Sbjct: 226  KSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVD 285

Query: 1697 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1756
             I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I
Sbjct: 286  VIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVI 345

Query: 1757 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 346  HLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 387


>gi|298708904|emb|CBJ30860.1| rRNA biogenesis protein rrp5 [Ectocarpus siliculosus]
          Length = 2344

 Score =  271 bits (694), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/294 (44%), Positives = 199/294 (67%), Gaps = 6/294 (2%)

Query: 1509 HAKKKEKEEREQEIR-AAEERLL--EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1565
             ++KK KE RE+E R AA ER L  E  AP T  ++ERL+ ++PN S +W+K+MAF LS+
Sbjct: 2050 RSRKKAKERREEEDRIAARERALQDEDAAPETAGDYERLLVATPNDSLLWVKFMAFKLSL 2109

Query: 1566 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1625
            ADVE AR++ ER L+ ++ REE E+ N+WV+  NLE++YG+     +  V +RA Q  +P
Sbjct: 2110 ADVEGARAVCERGLKAVSFREEQERFNLWVSLINLEHKYGS--RSTLKAVSERACQNSNP 2167

Query: 1626 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR-RVQRLLKQQQEGVQAVVQR 1684
            KKV+L +  ++E+ ++++  +E+    +KKF+HS KVW+  ++ RL +    G +  ++R
Sbjct: 2168 KKVYLHMAEMHEKAQESEECEEVFQAAVKKFRHSQKVWVAYQLSRLKRGDDAGAREALKR 2227

Query: 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
            +L SL RHKH+  IS+ A  EF++G  +RGRS+FEG+++ YPKR DLW++Y D+E++ GD
Sbjct: 2228 SLQSLARHKHVSVISRFAQNEFEHGSVERGRSVFEGLMASYPKRLDLWNVYFDKEVKAGD 2287

Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            +   R L ER   +    K+MK +FKKYL++E   G+E R+  VK KA EYV S
Sbjct: 2288 LRAARNLLERLTGMDFNAKRMKGVFKKYLQFEMEHGDEARVNAVKAKATEYVAS 2341



 Score =  206 bits (525), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 156/482 (32%), Positives = 226/482 (46%), Gaps = 71/482 (14%)

Query: 304 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 363
           AYV IS +++E V  +EK YK G  VR R+ G   +EG A   L+ S     V  + D+K
Sbjct: 511 AYVHISRISDERVEHVEKSYKPGQKVRCRVTGSSLVEGWAAASLRPSVLSAAVLRYQDLK 570

Query: 364 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 423
           PG +V+G+V AV++FG +V+   GV+AL P  H+ +  +  P  +FKVGA +  RVL V 
Sbjct: 571 PGSLVEGEVAAVEAFGLLVKLGEGVRALVPKNHLGDVGVKNPKARFKVGARVKGRVLTVD 630

Query: 424 --SKRITVTHKKTLVKSKLAILSSYAEATDRLITH--GWITKIEKHGCFVRFYNGVQGFA 479
             S + T+T K+++VK K  ++S+Y EA +R  T   G++TK+   G  V FY  V G  
Sbjct: 631 AGSSKSTLTLKRSMVKDKREVISTYTEAKEREGTACTGFVTKVAPFGLHVSFYGNVFGLL 690

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFM-----MKPTRVSED 530
           P   L      +PS  + VGQVV C + S    + P    ++L        M  T  +E+
Sbjct: 691 PSKALTKHGIQDPSEAFAVGQVVGCVVRSCDVTTYPPKLALSLDVAGKTEEMGGTGAAEE 750

Query: 531 D-----------LVKLGSLVSGVVDV-----------------VTPN------------- 549
           D               G  VSGVV                    TP              
Sbjct: 751 DESDGEGGAASCPFSPGDTVSGVVSANQDKEGKVVVDLNLPADTTPEDTSTKKKKKKSQA 810

Query: 550 -AVVVYVIAKGYSKGTIPTEHLADHLE-HATVMKSVIKPGYEFDQLLVLDNESSN----- 602
               V   A G+    +P  HL DH       + + + PG   DQLLVL+ +        
Sbjct: 811 KQAAVATTAPGF----LPHPHLGDHASVCGQTLAAQLTPGTVIDQLLVLEVDKMGVPMVT 866

Query: 603 ---LLLSA-KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 658
              LLLSA   S  +    +P  AS++ P  ++ GYVC +   G FVRFLGR T   PRS
Sbjct: 867 LKPLLLSAVARSGEDKEAFVPGAASNVSPGDLIAGYVCRVESFGVFVRFLGRFTALCPRS 926

Query: 659 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 718
            A D    D S  +  G S R  +  V+ +TGR+ ++L ++   ++ A +++   LL E 
Sbjct: 927 MAADRMVEDPSGMFEEGDSARCVVQRVDEDTGRVVVTLDRTTVPTSPALYLRS--LLSET 984

Query: 719 IA 720
            A
Sbjct: 985 FA 986



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 165/325 (50%), Gaps = 45/325 (13%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE------------------- 45
           GVV ++NE D+V+ LP  L G+ R  +  D        A                     
Sbjct: 143 GVVFKINEHDMVVSLPSSLTGVVRRQEVSDYFHQKAASAKNTGSNRAGGRGRYFDESHAG 202

Query: 46  DNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
           +  L  +F  GQ+V C ++ L    KE   R I LSLR S++ KGLSL  + +G  +   
Sbjct: 203 EKPLTHLFREGQVVRCAIISL---AKEAKGRHIELSLRASVVNKGLSLSQLTKGSGVYGS 259

Query: 106 VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 165
           V S EDHGY++  GL   T FLP+ +  ++    ++PG  ++ V++++    + V L++D
Sbjct: 260 VASAEDHGYVVTLGLDGVTAFLPKKDGPKDG---LEPGQPVEAVIQTVKAAARTVTLTAD 316

Query: 166 PDTVSKCVTKDLKGISIDL--LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 223
           P  VS  VT   +G S DL  L PGM+V   V S+L NG+++SFL YF G VD     N 
Sbjct: 317 PSLVSSAVT---QGTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVD----HNN 369

Query: 224 FP---------TTNWKNDYNQH-KKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV 273
            P            W+  +    + V AR+L VD  ++A+ LTL P+L+  R P      
Sbjct: 370 MPLVSGDGKDEPKGWRPLFRPGPEPVRARVLLVDYVNKAIRLTLRPHLMEMRTPSGLPPT 429

Query: 274 GDIYDQSKVVRVDRGLGLLLDIPST 298
           G +  + +VVRVD  LGLLL +PST
Sbjct: 430 GALL-EGEVVRVDPALGLLLTVPST 453



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 130/504 (25%), Positives = 222/504 (44%), Gaps = 88/504 (17%)

Query: 974  FSNFKIGQTVTARII--AKSNKPDMKKSFLWE------------LSIKPSMLTVS----- 1014
               F +GQ +TAR++      + D K  F++             ++I  S L  +     
Sbjct: 1427 LEKFHVGQVLTARVLHFEDMTQKDPKSDFVFRLLELGLLDGDGTVTIDQSGLGEAEGEGE 1486

Query: 1015 ---EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL----DSAYEPS 1067
                + +   + EC    G+   G + +V     L+++S  ++  + +     D+     
Sbjct: 1487 EAVSVPAVPWWGECPPKAGEVHRGVITEVAEHGLLVSLSNSVRGLVPLAKLSSDATVTAK 1546

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV---------DISNDN 1118
               EF  R  +G  V    +   + + +L LV  P +D + D  +         D+ +  
Sbjct: 1547 NFGEFFER-GMGLRVLVRRVEEERRRLILSLVGVPDRDTLPDSALPAMSPGFQADVKSKA 1605

Query: 1119 MQTFIHE----GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
             +    E    GD+V GR+   +       V +      R+    +  +CV++ LS  + 
Sbjct: 1606 ARNLTSESPDAGDVVEGRVDLTVKAWSPPCVMV------RLDGGCIGRVCVTE-LSEEEA 1658

Query: 1175 GQFDPLSGYDEGQFVKCKVLEI-----------SRTVRGTFH-------------VELSL 1210
             + +P+    +G  VKC+VL             SR  R                 VELSL
Sbjct: 1659 WKDNPVGRIKDGARVKCRVLPPLPKRSTEAQSKSRRRRSGDGDEDDEEGDGYMGPVELSL 1718

Query: 1211 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIE-DLSPNM--IVQGYVKNVTSKGCFIMLSRK 1267
            R      S               K  E I+ D +P +    + YV   +  GCF++L+  
Sbjct: 1719 RPCRVEASKN-------------KRKEAIKRDAAPKVGSTAKCYVVATSKSGCFVILNGG 1765

Query: 1268 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1327
            +  +VLL +LSD +V  P +EFP GKLVAG+VL+ E  + RV ++LK SD        + 
Sbjct: 1766 VSGRVLLKHLSDRFVSDPAQEFPAGKLVAGKVLAQEKETGRVSLSLKPSDVVGGEGGALT 1825

Query: 1328 NLSN-LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
              S  L  G  V G +  V+ +G+FI I ++ + G+CH SE +++ +D++  +Y  G+ V
Sbjct: 1826 WSSEILKPGLKVKGTVDTVKDFGVFIQIHDSKVRGMCHRSEAADETIDDLTQVYDEGDLV 1885

Query: 1387 KVKILKVDKEKRRISLGMKSSYFK 1410
            K  +LKV+K  +R+SLG+K+SYF+
Sbjct: 1886 KAVVLKVNKNNKRVSLGLKASYFE 1909



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 28/248 (11%)

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            Y  GQ V+C+V   S  V G      SLR S+          LS  V        + +DL
Sbjct: 530  YKPGQKVRCRVTG-SSLVEG--WAAASLRPSV----------LSAAV-------LRYQDL 569

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
             P  +V+G V  V + G  + L   + A V  ++L D  V++P+  F +G  V GRVL+V
Sbjct: 570  KPGSLVEGEVAAVEAFGLLVKLGEGVRALVPKNHLGDVGVKNPKARFKVGARVKGRVLTV 629

Query: 1303 EPLSKRVEVTLKTS---DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
            +  S +  +TLK S   D R    +     +    G    G + +V  +GL ++    N+
Sbjct: 630  DAGSSKSTLTLKRSMVKDKREVISTYTE--AKEREGTACTGFVTKVAPFGLHVSFYG-NV 686

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVK--VKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
             GL     L++  + +    +  G+ V   V+   V     +++L +  +    +     
Sbjct: 687  FGLLPSKALTKHGIQDPSEAFAVGQVVGCVVRSCDVTTYPPKLALSLDVAGKTEEMGGTG 746

Query: 1418 MSSEEESD 1425
             + E+ESD
Sbjct: 747  AAEEDESD 754


>gi|26325946|dbj|BAB23064.2| unnamed protein product [Mus musculus]
          Length = 276

 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 133/265 (50%), Positives = 188/265 (70%), Gaps = 3/265 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 7    PESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 66

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            VA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ K A EL  +M+K
Sbjct: 67   VALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKYKEAGELYNRMLK 124

Query: 1655 KFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            +F+    VW++    +L + Q G    V+QRAL  LP  +H+  I + A LEF+ G  +R
Sbjct: 125  RFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVER 184

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
             +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL
Sbjct: 185  AKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHLSLAPKRMKFFFKRYL 244

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVES 1798
            +YEK  G E+ ++ VK KA+EYVE+
Sbjct: 245  DYEKQHGTEKDVQAVKAKALEYVEA 269


>gi|196015127|ref|XP_002117421.1| hypothetical protein TRIADDRAFT_32523 [Trichoplax adhaerens]
 gi|190579950|gb|EDV20037.1| hypothetical protein TRIADDRAFT_32523 [Trichoplax adhaerens]
          Length = 272

 Score =  271 bits (692), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 132/269 (49%), Positives = 192/269 (71%), Gaps = 3/269 (1%)

Query: 1533 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1592
            +A  TPD+F+RLV S PN+S  W++YMA+ L  A+++K+R +AERAL+TI+ RE    LN
Sbjct: 2    NALETPDDFDRLVISEPNNSSGWLQYMAYYLQTAEIDKSRDVAERALKTISFRESQHLLN 61

Query: 1593 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1652
            IW+A  NLEN YG   +E + KVF+RA+Q  DPK V   L  +Y R+++++LAD+L   M
Sbjct: 62   IWIAMMNLENLYGT--QETLTKVFERAVQRNDPKDVFFHLSRIYIRSDKHELADKLFQNM 119

Query: 1653 IKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1711
            IK+F  S KVW+R  Q L + ++ EG + ++QR+L SLP+ KH+  I + A  EFK G  
Sbjct: 120  IKRFNTSKKVWIRYGQFLFEIKKFEGARKILQRSLKSLPKRKHLDTIVKFAQFEFKYGDH 179

Query: 1712 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771
             RG ++FE +LS YPKRTDLWS+Y+D  I++GD++ +R LFE+ + ++L  KK+KFLFK+
Sbjct: 180  ARGATIFESVLSNYPKRTDLWSVYIDMVIKVGDIEQVRKLFEKVVKINLSSKKIKFLFKR 239

Query: 1772 YLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
            Y+E+E   G EE +E+VKQ A++YV S L
Sbjct: 240  YMEFESKYGNEESVEHVKQLAVDYVSSQL 268


>gi|428178387|gb|EKX47262.1| hypothetical protein GUITHDRAFT_69529 [Guillardia theta CCMP2712]
          Length = 306

 Score =  269 bits (687), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 134/279 (48%), Positives = 195/279 (69%), Gaps = 4/279 (1%)

Query: 1522 IRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            +R  EE LL+ +  P T +EFER+V SSP+SS+VWIKYMAF L M +++KAR IA+RAL+
Sbjct: 27   LREKEEALLDPEKVPETAEEFERMVLSSPSSSYVWIKYMAFFLEMTEIDKAREIADRALK 86

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            TI+ REE EK N+WVA  NLEN YG    E+++ VF++A +  D KK+H+ LLG++ER  
Sbjct: 87   TISFREEQEKFNVWVARLNLENLYGT--RESLMSVFEQACKLNDSKKMHMQLLGIFERGG 144

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQ-RLLKQQQEGVQAVVQRALLSLPRHKHIKFIS 1699
              ++ ++    + +KF+ SCKVWLR    +L     E    +++RAL ++P+ KH+K I 
Sbjct: 145  DAQVTEQFFKTLTRKFRKSCKVWLRYCTFKLRGAHPEAAGRMLERALEAIPKRKHVKLIH 204

Query: 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759
            + A +E+K G A+RGR++ EG++   PKR DLWS+++D E++ G V+  R L ERAI+L 
Sbjct: 205  KFATMEYKLGSAERGRTLMEGVVVSSPKRIDLWSVFVDLELKSGHVEAARQLLERAITLK 264

Query: 1760 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            L  ++ KFLFKK LE EK+ G+ ER+  VK+KA E+VES
Sbjct: 265  LKGRQAKFLFKKMLELEKTHGDAERVAEVKRKAREWVES 303


>gi|141795595|gb|AAI39595.1| Pdcd11 protein [Danio rerio]
          Length = 932

 Score =  269 bits (687), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 219/833 (26%), Positives = 422/833 (50%), Gaps = 48/833 (5%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE--DNLLP--TIFHV 55
           + G V EV++ ++V+ LP GL G   +    DA   IL+++++ ++  + ++P   +F  
Sbjct: 81  MLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAYTNILNDKLDTDDGLEEVVPLSKLFTP 140

Query: 56  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
           G L+ C+V  LD  K+  G   + LS+    + K L+   ++  M L+  V+S+EDHGY+
Sbjct: 141 GMLIRCVVSSLDSAKE--GHISLKLSINPKDVNKALNSVALKPAMTLSGCVESVEDHGYL 198

Query: 116 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 175
           +  G+     FLP+   + +S  D+  G  +  ++  +  + +VV LS +P  + K   +
Sbjct: 199 VDIGIGGSKAFLPKK--STSSKQDLYVGQYVLVLIEDVKDSGRVVRLSQNPQALVKACAE 256

Query: 176 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 235
             +G ++D L+PG++V   V+ +  +G++++FL+ FTG VD  HL     +T     Y++
Sbjct: 257 TKQGWTLDNLLPGLLVHGCVKRVTPHGLIVTFLSSFTGVVDFLHLDEDKEST-----YSK 311

Query: 236 HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV--------KVGDIYDQSKVVRVDR 287
            +++ ARIL+V P++R VGL+L  +LL    PP           +VG++    ++  +  
Sbjct: 312 GQEILARILYVQPSTRQVGLSLRSHLL----PPGGAVLDLHFSERVGEVVQGCQMTSLHH 367

Query: 288 GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV-RILGFRHLEGLATGI 346
             G L+ +      + A+V   ++ +E   +L+  +       + RI+ +  +E +    
Sbjct: 368 YSGALMKMLD---GSRAFVH-RNLLKEPKEELDTNHLMSQSQHILRIINYSPIEQIYQAT 423

Query: 347 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 406
           L+ S+ E   F+  D+K G +V+G VI +   G  V+    ++ + P  H+++  +  P 
Sbjct: 424 LRWSSIETPFFSCQDIKVGQIVEGTVIDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPE 483

Query: 407 KKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
           KKF  G ++  RVL V++++  + +T KK LV+S L I  SY++A    I+HG++  I++
Sbjct: 484 KKFYPGLKVKCRVLSVEAQKKLLILTRKKALVESTLPIFQSYSDARPGRISHGFVVCIKE 543

Query: 465 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM-MK 523
            GC VRFY  V+G  P  EL  +    P  ++ VGQVVK +++      + + LSF  + 
Sbjct: 544 FGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKSVT 603

Query: 524 PTRVSEDDLVKLGSLVSGVVDVVTP----NAVVVYVIAKGYSKGTIPTEHLADHLEHATV 579
              V E+ + K   +V  +VD        N + V +I +   +  +PT HL+DH+ +   
Sbjct: 604 EEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEVSIIPEEV-QAFLPTTHLSDHVTNCLP 662

Query: 580 MKSVIKPGYEFDQLLVLDN-ESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVC 636
           +   ++ G     L+ L N +   ++L+ K  L    +   +P + S +     + G+V 
Sbjct: 663 LWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLKAYIEDGAIPKNFSELQVGMQMVGWVK 722

Query: 637 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
           NI+  G F+ F   + G AP +   D    + S  + + Q+V + + +++ E  R  +SL
Sbjct: 723 NIMPYGVFISFPYGVFGLAPIANMGDQFIKETSGIFDIDQTVVAKVTNLDEEKQRFLVSL 782

Query: 697 KQSCCSSTDASFMQEHFL-LEEK--IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 753
           K S  S ++  F       L+E+  I+ +++ + +   L  +    +G  ++  V ++ +
Sbjct: 783 KLSELSLSENEFHTRLIQGLKERRNISEMRAGRGDSDVLWKLSALTVGDQMKMIVGDTTE 842

Query: 754 FG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
            G V+++ ++ S V    + +   G  +  G  + A IL +   +  V +SL+
Sbjct: 843 DGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKLNAVILHIDFVKSQVHVSLR 895



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 2/167 (1%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            +D+    IV+G V ++   G ++ +   +   +   +L+D  +++PEK+F  G  V  RV
Sbjct: 437  QDIKVGQIVEGTVIDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRV 496

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
            LSVE   K + +T K +    ++     + S+   G I  G +  ++ +G  +     ++
Sbjct: 497  LSVEAQKKLLILTRKKALVE-STLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYE-DV 554

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
             GL  + EL+ + V N E ++  G+ VKVK+LK D+EK+ + L  KS
Sbjct: 555  KGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKS 601



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 112/513 (21%), Positives = 207/513 (40%), Gaps = 78/513 (15%)

Query: 884  GQSVIATVMALPSSSTAGRL----LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 939
            GQ V+  +  +  S    RL      L+KA +ET     K+     +   G LV   +  
Sbjct: 224  GQYVLVLIEDVKDSGRVVRLSQNPQALVKACAET-----KQGWTLDNLLPGLLVHGCVKR 278

Query: 940  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 999
            + P  L + F   F G +    +++DK        S +  GQ + ARI+    +P  ++ 
Sbjct: 279  VTPHGLIVTFLSSFTGVVDFLHLDEDKE-------STYSKGQEILARILYV--QPSTRQV 329

Query: 1000 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1059
                LS++  +L        L F E    +G+ V G          + ++  +  A + +
Sbjct: 330  ---GLSLRSHLLPPGGAVLDLHFSE---RVGEVVQG--------CQMTSLHHYSGALMKM 375

Query: 1060 LDSA---YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1116
            LD +      + L+E +         T H++S  + + +LR++     + I   T+  S+
Sbjct: 376  LDGSRAFVHRNLLKEPKEELD-----TNHLMS--QSQHILRIINYSPIEQIYQATLRWSS 428

Query: 1117 DNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
                 F    I  G IV G +  +     G+ V+IG H+ G +    L ++ + +P    
Sbjct: 429  IETPFFSCQDIKVGQIVEGTVIDLQKH--GVYVRIGEHIRGMIPRIHLADVTLKNP---- 482

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
             E +F P      G  VKC+VL +    +      L+ + +L              V++ 
Sbjct: 483  -EKKFYP------GLKVKCRVLSVEAQKKLLI---LTRKKAL--------------VEST 518

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
                +   D  P  I  G+V  +   GC +     +   V +  L+   V +PE+ F +G
Sbjct: 519  LPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVG 578

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            ++V  +VL  +   K + ++ K+       + +I    +  VG +V  ++ R    GL +
Sbjct: 579  QVVKVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKF-DFIVGKMVDARVCRKVLNGLEV 637

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1385
            +I    +      + LS DHV N   ++ A E+
Sbjct: 638  SIIPEEVQAFLPTTHLS-DHVTNCLPLWMALEE 669



 Score = 47.4 bits (111), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 153/385 (39%), Gaps = 47/385 (12%)

Query: 1022 FEEC-DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1080
            F  C D+ +GQ V G V  +      + I  H++  +  +  A     L+  +++F+ G 
Sbjct: 433  FFSCQDIKVGQIVEGTVIDLQKHGVYVRIGEHIRGMIPRIHLA--DVTLKNPEKKFYPGL 490

Query: 1081 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK---IL 1137
             V   VLS+  +KKLL L  +     + + T+ I       F    D   GRIS    + 
Sbjct: 491  KVKCRVLSVEAQKKLLILTRK---KALVESTLPI-------FQSYSDARPGRISHGFVVC 540

Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
                G +V+    + G V   EL    V++P    +E  F        GQ VK KVL+  
Sbjct: 541  IKEFGCIVRFYEDVKGLVPMQELTTETVTNP----EELFF-------VGQVVKVKVLKCD 589

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1257
               +    + LS +S              T+ D   + + K + +   M+     + V +
Sbjct: 590  EEKK---MLRLSFKSV-------------TEEDVREEQIAKFDFIVGKMVDARVCRKVLN 633

Query: 1258 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAGRVLSVEPLSKRVEVTLKT 1315
                 ++  ++ A +  ++LSD           +  G  +   +       K + +T K 
Sbjct: 634  GLEVSIIPEEVQAFLPTTHLSDHVTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKP 693

Query: 1316 SDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
                      I  N S L VG  ++G +K +  YG+FI+     + GL  ++ + +  + 
Sbjct: 694  HLKAYIEDGAIPKNFSELQVGMQMVGWVKNIMPYGVFISFP-YGVFGLAPIANMGDQFIK 752

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRR 1399
                I+   + V  K+  +D+EK+R
Sbjct: 753  ETSGIFDIDQTVVAKVTNLDEEKQR 777



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 144/349 (41%), Gaps = 58/349 (16%)

Query: 1101 RPFQDGISDKTVDISNDNMQTFIHEGDI-VGGRISKILSGVGGLVVQIG-PHLYGRVHFT 1158
            +P +  + ++ + ++       +H  D+ VG  +   +  V    V +G P   G V + 
Sbjct: 48   KPKKQKVDEENIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFEVVVGLPS--GLVGYL 105

Query: 1159 ELKNIC------VSDPLSGYDEG--QFDPLSG-YDEGQFVKCKVLEISRTVRGTFHVELS 1209
             + NIC      ++D L   D+G  +  PLS  +  G  ++C V  +     G  H+ L 
Sbjct: 106  PICNICDAYTNILNDKLD-TDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKEG--HISLK 162

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
            L        S N  D++  +++          L P M + G V++V   G  + +     
Sbjct: 163  L--------SINPKDVNKALNSVA--------LKPAMTLSGCVESVEDHGYLVDIGIG-G 205

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLV---------AGRVLSVEPLSKRVEVTLKTSDSRT 1320
            +K  L   S     S +++  +G+ V         +GRV+    LS+  +  +K      
Sbjct: 206  SKAFLPKKS----TSSKQDLYVGQYVLVLIEDVKDSGRVVR---LSQNPQALVKAC---- 254

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
            A   +   L NL  G +V G +KRV  +GL +T   ++  G+     L ED     E+ Y
Sbjct: 255  AETKQGWTLDNLLPGLLVHGCVKRVTPHGLIVTFL-SSFTGVVDFLHLDEDK----ESTY 309

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1429
              G+++  +IL V    R++ L ++S         L +   E   E ++
Sbjct: 310  SKGQEILARILYVQPSTRQVGLSLRSHLLPPGGAVLDLHFSERVGEVVQ 358


>gi|260841321|ref|XP_002613865.1| hypothetical protein BRAFLDRAFT_119888 [Branchiostoma floridae]
 gi|229299255|gb|EEN69874.1| hypothetical protein BRAFLDRAFT_119888 [Branchiostoma floridae]
          Length = 1638

 Score =  268 bits (685), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/282 (46%), Positives = 200/282 (70%), Gaps = 4/282 (1%)

Query: 1519 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1577
            ++E+  AE  LL++D  P++ D+F+RLV SSP+SS +W++YMAF L   +++KAR++AER
Sbjct: 1351 DKELYKAELALLDEDRPPQSADDFDRLVLSSPDSSILWLRYMAFHLHSTEIDKARTVAER 1410

Query: 1578 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1637
            AL+TI+ REE EKLN+WVA  NLEN YG   EE+++ VFQRALQ+ +   +   L+ +Y+
Sbjct: 1411 ALKTISFREEKEKLNVWVALMNLENMYGT--EESLMTVFQRALQHNEALTIFKQLVNIYK 1468

Query: 1638 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIK 1696
            RT + + AD+L   M+K+F+ +  VW+   Q L++ ++ E   +++QR+  SL +  H++
Sbjct: 1469 RTGKTQEADQLYGTMVKRFRGNKDVWIDYGQFLMENKRAEAAHSLMQRSFKSLDKQDHVQ 1528

Query: 1697 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1756
             IS+ A++EFK G  +RGR+MFE ILS YPK+  +WS+YL+  I+ GD+D +R  F+R  
Sbjct: 1529 VISRFAVMEFKLGDVERGRTMFENILSNYPKQVSIWSVYLEMLIKTGDMDQVRLAFDRVT 1588

Query: 1757 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            +L L  K MK  FK+YLE+EK  G++  +  VK+KAMEYVE+
Sbjct: 1589 ALHLSTKNMKGFFKRYLEFEKKHGDDNTVSAVKRKAMEYVEA 1630



 Score =  245 bits (626), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 190/665 (28%), Positives = 325/665 (48%), Gaps = 67/665 (10%)

Query: 52  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 111
           ++  G +V C++ ++   K   G  +I LSL    + +GL   T++ GMV  +  + ++ 
Sbjct: 87  LYQAGAMVRCVIAEVVTSKS--GHPRILLSLNPRDVNQGLQGTTLKPGMVGISPFQGLKY 144

Query: 112 HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 171
             Y     L                    +P L L   VRS+    + V L+  P  + K
Sbjct: 145 KMYTAPMRL-------------------AQPLLCL---VRSVVSGGRSVNLTVSPTLLQK 182

Query: 172 CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 231
            V K+   +++D L PG +V   V S+  +G++  FL  FTG+V   HL      T    
Sbjct: 183 AVAKEDLDLTLDTLTPGTLVEATVTSVQNHGILAEFLG-FTGSVSRVHL-----PTKRAE 236

Query: 232 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP------PSHVKVGDIYDQSKVVRV 285
            Y + ++V A IL++ PT++ VGL+    L   R        P+   +G +Y ++ VV V
Sbjct: 237 PYRKGQRVKACILYIHPTTKTVGLSFQSRLWDGRTLVDVQELPA---IGTVYKKAPVVHV 293

Query: 286 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
             G+G+ + + +    TP +  +S ++++ V  +E  +K G+    R++    L+G A  
Sbjct: 294 WSGIGVTMKLSA---ETPGFAAVSQLSDQPVESIENTFKPGTQHSCRVINCSPLDGQAIV 350

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
            LK S  E       D+KPG VV+GK+ +V S+G  V     V+ +    H+++  +  P
Sbjct: 351 SLKKSVIEQPFLRLQDLKPGQVVEGKITSVQSYGITVSLSNYVRGVVSKIHLADIILKNP 410

Query: 406 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
            KKF  G  +  RVL V +  +++ +THK+TL+ SKL I++SY  A      HG++  ++
Sbjct: 411 AKKFNEGDMIKCRVLNVATAGRQLALTHKRTLLTSKLPIMASYQAAKPGTWAHGFVLSVQ 470

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
             GC V FYN V+G  P+ E+  +   +P  M++ GQVVKCR+MS  PA  ++ +S  +K
Sbjct: 471 DFGCIVMFYNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCNPALEKLTVS--LK 528

Query: 524 P----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 579
           P    T V+ D   ++G +V+  V  V P+++ V V     + G +P  HL+DH E+ ++
Sbjct: 529 PEKSGTPVAAD--FEVGKMVNVEVTEVKPDSLGVKVQGSD-TPGFLPMMHLSDHQENCSL 585

Query: 580 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN--SAQQLPSDASHIHPNSVVHGYVCN 637
           + S    G      +   + ++  +++ K SL    ++ Q+    S +  + V+ G+V  
Sbjct: 586 LLSRYSVGDVIQDAMYCCSRATGSMVTLKPSLKKAVTSGQVVETFSDLRTDRVLRGWVRT 645

Query: 638 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG--------QSVRSNILDVNSET 689
           +   G FV F G   G AP++       A  SKT+  G         SVR   LD+ +  
Sbjct: 646 VKPFGVFVEFPGGWVGLAPKADLT----AVASKTHCQGTNLNVGDSTSVRILHLDIPNNI 701

Query: 690 GRITL 694
             ++L
Sbjct: 702 AEVSL 706



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 202/990 (20%), Positives = 359/990 (36%), Gaps = 185/990 (18%)

Query: 409  FKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 466
            FK G +   RV+       +  V+ KK++++     L          +  G IT ++ +G
Sbjct: 328  FKPGTQHSCRVINCSPLDGQAIVSLKKSVIEQPFLRLQDLKPGQ---VVEGKITSVQSYG 384

Query: 467  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 526
              V   N V+G   +  L       P+  ++ G ++KCR+++   A R+  L+   K T 
Sbjct: 385  ITVSLSNYVRGVVSKIHLADIILKNPAKKFNEGDMIKCRVLNVATAGRQ--LALTHKRTL 442

Query: 527  VSED-------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH--- 576
            ++            K G+   G V  V     +V        KG +P   +    +    
Sbjct: 443  LTSKLPIMASYQAAKPGTWAHGFVLSVQDFGCIVMFYNN--VKGLLPKREMTQEAQEDPR 500

Query: 577  ------ATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 629
                    V   V+      ++L V L  E S   ++A + +    + +  + + + P+S
Sbjct: 501  KMFYKGQVVKCRVMSCNPALEKLTVSLKPEKSGTPVAADFEV---GKMVNVEVTEVKPDS 557

Query: 630  VVHGYVCNIIETGCFVRFLGRLT-GFAPRSKAVDGQR--ADLSKTYYVGQSVRSNILDVN 686
            +              V+  G  T GF P     D Q   + L   Y VG  ++  +    
Sbjct: 558  L-------------GVKVQGSDTPGFLPMMHLSDHQENCSLLLSRYSVGDVIQDAMY--- 601

Query: 687  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 746
                         CCS    S +     L++ +        +G  ++         V+ G
Sbjct: 602  -------------CCSRATGSMVTLKPSLKKAVT-------SGQVVETFSDLRTDRVLRG 641

Query: 747  KVHESNDFGVVVSF-------EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 799
             V     FGV V F          +D+    +     G  +  G      IL +     +
Sbjct: 642  WVRTVKPFGVFVEFPGGWVGLAPKADLTAVASKTHCQGTNLNVGDSTSVRILHLDIPNNI 701

Query: 800  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL--- 856
             ++SL++  +++  E    +  +  +               +  V   K  YL++ +   
Sbjct: 702  AEVSLRSDLLEQATEGKKIKMKKGGE--------------FSCTVLDAKAKYLLVGINGS 747

Query: 857  -----------PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL 905
                       P +  ++G        T K    +     SVIA  M     +   +   
Sbjct: 748  GALAYVTRKWHPNHGSNVGMGDAQIGETSKVRVVRITQSGSVIA--MPAGKKTEGKKEGA 805

Query: 906  LLKAISETETSSSKRAKKKS---------------SYDVGSLVQAEITEIKPLELRLKFG 950
              KA    E  + KR + +S                  +G++V   +       L +K  
Sbjct: 806  EHKAAKRREEKNRKRKRDESETREETEADGQNPAEQLQLGAIVNVVVVATARDHLEVKIT 865

Query: 951  IGFH---GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK--------PDMKKS 999
               H   G +HI+EV DD     E   +   +G  V  R+I  S+K        P  +  
Sbjct: 866  GQGHRQEGIVHISEVKDDVREG-EAPMAKLLVGSIVPGRVIGISHKKVKSLKSLPFSRPG 924

Query: 1000 F---LWELSIKPSMLTVSEIGSKLLFEE----CDV-SIGQRVTGYVYKVDNEWALLTISR 1051
            F   ++ +S++ S++   +   K L  +     DV    Q+V  Y+  + +    +++S 
Sbjct: 925  FEEVVYNVSLRESVVKADDKFKKFLLPDEKLRTDVYKEDQKVMFYLQSIQDSHVHVSVSP 984

Query: 1052 HLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1111
             ++ +L +L  +    +L+     F    A  G + SI++E   L L             
Sbjct: 985  GVQGKLDLLSCSDNVEDLKNPPAMFKPKCAYLGTITSIDRESSTLHL------------- 1031

Query: 1112 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1171
               S     T +  G +V  +++K + G   L +  G    G  + T+L     SD  S 
Sbjct: 1032 ---SRLGKATKLAPGLVVNAQVAKKVPGKLLLSLPFGGK--GFANLTDL-----SDSYSS 1081

Query: 1172 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1231
                  +PLS +   Q ++C VLE S       HV +SLR S  G      +D       
Sbjct: 1082 ------NPLSTFKVNQLLRCCVLECS----SKRHVRVSLRPSKIGGKVRKIND------- 1124

Query: 1232 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KE 1288
                 E +ED+    IV+GYV++    G F  LS K+  +V   + +  +V   +   K 
Sbjct: 1125 --PDYETVEDIVEGDIVRGYVEDCNKHGVFAALSHKVKGRVQYKHATSYFVRKQDELKKF 1182

Query: 1289 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            FP+GKLV  +VL V   S  +E++L   D+
Sbjct: 1183 FPVGKLVTAKVLEVSYKSSHLELSLLEKDT 1212



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 163/371 (43%), Gaps = 37/371 (9%)

Query: 344 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFE 401
           T + KA A E L  T   + PG +V+  V +V + G + +F G  G  +   LP     E
Sbjct: 178 TLLQKAVAKEDLDLTLDTLTPGTLVEATVTSVQNHGILAEFLGFTGSVSRVHLP-TKRAE 236

Query: 402 IVKPGKKFKVGAELVF---RVLGVKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITH 456
             + G++ K     +    + +G+ S +  +   +TLV  +   AI + Y +A    + H
Sbjct: 237 PYRKGQRVKACILYIHPTTKTVGL-SFQSRLWDGRTLVDVQELPAIGTVYKKAP---VVH 292

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP----A 512
            W       G  ++      GFA  S+L   P     + +  G    CR+++  P    A
Sbjct: 293 VW----SGIGVTMKLSAETPGFAAVSQLSDQPVESIENTFKPGTQHSCRVINCSPLDGQA 348

Query: 513 SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 572
              +  S + +P    +D  +K G +V G +  V    + V +    Y +G +   HLAD
Sbjct: 349 IVSLKKSVIEQPFLRLQD--LKPGQVVEGKITSVQSYGITVSL--SNYVRGVVSKIHLAD 404

Query: 573 HLEHATVMKSVIKPGYEFD----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IH 626
                 ++K+  K   E D    ++L +      L L+ K +L+ S  +LP  AS+    
Sbjct: 405 -----IILKNPAKKFNEGDMIKCRVLNVATAGRQLALTHKRTLLTS--KLPIMASYQAAK 457

Query: 627 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 686
           P +  HG+V ++ + GC V F   + G  P+ +     + D  K +Y GQ V+  ++  N
Sbjct: 458 PGTWAHGFVLSVQDFGCIVMFYNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCN 517

Query: 687 SETGRITLSLK 697
               ++T+SLK
Sbjct: 518 PALEKLTVSLK 528



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 106/255 (41%), Gaps = 41/255 (16%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            +  G +V G+I+ + S   G+ V +  ++ G V    L +I + +P   ++EG       
Sbjct: 367  LKPGQVVEGKITSVQSY--GITVSLSNYVRGVVSKIHLADIILKNPAKKFNEGDM----- 419

Query: 1183 YDEGQFVKCKVLEISRTVR--GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  +KC+VL ++   R     H    L S L  M+S  ++                 
Sbjct: 420  ------IKCRVLNVATAGRQLALTHKRTLLTSKLPIMASYQAA----------------- 456

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
               P     G+V +V   GC +M    +   +    ++    E P K F  G++V  RV+
Sbjct: 457  --KPGTWAHGFVLSVQDFGCIVMFYNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVM 514

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            S  P  +++ V+LK   S T         ++  VG +V  ++  V+   L + ++ ++  
Sbjct: 515  SCNPALEKLTVSLKPEKSGTPVA------ADFEVGKMVNVEVTEVKPDSLGVKVQGSDTP 568

Query: 1361 GLCHVSELSEDHVDN 1375
            G   +  LS DH +N
Sbjct: 569  GFLPMMHLS-DHQEN 582



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            +++DL P  +V+G + +V S G  + LS  +   V   +L+D  +++P K+F  G ++  
Sbjct: 363  RLQDLKPGQVVEGKITSVQSYGITVSLSNYVRGVVSKIHLADIILKNPAKKFNEGDMIKC 422

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYGLFITI 1354
            RVL+V    +++ +T K    RT   S++  +++      G    G +  V+ +G  +  
Sbjct: 423  RVLNVATAGRQLALTHK----RTLLTSKLPIMASYQAAKPGTWAHGFVLSVQDFGCIVMF 478

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             N N+ GL    E++++  ++   ++  G+ VK +++  +    ++++ +K
Sbjct: 479  YN-NVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCNPALEKLTVSLK 528



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 23/226 (10%)

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL-DGMSSTNSSDLSTDVDTPGKHLEKIED 1241
            Y +GQ VK  +L I  T +    V LS +S L DG +  +  +L          +  +  
Sbjct: 238  YRKGQRVKACILYIHPTTK---TVGLSFQSRLWDGRTLVDVQELPA--------IGTVYK 286

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
             +P + V   +      G  + LS +      +S LSD  VES E  F  G   + RV++
Sbjct: 287  KAPVVHVWSGI------GVTMKLSAETPGFAAVSQLSDQPVESIENTFKPGTQHSCRVIN 340

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
              PL  +  V+LK    ++  +     L +L  G +V G+I  V+SYG+ +++ N  + G
Sbjct: 341  CSPLDGQAIVSLK----KSVIEQPFLRLQDLKPGQVVEGKITSVQSYGITVSLSNY-VRG 395

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +     L++  + N    +  G+ +K ++L V    R+++L  K +
Sbjct: 396  VVSKIHLADIILKNPAKKFNEGDMIKCRVLNVATAGRQLALTHKRT 441



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 159/402 (39%), Gaps = 75/402 (18%)

Query: 616 QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           Q+LP+  +      VVH +       G  ++      GFA  S+  D     +  T+  G
Sbjct: 276 QELPAIGTVYKKAPVVHVWSG----IGVTMKLSAETPGFAAVSQLSDQPVESIENTFKPG 331

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
                 +++ +   G+  +SLK+S              ++E+    LQ  K         
Sbjct: 332 TQHSCRVINCSPLDGQAIVSLKKS--------------VIEQPFLRLQDLKP-------- 369

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQA 788
                G V+EGK+     +G+ VS   +  V G ++   LA   +++       G +I+ 
Sbjct: 370 -----GQVVEGKITSVQSYGITVSLSNY--VRGVVSKIHLADIILKNPAKKFNEGDMIKC 422

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 848
            +L+VA A R + L+ K   +       ++ QA K                 +  V  V+
Sbjct: 423 RVLNVATAGRQLALTHKRTLLTSKLPIMASYQAAKPG------------TWAHGFVLSVQ 470

Query: 849 ENYLVLSLPEYNHSIGYASVSDYN--TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL 906
           +   ++    YN+  G     +     Q+ P+K F  GQ V   VM+   +    +L + 
Sbjct: 471 DFGCIVMF--YNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMS--CNPALEKLTVS 526

Query: 907 LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDD 965
           LK     E S +  A   + ++VG +V  E+TE+KP  L +K  G    G + +  ++D 
Sbjct: 527 LKP----EKSGTPVA---ADFEVGKMVNVEVTEVKPDSLGVKVQGSDTPGFLPMMHLSDH 579

Query: 966 KSNVVENLFSNFKIGQTVTARIIAKSN--------KPDMKKS 999
           + N    L S + +G  +   +   S         KP +KK+
Sbjct: 580 QEN-CSLLLSRYSVGDVIQDAMYCCSRATGSMVTLKPSLKKA 620


>gi|330801352|ref|XP_003288692.1| hypothetical protein DICPUDRAFT_152947 [Dictyostelium purpureum]
 gi|325081255|gb|EGC34777.1| hypothetical protein DICPUDRAFT_152947 [Dictyostelium purpureum]
          Length = 915

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 221/740 (29%), Positives = 371/740 (50%), Gaps = 106/740 (14%)

Query: 1114 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1173
            I N+ +   +  GD + G IS+I  GV  + V+I  +L G V   +             D
Sbjct: 228  IENNQLNKKLSVGDKILGTISEI--GVLSMKVKIYNNLSGEVKLIDCN-----------D 274

Query: 1174 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG---------MSSTNSSD 1224
            E +  P S Y  G  +K  V  IS+       + LSL+ SL G          ++     
Sbjct: 275  EFRDSPFSIYSVGSVIKVFVKSISKD-----GISLSLKKSLLGPEHKFNPKYKNNPTQER 329

Query: 1225 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1284
              T+V + G H              GY+     +   + L+ KL+  +    +   ++  
Sbjct: 330  AITNVFSHGSH------------AWGYIIEKNQQIVRVELADKLNGVIQNEVVGPFHMHL 377

Query: 1285 PEKEFPIGKLVAGRVL---SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ 1341
             E    +G L+   VL    VE  ++ +  +++     T        L  L   DI+  +
Sbjct: 378  CE----VGSLIQVTVLGDPKVEGSNQVLNCSIRIDKKIT--------LQTLKTDDILPLE 425

Query: 1342 IKRVESYGLFITIENTNLVGLCHVSELSEDHV--DNIETIYRAGEKVKVKIL--KVDKEK 1397
            + RVE++GLF+   ++N+  L H+ E S++ +  + +   +  G+ V  K +  K  KEK
Sbjct: 426  VTRVETFGLFV--RHSNITALVHIKESSDEKLTPEQLAQNFSVGDLVLGKCIGQKFSKEK 483

Query: 1398 RR--ISLGMK---------SSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA 1446
             +   +  +K          SYFK   DN   + E++S      + ++   S+   S  +
Sbjct: 484  NKNFFNFSLKPEHFVDVDTESYFKVSWDNQDPTEEQQS------INTHISLSVQLKSIQS 537

Query: 1447 VQDMDMESEDG-GSLVLAQIES-----RASVPPLEVNLDDEQPD-----MDNGISQNQGH 1495
            ++   +E E   G L   Q++      +    PLE   DDE        +++   + +  
Sbjct: 538  IKPYLVEKEQKKGELSAKQLQQNLNNDQEEQQPLEEAEDDEFKSTSLLSLEDSKKRKKDE 597

Query: 1496 TDEA------KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSS 1548
            TDEA      + +D+K  +  K+K K ++E+EI+  E+ L + + AP +P +FERL+  S
Sbjct: 598  TDEADEFEENQVVDKKKQKTEKEKSKNKQEEEIKEREDLLADHNVAPESPQDFERLLLGS 657

Query: 1549 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1608
            PNSS++WIKYM++ LS++++ KAR   E+A++ I   E  E+ NIW+A +NLEN YG   
Sbjct: 658  PNSSYLWIKYMSYYLSLSEISKARETGEKAIKKILATEVLEQRNIWIALYNLENLYGTA- 716

Query: 1609 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1668
             E ++K+FQR++QY DPK ++L ++ + E T + +  +E    + KK K S K+W R  +
Sbjct: 717  -ETLLKLFQRSIQYQDPKTMYLTIIQILESTNKVERCEEYFKMLFKKTKSSAKIWCRYGE 775

Query: 1669 RLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1727
             LLK Q+ +    V+ RAL  LP+ K IK I++   LE+K G  +RGR++FEG++S YP 
Sbjct: 776  FLLKNQKLDQFNGVLSRALECLPKKKQIKVINKFGQLEYKLGDVERGRTIFEGLVSNYPN 835

Query: 1728 RTDLWSIYLDQEIRLGDV--------DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV 1779
            RTD+W+IYLD E+R  +         D IR LF R ++L +  + +K  FK++L +EK  
Sbjct: 836  RTDIWNIYLDMELRDKESIKSNKDLRDKIRELFNRTVNLKVSDRNIKQFFKRFLTFEKDF 895

Query: 1780 GEEERIEYVKQKAMEYVEST 1799
            G    I+ VK+ A+++VE+ 
Sbjct: 896  GNPRSIDDVKKLALKFVENN 915


>gi|147794791|emb|CAN60355.1| hypothetical protein VITISV_028402 [Vitis vinifera]
          Length = 446

 Score =  256 bits (653), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 146/251 (58%), Positives = 180/251 (71%), Gaps = 41/251 (16%)

Query: 744 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
           ++G++ ++ DFGVV++FE+++DV+GFI+++QL G T E GS +QA +LDVAK E LVDLS
Sbjct: 235 MKGRIQDAKDFGVVINFEKYNDVFGFISYYQLNGTTTERGSPVQAVVLDVAKTEHLVDLS 294

Query: 804 LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 863
           LK  F+DR RE +SN Q                                      YN++ 
Sbjct: 295 LKPEFLDRHREDSSNSQ--------------------------------------YNYAT 316

Query: 864 GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAK 922
           GYAS+SDYNTQKF +KQF   QSVIA VMALPS S  G LLL+LK++ E TETSSSKRAK
Sbjct: 317 GYASISDYNTQKFAKKQFPRRQSVIAIVMALPSPSIVGMLLLVLKSVIEATETSSSKRAK 376

Query: 923 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 982
           KKSSY+VG LVQAEITEIKPLELRLKFGIGFHGR+HI EV D+  NV+EN FSNF+IGQT
Sbjct: 377 KKSSYNVGPLVQAEITEIKPLELRLKFGIGFHGRVHIIEVCDE--NVIENPFSNFRIGQT 434

Query: 983 VTARIIAKSNK 993
           V+ARI+AK+NK
Sbjct: 435 VSARIVAKANK 445


>gi|167516894|ref|XP_001742788.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779412|gb|EDQ93026.1| predicted protein [Monosiga brevicollis MX1]
          Length = 265

 Score =  253 bits (647), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 124/264 (46%), Positives = 183/264 (69%), Gaps = 3/264 (1%)

Query: 1539 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1598
            ++ ER V +SPNSSF WI+Y+AF L + +++KAR++A RAL+TI    E+EK+N+WVA  
Sbjct: 4    EDHERAVMASPNSSFTWIQYIAFFLQLTELDKARAVAHRALKTIAPELEDEKMNVWVARL 63

Query: 1599 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658
            NLEN +G+  +EA+ KVF  + Q  D  K+H+ LLG+Y R+E++   +E+   M+KKFK 
Sbjct: 64   NLENSFGS--QEALDKVFADSCQRMDALKMHMHLLGIYMRSEKHDQVEEVFQAMLKKFKS 121

Query: 1659 SCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
               VWL+  + LL Q+Q    +A+++RAL S+P+H H+  IS+  ILEFK G  +RGR++
Sbjct: 122  HKSVWLKYAEYLLNQKQFATARALLERALKSVPKHDHVDLISKFGILEFKLGDVERGRTI 181

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1777
            FE +++ +PKR D+W+I++DQE+R+ D D IR LFER ++L L  KKMK  FK++LE+EK
Sbjct: 182  FENVVTTHPKRVDMWNIWIDQELRIDDEDAIRALFERVVTLRLSTKKMKHFFKRFLEFEK 241

Query: 1778 SVGEEERIEYVKQKAMEYVESTLA 1801
                 + IE VK  A  YVE   A
Sbjct: 242  EQDNADGIERVKNLARAYVEEKAA 265


>gi|154800462|ref|NP_001082837.2| protein RRP5 homolog [Danio rerio]
          Length = 1816

 Score =  252 bits (643), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/329 (44%), Positives = 212/329 (64%), Gaps = 5/329 (1%)

Query: 1473 PLEVNLDDEQPDMDNGISQNQGHTDE-AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1531
            P E  L    P      +QN    +E  K+   K +R   K+E++  EQ+    E  L++
Sbjct: 1483 PWESTLGSLTPFAPADDNQNSSEDEEEVKSKPAKKSRKELKQEQQNTEQKPSKLEAELMD 1542

Query: 1532 KDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK 1590
                P     FERL+ SSP+SS +W++YMAF L    +E+AR++AERAL+TI+ REE EK
Sbjct: 1543 TSVRPDNSTAFERLLLSSPDSSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEK 1602

Query: 1591 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLY 1650
            LNIWVA  NLEN YG P  +++ KVF+RA+QYC+P  V+  L  +Y ++E+ K A+ L  
Sbjct: 1603 LNIWVAMLNLENMYGTP--DSLQKVFERAIQYCEPLLVYQQLADIYAKSEKIKEAESLYK 1660

Query: 1651 KMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1709
             M+K+F+    V+L     LL+Q+Q +   A++QRAL SL   +H+  I++ A LEF+ G
Sbjct: 1661 SMVKRFRQDKAVYLSYGTFLLRQRQSDAANALLQRALQSLSSKEHVDLIARFARLEFQFG 1720

Query: 1710 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1769
             +++ +SMF+ +L+ YPKRTDLWS+++D  ++ G    +R LF+R I LS+  KK+KF F
Sbjct: 1721 NSEKAKSMFDKVLTTYPKRTDLWSVFIDLMVKHGSQKEVRELFDRVIHLSVSVKKIKFFF 1780

Query: 1770 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            K+YLEYEK  G  E I+ VKQKA+EYVES
Sbjct: 1781 KRYLEYEKKNGTPETIQVVKQKALEYVES 1809


>gi|383851354|ref|XP_003701198.1| PREDICTED: protein RRP5 homolog [Megachile rotundata]
          Length = 1397

 Score =  250 bits (638), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 130/324 (40%), Positives = 213/324 (65%), Gaps = 8/324 (2%)

Query: 1480 DEQPDMD----NGISQNQGHTDEAKTIDEKNNRHAKKKEKE-EREQEIRAAEERLLEKDA 1534
            D++P+++       S+++  T+E     +K    A+++EKE ++E+EIR  EE L     
Sbjct: 1069 DDKPNLELLTKESSSESEDDTEEQPKQKKKKLSAAERREKERQKEREIRQREEALASNQL 1128

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P + D+F+RLV +SP+SS +W++YMA+ L   ++EKAR++A RA++TI+ REENE+LN+W
Sbjct: 1129 PNSVDQFDRLVLASPDSSIIWLQYMAYHLQSTEIEKARAVARRAVKTISFREENERLNVW 1188

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
             A+ NLE+++G    E++  VFQ A++  D  KV+  +L ++    +    ++ +  MI 
Sbjct: 1189 NAWLNLESKFGT--SESLNDVFQEAVRTNDSLKVYTHMLTVHLEAGRQFELEKTINTMIG 1246

Query: 1655 KFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            KFK + +VW+     LLK   ++  + ++QRAL SLP   H+  +++ AILE K G  +R
Sbjct: 1247 KFKQNPQVWIECGSVLLKMGLKDKSRHIMQRALQSLPASDHVNLMARFAILENKYGDKER 1306

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
             +++FE ILS YPKR D+WS Y+D  ++ GDVD+ R + ERA+  +LPP+KMK LFKK++
Sbjct: 1307 AQTLFEQILSSYPKRVDIWSCYVDTLVKSGDVDIARKVLERAVIQTLPPRKMKSLFKKFI 1366

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVE 1797
             +E+  G +E +  V+Q A+EYVE
Sbjct: 1367 NFEEQHGTQENVARVQQMAVEYVE 1390



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 202/855 (23%), Positives = 374/855 (43%), Gaps = 84/855 (9%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEI-----EANEDNLLPTIFHVG 56
           G + EV + DL+I LPGGL G A+  D   +   +L N I     + N+   L  ++  G
Sbjct: 70  GCIFEVTQYDLMISLPGGLIGRAQVTDISESYTNMLQNLIKTEDTQPNDFKPLSELYSCG 129

Query: 57  QLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 116
             V C V  +   +K     +I LSL   L+ + L +  +  G  +   + SIEDHG+++
Sbjct: 130 DYVVCYVKSIQPQEK----WQIVLSLDPKLINQNLDISYLHNGSKILCNISSIEDHGFVV 185

Query: 117 HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD 176
             GL +   F+P     +N+       LL    VR I+    +  +          VT +
Sbjct: 186 DTGLTNIRAFIPT---PKNNEKYFCKQLLC--TVREIETNENMSTVKLSTKHKHIIVTNN 240

Query: 177 LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 236
            +  S+D L+PG      V  IL NG+ +SF +  +G ++  +L            Y+  
Sbjct: 241 TEIKSLDCLMPGTKFELYVNKILSNGLYVSFGSNHSGYINQLYLDEPLA------KYSVG 294

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIP 296
            ++   +L++ PT +    +L    + +++    VK+GDI D++  +  + G G+ L + 
Sbjct: 295 MEITGTLLYILPTVKFGYFSL----MVDKSRNDAVKLGDIIDEATTLFRESG-GITLQLN 349

Query: 297 STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 356
              V     +  ++V   +  K+ +K+  GS  + R+L +  ++ +    ++ S  E   
Sbjct: 350 KNGVRGFVPLKRTNV---DYDKIIEKFIPGSKHKCRVLTYSWMDAVYICTMQHSLLEQKY 406

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           F+  D+KPG VV  ++I++++    V    G +       H+S+  +    KK KV  E+
Sbjct: 407 FSLLDLKPGDVVNIRIISINAETGFVNVQLGKINGQVAPEHVSDAGL-SDLKKLKVDTEV 465

Query: 416 VFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 473
             +VLG+ + R     T K++L+ S L +LS   +A      HG I +I   G  V+F+ 
Sbjct: 466 EAKVLGISTARNKAYFTLKRSLLTSNLPVLSDIKDAECGSNYHGTIIQINNSGLLVKFFG 525

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDD 531
            ++G+ PR+    +   E +  Y VGQ V  +I S      +I L+    PT  +  E++
Sbjct: 526 DIKGWIPRNTSNKE-ASEVNWNYSVGQTVLVQIKSVDQNLGKIILTI---PTEDKKREEN 581

Query: 532 LVKLGSLVSGVVDVVTPNAVVVYVI---AKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
           +  +G  V G +   +   V + +     +  S G +P  H++  +E A ++ S   PG 
Sbjct: 582 VFTIGEHVEGTIIESSTQGVYLRISKNDGQDVSTGFLPAGHMSPCMETAALLASKCIPGD 641

Query: 589 EFDQLLVLDNESSNLLLSAKY---SLINSAQQL------PSDASHIHPNSVVHGYVCNII 639
               L+     S  L+L+A +       S +QL      P     I P+ V         
Sbjct: 642 TLSALVFATTPS--LILTATFLTDEKYRSFEQLRVGDCIPCSIKDIEPDGV--------- 690

Query: 640 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI--TLSLK 697
                 + +  ++G  P    V        K  ++ Q + + +  +N +   I  TLSLK
Sbjct: 691 ------KVILPVSGCTPFG-FVSYSNVSHFKLLHIHQILFAKVFSINRKEKEINVTLSLK 743

Query: 698 QSCCSSTDAS-----FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 752
           +      D        +    L   K+A L  +K+   + + +    +G  + GKV +  
Sbjct: 744 KVYNGLLDTYSKLIVAVDTLTLYFNKLAEL--AKNPFYDNRPISSVRLGQRVTGKVEKIT 801

Query: 753 DFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
           + G+VV+ E  +++ G ++    +G  ++ G  +   ++       LV+L+LK   +   
Sbjct: 802 NSGLVVALE--NNLQGIVSKDHYSG-NLKVGDTVVGTVMWKNYVHELVELTLKPTTMKSI 858

Query: 813 REANSNRQAQKKKRK 827
            E + N+Q +  + K
Sbjct: 859 SE-DQNKQIEIPQEK 872


>gi|213405933|ref|XP_002173738.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces japonicus
            yFS275]
 gi|212001785|gb|EEB07445.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces japonicus
            yFS275]
          Length = 1703

 Score =  250 bits (638), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 123/265 (46%), Positives = 174/265 (65%), Gaps = 3/265 (1%)

Query: 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1593
            AP+ P +FER + S PNSS +WI YMA+ L + +++K+R I +RAL+ IN REE EKLN+
Sbjct: 1435 APQGPADFERKLLSEPNSSLLWIGYMAYHLGLNEIDKSREIGQRALKAINFREEEEKLNV 1494

Query: 1594 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1653
            WVA  NLE  YGN  EE + K F+ A  + D   V+  L G+  + ++  LA E + +M+
Sbjct: 1495 WVALLNLEVAYGN--EETLDKTFKEACHFYDELVVYERLCGILIKQQRLDLAKEYMERMV 1552

Query: 1654 KKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            K+F     VWL     L+     E  + ++QR+L SLP+  H+  I + A+LEFK G  +
Sbjct: 1553 KRFSQIASVWLNYATFLMSNDDAEAARGLLQRSLQSLPKKDHVSTIEKFALLEFKQGDPE 1612

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
            RGR++FEG+LS YPKR DLW++ LD EI+ GDV ++R LF+R ++  L  KK KF+FKK+
Sbjct: 1613 RGRTIFEGLLSNYPKRLDLWNVLLDMEIKQGDVSIVRRLFQRLLANKLSLKKAKFVFKKW 1672

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVE 1797
            L +EK  G  E +E VKQ+A EYVE
Sbjct: 1673 LLFEKDHGTPEGVEDVKQRAAEYVE 1697



 Score =  240 bits (612), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 286/1145 (24%), Positives = 499/1145 (43%), Gaps = 89/1145 (7%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL---------LP 50
            ++G ++E+N  DL + LP  L G   +   +D+L   LD   E +EDN          L 
Sbjct: 130  VFGRISEINTLDLAVSLPNCLTGYVPITSISDSLSERLDKLDEVDEDNKSVAQESFPDLL 189

Query: 51   TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 110
              + VGQ V   V  + +D     K++I LSLR   +  GL  +   +G V+   V S E
Sbjct: 190  DFYTVGQWVRARVTSITNDSSSKKKKRIELSLRPQDVNGGLGADGFVKGSVIQTVVTSWE 249

Query: 111  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVYLSSDPDTV 169
            DHG  +  G+  FTGFLP    A N   +   G  +L  V    DR  ++    + P  +
Sbjct: 250  DHGIAMDLGIEDFTGFLPLG--AYNPETEFMEGQTVLCTVTSKKDRVFQLAMHQASPKAL 307

Query: 170  SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 229
             K         S+  ++PG + +  +  +LENGV    +     T D+ H  +       
Sbjct: 308  DKFP-------SVQAILPGNLANVLITDVLENGVTGKLMGVLNVTSDLMH-SSLSQNERL 359

Query: 230  KNDYNQHKKVNARILFVDPTSR-AVGLTLNPYLL-------HNRAPPSHVKVGDIYDQSK 281
             N++   K   ARIL+  P+S   V +T  P+ +           P   + +G   +++K
Sbjct: 360  ANEFTIAKTRPARILYTIPSSPPTVAVTFLPHAVDFNKTSAEQENPLEKLPLGFTVEEAK 419

Query: 282  VVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 340
            V  V   LG+  D+    V   A+++ +SD   ++V      Y+  S  + RI GF  ++
Sbjct: 420  VSAVSPSLGIFCDVGVEGVRGFAHISRLSDSRVDKVDPSSGDYQLHSTHKARITGFSFVD 479

Query: 341  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
             L    L+ S  +       D+  G V+KG V+ + + G IV+   G+  L P  HM++ 
Sbjct: 480  NLFVLSLQESIIDQPFLRVDDIPVGKVIKGSVVRLFAQGVIVKLSEGINGLVPTAHMADV 539

Query: 401  EIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 458
            ++  P +KFK G  +  RVL V S  KR+ +T KK+L+ S L I+ SY          G 
Sbjct: 540  QLHFPERKFKEGLPVKCRVLAVDSDRKRVLLTLKKSLLNSDLPIIDSYESVQPGAKAVGV 599

Query: 459  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 518
              +I   G  V FYN V+GF P +E+      +    + VGQ V   +++  P +R++ L
Sbjct: 600  FARILNTGAVVEFYNHVRGFLPTAEMSEAYIQDARDHFKVGQTVSVTVVNCDPETRKMRL 659

Query: 519  SFMMK---PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLAD-H 573
            S   +     R      +++GS+VSG V   T N+V+V +   G S  G I   HL+D  
Sbjct: 660  SCREQNWTNERSQRFTDLEVGSVVSGAVSQKTENSVIVDL---GNSVNGVIQVGHLSDGD 716

Query: 574  LEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNS 629
             +    + S I+   +  ++LVL  D E   + L+ K SLI++A+   LP   S +    
Sbjct: 717  AKKCQKILSKIRATTKLSEVLVLRKDLEKRIVFLTLKQSLIDAAKAGMLPKTLSDLKEGV 776

Query: 630  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
               G+V NI E G F+ F   +T  AP++   +      +  +   QS+      ++ E 
Sbjct: 777  KYAGFVKNITEFGVFIEFANGVTALAPKAYLSENYVPLPAALFKPFQSLTCVCFSIDMEK 836

Query: 690  GRITLSLK--QSCCSSTDASFMQEHFLLEE-KIAMLQSSKHNGSELKWVEGFIIGSV--I 744
             R  +SLK         D     ++ ++E    ++ ++  +   +L W    +I SV   
Sbjct: 837  ERALVSLKPLDKVNEKVDEITESKYVVIEPVDESITKAYDYTTGKLTW---GVISSVKAT 893

Query: 745  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDL 802
            +  +  + +    V   E  D +  I+      +T + G  IQ  +L    AK  + + +
Sbjct: 894  QLNIDLAKNVHGRVDVSEAFDNFEDISDPSKPFSTFKKGDKIQVRVLGTHDAKNHKFLPI 953

Query: 803  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE--YN 860
            S + V   +F E +      K+      +       T  A V       + +S+      
Sbjct: 954  SHR-VSPRQFLELSIKPSVMKQTEFSGEALTFKKGDTCIAFVNNTTPECIWVSVGSNLRG 1012

Query: 861  HSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL--LKAISETETSSS 918
                  + +D  T     ++F  G ++  TV+      ++G +L L  ++ + + ET S+
Sbjct: 1013 RIAALDASNDLETLNSITEKFPVGSAIQCTVL------SSGEILTLSAMEHVVDYETISA 1066

Query: 919  KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 978
                       G  +   I+ I  + + ++      GR+  T+V+DD      +LFS   
Sbjct: 1067 -----------GDKLLGRISNINDMGMIVQLPGALSGRVSRTDVSDDFETSPNSLFSR-- 1113

Query: 979  IGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS-EIGSKLLFEECDVSIGQRVTGYV 1037
              Q V   +++  + P+ K +    LS + S      EI    +    DV + +   G+V
Sbjct: 1114 -NQFVRVYVLS-VDVPNRKIA----LSTRASHFEEGKEIKDPEIKSFEDVEMNRVYRGFV 1167

Query: 1038 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1097
              V +    +T+ R++  ++ I  +    S ++E++  F + + V   V+ +++EKK + 
Sbjct: 1168 TNVADTGLFVTLGRNVVGRVKI--AELFDSFIKEWKPHFQVSQLVKAKVVHVDQEKKRIE 1225

Query: 1098 LVLRP 1102
            L L+P
Sbjct: 1226 LSLKP 1230



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 32/270 (11%)

Query: 449  ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 508
            A D+L+  G I+ I   G  V+    + G   R+++  D    P+S++   Q V+  ++S
Sbjct: 1066 AGDKLL--GRISNINDMGMIVQLPGALSGRVSRTDVSDDFETSPNSLFSRNQFVRVYVLS 1123

Query: 509  SIPASRRINLSFM---------MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 559
                +R+I LS           +K   +   + V++  +  G V  V    + V +    
Sbjct: 1124 VDVPNRKIALSTRASHFEEGKEIKDPEIKSFEDVEMNRVYRGFVTNVADTGLFVTL---- 1179

Query: 560  YSKGTIPTEHLADHLEHATVMKSVI---KPGYEFDQLLV-----LDNESSNLLLSAKYSL 611
                     ++   ++ A +  S I   KP ++  QL+      +D E   + LS K S 
Sbjct: 1180 -------GRNVVGRVKIAELFDSFIKEWKPHFQVSQLVKAKVVHVDQEKKRIELSLKPSR 1232

Query: 612  INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLS 669
            ++S +    + S I   S V G V    + G  +R  G   + G   +S+  D    D++
Sbjct: 1233 VSSKEASAKEFSEIEVGSNVDGTVIRCEDFGVLIRLDGTDNIVGLCHKSEIADTTVNDVT 1292

Query: 670  KTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            K Y  G  VR+++L V+ E  R+ L LK S
Sbjct: 1293 KLYSAGDKVRAHVLSVDPEKRRVALGLKSS 1322



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 114/274 (41%), Gaps = 41/274 (14%)

Query: 2    KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSC 61
            KL G ++ +N+  +++ LPG L G     D  D   D E   N      ++F   Q V  
Sbjct: 1069 KLLGRISNINDMGMIVQLPGALSGRVSRTDVSD---DFETSPN------SLFSRNQFVRV 1119

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYKG--------LSLETVQEGMVLTAYVKSIEDHG 113
             VL +D     +  RKI LS R S   +G         S E V+   V   +V ++ D G
Sbjct: 1120 YVLSVD-----VPNRKIALSTRASHFEEGKEIKDPEIKSFEDVEMNRVYRGFVTNVADTG 1174

Query: 114  YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS----IDRTRKVVYLSSDPDTV 169
              +  G  +  G +    L ++   + KP   +  +V++    +D+ +K + LS  P  V
Sbjct: 1175 LFVTLGR-NVVGRVKIAELFDSFIKEWKPHFQVSQLVKAKVVHVDQEKKRIELSLKPSRV 1233

Query: 170  S--KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 227
            S  +   K+   I +   V G ++        + GV++  L      V + H      TT
Sbjct: 1234 SSKEASAKEFSEIEVGSNVDGTVIRCE-----DFGVLIR-LDGTDNIVGLCHKSEIADTT 1287

Query: 228  NWKND----YNQHKKVNARILFVDPTSRAVGLTL 257
               ND    Y+   KV A +L VDP  R V L L
Sbjct: 1288 --VNDVTKLYSAGDKVRAHVLSVDPEKRRVALGL 1319



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 155/760 (20%), Positives = 294/760 (38%), Gaps = 123/760 (16%)

Query: 667  DLSKTYYVGQSVRSNILDVNSETG-----RITLSLKQSCCSSTDASFMQEHFLLEEKIAM 721
            DL   Y VGQ VR+ +  + +++      RI LSL+                        
Sbjct: 187  DLLDFYTVGQWVRARVTSITNDSSSKKKKRIELSLRPQDV-------------------- 226

Query: 722  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 781
                  NG      +GF+ GSVI+  V    D G+ +      D  GF+    L     E
Sbjct: 227  ------NGG--LGADGFVKGSVIQTVVTSWEDHGIAMDL-GIEDFTGFLP---LGAYNPE 274

Query: 782  SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN 841
            +  +    +L    +++           DR  +   ++ + K   K  + + +      N
Sbjct: 275  TEFMEGQTVLCTVTSKK-----------DRVFQLAMHQASPKALDKFPSVQAILPGNLAN 323

Query: 842  AIVEIVKENYLVLSLPEYNHSIGYASV-SDYNTQKFPQKQFLNGQSVIA------TVMAL 894
             ++  V EN +   L      +G  +V SD       Q + L  +  IA       +  +
Sbjct: 324  VLITDVLENGVTGKL------MGVLNVTSDLMHSSLSQNERLANEFTIAKTRPARILYTI 377

Query: 895  PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP-LELRLKFGI-G 952
            PSS     +  L  A+   +TS+ +    +      ++ +A+++ + P L +    G+ G
Sbjct: 378  PSSPPTVAVTFLPHAVDFNKTSAEQENPLEKLPLGFTVEEAKVSAVSPSLGIFCDVGVEG 437

Query: 953  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1012
              G  HI+ ++D + + V+    ++++  T  ARI   S   +     L+ LS++ S++ 
Sbjct: 438  VRGFAHISRLSDSRVDKVDPSSGDYQLHSTHKARITGFSFVDN-----LFVLSLQESII- 491

Query: 1013 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1072
                  +      D+ +G+ + G V ++  +  ++ +S  +     +  +     +L   
Sbjct: 492  -----DQPFLRVDDIPVGKVIKGSVVRLFAQGVIVKLSEGING--LVPTAHMADVQLHFP 544

Query: 1073 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1132
            +R+F  G  V   VL+++ ++K + L L+      S    D+   +    +  G    G 
Sbjct: 545  ERKFKEGLPVKCRVLAVDSDRKRVLLTLKK-----SLLNSDLPIIDSYESVQPGAKAVGV 599

Query: 1133 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1192
             ++IL+   G VV+   H+ G +   E+    + D    +  GQ                
Sbjct: 600  FARILN--TGAVVEFYNHVRGFLPTAEMSEAYIQDARDHFKVGQ---------------- 641

Query: 1193 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1252
               +S TV         +R S    + TN            +  ++  DL    +V G V
Sbjct: 642  --TVSVTVVNCDPETRKMRLSCREQNWTN------------ERSQRFTDLEVGSVVSGAV 687

Query: 1253 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS-----VEPLSK 1307
               T     + L   ++  + + +LSDG  +  +K   + K+ A   LS      + L K
Sbjct: 688  SQKTENSVIVDLGNSVNGVIQVGHLSDGDAKKCQK--ILSKIRATTKLSEVLVLRKDLEK 745

Query: 1308 R-VEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
            R V +TLK S    A    +   LS+L  G    G +K +  +G+FI   N  +  L   
Sbjct: 746  RIVFLTLKQSLIDAAKAGMLPKTLSDLKEGVKYAGFVKNITEFGVFIEFAN-GVTALAPK 804

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + LSE++V     +++  + +      +D EK R  + +K
Sbjct: 805  AYLSENYVPLPAALFKPFQSLTCVCFSIDMEKERALVSLK 844



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 23/243 (9%)

Query: 314  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
            E +  + +K+  GS ++  +L        +  IL  SA E +V  +  +  G  + G++ 
Sbjct: 1024 ETLNSITEKFPVGSAIQCTVLS-------SGEILTLSAMEHVV-DYETISAGDKLLGRIS 1075

Query: 374  AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTH 431
             ++  G IVQ PG +        +S+     P   F     +   VL V   +++I ++ 
Sbjct: 1076 NINDMGMIVQLPGALSGRVSRTDVSDDFETSPNSLFSRNQFVRVYVLSVDVPNRKIALST 1135

Query: 432  KKTLVKSKLAI----LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 487
            + +  +    I    + S+ +     +  G++T +   G FV     V G    +EL   
Sbjct: 1136 RASHFEEGKEIKDPEIKSFEDVEMNRVYRGFVTNVADTGLFVTLGRNVVGRVKIAELFDS 1195

Query: 488  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-------VKLGSLVS 540
               E    + V Q+VK +++      +RI LS  +KP+RVS  +        +++GS V 
Sbjct: 1196 FIKEWKPHFQVSQLVKAKVVHVDQEKKRIELS--LKPSRVSSKEASAKEFSEIEVGSNVD 1253

Query: 541  GVV 543
            G V
Sbjct: 1254 GTV 1256



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 145/355 (40%), Gaps = 49/355 (13%)

Query: 17   ICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKR 76
            + +   LRG   A DA      N++E    N +   F VG  + C VL       EI   
Sbjct: 1004 VSVGSNLRGRIAALDA-----SNDLETL--NSITEKFPVGSAIQCTVLS----SGEI--- 1049

Query: 77   KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAEN 135
                 L LS +   +  ET+  G  L   + +I D G I+   LP + +G + R +++++
Sbjct: 1050 -----LTLSAMEHVVDYETISAGDKLLGRISNINDMGMIVQ--LPGALSGRVSRTDVSDD 1102

Query: 136  SGIDVKPGLL------LQGVVRSIDRTRKVVYLSS------DPDTVSKCVTKDLKGISID 183
               +  P  L      ++  V S+D   + + LS+      +   +     K  + + ++
Sbjct: 1103 --FETSPNSLFSRNQFVRVYVLSVDVPNRKIALSTRASHFEEGKEIKDPEIKSFEDVEMN 1160

Query: 184  LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 243
             +  G      V ++ + G+ ++      G V I  L ++F    WK  +   + V A++
Sbjct: 1161 RVYRGF-----VTNVADTGLFVTLGRNVVGRVKIAELFDSF-IKEWKPHFQVSQLVKAKV 1214

Query: 244  LFVDPTSRAVGLTLNPYLLHNRAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 299
            + VD   + + L+L P  + ++       S ++VG   D + +   D G+ + LD     
Sbjct: 1215 VHVDQEKKRIELSLKPSRVSSKEASAKEFSEIEVGSNVDGTVIRCEDFGVLIRLDGTDNI 1274

Query: 300  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 354
            V       I+D    +V KL   Y  G  VR  +L     +      LK+S F+ 
Sbjct: 1275 VGLCHKSEIADTTVNDVTKL---YSAGDKVRAHVLSVDPEKRRVALGLKSSYFDA 1326


>gi|388580414|gb|EIM20729.1| hypothetical protein WALSEDRAFT_69646 [Wallemia sebi CBS 633.66]
          Length = 1098

 Score =  250 bits (638), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 181/601 (30%), Positives = 310/601 (51%), Gaps = 45/601 (7%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K   K+ D     IV G VK +     FI +S  +DA V  ++ SD  ++ PEK++    
Sbjct: 501  KSFMKVSDAEVGAIVDGIVKKIADDRMFISISGNVDAIVWPTHYSDVKLKHPEKKYRSDM 560

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD---IVIGQIKRVESYGL 1350
             V  R+L+ E    RV  TLK    ++  +S++  +++    +   I    +  ++  G 
Sbjct: 561  KVKARILTAEADKNRVTATLK----KSLVKSDLPIITSYDASNKNVITYATVSGIKEKGA 616

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
             +   N N+     V E+SE +  + +     G+ VKV I+KV+ E +R+   ++ +  K
Sbjct: 617  IVDFYN-NVRAFLPVGEISESYTKHAKDALEVGQIVKVIIVKVEAEAKRMMASIRKTVPK 675

Query: 1411 NDADNL-QMSSEEESDEA-----IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL-- 1462
             + + L +    E+ D++      E+    N  ++  +  +A +D D ESEDG    L  
Sbjct: 676  EEREALIKERKAEQKDKSPAVVDEEDEEDVNAETMQIDGEIASKD-DSESEDGSVQGLEI 734

Query: 1463 ----AQIESRASVPPLEVNLDDEQPDMDN---------GISQNQGHTDEAKTID------ 1503
                ++ E       + ++  +++P M           G + +    D+ K  +      
Sbjct: 735  DEESSEEEEDEDEDEVTIDTTNKKPKMSTKEAKALDIGGFNWDGDDNDDEKKSNGSDEED 794

Query: 1504 ------EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIK 1557
                    NN   K+K+K +  +        L+ +  P + ++FERL+  SPNSS+VWI+
Sbjct: 795  EDSDAESTNNDDGKRKKKRKGTKHFEGDLTALMNEKPPESSNDFERLLLGSPNSSYVWIQ 854

Query: 1558 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1617
            YM+F L +++++KAR IA+RAL+TI  RE  EK NIW+A  NLEN +G+  +++  +VF+
Sbjct: 855  YMSFQLKLSEIDKAREIAKRALKTIGFRESQEKFNIWIALLNLENTFGD--DDSFEEVFK 912

Query: 1618 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQE 1676
             A  Y DP  +HL +  + E +E+   A ++  K  KKF      W+   +   +   Q 
Sbjct: 913  DATSYNDPLTMHLKVADILEASEKFDKASDVYVKSSKKFGAEVIFWVNYAEYNFRIGNQT 972

Query: 1677 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1736
              ++++ R+L SL +  HI  IS+ A +EF+ G A+RG+++FEGI+  +PK+ D W IY+
Sbjct: 973  AARSLLTRSLQSLEKRDHISCISKFAQMEFRLGDAERGKTIFEGIVESHPKQLDQWFIYV 1032

Query: 1737 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            D   R  D+  +R +FER +S  L  KK K +FKK+L  EK +G+E  I+ VKQ+A+ + 
Sbjct: 1033 DMLSRKEDLGGLRNVFERLLSHKLSTKKAKSVFKKWLTIEKELGDESGIDDVKQRAVAWN 1092

Query: 1797 E 1797
            E
Sbjct: 1093 E 1093



 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 141/529 (26%), Positives = 251/529 (47%), Gaps = 47/529 (8%)

Query: 42  EANED-NLLPTIFHVGQLVSCIVLQLDDD------KKE-----IGKRKIWLSLRLSLLYK 89
           + NED   L  +F VGQ +   VL +  D      KKE        RK+ LS+    +  
Sbjct: 166 DGNEDLPELDELFQVGQWLRATVLHVHKDSNTGRVKKEGEEIIKASRKLELSIDPRSVND 225

Query: 90  GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 149
           GL+ + +++   +   V+S+EDHGY++  G+P   GF+    + + SG D +    L G 
Sbjct: 226 GLTQKDLEKDFTIVGAVRSVEDHGYLVDLGVPDVDGFVSTTEM-DASGFDKE----LAGQ 280

Query: 150 VRSI------DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 203
           V SI       ++ KVV LS +P T +K    +    +++ ++PG++++  V ++L  G+
Sbjct: 281 VGSILPLTVTSKSNKVVNLSPNPSTFAKSYMNEAN--TLESVIPGVVLNAMVTAVLPAGL 338

Query: 204 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYL 261
            + F  +F GT+   H+   +   +    +   KKV AR++F  PTS  +   L+L P++
Sbjct: 339 NVKFFGFFDGTISKEHI--PYEKKSLSERFPVGKKVKARVIFDHPTSNPKRFSLSLLPHI 396

Query: 262 LHNRAPPSH-----------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD 310
           ++ +   +               G I +  +V+ V+   GL + IP + +    +V IS 
Sbjct: 397 VNLQNSLTEKSEDGLTIAEAFGKGRIIEGVQVITVESEKGLYVTIPDSEL--LGFVHISQ 454

Query: 311 VAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV 367
           +A++    L       K GS    R++G  +++ +    +K S  E      SD + G +
Sbjct: 455 IADDHTPSLSSSSGATKVGSLHTARVVGLSYVDKIVQLSIKPSVLEKSFMKVSDAEVGAI 514

Query: 368 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--K 425
           V G V  +      +   G V A+    H S+ ++  P KK++   ++  R+L  ++   
Sbjct: 515 VDGIVKKIADDRMFISISGNVDAIVWPTHYSDVKLKHPEKKYRSDMKVKARILTAEADKN 574

Query: 426 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 485
           R+T T KK+LVKS L I++SY  +   +IT+  ++ I++ G  V FYN V+ F P  E+ 
Sbjct: 575 RVTATLKKSLVKSDLPIITSYDASNKNVITYATVSGIKEKGAIVDFYNNVRAFLPVGEIS 634

Query: 486 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
                       VGQ+VK  I+     ++R+  S      +   + L+K
Sbjct: 635 ESYTKHAKDALEVGQIVKVIIVKVEAEAKRMMASIRKTVPKEEREALIK 683



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 153/385 (39%), Gaps = 55/385 (14%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL- 420
           V PG+V+   V AV   G  V+F G         H+  +E     ++F VG ++  RV+ 
Sbjct: 320 VIPGVVLNAMVTAVLPAGLNVKFFGFFDGTISKEHIP-YEKKSLSERFPVGKKVKARVIF 378

Query: 421 ---GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
                  KR +++    L+   + + +S  E ++  +T   I +    G   R   GVQ 
Sbjct: 379 DHPTSNPKRFSLS----LLPHIVNLQNSLTEKSEDGLT---IAEAFGKG---RIIEGVQV 428

Query: 478 FAPRSELGLD---PGCEPSSMYHVGQVVKCRIMS-----------SIPASRRINLSFMMK 523
               SE GL    P  E     H+ Q+      S           S+  +R + LS++ K
Sbjct: 429 ITVESEKGLYVTIPDSELLGFVHISQIADDHTPSLSSSSGATKVGSLHTARVVGLSYVDK 488

Query: 524 PTRVS------EDDLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 572
             ++S      E   +K+     G++V G+V  +  + + + +   G     +   H +D
Sbjct: 489 IVQLSIKPSVLEKSFMKVSDAEVGAIVDGIVKKIADDRMFISI--SGNVDAIVWPTHYSD 546

Query: 573 -HLEHATVMKSVIKPGYEFD-----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 626
             L+H        +  Y  D     ++L  + + + +  + K SL+ S   + +     +
Sbjct: 547 VKLKHP-------EKKYRSDMKVKARILTAEADKNRVTATLKKSLVKSDLPIITSYDASN 599

Query: 627 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 686
            N + +  V  I E G  V F   +  F P  +  +           VGQ V+  I+ V 
Sbjct: 600 KNVITYATVSGIKEKGAIVDFYNNVRAFLPVGEISESYTKHAKDALEVGQIVKVIIVKVE 659

Query: 687 SETGRITLSLKQSCCSSTDASFMQE 711
           +E  R+  S++++       + ++E
Sbjct: 660 AEAKRMMASIRKTVPKEEREALIKE 684



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 167/434 (38%), Gaps = 45/434 (10%)

Query: 307 TISDVAEEEVRKLEKKYKEGSCVRVRIL--------GFRHLEG---------LATGILKA 349
           ++SD   E++ +L++ ++ G  +R  +L        G    EG         L   I   
Sbjct: 162 SVSDDGNEDLPELDELFQVGQWLRATVLHVHKDSNTGRVKKEGEEIIKASRKLELSIDPR 221

Query: 350 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 409
           S  +GL  T  D++    + G V +V+  G +V    GV  +      +E +     K+ 
Sbjct: 222 SVNDGL--TQKDLEKDFTIVGAVRSVEDHGYLVDL--GVPDVDGFVSTTEMDASGFDKEL 277

Query: 410 --KVGAELVFRVLGVKSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 466
             +VG+ L   V    +K + ++ +  T  KS +   ++       ++ +  +T +   G
Sbjct: 278 AGQVGSILPLTVTSKSNKVVNLSPNPSTFAKSYMNEANTLESVIPGVVLNAMVTAVLPAG 337

Query: 467 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-- 524
             V+F+    G   +  +  +     S  + VG+ VK R++   P S     S  + P  
Sbjct: 338 LNVKFFGFFDGTISKEHIPYEKKS-LSERFPVGKKVKARVIFDHPTSNPKRFSLSLLPHI 396

Query: 525 -------TRVSEDDLV-----KLGSLVSGVVDVVTPNAVVVYV-IAKGYSKGTIPTEHLA 571
                  T  SED L        G ++ GV  +   +   +YV I      G +    +A
Sbjct: 397 VNLQNSLTEKSEDGLTIAEAFGKGRIIEGVQVITVESEKGLYVTIPDSELLGFVHISQIA 456

Query: 572 D-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 629
           D H    +      K G      +V L      + LS K S++  +    SDA      +
Sbjct: 457 DDHTPSLSSSSGATKVGSLHTARVVGLSYVDKIVQLSIKPSVLEKSFMKVSDA---EVGA 513

Query: 630 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
           +V G V  I +   F+   G +      +   D +     K Y     V++ IL   ++ 
Sbjct: 514 IVDGIVKKIADDRMFISISGNVDAIVWPTHYSDVKLKHPEKKYRSDMKVKARILTAEADK 573

Query: 690 GRITLSLKQSCCSS 703
            R+T +LK+S   S
Sbjct: 574 NRVTATLKKSLVKS 587



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 24/107 (22%)

Query: 1289 FPIGKLVAGRVLSVEPLS--KRVEVTL-------------KTSDSRTASQSEINNLSNLH 1333
            FP+GK V  RV+   P S  KR  ++L             K+ D  T +++         
Sbjct: 366  FPVGKKVKARVIFDHPTSNPKRFSLSLLPHIVNLQNSLTEKSEDGLTIAEA-------FG 418

Query: 1334 VGDIVIG-QIKRVES-YGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
             G I+ G Q+  VES  GL++TI ++ L+G  H+S++++DH  ++ +
Sbjct: 419  KGRIIEGVQVITVESEKGLYVTIPDSELLGFVHISQIADDHTPSLSS 465



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 13/147 (8%)

Query: 955  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1014
            G +HI+++ DD +  + +     K+G   TAR++  S         + +LSIKPS+L   
Sbjct: 448  GFVHISQIADDHTPSLSSSSGATKVGSLHTARVVGLSYVDK-----IVQLSIKPSVL--- 499

Query: 1015 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1074
                K   +  D  +G  V G V K+ ++   ++IS ++ A   +  + Y   +L+  ++
Sbjct: 500  ---EKSFMKVSDAEVGAIVDGIVKKIADDRMFISISGNVDA--IVWPTHYSDVKLKHPEK 554

Query: 1075 RFHIGKAVTGHVLSINKEKKLLRLVLR 1101
            ++     V   +L+   +K  +   L+
Sbjct: 555  KYRSDMKVKARILTAEADKNRVTATLK 581


>gi|340727098|ref|XP_003401888.1| PREDICTED: protein RRP5 homolog [Bombus terrestris]
          Length = 1510

 Score =  248 bits (633), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/290 (42%), Positives = 198/290 (68%), Gaps = 4/290 (1%)

Query: 1510 AKKKEKE-EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1568
            A+++E+E ++E EIR  EE L     P + D+F+RLV +SP+SS VW++YMA+ L   ++
Sbjct: 1218 AERREQERQKEHEIRQREEALANNLLPNSVDQFDRLVLASPDSSIVWLQYMAYHLQTTEI 1277

Query: 1569 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1628
            EKAR++A RA++TI+ REENEKLN+W A+ NLE++YG P  E++  VFQ A++  D  K+
Sbjct: 1278 EKARAVARRAVKTISFREENEKLNVWNAWLNLESKYGIP--ESLNDVFQEAVRSNDSLKI 1335

Query: 1629 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALL 1687
            +  +L ++    +    ++ +  MI KFKH  ++W    + L+K   ++  + ++QRAL 
Sbjct: 1336 YNHMLTVHVEAGRQIELEKTINTMIGKFKHIPEIWFNCGEALIKMGLRDKSRHIMQRALQ 1395

Query: 1688 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1747
            SLP  +H+  +++ AI+E K G  +R +++FE ILS YPKR D+WS Y+D  ++  D+D+
Sbjct: 1396 SLPASEHVNLMARFAIMENKFGDKERAQTLFEQILSSYPKRVDIWSCYIDSLVKSNDIDI 1455

Query: 1748 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
             R + ERA++ +LPP+KMK LFKK++ +E+  G +E +  V+Q A+EYVE
Sbjct: 1456 ARKVLERAVAQTLPPRKMKILFKKFINFEEQHGTQEDVIRVQQMAVEYVE 1505



 Score =  157 bits (396), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 151/597 (25%), Positives = 273/597 (45%), Gaps = 39/597 (6%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDP--------ILDNEIEANEDNLLPTIFHVG 56
           G + EV   DL+I LPGGL G A+  D  +         +   + + NE   LP ++  G
Sbjct: 191 GCIYEVTNYDLLISLPGGLIGRAQITDISECYTNLLQSLVKSQDSQTNEFKSLPELYTCG 250

Query: 57  QLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 116
             V C V  +   ++     +I +SL  +L+ + L +  +  G  +   + SIEDHGY++
Sbjct: 251 DYVVCYVKAIQSQER----LQILISLEPNLINQSLDVNYLDSGSKIVCTISSIEDHGYVV 306

Query: 117 HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD 176
             GL +   F+P    + N     K  L     V++ + T  +  L+     V      +
Sbjct: 307 DTGLINVRAFIPTKE-SGNEKCLCKQLLCYVKEVKTNENTSTIT-LTLKQKLVKAICETE 364

Query: 177 LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 236
           +K  S+D L+PG   +  ++ +L NG+ +S      G ++  +L    P + + N+    
Sbjct: 365 IK--SLDSLMPGTKFNLSIKKVLSNGLCVSLDENNVGFINQTYLDE--PLSKYSNNL--- 417

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIP 296
            K+   +L++ PT +    +    +  NR   + +K GD+  ++ V+  + G G++L + 
Sbjct: 418 -KITGTLLYILPTIKFAYFS--STIDKNR--DNTIKPGDVVKEATVLFRESG-GIVLQLA 471

Query: 297 STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 356
            + +    +V+    + E    +EK +  G+  + RIL +  L+G+    ++ S  E   
Sbjct: 472 KSGIR--GFVSFKRTSVEYDTIIEK-FAPGTTHKCRILSYSWLDGIYICTMQRSLLEQKY 528

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           F+ SD KPG VV  K+  +D     V    G         H+S+ E +   KK KV  E+
Sbjct: 529 FSLSDFKPGDVVNVKITNIDKVNGFVNVQYGKFNGQIAPDHISD-EGLSALKKLKVDKEV 587

Query: 416 VFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 473
             RVL V    K++ +T K++L+ S L IL++  +A      H  I +I KHG  V+F+ 
Sbjct: 588 EARVLFVHIGRKKVYLTLKRSLITSDLPILANIQDAKTDSKHHATIIQIHKHGILVKFFG 647

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 533
            V+G+ P + L  +     +  Y +GQ +  +I +    S  I LS   +  +  E    
Sbjct: 648 DVKGWIPHTALDTET-FNINWNYSIGQTILVKIQTVNTDSGEITLSVANQDIQ-DEKATF 705

Query: 534 KLGSLVSGVVDVVTPNAVVVYVI---AKGYSKGTIPTEHLADHLEHATVMKSVIKPG 587
            +G  V+G +   +   + + +     +  S G +P  H++  +E A ++ S   PG
Sbjct: 706 HIGEEVAGTIIESSTQGLYLKISKNEGQTVSTGFLPAGHMSPCMEIAALLASKYVPG 762



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 22/235 (9%)

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
           ++ FAP    G    C   S   +  +  C +  S+   +  +LS   KP  V    +  
Sbjct: 492 IEKFAP----GTTHKCRILSYSWLDGIYICTMQRSLLEQKYFSLS-DFKPGDVVNVKITN 546

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QL 593
           +   V+G V+V             G   G I  +H++D  E  + +K  +K   E + ++
Sbjct: 547 IDK-VNGFVNV-----------QYGKFNGQIAPDHISD--EGLSALKK-LKVDKEVEARV 591

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
           L +      + L+ K SLI S   + ++      +S  H  +  I + G  V+F G + G
Sbjct: 592 LFVHIGRKKVYLTLKRSLITSDLPILANIQDAKTDSKHHATIIQIHKHGILVKFFGDVKG 651

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 708
           + P + A+D +  +++  Y +GQ++   I  VN+++G ITLS+         A+F
Sbjct: 652 WIPHT-ALDTETFNINWNYSIGQTILVKIQTVNTDSGEITLSVANQDIQDEKATF 705


>gi|63102515|gb|AAH95720.1| Pdcd11 protein [Danio rerio]
          Length = 409

 Score =  244 bits (624), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 146/329 (44%), Positives = 212/329 (64%), Gaps = 5/329 (1%)

Query: 1473 PLEVNLDDEQPDMDNGISQNQGH-TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1531
            P E  L    P      +QN     +E K+   K +R   K+E++  EQ+    E  L++
Sbjct: 76   PWESTLGSLTPFAPADDNQNSSEDEEEVKSKPAKKSRKELKQEQQNTEQKPSKLEAELMD 135

Query: 1532 KDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK 1590
                P     FERL+ SSP+SS +W++YMAF L    +E+AR++AERAL+TI+ REE EK
Sbjct: 136  TSVRPDNSTAFERLLLSSPDSSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEK 195

Query: 1591 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLY 1650
            LNIWVA  NLEN YG P  +++ KVF+RA+QYC+P  V+  L  +Y ++E+ K A+ L  
Sbjct: 196  LNIWVAMLNLENMYGTP--DSLQKVFERAIQYCEPLLVYQQLADIYAKSEKIKEAESLYK 253

Query: 1651 KMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1709
             M+K+F+    V+L     LL+Q+Q +   A++QRAL SL   +H+  I++ A LEF+ G
Sbjct: 254  SMVKRFRQDKAVYLSYGTFLLRQRQSDAANALLQRALQSLSSKEHVDLIARFARLEFQFG 313

Query: 1710 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1769
             +++ +SMF+ +L+ YPKRTDLWS+++D  ++ G    +R LF+R I LS+  KK+KF F
Sbjct: 314  NSEKAKSMFDKVLTTYPKRTDLWSVFIDLMVKHGSQKEVRELFDRVIHLSVSVKKIKFFF 373

Query: 1770 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            K+YLEYEK  G  E I+ VKQKA+EYVES
Sbjct: 374  KRYLEYEKKNGTPETIQVVKQKALEYVES 402


>gi|350424715|ref|XP_003493888.1| PREDICTED: protein RRP5 homolog [Bombus impatiens]
          Length = 1529

 Score =  244 bits (622), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 203/310 (65%), Gaps = 4/310 (1%)

Query: 1490 SQNQGHTDEAKTIDEKNNRHAKKKEKE-EREQEIRAAEERLLEKDAPRTPDEFERLVRSS 1548
            S ++   +E   +  K    A+++E+E ++E+EIR  EE L +   P + D+F+RLV +S
Sbjct: 1217 SDSEDEIEEKPKLKNKKLSAAERREQERQKEREIRQREEALADNLLPNSVDQFDRLVLAS 1276

Query: 1549 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1608
            P+SS +W++YMA+ L   ++EKAR++A RA++TIN REENEKLN+W A+ NLE++YG P 
Sbjct: 1277 PDSSIIWLQYMAYHLQTTEIEKARAVARRAVKTINFREENEKLNVWNAWLNLESKYGIP- 1335

Query: 1609 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1668
             E++  VFQ A++  D  K++  +L ++    +    ++ +  MI KFKH  +VW    +
Sbjct: 1336 -ESLNDVFQEAVRSNDSLKIYNHMLTVHVEAGRQIELEKTINTMIGKFKHIPEVWFNCGE 1394

Query: 1669 RLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1727
             L+K   ++  + ++QRAL SLP  +H+  + + AI+E K G  +R +++FE ILS YPK
Sbjct: 1395 ALVKMGLKDKSRHIMQRALQSLPASEHVNLMVRFAIMENKFGDKERAQTLFEQILSSYPK 1454

Query: 1728 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1787
            R D+WS Y+D  ++  D+D+ R + ERA+   LPP+KMK L+KK++  E+  G +E +  
Sbjct: 1455 RVDIWSCYVDSLVKSNDIDIARKVLERAVLQVLPPRKMKILYKKFINLEEQHGTQEDVIR 1514

Query: 1788 VKQKAMEYVE 1797
            V+Q A+EYVE
Sbjct: 1515 VQQMAVEYVE 1524



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 153/600 (25%), Positives = 274/600 (45%), Gaps = 45/600 (7%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEIEA-----NEDNLLPTIFHVG 56
           G + EV   DL+I LPGGL G A+  D       +L + +++     NE   L  ++  G
Sbjct: 210 GCIYEVTNYDLLISLPGGLVGRAQITDISECYTNLLQSLVKSQDSLTNELKSLSELYTYG 269

Query: 57  QLVSCIVLQLDDDKKEIGKRKIW---LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
             V C V       K I  ++ W   +SL  SL+ + L +  +  G  +   + SIEDHG
Sbjct: 270 DYVVCYV-------KAIQPQETWQISISLEPSLINQSLDVTYLDSGSKIVCTISSIEDHG 322

Query: 114 YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 173
           Y++  GL +   F+     + N     K  L     V++ + T  ++    +    + C 
Sbjct: 323 YVVDTGLINVRAFISTKE-SGNKKCLCKQLLCYVKEVKTNENTSTIILTLKEKLVKAICE 381

Query: 174 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 233
           T ++K  S+D L+PG   +  ++ +L NG+ +S      G ++  +L    P + + N+ 
Sbjct: 382 T-EIK--SLDSLMPGTKFNLSIKKVLSNGLCVSLDENNIGFINQTYLDE--PLSKYSNNL 436

Query: 234 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL 293
               K+   +L++ PT +    +    +  NR     +K GD+  ++ V+  + G G++L
Sbjct: 437 ----KITGTLLYILPTIKFAYFS--STIDKNR--DYTIKPGDVVKEATVLFRESG-GIVL 487

Query: 294 DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 353
            +  + +    +V+    + E    +EK +  G+  + RIL +  L+G+    ++ S  E
Sbjct: 488 QLAKSGIR--GFVSFKRTSVEYDTIIEK-FAPGTTHKCRILSYSWLDGIYICTMQRSLLE 544

Query: 354 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVG 412
              F+ SD KPG VV  K+  +D     +    G         H+S+ E +   KK KV 
Sbjct: 545 QKYFSLSDFKPGDVVNVKITNIDKVNGFINVQHGKFNGQIAPDHISD-EGLSALKKLKVD 603

Query: 413 AELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 470
            E+  RVL V    KRI +T K++L+ S L IL++  +A      H  I +I K G  V+
Sbjct: 604 EEVEARVLSVHIDRKRIYLTLKRSLITSDLPILANIQDAKIDAKHHATIIQIHKRGILVK 663

Query: 471 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
           F+  V+G+ P + L +      +  Y +GQ +  +I +    S  I L+   +  +V E+
Sbjct: 664 FFGDVKGWIPHTALDMLTS-NVNWNYSIGQTISVKIQTVNTDSGEITLNVANQDIQV-EE 721

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVI---AKGYSKGTIPTEHLADHLEHATVMKSVIKPG 587
               +G  V G +   +   + + +     +  S G +P  H++  +E A ++ S   PG
Sbjct: 722 ATFDIGEEVEGTIIESSTQGLYLRICRNEGQTVSTGFLPAGHMSPCMEIAALLASKYVPG 781



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 22/241 (9%)

Query: 469 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 528
           V +   ++ FAP    G    C   S   +  +  C +  S+   +  +LS   KP  V 
Sbjct: 505 VEYDTIIEKFAP----GTTHKCRILSYSWLDGIYICTMQRSLLEQKYFSLS-DFKPGDVV 559

Query: 529 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
              +  +   V+G ++V             G   G I  +H++D  E  + +K  +K   
Sbjct: 560 NVKITNIDK-VNGFINV-----------QHGKFNGQIAPDHISD--EGLSALKK-LKVDE 604

Query: 589 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
           E + ++L +  +   + L+ K SLI S   + ++      ++  H  +  I + G  V+F
Sbjct: 605 EVEARVLSVHIDRKRIYLTLKRSLITSDLPILANIQDAKIDAKHHATIIQIHKRGILVKF 664

Query: 648 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
            G + G+ P + A+D   ++++  Y +GQ++   I  VN+++G ITL++        +A+
Sbjct: 665 FGDVKGWIPHT-ALDMLTSNVNWNYSIGQTISVKIQTVNTDSGEITLNVANQDIQVEEAT 723

Query: 708 F 708
           F
Sbjct: 724 F 724


>gi|66804133|ref|XP_635864.1| HAT repeat-containing protein [Dictyostelium discoideum AX4]
 gi|60464203|gb|EAL62362.1| HAT repeat-containing protein [Dictyostelium discoideum AX4]
          Length = 909

 Score =  243 bits (620), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 251/944 (26%), Positives = 450/944 (47%), Gaps = 148/944 (15%)

Query: 917  SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN-DDKSNVVENLFS 975
            + K   +   + +G+ ++  + EI+  E+   F   + G++H+  +   DK    E++ +
Sbjct: 50   NKKEINENDKFKIGNKIEVCVKEIRDFEVITTFE-DYIGKLHVCNIPLPDKEG--ESVLN 106

Query: 976  NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC-----DVSIG 1030
            + K G T+   I+                SI+P+    ++I +  +FE+         +G
Sbjct: 107  SIKKGNTLNCFIV----------------SIEPT----AKIITLTMFEQLKPQSKQFKVG 146

Query: 1031 QRVTGYVYKVD--NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV-- 1086
            Q+V   VY +   NE     IS      + I+ +    S+ +  + +    K +   +  
Sbjct: 147  QQVDAIVYGLTSVNEITCW-ISPTQIGTIEIISNFKNISQFKSLKEKNTFVKCLIKSIGI 205

Query: 1087 -----LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
                 LSI KE                     ISN+ M+     GDI+ G I ++  G  
Sbjct: 206  DNKIYLSIGKE--------------------SISNEKMKV----GDIMIGLIKEV--GNL 239

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
             + VQ+  +L G V   +L            DE + +PLS Y     +   V  I     
Sbjct: 240  SIKVQLYNNLSGEVRLIDLN-----------DELRTNPLSIYKTDTLIMVCVKSI----- 283

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE-----DLSPNMIVQGYVKNVT 1256
            G   + LS   SL G+ +        +++   KH   ++     D +    V G+V   T
Sbjct: 284  GKEGILLSTYKSLLGLKTW-------EMNPKYKHQRSVKRSITTDFTVGAQVWGFVIEKT 336

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
             +   + L  +L A + + ++    + S +    +G+LV   V+S EP    +E +L+  
Sbjct: 337  QQIIRVELKGQLIAILQVEDVGPFLLSSCD----VGRLVR-VVISSEP---TIEGSLQVV 388

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-- 1374
             +             + V DI+  +I  +++YGLF+  +N  + GL H+SEL ++ VD  
Sbjct: 389  KAHLHVDKTALTPKTIEVNDIIPLEIISIKNYGLFV--KNKKVSGLAHISELDDEPVDPE 446

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRR----ISLGMKSSYFKNDADNLQMSSEEESDEAIEE 1430
             I+ +Y  GE V  K +  +K K +        +K  +F++      +    + ++ IEE
Sbjct: 447  QIDKLYSVGEFVLGKCIGKEKNKEKGKTIFKFTLKPEHFQSIDMEQYLKCNWDQEDPIEE 506

Query: 1431 VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV-------------- 1476
            +    + + +  S++ ++    +  D  + +    +++  +  ++               
Sbjct: 507  IYQPLKPTKI-ISTLPIKSFLTQLSDLTTTINNNNKNKNKLETIKEQEEEEEEEQVENKQ 565

Query: 1477 -NLDDE--QPDMDNGI-SQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1532
             N DDE     + N I S+ +   ++ + IDE     +KKK+K E+ +     E+ + E+
Sbjct: 566  DNDDDEFKSTSLINSILSKKRKEINDDEQIDEDEITDSKKKQKTEKNKNKNKLEQEIQER 625

Query: 1533 D--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            +        AP  P +FER++  +PNSS++WIK+M++ L ++++ KAR I ERA++ I  
Sbjct: 626  EDLLANNNVAPEGPQDFERMILGTPNSSYIWIKFMSYYLGLSEINKAREIGERAIKKIIP 685

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1644
             +  E+ NIW+A +NLEN YG P  ++++K+FQR++QY DPK ++L ++ + E T + + 
Sbjct: 686  TQVLEQRNIWIAMYNLENLYGTP--DSLLKLFQRSIQYQDPKTMYLTIINILENTGKFER 743

Query: 1645 ADELLYKMIKK-FKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTA 1702
             +E    + KK  KHS KVW R  + LLK    E   +++ RAL  LP+ K IK I++ A
Sbjct: 744  TEEYFKMLFKKDGKHSAKVWCRYGEFLLKCNNIEVFNSILSRALEILPKKKQIKVINKFA 803

Query: 1703 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV--------DLIRGLFER 1754
             LE+K G  +RGR++FEG++S YP RTD+W+IYLD E+R  +         + IR LF R
Sbjct: 804  QLEYKLGDIERGRTIFEGLVSNYPNRTDIWNIYLDMELRDKESIKSSKELKEKIRMLFNR 863

Query: 1755 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             I+L +  + +K  FK++L++EK  G       VK+ A+++VES
Sbjct: 864  TIALKVSDRNIKQFFKRFLQFEKEFGSNFTTNEVKKLAIKFVES 907


>gi|344303010|gb|EGW33284.1| hypothetical protein SPAPADRAFT_137651 [Spathaspora passalidarum NRRL
            Y-27907]
          Length = 1671

 Score =  242 bits (617), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/272 (44%), Positives = 177/272 (65%), Gaps = 4/272 (1%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++VEKAR I ERAL TIN REE E
Sbjct: 1399 LNTRAPQSVGDFERLLIGNPNSSIMWMNYMSFQLQLSEVEKAREIGERALNTINYREEQE 1458

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            K+NIW+A  NLEN +G+  +E +   F+RA QY D   +H  L+ +Y  +E+   ADEL 
Sbjct: 1459 KMNIWIALLNLENTFGS--DETLESTFKRACQYMDSFTMHQKLVAIYTMSEKYDQADELY 1516

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
              M KKF  +   W+     LL +   +  + V+ +AL  LP+  HI+ + + A LEF  
Sbjct: 1517 KVMTKKFGKNISTWVHYGSYLLDRDLHDQTREVLAKALQVLPKRDHIEVVRKFAQLEFVK 1576

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-DLIRGLFERAISLSLPPKKMKF 1767
            G  ++GRS+FEG++S+ PKR DLW++Y+DQEI+  D  D +  LFER ++  L  K+ KF
Sbjct: 1577 GDPEQGRSLFEGLISDAPKRIDLWNVYIDQEIKQDDSKDKVEDLFERVVTKKLSRKQAKF 1636

Query: 1768 LFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1799
             FKK+LE+E+  G+E+ +  VK KA EYV+++
Sbjct: 1637 FFKKWLEFEEDKGDEKMVARVKSKAAEYVQNS 1668



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 168/683 (24%), Positives = 312/683 (45%), Gaps = 48/683 (7%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
           L  IF VG  +   V    D++K    ++I  ++   ++ + +  E    G +L   V S
Sbjct: 164 LSAIFKVGSWLKAKVATQKDERK----KRIEFTIEPEVVNELIEDEDFVSGNLLQCSVVS 219

Query: 109 IEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSD 165
           +EDHG I+  G P  +GF+    L  N  I+   VKPGL++   + S  + R V    ++
Sbjct: 220 VEDHGIIVDTGKPKISGFISNKELT-NGKIEIGSVKPGLVILASIVSQPKGRTVTLRPAN 278

Query: 166 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 225
             T        +   S+D + PGM+V   +  + +NG+++       G++ + HL+  F 
Sbjct: 279 VTTKKPISVTTIS--SVDAIQPGMIVDALIGEVTKNGLIVKVFGLVDGSISLAHLRE-FS 335

Query: 226 TTNWKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDI 276
               K++Y+   KV AR+L V   +   R + L+L  ++L  +  P          VG  
Sbjct: 336 LDKLKHNYSVGSKVKARVLAVLLKNGVKRLI-LSLAHHVL--KLEPEETDALEAFPVGHK 392

Query: 277 YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 336
            D+ ++V  D     +       +ST  Y  I +   +  + LE  Y  GS  + R++G+
Sbjct: 393 LDEVEIVGKDDNYMYV------KLST-FYGQIHNSKIDSDKNLEIDYTIGSKHKSRVIGY 445

Query: 337 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCP 393
             ++ L     ++S         SD+  G  +   +++ V  +S G  V+F    +   P
Sbjct: 446 NSVDDLLIMTFESSLINSEYLNASDIPLGTYIPSCEILKVLPESGGIQVKFFDKFEGFVP 505

Query: 394 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDR 452
              MS+ ++V P +KF+VG ++  RV+G + K + +T +K LV      ILS + +A   
Sbjct: 506 TNQMSDIKLVYPERKFRVGTKVKGRVIGQQGKTVLITLRKALVNLENDEILSKFEDAKIG 565

Query: 453 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 512
             T+  + K   +G  V F+  ++ F P++E+             +GQ+V  RI+     
Sbjct: 566 FKTNAIVEKFVHNGAIVSFFGKLKAFLPKNEISETFVERAQDHLKLGQIVSTRILDINTE 625

Query: 513 SRRINLSF-----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
           + R+ ++      + +  + +  +LV   S+ +  V     N++++ +  +   +G I  
Sbjct: 626 TERLLVTLKQATDLFQAQKATIAELVPGKSIANAFVVEKAKNSILIELENENL-RGVIYD 684

Query: 568 EHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINS--AQQLPSDA 622
             L D + E        ++ G +  ++L+LD +  +  ++ + K SLI +  + Q P+  
Sbjct: 685 GQLTDGNYEQNRAAVKQLEIGSKL-EVLILDKDLRARTVIATGKRSLIEAVRSNQFPTTF 743

Query: 623 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
             +    +V GY+ ++   G FV F G+LTG      A  G  +DLSK +Y  QSV   +
Sbjct: 744 EEVSEGKLVKGYIKSVTNFGLFVSFAGKLTGLVLAKYA--GDVSDLSKKFYKHQSVSCRV 801

Query: 683 LDVNSETGRITLSLKQSCCSSTD 705
           + ++ E  R  LSL  +    +D
Sbjct: 802 IRLDQENKRFLLSLNTNGEVDSD 824



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 161/734 (21%), Positives = 289/734 (39%), Gaps = 130/734 (17%)

Query: 730  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV---- 785
            +EL   E F+ G++++  V    D G++V       + GFI++ +L    +E GSV    
Sbjct: 199  NELIEDEDFVSGNLLQCSVVSVEDHGIIVD-TGKPKISGFISNKELTNGKIEIGSVKPGL 257

Query: 786  -IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 844
             I A+I+   K  R V L          R AN   +         +   +     V+A++
Sbjct: 258  VILASIVSQPKG-RTVTL----------RPANVTTKKPISVTTISSVDAIQPGMIVDALI 306

Query: 845  -EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 903
             E+ K   +V      + SI  A + +++  K  +  +  G  V A V+A+   +   RL
Sbjct: 307  GEVTKNGLIVKVFGLVDGSISLAHLREFSLDKL-KHNYSVGSKVKARVLAVLLKNGVKRL 365

Query: 904  LLLLK----AISETETSSSKRAKKKSSYDVG-SLVQAEITEIKPLELRLKFGIGFHGRIH 958
            +L L      +   ET + +      ++ VG  L + EI       + +K    F+G+IH
Sbjct: 366  ILSLAHHVLKLEPEETDALE------AFPVGHKLDEVEIVGKDDNYMYVKLST-FYGQIH 418

Query: 959  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1018
             ++++ DK     NL  ++ IG    +R+I  ++  D+         I    L  S+I  
Sbjct: 419  NSKIDSDK-----NLEIDYTIGSKHKSRVIGYNSVDDLLIMTFESSLINSEYLNASDIPL 473

Query: 1019 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1078
                  C+          + KV  E   + +    K + F+  +     +L   +R+F +
Sbjct: 474  GTYIPSCE----------ILKVLPESGGIQVKFFDKFEGFVPTNQMSDIKLVYPERKFRV 523

Query: 1079 GKAVTGHVLS-------INKEKKLLRL----VLRPFQDG-ISDKTVDISNDNMQTFIHEG 1126
            G  V G V+        I   K L+ L    +L  F+D  I  KT    N  ++ F+H G
Sbjct: 524  GTKVKGRVIGQQGKTVLITLRKALVNLENDEILSKFEDAKIGFKT----NAIVEKFVHNG 579

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS-GYDEGQFDPLSGYDE 1185
             IV                           F +LK     + +S  + E   D L     
Sbjct: 580  AIVS-------------------------FFGKLKAFLPKNEISETFVERAQDHLK---L 611

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ V  ++L+I+     T  + ++L+ + D   +  ++               I +L P 
Sbjct: 612  GQIVSTRILDINTE---TERLLVTLKQATDLFQAQKAT---------------IAELVPG 653

Query: 1246 M-IVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVE---SPEKEFPIGKLVAGRVL 1300
              I   +V         I L +  L   +    L+DG  E   +  K+  IG  +   +L
Sbjct: 654  KSIANAFVVEKAKNSILIELENENLRGVIYDGQLTDGNYEQNRAAVKQLEIGSKLEVLIL 713

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
              +  ++ V  T K S       ++       +  G +V G IK V ++GLF++     L
Sbjct: 714  DKDLRARTVIATGKRSLIEAVRSNQFPTTFEEVSEGKLVKGYIKSVTNFGLFVSFAG-KL 772

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1419
             GL  +++ + D  D  +  Y+  + V  +++++D+E +R  L            +L  +
Sbjct: 773  TGLV-LAKYAGDVSDLSKKFYKH-QSVSCRVIRLDQENKRFLL------------SLNTN 818

Query: 1420 SEEESDEAIEEVGS 1433
             E +SDE I  V +
Sbjct: 819  GEVDSDEVINPVDT 832



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 103/265 (38%), Gaps = 40/265 (15%)

Query: 565  IPTEHLADHLE-HATVMKSVIKPG-YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 622
            I + ++ D L  ++  ++ V  P  Y    ++ +D ++  + +S +    ++  +  +  
Sbjct: 1059 IASAYITDALNNYSDKLEDVFHPSDYVIASVVDIDTDAKKVAVSLRND--DAVDKTINSI 1116

Query: 623  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
            + +    +V G+V NI   G +V     +      +   D    D  K +  GQ V   +
Sbjct: 1117 ADLSRGDIVKGFVKNIANNGVYVALGRSVYALVRITDLSDSYLKDWKKFFKPGQLVLGKV 1176

Query: 683  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG--SELKWVEGFII 740
                 E GR+ L+LK+S                            NG  + LK  E   +
Sbjct: 1177 -SACKEEGRVLLTLKESEV--------------------------NGELNYLKKFEDLEV 1209

Query: 741  GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDV 793
            G V EG V    DFGV V  +   ++ G     ++A   VE+       G  ++  IL V
Sbjct: 1210 GDVFEGSVKRVTDFGVFVKLDGTVNISGLCHQSEIAENKVENIAGLFGEGDRVKVKILKV 1269

Query: 794  AKAERLVDLSLKTVFIDRFREANSN 818
             + ++ + L +K  +     + N +
Sbjct: 1270 NQEKKQLSLGMKASYFTTASDVNED 1294


>gi|150865289|ref|XP_001384440.2| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Scheffersomyces stipitis CBS 6054]
 gi|149386545|gb|ABN66411.2| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Scheffersomyces stipitis CBS 6054]
          Length = 1699

 Score =  239 bits (611), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 114/270 (42%), Positives = 180/270 (66%), Gaps = 3/270 (1%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++ +KAR I ERAL+TIN R+E E
Sbjct: 1430 LNTRAPQSVADFERLLVGNPNSSILWMNYMSFQLQLSEADKAREIGERALKTINYRDEQE 1489

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLNIW+A  NLEN +G   +E++ ++F+R+ QY D   +H  L+ +Y  +E+   A+EL 
Sbjct: 1490 KLNIWIALLNLENTFGT--DESLEEIFKRSTQYMDSLTMHQKLVSIYSMSEKYYQAEELY 1547

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
              M KKF  S  VW++    LL ++ QE    V+ +AL +LP+  HI+ + + A LEF  
Sbjct: 1548 KVMTKKFGKSISVWVQYGSFLLDRKLQEETHEVLAKALQTLPKRDHIEVVRKFAQLEFSK 1607

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1768
            G A++GRS+FEG++++ PKR DLW++Y+DQEI+  +   +  +FERA++  L  K+ KF 
Sbjct: 1608 GDAEQGRSLFEGLVADAPKRIDLWNVYVDQEIKQDNKSKVEDIFERALAKKLSRKQAKFF 1667

Query: 1769 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            F K+L +E+  G+E+    +K +A+EY +S
Sbjct: 1668 FTKWLAFEEEKGDEQMAARIKARAVEYAQS 1697



 Score =  187 bits (476), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 178/684 (26%), Positives = 321/684 (46%), Gaps = 52/684 (7%)

Query: 49  LPTIFHVGQLVSCIVLQ--LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 106
           L T+F +GQ +   V+Q     ++ +  K++I L++    + + L  E +  G  L   V
Sbjct: 182 LKTLFSIGQWLRAKVVQPSSSQNQNQKQKKRIQLTIEPETVNQPLEDEDLIPGNALQCSV 241

Query: 107 KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV---KPG--LLLQGVVRSIDRTRKVVY 161
           KS+EDHG I++ G    +GF+    +     +DV   KPG  LL   V +S  RT  +  
Sbjct: 242 KSVEDHGIIMNTGRDGLSGFISNKEIKNTPDLDVEILKPGKVLLTSIVSKSASRTVNLRP 301

Query: 162 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
           + S   +    VT      S+D ++PG++V   V  + +NG+++        T+++  LQ
Sbjct: 302 IHSTSVSKKSAVTSIS---SVDAVLPGILVDALVADVTKNGLIVKVFGLVDATINLAQLQ 358

Query: 222 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLLHNRAPPSHVKVGDIYDQ 279
             F     K+ Y     + AR++ V   + +  L L+  P+ +   +  S+    + +  
Sbjct: 359 E-FDFNALKHKYAIGNNIKARVMAVLTRAGSKKLILSHLPHAISYTSTASNPDALEAFP- 416

Query: 280 SKVVRVDRGLGLLLDIPSTPVSTPAYV-------TISDVAEEEVRK---LEKKYKEGSCV 329
                    +G +L+      S P YV        +  V   ++ K   LE  +  GS  
Sbjct: 417 ---------IGHVLEDAEVVGSDPNYVFLKFGGSILGQVHNSKIDKDKTLEHDFNLGSKH 467

Query: 330 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPG 386
             R++GF  ++ L    +++          SDV  G  VK  ++I V  ++ G +++   
Sbjct: 468 SARVIGFNSIDNLLVLTMESHVINSQYLHASDVPNGTAVKSCEIIKVLPEAGGIVIKVLD 527

Query: 387 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSS 445
             +   P  HMS+ ++V P +KFKVG+++  RVL  +  ++ VT KK+LV      +L+ 
Sbjct: 528 EFEGFVPGSHMSDIKLVYPERKFKVGSKVRGRVLSKQGNKLVVTFKKSLVNIEDDEVLAR 587

Query: 446 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 505
           + +A     T   + K   +G  V F+  ++ F P++E+        S    +GQ V  R
Sbjct: 588 FEDAKIGFKTPAIVEKFVHNGAIVSFFGNLRAFLPKNEISETFVSNASDYLRLGQTVNVR 647

Query: 506 IMSSIPASRRINLSF-----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 560
           ++      +R+ ++      +    + S DDL    S+V+  V   T ++V+V +  +G 
Sbjct: 648 VLDVKQEEKRMLVTLRHSSELTNTQKSSIDDLQPGKSIVTVSVVEKTKDSVIVEL--EGN 705

Query: 561 S-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQ 616
           S +G I T HL D + E        +  G +  ++LVL  D ++  +++SAK SLI++A+
Sbjct: 706 SLRGVIYTGHLTDGNYEQNRAYAKKLSIGEKL-EVLVLEKDLKARTVIVSAKKSLIDAAK 764

Query: 617 Q--LPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 673
           Q  +P+    I   N ++ G+V ++   G FV F G+LTG      A   +  DL K +Y
Sbjct: 765 QDAIPAYFKDIKVDNKMLRGFVKSVTNKGLFVSFAGKLTGLVLAKYATSNENEDLLKKFY 824

Query: 674 VGQSVRSNILDVNSETGRITLSLK 697
             QS+   +++++ E  R  L+LK
Sbjct: 825 KYQSIACRVINIDEENKRFLLTLK 848



 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 259/1120 (23%), Positives = 470/1120 (41%), Gaps = 154/1120 (13%)

Query: 343  ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 402
            +T + K SA   +    + V PG++V   V  V   G IV+  G V A   L  + EF+ 
Sbjct: 304  STSVSKKSAVTSISSVDA-VLPGILVDALVADVTKNGLIVKVFGLVDATINLAQLQEFDF 362

Query: 403  VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSY---AEATDRL----IT 455
                 K+ +G  +  RV+ V    +T    K L+ S L    SY   A   D L    I 
Sbjct: 363  NALKHKYAIGNNIKARVMAV----LTRAGSKKLILSHLPHAISYTSTASNPDALEAFPIG 418

Query: 456  H----GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SS 509
            H      +   + +  F++F   + G    S++  D   E    +++G     R++  +S
Sbjct: 419  HVLEDAEVVGSDPNYVFLKFGGSILGQVHNSKIDKDKTLEHD--FNLGSKHSARVIGFNS 476

Query: 510  IPASRRINL-SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
            I     + + S ++    +   D+    ++ S  +  V P A  + +      +G +P  
Sbjct: 477  IDNLLVLTMESHVINSQYLHASDVPNGTAVKSCEIIKVLPEAGGIVIKVLDEFEGFVPGS 536

Query: 569  HLADHLEHATVMKSVIKPGYEFD-----QLLVLDNESSNLLLSAKYSLINSAQ-----QL 618
            H++D          ++ P  +F      +  VL  + + L+++ K SL+N        + 
Sbjct: 537  HMSDI--------KLVYPERKFKVGSKVRGRVLSKQGNKLVVTFKKSLVNIEDDEVLARF 588

Query: 619  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 678
                      ++V  +V N    G  V F G L  F P+++  +   ++ S    +GQ+V
Sbjct: 589  EDAKIGFKTPAIVEKFVHN----GAIVSFFGNLRAFLPKNEISETFVSNASDYLRLGQTV 644

Query: 679  RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 738
               +LDV  E  R+ ++L+ S                     +  + K +  +L+  +  
Sbjct: 645  NVRVLDVKQEEKRMLVTLRHSS-------------------ELTNTQKSSIDDLQPGKSI 685

Query: 739  IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 798
            +  SV+E K  +S    V+V  E +S + G I    L     E        +    K E 
Sbjct: 686  VTVSVVE-KTKDS----VIVELEGNS-LRGVIYTGHLTDGNYEQNRAYAKKLSIGEKLEV 739

Query: 799  LV---DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVL 854
            LV   DL  +TV +   +   S   A K+       KD+ V ++ +   V+ V    L +
Sbjct: 740  LVLEKDLKARTVIVSAKK---SLIDAAKQDAIPAYFKDIKVDNKMLRGFVKSVTNKGLFV 796

Query: 855  SLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE 914
            S       +  A  +  N  +   K+F   QS+   V+ +   +   R LL LK ++ ++
Sbjct: 797  SFAGKLTGLVLAKYATSNENEDLLKKFYKYQSIACRVINIDEENK--RFLLTLKDVNGSK 854

Query: 915  TSSSKRA--------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
               S+          K    +  G   +A I  +K  +L ++      GRI  TE  +  
Sbjct: 855  NIDSEAVVNPVDTSKKLIGDFVPGIATKAVIKSVKGTQLNVQLADNLQGRIAATECFNSW 914

Query: 967  SNVVENL--FSNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVS 1014
            + + +     S F  GQ +  +II   +  + K          K+ + ELS+    L  S
Sbjct: 915  NEIKDKKQPLSQFHKGQVIDVKIIGFHDAKNHKFLPITHTRSNKNIILELSLIKKDLESS 974

Query: 1015 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1074
                +L F    +  G +   +V  +   +   ++S +++ ++  ++     S   + + 
Sbjct: 975  TPYQELTF--SSIVPGSQHIVFVNNIAKGYVWASLSPNIRGRISFMELTDNVSVFDDLEN 1032

Query: 1075 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGG 1131
               IG A++  V  ++ E   + L  R                NM   I +   G     
Sbjct: 1033 NLPIGSAISATVKEVDNEHHSVVLTARK---------------NMVASIKDVKVGQKYPA 1077

Query: 1132 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL-SGYDEGQFVK 1190
            RI K+      ++V++G  +      T        D L  Y     D L S +   +F  
Sbjct: 1078 RILKVRDTY--VLVELGEKVVASAFIT--------DALDNYS----DKLESVFTTNEFAT 1123

Query: 1191 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1250
              VL+I      +  + +SLR           +D  TD     K +  I DL+   +V+G
Sbjct: 1124 ATVLDID---TDSEKIAVSLR-----------TDSPTD-----KVINSIADLNRGDVVKG 1164

Query: 1251 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1310
            +VKNV + G ++ L R + A V +++LSD Y++  +K F   + + G++ + +    RV 
Sbjct: 1165 FVKNVANNGVYVSLGRSVHALVRVADLSDAYLKDWKKYFKPHQPILGKISACKE-EGRVL 1223

Query: 1311 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELS 1369
            +TLK S+  +   + +    +L VG+I  G +KR   +G+FI ++ T N+ GLCH S+++
Sbjct: 1224 MTLKESEV-SGELNVLKRFDDLVVGEIFEGSVKRATDFGVFIKLDGTLNITGLCHHSQIA 1282

Query: 1370 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
            +  VDN+ +++  G++VKVK+L +D +K+++SLGMK+SYF
Sbjct: 1283 DKDVDNVTSLFGEGDRVKVKLLAIDSDKKQLSLGMKASYF 1322



 Score = 45.1 bits (105), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 6/162 (3%)

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G  I +  + +  V  S++SD  +  PE++F +G  V GRVLS +    ++ VT K S  
Sbjct: 520  GIVIKVLDEFEGFVPGSHMSDIKLVYPERKFKVGSKVRGRVLSKQ--GNKLVVTFKKSLV 577

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                   +    +  +G      +++    G  ++    NL      +E+SE  V N   
Sbjct: 578  NIEDDEVLARFEDAKIGFKTPAIVEKFVHNGAIVSFFG-NLRAFLPKNEISETFVSNASD 636

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1420
              R G+ V V++L V +E++R+ + ++ S   ++  N Q SS
Sbjct: 637  YLRLGQTVNVRVLDVKQEEKRMLVTLRHS---SELTNTQKSS 675


>gi|332030070|gb|EGI69895.1| Protein RRP5-like protein [Acromyrmex echinatior]
          Length = 1313

 Score =  239 bits (611), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 227/389 (58%), Gaps = 11/389 (2%)

Query: 1417 QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV 1476
            Q+ ++E   E   EV    +S + +    ++ + D +S D   +   ++  R  VP    
Sbjct: 925  QVPNKENKKETKREVEE-EKSKIKDIDENSLSESDEDSVDESEMKANKLVKRLRVPEFGF 983

Query: 1477 NLDDEQ-----PDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEER--EQEIRAAEERL 1529
            + D +      P+++      Q   +E K   +K    A ++ ++ER  E+EIR  EE L
Sbjct: 984  SWDIKAKLAAFPNVETSSDDEQEFEEELKQKKKKKKLSATERREQERQKEREIRQREEAL 1043

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            +   AP + D+F+RL+ SSP+SS VW++YMA+ L   +++KAR++A RA++TIN REENE
Sbjct: 1044 VSNQAPNSIDQFDRLILSSPDSSLVWLQYMAYHLQATEIDKARAVARRAIKTINFREENE 1103

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            +LN+W A+ NLE+ YG    E++  VFQ A++  D  KV++ +L ++    +    ++L+
Sbjct: 1104 RLNVWNAWLNLESRYGTA--ESLNDVFQEAVRTNDAYKVYMHMLTIHADAGRKTELEKLI 1161

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
              +I KFK   + W+     LLK   +E  + ++QRAL SLP  +H+  + + A LE K 
Sbjct: 1162 GTVISKFKQDPQTWIDCGAALLKIGMKEKSRQIMQRALQSLPASQHVNLLVRFANLENKL 1221

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1768
            G  +R +++FE ILS YPKR D+WS Y+D  I+  D+DL R + E+A   +L P+KMK L
Sbjct: 1222 GDKERAQTLFENILSSYPKRIDVWSCYVDCLIKSKDIDLARKVLEQACVQTLSPRKMKIL 1281

Query: 1769 FKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            F K++ +E+  G  E +  V+Q A +YVE
Sbjct: 1282 FMKFINFEEKYGTSEAVARVRQMAADYVE 1310



 Score =  108 bits (270), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 206/443 (46%), Gaps = 26/443 (5%)

Query: 150 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 209
           ++++D    V+ LS+    +      D+  +S+D+L PG  +S  V  +L NG+ + F  
Sbjct: 142 IKTVDNM-SVIKLSTKRKKIDSANVHDI--MSLDVLTPGTKLSLYVTKVLSNGLQVRFGK 198

Query: 210 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS 269
              G ++  +L N   T      Y  + +V   +L++ PT +    +L    L + +   
Sbjct: 199 NNVGYINRIYLNNPLST------YVDNMEVIGTLLYILPTVKLAYFSL----LTDISEKE 248

Query: 270 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 329
            + VG+I + ++V+  +   G++  +  + +    Y+++         K+  ++KE S  
Sbjct: 249 KLPVGNIINNARVLYRESS-GIIFKLSKSGLR--GYISLRR-TNVPFTKIPIEFKESSTH 304

Query: 330 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG-V 388
           + R+L +  +E      ++    +   F+ SD+  G ++   ++ +++  + +    G +
Sbjct: 305 KCRVLAYNWMEHFYVCTMEEEILKQKYFSASDLSIGDILTVTIVHIETSRSNIHVQAGKI 364

Query: 389 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYA 447
             + P+ H+S+  +     K KVG  +  RVL   K  ++  T K++LVKSKL +L  + 
Sbjct: 365 CGIVPMEHISDSGL-SALHKLKVGDNVEARVLDKNKINQVKFTLKQSLVKSKLPVLHDFG 423

Query: 448 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 507
           EA   L  HG I  I K+G  VRFY  ++G+ PR  L  D   + +  + VGQ V   + 
Sbjct: 424 EAKCGLKYHGTIGIINKNGMLVRFYGIIKGWVPRITLNSD-TYDMNWNFSVGQTVTVCVE 482

Query: 508 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK---GT 564
           S      R+ L  + +  + S    + +G ++ G V   +   + + +  +       G 
Sbjct: 483 SVEKDQCRMTLRIVSEKEKQSIS--LSIGDIIEGTVSESSIKGIYLKIQKEDNENVVTGF 540

Query: 565 IPTEHLADHLEHATVMKSVIKPG 587
           +P+ H+A  +E  +++ S   PG
Sbjct: 541 LPSGHMAPCIEVGSLLASRCSPG 563



 Score = 47.4 bits (111), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 39/229 (17%)

Query: 563 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 622
           G +P EH++D    A      +K G   +  ++  N+ + +  + K SL+ S   +  D 
Sbjct: 366 GIVPMEHISDSGLSAL---HKLKVGDNVEARVLDKNKINQVKFTLKQSLVKSKLPVLHDF 422

Query: 623 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
                    HG +  I + G  VRF G + G+ PR   ++    D++  + VGQ+V   +
Sbjct: 423 GEAKCGLKYHGTIGIINKNGMLVRFYGIIKGWVPRI-TLNSDTYDMNWNFSVGQTVTVCV 481

Query: 683 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 742
             V  +  R+TL +                   +EK ++  S               IG 
Sbjct: 482 ESVEKDQCRMTLRIVSE----------------KEKQSISLS---------------IGD 510

Query: 743 VIEGKVHESNDFGVVVSFEEHSD---VYGFITHHQLAGATVESGSVIQA 788
           +IEG V ES+  G+ +  ++  +   V GF+    +A   +E GS++ +
Sbjct: 511 IIEGTVSESSIKGIYLKIQKEDNENVVTGFLPSGHMA-PCIEVGSLLAS 558


>gi|281210740|gb|EFA84906.1| HAT repeat-containing protein [Polysphondylium pallidum PN500]
          Length = 936

 Score =  239 bits (610), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 192/307 (62%), Gaps = 30/307 (9%)

Query: 1519 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1577
            EQ+I+  E+ L + +  P +  +FER++  SPNSSF+W+KYM+F L + ++ KAR I ER
Sbjct: 629  EQDIKEKEDLLSDHNIQPESSQDFERVLLGSPNSSFIWVKYMSFYLGLNEIHKAREIGER 688

Query: 1578 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1637
            AL+ I   E  E  N+W+A FNLEN YG+  +++++K+FQ+A+QY DPK ++ +++ + E
Sbjct: 689  ALKKIIPTEVLELRNVWIALFNLENMYGS--KDSLLKLFQKAIQYQDPKTMYFSIVNILE 746

Query: 1638 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIK 1696
             T +    +E      KKF+HS KVW R  + L++  + +    +++RA  SLP+ K ++
Sbjct: 747  ATSKFDAEEEYFKMFFKKFRHSAKVWCRYGEFLIRANKVDLFHQILKRATESLPKRKQVE 806

Query: 1697 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD------------ 1744
             IS+   LEFK G A+RGR++FEG++S YP RTDLW++YLD EI+L +            
Sbjct: 807  VISKFGQLEFKLGEAERGRTIFEGMVSSYPTRTDLWNVYLDMEIKLFNEHIKQQQDSSNN 866

Query: 1745 --------------VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1790
                          +  IR LFER I+L    + +K  FK+YL++EK  G+++ IE+VKQ
Sbjct: 867  NSMTNQQLQQQQSIIKRIRQLFERTITLKTSDRNIKQFFKRYLQFEKDNGDQQSIEHVKQ 926

Query: 1791 KAMEYVE 1797
             A+ YVE
Sbjct: 927  SALAYVE 933


>gi|395334532|gb|EJF66908.1| U3 snoRNP-associated protein Rrp5 [Dichomitus squalens LYAD-421 SS1]
          Length = 1492

 Score =  238 bits (608), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/265 (43%), Positives = 179/265 (67%), Gaps = 3/265 (1%)

Query: 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1593
            AP +  +FERL+  SPNSS++W++Y+AF L +++++KAR IA+RAL+TIN REE EKLN+
Sbjct: 1221 APESNSDFERLLLGSPNSSYLWVRYIAFQLQISEIDKAREIAKRALKTINFREEQEKLNV 1280

Query: 1594 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1653
            W+A  NLEN YG   EE++   F+ A ++ D K +HL +  ++E++++ + A+E   K  
Sbjct: 1281 WIALLNLENVYGT--EESLEATFKDAARHNDSKTIHLRMAEIFEQSDKLEKAEEQYKKTC 1338

Query: 1654 KKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            KKF  S KVW    +  LK+   E  + ++ R+L SL + KH+K I + A LE+K G  +
Sbjct: 1339 KKFSQSSKVWSLFGEHYLKRGMLEEARKLLPRSLQSLEKRKHLKTICKFAQLEYKLGDPE 1398

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
            RG+++FEGI+  +P+R D+WSIY+D E   GD++ +R LF R ++L +   K K  FKK+
Sbjct: 1399 RGKTIFEGIVDSHPRRWDMWSIYMDMEAGQGDINSLRNLFNRVLTLKMTSHKAKSFFKKW 1458

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVE 1797
            LE E+ +G+EE    VK KA+E+ +
Sbjct: 1459 LELERRLGDEEGAHAVKTKAIEWTQ 1483



 Score =  194 bits (494), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 191/724 (26%), Positives = 325/724 (44%), Gaps = 75/724 (10%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPI----LDNEIEANED 46
           MK+ G V  V    L++ LP  L            L    ++++ +     D+E E +  
Sbjct: 135 MKILGQVVAVEPLALIVSLPNQLFAHVPITHISTQLTHTLESMEDVEMGNSDDEDEDSSP 194

Query: 47  NLLPTIFHV---GQLVSCIV-------------LQLDDDKKEIGKRKIWLSLRLSLLYKG 90
           + +P +F +   GQ V  +V             L    D+ +   R++ L+L    + +G
Sbjct: 195 SGVPDLFEIFRPGQYVRAVVTAVHPPGTTDVSGLGRARDEVQKASRRVELNLVPEKVNEG 254

Query: 91  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS-GIDVK--PGLLLQ 147
           +    ++ G  ++A VKSIEDHGYIL  G+   +GFL   +  + S G + K   G LL 
Sbjct: 255 VVKSDLRTGFTMSAAVKSIEDHGYILDLGMSDVSGFLSFKDAQKGSWGTEKKLHIGQLLD 314

Query: 148 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 207
             V  +    +   +S DP T+S     ++  +S   +VPG +V + V ++  +G++L  
Sbjct: 315 VAVVKMSGNGRTCNVSVDPKTISTASITEVSNVSS--IVPGALVQSLVTAVQSDGLVLQV 372

Query: 208 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDP-TSRAVGLTLNPYLLH-- 263
           L YF GT+D FHL    P  +    Y   +KV ARIL+ ++P T     L+L  +++   
Sbjct: 373 LGYFDGTIDQFHLVPGQPEVH----YQVGQKVKARILYDINPSTPPRFALSLADHVVRFT 428

Query: 264 NRAPPSHVK---------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 314
            ++P +            +G I +  KV RV+   GL++++ S       ++ IS  ++E
Sbjct: 429 TKSPSADAATTDLRNAYPIGTILEAVKVARVESERGLVVNVGS---GIEGFIHISQTSDE 485

Query: 315 EVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK 371
            V  L      +K G   R R+ G+  L+G+    L+AS         +DV+ G V+KG 
Sbjct: 486 HVPTLSASSGAWKLGMVHRARVTGYYPLDGILQLSLRASVLGQKFLQVADVQVGEVIKGT 545

Query: 372 VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITV 429
           V  +      V   G V  +    H ++  +  P K+FK G+ L  RVL V  + KR+ +
Sbjct: 546 VKKLTDSALFVSISGNVDGVIWPNHYADIALKHPQKRFKPGSSLKCRVLVVDPERKRVAL 605

Query: 430 THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 489
           T KKTLV+S L  ++ +++A   ++TH  + K+      V  YN ++   P  E      
Sbjct: 606 TAKKTLVESTLPTITQFSDAQVGVLTHAVVFKVSDKSLQVELYNNLKATVPAREASETTV 665

Query: 490 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP----TRVSEDDLVKLGSLVSGVVDV 545
              SS + +G+ V+ RI +  P + RI  S         + +++   V +G +V GV+  
Sbjct: 666 PSLSSAFPIGKPVQVRITAVDPETSRITASIRQASPNYKSAITDISGVDIGDIVEGVISD 725

Query: 546 VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLLVLD-NESSNL 603
           V  +  VV  +        +   +LA+  E +   ++S +K G +   L+V   N     
Sbjct: 726 VRKDKAVV-ALQPTQVTALLSLNNLANRREVSVAQLRSTLKTGDKLQDLVVTSRNPEKGF 784

Query: 604 LLSA-----KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 658
           +L A     K  L+    QL  D   + P  +V G V      G  V+    ++G    +
Sbjct: 785 VLVAMKPKEKEQLVQK-NQLSIDT--VQPGQLVGGRVLRHARHGALVKITKAISGILHPT 841

Query: 659 KAVD 662
            A D
Sbjct: 842 DACD 845


>gi|340727403|ref|XP_003402033.1| PREDICTED: protein RRP5 homolog [Bombus terrestris]
          Length = 414

 Score =  238 bits (606), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/288 (40%), Positives = 196/288 (68%), Gaps = 3/288 (1%)

Query: 1511 KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK 1570
            +++++ ++E+EIR  EE L + + P + D+F+RLV SSP+SS VW++YMA+ L   ++EK
Sbjct: 124  RREQERQKEREIRQREEALAKNELPNSVDQFDRLVLSSPDSSIVWLQYMAYHLQATEIEK 183

Query: 1571 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1630
            AR++A RA++TIN REE E+LN+W A+ NLE+++G P  E++  +FQ A++  D  K++ 
Sbjct: 184  ARAVARRAVKTINFREEKERLNVWKAWLNLESKFGIP--ESLNDIFQEAVRSNDSLKIYS 241

Query: 1631 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSL 1689
             +L ++    +     + +  MI KFKH  ++W    + LL+   ++  + V+QRAL SL
Sbjct: 242  HMLTVHVEAGRQMELQKTIDTMIGKFKHIPEIWFNCGECLLRMGLKDKSRHVMQRALQSL 301

Query: 1690 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1749
            P  +H+  +++ AI+E K G  +R +++FE ILS YPKR D+WS Y+D  ++  D+D+ R
Sbjct: 302  PASEHVNLMARFAIMENKFGDKERAQTLFEQILSSYPKRVDIWSCYIDSLVKSNDIDIAR 361

Query: 1750 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
             + ERA+  +LPP+KMK LFKK++ +E+  G +E +  V+Q A+EYVE
Sbjct: 362  KVLERAVVQTLPPRKMKILFKKFINFEEQHGTQEDVTRVQQLAVEYVE 409


>gi|389751237|gb|EIM92310.1| nucleic acid-binding protein [Stereum hirsutum FP-91666 SS1]
          Length = 1486

 Score =  237 bits (604), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 118/269 (43%), Positives = 174/269 (64%), Gaps = 3/269 (1%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L+   P +  +FER +  SPNSSF+WI+YM+F L ++++EKAR IA+RAL TIN REE E
Sbjct: 1206 LQTKTPESNADFERNLLGSPNSSFLWIQYMSFQLQLSEIEKAREIAKRALATINFREERE 1265

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLN+W+A  NLEN YG   +E++   F+ A ++CD K VHL L  + E +E+ +  +E  
Sbjct: 1266 KLNVWIALLNLENIYGT--DESLEAAFKDAARHCDSKTVHLRLAAILEESEKLEKTEEHF 1323

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
             +  KKF  S KVW    +   K    E  + ++ R+L SL + KH+K IS+ A L++K 
Sbjct: 1324 KRTCKKFGQSSKVWTLFGEFYFKHDNTEEARKLLPRSLQSLEKRKHLKTISKFAQLDYKL 1383

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1768
            G  +RG+++FEGI+  +PKR DLW+IYLD E    D+  +R LF+R ++  +   K K  
Sbjct: 1384 GDPERGKTIFEGIVDSHPKRWDLWTIYLDMEAGQKDIQHLRNLFDRVLAQKMTSHKAKTF 1443

Query: 1769 FKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            FKK+LE E+ +G+EE    VKQKA+E+ +
Sbjct: 1444 FKKWLELERRLGDEEGATLVKQKAIEWTQ 1472



 Score =  203 bits (516), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 211/782 (26%), Positives = 352/782 (45%), Gaps = 115/782 (14%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG-------LARAADALDPILDNEIE----ANEDNL- 48
           MK+ G V  V    L++ LP  L G        +    AL+ +  NE E    A ED+  
Sbjct: 122 MKILGQVVSVQPLALIVSLPNQLLGHIPITQISSELTTALETMDTNEDEGMSSAGEDDDE 181

Query: 49  --------LPTIFHVGQLVSCIVLQLDDDKKEIG--------------KRKIWLSLRLSL 86
                   L  IF  GQ V C+V  + +     G               R++ LSL    
Sbjct: 182 KKTSAVPDLHEIFEPGQYVRCVVTAVHEAGSTEGMAGVGRGKSAVEKSSRRVELSLLPEQ 241

Query: 87  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLL 146
           + +G+    ++ G  ++A VKS+EDHGYIL+ GL + +GFL    +A++      PG   
Sbjct: 242 VNEGVVKSDLKPGFTMSAAVKSVEDHGYILNLGLTNISGFLSSKEVAKSI-----PGKAK 296

Query: 147 QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG---------ISIDLLVPGMMVSTRVQS 197
             V R +D +  VV LSS+  T +  V+ D  G          S+  ++PG +V   + +
Sbjct: 297 LHVGRILDVS--VVKLSSNGRTCT--VSADSAGRASASLTEVTSVTSILPGELVQCLITA 352

Query: 198 ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDP--TSRAVGL 255
           +L  G+    L +F G VD FHL    PTT +K      +KV AR+L+  P  +     L
Sbjct: 353 VLPTGLNFQVLGFFDGIVDSFHLPPGDPTTLFKIG----QKVKARVLYEIPGHSPPRFSL 408

Query: 256 TLNPYLL---------HNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 303
           +L+P++L          + A P+      +G I +  +V+RV+   GL++++        
Sbjct: 409 SLSPHILALDVKHSETEDEAAPTIKEAYPIGTILEAVRVIRVETERGLVVEVRP---GIQ 465

Query: 304 AYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 360
            ++ IS V+++ V  L      +K  S  R R+ G+  L+GL    LK S  E      S
Sbjct: 466 GFIHISHVSDDHVPSLSPSSGAWKLNSTHRARVTGYHPLDGLLQLSLKTSILEQKFLQVS 525

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           DV+ G VVKG V  +      V   G V  +    H ++  + +P K+FK GA +  RV 
Sbjct: 526 DVQVGEVVKGTVKILTDTALFVSISGAVDGVVFPNHYADILLKQPQKRFKPGANIKCRVF 585

Query: 421 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
            V  + +RI++T KKTLV+S+L I++ + EA   ++TH  I +I +    + F+N ++G 
Sbjct: 586 TVDPERRRISLTAKKTLVESELPIITKFEEAKVGMLTHAVIFRISERRLQIEFFNNIKGS 645

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR----VSEDDLVK 534
            P+ E   D     ++ + VG+ VK RI++  P    I  S           V++   V+
Sbjct: 646 VPQKEAS-DSATPLATAFSVGKPVKVRIIAVNPEDGHITASIRQATAGSEPIVADISGVE 704

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQL 593
           +G  V G V  +  +  ++ + + G  +  +  ++LA+  +     ++  +  G   D L
Sbjct: 705 IGHTVDGDVAEIHSDNALIILKSTGI-RALLSLKNLANARKVPVAQLRGALSVGEHLDDL 763

Query: 594 LVLD-NESSNLLLSAKYSLINSAQQLPSDASHIHP--------NSVVHGYVCNIIETGCF 644
           +V+  N    +++ A     N  +  P+   H HP          VV G V      G  
Sbjct: 764 VVVSRNPEKGIVIVA-----NRPKTKPA-LEHSHPLTIDTVEIRQVVGGRVLRHHRNGTL 817

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ-------SVRSNILDVNSETGRITLSLK 697
           ++    +TG             D+S  Y VG         V++++L ++ E  ++ LS +
Sbjct: 818 LKLSSSVTGTL--------HPTDVSDNYDVGNIFPQIDSIVKASVLSIDKEKKQLVLSSR 869

Query: 698 QS 699
           QS
Sbjct: 870 QS 871



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 9/121 (7%)

Query: 53   FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 112
            F V QLV   VL++D +KK++     + S  LS     ++L  ++EG  +   VK +E++
Sbjct: 939  FQVNQLVKGRVLRIDAEKKQV--ELTFRSGDLSRSKPSITLSDLEEGQKIEGRVKRVEEY 996

Query: 113  GYILHFGLPSFTGFLPRNNLAENSGIDV-------KPGLLLQGVVRSIDRTRKVVYLSSD 165
            G  +       +G   ++ L +N   DV       + G  ++ ++RSID  +K + L   
Sbjct: 997  GLFIEIDGSKLSGLCHKSELTDNKDADVTLALRSFREGDRVKALIRSIDLEKKRISLGLK 1056

Query: 166  P 166
            P
Sbjct: 1057 P 1057


>gi|321477952|gb|EFX88910.1| hypothetical protein DAPPUDRAFT_220970 [Daphnia pulex]
          Length = 1487

 Score =  236 bits (603), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 118/298 (39%), Positives = 191/298 (64%), Gaps = 4/298 (1%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAF 1561
            D +     K +E +  E ++   EE L   + AP T D+F+R+V +SPNSS +W++YMAF
Sbjct: 1185 DRRERAREKLEEAKVNEAKLSQIEEELNNPERAPVTTDDFDRMVLASPNSSILWVQYMAF 1244

Query: 1562 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1621
             L  A++EKAR++A+RAL+ ++ REE EK N+W+A+ NLE+ YG    E      Q A++
Sbjct: 1245 HLENAEIEKARTVAQRALKIMSFREEQEKFNVWIAWLNLEHMYGT--TEGYESTLQEAIR 1302

Query: 1622 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQA 1680
            Y +P K++  +   +E++ +   A+ L   M+KK+K +  VW+      ++  + +  + 
Sbjct: 1303 YNEPFKIYRQMALNFEQSGKFDDAESLYTTMLKKYKQNKSVWINACLFYVRNSKLDTARG 1362

Query: 1681 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1740
            V QRAL  L + +HI  IS+ A LE K G   RG+++F+ ++  YPKRTDLW +Y+D   
Sbjct: 1363 VFQRALSILDKKEHIDLISRFAQLEMKFGQVGRGKTLFDTLMMSYPKRTDLWLVYIDTLT 1422

Query: 1741 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            ++ D++  R + ER I+L LP KKMK +F+K+LE+E   G+EE+ +YV++KA++YVES
Sbjct: 1423 KVDDIESARQVLERCITLQLPAKKMKTIFQKFLEFETHHGDEEKQDYVRKKALDYVES 1480



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 188/842 (22%), Positives = 350/842 (41%), Gaps = 69/842 (8%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI--------LDNEIEANEDNLLPTI 52
           M++   V EV E D+++ LPG ++ +    +   P          D ++EA     L  I
Sbjct: 96  MQVLSRVQEVRELDVLLSLPGRIQAVVPITNISAPYSKLIDMLAQDEDVEAKG---LKEI 152

Query: 53  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 112
              G L  C + ++ +D    G  K+  SL    +   +    + +GM +TA V+S+EDH
Sbjct: 153 LTAGDLFPCSIKEVTND----GSFKVTASLNPVDVNSDIPSTALCKGMKMTAAVQSVEDH 208

Query: 113 GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 172
           GY++  G+ +   FL +        +D+  G ++   V        V  L+    TV   
Sbjct: 209 GYVMDVGILNVRSFLTKV-----PDLDLAVGQIVSVCVTGCQIDGHVATLTLS--TVESV 261

Query: 173 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 232
             K    +++  L+P   +   V  +L  G+ ++F     G +   HL N   + +    
Sbjct: 262 KFKQNVELNLSTLIPATKLHVTVNKVLPQGLTVTF-GNMVGYIHKDHLVNINDSVSA--- 317

Query: 233 YNQHKKVNARILFVDPTSRAVGLTLNPYLLH---NRAPPSHVKVGDIYDQSKVVRVDRGL 289
           Y +     A +L+  P   AV L+L   L+    N      + +G  ++ +       GL
Sbjct: 318 YEKSANYTAIVLYTLPLVNAVYLSLKSSLVKPDLNVNEKDTIALGQFFEATITESTSAGL 377

Query: 290 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 349
            + L+  +       +++ +    E+ R L   +   S  R R+L    L+ +    +K 
Sbjct: 378 FVQLNKKAKGFVPLRHLSDNQDIFEDTRAL---FPVKSRKRCRVLYHASLDDIYICTMKK 434

Query: 350 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE-FEIVKPGKK 408
           S        + D   G +++GK+ +V   G  V     +K   P  H ++   + KP  +
Sbjct: 435 SLITQKALRYEDFIVGEILEGKIDSVSPAGVSVHLGVNLKGFIPKLHWADDPRLKKPELR 494

Query: 409 FKVGAELVFRVLGVKSKRITV--THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 466
           F+VG  +  RVL V   R T+  T KK+++  K+   S  ++    L   G +  IEK G
Sbjct: 495 FRVGEPITCRVLKVMIDRKTIHLTCKKSMLDEKVVAYSCTSQLETNLALKGTVALIEKGG 554

Query: 467 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF----MM 522
             V F++G+ G+ P + L  +   +    +++G+V+ C++  SI  S ++ L+     + 
Sbjct: 555 VLVSFFDGLTGYIPGNRLLKNGITDIHHYFYMGKVIDCKV-ESINESGKVILTLAGSGLT 613

Query: 523 KPTRVSEDDLVKLGSLVSG----VVDVVTPNAVVVYV-IAKGYSKGTIPTEHLADHLEHA 577
           KP  + E  ++ LG++V      V D V  N+  + V I    + G IP EHL+D  + A
Sbjct: 614 KPKSLPEKPILNLGTIVECKVERVYDAVEGNSSGLEVSIPSLETTGIIPVEHLSDFPKAA 673

Query: 578 TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN--SAQQLPSDASHIHPNSVVHGYV 635
           + +    +PG    + +V  +     +L+ K +++N       P     +   S +    
Sbjct: 674 SHLLDCYRPGQVIKEAVVYMSSKLQTVLTLKPNIMNFIKGNGYPKSVDDVAMGSTLPCVA 733

Query: 636 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-------VGQSVRSNILDVNSE 688
                 G F + L       P    V      +S   Y       +  ++   ++ +  E
Sbjct: 734 TLHRPFGVFAQLLC-----PPNKFDVLFPPGKMSPNLYSYMENGTMHMTLEGEVIRIEKE 788

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM-LQSSKHNGSELKWVEGFIIGSVIEGK 747
             +I LS   +C     A  ++ +  +EEKI + L+ S   G  LK +    +G V+ GK
Sbjct: 789 EKKIFLSALNACVPENAARVLEAYLKVEEKIKVHLRESSDEG--LKNLASLKLGDVVVGK 846

Query: 748 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 807
           +    D    + FE    + G +  +  A    +   +I  +++        VD  +K V
Sbjct: 847 LLTEFDSSADLEFELPHGINGIVPAYHHAKKDFKKNDLIVGSVM-------YVDPIMKKV 899

Query: 808 FI 809
           ++
Sbjct: 900 YV 901



 Score = 44.3 bits (103), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 116/291 (39%), Gaps = 40/291 (13%)

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
            GL V  G ++ G +H   L NI              D +S Y++       VL     V 
Sbjct: 291  GLTVTFG-NMVGYIHKDHLVNIN-------------DSVSAYEKSANYTAIVLYTLPLVN 336

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
              +   LSL+SSL                 P  ++ + + ++     +  +   TS G F
Sbjct: 337  AVY---LSLKSSLV---------------KPDLNVNEKDTIALGQFFEATITESTSAGLF 378

Query: 1262 IMLSRKLDAKVLLSNLSDG--YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1319
            + L++K    V L +LSD     E     FP+      RVL    L      T+K S   
Sbjct: 379  VQLNKKAKGFVPLRHLSDNQDIFEDTRALFPVKSRKRCRVLYHASLDDIYICTMKKS--- 435

Query: 1320 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIET 1378
              +Q  +    +  VG+I+ G+I  V   G+ + +   NL G       ++D  +   E 
Sbjct: 436  LITQKALR-YEDFIVGEILEGKIDSVSPAGVSVHL-GVNLKGFIPKLHWADDPRLKKPEL 493

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1429
             +R GE +  ++LKV  +++ I L  K S           +S+ E++ A++
Sbjct: 494  RFRVGEPITCRVLKVMIDRKTIHLTCKKSMLDEKVVAYSCTSQLETNLALK 544


>gi|405973238|gb|EKC37962.1| RRP5-like protein [Crassostrea gigas]
          Length = 1589

 Score =  235 bits (600), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 208/803 (25%), Positives = 363/803 (45%), Gaps = 100/803 (12%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL--------- 48
           M + G V EV+E  L I LP  L G   L + + A    L    + +E++L         
Sbjct: 120 MLILGCVKEVHEYSLSISLPNNLTGTVALTQISPAYTEQLQRLSQMSEEDLMSEDTEVAD 179

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
           LPT+F +G +V+C +L + + K+     K+ LSL    + K L+ E +  GM +   + S
Sbjct: 180 LPTLFKIGMIVTCKILSVQNSKQ--SGVKVKLSLNPQDINKDLTPEGLHNGMAVFGSISS 237

Query: 109 IEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVV--------RSIDR 155
           +ED GY++  G+     F+   +  +     N G  ++ G  +   +        R++  
Sbjct: 238 VEDRGYVVDLGIKGVKAFMKSLDAEKYVQLHNEGFPLRVGQPVTCALKVGEDRMERAVGE 297

Query: 156 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG-VMLSFLTYFTGT 214
           TR  + ++ DP  V+    KD   +  + L PGM V+TRV  + ENG V++ FL+ F G+
Sbjct: 298 TR-TINVTIDPSEVATAQIKDAMEVKFNCLAPGMKVATRVMKVCENGGVVVKFLS-FKGS 355

Query: 215 VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV- 273
           V + HL    P        ++  ++ ARIL++ PT+++V LT  P+++     P    + 
Sbjct: 356 VPVTHLSIKTP--------HKGNQMMARILYIQPTTKSVVLTTLPHIVDYSGAPVKTSLT 407

Query: 274 ----GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 329
               GDI + ++V+  D   G  L I        A  ++  +++E+V  L+ ++K  S  
Sbjct: 408 QYDKGDIIEDARVLYTDHKRGAYLKIQD---GVTALASLKSLSDEKVTDLKAQFKRDSIH 464

Query: 330 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 389
           R R+LG   ++ +    +K S F     +   + PG + + +V+ +   G IV+  G + 
Sbjct: 465 RCRVLGVDLMDNVVHVGMKKSLFSKSFVSLKSLHPGDLFECEVVELKDKGVIVK-SGHIS 523

Query: 390 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYA 447
            + P  H+++  +  P K+F  G ++  RVL   +  K + +T K++LV ++L +L+  +
Sbjct: 524 GIIPKMHLADIPLKMPEKRFIPGKKVKCRVLKNDLSKKSLVLTAKRSLVNTQLPLLTDLS 583

Query: 448 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 507
           +    L T G++ K    G  V FY  V+GF P+ EL  +    P  +++ GQVVKCR++
Sbjct: 584 QLEAGLQTEGYVIKTYSKGVLVGFYANVKGFVPKKELSTEEIAHPEKVFYTGQVVKCRVL 643

Query: 508 SSIPASRRINLSFM--------MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 559
           S       + LSF          K   V ED   ++G  V   V       + V +   G
Sbjct: 644 SWNLDKGTVTLSFKSDDWKQHGSKLANVPED--FQIGKSVDCKVTEKRKTGLDVVLKPSG 701

Query: 560 YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP 619
            S   +P  HL+D L    +M            L V D  S  +L             +P
Sbjct: 702 VS-AFLPRIHLSDSLATCDLM------------LEVTDVGSDGML-------------IP 735

Query: 620 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
                IH               G FV     L G AP     D Q     + Y++GQ+V 
Sbjct: 736 GTVKSIHS------------RFGIFVELPSGLVGLAPNRFVSDRQWQKAKEQYHIGQAVI 783

Query: 680 SNILDVNSETGRITLSLKQSCC--SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV-E 736
           + IL  N +  +  +SL+   C   +T+   ++++ +  +KI   +S    G ++  V +
Sbjct: 784 ARILQSNRDDNKCLVSLRMQECYQGNTEVDLVEDYLMALDKIEDQKSRFPPGIKIGGVYK 843

Query: 737 GFIIGSVIEGKVHESNDFGVVVS 759
             ++G   +  +++  D G+ VS
Sbjct: 844 ASLVGRSDDKMIYKLADSGISVS 866



 Score =  232 bits (592), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 188/593 (31%), Positives = 314/593 (52%), Gaps = 49/593 (8%)

Query: 1241 DLSPNMIVQGYVKNVTSK-GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            +L P  +V+G ++ +  + G  + L       V L++L D Y   P  +F  G+ +   V
Sbjct: 1010 NLDPGNVVEGRLQKLKKRSGILVNLVGGAKGVVCLTDLYDEYQNDPLSKFHQGQHLKCYV 1069

Query: 1300 LSVEPLSKRVEVTLKTS----DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
            + + P  +  +++L+ S    D       E+  + +L VG  + G I +  S  L + I 
Sbjct: 1070 IDLGP-KQTYQLSLRRSRVFNDKSDVKDPEVLGVKSLKVGQELRGYIVKKTSSDLLVRI- 1127

Query: 1356 NTNLVGLCHVSELSEDHVD--------------NIETIYRAGEKVKVKILKVDKEK--RR 1399
              ++ G    ++ S  H+D              + + I   G+KV +K L   +E+  R+
Sbjct: 1128 GRDVFGTIDGADFS--HIDRRTKRLLFNAKIVISTKVIGLDGDKVHLKFLSYKEEESGRK 1185

Query: 1400 ISLGMKSSYFKNDADNLQ-----MSSEEESDEAIEEVGSYNRSSLLE-NSSVAVQDMDME 1453
                  S    N  + L+      S +++  E  +E     R  + + N+S   Q  ++ 
Sbjct: 1186 AIKRQHSVESVNSEEELKPKPGVKSKDKQKTEETQESTQKRRKKVADKNNSDKKQSNELS 1245

Query: 1454 SEDGGSLVLAQIESRASVPPLEVNL------DDEQPDMDNGISQNQGHTDEAKTIDEKNN 1507
            +E           S   +P L+++       D   P  +N     +  +DE+ + + +  
Sbjct: 1246 NEPTS----GSQNSTDELPRLKIDYAFSWDADLTLPPTEN----MENSSDESDSEETQKK 1297

Query: 1508 RHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1566
                KK+  + E  +   E+R LE    P   ++F+R+V  SP+SS VWI+YMA  L  +
Sbjct: 1298 TKKSKKDMTKEEIMLFEFEKRQLEGSVRPEKTEDFDRMVLQSPDSSLVWIRYMAHHLESS 1357

Query: 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626
            ++EKA+++AERAL+TI+ REE E+LN+WVAY NLEN YG P +  + KV +RA+Q  +P 
Sbjct: 1358 EIEKAQAVAERALKTISFREEQERLNVWVAYLNLENMYGTPAQ--LQKVLERAVQQNEPL 1415

Query: 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRA 1685
             V+  L+ +Y ++ + + A++L  KM+KK   +  VWL       +  + E  + ++QR+
Sbjct: 1416 SVYQQLVNIYVKSGKLEEAEQLYNKMVKKHSANKSVWLGFGDFFFRNGRVESARKLLQRS 1475

Query: 1686 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1745
            L SL +  H+  IS+ A +EFK G A+RG++MFE IL  YP+RTDLWS+Y+D  ++ GD+
Sbjct: 1476 LNSLEKRDHVDTISKFAQMEFKYGEAERGKTMFENILVNYPRRTDLWSVYIDMVVKSGDL 1535

Query: 1746 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            +  R LFER I+L +  KKMKF FKK+L++E+  G+E  +  VKQKA EYV+S
Sbjct: 1536 EGARLLFERVINLQMAMKKMKFFFKKFLDFEEKHGDELSVAAVKQKAQEYVDS 1588



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 193/456 (42%), Gaps = 54/456 (11%)

Query: 364 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 423
           PGM V  +V+ V   G +V      K   P+ H+S   I  P K    G +++ R+L ++
Sbjct: 328 PGMKVATRVMKVCENGGVVVKFLSFKGSVPVTHLS---IKTPHK----GNQMMARILYIQ 380

Query: 424 --SKRITVTHKKTLVKSKLAILSSYAEATDR--LITHGWITKIE-KHGCFVRFYNGVQGF 478
             +K + +T    +V    A + +     D+  +I    +   + K G +++  +GV   
Sbjct: 381 PTTKSVVLTTLPHIVDYSGAPVKTSLTQYDKGDIIEDARVLYTDHKRGAYLKIQDGVTAL 440

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 538
           A    L  +   +  + +    + +CR++        +++   MK +  S+   V L SL
Sbjct: 441 ASLKSLSDEKVTDLKAQFKRDSIHRCRVLGVDLMDNVVHVG--MKKSLFSKS-FVSLKSL 497

Query: 539 VSGVVDVVTPNAVVV----YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
             G  D+     V +     ++  G+  G IP  HLAD +      K  I PG +  +  
Sbjct: 498 HPG--DLFECEVVELKDKGVIVKSGHISGIIPKMHLAD-IPLKMPEKRFI-PGKKV-KCR 552

Query: 595 VLDNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           VL N+ S  +L+L+AK SL+N+   L +D S +       GYV      G  V F   + 
Sbjct: 553 VLKNDLSKKSLVLTAKRSLVNTQLPLLTDLSQLEAGLQTEGYVIKTYSKGVLVGFYANVK 612

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 712
           GF P+ +    + A   K +Y GQ V+  +L  N + G +TLS K               
Sbjct: 613 GFVPKKELSTEEIAHPEKVFYTGQVVKCRVLSWNLDKGTVTLSFKSD------------- 659

Query: 713 FLLEEKIAMLQSSKHNGSELKWV-EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 771
                        K +GS+L  V E F IG  ++ KV E    G+ V  +  S V  F+ 
Sbjct: 660 -----------DWKQHGSKLANVPEDFQIGKSVDCKVTEKRKTGLDVVLKP-SGVSAFLP 707

Query: 772 HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 807
              L+ +      +++  + DV     L+  ++K++
Sbjct: 708 RIHLSDSLATCDLMLE--VTDVGSDGMLIPGTVKSI 741



 Score = 41.2 bits (95), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 16/88 (18%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            G++V GR+ K+    G LV  +G    G V  T+L           YDE Q DPLS + +
Sbjct: 1014 GNVVEGRLQKLKKRSGILVNLVG-GAKGVVCLTDL-----------YDEYQNDPLSKFHQ 1061

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSS 1213
            GQ +KC V+++    + T+  +LSLR S
Sbjct: 1062 GQHLKCYVIDLGP--KQTY--QLSLRRS 1085



 Score = 40.4 bits (93), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 31/233 (13%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            +H GD+    + ++     G++V+ G H+ G +    L +I +  P     E +F P   
Sbjct: 497  LHPGDLFECEVVELKDK--GVIVKSG-HISGIIPKMHLADIPLKMP-----EKRFIP--- 545

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
               G+ VKC+VL+   + +      L+ + SL              V+T    L  +  L
Sbjct: 546  ---GKKVKCRVLKNDLSKKSLV---LTAKRSL--------------VNTQLPLLTDLSQL 585

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
               +  +GYV    SKG  +     +   V    LS   +  PEK F  G++V  RVLS 
Sbjct: 586  EAGLQTEGYVIKTYSKGVLVGFYANVKGFVPKKELSTEEIAHPEKVFYTGQVVKCRVLSW 645

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
                  V ++ K+ D +       N   +  +G  V  ++      GL + ++
Sbjct: 646  NLDKGTVTLSFKSDDWKQHGSKLANVPEDFQIGKSVDCKVTEKRKTGLDVVLK 698


>gi|322799748|gb|EFZ20953.1| hypothetical protein SINV_01223 [Solenopsis invicta]
          Length = 321

 Score =  235 bits (599), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/291 (42%), Positives = 190/291 (65%), Gaps = 4/291 (1%)

Query: 1510 AKKKEKE-EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1568
            A+++E+E ++E+EIR  EE L     P + D+F+RLV SSP+SS VW++YMA+ L   ++
Sbjct: 31   AERREQERQKEREIRQREEALASNQTPNSIDQFDRLVLSSPDSSLVWLRYMAYHLQATEI 90

Query: 1569 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1628
            +KAR++A RA++TIN REENE+LNIW A+ NLE+ YG    E++  VFQ A++  D  KV
Sbjct: 91   DKARAVARRAIKTINFREENERLNIWNAWLNLESRYGTA--ESLNDVFQEAVRTNDAYKV 148

Query: 1629 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALL 1687
            ++ +L +     +    ++L+  +I KFK   + W+     LLK   +E  + ++QRAL 
Sbjct: 149  YMHMLTVQADAGRKNELEKLISTVIGKFKQDPQTWIDCGTALLKIGMKEKSRQIMQRALQ 208

Query: 1688 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1747
            SLP  +HI  + + A LE K G  +R +++FE ILS YPKR D+WS Y+D  I+  ++DL
Sbjct: 209  SLPASQHINLLVRFANLENKLGDQERAQTLFENILSSYPKRVDVWSCYVDCLIKSKNIDL 268

Query: 1748 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             R + ERA   +LPP+K+K LF K++ +E+  G  E +  V+Q A +YVE+
Sbjct: 269  ARKVLERACVQTLPPRKIKTLFTKFINFEEKYGTSEAVARVRQMAADYVEN 319


>gi|345490135|ref|XP_001599465.2| PREDICTED: protein RRP5 homolog [Nasonia vitripennis]
          Length = 1396

 Score =  233 bits (593), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 112/264 (42%), Positives = 180/264 (68%), Gaps = 3/264 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P+T D+F+RLV SSP+SS VW++YMA+ L   ++EKAR++A RAL+TIN REE+E+LN+W
Sbjct: 1128 PQTVDQFDRLVLSSPDSSLVWMQYMAYHLQATEIEKARAVARRALKTINFREEDERLNVW 1187

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
             A+ NLE+ +G    E++ +VFQ A++  D +KV+  +L ++    +    ++L   MI 
Sbjct: 1188 QAWLNLESRFGTA--ESLNEVFQEAVKTNDAQKVYTHMLTVHGDAGRQADLEKLTSAMIA 1245

Query: 1655 KFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            KFK + + W+     LLK   ++  + ++QRAL SLP  KH+  + + A LE + G  +R
Sbjct: 1246 KFKQNPETWISCGTALLKIGMKDKSRHIMQRALQSLPATKHVDLLVRFAQLENRLGDKER 1305

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
             +++FE +L+ YPKRTD+WS Y+D  ++ GD+++ R + +RAI+  LPPKKMK LFKKY+
Sbjct: 1306 AQTLFEQVLTSYPKRTDVWSSYVDSLVKSGDIEIARKVLDRAITQGLPPKKMKVLFKKYI 1365

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVE 1797
            ++E   G  E +  +++ A++YVE
Sbjct: 1366 DFESKHGTPENVSRIQELAVKYVE 1389



 Score =  147 bits (370), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 201/836 (24%), Positives = 353/836 (42%), Gaps = 92/836 (11%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAAD-------ALDPILDNEIEANEDNLLPTIF 53
           M + G +  V +    + LPG +    +A D       +L  I  NE  + E   +  ++
Sbjct: 68  MVIVGRIFRVTDYHAFVSLPGQISAKLQATDISDSYTNSLKSIAKNEEISEEFKPMSDLY 127

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
             G  V C V   + + K     K+ +SL   L+ + L+  T+ +   +   + S+EDHG
Sbjct: 128 KEGDYVVCYVKSFNPNTK-----KVSVSLEPQLINQSLNPGTLVKRSKVVLSISSVEDHG 182

Query: 114 YILHFGLPSFTGFLPRNNLA-ENSGIDVKPGLLLQGVVRSIDR-----TRKVVYLSSDPD 167
           Y+L  GL +F  FL   ++A E + + V  G  +   V+ +       T KV   +   D
Sbjct: 183 YVLETGLKNFRAFLSIKDIADEETKLFV--GKQIICAVKDVKTAENIYTAKVSIKTKHLD 240

Query: 168 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 227
           TV   +T      S+D L+P    +  V+ +L+NG+ + F     G ++  +LQN+    
Sbjct: 241 TVETNIT------SLDSLIPTAQFALTVKKVLKNGLQVEFGENSIGYINQLYLQNSL--- 291

Query: 228 NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD- 286
              + + + +++   +L++ PT +    +L P      A    + +GD+  ++K V  D 
Sbjct: 292 ---DSFKKGQELVGTLLYIVPTVKFGYFSLLP----QEAEQKLLAIGDVITKAKFVSKDS 344

Query: 287 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 346
           RG+ L L           YV +    E +  K++  + + S  + +IL +  +  +    
Sbjct: 345 RGIILQLK-----KGIQGYVPLKR-TEVQFEKIDSVFTKNSIHKCKILAYDSIARVYICS 398

Query: 347 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 406
           ++    E  V   + ++PG VV+ K+  +   G I    G      P   +S+     PG
Sbjct: 399 MEKKVIEKTVVNKTILQPGHVVEVKITKIKKNGYISVSSGTRNGFVPADQVSD-----PG 453

Query: 407 KK--FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
            K  FKVG  +  RVL    K I  T KK+L++SKL IL    +A    +  G +++I  
Sbjct: 454 YKATFKVGQNVTARVLETSVKNI-FTLKKSLIESKLPILCKMEDAKADAVHDGTVSRITD 512

Query: 465 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 524
            G  +RF++GV+GF P+  L  +      +M  VGQ V   I        ++ LS +   
Sbjct: 513 AGILIRFFDGVKGFIPKKFLNNNTASAKWNMV-VGQTVSTVIKDVDVRETKLILSLVKGA 571

Query: 525 TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL-ADHLEHATVMKSV 583
              +++   K+G +V G+V   +   V + +  K Y +   PT +L A H+         
Sbjct: 572 K--AQNTKFKIGDVVEGIVTDSSAEGVQLRL--KNYGEEA-PTAYLPAGHMS-------- 618

Query: 584 IKPGYEFDQLL----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH---PNSVVHGYVC 636
             P YE  +LL    V     + ++ S   +LI S    P     IH   P   V   V 
Sbjct: 619 --PCYEVGKLLASKTVAGESVTAIVFSTMPTLILSTTFAPEKTYKIHDLKPEDTVMCSVK 676

Query: 637 NIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
            I +    V   L + + F      V    A   ++ Y  Q +   +  +  ++  I+L+
Sbjct: 677 KIHKESVKVLMPLVKSSKFG----TVPAASAGNIESMYENQILIGKVTRIEKDSQEISLT 732

Query: 696 LKQS----CCSSTDASFMQEHFLLE---EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
            + S      S  D   M    +L     K+  L  + +  S  K +    IG  I+G V
Sbjct: 733 TQLSKVWKSVSEHDVKMMTAVDVLSSYLNKVTELSRNVYYTS--KPISKLSIGQRIKGSV 790

Query: 749 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 804
               D G+++  E  ++V G +      G  V  G  ++ ++L +      V+L+L
Sbjct: 791 ESVMDHGLILKLE--NNVKGIVRTSHFTGNVV-PGQKVEGSVLWINYPHEYVELTL 843


>gi|346324040|gb|EGX93638.1| Nucleic acid-binding, OB-fold-like protein [Cordyceps militaris CM01]
          Length = 1774

 Score =  233 bits (593), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 316/1309 (24%), Positives = 552/1309 (42%), Gaps = 163/1309 (12%)

Query: 5    GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN-----------------EDN 47
            G +  +N   L + LP  L G      A+   L N +++                  ED 
Sbjct: 134  GQITRINNLALEVALPNNLTGHVSIV-AISEQLTNRLQSGAKDEDVDEKEDESDGEGEDV 192

Query: 48   LLPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 106
             L +IF VGQ +   VL  +D       KRKI LSLR +    GL+ +       + A V
Sbjct: 193  DLKSIFEVGQFLRAYVLSTVDGAVSGKSKRKIELSLRPTEANTGLTKDDAVPHCTVAAAV 252

Query: 107  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-------VKPGLLLQGVVRSIDRTRKV 159
             S+EDHG I+  G+   +GFLP      N+ ID       ++ G +    V +   + KV
Sbjct: 253  ASVEDHGCIMDLGIDGLSGFLP------NAEIDATFKRERLQEGAVFLSQVTANQGSGKV 306

Query: 160  VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
              L+   D + K      +  +I+  +PG  V+  +     +GV    + +   T D+ H
Sbjct: 307  AQLTLKQDKIGKVSNHPAEATTINTFLPGTAVNVLITGNSSSGVTGKIMGHVDATADLIH 366

Query: 220  LQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL-----------HNRA 266
                   T+ ++ Y    KV ARI+   PTS+   +G+TL P+L+            +  
Sbjct: 367  SGIGPFGTDVESKYKIGSKVKARIICNFPTSKDPKLGITLLPHLMALTKKRPEGPKRSSL 426

Query: 267  PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---Y 323
            P   + +  I +Q  V  V+  +GL +D+    +    +V IS V + +V  L +    Y
Sbjct: 427  PLQVIPIASIVEQCTVRHVEADMGLFVDVGVPGLC--GFVHISRVKDGKVDALYESSGPY 484

Query: 324  KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV----VKGKVIAVDSF- 378
            K GS  + R++G+  ++G+     + +  E       DV  G V    ++  +I  D   
Sbjct: 485  KAGSTHKGRVVGYSEIDGVFQLSFQKTVLEQKYIRQEDVPVGAVLTCDIEKLIINEDGVN 544

Query: 379  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLV 436
            G  +Q   G+    P  H+S+ ++  P KKF+ G ++  RVL   +  KRI +T KKTLV
Sbjct: 545  GLTLQIAEGITGFVPERHLSDVKLQHPEKKFRQGMKIKARVLSNDLIKKRIRLTLKKTLV 604

Query: 437  KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 496
             S+  I+ SY +        G I K+E  G  ++FY+ ++GF P SE+      +PS  +
Sbjct: 605  NSETPIIRSYDDVKVGSQALGTIIKLESSGARIQFYDELRGFLPISEMSEAYIRDPSEHF 664

Query: 497  HVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNA 550
             VGQVV   ++   P  RR+ +S      F ++     ++  + LG +VS  V   + + 
Sbjct: 665  RVGQVVSVHVLDVDPERRRLVVSCKDPGAFGLEKQNALKN--ISLGDIVSAKVTQKSEDQ 722

Query: 551  VVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESS--NLLLS 606
            V V  +     K  +P  HL D    ++   +K V   G     L+V+D   S  ++ L+
Sbjct: 723  VFVE-LEGSLLKAILPVSHLTDKSASKNQFALKRV-SAGQTLSNLVVIDKNDSRRSITLT 780

Query: 607  AKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
             K SL+++A +  L        P  +  G+V NI  T  FV+F G L    P+++     
Sbjct: 781  QKPSLVHAAAEGRLLKSFEQARPGKLFAGFVKNITATAVFVQFAGSLNALLPKARLAPEA 840

Query: 665  RAD----LSKTYYVGQSVRSNILDVN-------SETGRITLSLKQSCCSSTDASFMQEHF 713
            +A     L K   +   + S I D+N       S      ++ K     +  A  +    
Sbjct: 841  QAKPDFGLHKNDSIEVRIVSTIPDLNRIMVAPASAPADQDIAGKSESAKAAPADGLAFGS 900

Query: 714  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 773
            + + K+  ++ ++ N          I+ S ++G++  +N FG   S+++  D       H
Sbjct: 901  ITQAKVTSIKETQLNVQ--------IVDSGVQGRIDVANVFG---SWDDIPD-----PKH 944

Query: 774  QLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 831
             L  AT   G V++  ++ V  AK  R + +S ++       E  + +         E +
Sbjct: 945  PL--ATFHKGQVLRVKVVGVHDAKDHRFLPISHRSAH--SILELTTRQTDLDDTTPNELT 1000

Query: 832  -KDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVI 888
             + L V QT  A V  + + YL ++L P     I     SD  +Q    +  F  G ++ 
Sbjct: 1001 FESLKVGQTHVAFVNNLTQQYLWVNLSPSVRGRISAMEASDDLSQLNDLEGNFPPGSALK 1060

Query: 889  ATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLK 948
              V+++ + +      L L A     ++SS       S     ++  +IT++   ++ +K
Sbjct: 1061 VRVVSINAENNH----LDLSA----RSASSNDIVSWDSIKANMILPGKITKVNERQILVK 1112

Query: 949  FGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IAKSNKPDMKKSFLWELSI 1006
                  G +H+ ++ D+   V     + ++ G+ V   +  + KSNK          LS 
Sbjct: 1113 LSESVSGPVHLPDMADNFDGVNT---TQYRKGEIVRVAVVDVDKSNK-------RLRLST 1162

Query: 1007 KPS--MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1064
            +PS  M +   +  K + +   +S G  V G+V  V ++   + +   + A + I  S  
Sbjct: 1163 RPSRIMSSTLPVKDKEISDIAQLSSGDIVRGFVKNVADKGLFVLLGGQVSALVKI--SNL 1220

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF-- 1122
                L+E++  F + + V G ++ I+   K + + L+          VD       T+  
Sbjct: 1221 SDRYLKEWKDEFQVDQMVKGRIIFIDNAAKQIEMSLK-------SSVVDEDYTPPMTYRD 1273

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            I  G IV G++ K+      +++    ++ G  H +++    V            D    
Sbjct: 1274 ISVGQIVTGKVRKVADFGAFILIDNSANVSGLCHRSQMAENRVQ-----------DATKL 1322

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1231
            Y EG  VK KVLE          V++  R    G+  T   D  TD+D+
Sbjct: 1323 YKEGDVVKAKVLE----------VDVEKRKISFGLKPTLFEDEDTDMDS 1361



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/286 (37%), Positives = 171/286 (59%), Gaps = 11/286 (3%)

Query: 1521 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            EI   +   L+ + P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR +AERA +
Sbjct: 1473 EIEVDKTAELDSNGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREVAERATR 1532

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            TIN+REE EKLN+WVAY NLE  YG   +  + +VF+RA QY DP++VH  L  +Y ++E
Sbjct: 1533 TINMREETEKLNVWVAYLNLEVAYGT--KATIEEVFRRACQYNDPQEVHERLASIYIQSE 1590

Query: 1641 QNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKF 1697
            + K A+ L   M+KKF   +  VW      L   K +    +A++ RA   L        
Sbjct: 1591 KLKEAEALFEAMVKKFGAKTPNVWTNYAHFLHVTKGEPARARALLPRASQQLGSAHAATI 1650

Query: 1698 ISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRGLFE 1753
            +++ A LEF  ++G  +RGR+MF G+L  +PK+ DLW+  LD E+ +  GDV  +R +FE
Sbjct: 1651 VARFAALEFHSEHGEPERGRTMFTGLLDTWPKKGDLWNQLLDLEMGVEGGDVTAVRDVFE 1710

Query: 1754 RAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            R   +  L P++ +  F+++  +E+ V  + + + V  +A E+  +
Sbjct: 1711 RRTRVRGLKPQQAEKWFRRWTAFEEGVDPKGK-DRVTARAREWAAA 1755



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 8/150 (5%)

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G  + ++  +   V   +LSD  ++ PEK+F  G  +  RVLS + + KR+ +TLK    
Sbjct: 545  GLTLQIAEGITGFVPERHLSDVKLQHPEKKFRQGMKIKARVLSNDLIKKRIRLTLK---- 600

Query: 1319 RTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
            +T   SE   I +  ++ VG   +G I ++ES G  I   +  L G   +SE+SE ++ +
Sbjct: 601  KTLVNSETPIIRSYDDVKVGSQALGTIIKLESSGARIQFYD-ELRGFLPISEMSEAYIRD 659

Query: 1376 IETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
                +R G+ V V +L VD E+RR+ +  K
Sbjct: 660  PSEHFRVGQVVSVHVLDVDPERRRLVVSCK 689


>gi|361124585|gb|EHK96666.1| putative rRNA biogenesis protein rrp5 [Glarea lozoyensis 74030]
          Length = 1525

 Score =  232 bits (592), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 118/281 (41%), Positives = 183/281 (65%), Gaps = 7/281 (2%)

Query: 1521 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            EI+      L+ + P++  +FERL+   P+SS +WI+YMAF + ++++ KAR +AERA++
Sbjct: 1239 EIKIDRTGDLDANGPQSVADFERLLLGQPDSSQLWIQYMAFQMQLSELSKAREVAERAIK 1298

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            +INIREE EK+N+W+A  NLE+ YG+  +E+V +VF+RA QY DP+++H  L  ++ ++ 
Sbjct: 1299 SINIREETEKMNVWIALINLESAYGS--DESVDEVFKRACQYNDPQEIHERLASIHIQSG 1356

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFI 1698
            +   AD+L   +IKKF  S  VW      L+      +  +A++ RA  SLP H H+   
Sbjct: 1357 KLDKADDLFQIIIKKFSQSPNVWYNYAHFLMTSLSSPDRARALLPRATQSLPPHTHLALT 1416

Query: 1699 SQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1756
             + A LEF +  G A+RGR+MFEG+LS +PKR D+W+  LD EI+ GD D+IRG+FER  
Sbjct: 1417 LKFAALEFHSEAGSAERGRTMFEGLLSTFPKRLDIWNQLLDLEIQQGDKDIIRGVFERVT 1476

Query: 1757 -SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
             +  + PK  K  F+++ E+E+  G+ +  E VK KA E+V
Sbjct: 1477 RTKGIKPKGAKAWFRRWSEWEEGNGDAKSQERVKAKAEEWV 1517



 Score =  192 bits (488), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 175/638 (27%), Positives = 305/638 (47%), Gaps = 56/638 (8%)

Query: 104 AYVKSIEDHGYILHFGLPSFT--GFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVV 160
           A V S+EDHG ++  GL   T  GF+    + + + +  V+ G +   +V  +    K+V
Sbjct: 2   AAVSSVEDHGLVMDLGLEDTTVKGFMSSKEIGKGTELSKVQEGAVYLSMVTGLSSNGKIV 61

Query: 161 YLSSDPDTVSKCVTKDLKGIS----IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
            LS+D   ++   TK L  +S    ID  +PG  V   V  +   GV+   +     T+D
Sbjct: 62  KLSADTQKIAN--TKKLSYLSEAPTIDAFMPGTAVEILVTDVTARGVIGKVMGMVDVTID 119

Query: 217 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS-----------RAVGLTLNPYLLHN- 264
           + H     P  + +  Y    K+  R++   PT+             +G++L   +++  
Sbjct: 120 LIHSGAALPGKDLEKKYKLGSKIKGRVICNFPTADPPKLGVSLLDHVIGMSLQQAVVNGE 179

Query: 265 -RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK-- 321
            + P   + +  I ++  V +V+ G GL +D+    +S   +V IS V + ++  L +  
Sbjct: 180 KKQPLDVLPLSAILEEVVVRKVEAGHGLFVDVGVKGLS--GFVHISRVKDGKIETLSEVS 237

Query: 322 -KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDS- 377
             YK GS  R R++G+  ++G     L+AS  E       D+K G  VKG +  I V++ 
Sbjct: 238 GAYKLGSTHRGRVIGYNSIDGTFLLSLEASILEQPFLNIEDLKIGETVKGTIEKIVVNAK 297

Query: 378 --FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK-SKR-ITVTHKK 433
              G +V    G+  L P  HM++ +++ P KKFK G  +  RVL    SKR + +T KK
Sbjct: 298 GVGGVLVNLAEGISGLVPEAHMADVKLLHPEKKFKEGMAVTCRVLSTDPSKRQVRLTLKK 357

Query: 434 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 493
           +LV S+ A   SY +    + + G I  + + G  V+FY  ++GF P +E+      +P+
Sbjct: 358 SLVNSEAAPFVSYEDIEVGMQSPGTIINVLQAGAVVQFYGSIRGFLPVAEMSEAYIQDPT 417

Query: 494 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR---VSEDDL--VKLGSLVSGVVDVVTP 548
             + +GQVV   +    P ++++ +S    PT      +  L  +K+G +VS +V   + 
Sbjct: 418 QHFRIGQVVNVHVTKVDPETQKMTVS-CKDPTTFGLAQQTALKNLKVGEIVSALVTEKSS 476

Query: 549 NAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDN-ESSNL-L 604
           + + + +  +   + T+   HL D    ++A+  K  I+ G +   L VL+  ES  L L
Sbjct: 477 DDISLEIEGQSL-RATLSLSHLTDGSSSKNASAFKK-IRVGQKLTDLAVLEKLESKRLVL 534

Query: 605 LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 662
           L+ K SLI +++   L      +  + +VHG+V NI  T  F++F G LTG  P+SK   
Sbjct: 535 LTNKPSLIKASKDRTLLRSIEDVKVDKIVHGFVKNITPTAAFIQFGGGLTGLLPKSKL-- 592

Query: 663 GQRADLSKTYYVG----QSVRSNILDVNSETGRITLSL 696
               D++     G    Q+ +  ++ V+ E G   LS+
Sbjct: 593 --PKDMASLDDFGLKKFQAAQVKVISVDREQGTFVLSM 628



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 187/840 (22%), Positives = 327/840 (38%), Gaps = 135/840 (16%)

Query: 53   FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG----LSLETVQEGMVLTAYVKS 108
            F  G  V+C VL  D       KR++ L+L+ SL+       +S E ++ GM     + +
Sbjct: 331  FKEGMAVTCRVLSTDP-----SKRQVRLTLKKSLVNSEAAPFVSYEDIEVGMQSPGTIIN 385

Query: 109  IEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQGVVRSID-RTRKVVYLS 163
            +   G ++ F   S  GFLP   ++E    D     + G ++   V  +D  T+K+    
Sbjct: 386  VLQAGAVVQF-YGSIRGFLPVAEMSEAYIQDPTQHFRIGQVVNVHVTKVDPETQKMTVSC 444

Query: 164  SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL-TYFTGTVDIFHLQN 222
             DP T        LK + +     G +VS  V     + + L         T+ + HL +
Sbjct: 445  KDPTTFGLAQQTALKNLKV-----GEIVSALVTEKSSDDISLEIEGQSLRATLSLSHLTD 499

Query: 223  TFPTTN---WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ 279
               + N   +K      K  +  +L    + R V LT  P L+  +A      +  I D 
Sbjct: 500  GSSSKNASAFKKIRVGQKLTDLAVLEKLESKRLVLLTNKPSLI--KASKDRTLLRSIED- 556

Query: 280  SKVVRVDRGL-GLLLDIPSTPVSTPAYVTI----------SDVAEEEVRKLEKKYKEGSC 328
               V+VD+ + G + +I  TP  T A++            S + ++     +   K+   
Sbjct: 557  ---VKVDKIVHGFVKNI--TP--TAAFIQFGGGLTGLLPKSKLPKDMASLDDFGLKKFQA 609

Query: 329  VRVRILGFRHLEGLATGIL---------KAS--AFEGLVFTHSDVKP------------- 364
             +V+++     +G  T +L         KAS     G   T   V P             
Sbjct: 610  AQVKVISVDREQG--TFVLSMTDMSEDSKASQQPVAGEALTGDVVNPVDESITSMQNFDI 667

Query: 365  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVGAELVFRV 419
            G + K +V++V      VQ    V+    +  +   +E +K    P KKF     L  RV
Sbjct: 668  GRLTKARVVSVKDTQINVQLADNVQGRIDVSQVFDSWEEIKDRKKPLKKFSAKQILDVRV 727

Query: 420  LGVKSKR----ITVTHK--KTLVKSKLAILSSYAEATDRLIT-------HGWIT---KIE 463
            LG+   R    + ++H+  K++V    A  S   E T   +T         WI     I 
Sbjct: 728  LGMHDARNHRFLPISHRVGKSVVFELSAKPSDQVETTQEPLTLDKVKKGSAWIAFINNIT 787

Query: 464  KHGCFVRFYNGVQGFAPRSELGLDPG--CEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
             +  +V     V+G     E+  D     +  S + VG  ++ R+ +   ++ R++LS  
Sbjct: 788  DNCAWVNLSPNVRGRISLMEMSDDVSRLKDVESNFPVGSAIRARVTNVDASNNRLDLSAR 847

Query: 522  MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 581
             +P        +  G ++ G V   T   ++V  +A G + G +    LAD    A   K
Sbjct: 848  SQPAEKLTLQTLSEGMVLPGKVTRSTERQILVE-LADGLA-GPVHLPDLADDFSQADPTK 905

Query: 582  SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYV 635
               K       ++ +D  +    LS + S +  +  LP      +  S +  N VV G+V
Sbjct: 906  -YTKNDIVRVCVVSVDLPNKRFRLSTRPSRVLDS-SLPVEDPEFTSISQLKANDVVRGFV 963

Query: 636  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
             ++ + G FV   G LT F   S   D    D    + V Q V+  I  V++   +I +S
Sbjct: 964  KSVAKMGLFVNIGGNLTAFVRVSDLSDSYIKDWQSEFEVDQLVKGKITQVDANLNQIQMS 1023

Query: 696  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 755
            LK        +S + ++++     A L                 +G ++ GK+ +  DFG
Sbjct: 1024 LK--------SSVLDKNYVAPITFADLS----------------VGQIVTGKIRKVEDFG 1059

Query: 756  VVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLKTVF 808
            V +  +   +V G     ++A   V       E G  ++A ++ +   ++ + L LK  +
Sbjct: 1060 VFIVLDNSMNVSGLCHQSEMADKRVHDVKKLYEEGDAVKAKVIKIDSEKKRISLGLKAKY 1119


>gi|198413904|ref|XP_002123749.1| PREDICTED: similar to Protein RRP5 homolog (Programmed cell death
            protein 11) [Ciona intestinalis]
          Length = 1581

 Score =  232 bits (591), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 160/575 (27%), Positives = 293/575 (50%), Gaps = 41/575 (7%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E + D++   +  G ++ + + G  + +  +   K+  +++SD +++   K F +G+++ 
Sbjct: 1027 EDVCDIAVGHVTNGEIREIVADGALVRMELRGKGKIFSTDISDEFLDGMLKNFRVGQIIR 1086

Query: 1297 GRVLSVEP----LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
             RV+        L+ R  +  +  D     + +I +++++    I  G IK     G+F+
Sbjct: 1087 CRVIGRSNEGFVLTMRKSLMHEICDLEPVDR-DICDITDVKPKQIFRGIIKVCSESGIFV 1145

Query: 1353 TIENT--NLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM----- 1404
            T+       V   + S+    DH + I+  Y  G  V   ++ V  +  R+ L M     
Sbjct: 1146 TLSRCVHGRVTFANASKFYISDHTEAIKIFY-PGRIVHCCVISVSPQDGRVELSMLERDT 1204

Query: 1405 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQ 1464
                  ND +   +  + + +E   +        L      +V+++  +SE         
Sbjct: 1205 GHCDIINDENRFPLRLKRKREETKTQQKKKKTRILKSAPKSSVENLIKQSEFK------- 1257

Query: 1465 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRA 1524
             E    V     + D  +P             D+  TID      + K++    + EI  
Sbjct: 1258 -EDNIKVATTVGDCDVIEPGF---------VWDDDVTID------SNKEDIMTTDNEI-C 1300

Query: 1525 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            ++ ++ + + P +  E+E+L+    N S +WI++MAF L   ++EKAR++AE++L  I+ 
Sbjct: 1301 SKRKVNDDNPPESAVEWEKLLLLHHNESMLWIRFMAFHLRSREIEKARNVAEKSLTLIDR 1360

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1644
              ENE+LNIW A  NLEN YG   +  + +  +RAL+  D  KV+  ++ +YE + + + 
Sbjct: 1361 SAENERLNIWSALLNLENNYG--CDVTMKQTMERALKCSDQLKVYFRVVKIYEESGKKEK 1418

Query: 1645 ADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAI 1703
            A E+L KM  KF+ + +VWL  ++  +++   +  Q  ++R LLSLP+ ++++ IS+ A 
Sbjct: 1419 AGEMLEKMTNKFRQNKEVWLAHIRHQMEESHYKEAQESLKRCLLSLPKKQNLEIISKFAQ 1478

Query: 1704 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1763
            +EF  G A+RGR+MFE IL  Y KRTD+WSIY+D  ++ G  D  R +F R  SLSL  K
Sbjct: 1479 MEFTLGEAERGRTMFENILENYRKRTDIWSIYVDALVKAGMYDAARDVFNRVTSLSLSSK 1538

Query: 1764 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            KMK  +++++E+E   G ++  + VK+KA++Y ES
Sbjct: 1539 KMKTFYRRFVEFETKHGNDDDAKIVKEKALKYAES 1573



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 177/367 (48%), Gaps = 32/367 (8%)

Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
           K S  +     + D+ PG +V+ K+  V   G  V                   ++  GK
Sbjct: 8   KRSVLDAKYLRYEDIIPGTLVQCKITQVQQKGLQV-------------------VLGSGK 48

Query: 408 K-FKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
           K F  G  +  RVL   +KR  + +THK++LV SKL I+++Y       + HG+I+ I+ 
Sbjct: 49  KIFNEGNVIRCRVLTSSAKRRHLHLTHKQSLVGSKLPIVTNYDVIKRDDVIHGFISNIKP 108

Query: 465 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMK 523
            GCFV+FY+ V GF P  +L   P   P  ++ +GQVVKCR++S+   ++++ LSF  M 
Sbjct: 109 FGCFVKFYDDVTGFVPHHQLSATPVQNPQKLFFIGQVVKCRVISNDAGNKKLKLSFRTMN 168

Query: 524 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE-----HLADHLEHAT 578
             RV E + VK G +V+  V +   + + V ++     +   PT       L+D +E + 
Sbjct: 169 EKRVVEHN-VKPGMMVNVKVIMKEQSHLSVKIMGDESEQSDWPTAMISQYQLSDFVEISR 227

Query: 579 VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 638
            + ++++     +  +V+  +   + +S K+SL+     L  D   +    ++  +V  I
Sbjct: 228 SIFTLVREETVLNDCIVVATK-QQIQVSRKHSLVERG--LKVDFCDLIIGQLLRCFVRQI 284

Query: 639 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
              G FV  +G L G  P+S   D   AD++  +  GQSV + +  +  +  R  +SL+ 
Sbjct: 285 TSYGVFVETVGGLVGLCPKSAICDKYLADVNDRFITGQSVVAVVTGIEDDRKRFLVSLRL 344

Query: 699 SCCSSTD 705
           S C   D
Sbjct: 345 SQCPLID 351



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 169/404 (41%), Gaps = 65/404 (16%)

Query: 929  VGSLVQAEITEIKPLELRLKFGI-----GFH--GRIHITEVNDD-KSNVVENLFSNFKIG 980
            VGS V+ E+  I+     +K        G H  GRIH +EV ++ K NV  +  +N K+G
Sbjct: 852  VGSKVRGEVASIRATTAIVKLTSLPIVHGHHQVGRIHASEVFEECKQNV--SPMNNLKVG 909

Query: 981  QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1040
             T++  +I   +   M   FL E++ + +   V E+           S+ + V     K+
Sbjct: 910  DTISCTVIGVRDV--MTHRFL-EITNRKATRGVIEL-----------SLWRSVPPPGDKI 955

Query: 1041 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS--INKEKKLLRL 1098
            D E+           ++      + P  L     +   GK   G  +   + K    +  
Sbjct: 956  DAEFPFDRSRESYLVEVRPGVRGFIPKLLAMDGGKMGQGKMKQGRCVECIVVKHGDPIMF 1015

Query: 1099 VLR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1157
              R    +G+ +   DI+          G +  G I +I++   G +V++     G++  
Sbjct: 1016 ACRGALTNGVGEDVCDIA---------VGHVTNGEIREIVAD--GALVRMELRGKGKIFS 1064

Query: 1158 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1217
            T++ +    + L G        L  +  GQ ++C+V  I R+  G     L++R SL  M
Sbjct: 1065 TDISD----EFLDGM-------LKNFRVGQIIRCRV--IGRSNEGFV---LTMRKSL--M 1106

Query: 1218 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1277
                      D++   + +  I D+ P  I +G +K  +  G F+ LSR +  +V  +N 
Sbjct: 1107 HEI------CDLEPVDRDICDITDVKPKQIFRGIIKVCSESGIFVTLSRCVHGRVTFANA 1160

Query: 1278 SDGYVESPEKEFPI---GKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            S  Y+    +   I   G++V   V+SV P   RVE+++   D+
Sbjct: 1161 SKFYISDHTEAIKIFYPGRIVHCCVISVSPQDGRVELSMLERDT 1204



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 17/137 (12%)

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            ++EG  ++C+VL  S   R   H+ L+ + SL G    +   + T+ D           +
Sbjct: 51   FNEGNVIRCRVLTSSAKRR---HLHLTHKQSLVG----SKLPIVTNYDV----------I 93

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
              + ++ G++ N+   GCF+     +   V    LS   V++P+K F IG++V  RV+S 
Sbjct: 94   KRDDVIHGFISNIKPFGCFVKFYDDVTGFVPHHQLSATPVQNPQKLFFIGQVVKCRVISN 153

Query: 1303 EPLSKRVEVTLKTSDSR 1319
            +  +K+++++ +T + +
Sbjct: 154  DAGNKKLKLSFRTMNEK 170



 Score = 49.3 bits (116), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 167/395 (42%), Gaps = 61/395 (15%)

Query: 340  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP---- 395
            + L  G ++ S+ +   F   D+  G  V+G+V ++ +  AIV+       L  LP    
Sbjct: 828  KNLLLGKIQESSSDVGDFPFLDISVGSKVRGEVASIRATTAIVK-------LTSLPIVHG 880

Query: 396  -------HMSE-FEIVK----PGKKFKVGAELVFRVLGVKS----KRITVTHKK-TLVKS 438
                   H SE FE  K    P    KVG  +   V+GV+     + + +T++K T    
Sbjct: 881  HHQVGRIHASEVFEECKQNVSPMNNLKVGDTISCTVIGVRDVMTHRFLEITNRKATRGVI 940

Query: 439  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
            +L++  S     D++       +  +    V    GV+GF P+  L +D G         
Sbjct: 941  ELSLWRSVPPPGDKIDAEFPFDR-SRESYLVEVRPGVRGFIPKL-LAMDGGKMGQGKMKQ 998

Query: 499  GQVVKCRIM---SSIPASRRINLSFMMKPTRVSEDDL-VKLGSLVSGVVDVVTPNAVVVY 554
            G+ V+C ++     I  + R  L+       V ED   + +G + +G +  +  +  +V 
Sbjct: 999  GRCVECIVVKHGDPIMFACRGALT-----NGVGEDVCDIAVGHVTNGEIREIVADGALVR 1053

Query: 555  VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL---VLDNESSNLLLSAKYSL 611
            +  +G  KG I +  ++D       +  ++K  +   Q++   V+   +   +L+ + SL
Sbjct: 1054 MELRG--KGKIFSTDISDEF-----LDGMLK-NFRVGQIIRCRVIGRSNEGFVLTMRKSL 1105

Query: 612  INSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFL----GRLTGFAPRSKAV 661
            ++    L        D + + P  +  G +    E+G FV       GR+T FA  SK  
Sbjct: 1106 MHEICDLEPVDRDICDITDVKPKQIFRGIIKVCSESGIFVTLSRCVHGRVT-FANASKFY 1164

Query: 662  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
                 +  K +Y G+ V   ++ V+ + GR+ LS+
Sbjct: 1165 ISDHTEAIKIFYPGRIVHCCVISVSPQDGRVELSM 1199



 Score = 43.9 bits (102), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 929  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
            VG +   EI EI      ++  +   G+I  T+++D+    ++ +  NF++GQ +  R+I
Sbjct: 1034 VGHVTNGEIREIVADGALVRMELRGKGKIFSTDISDE---FLDGMLKNFRVGQIIRCRVI 1090

Query: 989  AKSNKP---DMKKSFLWELS-IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEW 1044
             +SN+     M+KS + E+  ++P    + +I         DV   Q   G +       
Sbjct: 1091 GRSNEGFVLTMRKSLMHEICDLEPVDRDICDI--------TDVKPKQIFRGIIKVCSESG 1142

Query: 1045 ALLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1103
              +T+SR +  ++ F   S +  S+  E  + F+ G+ V   V+S++ +   + L +   
Sbjct: 1143 IFVTLSRCVHGRVTFANASKFYISDHTEAIKIFYPGRIVHCCVISVSPQDGRVELSMLER 1202

Query: 1104 QDGISDKTVDISND 1117
              G      DI ND
Sbjct: 1203 DTG----HCDIIND 1212


>gi|255953027|ref|XP_002567266.1| Pc21g02010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588977|emb|CAP95098.1| Pc21g02010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1806

 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/329 (38%), Positives = 208/329 (63%), Gaps = 28/329 (8%)

Query: 1494 GHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSF 1553
              TD A+  D ++     KK+K+ R+ EI+      L+ + P++  +FERL+   P+SS 
Sbjct: 1479 AQTDAAERSDSED--EGSKKKKKNRKAEIQVDRTGDLDANGPQSVADFERLLLGEPDSSL 1536

Query: 1554 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613
            +W++YMAF L + ++EKAR+IAERAL+TI + ++ EKLNIWVA  N+EN YG+  ++++ 
Sbjct: 1537 LWLQYMAFQLELGEIEKARAIAERALRTITMGQDAEKLNIWVALLNMENTYGD--DDSLE 1594

Query: 1614 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLL 1671
            +VF+RA QY +P++++  ++ +Y ++ +N+ A +L Y  +KK     S K +      L 
Sbjct: 1595 EVFKRACQYNEPQEIYERMISIYIQSGKNQKASDLFYAALKKKISSQSPKFFYNYASFLF 1654

Query: 1672 KQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPK 1727
                  +  +A++ RAL SLP H H++  S+ A LEF+  NG  +RGR++FEG+LS +PK
Sbjct: 1655 DTMASPDRARALLPRALQSLPAHTHVETTSKFAQLEFRSANGDVERGRTVFEGLLSSFPK 1714

Query: 1728 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYL 1773
            R DLW++ LD EI++GD + +R LFER + L               + PK+ +FLFKK+L
Sbjct: 1715 RIDLWNVLLDLEIKVGDAEQVRRLFERVLGLQSSKKGPVTVDASKKVKPKQARFLFKKWL 1774

Query: 1774 EYEKSV----GEEERIEYVKQKAMEYVES 1798
             +E+ +    G+E+ +E VK +A+ YV+S
Sbjct: 1775 SFEEGLAAANGDEKMVEEVKARAVTYVKS 1803



 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 301/1271 (23%), Positives = 541/1271 (42%), Gaps = 165/1271 (12%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL----------- 48
            + G V+ +N  D+ + LP  L G   L   +  L+  L+  +    ++            
Sbjct: 165  ILGQVSSINAHDIGLSLPNNLTGYVPLTSVSKGLEDRLEKLLNDEGEDDDAEDSSDDESF 224

Query: 49   -LPTIFHVGQLVSCIVLQLD---DDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 104
             L   F++GQ +   V+      DD K   K++I LS+       G S   +     + A
Sbjct: 225  DLKDHFYLGQYLRAFVVSTGSNPDDPKAKSKKRIELSVDPRQTNTGFSKSDLVVNSAVQA 284

Query: 105  YVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKV 159
             V S+EDHG ++  G+      GF+  ++   +  +D   +K G +   +V   + +  V
Sbjct: 285  SVVSVEDHGVVMDLGIEGSELKGFM--SSKETDPSVDYSSIKEGSVFLCMVTGQNPSGNV 342

Query: 160  VYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 217
            + LSS+  T +     +      +I+  +PG      +  +  NG++   +     TVD+
Sbjct: 343  IKLSSNFQTSASIKKSNYLSSAPTINTFLPGTAAEVLLTEVTSNGMIGKIMGMLDATVDL 402

Query: 218  FHLQNTFPTTNWKND----YNQHKKVNARILFVDPTSRA--VGLTLNPYLL----HNRAP 267
                    + N K D    Y    K+  RI+   P +    VG ++  ++L      R P
Sbjct: 403  VQ-----SSINGKVDLEKKYKIGAKIKGRIISTFPAAEPLKVGFSMLDHVLKLSSEARGP 457

Query: 268  PSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK-- 322
             S      +  I  + KVV+VD+GLG+   I  T      +V +S +++ +V  +++   
Sbjct: 458  GSSDDAPAISAIIPEVKVVKVDQGLGVYARIGET--KHMGFVHMSRLSDGKVETIDESSG 515

Query: 323  -YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDS 377
             ++  +    R++G+  ++ L     + S  E       DV  G +VKGKV    I  + 
Sbjct: 516  AFQLDAVHEARVIGYNSIDNLYILSFEKSVIEQPFLRVEDVNVGAIVKGKVEKLLIGAEG 575

Query: 378  F-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 434
              G IV    G+  L P  H ++  +  P KKF+ G +L  R+L V  + ++I +T KK+
Sbjct: 576  MNGLIVNLADGITGLVPSMHFADTMLQFPEKKFREGQKLSLRILSVNLEKRQIRLTLKKS 635

Query: 435  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 494
            L+ S+ +I   Y + T    + G I  ++ HG  V+FY  V+GF P SE+      +P+ 
Sbjct: 636  LLNSESSIWKDYKDITPSAQSPGTIVSLQSHGAVVQFYGEVRGFLPVSEMSEAYIQDPAQ 695

Query: 495  MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPN 549
             + +GQVV    +S   +  R+ +S    P+  +E      + +  G LVSG V   + +
Sbjct: 696  HFRLGQVVNVHALSVDVSLGRLAVS-CKDPSTFTEKYREAFENLHPGHLVSGTVFEKSND 754

Query: 550  AVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--S 606
             V++ +   G     +  E L D      + M S ++ G + + LLVLD + ++ L+  S
Sbjct: 755  DVLLKLDESGLV-ARLDAEQLIDGSASKQSSMLSKLRVGQKLNDLLVLDIQRAHRLIKVS 813

Query: 607  AKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
            ++ SL  +A+Q  +P     +   S+V G+V NI   G FV FLG LTG  P+    D  
Sbjct: 814  SRASLKKAAKQKNIPGQFEEVQEGSLVTGFVRNITPDGVFVEFLGGLTGLLPKRLIED-- 871

Query: 665  RADLSKTYY---VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 721
             A+L + +Y     Q++  N+  V+ E  R  LS+K     ++ A+  +     +E IA 
Sbjct: 872  -ANLKQPHYGLTKAQTIVVNVQSVDQEFKRFILSMK--PVQASQAAPKKAAKQTDETIA- 927

Query: 722  LQSSKHNGSELKWVEGFIIGSVIEGK----------VHESNDFGVVVSFEEHSDVYGFIT 771
                      +K +  F  G V+E K          V  +++    +   E  D +  I 
Sbjct: 928  ----NPVDDNIKSMSDFTFGRVVECKVVSIKATQVNVQLADNIQGRIDVSEVFDDWKDIK 983

Query: 772  HHQLAGATVESGSVIQAAILDVAKAER--------------LVDLSLKTVFIDRFREANS 817
              +      ++  ++ A IL V  A                + +LSLK  +I     A  
Sbjct: 984  DRKQPLRFFKAKQILSARILGVHDARNHKFLPISHRTGKYPVFELSLKPSYIKAANPAPL 1043

Query: 818  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQK 875
            N +             + V  +    V  V ++ L ++L P     + +   S D +   
Sbjct: 1044 NME------------QVQVGSSWVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLT 1091

Query: 876  FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY---DVGSL 932
              +K F  G ++   V A+   +  G L L           S+K+   K ++    VG +
Sbjct: 1092 DMEKNFPIGSALKVQVTAV--DAEKGHLNL-----------SAKQGYDKLAFGDISVGMI 1138

Query: 933  VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 992
            +   +T++   +L ++ G    G +++T++ DD S     + +     + + A +IA   
Sbjct: 1139 LPGRVTKVTERQLIMQLGESLVGAVNLTDLADDYSKANPTVHNK---NEVLRACVIAVD- 1194

Query: 993  KPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1050
                K S    LS++PS +  S   +  + +    +V     + G+V +V +    + IS
Sbjct: 1195 ----KSSKKIALSLRPSKVMSSSLPVHDREISSLKEVKPNDIIRGFVRRVTDSGLFVAIS 1250

Query: 1051 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-----VLRP-FQ 1104
              + A + + D     S L+E++  F   + V G V  ++ E+  L+L     VL P F+
Sbjct: 1251 HDITAYVRVSD--LSDSYLKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFK 1308

Query: 1105 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1164
              I+ K            + EG IV G++ K+      +V+    ++ G  H +E+ +  
Sbjct: 1309 APITLKD-----------LKEGQIVTGKVRKVEEFGAFIVIDGSSNISGLCHRSEMADKR 1357

Query: 1165 VSDPLSGYDEG 1175
            V D    YDEG
Sbjct: 1358 VEDARKLYDEG 1368



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 184/419 (43%), Gaps = 53/419 (12%)

Query: 52   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 98
             F   Q++S  +L + D +           GK  ++ LSL+ S +       L++E VQ 
Sbjct: 991  FFKAKQILSARILGVHDARNHKFLPISHRTGKYPVFELSLKPSYIKAANPAPLNMEQVQV 1050

Query: 99   GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKPGLLLQGVVRS 152
            G     +V ++ D    ++   P+  G L   + +++  +      +   G  L+  V +
Sbjct: 1051 GSSWVGFVNNVADDCLWVNLS-PNVRGRLRFMDASDDLSLLTDMEKNFPIGSALKVQVTA 1109

Query: 153  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
            +D  +  + LS+      K    D   IS+ +++PG     RV  + E  +++       
Sbjct: 1110 VDAEKGHLNLSAK-QGYDKLAFGD---ISVGMILPG-----RVTKVTERQLIMQLGESLV 1160

Query: 213  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-- 270
            G V++  L + +   N    +N+++ + A ++ VD +S+ + L+L P  + + + P H  
Sbjct: 1161 GAVNLTDLADDYSKAN-PTVHNKNEVLRACVIAVDKSSKKIALSLRPSKVMSSSLPVHDR 1219

Query: 271  -------VKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 322
                   VK  DI  +  V RV D GL + +    T     AYV +SD+++  +++ +  
Sbjct: 1220 EISSLKEVKPNDII-RGFVRRVTDSGLFVAISHDIT-----AYVRVSDLSDSYLKEWKDS 1273

Query: 323  YKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFG 379
            ++    V+ ++      +G     LK S  +       T  D+K G +V GKV  V+ FG
Sbjct: 1274 FQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPITLKDLKEGQIVTGKVRKVEEFG 1333

Query: 380  AIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 434
            A +   G   +  LC    M++  +    K +  G  +  +++ +   SK+I+ + K +
Sbjct: 1334 AFIVIDGSSNISGLCHRSEMADKRVEDARKLYDEGDAVKAKIIKIDLDSKKISFSLKAS 1392


>gi|50554347|ref|XP_504582.1| YALI0E30217p [Yarrowia lipolytica]
 gi|49650451|emb|CAG80186.1| YALI0E30217p [Yarrowia lipolytica CLIB122]
          Length = 1567

 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/270 (41%), Positives = 178/270 (65%), Gaps = 5/270 (1%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L    P++  ++ERL+  +PNSS +WI YM+F++ ++++EKAR IA+RAL+TI+ R+E+E
Sbjct: 1284 LSTATPQSVGDYERLLVGNPNSSVLWISYMSFVMQLSELEKAREIAQRALKTISYRDEDE 1343

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLN+W+A  NLEN +G P  E+  K F+ A QY D + +++ +  +Y  +++   ADE+ 
Sbjct: 1344 KLNVWLALLNLENTFGTP--ESTDKTFKDAAQYMDAETIYMKMADIYAASDKKDKADEVY 1401

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
             K +KKF  S + W++    L   +Q    + ++ RA  +LP+  H++   + A LE+K+
Sbjct: 1402 AKAVKKFSGSMEAWIKYATFLFDNEQAAKGRVLLDRATKALPKRDHLQCAIKFAQLEYKS 1461

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAISL-SLPPKKMK 1766
            G A+RGR++ EG++S YPKRTDLWS ++D EI+ G D   I  LFER ++L  L  K+ K
Sbjct: 1462 GDAERGRTLLEGLVSVYPKRTDLWSQFVDFEIKYGQDKTKIEALFERVVALPKLSLKQAK 1521

Query: 1767 FLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            F FKK+ +YE    +++  EYVK KA +YV
Sbjct: 1522 FFFKKWYQYEVESDDDKAAEYVKAKAADYV 1551



 Score =  106 bits (265), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 167/726 (23%), Positives = 298/726 (41%), Gaps = 77/726 (10%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 62
           + G +  +     V+ LP  L G       +   L+ +IE  E+  L      GQ V   
Sbjct: 97  ILGRIVNIQSTACVVSLPNNLHGFVSCVQ-VSEALNAKIEEGEEFDLSDYVKEGQWVRAS 155

Query: 63  VLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 122
           V+  D   K +G     LSL    + + +    +   M L   VKS ED GY++  G+  
Sbjct: 156 VV--DTSNKRLG-----LSLLPKDVNRDIEDSDIDANMALQVEVKSKEDKGYVVATGIKG 208

Query: 123 FTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI 182
             GF+   ++  N G      ++L  V+R   RT     ++ D +   + V + L+  S 
Sbjct: 209 KKGFIKDTDVELNKG-----QIVLACVLRISGRT-----ITLDTEHTGEAV-RQLEDFS- 256

Query: 183 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 242
              V G  V+        NG ++S       T+D F  Q +F          +     AR
Sbjct: 257 -SAVAGTPVTVVTTDKRNNGAVVSVFGSVDATIDPF--QGSF-------GLEEKTSSVAR 306

Query: 243 ILFV---DPTSRAVGLTLNPYLLH-NRAPPSHVKVGDIYDQSKV--VRVDRGL--GLLLD 294
           ++       + + + L+  P++++   A P   ++G+ +   +V  V+V   +  GL ++
Sbjct: 307 VVATLDRGASGKRMLLSALPHVVNLEDADP---RIGEAFLPGQVLGVKVTHVVQHGLFVE 363

Query: 295 IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 354
           +     + P ++ IS +A+E+       Y+ G  +  RI+ F   + +     + S  + 
Sbjct: 364 LAE---NIPGFIHISKLADEKTDST-ADYEVGQTLDARIIAFAPQDEMYVLSCEQSVMDA 419

Query: 355 LVFTHSDVKPGMVVKGKVIA-VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 413
                SD+  G  V+G V   +   G IV     + A+ P  H+ + ++  P  KFK+G+
Sbjct: 420 KYIATSDLSAGDKVEGTVTRHLPKGGIIVALSSFITAVVPAAHLVDAKMANPELKFKIGS 479

Query: 414 ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA-EATDRLITHGWITKIEKHGCFVRFY 472
           ++  R+LGV S    +T KK+L         SYA E  D  I  G +  ++  GC V F+
Sbjct: 480 KIKGRLLGVDSSGCRMTIKKSLYNLPKDDFISYASEIGD--IGSGTVVNVKPGGCVVEFW 537

Query: 473 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 532
           +  Q + P  E+      + +    VGQ VK RI+   P  + + +S   K ++V+ + +
Sbjct: 538 DNSQAWLPAGEVSEAFIADITKHCRVGQTVKIRILDINPEKQSMQVS--CKLSKVAAEHV 595

Query: 533 ------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
                 + LG LV+G +     + V+   +      G +P   L    +   V   +   
Sbjct: 596 SGAYEGISLGDLVTGKIIDKRGDFVIEMTVGDVDLTGVVPRNLLPPSHKKLRVGDKL--- 652

Query: 587 GYEFDQLLVLDNES--SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
                + +VL  +   S++ L A   +I                  V G+V N+ + G F
Sbjct: 653 -----ECVVLAKQPWMSSMTLGAHPDIIKGYHNKTLIKETPSVGQTVTGWVQNVNQHGVF 707

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL--SLKQSCCS 702
           V F G + G AP++   D        +Y   Q V+  +  VN +   +++  SL     +
Sbjct: 708 VSFAG-VVGLAPQASLSD-------DSYDKFQVVKGRVTSVNGDKFAVSIGKSLNGPAVN 759

Query: 703 STDASF 708
             D S 
Sbjct: 760 PVDPSI 765



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 113/265 (42%), Gaps = 20/265 (7%)

Query: 459 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 518
           +T + +HG FV     + GF   S+L  D   + ++ Y VGQ +  RI++  P      L
Sbjct: 352 VTHVVQHGLFVELAENIPGFIHISKLA-DEKTDSTADYEVGQTLDARIIAFAPQDEMYVL 410

Query: 519 SF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
           S    +M    ++  DL   G  V G V    P   ++  ++  +    +P  HL D   
Sbjct: 411 SCEQSVMDAKYIATSDL-SAGDKVEGTVTRHLPKGGIIVALSS-FITAVVPAAHLVDAKM 468

Query: 576 HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSV 630
               +K   K G +    L L  +SS   ++ K SL N    LP D     AS I    +
Sbjct: 469 ANPELK--FKIGSKIKGRL-LGVDSSGCRMTIKKSLYN----LPKDDFISYASEI--GDI 519

Query: 631 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
             G V N+   GC V F      + P  +  +   AD++K   VGQ+V+  ILD+N E  
Sbjct: 520 GSGTVVNVKPGGCVVEFWDNSQAWLPAGEVSEAFIADITKHCRVGQTVKIRILDINPEKQ 579

Query: 691 RITLSLKQSCCSSTDASFMQEHFLL 715
            + +S K S  ++   S   E   L
Sbjct: 580 SMQVSCKLSKVAAEHVSGAYEGISL 604



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 38/282 (13%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            G ++G +++ ++    GL V++  ++ G +H ++L            DE + D  + Y+ 
Sbjct: 345  GQVLGVKVTHVVQH--GLFVELAENIPGFIHISKLA-----------DE-KTDSTADYEV 390

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ +  ++  I+   +   +V LS   S+       +SDLS          +K+E     
Sbjct: 391  GQTLDARI--IAFAPQDEMYV-LSCEQSVMDAKYIATSDLSAG--------DKVEGTVTR 439

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             + +G        G  + LS  + A V  ++L D  + +PE +F IG  + GR+L V+  
Sbjct: 440  HLPKG--------GIIVALSSFITAVVPAAHLVDAKMANPELKFKIGSKIKGRLLGVD-- 489

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
            S    +T+K S         I+  S   +GDI  G +  V+  G  +   + +   L   
Sbjct: 490  SSGCRMTIKKSLYNLPKDDFISYAS--EIGDIGSGTVVNVKPGGCVVEFWDNSQAWL-PA 546

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             E+SE  + +I    R G+ VK++IL ++ EK+ + +  K S
Sbjct: 547  GEVSEAFIADITKHCRVGQTVKIRILDINPEKQSMQVSCKLS 588



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 114/545 (20%), Positives = 225/545 (41%), Gaps = 121/545 (22%)

Query: 624  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGF--------APRSKAVDGQRADLSKTYYVG 675
            +I   S++ G + NI  T C V     L GF        A  +K  +G+  DLS     G
Sbjct: 90   NISVGSIILGRIVNIQSTACVVSLPNNLHGFVSCVQVSEALNAKIEEGEEFDLSDYVKEG 149

Query: 676  QSVRSNILDVNSETGRITLSL-KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 734
            Q VR++++D +++  R+ LSL  +      + S +  +  L+ ++     SK +      
Sbjct: 150  QWVRASVVDTSNK--RLGLSLLPKDVNRDIEDSDIDANMALQVEV----KSKED------ 197

Query: 735  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 794
             +G+++ + I+GK                    GFI    +    +  G ++ A +L + 
Sbjct: 198  -KGYVVATGIKGK-------------------KGFIKDTDV---ELNKGQIVLACVLRI- 233

Query: 795  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 854
                    S +T+ +D      + RQ +       +S   G   TV  +    + N  V+
Sbjct: 234  --------SGRTITLDTEHTGEAVRQLEDF-----SSAVAGTPVTV--VTTDKRNNGAVV 278

Query: 855  SLPEYNHSIGYASVSDYNTQKFPQKQFLNGQ-SVIATVMALPSSSTAGRLLLLLKAISET 913
            S+        + SV D     F     L  + S +A V+A      +G+ +LL  A+   
Sbjct: 279  SV--------FGSV-DATIDPFQGSFGLEEKTSSVARVVATLDRGASGKRMLL-SALPHV 328

Query: 914  ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 973
                    +   ++  G ++  ++T +    L ++      G IHI+++ D+K++     
Sbjct: 329  VNLEDADPRIGEAFLPGQVLGVKVTHVVQHGLFVELAENIPGFIHISKLADEKTDST--- 385

Query: 974  FSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1033
             +++++GQT+ ARIIA + + +M     + LS + S++    I +       D+S G +V
Sbjct: 386  -ADYEVGQTLDARIIAFAPQDEM-----YVLSCEQSVMDAKYIAT------SDLSAGDKV 433

Query: 1034 TGYVYKVDNEWALLTISRHL-KAQLFILDSAY----------EPSELQEFQRRFHIGKAV 1082
             G            T++RHL K  + +  S++            +++   + +F IG  +
Sbjct: 434  EG------------TVTRHLPKGGIIVALSSFITAVVPAAHLVDAKMANPELKFKIGSKI 481

Query: 1083 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE-GDIVGGRISKILSGVG 1141
             G +L ++      R+ ++           ++  D+  ++  E GDI  G +  +    G
Sbjct: 482  KGRLLGVDSSG--CRMTIKK-------SLYNLPKDDFISYASEIGDIGSGTVVNVKP--G 530

Query: 1142 GLVVQ 1146
            G VV+
Sbjct: 531  GCVVE 535



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 6/182 (3%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            E   P  ++   V +V   G F+ L+  +   + +S L+D   +S   ++ +G+ +  R+
Sbjct: 340  EAFLPGQVLGVKVTHVVQHGLFVELAENIPGFIHISKLADEKTDS-TADYEVGQTLDARI 398

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
            ++  P  +   ++ + S       ++    S+L  GD V G + R    G  I   ++ +
Sbjct: 399  IAFAPQDEMYVLSCEQS----VMDAKYIATSDLSAGDKVEGTVTRHLPKGGIIVALSSFI 454

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1419
              +   + L +  + N E  ++ G K+K ++L VD    R+++  KS Y     D +  +
Sbjct: 455  TAVVPAAHLVDAKMANPELKFKIGSKIKGRLLGVDSSGCRMTI-KKSLYNLPKDDFISYA 513

Query: 1420 SE 1421
            SE
Sbjct: 514  SE 515


>gi|317136747|ref|XP_001727253.2| rRNA biogenesis protein RRP5 [Aspergillus oryzae RIB40]
          Length = 1818

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 26/302 (8%)

Query: 1521 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAERAL+
Sbjct: 1515 EIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLRYMAFQLELGEVEKAREIAERALR 1574

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            TI I ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++V+  L+ +Y ++ 
Sbjct: 1575 TITIGQDAEKLNIWVAMLNLENTYGN--DDTIDEVFKRACQYNDTQEVYERLISIYIQSG 1632

Query: 1641 QNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKF 1697
            +N+ ADEL    + KK   S K +L     L       E  +A++ RAL SLP H H++ 
Sbjct: 1633 KNEKADELFQTALKKKISQSPKFFLNYASFLFDNMAAPERGRALLPRALQSLPSHTHVET 1692

Query: 1698 ISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1755
             S+ A LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER 
Sbjct: 1693 TSKFAQLEFRSEHGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKNGDAEQVRRLFERV 1752

Query: 1756 ISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYV 1796
            + +               L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV
Sbjct: 1753 LGIRDSKKGVASVEASKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYV 1812

Query: 1797 ES 1798
            +S
Sbjct: 1813 KS 1814



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 163/649 (25%), Positives = 293/649 (45%), Gaps = 47/649 (7%)

Query: 49  LPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
           L   F++GQ +   V+ + +   D     +++I L++       GL    + +   + A 
Sbjct: 220 LSDYFYLGQYLRAYVVSVGNNAADASSKSRKRIELTVDPRQANFGLLKSDLVDNTAVQAS 279

Query: 106 VKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYL 162
           V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V   +    V+ L
Sbjct: 280 VVSVEDHGLVMDLGIEGADIKGFMSKKEIDPKTDYSTIKEGSVFLCMVTGQNANGNVLKL 339

Query: 163 SSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
           S++  + S  + K        +I+  +PG      +  +  +G     +     TVD+  
Sbjct: 340 SANLQS-SGSIKKSHYLSTAPTINSFLPGTAAEILLTEVTSSGATGKIMGMLDTTVDLVQ 398

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL----HNRAPPSH--- 270
                   +  N Y    KV  R++   P S    VG +L  ++       + P S    
Sbjct: 399 SGGNSSPDDLANKYKIGAKVKGRLISTFPASDPYKVGFSLLDHVCKFTSETQGPGSSEDA 458

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY---KEGS 327
             +  I  ++KV++VD GLG+ + I ST      +V +S +A+ +V  +  +Y   +  S
Sbjct: 459 PAISAIVPEAKVIKVDPGLGVYVQIGST--KHVGFVHVSKLADGQVESISAEYGPFRTDS 516

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIV 382
               R++G+  L+ L     + S  +       DV  G VVKGK+    I      G IV
Sbjct: 517 THEGRVVGYSALDNLYLLSFERSVIDQPFLRIEDVTIGAVVKGKIEKLLIGPSGLDGLIV 576

Query: 383 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 440
               G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L+ S+ 
Sbjct: 577 ALADGITGLVPSMHFADTALQFPEKKFREGMTVSARILSVNPEKRQIRLTLKKSLLNSES 636

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI   Y        + G I  ++ HG  V+FY  V+GF P SE+      +PS  + +GQ
Sbjct: 637 AIWKDYDSIVAGAQSPGTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQ 696

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYV 555
           VV    +S   +  ++ +S    P+  +E      + +  G LV+G V   + + +++ +
Sbjct: 697 VVNVHALSVDSSLEKLAVS-CKDPSTFTETYKKAFESIHPGLLVTGTVFEKSSDDLLLKL 755

Query: 556 IAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYS 610
              G     +  +H+ D     + +T+ K  I+ G + ++LLVLD + +  L+  S + S
Sbjct: 756 DDYGLV-ARLNLDHVVDGSPSKQSSTLSK--IRVGQKLNELLVLDIQRTRRLIRVSGRAS 812

Query: 611 LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
           L  +A+Q  +P+    +   + V G+V NI  TG FV FLG + G  P+
Sbjct: 813 LKKAAKQGLIPASFEDVQEGAEVTGFVRNITMTGVFVEFLGGVIGLVPK 861



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 179/409 (43%), Gaps = 51/409 (12%)

Query: 52   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 98
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 993  FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1052

Query: 99   GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 152
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1053 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1111

Query: 153  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1112 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1162

Query: 213  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---- 268
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1163 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1221

Query: 269  -----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 323
                   VKV D+         D GL + L    T     AYV +SD+++  +++ +  +
Sbjct: 1222 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVT-----AYVRVSDLSDSYLKEWKDSF 1276

Query: 324  KEGSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFG 379
            +    V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FG
Sbjct: 1277 QVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFG 1335

Query: 380  AIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
            A +   G   +  LC    M+E  +      +  G  +  ++L +  K+
Sbjct: 1336 AFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKIDRKQ 1384



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 407  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 461
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1097 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1147

Query: 462  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1148 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1205

Query: 522  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 569
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1206 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1263

Query: 570  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 624
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1264 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1317

Query: 625  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1318 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1377

Query: 683  LDVNSETGRITLSLKQSCCSSTD 705
            L ++ + G+I+  LK S     D
Sbjct: 1378 LKIDRKQGKISFGLKASYFKDED 1400



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 157/363 (43%), Gaps = 34/363 (9%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSC 61
            W G +  + +  L + L   +RG  R  DA D + L  ++E +        F +G  +  
Sbjct: 1056 WLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH--------FPIGSALRV 1107

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 121
             V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + +   I+     
Sbjct: 1108 NVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVTERQVIMQL-TD 1159

Query: 122  SFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVT 174
            +  G +   +L ++      P +     +L+  V S+D+  K + LS  P  V  S    
Sbjct: 1160 TIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPV 1218

Query: 175  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
            +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L +++    WK+ + 
Sbjct: 1219 QDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSY-LKEWKDSFQ 1277

Query: 235  QHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLG 290
              + V  R+  VDP    + + L   +L  + +AP     +K G I    K+ +V+    
Sbjct: 1278 VDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-TGKIRKVEEFGA 1336

Query: 291  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
             ++   S  +S   +   S++AE  V      Y EG  V+ +IL     +G  +  LKAS
Sbjct: 1337 FIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRKQGKISFGLKAS 1394

Query: 351  AFE 353
             F+
Sbjct: 1395 YFK 1397


>gi|238488517|ref|XP_002375496.1| rRNA biogenesis protein RRP5, putative [Aspergillus flavus NRRL3357]
 gi|220697884|gb|EED54224.1| rRNA biogenesis protein RRP5, putative [Aspergillus flavus NRRL3357]
          Length = 1827

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 26/302 (8%)

Query: 1521 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAERAL+
Sbjct: 1524 EIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLRYMAFQLELGEVEKARDIAERALR 1583

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            TI I ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++V+  L+ +Y ++ 
Sbjct: 1584 TITIGQDAEKLNIWVAMLNLENTYGN--DDTIDEVFKRACQYNDTQEVYERLISIYIQSG 1641

Query: 1641 QNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKF 1697
            +N+ ADEL    + KK   S K +L     L       E  +A++ RAL SLP H H++ 
Sbjct: 1642 KNEKADELFQTALKKKISQSPKFFLNYASFLFDNMAAPERGRALLPRALQSLPSHTHVET 1701

Query: 1698 ISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1755
             S+ A LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER 
Sbjct: 1702 TSKFAQLEFRSEHGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKNGDAEQVRRLFERV 1761

Query: 1756 ISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYV 1796
            + +               L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV
Sbjct: 1762 LGIRDSKKGVASVEASKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYV 1821

Query: 1797 ES 1798
            +S
Sbjct: 1822 KS 1823



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 163/649 (25%), Positives = 293/649 (45%), Gaps = 47/649 (7%)

Query: 49  LPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
           L   F++GQ +   V+ + +   D     +++I L++       GL    + +   + A 
Sbjct: 229 LSDYFYLGQYLRAYVVSVGNNAADASSKSRKRIELTVDPRQANFGLLKSDLVDNTAVQAS 288

Query: 106 VKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYL 162
           V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V   +    V+ L
Sbjct: 289 VVSVEDHGLVMDLGIEGADIKGFMSKKEIDPKTDYSTIKEGSVFLCMVTGQNANGNVLKL 348

Query: 163 SSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
           S++  + S  + K        +I+  +PG      +  +  +G     +     TVD+  
Sbjct: 349 SANLQS-SGSIKKSHYLSTAPTINSFLPGTAAEILLTEVTSSGATGKIMGMLDTTVDLVQ 407

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL----HNRAPPSH--- 270
                   +  N Y    KV  R++   P S    VG +L  ++       + P S    
Sbjct: 408 SGGNSSPDDLANKYKIGAKVKGRLISTFPASDPYKVGFSLLDHVCKFTSETQGPGSSEDA 467

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY---KEGS 327
             +  I  ++KV++VD GLG+ + I ST      +V +S +A+ +V  +  +Y   +  S
Sbjct: 468 PAISAIVPEAKVIKVDPGLGVYVQIGST--KHVGFVHVSKLADGQVESISAEYGPFRTDS 525

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIV 382
               R++G+  L+ L     + S  +       DV  G VVKGK+    I      G IV
Sbjct: 526 THEGRVVGYSALDNLYLLSFERSVIDQPFLRIEDVTIGAVVKGKIEKLLIGPSGLDGLIV 585

Query: 383 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 440
               G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L+ S+ 
Sbjct: 586 ALADGITGLVPSMHFADTALQFPEKKFREGMTVSARILSVNPEKRQIRLTLKKSLLNSES 645

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI   Y        + G I  ++ HG  V+FY  V+GF P SE+      +PS  + +GQ
Sbjct: 646 AIWKDYDSIVAGAQSPGTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQ 705

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYV 555
           VV    +S   +  ++ +S    P+  +E      + +  G LV+G V   + + +++ +
Sbjct: 706 VVNVHALSVDSSLEKLAVS-CKDPSTFTETYKKAFESIHPGLLVTGTVFEKSSDDLLLKL 764

Query: 556 IAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYS 610
              G     +  +H+ D     + +T+ K  I+ G + ++LLVLD + +  L+  S + S
Sbjct: 765 DDYGLV-ARLNLDHVVDGSPSKQSSTLSK--IRVGQKLNELLVLDIQRTRRLIRVSGRAS 821

Query: 611 LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
           L  +A+Q  +P+    +   + V G+V NI  TG FV FLG + G  P+
Sbjct: 822 LKKAAKQGLIPASFEDVQEGAEVTGFVRNITMTGVFVEFLGGVIGLVPK 870



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 179/409 (43%), Gaps = 51/409 (12%)

Query: 52   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 98
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1002 FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1061

Query: 99   GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 152
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1062 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1120

Query: 153  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1121 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1171

Query: 213  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---- 268
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1172 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1230

Query: 269  -----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 323
                   VKV D+         D GL + L    T     AYV +SD+++  +++ +  +
Sbjct: 1231 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVT-----AYVRVSDLSDSYLKEWKDSF 1285

Query: 324  KEGSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFG 379
            +    V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FG
Sbjct: 1286 QVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFG 1344

Query: 380  AIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
            A +   G   +  LC    M+E  +      +  G  +  ++L +  K+
Sbjct: 1345 AFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKIDRKQ 1393



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 407  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 461
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1106 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1156

Query: 462  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1157 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1214

Query: 522  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 569
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1215 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1272

Query: 570  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 624
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1273 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1326

Query: 625  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1327 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1386

Query: 683  LDVNSETGRITLSLKQSCCSSTD 705
            L ++ + G+I+  LK S     D
Sbjct: 1387 LKIDRKQGKISFGLKASYFKDED 1409



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 157/363 (43%), Gaps = 34/363 (9%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSC 61
            W G +  + +  L + L   +RG  R  DA D + L  ++E +        F +G  +  
Sbjct: 1065 WLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH--------FPIGSALRV 1116

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 121
             V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + +   I+     
Sbjct: 1117 NVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVTERQVIMQL-TD 1168

Query: 122  SFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVT 174
            +  G +   +L ++      P +     +L+  V S+D+  K + LS  P  V  S    
Sbjct: 1169 TIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPV 1227

Query: 175  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
            +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L +++    WK+ + 
Sbjct: 1228 QDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSY-LKEWKDSFQ 1286

Query: 235  QHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLG 290
              + V  R+  VDP    + + L   +L  + +AP     +K G I    K+ +V+    
Sbjct: 1287 VDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-TGKIRKVEEFGA 1345

Query: 291  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
             ++   S  +S   +   S++AE  V      Y EG  V+ +IL     +G  +  LKAS
Sbjct: 1346 FIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRKQGKISFGLKAS 1403

Query: 351  AFE 353
             F+
Sbjct: 1404 YFK 1406


>gi|83770281|dbj|BAE60414.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1827

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 26/302 (8%)

Query: 1521 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAERAL+
Sbjct: 1524 EIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLRYMAFQLELGEVEKAREIAERALR 1583

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            TI I ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++V+  L+ +Y ++ 
Sbjct: 1584 TITIGQDAEKLNIWVAMLNLENTYGN--DDTIDEVFKRACQYNDTQEVYERLISIYIQSG 1641

Query: 1641 QNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKF 1697
            +N+ ADEL    + KK   S K +L     L       E  +A++ RAL SLP H H++ 
Sbjct: 1642 KNEKADELFQTALKKKISQSPKFFLNYASFLFDNMAAPERGRALLPRALQSLPSHTHVET 1701

Query: 1698 ISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1755
             S+ A LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER 
Sbjct: 1702 TSKFAQLEFRSEHGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKNGDAEQVRRLFERV 1761

Query: 1756 ISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYV 1796
            + +               L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV
Sbjct: 1762 LGIRDSKKGVASVEASKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYV 1821

Query: 1797 ES 1798
            +S
Sbjct: 1822 KS 1823



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 163/649 (25%), Positives = 293/649 (45%), Gaps = 47/649 (7%)

Query: 49  LPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
           L   F++GQ +   V+ + +   D     +++I L++       GL    + +   + A 
Sbjct: 229 LSDYFYLGQYLRAYVVSVGNNAADASSKSRKRIELTVDPRQANFGLLKSDLVDNTAVQAS 288

Query: 106 VKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYL 162
           V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V   +    V+ L
Sbjct: 289 VVSVEDHGLVMDLGIEGADIKGFMSKKEIDPKTDYSTIKEGSVFLCMVTGQNANGNVLKL 348

Query: 163 SSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
           S++  + S  + K        +I+  +PG      +  +  +G     +     TVD+  
Sbjct: 349 SANLQS-SGSIKKSHYLSTAPTINSFLPGTAAEILLTEVTSSGATGKIMGMLDTTVDLVQ 407

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL----HNRAPPSH--- 270
                   +  N Y    KV  R++   P S    VG +L  ++       + P S    
Sbjct: 408 SGGNSSPDDLANKYKIGAKVKGRLISTFPASDPYKVGFSLLDHVCKFTSETQGPGSSEDA 467

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY---KEGS 327
             +  I  ++KV++VD GLG+ + I ST      +V +S +A+ +V  +  +Y   +  S
Sbjct: 468 PAISAIVPEAKVIKVDPGLGVYVQIGST--KHVGFVHVSKLADGQVESISAEYGPFRTDS 525

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIV 382
               R++G+  L+ L     + S  +       DV  G VVKGK+    I      G IV
Sbjct: 526 THEGRVVGYSALDNLYLLSFERSVIDQPFLRIEDVTIGAVVKGKIEKLLIGPSGLDGLIV 585

Query: 383 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 440
               G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L+ S+ 
Sbjct: 586 ALADGITGLVPSMHFADTALQFPEKKFREGMTVSARILSVNPEKRQIRLTLKKSLLNSES 645

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI   Y        + G I  ++ HG  V+FY  V+GF P SE+      +PS  + +GQ
Sbjct: 646 AIWKDYDSIVAGAQSPGTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQ 705

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYV 555
           VV    +S   +  ++ +S    P+  +E      + +  G LV+G V   + + +++ +
Sbjct: 706 VVNVHALSVDSSLEKLAVS-CKDPSTFTETYKKAFESIHPGLLVTGTVFEKSSDDLLLKL 764

Query: 556 IAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYS 610
              G     +  +H+ D     + +T+ K  I+ G + ++LLVLD + +  L+  S + S
Sbjct: 765 DDYGLV-ARLNLDHVVDGSPSKQSSTLSK--IRVGQKLNELLVLDIQRTRRLIRVSGRAS 821

Query: 611 LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
           L  +A+Q  +P+    +   + V G+V NI  TG FV FLG + G  P+
Sbjct: 822 LKKAAKQGLIPASFEDVQEGAEVTGFVRNITMTGVFVEFLGGVIGLVPK 870



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 179/409 (43%), Gaps = 51/409 (12%)

Query: 52   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 98
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1002 FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1061

Query: 99   GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 152
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1062 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1120

Query: 153  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1121 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1171

Query: 213  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---- 268
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1172 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1230

Query: 269  -----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 323
                   VKV D+         D GL + L    T     AYV +SD+++  +++ +  +
Sbjct: 1231 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVT-----AYVRVSDLSDSYLKEWKDSF 1285

Query: 324  KEGSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFG 379
            +    V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FG
Sbjct: 1286 QVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFG 1344

Query: 380  AIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
            A +   G   +  LC    M+E  +      +  G  +  ++L +  K+
Sbjct: 1345 AFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKIDRKQ 1393



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 407  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 461
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1106 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1156

Query: 462  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1157 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1214

Query: 522  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 569
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1215 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1272

Query: 570  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 624
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1273 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1326

Query: 625  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1327 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1386

Query: 683  LDVNSETGRITLSLKQSCCSSTD 705
            L ++ + G+I+  LK S     D
Sbjct: 1387 LKIDRKQGKISFGLKASYFKDED 1409



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 157/363 (43%), Gaps = 34/363 (9%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSC 61
            W G +  + +  L + L   +RG  R  DA D + L  ++E +        F +G  +  
Sbjct: 1065 WLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH--------FPIGSALRV 1116

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 121
             V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + +   I+     
Sbjct: 1117 NVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVTERQVIMQL-TD 1168

Query: 122  SFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVT 174
            +  G +   +L ++      P +     +L+  V S+D+  K + LS  P  V  S    
Sbjct: 1169 TIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPV 1227

Query: 175  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
            +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L +++    WK+ + 
Sbjct: 1228 QDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSY-LKEWKDSFQ 1286

Query: 235  QHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLG 290
              + V  R+  VDP    + + L   +L  + +AP     +K G I    K+ +V+    
Sbjct: 1287 VDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-TGKIRKVEEFGA 1345

Query: 291  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
             ++   S  +S   +   S++AE  V      Y EG  V+ +IL     +G  +  LKAS
Sbjct: 1346 FIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRKQGKISFGLKAS 1403

Query: 351  AFE 353
             F+
Sbjct: 1404 YFK 1406


>gi|238882053|gb|EEQ45691.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1726

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/280 (41%), Positives = 178/280 (63%), Gaps = 13/280 (4%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1447 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQE 1506

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLNIW+A  NLEN +G   +E++   F++++QY D   +H  L+ +Y+ +E+   A +L 
Sbjct: 1507 KLNIWIALLNLENTFG--TDESLEDTFKKSIQYMDSFTMHEKLVNIYKMSEKFDQAKQLF 1564

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
             +M KKF      W+     LL Q  Q+ +  ++ +AL  LP+ +HI+ + + A LEF+ 
Sbjct: 1565 NRMTKKFGKVLNTWVLYGSFLLDQNSQDEMHEILAKALNILPKREHIELVKKFAQLEFQK 1624

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDL---IRGLFERAISL 1758
            G  ++GRS+FEG++++ PKR DLW++Y+DQEI+         D D+   +  LFER +S 
Sbjct: 1625 GDPEQGRSLFEGLVADAPKRIDLWNVYIDQEIKQDNKTSDEDDTDIKSKVEDLFERVLSK 1684

Query: 1759 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             +  K+ KF F K+L YE+   +E  I  VK KA EYV++
Sbjct: 1685 KITRKQAKFFFNKWLNYEEDKQDENMIARVKSKAAEYVQN 1724



 Score =  194 bits (493), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 185/680 (27%), Positives = 318/680 (46%), Gaps = 40/680 (5%)

Query: 52  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 111
           IF +G  +   +    +D K   K++I L++    + + L ++ +    +L   VKSIED
Sbjct: 184 IFKLGSWLKAKITTSHEDYK--NKKRIELTIEPESVNENLEVDDLIVNNILQCSVKSIED 241

Query: 112 HGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSDPDT 168
           HG IL  G   ++GF+    L  N+ IDV    PGL++   + S    R  + L     T
Sbjct: 242 HGIILDTGKQEYSGFISNKELT-NAQIDVNTIVPGLVILCSIASKPSGR-TINLKPTTAT 299

Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
           VS   T      SID + PG++V   +  + ENG++        GT+ +  +QN F    
Sbjct: 300 VSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FELKE 358

Query: 229 WKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIYDQS 280
            K+ Y     V AR+L V     ++ + L++ P++L      S  +      +G ++DQ 
Sbjct: 359 LKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQTEALEAFPIGHVFDQV 418

Query: 281 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 340
           KV+  D+       +  +  S+  +  I     ++ + L   Y  GS  + R++GF  ++
Sbjct: 419 KVIGNDKHY-----VYVSFGSSSLFGQIHQSKFDDNKSL-LDYSIGSTHKSRVIGFNEVD 472

Query: 341 GLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHM 397
            L     ++   +       DV  G ++   +++ V  D  G  V+F    K   P   M
Sbjct: 473 NLLILTFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGIGINVKFFDEFKGFVPGNQM 532

Query: 398 SEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITH 456
           S+ ++V P +KF+VG +   R+L    KR  VT +K LV      ILS   +A     T+
Sbjct: 533 SDIKLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGFKTN 592

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
             + K   +GC V F+  ++ F P++E+      + SS   +GQ+VK RI+      +R+
Sbjct: 593 AIVEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDINKEQKRL 652

Query: 517 NLSFMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHL 570
            ++ + + + +S     ++  LVSG  +V  V    T ++V+V  +   + +G I    L
Sbjct: 653 VVT-LKQSSELSNAQKNEISKLVSGKSIVKTVVVEKTKDSVLVE-LEGSHLRGVIYDGQL 710

Query: 571 AD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINS--AQQLPSDASHI 625
           +D + E    +   +  G E  ++L+LD +  +  ++ +AK SLI++  ++  P + S I
Sbjct: 711 SDGNYEQNRALAKRLAIG-ETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEFSDI 769

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
             N VV GYV ++   G FV F GRLTG             DLSK ++  QS+   +L V
Sbjct: 770 AVNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCRVLSV 829

Query: 686 NSETGRITLSLKQSCCSSTD 705
           + E  R  L+L  S   + D
Sbjct: 830 DKENERFLLTLNNSSSFTKD 849



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 360  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
            SD+  G V+KG V  + + G  V     + AL  +  +S+  +      FK    ++ ++
Sbjct: 1147 SDLTRGQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKI 1206

Query: 420  LGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQ 476
            +  K + RI +T K++ V  +L I+ ++ +     I  G +T     G FV+      V 
Sbjct: 1207 VNCKQEGRILMTLKESEVNGELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVS 1266

Query: 477  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
            G    SE+  +      S++  G  VK +I+  I + +R  LS  MK +
Sbjct: 1267 GLCHHSEISENDVDNVKSLFGTGDRVKVKIL-KIDSEKR-QLSLGMKAS 1313


>gi|68466849|ref|XP_722620.1| hypothetical protein CaO19.1578 [Candida albicans SC5314]
 gi|68467128|ref|XP_722479.1| hypothetical protein CaO19.9151 [Candida albicans SC5314]
 gi|46444457|gb|EAL03732.1| hypothetical protein CaO19.9151 [Candida albicans SC5314]
 gi|46444607|gb|EAL03881.1| hypothetical protein CaO19.1578 [Candida albicans SC5314]
          Length = 1722

 Score =  231 bits (588), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/280 (41%), Positives = 178/280 (63%), Gaps = 13/280 (4%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1443 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQE 1502

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLNIW+A  NLEN +G   +E++   F++++QY D   +H  L+ +Y+ +E+   A +L 
Sbjct: 1503 KLNIWIALLNLENTFG--TDESLEDTFKKSIQYMDSFTMHEKLVNIYKMSEKFDQAKQLF 1560

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
             +M KKF      W+     LL Q  Q+ +  ++ +AL  LP+ +HI+ + + A LEF+ 
Sbjct: 1561 NRMTKKFGKVLNTWVLYGSFLLDQNSQDEMHEILAKALNILPKREHIELVKKFAQLEFQK 1620

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDL---IRGLFERAISL 1758
            G  ++GRS+FEG++++ PKR DLW++Y+DQEI+         D D+   +  LFER +S 
Sbjct: 1621 GDPEQGRSLFEGLVADAPKRIDLWNVYIDQEIKQDNKTSDEDDTDIKSKVEDLFERVLSK 1680

Query: 1759 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             +  K+ KF F K+L YE+   +E  I  VK KA EYV++
Sbjct: 1681 KITRKQAKFFFNKWLNYEEDKQDENMIARVKSKAAEYVQN 1720



 Score =  194 bits (493), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 185/680 (27%), Positives = 318/680 (46%), Gaps = 40/680 (5%)

Query: 52  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 111
           IF +G  +   +    +D K   K++I L++    + + L ++ +    +L   VKSIED
Sbjct: 180 IFKLGSWLKAKITTSHEDYK--NKKRIELTIEPESVNENLEVDDLIVNNILQCSVKSIED 237

Query: 112 HGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSDPDT 168
           HG IL  G   ++GF+    L  N+ IDV    PGL++   + S    R  + L     T
Sbjct: 238 HGIILDTGKQEYSGFISNKELT-NAQIDVNTIVPGLVILCSIASKPSGR-TINLKPTTAT 295

Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
           VS   T      SID + PG++V   +  + ENG++        GT+ +  +QN F    
Sbjct: 296 VSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FELKE 354

Query: 229 WKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIYDQS 280
            K+ Y     V AR+L V     ++ + L++ P++L      S  +      +G ++DQ 
Sbjct: 355 LKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQTEALEAFPIGHVFDQV 414

Query: 281 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 340
           KV+  D+       +  +  S+  +  I     ++ + L   Y  GS  + R++GF  ++
Sbjct: 415 KVIGNDKHY-----VYVSFGSSSLFGQIHQSKFDDNKSL-LDYSIGSTHKSRVIGFNEVD 468

Query: 341 GLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHM 397
            L     ++   +       DV  G ++   +++ V  D  G  V+F    K   P   M
Sbjct: 469 NLLILTFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGVGINVKFFDEFKGFVPGNQM 528

Query: 398 SEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITH 456
           S+ ++V P +KF+VG +   R+L    KR  VT +K LV      ILS   +A     T+
Sbjct: 529 SDIKLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGFKTN 588

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
             + K   +GC V F+  ++ F P++E+      + SS   +GQ+VK RI+      +R+
Sbjct: 589 AIVEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNKEQKRL 648

Query: 517 NLSFMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHL 570
            ++ + + + +S     ++  LVSG  +V  V    T ++V+V  +   + +G I    L
Sbjct: 649 VVT-LKQSSELSNAQKNEISKLVSGKSIVKTVVVEKTKDSVLVE-LEGSHLRGVIYDGQL 706

Query: 571 AD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINS--AQQLPSDASHI 625
           +D + E    +   +  G E  ++L+LD +  +  ++ +AK SLI++  ++  P + S I
Sbjct: 707 SDGNYEQNRALAKRLAIG-ETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEFSDI 765

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
             N VV GYV ++   G FV F GRLTG             DLSK ++  QS+   +L V
Sbjct: 766 AVNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCRVLSV 825

Query: 686 NSETGRITLSLKQSCCSSTD 705
           + E  R  L+L  S   + D
Sbjct: 826 DKENERFLLTLNNSSSFTKD 845



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 360  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
            SD+  G V+KG V  + + G  V     + AL  +  +S+  +      FK    ++ ++
Sbjct: 1143 SDLTRGQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKI 1202

Query: 420  LGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQ 476
            +  K + RI +T K++ V  +L I+ ++ +     I  G +T     G FV+      V 
Sbjct: 1203 VNCKQEGRILMTLKESEVNGELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVS 1262

Query: 477  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
            G    SE+  +      S++  G  VK +I+  I + +R  LS  MK +
Sbjct: 1263 GLCHHSEISENDVDNVKSLFGTGDRVKVKIL-KIDSEKR-QLSLGMKAS 1309


>gi|391866697|gb|EIT75965.1| rRNA processing protein [Aspergillus oryzae 3.042]
          Length = 1827

 Score =  231 bits (588), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 26/302 (8%)

Query: 1521 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAERAL+
Sbjct: 1524 EIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLRYMAFQLELGEVEKAREIAERALR 1583

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            TI I ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++V+  L+ +Y ++ 
Sbjct: 1584 TITIGQDAEKLNIWVAMLNLENTYGN--DDTIDEVFKRACQYNDTQEVYERLISIYIQSG 1641

Query: 1641 QNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKF 1697
            +N+ ADEL    + KK   S K +L     L       E  +A++ RAL SLP H H++ 
Sbjct: 1642 KNEKADELFQTALKKKISQSPKFFLNYASFLFDNMAAPERGRALLPRALQSLPSHTHVET 1701

Query: 1698 ISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1755
             S+ A LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER 
Sbjct: 1702 TSKFAQLEFRSEHGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKNGDAEQVRRLFERV 1761

Query: 1756 ISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYV 1796
            + +               L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV
Sbjct: 1762 LGIRDSKKGVASVEASKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYV 1821

Query: 1797 ES 1798
            +S
Sbjct: 1822 KS 1823



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 163/649 (25%), Positives = 293/649 (45%), Gaps = 47/649 (7%)

Query: 49  LPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
           L   F++GQ +   V+ + +   D     +++I L++       GL    + +   + A 
Sbjct: 229 LSDYFYLGQYLRAYVVSVGNNAADASSKSRKRIELTVDPRQANFGLLKSDLVDNTAVQAS 288

Query: 106 VKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYL 162
           V S+EDHG ++  G+      GF+ +  +   +    +K G +   +V   +    V+ L
Sbjct: 289 VVSVEDHGLVMDLGIEGADIKGFMSKKEIDPKTDYSTIKEGSVFLCMVTGQNANGNVLKL 348

Query: 163 SSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
           S++  + S  + K        +I+  +PG      +  +  +G     +     TVD+  
Sbjct: 349 SANLQS-SGSIKKSHYLSTAPTINSFLPGTAAEIFLTEVTSSGATGKIMGMLDTTVDLVQ 407

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL----HNRAPPSH--- 270
                   +  N Y    KV  R++   P S    VG +L  ++       + P S    
Sbjct: 408 SGGNSSPDDLANKYKIGAKVKGRLISTFPASDPYKVGFSLLDHVCKFTSETQGPGSSEDA 467

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY---KEGS 327
             +  I  ++KV++VD GLG+ + I ST      +V +S +A+ +V  +  +Y   +  S
Sbjct: 468 PAISAIVPEAKVIKVDPGLGVYVQIGST--KHVGFVHVSKLADGQVESISAEYGPFRTDS 525

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIV 382
               R++G+  L+ L     + S  +       DV  G VVKGK+    I      G IV
Sbjct: 526 THEGRVVGYSALDNLYLLSFERSVIDQPFLRIEDVTIGAVVKGKIEKLLIGPSGLDGLIV 585

Query: 383 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 440
               G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L+ S+ 
Sbjct: 586 ALADGITGLVPSMHFADTALQFPEKKFREGMTVSARILSVNPEKRQIRLTLKKSLLNSES 645

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI   Y        + G I  ++ HG  V+FY  V+GF P SE+      +PS  + +GQ
Sbjct: 646 AIWKDYDSIVAGAQSPGTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQ 705

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYV 555
           VV    +S   +  ++ +S    P+  +E      + +  G LV+G V   + + +++ +
Sbjct: 706 VVNVHALSVDSSLEKLAVS-CKDPSTFTETYKKAFESIHPGLLVTGTVFEKSSDDLLLKL 764

Query: 556 IAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYS 610
              G     +  +H+ D     + +T+ K  I+ G + ++LLVLD + +  L+  S + S
Sbjct: 765 DDYGLV-ARLNLDHVVDGSPSKQSSTLSK--IRVGQKLNELLVLDIQRTRRLIRVSGRAS 821

Query: 611 LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
           L  +A+Q  +P+    +   + V G+V NI  TG FV FLG + G  P+
Sbjct: 822 LKKAAKQGLIPASFEDVQEGAEVTGFVRNITMTGVFVEFLGGVIGLVPK 870



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 179/409 (43%), Gaps = 51/409 (12%)

Query: 52   IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 98
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1002 FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1061

Query: 99   GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 152
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1062 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1120

Query: 153  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1121 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1171

Query: 213  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---- 268
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1172 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1230

Query: 269  -----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 323
                   VKV D+         D GL + L    T     AYV +SD+++  +++ +  +
Sbjct: 1231 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVT-----AYVRVSDLSDSYLKEWKDSF 1285

Query: 324  KEGSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFG 379
            +    V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FG
Sbjct: 1286 QVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFG 1344

Query: 380  AIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
            A +   G   +  LC    M+E  +      +  G  +  ++L +  K+
Sbjct: 1345 AFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKILKIDRKQ 1393



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 407  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 461
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1106 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1156

Query: 462  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1157 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1214

Query: 522  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 569
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1215 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1272

Query: 570  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 624
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1273 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1326

Query: 625  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1327 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1386

Query: 683  LDVNSETGRITLSLKQSCCSSTD 705
            L ++ + G+I+  LK S     D
Sbjct: 1387 LKIDRKQGKISFGLKASYFKDED 1409



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 157/363 (43%), Gaps = 34/363 (9%)

Query: 4    W-GVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSC 61
            W G +  + +  L + L   +RG  R  DA D + L  ++E +        F +G  +  
Sbjct: 1065 WLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH--------FPIGSALRV 1116

Query: 62   IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 121
             V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + +   I+     
Sbjct: 1117 NVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVTERQVIMQL-TD 1168

Query: 122  SFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVT 174
            +  G +   +L ++      P +     +L+  V S+D+  K + LS  P  V  S    
Sbjct: 1169 TIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPV 1227

Query: 175  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
            +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L +++    WK+ + 
Sbjct: 1228 QDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDSY-LKEWKDSFQ 1286

Query: 235  QHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLG 290
              + V  R+  VDP    + + L   +L  + +AP     +K G I    K+ +V+    
Sbjct: 1287 VDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-TGKIRKVEEFGA 1345

Query: 291  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
             ++   S  +S   +   S++AE  V      Y EG  V+ +IL     +G  +  LKAS
Sbjct: 1346 FIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRKQGKISFGLKAS 1403

Query: 351  AFE 353
             F+
Sbjct: 1404 YFK 1406


>gi|443896583|dbj|GAC73927.1| rRNA processing protein Rrp5 [Pseudozyma antarctica T-34]
          Length = 1563

 Score =  231 bits (588), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/279 (43%), Positives = 179/279 (64%), Gaps = 7/279 (2%)

Query: 1524 AAEERL---LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            A EE L   L   AP +  +FERL+  SPNSSF+WI++M+F L ++DV+KAR IA RAL+
Sbjct: 1271 ALEEDLTADLATKAPESSSDFERLLLGSPNSSFLWIQFMSFALQLSDVDKAREIARRALK 1330

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
             IN REE E++N+W+A  NLEN YG+  +E +   F+ A+Q  D   ++L ++ + E  +
Sbjct: 1331 VINYREEQERMNVWIALLNLENTYGS--DETLEATFKEAVQANDGFTMYLKMVNILEAAD 1388

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1699
            +N  A+E+  K   K+  +   W+   + LL+  Q +  +A++ RA+ +L +  H   I+
Sbjct: 1389 KNDAAEEMFVKAKAKYSTTPDFWIEYARYLLRTGQADAARALLPRAMQALDKRDHTSTIT 1448

Query: 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD-VDLIRGLFERAISL 1758
            + AI EFK G A+RGR++FEG++  YPKR DLW  YLDQE RL D  + +R LFER ++L
Sbjct: 1449 RFAINEFKLGDAERGRTIFEGLVDSYPKRLDLWWQYLDQESRLDDNQNQVRNLFERTLTL 1508

Query: 1759 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
             L  KK K L KK+LEYEK+ G+ +    V  KA ++V+
Sbjct: 1509 KLTAKKGKSLLKKWLEYEKAHGDAKSQNAVLAKAKQFVD 1547



 Score =  143 bits (361), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 150/560 (26%), Positives = 252/560 (45%), Gaps = 53/560 (9%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSLETV 96
           L  +FHVGQ +   V+Q+       G+            R++ LSL   L+  G+S+  +
Sbjct: 239 LRDLFHVGQWLVASVVQVRGGDVARGRPTREGGEYEKESRRVELSLAPQLVNAGVSVSDL 298

Query: 97  QEGMVLTAYVKSIEDHGYILHFGLPSFTGF--------LPRNNLAENSGIDVKPGLLLQG 148
             G  L+A + S+EDHGYIL  G+  F GF        LP N  A  +G  ++ G ++  
Sbjct: 299 DAGATLSATISSVEDHGYILDSGIGEFRGFVSFAEAAKLPENFHAGKNGKSLQVGSVVFA 358

Query: 149 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 208
            +  +   ++    + DP  VS    K +   SI  ++PG +    V + L  G+ +   
Sbjct: 359 KITKVPENKRSFEATLDPKAVSTTPIKHVP--SITAVLPGTLTKVLVTAALPTGLNVKLF 416

Query: 209 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 255
             F  T+D FHL       +  + Y +  K  AR+L+  + P S           R  GL
Sbjct: 417 GMFDATIDRFHLPELPEGKDIPDVYKEGSKHVARVLWDLLSPPSAALQGENPEHERKFGL 476

Query: 256 TLNPYLLHNRAPPS-------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 308
           +L P +L  +AP +       H        +  VV+     GL++ +  T +    +V I
Sbjct: 477 SLAPQVLSLQAPVAKDQQLLQHAYPIGTPIKVTVVQTVTDWGLIVSVKGTDLR--GFVHI 534

Query: 309 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 365
           S V+++ V  L      + +G+  + R++G    +      LKAS  E      S+V+ G
Sbjct: 535 SQVSDDHVVALPPSSGPFCKGTEHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVG 594

Query: 366 MVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
            VV   +I +    AI +Q  G V  +    H ++ ++ +P K+FK G ++  RVL V  
Sbjct: 595 EVVNATIIKLGLPNAIFLQLQGHVDGVVFANHFADVKLTQPEKRFKPGLQVKARVLDVDP 654

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
              RI +T KK+LVKS L I+ S  +A   ++TH  + +++ +   V  + G++   P  
Sbjct: 655 SRNRIVLTCKKSLVKSDLPIVGSMQDARVGVVTHATVFRVQVNSIIVNLFGGLKALIPGR 714

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE--DDLVKLGSLV 539
           E       +  S +  G+VVK RI      ++R+  S     P  +++   D V++G  V
Sbjct: 715 EASEASFEDVKSSFTEGKVVKMRITEVDYENQRLVGSIKQASPEFLAKLNVDAVEVGEKV 774

Query: 540 SGVVDVVTPNAVVVYVIAKG 559
            G V  V    VV+ ++  G
Sbjct: 775 VGKVAAVHKEVVVLSLVPSG 794



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 141/664 (21%), Positives = 249/664 (37%), Gaps = 77/664 (11%)

Query: 193  TRVQSILENGVMLSFL-TYFTGTVDIFHLQNTF-----PTTNWKNDYNQHKKVNARILFV 246
            T VQ++ + G+++S   T   G V I  + +       P++       +HK   AR++  
Sbjct: 509  TVVQTVTDWGLIVSVKGTDLRGFVHISQVSDDHVVALPPSSGPFCKGTEHK---ARVVGH 565

Query: 247  DPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYV 306
             PT R + L+L   +L  +              + ++++     + L +          V
Sbjct: 566  SPTDRTLQLSLKASVLERKFMRVSEVEVGEVVNATIIKLGLPNAIFLQLQG---HVDGVV 622

Query: 307  TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVK 363
              +  A+ ++ + EK++K G  V+ R+L             K S  +    +V +  D +
Sbjct: 623  FANHFADVKLTQPEKRFKPGLQVKARVLDVDPSRNRIVLTCKKSLVKSDLPIVGSMQDAR 682

Query: 364  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE--FEIVKPGKKFKVGAELVFRVLG 421
             G+V    V  V     IV   GG+KAL P    SE  FE VK    F  G  +  R+  
Sbjct: 683  VGVVTHATVFRVQVNSIIVNLFGGLKALIPGREASEASFEDVK--SSFTEGKVVKMRITE 740

Query: 422  V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY-NGVQGF 478
            V  +++R+  + K+   +    +     E  ++++  G +  + K    +    +GV+  
Sbjct: 741  VDYENQRLVGSIKQASPEFLAKLNVDAVEVGEKVV--GKVAAVHKEVVVLSLVPSGVRAL 798

Query: 479  APRSELGLDPGCEPSSMYHV-------------------GQVVKCRIMSSIPASRRINLS 519
               S L    G     +                      G V+    + S   +R  N S
Sbjct: 799  LSLSVLAAMRGTSAEELLESLEEDQEIDNLVVSVKNPEKGLVIVADKVRSSKTARDANGS 858

Query: 520  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 579
                   VS    V+ G++V G V       +   V     ++ T+    LAD       
Sbjct: 859  -------VSTSAQVEQGAVVKGRVIQKNEKYLDCVVALGTATRATLHITDLADDFASGVS 911

Query: 580  MKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHG 633
            + S   PG   D  +V L     + ++S + S I+ +    +D      + +     V G
Sbjct: 912  LPS---PGDNVDCFVVSLKANGKSGVVSTRASRISPSNAEVTDVEITAITELAKGQKVRG 968

Query: 634  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            +V  I   G FV    +L       +  D    D  K + VGQ V   I+DVN+    I 
Sbjct: 969  FVKAITNVGVFVSLGRKLDARVQVRELFDEFVRDWKKRFTVGQVVSGTIMDVNANQNEIE 1028

Query: 694  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 753
            +SLK     ST  S        +E+     +        K +  F  G  ++G +    D
Sbjct: 1029 MSLK-----STPGSIKPRAERAQER-----AEADGKKRPKRLTDFKAGDKVKGFIKNIID 1078

Query: 754  FGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKT 806
            FGV V   E ++V G    ++L+    +        G  ++A +L + + +R +   LK 
Sbjct: 1079 FGVFVQI-EGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRINEEKRKISFGLKP 1137

Query: 807  VFID 810
             + D
Sbjct: 1138 SYFD 1141


>gi|328875120|gb|EGG23485.1| HAT repeat-containing protein [Dictyostelium fasciculatum]
          Length = 850

 Score =  229 bits (583), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/302 (40%), Positives = 189/302 (62%), Gaps = 7/302 (2%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAF 1561
            + K  +  KK  K E E+ I   EE LL++++ P +  +FER++  SPNSS++WI+YM+F
Sbjct: 549  NTKKQKIQKKLGKLEHERVISEREETLLDQNSVPESSGDFERVLLGSPNSSYIWIQYMSF 608

Query: 1562 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1621
             L M++++KAR I ERAL+ I   E  E+ N+WVA  N+EN YG   E+ ++ +F+RA+ 
Sbjct: 609  YLGMSEIQKARDIGERALKKILSSEVVEQRNVWVALLNMENMYGG--EDTLMTLFKRAIL 666

Query: 1622 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQA 1680
            Y DPK+++ A++ + E TE+    D       KK++HS K W+R  + L K QQ + +  
Sbjct: 667  YQDPKRMYFAIIQILEHTEKLDRVDPYFAMFFKKYRHSSKAWIRYAEYLAKTQQLDKLSE 726

Query: 1681 VVQR--ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1738
             + R   +  L + K I   S+   LEFK+G  +RGR++FE ++S  P RTDLW++Y+DQ
Sbjct: 727  TLSRLPRVEQLKKKKLIMITSKIGQLEFKHGNPERGRTVFESLISSNPSRTDLWNVYIDQ 786

Query: 1739 EIRL-GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            E++   +   IR LF+R ISL    + +K  FK+YL YEK  G+E  +  VKQ A++YVE
Sbjct: 787  ELKQENNAKNIRRLFDRCISLKTSDRNIKQFFKRYLSYEKDHGDESSVNNVKQLAIKYVE 846

Query: 1798 ST 1799
             +
Sbjct: 847  ES 848


>gi|241950924|ref|XP_002418184.1| rRNA biogenesis protein, putative [Candida dubliniensis CD36]
 gi|223641523|emb|CAX43484.1| rRNA biogenesis protein, putative [Candida dubliniensis CD36]
          Length = 1715

 Score =  228 bits (582), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/280 (40%), Positives = 177/280 (63%), Gaps = 13/280 (4%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1436 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQE 1495

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLNIW+A  NLEN +G   +E++   F++++QY D   +H  L+ +Y+ +E+   A +L 
Sbjct: 1496 KLNIWIALLNLENTFG--TDESLEDTFKKSIQYMDSFTMHEKLINIYKMSEKFDQAKQLF 1553

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
             +M KKF      W+     LL Q  Q+ +  ++ +AL  LP+ +HI  + + A LEF+ 
Sbjct: 1554 NRMTKKFGKILNTWVLYGSFLLDQHSQDEMHEILAKALNILPKREHIDLVKKFAQLEFQK 1613

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDL---IRGLFERAISL 1758
            G  ++GRS+FEG++++ PKR DLW++Y+DQEI+         D ++   +  LFER +S 
Sbjct: 1614 GDPEQGRSLFEGLVADAPKRIDLWNVYIDQEIKQDSKNSEEDDTNIKSKVEDLFERVLSK 1673

Query: 1759 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             +  K+ KF F K+L YE+   +E  I  VK KA EYV++
Sbjct: 1674 KITRKQAKFFFNKWLNYEEDKQDENMIARVKSKAAEYVQN 1713



 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 186/688 (27%), Positives = 325/688 (47%), Gaps = 52/688 (7%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
           L  IF +G  +   +   ++D K   K++I L++    + + L ++ +    +L   VKS
Sbjct: 179 LLKIFKLGSWLKAKITTSNEDFK--NKKRIELTIEPESVNESLEVDDLIVNNILQCSVKS 236

Query: 109 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVV------RSIDRTRKV 159
           IEDHG IL  G P ++GF+    L  N+ IDV    PGL++   +      R+I+    V
Sbjct: 237 IEDHGIILDTGKPEYSGFISNKELT-NAKIDVTTIVPGLVILCSIATKPSSRTINLKPIV 295

Query: 160 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
             +S+   TVS          SID + PG++V   +  + ENG++        GT+ +  
Sbjct: 296 ATISAKKSTVSTIS-------SIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQ 348

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK----- 272
           +QN F     K+ Y     V AR+L V     ++ + L++ P++L      S  +     
Sbjct: 349 IQN-FDLKELKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQTQALEAF 407

Query: 273 -VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 331
            +G ++D+ KV+  D+       +  +  S+  +  I     ++ + L   Y  GS  + 
Sbjct: 408 PIGHVFDEVKVIGNDKHY-----VYVSFGSSSLFGQIHQSKFDDNKTL-LDYSIGSTHKS 461

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGV 388
           R++GF  ++ L     ++   +       DV  G ++   +++ V  D  G  V+F    
Sbjct: 462 RVIGFNEVDNLLILSFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGVGINVKFFDEF 521

Query: 389 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYA 447
           K   P   MS+ ++V P +KF+VG +   R+L    KR  +T +K LV      ILS+  
Sbjct: 522 KGFVPGNQMSDIKLVYPERKFRVGTKTKGRLLNYNGKRALITFRKALVNLEDDEILSNID 581

Query: 448 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 507
           +A     T+  + K   +GC V F+  ++ F P++E+      + SS   VGQ+VK RI+
Sbjct: 582 QAEIGFKTNAIVEKFVPNGCIVSFFGNLRAFLPKTEISETFVEDASSYLKVGQIVKVRIL 641

Query: 508 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYS 561
                 +R+ ++ + + + +S     ++  LVSG  +V  V    T ++V+V  +   + 
Sbjct: 642 DINKEQKRLVVT-LKQSSELSNAQKNEINKLVSGKSIVKTVIVEKTKDSVLVE-LEGSHL 699

Query: 562 KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINS--AQ 616
           +G I    L+D + E    +   +  G    ++L+LD +  +  ++ +AK SLI +  ++
Sbjct: 700 RGVIYDGQLSDGNYEQNRALAKRLTIGESL-EVLILDKDLKARTVIATAKKSLIEALKSK 758

Query: 617 QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
             P D + +  N+VV GYV ++   G FV F GRLTG           + DLSK +Y  Q
Sbjct: 759 SFPVDFNDVTVNAVVKGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNAKEDLSKKFYKYQ 818

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSST 704
           S+   +L V+ E  R  L+L  S  S T
Sbjct: 819 SINCRVLSVDKENERFLLALNNSSSSFT 846


>gi|4454542|gb|AAD20941.1| apoptosis-linked gene 4, deltaC form [Mus musculus]
          Length = 768

 Score =  226 bits (577), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 208/745 (27%), Positives = 353/745 (47%), Gaps = 77/745 (10%)

Query: 323  YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 382
            +K GS  +  I+ +  ++ LA   L+ S        + D+K G VVKG V+A+  FG +V
Sbjct: 18   FKPGSTHKCXIIDYSQMDELALLFLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILV 77

Query: 383  QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 440
            +    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTLV SKL
Sbjct: 78   KVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKL 137

Query: 441  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
              ++ Y  A   L THG I +++ +GC V+FYN +QG  P+ EL      +P ++++ GQ
Sbjct: 138  PFITWYEGAKLGLQTHGVIIRVKDYGCIVKFYNDLQGLVPKHELSNPAIPDPETVFYTGQ 197

Query: 501  VVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDVVTPNA 550
            VVK  ++S  P+  R+ LSF ++  +R  +  +         V++G LV   V   T   
Sbjct: 198  VVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTG 257

Query: 551  VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 610
            + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL  K +
Sbjct: 258  LEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPA 316

Query: 611  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
            L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D      
Sbjct: 317  LVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTP 376

Query: 669  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-S 724
            S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   +    
Sbjct: 377  SEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLM 436

Query: 725  SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESG 783
            S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG  VE G
Sbjct: 437  SNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPG 496

Query: 784  SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 843
               +  +L V   +  V +SL    ++R           K ++ R++S+    HQ    I
Sbjct: 497  QKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KPRKLRKSSR----HQ---GI 538

Query: 844  VEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGR 902
            V+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+       T G 
Sbjct: 539  VQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVT-GL 597

Query: 903  LLLL---------LKAISETETSSSK------------------RAKKKSSYDVGSLVQA 935
            +L +         +    ++ET   K                  ++KK+ S  +G  V  
Sbjct: 598  ILAVEGPVFKRTRMPVQRDSETVDDKGEEKEEEEEEKEEENLTVKSKKRHSLAIGDKVTG 657

Query: 936  EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KS 991
             I  +K   + +    GF G  H + + DD   V  +  +  K G+ VTAR+I     K+
Sbjct: 658  TIKAVKATHVVVTLADGFVGCFHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKT 716

Query: 992  NK--PDMKKSF---LWELSIKPSML 1011
            +K  P     F   + ELS++PS L
Sbjct: 717  SKFLPISHPRFVLTILELSVRPSEL 741



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 2/168 (1%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            +  D+    +V+G V  +   G  + +  ++   V   +L+D  +++PEK++  G  V  
Sbjct: 53   RYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKC 112

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            RVL  +P +K++ +TLK +   T+    I       +G    G I RV+ YG  +   N 
Sbjct: 113  RVLLCDPEAKKLIMTLKKT-LVTSKLPFITWYEGAKLGLQTHGVIIRVKDYGCIVKFYN- 170

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            +L GL    ELS   + + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 171  DLQGLVPKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFR 218



 Score = 47.4 bits (111), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 148/360 (41%), Gaps = 38/360 (10%)

Query: 188 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 247
           G +V   V +I   G+++       G V   HL +     N +  Y+   +V  R+L  D
Sbjct: 60  GTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIM-MKNPEKKYSPGDEVKCRVLLCD 118

Query: 248 PTSRAVGLTLNPYLLHNRAP------------PSHVKVGDIYDQSKVVRVDRGLGLLLDI 295
           P ++ + +TL   L+ ++ P             +H  +  + D   +V+    L  L  +
Sbjct: 119 PEAKKLIMTLKKTLVTSKLPFITWYEGAKLGLQTHGVIIRVKDYGCIVKFYNDLQGL--V 176

Query: 296 PSTPVSTPAYVTISDV-AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 354
           P   +S PA      V    +V K+     E S  R+ +L FR    L+    K    E 
Sbjct: 177 PKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERM-LLSFRL---LSDSRPKDPGVES 232

Query: 355 LVFTHSDVKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKP--GKKFKV 411
                  V+ G +V  KV+     G  +   P    A  P PH+S+     P      + 
Sbjct: 233 SQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQT 292

Query: 412 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILS---------SYAEATDRLITHGWITKI 462
           G  L  RVL      ++ + +  L+  K A++S         S +E    ++  G++  I
Sbjct: 293 GDTL-HRVLC-----LSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCI 346

Query: 463 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
           +++G FV+F +G+ G +P++ +       PS  +  GQ V  ++ +   + +R+ LS  +
Sbjct: 347 KEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRL 406



 Score = 44.3 bits (103), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 161/392 (41%), Gaps = 45/392 (11%)

Query: 929  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
            +G++V+  +  IKP  + +K G    G +    + D    +++N    +  G  V  R++
Sbjct: 59   IGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD---IMMKNPEKKYSPGDEVKCRVL 115

Query: 989  AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC--DVSIGQRVTGYVYKVDNEWAL 1046
                 P+ KK  +   ++K +++T     SKL F        +G +  G + +V +   +
Sbjct: 116  L--CDPEAKKLIM---TLKKTLVT-----SKLPFITWYEGAKLGLQTHGVIIRVKDYGCI 165

Query: 1047 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106
            +     L  Q  +         + + +  F+ G+ V   VLS    K+ + L  R   D 
Sbjct: 166  VKFYNDL--QGLVPKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLLSDS 223

Query: 1107 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELKNICV 1165
                    S+      +  G +V  ++  +     GL V I PH     +    L +   
Sbjct: 224  RPKDPGVESSQKKTGAVRIGQLVDVKV--LEKTKTGLEVAILPHNTPAFLPTPHLSDHAA 281

Query: 1166 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1225
            + PL  +     D L           +VL +S++ R   H+ L  + +L  +S+      
Sbjct: 282  NGPLLHHWLQTGDTLH----------RVLCLSQSER---HILLCRKPAL--VSTVEG--- 323

Query: 1226 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1285
                   G+  + + ++ P M++ G+VK +   G F+     L      + +SD +V +P
Sbjct: 324  -------GQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTP 376

Query: 1286 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
             + F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 377  SEHFVEGQTVVAKVTNVDESKQRMLLSLRLSD 408


>gi|255724334|ref|XP_002547096.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134987|gb|EER34541.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 1722

 Score =  226 bits (576), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 115/277 (41%), Positives = 174/277 (62%), Gaps = 9/277 (3%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L   AP++  +FERL+  +PNSS +W+ YM+F L ++++EKAR I +RAL+TIN REE E
Sbjct: 1447 LNTRAPQSVSDFERLLIGNPNSSILWMNYMSFQLQLSEIEKAREIGQRALKTINYREEQE 1506

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLNIW+A  NLEN +G   +E +  VF++A+QY D   +H  L+ +Y  +E+   A EL 
Sbjct: 1507 KLNIWIAMLNLENTFG--TDETLEDVFKKAVQYMDAFVIHQKLVNIYIISEKFDQAIELF 1564

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
              M KKF  +   W+     LL Q+  + V  V+ +AL  LP+  HI+ + + A LEF+ 
Sbjct: 1565 KVMTKKFGKNISTWVMYGSFLLDQKLNDEVHEVLSKALSILPKRDHIELVKKFAQLEFQK 1624

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD------LIRGLFERAISLSLPP 1762
            G  ++GRS+FEG++++ PKR DLW+IY+DQEI+    +       +  LFER ++  +  
Sbjct: 1625 GDPEQGRSLFEGLIADAPKRIDLWNIYIDQEIKQDKEEDESSKGKVEELFERVLTKKITR 1684

Query: 1763 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1799
            K+ KF F K+L +E+   +E  I  VK KA EYV++ 
Sbjct: 1685 KQAKFFFNKWLNFEEDKEDESMIARVKAKAAEYVQNN 1721



 Score =  192 bits (489), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 172/672 (25%), Positives = 319/672 (47%), Gaps = 37/672 (5%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
           L +IF +G  +   V   ++D K   K++I L++    + + L  + +    +L   VKS
Sbjct: 181 LSSIFKIGSWLKAKVSSSNEDIKT--KKRIQLTVEPEFVNESLETDDLIINNILQCSVKS 238

Query: 109 IEDHGYILHFGLPSFTGFLPRNNLAE-NSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDP 166
           +EDHG IL  G   ++GF+    L+  N  +D +KPGL++   + S    R +    +  
Sbjct: 239 VEDHGIILDTGKSEYSGFISNKELSNANLEVDSIKPGLVILCAISSKVSGRTINLKPTSS 298

Query: 167 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 226
            ++ K     +   SID +  G++V   +  I +NG++        GT+ +  + N F  
Sbjct: 299 VSIKKGAVTTIS--SIDSIQAGVVVDALINEITDNGLITKVYGLVDGTIALSQIHN-FDI 355

Query: 227 TNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIYD 278
            + K+ Y     V AR+L V     ++ + L++ P++L      +  K      VG ++D
Sbjct: 356 KDLKHKYAIGTNVKARVLAVLSKNGTKKLILSILPHVLQLGNHSAEEKALEAFPVGHVFD 415

Query: 279 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 338
           + KV+  D     +    ST +       I D       K    Y  GS  + R++GF  
Sbjct: 416 KVKVIGNDTNYLYVEFGSSTMIGQVHNSKIDD------DKTLLDYTVGSTHKSRVVGFNA 469

Query: 339 LEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGA--IVQFPGGVKALCPLP 395
           ++ L     ++   E       D+  G ++   +++ V   GA   V+     K   P  
Sbjct: 470 VDNLLILTFESKIIEAKYLKAQDIPIGTLLSNVEILKVLEGGAGINVKVFDDFKGFVPSN 529

Query: 396 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLI 454
            MS+ ++V P +KF+VG+++  R+L +K KRI +T +K+LV      ILS + +A     
Sbjct: 530 QMSDIKLVYPERKFRVGSKVKGRLLDIKGKRIYITLRKSLVNLEDDEILSRFDQAEIGFK 589

Query: 455 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 514
           T+  + K   +GC V+F+  ++ F P++E+        S+   +GQ+VK R++       
Sbjct: 590 TNAIVEKFVPNGCIVKFFGNLRAFLPKTEISETFVDNASNYLKLGQIVKVRVLDINKDEE 649

Query: 515 RINLSFMMKP--TRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 569
           R+ ++       +   ++++ KL    S+V+ V+   T ++++V  + +   +G +    
Sbjct: 650 RLIVTLKQSSELSNAQKNEISKLESGKSVVNAVIVEKTKDSILVE-LEESNLRGVVADGQ 708

Query: 570 LAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSA--QQLPSDASH 624
           L+D + E    +   +K G +  ++L+LD +  +  ++ +AK SLI +A  +  P+D + 
Sbjct: 709 LSDGNYEQNRSLAKKLKVGEKL-EVLILDKDLKARTVIATAKPSLIEAAKGKSFPTDFND 767

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           I  N VV GY+ ++   G FV F GRLTG           + DL+K +Y  QSV   ++ 
Sbjct: 768 IQINKVVKGYIKSVTNLGLFVTFTGRLTGLVLAKYVTKNGKEDLTKKFYKYQSVTCRVIS 827

Query: 685 VNSETGRITLSL 696
           ++ E  R  L+L
Sbjct: 828 IDQENERFLLTL 839



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 103/228 (45%), Gaps = 7/228 (3%)

Query: 308  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK--ASAFEGLVFTHSDVKPG 365
            I+D  E    KL+  Y++   V  R+L         +  L+  A A + ++ + SD++ G
Sbjct: 1092 ITDALENYSDKLDHVYEQNDYVSARVLDIDEDNKRISVSLRDDAEAADKVINSVSDLERG 1151

Query: 366  MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 425
             V+KG +  + + G  V     + AL  +  +S+  +    K FK    ++ +++  K +
Sbjct: 1152 HVIKGFIKNIANNGVYVSLGRSIHALVRVSDLSDSYLKDWKKFFKPNQMVIGKIVNCKEE 1211

Query: 426  -RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQGFAPRS 482
             R+ +T K++ V  +L ++ S+ + +   I  G +T     G FV+      V G    S
Sbjct: 1212 GRVLMTLKESEVNGELKLMKSFDDLSVGDIFEGTVTSTTDFGVFVKLDGTVNVSGLCHHS 1271

Query: 483  ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
            E+  +       ++  G  VK +I+     S +  LS  MK +  +ED
Sbjct: 1272 EISENDVENVKMLFGDGDRVKVKILK--IDSEKKQLSLGMKASYFAED 1317



 Score = 44.3 bits (103), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 146/356 (41%), Gaps = 44/356 (12%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 144
            L LE V+ G  L  +V +I   G +     PS  G +   +L  +  I  D+      G 
Sbjct: 971  LKLEDVKVGDKLLGFVNNIA-KGLVWVSISPSLKGRVSFLDLTNDGSIFQDIDNKLPIGS 1029

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
             ++  V+ +D   K + L++    V K           D +V G     RV  I  N V+
Sbjct: 1030 AIKVTVKQVDLEHKTLSLTTRDKFVEK----------FDDVVKGETYPARVLKIKPNHVL 1079

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 264
            +        +  I      + +    + Y Q+  V+AR+L +D  ++ + ++     L +
Sbjct: 1080 VELGPDVIASSFITDALENY-SDKLDHVYEQNDYVSARVLDIDEDNKRISVS-----LRD 1133

Query: 265  RAPPSHVKVGDIYDQSKVVRVDRG---LGLLLDIPSTPV------STPAYVTISDVAEEE 315
             A  +   +  + D      ++RG    G + +I +  V      S  A V +SD+++  
Sbjct: 1134 DAEAADKVINSVSD------LERGHVIKGFIKNIANNGVYVSLGRSIHALVRVSDLSDSY 1187

Query: 316  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKV 372
            ++  +K +K    V  +I+  +  EG     LK S   G   L+ +  D+  G + +G V
Sbjct: 1188 LKDWKKFFKPNQMVIGKIVNCKE-EGRVLMTLKESEVNGELKLMKSFDDLSVGDIFEGTV 1246

Query: 373  IAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
             +   FG  V+  G   V  LC    +SE ++      F  G  +  ++L + S++
Sbjct: 1247 TSTTDFGVFVKLDGTVNVSGLCHHSEISENDVENVKMLFGDGDRVKVKILKIDSEK 1302


>gi|388855273|emb|CCF51167.1| related to RRP5-processing of pre-ribosomal RNA [Ustilago hordei]
          Length = 1566

 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 116/270 (42%), Positives = 176/270 (65%), Gaps = 4/270 (1%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L   AP +  +FERL+  SPNSSF+WI++M+F L ++DV+KARSIA RAL+ IN REE E
Sbjct: 1282 LASKAPESATDFERLLLGSPNSSFLWIQFMSFALQLSDVDKARSIARRALKVINYREEQE 1341

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            ++N+W+A  NLEN YG+  EE +   F+ A+Q  D   ++L ++ + E + +   A+E+ 
Sbjct: 1342 RMNVWIALLNLENTYGS--EETLESTFKEAVQANDGFTMYLKMVNILEASNKISGAEEMF 1399

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
             K   K+  S + W+   +  L+  Q  + +A++ RA+ +L + +H   I+  AI EFK 
Sbjct: 1400 TKAKGKYSTSPEFWMEYARFYLRTSQPDLSRALLPRAMQALEKREHTYTITAFAINEFKL 1459

Query: 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-GDVDLIRGLFERAISLSLPPKKMKF 1767
            G  +RGR++FEG++  YPKR DLW  Y+DQE RL G+ + +R LFERA++L L  KK K 
Sbjct: 1460 GDPERGRTIFEGLVDSYPKRLDLWWQYIDQESRLEGNQEQVRNLFERAMTLKLTAKKGKS 1519

Query: 1768 LFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            L KK+LEYEK  G+ +  + V  +A E+V+
Sbjct: 1520 LLKKWLEYEKKNGDGKSQQKVIGRAKEFVD 1549



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 151/560 (26%), Positives = 256/560 (45%), Gaps = 53/560 (9%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSLETV 96
           L  +FHVGQ +   V+Q+       G+            R++ LSL   L+  G++L  +
Sbjct: 236 LRDLFHVGQWLVASVVQVRGGDVAKGRPTREGGEYEKESRRVELSLAPHLVNTGVTLSDL 295

Query: 97  QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--NSGIDVKPGLLLQ------G 148
             G  L+A + S+EDHGY+L  G+P F GF+P  + A+  +S    K G LLQ       
Sbjct: 296 DAGATLSASISSVEDHGYMLDSGIPEFRGFVPFADAAKLPSSFHARKNGKLLQVGSVVFA 355

Query: 149 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 208
            +  I   R+    + DP TVS    K +   SI  ++PG +    + + L  G+ +   
Sbjct: 356 KITKIPENRRSFEATFDPKTVSTSPIKHVP--SITSILPGTLTKVLITAALPTGLNVKLF 413

Query: 209 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 255
             F  T+D FHL       + ++ Y +  K  AR+L+  + P S           R  GL
Sbjct: 414 GMFDATIDRFHLPQLPEGKDIQDVYKEGSKHVARVLWDLLAPPSTALQGDNPDHERKFGL 473

Query: 256 TLNPYLLHNRAPPS-------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 308
           +L P +L  +AP +       H        + KVV+     GL++ I +T +    +V I
Sbjct: 474 SLAPQVLALQAPVAKDQQLLQHAYPIGAPLKVKVVQTINDWGLIVSIHNTDLR--GFVHI 531

Query: 309 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 365
           S V+++ V  L      + +G+  + R++G    +      LKAS  E      S+V+ G
Sbjct: 532 SQVSDDHVVSLPPSSGPFAKGTEHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVG 591

Query: 366 MVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
            +V   +I +     I +Q  G V  +    H ++ ++  P K+FK G ++  RV+ V  
Sbjct: 592 EIVNANIIKLGLPNTIFLQLHGHVDGVVFANHFADVKLTHPEKRFKPGLQVKARVMDVDP 651

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
              RI +T KK+LVKS L I++S  +A   ++TH  + +++ +   V  + G++   P  
Sbjct: 652 SRNRIVLTCKKSLVKSDLPIVASMQDARVGVVTHATVFRVQTNSLIVSLFGGLKALVPGR 711

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---DLVKLGSLV 539
           E+  D   +    +  G+VVK RI      ++++  S     +        D V++G  V
Sbjct: 712 EVSEDDFNDVKDSFTEGKVVKMRITEVDYENQKLVGSIKQASSEYLAKLNVDAVEVGEKV 771

Query: 540 SGVVDVVTPNAVVVYVIAKG 559
           +G V  V    VV+ ++  G
Sbjct: 772 TGKVAAVHKEVVVLSLVPSG 791



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 147/668 (22%), Positives = 258/668 (38%), Gaps = 101/668 (15%)

Query: 106  VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP--GLLLQGVVRSIDRTRKVVYLS 163
            V++I D G I+        GF+  + ++++  + + P  G   +G     +   +VV  S
Sbjct: 508  VQTINDWGLIVSIHNTDLRGFVHISQVSDDHVVSLPPSSGPFAKGT----EHKARVVGHS 563

Query: 164  SDPDTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSI-LENGVMLSFLTYFTGTVDIFH 219
                T+    K    + K + +  +  G +V+  +  + L N + L    +  G V   H
Sbjct: 564  PTDRTLQLSLKASVLERKFMRVSEVEVGEIVNANIIKLGLPNTIFLQLHGHVDGVVFANH 623

Query: 220  LQN---TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP--------- 267
              +   T P   +K       +V AR++ VDP+   + LT    L+ +  P         
Sbjct: 624  FADVKLTHPEKRFKPGL----QVKARVMDVDPSRNRIVLTCKKSLVKSDLPIVASMQDAR 679

Query: 268  ---PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 324
                +H  V  +   S +V +  GL              A V   +V+E++   ++  + 
Sbjct: 680  VGVVTHATVFRVQTNSLIVSLFGGL-------------KALVPGREVSEDDFNDVKDSFT 726

Query: 325  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD-VKPGMVVKGKVIAVDSFGAIVQ 383
            EG  V++RI    +      G +K ++ E L   + D V+ G  V GKV AV     ++ 
Sbjct: 727  EGKVVKMRITEVDYENQKLVGSIKQASSEYLAKLNVDAVEVGEKVTGKVAAVHKEVVVLS 786

Query: 384  F-PGGVKALCPLPHMSEFEIVKPG---KKFKVGAELVFRVLGVK--SKRITVTHKKTLVK 437
              P GV+AL  L  ++           +  +   E+   V+ VK  +K I +   K    
Sbjct: 787  LVPSGVRALLSLSVLAAMRGTTSEALLESLEEDHEIEDLVVSVKNPAKGIVIVADKVRSG 846

Query: 438  SKLAILSSYAEATDRLITHGWITK---IEKHG----CFVRFYNGVQGFAPRSELGLDPGC 490
                  ++   AT   +  G + +   IEK+     C V      +     ++L  +   
Sbjct: 847  KSTDHSAANGTATSAQVKQGAVVQGRVIEKNSKYLDCIVALGTATRAKLHITDLSDNYSS 906

Query: 491  EPSSMYHVGQVVKCRIMSSIP----------ASRRINLSFMMKPTRVSEDDLVKLGSLVS 540
            + S++ + GQ V C I+S  P           SR      ++ P   S  DL K G  + 
Sbjct: 907  DSSTLPNPGQSVLCYILSLKPNGKSAVISTRPSRTTGSGGIVDPEISSISDLTK-GQKIR 965

Query: 541  GVVDVVTPNAVVVYVIAKGYSKGTI-----------PTEHLADHLEHATVMKSVIKPGYE 589
            G V  +T   + + +  K  ++  +            T      +   T+M   + PG  
Sbjct: 966  GFVKAITNVGLFITIGRKLDARVQVRELFDEFVRDWKTRFTLGQVVSGTIMD--LNPG-- 1021

Query: 590  FDQLLVLDNESSNLLLSAKYSLINSAQ-----------QLPSDASHIHPNSVVHGYVCNI 638
                   +NE    L S   S+   A+           Q P   +       V G++ NI
Sbjct: 1022 -------NNEVEMSLKSTPGSIKPRAEKVEERAQAMQKQRPKRLTDFKVGDKVKGFIKNI 1074

Query: 639  IETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            I  G FV+  G  ++G A  ++  DG+  +  K + VG  VR+ +L VN E  +I+  LK
Sbjct: 1075 IGFGVFVQIEGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRVNEEKRKISFGLK 1134

Query: 698  QSCCSSTD 705
             S   + D
Sbjct: 1135 PSYFDAAD 1142



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 18/187 (9%)

Query: 631  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
            + G+V  I   G F+    +L       +  D    D    + +GQ V   I+D+N    
Sbjct: 964  IRGFVKAITNVGLFITIGRKLDARVQVRELFDEFVRDWKTRFTLGQVVSGTIMDLNPGNN 1023

Query: 691  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 750
             + +SLK     ST  S       +EE+   +Q  +      K +  F +G  ++G +  
Sbjct: 1024 EVEMSLK-----STPGSIKPRAEKVEERAQAMQKQRP-----KRLTDFKVGDKVKGFIKN 1073

Query: 751  SNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLS 803
               FGV V   E ++V G    ++L+    +        G  ++A +L V + +R +   
Sbjct: 1074 IIGFGVFVQI-EGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRVNEEKRKISFG 1132

Query: 804  LKTVFID 810
            LK  + D
Sbjct: 1133 LKPSYFD 1139


>gi|321258889|ref|XP_003194165.1| rRNA processing-related protein [Cryptococcus gattii WM276]
 gi|317460636|gb|ADV22378.1| rRNA processing-related protein, putative [Cryptococcus gattii WM276]
          Length = 1486

 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/265 (41%), Positives = 173/265 (65%), Gaps = 3/265 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P +  E+ER + +SPNSSF+WI+YM+F L + ++EKAR I  +AL+ I+ REE+EKLN+W
Sbjct: 1208 PSSTAEYERALLASPNSSFLWIQYMSFHLQLHEIEKARKIGRQALEKISYREEDEKLNVW 1267

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            +A  NLE  +G     A  KVF+ A QY D + V++      +   +++  +EL  K++K
Sbjct: 1268 MALINLEIAFGTV--SATEKVFEEAAQYNDKRTVYMRYAEALQVAGKDEALEELFKKIVK 1325

Query: 1655 KFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            KF    + W R  +  L K   E  +A++ R++ SL R KH++ I + A+LEFK+G  +R
Sbjct: 1326 KFSAYPESWTRFAEFYLNKSDVEAARALLPRSMKSLDRSKHVETIEKMALLEFKHGDTER 1385

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
            G+++FEG++ ++PKR DLW +Y+DQ  ++GD+  +RGL +RA+   L  KK KFLFKK+L
Sbjct: 1386 GKTLFEGLVDKFPKRLDLWGVYIDQVAKVGDIQGVRGLVDRALEQKLTSKKAKFLFKKWL 1445

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVES 1798
              E+ +G+    +  K KA E+VE+
Sbjct: 1446 TIEQRIGDVAGQDKAKTKAREWVEA 1470



 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 135/539 (25%), Positives = 253/539 (46%), Gaps = 40/539 (7%)

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRNNLAEN-SGIDVKPGLLLQGV 149
           ++ G  L   V+S ED G+I+  GL      S  GF+ ++ +A+      + PG LL   
Sbjct: 246 LETGYFLVGEVRSEEDKGWIIGVGLNTENGSSVEGFVSKDEVAKFVPAQALIPGQLLPAT 305

Query: 150 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 209
           + SI    +VV+LS +   +++    ++   ++  +VPG  V+  + +++ +G+ +    
Sbjct: 306 ISSIAAGGRVVHLSLNQQDIARSQISEVS--TVGSIVPGHSVNALITAVVPSGLNVKVAG 363

Query: 210 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF----VDPTSRAVGLTLNPYLLHNR 265
           +F GT+D+ HL       + ++ Y   KK+ AR+++     +P S A  L+  P++L+  
Sbjct: 364 FFDGTIDLAHL--PLGDDDIEDKYKIGKKIRARVIYDNLAANPHSFA--LSALPHVLNLT 419

Query: 266 APPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 316
           +P            + +G +Y  +KV RV    G+++    T      +V IS +A+E +
Sbjct: 420 SPTQEGDDTPLELAIPIGKVYQSAKVTRVLNDWGVMV---RTQDGLEGFVHISHLADERI 476

Query: 317 RKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
             L     ++K G+  R R++G   ++G+     + S    L    S++K G  ++G + 
Sbjct: 477 PVLSNATPQFKVGTLHRARVIGHSPMDGVLLLSFEQSVLSQLFMQVSELKIGQQLRGTIR 536

Query: 374 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTH 431
            +      V   G V  +    H ++  +  P K+FK  A +  RVL ++    R+ +T 
Sbjct: 537 RLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEASVKARVLYLEPARNRVVLTL 596

Query: 432 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 491
           KKT ++S LA+  S+ +     +T G + KI   G  V  + G++ F P SE       +
Sbjct: 597 KKTFLESDLAVPQSFEDLKVGEVTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTHIKD 656

Query: 492 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPN 549
            S  ++VG+ +  R+++  P++ RI +S              KL  G  VSG V  V   
Sbjct: 657 LSEAFYVGKPLTVRVITLDPSTSRIVVSVKQAAPTAPATAAEKLEVGEAVSGTVSQVHTE 716

Query: 550 AVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD-NESSNLLL 605
            VVV +   G     +   +L++   H  +  ++  +K G + D L+V+  N  S L++
Sbjct: 717 QVVVKLEGSGLI-ALLSLSNLSNQ-RHTGIEELRRSLKQGEKIDDLVVVSKNPVSGLII 773



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 18/243 (7%)

Query: 466 GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
           G  VR  +G++GF   S L    +      +  + VG + + R++   P    + LSF  
Sbjct: 453 GVMVRTQDGLEGFVHISHLADERIPVLSNATPQFKVGTLHRARVIGHSPMDGVLLLSFEQ 512

Query: 523 KP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEH 576
                   +VSE   +K+G  + G +  +T    +++V   G   G +   H AD  L+H
Sbjct: 513 SVLSQLFMQVSE---LKIGQQLRGTIRRLTDK--MLFVNVHGNVDGIVHPTHYADIRLKH 567

Query: 577 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 635
               +   KP      ++L L+   + ++L+ K + + S   +P     +    V  G V
Sbjct: 568 P---QKRFKPEASVKARVLYLEPARNRVVLTLKKTFLESDLAVPQSFEDLKVGEVTLGSV 624

Query: 636 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
             I++ G  V     L  F P S+       DLS+ +YVG+ +   ++ ++  T RI +S
Sbjct: 625 LKIVDKGVIVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITLDPSTSRIVVS 684

Query: 696 LKQ 698
           +KQ
Sbjct: 685 VKQ 687



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 99/206 (48%), Gaps = 11/206 (5%)

Query: 151  RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 210
            R+ID + ++  +    D V + +       ++D L  G  V   V++I  +GV +S    
Sbjct: 873  RAIDLSTRLSRVEGKEDVVDREIN------TVDDLKQGETVRGLVKNIAGHGVFVSLGRN 926

Query: 211  FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH 270
             T  + I  L + +   +W++ +  ++ V+ +IL ++P S ++ +TL      +    + 
Sbjct: 927  VTARIMIKELFDEY-VKDWESRFEINQLVSGKILSINPKSNSIEMTLRKNPSKSAKKTAL 985

Query: 271  VKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEG 326
            + + D  +  KVV V R     G+ L I  + VS   + + ++D  + +V +  K ++EG
Sbjct: 986  LSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEVTDNRKADVAQALKGFREG 1045

Query: 327  SCVRVRILGFRHLEGLATGILKASAF 352
              V+ +I+     +G  +  +KAS F
Sbjct: 1046 DQVKAKIVSIDTEKGKISFGIKASYF 1071



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 108/514 (21%), Positives = 216/514 (42%), Gaps = 63/514 (12%)

Query: 233  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHN--RAPPS--HVKVGDIYDQSKVVRVDRG 288
            +     V AR+L+++P    V LTL    L +    P S   +KVG++   S +  VD+G
Sbjct: 572  FKPEASVKARVLYLEPARNRVVLTLKKTFLESDLAVPQSFEDLKVGEVTLGSVLKIVDKG 631

Query: 289  LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 348
            +     I        A++  S+ ++  ++ L + +  G  + VR++            +K
Sbjct: 632  V-----IVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITLDPSTSRIVVSVK 686

Query: 349  ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEF------E 401
             +A          ++ G  V G V  V +   +V+  G G+ AL  L ++S        E
Sbjct: 687  QAAPTAPATAAEKLEVGEAVSGTVSQVHTEQVVVKLEGSGLIALLSLSNLSNQRHTGIEE 746

Query: 402  IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI---------LSSYAEATDR 452
            + +  K+ +   +LV       S  I V  KKT+   K            +S+  +A D 
Sbjct: 747  LRRSLKQGEKIDDLVVVSKNPVSGLIIVNIKKTIAAKKEKEKKEDKAPSGISANVKAIDA 806

Query: 453  L----ITHGWITKIEKHGCFVRFYNGVQGFA----PRSELGLDPGCEPSSMYHVGQVVKC 504
            +    I  G + +    G  ++  N ++G         +L +  G  P S   +G+ V C
Sbjct: 807  IEVGQIVTGTVQEQTPQGYMIQLPNNLRGRVHPCDSSDDLVVAAGRGPLS---IGEEVTC 863

Query: 505  RIMSSIPASRRINLSFMMKPTRVSED---------DLVKLGSLVSGVVDVVTPNAVVVYV 555
             +++   + R I+LS  +      ED         D +K G  V G+V  +  + V V  
Sbjct: 864  YVLAVNKSKRAIDLSTRLSRVEGKEDVVDREINTVDDLKQGETVRGLVKNIAGHGVFVS- 922

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYS 610
            + +  +   +  E   ++++         +  +E +QL     L ++ +S+++ ++ + +
Sbjct: 923  LGRNVTARIMIKELFDEYVKD-------WESRFEINQLVSGKILSINPKSNSIEMTLRKN 975

Query: 611  LINSAQQLP-SDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADL 668
               SA++      S       V   V  +   G F++  G  ++G   +S+  D ++AD+
Sbjct: 976  PSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEVTDNRKADV 1035

Query: 669  S---KTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            +   K +  G  V++ I+ +++E G+I+  +K S
Sbjct: 1036 AQALKGFREGDQVKAKIVSIDTEKGKISFGIKAS 1069


>gi|403353839|gb|EJY76463.1| S1 RNA binding domain containing protein [Oxytricha trifallax]
          Length = 2023

 Score =  223 bits (568), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 115/321 (35%), Positives = 201/321 (62%), Gaps = 25/321 (7%)

Query: 1503 DEKNNRHAKK--KEKEEREQEIRAAEERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYM 1559
            D K  +  K+  K++ + EQEIR  E+ L + K+ P+T +++ERL+  + + S+VWI+YM
Sbjct: 1689 DNKKKQSGKQSLKQRVKEEQEIRKKEKSLKDNKEQPKTIEDYERLIVQNKDQSYVWIQYM 1748

Query: 1560 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1619
            AFM+    +E AR + ERA+++++I  E +K N+W+AY NLEN +G   +E + KV +RA
Sbjct: 1749 AFMIDKLGLESARKVVERAVKSVSISNEEDKFNLWIAYMNLENNFGT--QETLEKVIKRA 1806

Query: 1620 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ-----RLLKQQ 1674
            L+  D K+++L L+ +Y+ +++ +  +E+   + KK+  S K+W   ++     R LK+ 
Sbjct: 1807 LEVNDRKRIYLQLISIYQASQKYQYIEEIYKSLCKKYNTSLKIWSAYLEFLFTMRDLKKD 1866

Query: 1675 QEGV----------QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1724
            +             + V+QRAL SLP+ +H+  IS+   LEFK+G  + GR+M EGI++ 
Sbjct: 1867 KSNFLVKEVTVAEPKQVLQRALQSLPKDEHVNIISKYGQLEFKHGQPESGRTMLEGIVTN 1926

Query: 1725 YPKRTDLWSIYLDQEIRLG--DVDLIRGLFERAIS---LSLPPKKMKFLFKKYLEYEKSV 1779
            YPKR D+W+IY+D E +    +    R LFER ++   +   PKKMK +F+KY+E+E + 
Sbjct: 1927 YPKRMDIWAIYMDMESKYSGENKQQARHLFERCLTNEQILKKPKKMKLVFQKYMEFEMNH 1986

Query: 1780 GEEERIEYVKQKAMEYVESTL 1800
            G ++ +E ++++  +Y+E+  
Sbjct: 1987 GNKKNVEKLRERVEQYLENAF 2007



 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 133/510 (26%), Positives = 227/510 (44%), Gaps = 71/510 (13%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEI---GKR--KIWLSLRLSLLYKGLSLETVQEGMVLT 103
           L   F +GQ +   VL     K      G R  K+ L++++  L K LS E +   M+L 
Sbjct: 174 LADKFKIGQFIIASVLSAGTSKYNTETSGNRNKKLQLTIQIDHLNKSLSAENLAPNMLLQ 233

Query: 104 AYVKSIEDHGYILHFGLPSFT-GFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV-- 160
             V+S E  G++++FGL   T GFLP  N  ++  I    G L+Q +++++  + KV   
Sbjct: 234 GLVESKEAKGHLINFGLKDKTKGFLPFTNDTQHLQI----GSLVQVLIKTVLASSKVAKC 289

Query: 161 -YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
            +++   +   + +  ++K I+I  L PG MV+++V  IL+NG+ L+FL  F GT+   H
Sbjct: 290 EFINQSVEEYHQYM--NVKDITIHNLKPGFMVNSKVSKILDNGIELTFLGGFKGTIFTDH 347

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-------LHNRAPPSHVK 272
           L  + PT      Y   +K+ AR++ VDP ++ V ++L P++       ++N    S V 
Sbjct: 348 LDKSDPTK-----YKIGEKIGARVIAVDPQAQNVQMSLLPHIKQMNDKVVYNTMKQSGVH 402

Query: 273 VGDIYDQSKV----------VRVDRGLGLLLDIPST---------------PVSTPAYVT 307
           VG I +++ V          V+  +     L    T               P  +     
Sbjct: 403 VGQIIEKATVEKELYGGSYKVKFGKDQIAFLHKSHTKEDVVPEEEEEEEEIPTQSKDKKQ 462

Query: 308 ISDVAEEEV---RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
                 +E+   +KLEK         VR+    + +GL    +K         T+ D+K 
Sbjct: 463 KVAKKSDELEVGQKLEK---------VRVKEINYFDGLPILSIKEDILNSATLTYEDLKC 513

Query: 365 GMVVKGKVIAV--DSFGAIVQFPGGVKALCPLPHMSEFEI-VKPGKKFKVGAELVFRVLG 421
           G  +   V  V  D     +Q    VK    L HM++F + V P K   +G  L  RV  
Sbjct: 514 GDYISTMVTEVNEDKKFVTLQVNDFVKGRLYLEHMADFPMKVIPPKYKDLGKTLKMRVFN 573

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V  K++ +  T K TL+K+K+ +  SY E       +G I    ++G  V+ + G++G  
Sbjct: 574 VDKKTRTLDFTRKDTLLKAKVPVYQSYREVEKGSKLYGVIVGENEYGYVVKSFGGIKGLL 633

Query: 480 PRSELGLDPGCEPS--SMYHVGQVVKCRIM 507
             +++  +        S    G +VK  ++
Sbjct: 634 TFADIKANSKGSKKDFSSLKFGSIVKAYVL 663



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 179/407 (43%), Gaps = 49/407 (12%)

Query: 604  LLSAKYSLINSAQQLP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 660
            ++S++Y LI     +P   +D S    N +  G V    ++G  V+FL  L         
Sbjct: 807  IISSQYDLIQLKDSIPRKNADISTDAINRIFTGVVSESNKSGVMVKFLDGLKKLVIIKDL 866

Query: 661  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 720
               Q  + S+ Y  G+ VR  +  +N       L LK +     D + +Q+    ++++ 
Sbjct: 867  ETVQ--NFSEIYKPGKVVRVALNKLNR------LCLKNNVIYLNDQTLIQK----DKELQ 914

Query: 721  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-THHQLAGAT 779
            +        ++LK  E   IG  I+G++    D+G++VS E++  + GF+ + HQ++G T
Sbjct: 915  IRSFYSEIETQLKAHE-IKIGDKIQGEISLVKDYGLIVSVEKYEGLTGFVLSEHQVSGRT 973

Query: 780  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 839
             + G  I   ++D+   + ++DLS      ++  E   ++ ++  K         G +Q 
Sbjct: 974  HKEGQKITCIVMDIDFEKEIIDLS------EKLAENTKSKDSKIAK---------GSNQK 1018

Query: 840  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ--KFPQKQFLNGQSVIATVMALPSS 897
            V  IVE+ KE+YL++S        G      YN    + P ++F  G  +   ++     
Sbjct: 1019 V--IVELNKEDYLIVSFKNNKSQFGLLMAQTYNNDHSENPNEKFTIGDELDVQIV---DQ 1073

Query: 898  STAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP---LELRLKFGIGFH 954
            +  G  L +   ++ +++    +     S   G LV A+I   K         +      
Sbjct: 1074 TETGFFLTIPVIVAPSKSQDKNKQVSTVSLAQGVLVNAQIKSKKHDCIYLQIQQQSQLSI 1133

Query: 955  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1001
            GR+H  E   D      N F NF++G+TV A+++  S   D KK+F+
Sbjct: 1134 GRLHRIECQTD------NEFKNFQVGETVQAKVLKISQGAD-KKTFI 1173



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--K 1307
            GYV N++  GCFI +  +   +  L+ L+D      ++  P+G+LV  RV+ V+  +  K
Sbjct: 1412 GYVTNISKSGCFIQVGYQSTVRSGLNELNDDSSFDFQENMPLGRLVLCRVVKVDESNGQK 1471

Query: 1308 RVEVTLKTS 1316
            R  VTL+ S
Sbjct: 1472 RFNVTLRRS 1480


>gi|405120627|gb|AFR95397.1| ribosomal RNA processing protein RRP5 [Cryptococcus neoformans var.
            grubii H99]
          Length = 1483

 Score =  223 bits (568), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 109/265 (41%), Positives = 171/265 (64%), Gaps = 3/265 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P +  E+ER + +SPNSSF+WI+YM+F L + ++EKAR I  +AL+ I+ REE EKLN+W
Sbjct: 1205 PSSTAEYERALLASPNSSFLWIQYMSFHLQLHEIEKARRIGRQALEKISYREEEEKLNVW 1264

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            +A  NLE  +G     A  KVF+ A QY D + V++      +   + +  +EL  K++K
Sbjct: 1265 MALINLEIAFGTV--SATEKVFEEAAQYNDKRTVYMRYAEALQVAGKGEALEELFKKIVK 1322

Query: 1655 KFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            KF    + W R  +  L K   E  +A++ R++ SL + KH++ I + A+LEFK+G A+R
Sbjct: 1323 KFSAYPESWTRFAEFYLNKGDVEAARALLPRSMKSLDKSKHVETIEKMALLEFKHGDAER 1382

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
            G+++FEG++  +PKR DLW +Y+DQ  ++GD+  +RGL +RA+   L  KK KFLFKK+L
Sbjct: 1383 GKTLFEGLVDRFPKRLDLWGVYIDQVAKVGDIQGVRGLMDRALEQKLTSKKAKFLFKKWL 1442

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVES 1798
              E+ +G+    +  K +A E+VE+
Sbjct: 1443 TIEQRIGDAAGQDKAKARAREWVEA 1467



 Score =  145 bits (367), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 149/598 (24%), Positives = 274/598 (45%), Gaps = 52/598 (8%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKE--------IGKRKIWLSLRLSLLYKGLSLETVQE-- 98
           L  +F  GQ V   VL L     +            K+   + L+L+ K ++ E  ++  
Sbjct: 188 LAQLFVAGQYVPAKVLTLYPTASQSFISQYPVTETTKLASRVELTLIPKKVNSEVAKKDL 247

Query: 99  --GMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVV 150
             G  L   VKS ED G+I+  GL      S  GF+ ++ +A++     + PG LL   +
Sbjct: 248 ETGYYLVGEVKSEEDKGWIVGVGLDAQDGSSVEGFVSKDEVAKSVPAQALVPGQLLSATI 307

Query: 151 RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 210
            SI    +VV+LS D   +++    ++   ++  ++PG  V+  + +++ +G+ +    +
Sbjct: 308 SSIAAGGRVVHLSLDQQDIARSQISEVS--TVGSILPGHSVNALITAVVPSGLNVKVAGF 365

Query: 211 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF----VDPTSRAVGLTLNPYLLHNRA 266
           F GT+D+ HL       + ++ Y   KK+ AR+++     +P S A  L+  P++L+  +
Sbjct: 366 FDGTIDLAHL--PLGEIDIEDKYKIGKKIRARVIYDNLAANPHSFA--LSALPHVLNFTS 421

Query: 267 PPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 317
           P            + +G +Y   KV RV    G+++    T      +V IS +A+E + 
Sbjct: 422 PIQKGDDTPLELAIPIGKVYQSVKVTRVLNDWGVVV---RTQDGLEGFVHISHLADERIP 478

Query: 318 KLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 374
            L     ++K G+  R R++G   ++G+     + S    L    S++K G  +KG +  
Sbjct: 479 VLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLSQLFMQVSELKIGQQLKGTIRR 538

Query: 375 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHK 432
           +      V   G V  +    H ++  +  P K+FK  A +  RVL ++    R+ +T K
Sbjct: 539 LTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEASVKARVLYLEPTRNRVVLTLK 598

Query: 433 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 492
           KT ++S LA+   + +     +T G + KI   G  V  + G++ F P SE       + 
Sbjct: 599 KTFLESDLAVPQGFDDLKVGELTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTHIKDL 658

Query: 493 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNA 550
           S  ++VG+ +  R+++  P++ RI +S              KL  G  VSG V  V    
Sbjct: 659 SEAFYVGKPLTVRVITVDPSASRIVVSAKQASPTAPATAAEKLEVGEAVSGTVSQVHTEQ 718

Query: 551 VVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD-NESSNLLL 605
           VVV +   G +   +   +L++   H  +  ++  +K G + D L+V+  N  S L++
Sbjct: 719 VVVKLDGNGLT-ALLSLSNLSNQ-RHTGIEELRGSLKEGEKIDDLVVVSKNPVSGLII 774



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 18/243 (7%)

Query: 466 GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
           G  VR  +G++GF   S L    +      +  +  G + + R++   P    + LSF  
Sbjct: 454 GVVVRTQDGLEGFVHISHLADERIPVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQ 513

Query: 523 KP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEH 576
                   +VSE   +K+G  + G +  +T    +++V   G   G +   H AD  L+H
Sbjct: 514 SVLSQLFMQVSE---LKIGQQLKGTIRRLTDK--MLFVNVHGNVDGIVHPTHYADIRLKH 568

Query: 577 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 635
               +   KP      ++L L+   + ++L+ K + + S   +P     +    +  G V
Sbjct: 569 P---QKRFKPEASVKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFDDLKVGELTLGSV 625

Query: 636 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
             I++ G  V     L  F P S+       DLS+ +YVG+ +   ++ V+    RI +S
Sbjct: 626 LKIVDKGVIVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITVDPSASRIVVS 685

Query: 696 LKQ 698
            KQ
Sbjct: 686 AKQ 688



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 131/272 (48%), Gaps = 14/272 (5%)

Query: 92   SLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGIDVKPGLLLQG-- 148
            +++ ++ G ++T  V+     GY++   LP+   G +   + +++  +    G L  G  
Sbjct: 804  AIDAIEVGQIITGTVQEQNSQGYMVQ--LPNNLRGRVHSCDSSDDLALAAGRGPLTVGEE 861

Query: 149  ---VVRSIDRTRKVVYLSSDPDTV-SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
                V +++R+++ + LS+    V  K    D +  ++D L  G  V   V++I  +GV 
Sbjct: 862  VKCYVLAVNRSKRAIDLSTRLSRVEGKENVVDREVNTVDDLKQGESVRGLVKNIAGHGVF 921

Query: 205  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 264
            +S     T  + I  L + +   +W++ +  ++ V+ +IL ++P S ++ +TL      +
Sbjct: 922  VSLGRNVTARIMIKELFDEY-VKDWESRFEINQLVSGKILSINPRSNSIEMTLRKNPSKS 980

Query: 265  RAPPSHVKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLE 320
                + + + D  +  KVV V R     G+ L I  + VS   + + ++D  + +V +  
Sbjct: 981  AKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEVTDNRKADVAQAL 1040

Query: 321  KKYKEGSCVRVRILGFRHLEGLATGILKASAF 352
            K ++EG  V+ +I+     +G  +  +KAS F
Sbjct: 1041 KGFREGDQVKAKIVSIDTEKGKISFGIKASYF 1072


>gi|443686492|gb|ELT89750.1| hypothetical protein CAPTEDRAFT_150563 [Capitella teleta]
          Length = 272

 Score =  223 bits (567), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/265 (46%), Positives = 181/265 (68%), Gaps = 3/265 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P++  EF+RL+  SP+SS VW+ YMA+ L  A+++KAR +AERAL TI+ REE EKLN+W
Sbjct: 7    PQSAAEFDRLLMQSPDSSMVWMAYMAYHLETAEIDKARGVAERALSTISFREEREKLNMW 66

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            VAY NLEN YG    E +  V +RAL Y D KKV+  L  +Y ++E+ + A+E+   ++K
Sbjct: 67   VAYLNLENLYGTT--EQLKAVIERALTYNDHKKVYQQLAKIYVKSEKIQAAEEVHNTLLK 124

Query: 1655 KFKHSCKVWLRR-VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            K+K    VW+   +     QQ E  ++++QR+  SL +  H   I + A +EFK G  ++
Sbjct: 125  KYKAEADVWVDFGLFYYNTQQAESARSLLQRSFKSLDKKIHTDVILKFAQMEFKYGDVEK 184

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
            G++M EG+LS +PKRTDLW+IY+D  +++ D+D  R + +RAI L L  KKMKF+FKKYL
Sbjct: 185  GKTMMEGLLSSFPKRTDLWAIYVDLLVKMQDIDCARQILDRAIHLELNIKKMKFMFKKYL 244

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVES 1798
             +E+  G E+ ++ VK+KAME++ES
Sbjct: 245  SFEEKHGNEQTVKAVKEKAMEFIES 269


>gi|71004318|ref|XP_756825.1| hypothetical protein UM00678.1 [Ustilago maydis 521]
 gi|46095627|gb|EAK80860.1| hypothetical protein UM00678.1 [Ustilago maydis 521]
          Length = 1563

 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/279 (41%), Positives = 176/279 (63%), Gaps = 7/279 (2%)

Query: 1524 AAEERL---LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            A EE L   L   AP +  ++ERL+  SPNSSF+WI++M+F L ++DV++AR IA RAL+
Sbjct: 1268 ALEEDLTADLASKAPESATDYERLLLGSPNSSFLWIQFMSFALQLSDVDRAREIARRALK 1327

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
             IN REE E++N+W+A  NLEN YG+  +E +   F+ A+Q  D   ++L ++ ++E + 
Sbjct: 1328 VINYREEQERMNVWIALLNLENTYGS--DETLDSTFKEAVQANDGFSMYLKMINIFETSS 1385

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFIS 1699
            + + A EL  K   K+    + W+   +  L+  Q +  +A++ RA+ +L + +H   I+
Sbjct: 1386 KTEEAQELFVKAKAKYSVLPEFWIEYARFYLRTDQADAARALLPRAMQALDKREHTSTIT 1445

Query: 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISL 1758
              AI EFK G A+RGR++FEG++  YPKR DLW  YLDQE RL D    +R LFER ++L
Sbjct: 1446 AFAINEFKLGDAERGRTIFEGLVDSYPKRLDLWWQYLDQESRLQDNQAQVRNLFERTMTL 1505

Query: 1759 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
             L  KK K L KK+LEYEK  G+ +  + V  +A  +V+
Sbjct: 1506 KLTAKKGKSLLKKWLEYEKKNGDVKSQQKVLARAKAFVD 1544



 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 147/564 (26%), Positives = 256/564 (45%), Gaps = 61/564 (10%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSLETV 96
           L  +FHVGQ +   V+Q+       G+            R++ LSL   L+  G+S+  +
Sbjct: 232 LSELFHVGQWLVASVVQVHSGDVAKGRPTREGGEYEKESRRVELSLSPHLVNTGVSISDL 291

Query: 97  QEGMVLTAYVKSIEDHGYILHFGLPSFTGF--------LPRNNLAENSGIDVKPGLLLQG 148
             G  L+A + S+EDHGY+L  G+P F GF        LP +  A  +G  ++ G ++  
Sbjct: 292 DVGASLSATISSVEDHGYMLDSGIPEFRGFVGFSDVARLPASFHAGKNGKSLEVGSVVFA 351

Query: 149 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 208
            +  I  +++    + DP TVS    K     SI  ++PG +    V + L  G+ +   
Sbjct: 352 KITKIPESKRSFEATLDPKTVSTSPIKHTP--SITAILPGTLTKVLVTAALPTGLNVKLF 409

Query: 209 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 255
             F  T+D FHL       +  + Y +  K  AR+L+  + P S           R +GL
Sbjct: 410 GMFDATIDRFHLPELPQGKDISDVYKEGSKHVARVLWDLLSPPSTALQSDIPEHERKLGL 469

Query: 256 TLNPYLLHNRAPPSHVK--------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT 307
           +L P +L   AP +  +        +G I  +  VV+     GL++ +  T +    +V 
Sbjct: 470 SLAPQVLALEAPVAKDQQLLQHAYPIGAIL-KVTVVQTINDWGLVVSVHDTDLR--GFVH 526

Query: 308 ISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
           IS V+++ V  L      + + +  + R++G    +      LKAS  E      S+V+ 
Sbjct: 527 ISQVSDDHVVSLPPSSGPFAKETVHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEV 586

Query: 365 GMVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV- 422
           G VV   +I +    AI +Q  G V  +    H ++ ++ +P K++K G  +  RV+ V 
Sbjct: 587 GEVVTANIIKLGLPNAIFLQLQGHVDGVVFSNHFADVKLTQPEKRYKPGLSVKARVMDVD 646

Query: 423 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
               RI +T KK+LVKS L I++S  +A   ++T+  + +++ +   V  + G++   P 
Sbjct: 647 PNRNRIVLTLKKSLVKSDLPIVASMQDARIGVVTNATVFRVQTNSLIVSLFGGLKALVPG 706

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKL 535
            E+  +   +  S +  G+V+K RI         +  S +  L   +    V   D V++
Sbjct: 707 REVSENDFNDVKSSFTEGKVIKIRITEVDYENQKVVGSIKQTLPEYLAKLNV---DAVEV 763

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKG 559
           G  V+G V  V    VV+ ++  G
Sbjct: 764 GDKVTGKVAAVHKEVVVLTLVPTG 787



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 145/676 (21%), Positives = 268/676 (39%), Gaps = 61/676 (9%)

Query: 173  VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL-TYFTGTVDIF-----HLQNTFPT 226
            V KD + +     +  ++  T VQ+I + G+++S   T   G V I      H+ +  P+
Sbjct: 482  VAKDQQLLQHAYPIGAILKVTVVQTINDWGLVVSVHDTDLRGFVHISQVSDDHVVSLPPS 541

Query: 227  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 286
            +        HK   AR++   PT R + L+L   +L  +              + ++++ 
Sbjct: 542  SGPFAKETVHK---ARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVGEVVTANIIKLG 598

Query: 287  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 346
                + L +          V  +  A+ ++ + EK+YK G  V+ R++            
Sbjct: 599  LPNAIFLQLQG---HVDGVVFSNHFADVKLTQPEKRYKPGLSVKARVMDVDPNRNRIVLT 655

Query: 347  LKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 403
            LK S  +    +V +  D + G+V    V  V +   IV   GG+KAL P   +SE +  
Sbjct: 656  LKKSLVKSDLPIVASMQDARIGVVTNATVFRVQTNSLIVSLFGGLKALVPGREVSENDFN 715

Query: 404  KPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 461
                 F  G  +  R+  V  +++++  + K+TL +    +     E  D++   G +  
Sbjct: 716  DVKSSFTEGKVIKIRITEVDYENQKVVGSIKQTLPEYLAKLNVDAVEVGDKVT--GKVAA 773

Query: 462  IEKHGCFVRFY-NGVQGFAPRSELGLDPGCEPS----SMYHVGQVVKCRIMSSIPASRRI 516
            + K    +     GV+     S L             S+    ++    + +  PA   +
Sbjct: 774  VHKEVVVLTLVPTGVRALLSLSVLASMRNTTSQELLESLEEDQEIEDLVVSAKNPAKGIV 833

Query: 517  NLSFMMKPTRVSED--------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
             ++  ++ ++ SED          VK G++V G V +   +  +  V+A G +  T  T 
Sbjct: 834  IVADKVRSSK-SEDVENNGSTSGQVKQGNVVQGRV-IQKNDKYLDCVVALGTA--TRATL 889

Query: 569  HLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLP------SD 621
            H+ D  +  +   S+  PG      +V L +   + ++S + S + ++          S 
Sbjct: 890  HVTDLADDFSRNVSLPSPGQTLQCYIVSLKSNGKSAVISTRPSRVAASDSAEVTDPEISS 949

Query: 622  ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 681
             S +     V G+V  I   G FV    +L       +  D    D    + VGQ V   
Sbjct: 950  ISDLAKGQKVRGFVKAITNVGLFVTVGRKLDARVQVRELFDEFVRDWKTRFTVGQVVSGT 1009

Query: 682  ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 741
            I+D N     I +SLK     ST  S        EE+ A+L + K      K +  F +G
Sbjct: 1010 IMDTNVHNNEIEMSLK-----STPGSIKPRAERAEER-ALLDAKKRP----KRLADFKVG 1059

Query: 742  SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVA 794
              ++G V     FGV V   E ++V G    ++L+    +        G  ++A +L + 
Sbjct: 1060 DKVKGFVKNIIGFGVFVQI-EGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRIN 1118

Query: 795  KAERLVDLSLKTVFID 810
            + ++ +   LK  + D
Sbjct: 1119 EEKKKISFGLKPSYFD 1134



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 615  AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYY 673
            A++ P   +       V G+V NII  G FV+  G  ++G A  ++  DG+  +  K + 
Sbjct: 1046 AKKRPKRLADFKVGDKVKGFVKNIIGFGVFVQIEGTNVSGLAHMNELSDGKADEALKAFR 1105

Query: 674  VGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            VG  VR+ +L +N E  +I+  LK S   + D
Sbjct: 1106 VGDKVRAIVLRINEEKKKISFGLKPSYFDAAD 1137


>gi|400596283|gb|EJP64059.1| S1 RNA binding domain-containing protein [Beauveria bassiana ARSEF
            2860]
          Length = 1796

 Score =  220 bits (561), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 304/1233 (24%), Positives = 529/1233 (42%), Gaps = 107/1233 (8%)

Query: 51   TIFHVGQLVSCIVLQLDDDK-KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
            TIF +GQ V   V+   +      GKRKI LSLR +    GL+ + V     + A V S+
Sbjct: 201  TIFEIGQFVRAYVVSTTEGAVAGKGKRKIELSLRPTEANTGLTKDDVVPQCTVVAAVASV 260

Query: 110  EDHGYILHFGLPSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            EDHG I+  G+   +GFLP   +  N     ++ G +    V +   + KV  L+   D 
Sbjct: 261  EDHGCIMDLGIDGLSGFLPNAEVDTNMKRQRLQEGAVFLCQVTAKKGSGKVAQLTLKQDK 320

Query: 169  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
            +        +  +I+  +PG  VS  V     +G+    + +   T D+ H       T+
Sbjct: 321  IGNVKNYPAEATTINTFLPGTAVSVLVTGNSNSGLSGKIMGHVDATADLIHSGIGPFGTD 380

Query: 229  WKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL-----HNRAP-----PSHV-KVGD 275
             ++ Y    K+ ARI+   PT+++  +G+TL P+L      H   P     P  V  +  
Sbjct: 381  VESKYKIGSKIKARIICNFPTAKSPKLGITLLPHLTALTKKHPEGPKRSSLPLQVLPIAS 440

Query: 276  IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVR 332
            I +Q  V   +  +GL +D+    +    +V IS V + +V  L K    Y+ GS  + R
Sbjct: 441  IVEQCTVRHAEADMGLFVDVGVPGLC--GFVHISRVKDGKVDSLYKSSGPYQVGSTHKGR 498

Query: 333  ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGG 387
            I+G+  ++G+     + S        H DV  G V+  ++    I  D   G ++    G
Sbjct: 499  IVGYSEIDGVFHLSFQKSILSQTYIRHEDVPVGTVLTCEIEKLLINEDGVNGLVLNIAEG 558

Query: 388  VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSS 445
            +    P  H+S+ ++  P KKF+ G ++  RVL   +  K I +T KKTLV S+  I+++
Sbjct: 559  ITGFVPERHLSDVKLQHPEKKFRQGMKIKARVLSNDLIKKSIRLTLKKTLVNSETPIITN 618

Query: 446  YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 505
            Y +        G I K+E+ G  ++FY  ++GF P SE+      +PS  + VGQVV   
Sbjct: 619  YDDVKVGSQALGTIIKLERSGARIQFYGELRGFLPISEMSEAYIRDPSEHFRVGQVVSVH 678

Query: 506  IMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 559
            ++   P SRR+ +S      F ++     +   + LG +VS  V   T + V V  +   
Sbjct: 679  VLDVDPESRRLVVSCKDPGAFGLEKQNALKK--LSLGDVVSAKVTQKTEDQVFVE-LEGS 735

Query: 560  YSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESS--NLLLSAKYSLINSA 615
              K  +P  HL D    ++   +K V   G     L+VLD      +++LS K SL+ +A
Sbjct: 736  LLKAILPVGHLTDKSASKNQFALKKV-SAGQTLPNLVVLDKHEGRRSVILSQKPSLVEAA 794

Query: 616  QQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 673
            ++  L          SV  G+V NI  T  FV+F G L    P+++     +A      +
Sbjct: 795  KEGKLLKSFEQAKQGSVFAGFVRNITLTAVFVQFAGSLHALLPKARLAPEAQAKPDFGLH 854

Query: 674  VGQSVRSNILDVNSETGRITLSLKQSCC-SSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 732
               S+   ++    +  RI ++   +           +      + +A    +K   + +
Sbjct: 855  KNDSIEVRVVSTIPDLSRIMVAPSSAPVDQDVAGKSKKAKAAPADDLAFGSITKAKVTSI 914

Query: 733  KWVE--GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAI 790
            K  +    I+   ++G++  SN F          D +  I   +   AT   G  ++  +
Sbjct: 915  KETQLNVQIVDYNVQGRIDISNVF----------DKWDDIADPKHPLATFHKGQELRVRV 964

Query: 791  LDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVNAIVEIV 847
            + V  AK  R + +S ++       E  + +   +  R +E + D L V Q+  A V  +
Sbjct: 965  VGVHDAKDHRFLPISHRSAH--SILELTARQTDLETDRLKELTVDSLKVGQSHIAFVNNL 1022

Query: 848  KENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMAL-PSSSTAGRLL 904
             + YL ++L P     I     SD  +Q    +  F  G ++   V ++ P +S      
Sbjct: 1023 TQQYLWVNLSPSVRGRISALEASDDLSQLNDLEGNFPAGSALRVRVTSVNPENSH----- 1077

Query: 905  LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
            L L A     +SSSK      S     ++  +IT++   ++ +KF     G +H+ ++ D
Sbjct: 1078 LDLSA----RSSSSKDTVTWDSIKANMVLPGKITKVNERQILVKFSESVSGPVHLPDMAD 1133

Query: 965  DKSNVVENLFSNFKIGQTVTARI--IAKSNKPDMKKSFLWELSIKPS--MLTVSEIGSKL 1020
               N  E   + ++ G  +   +  + KSNK          LSI+PS  M +   I  + 
Sbjct: 1134 ---NFDEVNTTQYRKGGIIRVSVVDVDKSNK-------RLRLSIRPSRIMSSTLPIKDQE 1183

Query: 1021 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1080
            +     +S G  V G+V  V ++   + +   + A + I  S      L+E++ +F I +
Sbjct: 1184 ISSFAQLSSGDIVRGFVKNVTDKGLFVLLGGPVSALVKI--SNLSDRYLKEWKDQFQIDQ 1241

Query: 1081 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1140
             V G +++I+   K L + L+     + D+  D +       +  G +V G++ K+    
Sbjct: 1242 MVKGRIIAIDNATKQLEMSLK---SSVVDE--DYTPPVTYKDLAVGQVVTGKVRKVEEFG 1296

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
              ++V    ++ G  H +++    V            D    Y EG  VK  VLE+    
Sbjct: 1297 AFILVDNSANVSGLCHRSQIAEKPVQ-----------DATKLYKEGDAVKAMVLEVDVQK 1345

Query: 1201 RG-TFHVELSLRSSLD-GMSSTNSSDLSTDVDT 1231
            R  +F ++ SL    D  M S N + L    D+
Sbjct: 1346 RKISFGLKPSLFEDEDTDMESDNGAALDGQDDS 1378



 Score =  184 bits (466), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 169/293 (57%), Gaps = 18/293 (6%)

Query: 1521 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            EI   +   L+ + P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR +AERA++
Sbjct: 1489 EIEVDKTAELDTNGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREVAERAIR 1548

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
            TINIREE EKLN+WVAY NLE  YG   +  V +VF+RA QY DP+++H  L  +Y ++ 
Sbjct: 1549 TINIREETEKLNVWVAYLNLEVAYGT--KTTVEEVFKRACQYNDPQEIHERLASIYIQSG 1606

Query: 1641 QNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKF 1697
            + K A+ L   M+KKF   +  VW+     L   +      +A++ RA   L   + +  
Sbjct: 1607 KLKEAEALFEAMVKKFGAKAPSVWMNYAHFLHVTRNDPARARALLPRASQQLGAAQAVTI 1666

Query: 1698 ISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL---------GDVD 1746
            + + A LEF   NG  +RGR+MF G+L  +PK+ DLW+  LD E+ +          D  
Sbjct: 1667 VPRFAALEFHSPNGEPERGRTMFAGLLDTWPKKGDLWNQLLDLEMGILAGAGGTAAADPT 1726

Query: 1747 LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             +R +FER   +  L P++ +  F+++  +E+ +  + + + V  KA E+  +
Sbjct: 1727 AVRDVFERRTRVKGLKPQQAEKWFRRWTTFEEGIDAKSKAK-VTAKAHEWAAA 1778


>gi|221486401|gb|EEE24662.1| programmed cell death protein, putative [Toxoplasma gondii GT1]
          Length = 497

 Score =  220 bits (560), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 116/274 (42%), Positives = 171/274 (62%), Gaps = 14/274 (5%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            PR+P++FERLV  + NS+ VWI YMA+ L + +++ AR IAERA+Q IN REE E+ ++W
Sbjct: 219  PRSPEDFERLVLVNGNSAAVWISYMAYYLKLNELQLARQIAERAVQHINYREEQERSSVW 278

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            +AY NLE  YG+     V  VF+RA+QY D KK+H  +  +YE+  Q   A ++  K  +
Sbjct: 279  IAYLNLECVYGD----RVDDVFRRAIQYNDSKKIHYQMTFIYEKARQLDKARQMCEKCCE 334

Query: 1655 KFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            KF  S K+W+R +  L          + ++ +AL  LPR KHI+F++  A LE+K+   +
Sbjct: 335  KFPESQKMWVRHLTLLYTALDAASAARDLMLQALFRLPRRKHIEFVATCARLEYKHASKE 394

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRL--------GDVDLIRGLFERAISLSLPPKK 1764
            RG++ FE +L+E+PKRTD+WS Y+D  I           ++  IR LFER  SL L  +K
Sbjct: 395  RGQTFFEKLLAEHPKRTDIWSQYVDAHIAAHTPPRCVPANLQSIRVLFERTTSLQLKLRK 454

Query: 1765 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            MKF F ++L++EK  G  E    V+ KA E+V+S
Sbjct: 455  MKFFFTRWLDFEKQHGTAETQARVRAKAREFVQS 488


>gi|328784871|ref|XP_394740.4| PREDICTED: protein RRP5 homolog isoform 1 [Apis mellifera]
          Length = 402

 Score =  220 bits (560), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 108/264 (40%), Positives = 177/264 (67%), Gaps = 3/264 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P + D+F+RLV + PNSS +W++YMA+ L   ++EKAR++A RA++TIN REE+EKLN+W
Sbjct: 134  PNSVDQFDRLVLARPNSSIIWLQYMAYYLQTTEIEKARAVARRAVKTINFREESEKLNVW 193

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
             A+ NLE+++G    E++  VFQ A++  D  K++  +L ++    +    ++ +  +I 
Sbjct: 194  NAWLNLESKFGTS--ESLNDVFQEAVRSNDSLKIYSHMLIVHVEAGRQIELEKTINTIIG 251

Query: 1655 KFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            KFK   ++W+   + LLK   ++  + ++QRAL SLP  +H+  + + AI+E K G  +R
Sbjct: 252  KFKQIPEIWINCGEALLKIGLKDKSRHIMQRALQSLPASEHVNLMVRFAIMENKFGDKER 311

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
             +++FE ILS YPKR D+WS Y+D  I+  D+D+ R + ER +  +LPP+KMK LFKK++
Sbjct: 312  SQTLFEQILSSYPKRVDIWSCYVDSLIKSNDIDIARRVLERTVIQTLPPRKMKILFKKFI 371

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVE 1797
             +E+  G +E + +V+Q A EYVE
Sbjct: 372  NFEEQYGTQESVNHVQQMAAEYVE 395


>gi|242004044|ref|XP_002422951.1| programmed cell death protein, putative [Pediculus humanus corporis]
 gi|212505867|gb|EEB10213.1| programmed cell death protein, putative [Pediculus humanus corporis]
          Length = 1410

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/282 (41%), Positives = 178/282 (63%), Gaps = 15/282 (5%)

Query: 1519 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1577
            EQ +R  EE+L++ D  P T D+F+R V ++P+SS  W+KYMAF +   ++E AR++A R
Sbjct: 1134 EQRLRYIEEKLMDPDREPETIDDFDRSVLANPDSSATWLKYMAFHIQNTEIEAARTVARR 1193

Query: 1578 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1637
            AL+ I+ R+E EKLNIW+A  NLEN YG   E+++ K+   ALQY DP K+HL +L LY 
Sbjct: 1194 ALKAISFRKEQEKLNIWIALLNLENLYG--CEQSLNKILTEALQYNDPYKIHLHMLNLYG 1251

Query: 1638 RTEQNKLADELLYKMIKKFKHSCKVWLR-RVQRLLKQQQEGVQAVVQRALLSLPRHKHIK 1696
            +T   +  ++L   M+KK+K    +W    +      + E  + V+QRAL  L + +HI 
Sbjct: 1252 QTNNYQEMEKLGNFMLKKYKDVENLWYDVGLAYFTVGKIESARFVLQRALTILNKKQHIL 1311

Query: 1697 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1756
             +S+ A LE K G  +R ++++E IL  +PKR D+WS Y+D ++            ERA 
Sbjct: 1312 LLSKFAHLENKYGSPERAQTLYESILGSFPKRVDIWSCYVDIQV-----------LERAT 1360

Query: 1757 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            S SL P+KMK LFKK+L +E++ G  E +E V++ A+EYVE+
Sbjct: 1361 SQSLRPRKMKTLFKKFLTFEENHGTPENVEKVREAAVEYVET 1402



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 137/618 (22%), Positives = 270/618 (43%), Gaps = 39/618 (6%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNLLPTIFHVGQ 57
           M L G+V++V++K + + LPG LRG   +   ++    ++ N    +E   L  IF  G 
Sbjct: 66  MILLGIVSDVSDKIVNVSLPGSLRGVITIPNVSEFYTSLIQNMSSQSEVLGLTEIFQPGD 125

Query: 58  LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 117
           ++   +L + ++ K +      ++    ++   LS + + + ++LT  VKS EDHG+I+ 
Sbjct: 126 ILPVKILSVSEESKSL-----MVTSDPKMINSNLSYDAIDKDLILTGNVKSKEDHGFIID 180

Query: 118 FGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT--RKVVYLSSDPDTVSKCVTK 175
           FG+    GFL  + + E+   ++K G +++  V S  ++     V LS+      K   K
Sbjct: 181 FGIDKVLGFLKFDKVKEDG--ELKVGQIIRSSVISCLKSPGSCSVQLSTLKTDFEKAYIK 238

Query: 176 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF--HLQNTFPTTNWKNDY 233
               +S+  LVPG      V  +L NGV + +         I+  +L   FP     N  
Sbjct: 239 LNSSVSLSFLVPGFQFQVVVTKVLLNGVEVKYGNDVNKKGFIYEDNLPMKFPNLEKVNVG 298

Query: 234 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL 293
            ++    A +L+V P    +   + P     +      K GDI    KVV+  R  GL++
Sbjct: 299 TEYI---ATLLYVKPLVNVLYFKVLP----KKKIEWPFKFGDIV-SGKVVKARRS-GLVV 349

Query: 294 DIPSTPVSTPAYVTISDVAE-----EEVRKLEKKYKEGSCV-RVRILGFRHLEGLATGIL 347
            I         ++ IS +       E  + +E  Y     + ++R+    +++    G  
Sbjct: 350 KIVKGINVARCFIPISKLKNNKKILENDKSIETLYPVNKKIPQIRLGSRNYMKRQYLGAT 409

Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
             ++ +   F+ +D+K G ++  K+++   +   ++    +        +++  +  P  
Sbjct: 410 DKASLQEKYFSVTDLKCGEIISAKILSFSKYSVKLKIGQSILGTVAFNDLTDVPLKNPSL 469

Query: 408 KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 467
           +FKVG ++    +  +SK + +T K +L+K K  ++    E     +  G I+++     
Sbjct: 470 RFKVGQQVT--EINPESKFVRLTMKPSLIKEKNILMDLNFEKNHFYL--GVISRVLHGKL 525

Query: 468 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 527
            V+F+NGV G  P+       G    + +  G ++KC  ++    ++ +    +   +  
Sbjct: 526 IVKFFNGVIGILPKRFTNHLDGGSLKTYFAEGHLIKCCPINVTSENKLL----LSLLSST 581

Query: 528 SEDDLVKLGSLVSGVVDVVTPNAVV--VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 585
              DL+K+G   +  V   T N  +  V V  K   +G +P + L+ H    T + S   
Sbjct: 582 EGSDLLKVGKKYNVTVVNKTENGFLLDVQVNKKKTCQGYLPKQLLSVHQNLTTPLLSTYF 641

Query: 586 PGYEFDQLLVLDNESSNL 603
           P  +F    V  +E++ L
Sbjct: 642 PNEKFSAYCVFASETNGL 659



 Score = 45.1 bits (105), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 30/198 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF------------EIVKPGK 407
           S V+ GM++ G V  V      V  PG ++ +  +P++SEF            E++   +
Sbjct: 60  SLVQEGMILLGIVSDVSDKIVNVSLPGSLRGVITIPNVSEFYTSLIQNMSSQSEVLGLTE 119

Query: 408 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 465
            F+ G  L  ++L V  +SK + VT    ++ S L    SY      LI  G +   E H
Sbjct: 120 IFQPGDILPVKILSVSEESKSLMVTSDPKMINSNL----SYDAIDKDLILTGNVKSKEDH 175

Query: 466 GCFVRF-YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI--PASRRINLSFMM 522
           G  + F  + V GF     L  D   E   +  VGQ+++  ++S +  P S  + LS + 
Sbjct: 176 GFIIDFGIDKVLGF-----LKFDKVKEDGEL-KVGQIIRSSVISCLKSPGSCSVQLSTLK 229

Query: 523 KPTRVSEDDLVKLGSLVS 540
                 E   +KL S VS
Sbjct: 230 TDF---EKAYIKLNSSVS 244


>gi|294941146|ref|XP_002783028.1| programmed cell death protein, putative [Perkinsus marinus ATCC
            50983]
 gi|239895225|gb|EER14824.1| programmed cell death protein, putative [Perkinsus marinus ATCC
            50983]
          Length = 1786

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/285 (39%), Positives = 174/285 (61%), Gaps = 20/285 (7%)

Query: 1532 KDAPRTPDEFERLVRSS---------PNSSFVWIKYMAFMLSMADVEKARSIAERAL-QT 1581
            K  PR PD+FERLV  S         P++S VWI+YM + + +A++++AR  AER + Q 
Sbjct: 1484 KRNPRGPDDFERLVLMSCSASSTPDMPSASEVWIQYMGYWMQLAEIQRARECAERGIKQR 1543

Query: 1582 INIREENEKLNIWVAYFNLENEY---GNPPEEAVVKV---FQRALQYCDPKKVHLALLGL 1635
            +  R+E ++LN+W+AY NLE      G   ++A+ +V   F+RA  Y D KKVH+A+  +
Sbjct: 1544 LGFRDEQDRLNLWIAYLNLEAHICVEGGRKKDALKRVEDLFKRAASYNDSKKVHMAMCDV 1603

Query: 1636 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHK 1693
            + R     LA E   +  +KF HS KVW++ ++ L    +  E  Q  + RAL    R K
Sbjct: 1604 WARAGAEDLALEAYKRTAEKFGHSKKVWMKYLEFLYSTGKLSEARQNCLPRALRLTDRRK 1663

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG--DVDLIRGL 1751
            H    ++ A LE+K G  +RG+++FE +L+  PKR D+WS+YLD+ I     D D +R +
Sbjct: 1664 HSLIATRAAKLEYKYGTVERGKTIFESLLASQPKRLDIWSVYLDEHINANKEDADQVRSV 1723

Query: 1752 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            F+RA++L L P KMKF FK+++ +E+S G+ + ++ VK KA EYV
Sbjct: 1724 FDRAVTLKLKPAKMKFFFKRWVNFEQSYGDVDHLDLVKDKAREYV 1768



 Score =  106 bits (265), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 195/787 (24%), Positives = 323/787 (41%), Gaps = 117/787 (14%)

Query: 53  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 112
           F  GQLV+  V+  D   +E     I LSL  S+L  GL+ +T++  M L A V + E H
Sbjct: 112 FRRGQLVTAAVIANDGSGRE---GSIQLSLLPSVLNAGLTSKTMKPHMWLPATVLTEEAH 168

Query: 113 GYILHFGLPSFTGFLPRNNL-AENSGIDVKPGL--LLQGVVRSID-------RTRKVVY- 161
           GY+L FG+   TGFL ++ L A    ++   G+  LL+   R  D       R   +VY 
Sbjct: 169 GYVLSFGIDGVTGFLKKSELPAPTDKVETTKGVNPLLEMSARDNDAPEAEQMRLGTLVYV 228

Query: 162 --LSSDPD--TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 217
             L +DP   T  +C  K       D +        +  S    G+ + F+    G V  
Sbjct: 229 RVLDNDPSNKTSLQCSAKAGNVEESDRI----GAPKKKASKKSAGIQVDFMGPLKGVVHQ 284

Query: 218 FHL-------QNTFPTTNWKNDYNQHKKVNARILFV--DPTS--RAVGLTLNPYLLHNRA 266
            HL        +   TTN K      + V AR+L V  DP+S  RAV LTL P L+  + 
Sbjct: 285 HHLLHPILNDTDVTMTTNLK----VGQSVTARVLAVLADPSSHTRAVYLTLLPNLIQWKG 340

Query: 267 PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE- 325
             S V+ G   + ++V+ V             P     +V   ++      +    Y++ 
Sbjct: 341 IKSQVEAGTTIEAARVIDV------------IPKDCTRFVAGGNLMVAHATRCSLPYRQP 388

Query: 326 ---GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA--VDSFGA 380
              G    VR LG   LE       +       V     V  GMV    VI    +  G 
Sbjct: 389 GAVGKKTDVRALGSNLLEMSVQVSAEEKVLAASVVNLQQVSAGMVFDKAVIEHFDNEKGL 448

Query: 381 IVQFPGGVKALCPLPHMSEFEIVK--PGKKFKVGAELVFRVLGVKS--KRITVTHKKTLV 436
           IV     V    P    ++    +  P +  +  AE+  RVL V    +++T+T KK+LV
Sbjct: 449 IVSLSDFVTGRVPKEQCTDQGNQRKLPKRYAEEKAEIRVRVLNVDPVRRQVTLTAKKSLV 508

Query: 437 K------SKLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNGVQGFAPRSELGLDPG 489
                   +  I ++ A   D ++  G+++KI  H GC V+F+    G  P     +  G
Sbjct: 509 GRPDEEVPRALIRNADASVGDVVV--GYVSKILDHGGCIVKFFGEAFGLLPI----VTEG 562

Query: 490 CEPSSMYHVGQVVKCRIMS--SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS----GVV 543
           C      H G +VK R++S    P   R+ L  +      +  ++ K+G +++       
Sbjct: 563 CA-----HEGALVKVRVVSKNDSPKGTRLRLQQVNSMEDSTMGEITKVGDVLTVETIEGA 617

Query: 544 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMKSVIKP----GYEFDQLLV--L 596
           D  +     V +   G +   +P   LAD  + A  VM+ V K      +   ++LV  +
Sbjct: 618 DKCSGGRQCVKIRCVGGTDVLVPVMQLADDPDMAVAVMERVEKKEDLQHFPLAKVLVTAV 677

Query: 597 DNESS-------NLLLSAKYS--LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
            N+ +        L+   KY   L  S +++P   S +     + G+V N+   G FVR 
Sbjct: 678 MNDGTVEGTCKPVLVEDEKYRELLGISQEEIP---SKVKVGEGLVGFVSNVTTFGAFVR- 733

Query: 648 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DVNSETGRITLSLKQSCCSSTDA 706
           +G +TG  P+ K  +G   ++S+   VGQ+V + ++  V++E     + ++    ++   
Sbjct: 734 VGGVTGLVPKPKLAEGFVEEVSEAVEVGQTVTTAVVSSVDAERNMFKMDMQPRAVAAVSE 793

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII---GSVIEGKVHESNDFGVVVSFEEH 763
              +E      K+ +           KW+    I   G V++ KV +   +G ++   + 
Sbjct: 794 LSAREELRAAAKLRL----------EKWLGSGRIPQRGQVVDAKVGKKKPYGWMLELTKF 843

Query: 764 SDVYGFI 770
               G +
Sbjct: 844 EAAAGLL 850


>gi|71032245|ref|XP_765764.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352721|gb|EAN33481.1| hypothetical protein TP01_0237 [Theileria parva]
          Length = 382

 Score =  218 bits (555), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 138/377 (36%), Positives = 211/377 (55%), Gaps = 26/377 (6%)

Query: 1441 ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1500
            EN  +AV++       G + +  +I  R      +  L+ + P++ N    N+   D  K
Sbjct: 4    ENPLIAVKNDHKGKNSGRNKMKNKIPDRNKKINKKSQLNGKNPNLSNEKVNNKEEKD-GK 62

Query: 1501 TIDEKN----NRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSF 1553
              ++K+    N +   K + E E +IR  E+R+ +K+  R P+   +FERLV ++  SS 
Sbjct: 63   PRNKKDKKGINLNIDSKLEYENEIKIRELEDRIADKEWMRNPNSVMDFERLVVTNARSSA 122

Query: 1554 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613
            VWI YMAF ++  D+E AR   +R L+ I+ RE  EK+N+WVAY N+E  YGN     V+
Sbjct: 123  VWIAYMAFYINSGDIEMARKTVKRGLKAIDFREMVEKMNLWVAYLNMECIYGN----NVM 178

Query: 1614 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1673
            ++F +A QY D K +HL ++ ++    Q   A E+  K IKKF  S KVWL  + RLL +
Sbjct: 179  EIFNQATQYNDSKSIHLKMINIFVNNNQLDKAKEICEKAIKKFHKSKKVWLAYL-RLLYE 237

Query: 1674 QQEGVQAVVQ---RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1730
              +  +A  Q     +  +P  K I   S TA+LE+K+G  + G+  FE IL + PKR D
Sbjct: 238  NMKDFEAGRQLHKTCITRIPEKKRINITSSTALLEYKHGSPEMGKMYFENILLDNPKRMD 297

Query: 1731 LWSIYLDQEIRLG----------DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG 1780
            +W+ YL   I+L            +  +R LF+RAI+L L PKKMK +F K+LE+E + G
Sbjct: 298  IWNQYLTAHIKLNMDESKTQKSEGLKNVRNLFDRAITLDLKPKKMKIIFSKWLEFECAYG 357

Query: 1781 EEERIEYVKQKAMEYVE 1797
             E+  E V++KA++YVE
Sbjct: 358  TEKSKESVQKKALKYVE 374


>gi|340386400|ref|XP_003391696.1| PREDICTED: protein RRP5 homolog [Amphimedon queenslandica]
          Length = 267

 Score =  218 bits (555), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 177/259 (68%), Gaps = 3/259 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P++ D+F+RL+ ++PNSS +W++YMAF L  A+V+KAR+ AER L  I+ REE+EKLN+W
Sbjct: 7    PQSADDFDRLLVANPNSSSLWLQYMAFYLHTAEVDKARATAERGLAAISFREEDEKLNLW 66

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            V + NLEN YG+   E++ +VF+RALQ  D  +++  L+ ++  + + + AD+L   M K
Sbjct: 67   VGFLNLENMYGDS--ESLDQVFKRALQQNDQFEIYTRLIDIHVTSNKPEYADQLYQIMCK 124

Query: 1655 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            KF  + +VW +  + L++Q + +  + ++QR+  SL + +HI    Q A  EFK G  +R
Sbjct: 125  KFSSNIQVWSQYGRFLMEQGKADLARKILQRSFKSLTKKQHIDITKQFAQFEFKYGEMER 184

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
            G ++FE ++S YP++ D+WS+Y+D   + G++D +R +FERA+SL L   K +FL+K+Y+
Sbjct: 185  GCTLFENLVSSYPRKVDIWSVYIDMLTKKGEMDRVRDVFERAVSLKLSSVKKQFLYKRYI 244

Query: 1774 EYEKSVGEEERIEYVKQKA 1792
            E+E+  G +  +E V+ K+
Sbjct: 245  EFERKHGTQSLVETVQAKS 263


>gi|326532510|dbj|BAK05184.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 301

 Score =  218 bits (554), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 105/187 (56%), Positives = 142/187 (75%), Gaps = 2/187 (1%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
           V +G++VSGVV+ VTP AVVV V   G+SKG+I  EHLAD+      +K+++KPG+EF+Q
Sbjct: 102 VPVGTIVSGVVERVTPEAVVVSV--NGFSKGSILNEHLADYHGQTVRLKNLLKPGHEFNQ 159

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           LLVLD +  NL+LSAK+SLIN+   +PS+ S I    +VHGY+CNII+ GCFVRFLG LT
Sbjct: 160 LLVLDAKGQNLILSAKHSLINTRNDIPSELSQIQAGVIVHGYICNIIDGGCFVRFLGHLT 219

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 712
           GF+P+ KAVD     LS  ++VGQSVRS++L+VN E+ R+ LSL+ S CSS D SF+Q +
Sbjct: 220 GFSPKDKAVDRPIEKLSDAFFVGQSVRSHVLNVNEESSRVKLSLQHSKCSSADCSFIQGY 279

Query: 713 FLLEEKI 719
           FLL++K+
Sbjct: 280 FLLDQKV 286



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE--------IVKPGKKF 409
           T++ V  G +V G V  V     +V   G  K      H++++         ++KPG +F
Sbjct: 98  TNTSVPVGTIVSGVVERVTPEAVVVSVNGFSKGSILNEHLADYHGQTVRLKNLLKPGHEF 157

Query: 410 KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 469
               +L+  VL  K + + ++ K +L+ ++  I S  ++    +I HG+I  I   GCFV
Sbjct: 158 N---QLL--VLDAKGQNLILSAKHSLINTRNDIPSELSQIQAGVIVHGYICNIIDGGCFV 212

Query: 470 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
           RF   + GF+P+ +    P  + S  + VGQ V+  +++    S R+ LS  
Sbjct: 213 RFLGHLTGFSPKDKAVDRPIEKLSDAFFVGQSVRSHVLNVNEESSRVKLSLQ 264


>gi|324500113|gb|ADY40064.1| Protein RRP5 [Ascaris suum]
          Length = 1854

 Score =  216 bits (551), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 104/265 (39%), Positives = 177/265 (66%), Gaps = 4/265 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P + +EF+RL+  SPNSS +WI+Y++F +S  +++KAR+IAERAL  IN REE+E  NIW
Sbjct: 1584 PTSQEEFDRLLTGSPNSSHLWIRYISFFVSEKNIDKARAIAERALNVINFREEDEIFNIW 1643

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
             AY NLE  +G    E++  +F+RA+  CD  K++  ++ +Y+   + + AD LL +M+K
Sbjct: 1644 TAYLNLELSFGTA--ESLRAIFERAISNCDALKMYKQMVRVYQNVHKIEEADTLLEEMLK 1701

Query: 1655 KFKH-SCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            KF+     VW    Q L++ ++ +  + ++++A  SLP+  H+  IS+ A +E+K G ++
Sbjct: 1702 KFRQEDLDVWFIFGQHLMQTKRFDKARELLKKATKSLPQKHHVMVISRFAQMEYKFGDSE 1761

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
            +G+++FE ILS YP++ D+WS+Y+D  I+   ++  R +FER  S++L    M+  FKK+
Sbjct: 1762 QGKTLFESILSAYPRKADVWSVYVDMLIKSNKINEARQVFERVTSINLGTHNMRTFFKKW 1821

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVE 1797
            L+ E+  G EE+ + VK++A+ Y+E
Sbjct: 1822 LDMEQKHGSEEQQKLVKERAVHYIE 1846



 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 225/1039 (21%), Positives = 415/1039 (39%), Gaps = 148/1039 (14%)

Query: 49   LPTIFHVGQLVSCIVLQL-----DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 103
            L  +F  GQ+++  VL+         +K+ G R+  ++   S++   L   ++  G+VL 
Sbjct: 114  LADVFVPGQMIAYKVLRAATATDSKGRKQGGTRRAVVTCCPSVVNAHLMPSSLLNGLVLN 173

Query: 104  AYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID--VKPGLLLQGV--VRSIDRTR 157
              V+S+ED G I+ FGL S    GFLP   L + + ++  ++  +LL  +  + ++ +  
Sbjct: 174  GSVESVEDKGVIISFGLRSCELRGFLPSAALPQYANMETLIRGQVLLIRIQHLSAVGKVG 233

Query: 158  KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 217
            +V+ +S+ P+ V     + ++ + +++L+PG ++         +GV +       G +  
Sbjct: 234  RVINVSAIPE-VENLDERVVQKLHLNMLMPGTILQAEPIQSAPHGVYVELGNGVKGFIRK 292

Query: 218  FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-----VK 272
             HL    P    ++     + + A ++F    S+ + L+ +P ++    P        + 
Sbjct: 293  QHL----PPRLRRDLSKLVRSIRAVVMFCQQNSQMLVLSAHPDIIALSKPQKRNTFEGIA 348

Query: 273  VGDIYDQSKVVRVDR----GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 328
            +GD     +V  VDR       L+LD         AY T S +     +     YK GS 
Sbjct: 349  IGDKV-LCEVNEVDRYGNVHFDLILDNAPKGSLVSAYATKSHLQSANEKD---AYKPGSV 404

Query: 329  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 388
             +VR++ +R +E       K   F   + +  D  PG  ++ K+ ++ + G  ++    +
Sbjct: 405  HQVRVISYRLIERQLVVSNKREIFVQKMVSLVDAVPGEKIRAKIESIKANGLGMKVYDRI 464

Query: 389  KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSY 446
             A  P+ H+++ +  +  K +  G  L  R+L   +  +R+ +T K +L+ +   ++  Y
Sbjct: 465  SAFIPIAHVADKQFTRIEKHYSKGQMLDCRILEADALKRRLILTSKPSLLNTSYKLIKDY 524

Query: 447  AEATDRLITHGWI-TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV-VKC 504
            +      +T G++  K E  G  + FY GV+ +             P     +G+V + C
Sbjct: 525  SAENVGAVTLGYVRAKHENGGLLIGFYGGVRAYM-----------FPKEAARLGEVKLGC 573

Query: 505  RI---MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG------VVDVVTPNAVVVYV 555
             +   + S+   R+  L  +  P+  S+  +++  + + G          VT N+ VV  
Sbjct: 574  TVQVNVQSVDVERQRMLVAVADPSLTSDTAILRSNAFMEGKDVPLCYSATVTGNSQVVTG 633

Query: 556  IAKGYS-----------KGTIPT----EHLADHLEH-ATVMKSVIKPGYEFDQLLVLDNE 599
              +G              GT+ T    E L+D L+     +    K G +  Q+ VL  +
Sbjct: 634  TKQGQRIDLSVHLGKKLGGTVQTSMALELLSDTLDPLVDTLTDCFKIGSKIPQVTVLSEK 693

Query: 600  SSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHG-YVCNII-----ETGCFVRFLGRLT 652
            +  + +S+K  LI+  ++ P     IH  + +  G  VC  +     E G FV   G   
Sbjct: 694  AGIIKVSSKRFLIDWLERHPP----IHSIDDLSKGLLVCGTVTQRHSEMGYFVELAGGSA 749

Query: 653  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 712
              AP    VD    D      VGQ+V + +  ++ E  R +L L    C   D     E+
Sbjct: 750  LVAPARFIVDSTEEDPQNEVQVGQTVLARVSSLDVERKRFSLILNPPLCCELDDG---EN 806

Query: 713  F------LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE----- 761
            +      LLE  IA          + +W    + G      +  S D  +VV        
Sbjct: 807  WCSLGLRLLEYTIA----------DWEWCAANLEGGKELPSLGASVDVTLVVPLNDALTV 856

Query: 762  EHSD--VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            E SD  + G+             G  ++A +LDVA    L    L+    D  +E  S  
Sbjct: 857  EWSDQKLRGYARKGNFPERKYTKGETLKALLLDVA----LPSCELEFYIFDEDKE--STL 910

Query: 820  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYL------------VLSLPEYNHSIGYAS 867
             + K K+     + + +   V   V  VK +++            V+ LP   H      
Sbjct: 911  HSAKTKKGHTKRRKVELCSEVEVCVAAVKRDFIATVTMEDSFERAVIYLPSRFH------ 964

Query: 868  VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAG---------RLLLLLKAISETET--- 915
              +  T   P  +F  G    A V     S+  G           LL  K  ++ E    
Sbjct: 965  -PNIVTPSAPAGRFECGAVCKAVVKQFCGSTLIGLAEGDLAFATALLSAKVKTKQEKKRG 1023

Query: 916  --SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 973
              S+SKR K    Y    +   +  +     + L+   G  GR+H +E+++       N 
Sbjct: 1024 ADSASKRVKPFMVYPAKVIGPWKRGKQSACAVELELPGGILGRLHGSELDESLLENERNP 1083

Query: 974  FSNF---KIGQTVTARIIA 989
             + F   KI + V  ++I+
Sbjct: 1084 IAAFLREKIAKNVYVKVIS 1102


>gi|339240195|ref|XP_003376023.1| putative S1 RNA binding domain protein [Trichinella spiralis]
 gi|316975284|gb|EFV58732.1| putative S1 RNA binding domain protein [Trichinella spiralis]
          Length = 2154

 Score =  216 bits (551), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 233/851 (27%), Positives = 401/851 (47%), Gaps = 128/851 (15%)

Query: 1004 LSIKPSMLTVSEIGSKLLFEECDVS--IGQRVTGYVYKVDNEWALLTISRHLKAQLFI-- 1059
            +S++PS+    E G+  + EE  V+  +G+  +  V  VDN +  L I+   + ++F   
Sbjct: 1369 ISVQPSI----ESGTAPVIEEKGVAMAVGRLYSASVLSVDNRYVHLFIAGRYRGRIFATE 1424

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
            LD  +   +  E  +   +G  VT  V+   + +K   L+     +     +   S  N 
Sbjct: 1425 LDDQFL-QDGSEPLKTVRLGTTVTVKVIGTKRIRKGGSLM----AECTMKSSKLFSKRNK 1479

Query: 1120 QTFI--HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
            +T I   E  ++G  ++        LVV+   H     HF  + N   S  +S Y     
Sbjct: 1480 KTIIGYKENFVIGEELNV-------LVVERKRH-----HFNVVVNPRWSGEVSFY---TV 1524

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
            DP S +  GQ  K  VL++    R      L L +    M      +L  +  T GK L 
Sbjct: 1525 DPRSAWRNGQLRKVYVLDVDVEKRW-----LKLSALKPAMV-----ELKENGYTFGKLLS 1574

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-----------VESPE 1286
            + +            K++++K CF ML        L+ ++ D Y           VES  
Sbjct: 1575 RDD------------KDLSTKLCFSMLGGARGVASLV-DICDNYDHAVDKWRLLQVESYY 1621

Query: 1287 KEFPIGKLVAGRV-LSVEPLSKRVEVTLKTSDSRTASQSEINN------LSNLHVGDIVI 1339
            K F +GKL      +S+ P       +L   +S  A+ + I +       S L VG++  
Sbjct: 1622 KLFVVGKLENNFWHVSLRP-------SLTGENSSEANNATIRDDPLYSLASELAVGNVYR 1674

Query: 1340 GQIKRVESY--GLFITIENTNLVGLCHVSELSE--DHVDNIETIYRAGEKVKVKILKVDK 1395
            G + +V  Y  GL + + +  L G      +SE  D V  ++  +  G  V VK++ +DK
Sbjct: 1675 GFVSKVRHYKKGLTVLLGH-ELFGNVPCGLISECTDAV-RLDQTFPIGTVVTVKVMSLDK 1732

Query: 1396 EKRRISLGMKSSYFKNDADNLQMSSEEESDEAI-EEVGSYNRSSLLENSSVAVQD---MD 1451
                ++L M S                  D  + ++V    R  L  + S++ Q    ++
Sbjct: 1733 SNGNLTLSMLSK-----------------DTGLPDQVPEKCRKLLQSDDSISSQAQLVLN 1775

Query: 1452 MESEDGGSLVL---AQIESRASVPPLEVNLD-DEQPD---MDNG------ISQNQGHTDE 1498
               E   +L L   +  ES A+   ++V+L+ D   D   M NG       + NQ  +  
Sbjct: 1776 KAEESPAALPLRACSWFESAATKTLIDVSLNADNVSDGTLMVNGKHGAFIANGNQCSSAA 1835

Query: 1499 AKTID---EKNNRHAKKKEKEER--EQEIRAAEERLLEKDAP-RTPDEFERLVRSSPNSS 1552
            +   D   E   R  K K + +R  E+E+   E  L++ + P  T ++++R + +SP+SS
Sbjct: 1836 SGENDYELEVAEREGKSKLELDRLDEEEVLKKELMLMDPERPIETVEDYDRALVASPSSS 1895

Query: 1553 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1612
             +WI+YMA+ +   +++KARS+A +AL+TI   EE E+ N+W+A  NLENEYG    E +
Sbjct: 1896 MLWIRYMAYFVQCNEIDKARSVASKALKTIAYNEEKERFNVWIALMNLENEYGT--GETM 1953

Query: 1613 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1672
             +  + AL   D ++V+L LL +Y+R+++   AD +   ++KK++    VW+   +  ++
Sbjct: 1954 DETVRNALLVNDQQQVYLQLLKIYDRSKKLDAADAVTEVLLKKYRSQFDVWITVGKHFMQ 2013

Query: 1673 -QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTD 1730
              + E   A+++RA+ SLP + H+  +S+ A +EFK  G  +RG ++FE IL+++P+R D
Sbjct: 2014 TNRAEKAHAIMERAMKSLPFNMHVDLMSRFAQMEFKFEGDVERGCTIFENILNDHPRRFD 2073

Query: 1731 LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1790
            +W +Y+D   +  ++D  R L  R  SL +   KM+  FKK+LE E   G  E +  VK 
Sbjct: 2074 IWLVYVDLMAKHRNIDEARPLLRRVTSLKMSAHKMRSFFKKWLELENRYGTAETVADVKS 2133

Query: 1791 KAMEYVESTLA 1801
            +A +YV +  +
Sbjct: 2134 RATDYVNNVFS 2144



 Score =  150 bits (379), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 325/1442 (22%), Positives = 590/1442 (40%), Gaps = 255/1442 (17%)

Query: 19   LPGGLRGLARAADALDPILDNEIEANEDN---LLPTIFHVGQLVSCIVLQLDDDKKEIGK 75
            +PG + G+ +A+      +D+     ED     L ++F   +L+ C+ + +D + ++   
Sbjct: 428  MPGNMNGILKASSVSQSFVDHVQAKREDEEAATLASLFEPAELI-CVKV-IDKEMRQFAS 485

Query: 76   RKI---WL-SLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNN 131
             K+   WL +   + L   ++  T+++  V+   V+S+E+ GY++  G  +  GFL    
Sbjct: 486  GKMHTTWLVTTNPADLNAHITPSTLRKHAVIGCAVRSVEEKGYLMDLGFQNVHGFLSFAE 545

Query: 132  LA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI----- 182
                  EN  + +   +L   V  +     +VV L+        C+   L G  +     
Sbjct: 546  ACRFYPENKQLPIGKPILCTVVEPAAATGGRVVQLN--------CLNGQLNGTDVPKIDE 597

Query: 183  ----DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 238
                 LL+PG++  T VQ   + G++    +   G + +             N+ +    
Sbjct: 598  NFPKSLLMPGLLCRTTVQQHCQQGLICKLNSDLYGWLSLADSPKRRKRA-LANEQSLQGA 656

Query: 239  VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 298
            V   + +  P S  VG +   YLL            D     +  +V R         ST
Sbjct: 657  VELMVTYSLPQSSMVGFSSADYLLRRTRLVERFSF-DAKGSLQTCKVRR---------ST 706

Query: 299  PVSTPAYVT----ISDVAEEEVRK-------------LEKKYKEGSCVRVRILGFRHLEG 341
            P     ++T    I +VA   +RK             L  K+      RVR++G   L+ 
Sbjct: 707  PEKV-QFITDSGAIVNVANCRLRKPVGKKKKSTEKYKLATKH------RVRMIGMSTLKM 759

Query: 342  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ----FPGGVKALCPLPHM 397
            +  G   A           +   G+ V  KV+ V    A+V+    F G + AL    H 
Sbjct: 760  VYHGSCLACDVRQPFSKIDEAAVGLRVTAKVVRVSDTAALVKVFHTFDGKIDAL----HF 815

Query: 398  SEFEI-VKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSY-AEATDRL 453
            S+  + V    KF VG  +  RVL V    +R+ +T K++LVKS L +LS+Y AEA   +
Sbjct: 816  SDGLVSVGCRAKFVVGQTVPTRVLAVDKDLQRLYLTAKRSLVKSDLPLLSAYTAEAVGNV 875

Query: 454  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE---PSSMYHVGQVV-------- 502
                 +  +E+ G  + FYN V+G        L  G +   P+ +YHVGQVV        
Sbjct: 876  YDGFVVQLLERSGVLIGFYNNVRGVLDERAFQL-AGYQKQSPTDVYHVGQVVRVLVVRVD 934

Query: 503  --KCRIMSSIPASRRINLSFMMKPT-RVSEDDL-------VKLGS----------LVSGV 542
              K RI  ++P      L +M+  + +VS   L        + G           L+   
Sbjct: 935  VDKRRIDLALPECSARGLQWMLGCSGKVSNSKLEADVGQCARAGGSKRKPPPFFELLKAE 994

Query: 543  VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN 602
            V  +  + ++V ++  G S   +P+ HL D L    ++ +  + G + D  +VL N    
Sbjct: 995  VKALRDDWLLVELVEYGVS-ARLPSAHLTDSLTTGHLLLASFRVGDKLD--VVLFNSVKG 1051

Query: 603  LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRSK 659
            L+++AK SL+   +  Q P     +    +V G +  +  E G F+   G ++   P+SK
Sbjct: 1052 LVVTAKPSLLYLMRNMQAPRSLDDLKCGQLVTGVLARVHPEHGYFIDLPGNMSALCPKSK 1111

Query: 660  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS----STDASFMQEHFLL 715
                   D      +G +V   ++ VN + G++ ++LK   C      T  + ++++  L
Sbjct: 1112 VEWKCETDAGLANLIGATVVGRVMTVNPQAGKLIINLKLKKCLLNGLHTSIALLKQY--L 1169

Query: 716  EEKIAMLQSSKHNGSELKW----VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG-FI 770
            EE+  +L     N S   W    +  + IG ++E  V    + G++ + E+   V G F+
Sbjct: 1170 EER-ELLSQRFRNPSNTDWKRRLLSKYQIGQLVECTVGMVVESGLICTVED--GVPGIFV 1226

Query: 771  THHQLAGATVES--GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 828
            +        VE   GS +   ++ V  +ER ++L+     +  FR+      A +++R +
Sbjct: 1227 SELLDPHWNVEYAVGSSLTGLVVCVNYSERCLELAAMKQLLANFRQV-----ALRRRRHQ 1281

Query: 829  EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS-DYNTQKFPQKQFLNGQSV 887
             A  D     ++ A V +   + ++LS     H + Y S    YN    P+ +  + + +
Sbjct: 1282 PAVGD-----SLTATVLVANADCVLLSTA--GHGLCYMSARLHYNDFSLPRLKNPDKRQL 1334

Query: 888  IATVMALPSSSTAGRLLL---------------LLKAISETETSSSKRA----KKKSSYD 928
               V A    +T+G+ L+               L  AIS   +  S  A    +K  +  
Sbjct: 1335 RVRVQAY---TTSGQCLVSSVRDEQLCSKIERRLRSAISVQPSIESGTAPVIEEKGVAMA 1391

Query: 929  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
            VG L  A +  +    + L     + GRI  TE++D             ++G TVT ++I
Sbjct: 1392 VGRLYSASVLSVDNRYVHLFIAGRYRGRIFATELDDQFLQDGSEPLKTVRLGTTVTVKVI 1451

Query: 989  AKSNKPDMKKSFLWELSIKPSMLTVSE-----IGSKLLF---EECDVSIGQRVTGYVYKV 1040
              + +     S + E ++K S L         IG K  F   EE +V + +R   +   V
Sbjct: 1452 G-TKRIRKGGSLMAECTMKSSKLFSKRNKKTIIGYKENFVIGEELNVLVVERKRHHFNVV 1510

Query: 1041 DN-EWALLTISRHLKAQLFILD--SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1097
             N  W+        +   + +D  SA+   +L++             +VL ++ EK+ L+
Sbjct: 1511 VNPRWS-------GEVSFYTVDPRSAWRNGQLRKV------------YVLDVDVEKRWLK 1551

Query: 1098 L-VLRPF-----QDGIS-DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1150
            L  L+P      ++G +  K +   + ++ T +    + G R      GV  LV      
Sbjct: 1552 LSALKPAMVELKENGYTFGKLLSRDDKDLSTKLCFSMLGGAR------GVASLV------ 1599

Query: 1151 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC----KVLEISRTVRGTFHV 1206
                       +IC       YD          D+ + ++     K+  + +     +HV
Sbjct: 1600 -----------DIC-----DNYDH-------AVDKWRLLQVESYYKLFVVGKLENNFWHV 1636

Query: 1207 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT--SKGCFIML 1264
              SLR SL G +S+ +++ +T  D P   L    +L+   + +G+V  V    KG  ++L
Sbjct: 1637 --SLRPSLTGENSSEANN-ATIRDDPLYSLA--SELAVGNVYRGFVSKVRHYKKGLTVLL 1691

Query: 1265 SRKLDAKV---LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
              +L   V   L+S  +D      ++ FPIG +V  +V+S++  +  + +++ + D+   
Sbjct: 1692 GHELFGNVPCGLISECTDAV--RLDQTFPIGTVVTVKVMSLDKSNGNLTLSMLSKDTGLP 1749

Query: 1322 SQ 1323
             Q
Sbjct: 1750 DQ 1751


>gi|407923743|gb|EKG16808.1| hypothetical protein MPH_06011 [Macrophomina phaseolina MS6]
          Length = 1803

 Score =  216 bits (550), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/277 (39%), Positives = 177/277 (63%), Gaps = 11/277 (3%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L+ + P++  +FERL+   PN+S +W++YMAF + + +V+KAR I ERAL+TINIRE++E
Sbjct: 1514 LDINGPQSVADFERLLLGDPNNSALWMQYMAFQIGLNEVQKAREIGERALKTINIREQDE 1573

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT---EQNKLAD 1646
            K+NIW A  NLE E GN  ++AV + F+RA +YCD +++H  L+ +Y  T   + ++ AD
Sbjct: 1574 KMNIWTALLNLEIEQGN--DDAVDETFKRACEYCDTEEMHNKLINIYTSTGRHQHSQKAD 1631

Query: 1647 ELLYKM--IKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTA 1702
            +L  +M  IK    +   WL   + ++      +  +A++ RA  S+P   H +  +   
Sbjct: 1632 DLFQRMTKIKSITPNPAFWLNYAKFVMTTLNNPDRARALLPRATQSVPTQHHRQLTANFG 1691

Query: 1703 ILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1760
             +EF   NG A+RGR++FEG+L+ +PKR DLW ++L+ E + GD D +R L+ER  S  +
Sbjct: 1692 AIEFTSANGDAERGRTVFEGLLATFPKRWDLWDMFLELEKKHGDRDNVRRLYERMSSSKM 1751

Query: 1761 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
              ++ KF+FKK+ E+E+  G+++  E V+  A EY E
Sbjct: 1752 KARRAKFVFKKWAEWEQVNGDKKTRERVEALAKEYAE 1788



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 191/763 (25%), Positives = 337/763 (44%), Gaps = 68/763 (8%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDNEIEAN--------EDN 47
           + G V ++  +D+ + LP  L G         +  + ++ +LD + +++        ED 
Sbjct: 158 ILGQVTQITSRDIALALPNNLTGFVPLTAVSDQFTERIEALLDQDEKSDAEDTSSEDEDI 217

Query: 48  LLPTIFHVGQLVSCIVLQLDDDKK---EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 104
            L  IF +GQ +  +V    +D     +  K++I LS++       +S   +    ++ A
Sbjct: 218 ELKNIFKLGQYLRAVVTSTGEDSAKGAQKNKKRIELSVKPQDANNRISRSDLVANTMVQA 277

Query: 105 YVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKV 159
            V S+EDHG ++  GL   S  GF+      E  GID   ++ G +   +V  +    K+
Sbjct: 278 SVVSVEDHGLVMDLGLADGSIKGFMSSK---EVGGIDHTKIEKGSVFLCMVTGLSSNGKI 334

Query: 160 VYLSSDPDTVSKCVTKD--LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 217
             LS+D   +      +   +  +ID+ VPG  V   V  +   G+  + +     T D+
Sbjct: 335 AKLSADFQKIGNVKKANYLTEAPTIDVFVPGTAVEFLVSEVTTTGLAGTIMGLIDATADV 394

Query: 218 FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL--------HNRAP 267
            H        +  N Y   +KV ARI+   P    R +G+++  ++L          + P
Sbjct: 395 VHAGAGASQQDLTNKYKIGEKVKARIICTFPGDERRKLGVSVLDHVLSLTERQSADAKGP 454

Query: 268 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK---KYK 324
              + +  I +++KV +V+   GL +D+    V  P +  IS +++++V  L +    YK
Sbjct: 455 LDVLPISSIVEEAKVTKVEPIRGLFMDVGVKRV--PGFAHISRLSDDKVDSLSETTGAYK 512

Query: 325 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV-----IAVDSFG 379
            GS  R R++G+  ++G+    L+            DVK G VVKGKV      A  S  
Sbjct: 513 LGSTHRARVVGYNPVDGMYIVSLEKKVLNQPFLRIDDVKVGEVVKGKVEKVMITARGSGA 572

Query: 380 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVK 437
            IV    G+  L    H+++  +  P KK+K G  +  RVL    +R  + +T KKTLV 
Sbjct: 573 VIVNLAEGISGLVSETHIADVHLQHPEKKYKEGLAVTARVLSTDPERRQVRLTLKKTLVN 632

Query: 438 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 497
           S   + ++Y++        G I K+   G  V+FY  ++GF P SE+      +P+  + 
Sbjct: 633 SDAPVWANYSDVQIGEQAPGTIIKLLPAGAIVQFYGDLRGFLPVSEMSEAYIKDPAEHFR 692

Query: 498 VGQVVKCRIMSSIPASRRINLSFMMKPTR-VSEDDL---VKLGSLVSGVVDVVTPNAVVV 553
           +GQ V    +S      ++ +S     +R  ++ D    +++ ++V GVV   +   V V
Sbjct: 693 IGQTVTVHALSVNAEEDKMTVSCRDPASRNAAQQDTFGSLQVTTIVKGVVSEKSEKNVTV 752

Query: 554 YVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSN--LLLSAKYS 610
            +      KG +   HL D  E     K   I+ G   + L++L        + LS K S
Sbjct: 753 ELEGSAI-KGILRLGHLTDGSEKKGESKIKRIRVGQTLEDLVILSKSDKRPVVTLSNKPS 811

Query: 611 LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
           L+ +AQ   LP+    +     V G+V NI +   FV F   L G   +S+     + ++
Sbjct: 812 LVAAAQSGSLPAKFEDVKEGKPVTGFVRNIDDQRVFVEFADGLVGLLLKSQ----MKEEM 867

Query: 669 SKTYYVG----QSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
            KT   G     +V   IL V+    R  ++L+    +++D +
Sbjct: 868 QKTVGYGLQNDSTVTGKILSVDVRQRRFLITLRDDHQAASDKA 910



 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 169/806 (20%), Positives = 341/806 (42%), Gaps = 132/806 (16%)

Query: 650  RLTGFAPRSKAVDGQRADLSKT---YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            R+ GFA  S+  D +   LS+T   Y +G + R+ ++  N   G   +SL++        
Sbjct: 486  RVPGFAHISRLSDDKVDSLSETTGAYKLGSTHRARVVGYNPVDGMYIVSLEKKV------ 539

Query: 707  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE-----SNDFGVVVSFE 761
              + + FL                    ++   +G V++GKV +          V+V+  
Sbjct: 540  --LNQPFLR-------------------IDDVKVGEVVKGKVEKVMITARGSGAVIVNLA 578

Query: 762  EHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
            E   + G ++   +A   ++        G  + A +L      R V L+LK   ++    
Sbjct: 579  EG--ISGLVSETHIADVHLQHPEKKYKEGLAVTARVLSTDPERRQVRLTLKKTLVNSDAP 636

Query: 815  ANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 873
              +N              D+ +  Q    I++++    +V     Y    G+  VS+ + 
Sbjct: 637  VWANYS------------DVQIGEQAPGTIIKLLPAGAIVQF---YGDLRGFLPVSEMSE 681

Query: 874  Q--KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS--SYDV 929
               K P + F  GQ+V  TV AL  ++   ++      +S  + +S   A++ +  S  V
Sbjct: 682  AYIKDPAEHFRIGQTV--TVHALSVNAEEDKM-----TVSCRDPASRNAAQQDTFGSLQV 734

Query: 930  GSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
             ++V+  ++E     + ++  G    G + +  + D      E+     ++GQT+   +I
Sbjct: 735  TTIVKGVVSEKSEKNVTVELEGSAIKGILRLGHLTDGSEKKGESKIKRIRVGQTLEDLVI 794

Query: 989  -AKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQRVTGYVYKVDNEWAL 1046
             +KS+K       +  LS KPS++  ++ GS    FE  DV  G+ VTG+V  +D++   
Sbjct: 795  LSKSDK-----RPVVTLSNKPSLVAAAQSGSLPAKFE--DVKEGKPVTGFVRNIDDQRVF 847

Query: 1047 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIG----KAVTGHVLSINKEKKLLRLVLRP 1102
            +  +  L     +L S  +    +E Q+    G      VTG +LS++  ++   + LR 
Sbjct: 848  VEFADGLVG--LLLKSQMK----EEMQKTVGYGLQNDSTVTGKILSVDVRQRRFLITLRD 901

Query: 1103 FQDGISDKTVD-------ISNDNMQTFIHE-----GDIVGGRISKI-LSGV--GGLVVQI 1147
                 SDK           +N+ +   + E      D   G+++   ++GV    L VQ+
Sbjct: 902  DHQAASDKATSAKASKGPATNETLVNSVDESCKSISDFTFGKLTTARITGVKETQLNVQL 961

Query: 1148 GPHLYGRVHFTELKNICVSDPLSGYD--EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
              +L+GR+  +E+           +D  + +  PL  +   Q +  +++ I    R    
Sbjct: 962  ADNLFGRIDVSEV--------FDSWDHIKDRKHPLRNFKAKQNIPVRIIGI-HDARSHRF 1012

Query: 1206 VELSLRSSLDGMS--STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
            + +S R+S   +   +  + +LS + D     L  +E L+       +V N+     ++ 
Sbjct: 1013 LPISHRTSKVPVFELTAKAVELSKESD-----LLSLEKLTVGSSHIAFVNNIGDNCVWVN 1067

Query: 1264 LSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            ++  +  ++   +L+D    +      FP+G  +  RV SV   + R+++T  TSDS   
Sbjct: 1068 ITPNVRGRIDFMDLADDVSLLNDVPAHFPVGSALKVRVKSVNVSANRLDLT-ATSDSTVK 1126

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1381
              +      +L  G  + G++ +V    + + + + N+     ++E ++D+ +   TIY 
Sbjct: 1127 PTT----FKDLAPGMTLPGRVTKVSERNIMVQLSD-NVSAPVTLTEFTDDYTEANPTIYN 1181

Query: 1382 AGEKVKVKILKVDKEKRRISLGMKSS 1407
              + V+V +L+VD   +++ L M+ S
Sbjct: 1182 KNDIVRVSVLEVDAPNKKLHLTMRPS 1207



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 149/332 (44%), Gaps = 41/332 (12%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 144
            LSLE +  G    A+V +I D+   ++   P+  G +   +LA++  +  DV      G 
Sbjct: 1041 LSLEKLTVGSSHIAFVNNIGDNCVWVNI-TPNVRGRIDFMDLADDVSLLNDVPAHFPVGS 1099

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVT-KDLKGISIDLLVPGMMVSTRVQSILENGV 203
             L+  V+S++ +   + L++  D+  K  T KDL         PGM +  RV  + E  +
Sbjct: 1100 ALKVRVKSVNVSANRLDLTATSDSTVKPTTFKDL--------APGMTLPGRVTKVSERNI 1151

Query: 204  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY-LL 262
            M+      +  V +    + +   N    YN++  V   +L VD  ++ + LT+ P  +L
Sbjct: 1152 MVQLSDNVSAPVTLTEFTDDYTEAN-PTIYNKNDIVRVSVLEVDAPNKKLHLTMRPSKVL 1210

Query: 263  HNRAPPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEE 315
             +  P    +V +I  Q KV  V RG        GL +   S   S  A+V +SD+++  
Sbjct: 1211 SSSLPVKDPQVANIR-QVKVNDVVRGFIKNVSDKGLFV---SLGPSVTAFVRVSDLSDSY 1266

Query: 316  VRKLEKKYKEGSCVRVRILG----FRHLE-GLATGILKASAFEGLVFTHSDVKPGMVVKG 370
            ++  +  ++    V+ +I+       H++  L   +L  +    L F   D+K GMV+ G
Sbjct: 1267 IKDWKSAFEVDQLVKGKIIQVDPQLNHVQMSLKASMLDKNYVPPLTF--DDMKAGMVITG 1324

Query: 371  KVIAVDSFGA--IVQFPGGVKALCPLPHMSEF 400
            K+  V+ FG   +V     V  LC   H SE 
Sbjct: 1325 KIRKVEEFGVFIVVDNSKNVSGLC---HRSEI 1353



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 97/184 (52%), Gaps = 13/184 (7%)

Query: 1238 KIEDLSPNMIVQGYVKNV--TSKGC---FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            +I+D+    +V+G V+ V  T++G     + L+  +   V  ++++D +++ PEK++  G
Sbjct: 546  RIDDVKVGEVVKGKVEKVMITARGSGAVIVNLAEGISGLVSETHIADVHLQHPEKKYKEG 605

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI---NNLSNLHVGDIVIGQIKRVESYG 1349
              V  RVLS +P  ++V +TLK    +T   S+     N S++ +G+   G I ++   G
Sbjct: 606  LAVTARVLSTDPERRQVRLTLK----KTLVNSDAPVWANYSDVQIGEQAPGTIIKLLPAG 661

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
              +     +L G   VSE+SE ++ +    +R G+ V V  L V+ E+ ++++  +    
Sbjct: 662  AIVQFYG-DLRGFLPVSEMSEAYIKDPAEHFRIGQTVTVHALSVNAEEDKMTVSCRDPAS 720

Query: 1410 KNDA 1413
            +N A
Sbjct: 721  RNAA 724



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 93/439 (21%), Positives = 178/439 (40%), Gaps = 65/439 (14%)

Query: 405  PGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVK-----------SKLAILSSYAEA 449
            P + FK    +  R++G+   R    + ++H+ + V            SK + L S  + 
Sbjct: 987  PLRNFKAKQNIPVRIIGIHDARSHRFLPISHRTSKVPVFELTAKAVELSKESDLLSLEKL 1046

Query: 450  TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIM 507
            T       ++  I  +  +V     V+G     +L  D     +  + + VG  +K R+ 
Sbjct: 1047 TVGSSHIAFVNNIGDNCVWVNITPNVRGRIDFMDLADDVSLLNDVPAHFPVGSALKVRVK 1106

Query: 508  SSIPASRRINLSFM----MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 563
            S   ++ R++L+      +KPT   +   +  G  + G V  V+   ++V  ++   S  
Sbjct: 1107 SVNVSANRLDLTATSDSTVKPTTFKD---LAPGMTLPGRVTKVSERNIMVQ-LSDNVSAP 1162

Query: 564  TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP---- 619
               TE   D+ E    + +  K       +L +D  +  L L+ + S + S+  LP    
Sbjct: 1163 VTLTEFTDDYTEANPTIYN--KNDIVRVSVLEVDAPNKKLHLTMRPSKVLSSS-LPVKDP 1219

Query: 620  --SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 677
              ++   +  N VV G++ N+ + G FV     +T F   S   D    D    + V Q 
Sbjct: 1220 QVANIRQVKVNDVVRGFIKNVSDKGLFVSLGPSVTAFVRVSDLSDSYIKDWKSAFEVDQL 1279

Query: 678  VRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 737
            V+  I+ V+ +   + +SLK        AS + ++++       +++             
Sbjct: 1280 VKGKIIQVDPQLNHVQMSLK--------ASMLDKNYVPPLTFDDMKA------------- 1318

Query: 738  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAI 790
               G VI GK+ +  +FGV +  +   +V G     ++A   VE        G  ++A +
Sbjct: 1319 ---GMVITGKIRKVEEFGVFIVVDNSKNVSGLCHRSEIADQKVEDVTKLYSEGDAVKAVV 1375

Query: 791  LDVAKAERLVDLSLKTVFI 809
            L V K +R V+  LK  ++
Sbjct: 1376 LKVDKEKRKVNFGLKASYL 1394



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 178/820 (21%), Positives = 334/820 (40%), Gaps = 102/820 (12%)

Query: 624  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
             + P S++ G V  I      +     LTGF P + AV  Q  +  +   + Q  +S+  
Sbjct: 151  RLAPGSMILGQVTQITSRDIALALPNNLTGFVPLT-AVSDQFTERIEAL-LDQDEKSDAE 208

Query: 684  DVNSETGRITLS----LKQ---SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            D +SE   I L     L Q   +  +ST     +     +++I +    +   + +   +
Sbjct: 209  DTSSEDEDIELKNIFKLGQYLRAVVTSTGEDSAKGAQKNKKRIELSVKPQDANNRISRSD 268

Query: 737  GFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAG---ATVESGSVIQAAILD 792
              +  ++++  V    D G+V+        + GF++  ++ G     +E GSV    +  
Sbjct: 269  -LVANTMVQASVVSVEDHGLVMDLGLADGSIKGFMSSKEVGGIDHTKIEKGSVFLCMVTG 327

Query: 793  VAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT-VNAIVEIVKENY 851
            ++   ++  LS     I   ++AN   +A         + D+ V  T V  +V  V    
Sbjct: 328  LSSNGKIAKLSADFQKIGNVKKANYLTEA--------PTIDVFVPGTAVEFLVSEVTTTG 379

Query: 852  L---VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL--LLL 906
            L   ++ L +    + +A      +Q+    ++  G+ V A ++         +L   +L
Sbjct: 380  LAGTIMGLIDATADVVHAGAG--ASQQDLTNKYKIGEKVKARIICTFPGDERRKLGVSVL 437

Query: 907  LKAISETETSSSKRAKKKSSYDVGSLVQ-AEITEIKPLE-LRLKFGIG-FHGRIHITEVN 963
               +S TE  S+          + S+V+ A++T+++P+  L +  G+    G  HI+ ++
Sbjct: 438  DHVLSLTERQSADAKGPLDVLPISSIVEEAKVTKVEPIRGLFMDVGVKRVPGFAHISRLS 497

Query: 964  DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFE 1023
            DDK + +      +K+G T  AR++  +    M     + +S++  +L      ++    
Sbjct: 498  DDKVDSLSETTGAYKLGSTHRARVVGYNPVDGM-----YIVSLEKKVL------NQPFLR 546

Query: 1024 ECDVSIGQRVTGYVYKV-----DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1078
              DV +G+ V G V KV      +   ++ ++  +     + ++      LQ  ++++  
Sbjct: 547  IDDVKVGEVVKGKVEKVMITARGSGAVIVNLAEGISG--LVSETHIADVHLQHPEKKYKE 604

Query: 1079 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1138
            G AVT  VLS + E++ +RL L+      SD  V  +  ++Q     G+   G I K+L 
Sbjct: 605  GLAVTARVLSTDPERRQVRLTLKKTLVN-SDAPVWANYSDVQI----GEQAPGTIIKLLP 659

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
               G +VQ    L G +  +E+    + DP   +  GQ                      
Sbjct: 660  A--GAIVQFYGDLRGFLPVSEMSEAYIKDPAEHFRIGQ---------------------- 695

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDV---DTPGKHLEKIEDLSPNMIVQGYVKNV 1255
            TV  T H  LS+ +  D M+ +     S +    DT G        L    IV+G V   
Sbjct: 696  TV--TVHA-LSVNAEEDKMTVSCRDPASRNAAQQDTFGS-------LQVTTIVKGVVSEK 745

Query: 1256 TSKGCFIMLSRKLDAKVL-LSNLSDGYV---ESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1311
            + K   + L       +L L +L+DG     ES  K   +G+ +   V+ +    KR  V
Sbjct: 746  SEKNVTVELEGSAIKGILRLGHLTDGSEKKGESKIKRIRVGQTLEDLVI-LSKSDKRPVV 804

Query: 1312 TLKTSDSRTA---SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1368
            TL    S  A   S S      ++  G  V G ++ ++   +F+   +  LVGL   S++
Sbjct: 805  TLSNKPSLVAAAQSGSLPAKFEDVKEGKPVTGFVRNIDDQRVFVEFAD-GLVGLLLKSQM 863

Query: 1369 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1408
             E+    +    +    V  KIL VD  +RR  + ++  +
Sbjct: 864  KEEMQKTVGYGLQNDSTVTGKILSVDVRQRRFLITLRDDH 903


>gi|393909953|gb|EJD75660.1| S1 RNA binding domain-containing protein [Loa loa]
          Length = 1790

 Score =  216 bits (550), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 191/302 (63%), Gaps = 5/302 (1%)

Query: 1499 AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIK 1557
            A  I+E+N    K++ + E E+++   E ++LE +  P   ++F+RLV  +PNSS +WI+
Sbjct: 1482 ADNIEEQNRPKTKEELQIEEEKKLINRERKILEANWIPDNTNDFDRLVAGTPNSSILWIR 1541

Query: 1558 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1617
            Y+ F L   DVEKAR++A+RAL  IN REE+E  N+W AY NLE  +G    E++  VF 
Sbjct: 1542 YITFFLEQNDVEKARAVADRALSVINFREEDEIFNVWTAYLNLEGNFGT--SESLKAVFD 1599

Query: 1618 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-CKVWLRRVQRLLKQQQ- 1675
             A++  D  K++  ++ +Y+   + +  D+LL +M+K+F+H    VW    Q LL+ ++ 
Sbjct: 1600 NAIKNTDALKMYKQMVKIYQNLGKIQELDDLLDEMLKRFRHDDLDVWFIYGQHLLETKRP 1659

Query: 1676 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1735
            +  + ++++A+  L R  H+  +S+ A LEFK G  ++ +++FE IL+ YPK+TD+W++Y
Sbjct: 1660 DKARDLMKKAINCLSRKHHVTILSRFAQLEFKFGDMEQSKTIFENILNSYPKKTDVWTVY 1719

Query: 1736 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
            +D  I++G  +  R L ER  +L L   K++  FKK++  E+  G+EE+   VK++A+ Y
Sbjct: 1720 IDLLIKVGKFEDARQLLERVTALKLSTHKIRLFFKKWVGLEQMHGDEEQQNNVKERALHY 1779

Query: 1796 VE 1797
            ++
Sbjct: 1780 LQ 1781



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 231/962 (24%), Positives = 414/962 (43%), Gaps = 123/962 (12%)

Query: 99   GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRS 152
            G+VL   V+S+ED G I++ GL S    GFL   +L     + S I+ +P LL      S
Sbjct: 152  GLVLNGVVESVEDKGVIINLGLQSVELKGFLAEKHLPPTFQKESLIEGQPLLLRIQNENS 211

Query: 153  IDRTRKVVYLSSDPDTVSKCVTK-DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 211
             ++  +VV LS+ P+   +C+    +K + ++ L+PG ++         +GV ++     
Sbjct: 212  SNKKSRVVSLSAVPEM--ECLDDIAVKNLKLNDLMPGTLLLVNPLQPTASGVYVNIGNDI 269

Query: 212  TGTVDIFHLQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NR 265
             G V+  HL        ++ND +   K     ++F    S  + L  +P ++       R
Sbjct: 270  KGYVNRQHL-----PPRYRNDSFKCLKSFKTIVMFCQQNSNLLALNGHPDIIAASKFAKR 324

Query: 266  APPSHVKVGDIYDQSKVVRVDRG----LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 321
                +V  GDI  + KV  V++       L+L          A+   +++ E+ V     
Sbjct: 325  TNFENVHTGDII-ECKVSNVNKNGDVNFDLVLHGDERNSLVAAFARKTEL-EDHV----- 377

Query: 322  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 381
            +YK+G+  + R+L F+ +E +     +       +    D  PGM V  KV +V   G  
Sbjct: 378  EYKKGTIHQTRVLSFKMVERILIVATRKDILAQKMVCVKDAVPGMKVIAKVESVLPKGLF 437

Query: 382  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSK 439
            V+    +    P  H+S+  I +  K F VG EL  R+L V    +R+ +T+K++L  +K
Sbjct: 438  VKIYNSIPGFIPKIHLSDKLITRIDKHFAVGDELTCRILTVNEAKERLILTNKQSLTTNK 497

Query: 440  LAILSSYAEATDRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSM 495
              ++ SYAE T   IT G+I  + +H   G  + FY G +GF  P+    L       + 
Sbjct: 498  DTVIKSYAEVTTNAITTGYI--VSQHPSGGLIIGFYGGTRGFMFPKETERL------GTN 549

Query: 496  YHVGQVVKCRIMSSIPASRRINLSFM-----------MKPTRVSEDDLVKLGSLVSGVV- 543
              VG  V+ R++S  P   R+ ++              +P  +   + V   ++V  ++ 
Sbjct: 550  IKVGLTVRVRVVSVDPQRGRMLVAVANAANDGTEIAKAQPFLIDGGNSVSFSAVVMNILS 609

Query: 544  --DVVTPNAVVVYVIAKGYS-----KGTIPTEHLADHLE--HATVMKSVIKPGYEFDQLL 594
              +   PN ++   +  G       K  IP E L+D L+   A++ +S I  G    ++ 
Sbjct: 610  NDNKSKPNEILNVTVRLGKKLGGKVKAFIPKELLSDCLDLPFASLSES-IALGSVLPKVT 668

Query: 595  VLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNII----ETGCFVRFL 648
            VL + + NL +++K  +I+  ++ P  +   ++    +V G   NII    E G FV   
Sbjct: 669  VLGDVAGNLKVTSKRFMIDWLEKHPRITGLQNLTKGELVCG---NIIRKHKEMGYFVELA 725

Query: 649  GRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
            G     AP    R  A+     +L     +GQ+V + +  V+ E  R  L L    C   
Sbjct: 726  GGSALTAPARFIRPMALPVSMQELQ----IGQTVVARVSSVDLERKRFALILDAHLCIPP 781

Query: 705  DAS---FMQE--HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 759
             A    F     H+ LEE +    ++  N S++       IG  I+ KV E ++  VVV 
Sbjct: 782  GAELDYFAPSIVHYSLEE-LNWFIANNPNYSQVPE-----IGECIDIKVVEISECSVVVQ 835

Query: 760  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID-RFREANSN 818
            +  + D+ G   ++      ++ GS  +A +LDV    +L    L    +D   +  N  
Sbjct: 836  YASNPDLKGCAINNT---NILQKGSCAKALVLDV----KLPTCELVLFLLDGGVQHLNEK 888

Query: 819  RQAQKKKRKREASKDLGVHQTVNAIVEIVKE-NYLVLSLPEYNH---SIGYASVSDYNTQ 874
            +       K+E    + +H+   A+  +  E +  V+S+P   H   +I    + + + Q
Sbjct: 889  KLQSLLCSKKEFDAKIWLHKREYAVATVETEKSAFVVSIPMRLHPNVNITSVDLDENSNQ 948

Query: 875  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGS 931
                 + ++G  +I T M +         L+  K  +  +++  K+ K+   Y    +G 
Sbjct: 949  CIITPKLISGNVMIGTAMEILKKYG----LIHRKFKTPIKSAVKKKLKQFKIYTAKVMGM 1004

Query: 932  LVQAEITEIKPLELRLKFGIGFHGRIHITEVN----DDKSNVVENLFSNFKIGQTVTARI 987
              + ++     LEL      G  GR+H +E +    D  S  +++     K G+TV  +I
Sbjct: 1005 WSKGDLYNAIELEL----PDGSIGRLHASEFDESFLDQTSQPIQSFLKKRK-GKTVNVKI 1059

Query: 988  IA 989
            + 
Sbjct: 1060 MC 1061


>gi|170571773|ref|XP_001891858.1| S1 RNA binding domain containing protein [Brugia malayi]
 gi|158603388|gb|EDP39328.1| S1 RNA binding domain containing protein [Brugia malayi]
          Length = 1795

 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/277 (37%), Positives = 181/277 (65%), Gaps = 5/277 (1%)

Query: 1524 AAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1582
            A E ++LE D  P   ++F+RLV  SPNSS +WI+Y+ F L   D++KAR++AERAL  I
Sbjct: 1512 ARERKILEADWIPDNTNDFDRLVTGSPNSSILWIRYITFFLEQNDIDKARAVAERALSVI 1571

Query: 1583 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1642
            N REE+E  N+W AY NLE  +G    E++  VF  A++  DP K++  ++ +Y++ E+ 
Sbjct: 1572 NFREEDEIFNVWTAYLNLEGNFGT--SESLKAVFANAVRNTDPLKMYKQMVKIYQKLEKI 1629

Query: 1643 KLADELLYKMIKKFKHS-CKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQ 1700
            +  D+LL +M+K+F+H    VW    Q LL+ ++ +  + ++++A+  L R  H+  +S+
Sbjct: 1630 EEIDDLLEEMLKRFRHDDLDVWFIYGQHLLETKRPDKARNLMKKAINCLQRKHHVTILSR 1689

Query: 1701 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1760
             A LEFK G  ++ +++FE IL+ YPK+TD+W++Y+D  I+   ++  R L ER  +L L
Sbjct: 1690 FAQLEFKFGDIEQSKTIFESILNSYPKKTDVWTVYIDXLIKAEKIEDARQLLERVTALKL 1749

Query: 1761 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
               K++  FKK+++ E+  G+E++   VK++A++Y++
Sbjct: 1750 STHKIRLFFKKWVDLEQKHGDEKQQNNVKERAVQYLQ 1786



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 206/808 (25%), Positives = 348/808 (43%), Gaps = 103/808 (12%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGKRK----IWLSLRLSLLYKGLSLETVQEGMVLTA 104
           L  +F VGQ+++  V++  +      KRK      +S    ++   L+   + +G+VL  
Sbjct: 105 LEDVFRVGQMLAFKVIKGRETHDTQKKRKKASYPIVSCDPLIVNFHLNPGALIDGLVLNG 164

Query: 105 YVKSIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRK 158
            V S+ED G I+  GL S    GFL   +L     + S I  +P LL      S ++  +
Sbjct: 165 VVGSVEDKGVIIDLGLQSVELKGFLAERHLPSTFPKESLIKGQPLLLRIQNESSSNKKAR 224

Query: 159 VVYLSSDPD--TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
           V+ LS+ P+   +   V K LK   ++ L+PG ++         +GV ++      G V 
Sbjct: 225 VISLSAVPEMECLDXAVVKKLK---LNDLMPGTLLLVNPLQPTHSGVYVNIGNDIKGYVS 281

Query: 217 IFHLQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSH 270
             HL        ++ND Y   K     ++F    S  + L  +P +     L  R    +
Sbjct: 282 RQHL-----PPRYRNDPYKCLKSFKTIVMFCQQNSNLLTLNGHPDIIAVSKLVKRTNFEN 336

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 330
             +GDI  + +V  VD+   +  D+            ++  A +   K   +YK+G+  +
Sbjct: 337 XHIGDII-ECRVSSVDKNGNVNFDLVHEDERNS---LVAAFARKTKLKDSVEYKKGTVHQ 392

Query: 331 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 390
            R+L F+ +E +     + +     + +  D  PG+ V  K+ +V   G  V+    +  
Sbjct: 393 ARVLSFKMVERILIVATQKNILAQKMVSIKDAVPGVKVTAKIESVLDKGLFVKIYNSIPG 452

Query: 391 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAE 448
             P  H+S+  I +  K F VG EL  RVL V    +R+ +T+K++L+ SK  I+ +YAE
Sbjct: 453 FIPKIHLSDKLITRIEKHFVVGDELNCRVLNVNKLKERLILTNKQSLISSKDTIIKNYAE 512

Query: 449 ATDRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSMYHVGQVVKC 504
            T  +IT G+I  I +H   G  + FY G  GF  P+    L    +      VG  V+ 
Sbjct: 513 VTTNVITTGYI--ISQHSSGGLVIGFYGGTCGFMFPKEAERLGTNVK------VGLTVRV 564

Query: 505 RIMSSIPASRRINLSFM-----------MKPTRVSEDDLVKLGSLVSGVV---DVVTPNA 550
           R++S  P  +R+ ++              +P  +  ++ +   ++V  V    D +T N 
Sbjct: 565 RVVSVDPQRKRLLVALANTTNGGTGIARAQPFLMDRENPLSFSAVVVNVSSNGDNLTRNE 624

Query: 551 VVVYVIAKGYS-----KGTIPTEHLADHLE---HATVMKSVIKPGYEFDQLLVLDNESSN 602
           V+   +  G       K  IP E L+D+L+   H+  +   I PG    ++ VL + + N
Sbjct: 625 VLNVSVRLGKKLGGKVKAFIPKELLSDYLDLPFHS--LNESIAPGSVLPKVTVLGDIAGN 682

Query: 603 LLLSAKYSLINSAQQLPSDASHIHPNSVVHG-YVC-NII----ETGCFVRFLG--RLTGF 654
           L +++K  +I+    L   A       +  G  VC NII    E G FV   G   LTG 
Sbjct: 683 LKVTSKRFIID---WLEKHARITGIQDLTKGDLVCGNIIQKHKEMGYFVELAGGSALTGP 739

Query: 655 A----PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS--- 707
           A    P    V  Q         +GQ+V + +  V+ E  R  L L    C    A    
Sbjct: 740 ARFIRPMMLPVSMQELQ------IGQTVVARVSSVDLERKRFALILDTHLCVPPGAKPDY 793

Query: 708 FMQE--HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
           F     H+ +EE    + ++  N    K      IG  I  KV E ++  VVV   ++++
Sbjct: 794 FAPSMIHYTVEELNWFIANNASNSQVPK------IGECIHVKVIEVSERNVVVQHGDNTN 847

Query: 766 VYGFITHHQLAGATVESGSVIQAAILDV 793
           + G   +   +   ++ GS  +A +LD+
Sbjct: 848 LKGCTIN---STNILQKGSYAKALVLDI 872



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 6/183 (3%)

Query: 1225 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1284
            ++T  +   + +  I+D  P + V   +++V  KG F+ +   +   +   +LSD  +  
Sbjct: 407  VATQKNILAQKMVSIKDAVPGVKVTAKIESVLDKGLFVKIYNSIPGFIPKIHLSDKLITR 466

Query: 1285 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1344
             EK F +G  +  RVL+V  L +R+ +T K S   ++  + I N + +    I  G I  
Sbjct: 467  IEKHFVVGDELNCRVLNVNKLKERLILTNKQS-LISSKDTIIKNYAEVTTNVITTGYIIS 525

Query: 1345 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404
              S G  +        G     E      + + T  + G  V+V+++ VD +++R+ + +
Sbjct: 526  QHSSGGLVIGFYGGTCGFMFPKE-----AERLGTNVKVGLTVRVRVVSVDPQRKRLLVAL 580

Query: 1405 KSS 1407
             ++
Sbjct: 581  ANT 583


>gi|323508229|emb|CBQ68100.1| related to RRP5-processing of pre-ribosomal RNA [Sporisorium
            reilianum SRZ2]
          Length = 1557

 Score =  214 bits (546), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/292 (40%), Positives = 181/292 (61%), Gaps = 7/292 (2%)

Query: 1511 KKKEKEEREQEIRAAEERL---LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD 1567
            ++KEK + +    A E+ L   L   AP +  +FERL+  SPNSSF+WI++M+F L ++D
Sbjct: 1250 QRKEKAKAKSRKSALEDDLTADLASKAPESATDFERLLLGSPNSSFLWIQFMSFALQLSD 1309

Query: 1568 VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1627
            V++AR+IA RAL+ IN REE E++N+W+A  NLEN YG+  ++ +   F+ A+Q  D   
Sbjct: 1310 VDQARTIARRALKVINYREEQERMNVWIALLNLENTYGS--DDTLDATFREAVQANDGFT 1367

Query: 1628 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQ-RAL 1686
            ++L L+G+ E   +   ADE   K   K+    + W+   +  L+ ++      +  RA+
Sbjct: 1368 MYLKLIGILEGAGKLDAADETWVKAKGKYSTQPEFWIEYARFFLRTRRADAARALLPRAM 1427

Query: 1687 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1746
             +L +  H + I+  AI EFK G A+RGR++FEG++  YPKR DLW  YLDQE RL +  
Sbjct: 1428 QALDKRAHTQTITAFAINEFKLGDAERGRTIFEGLVDSYPKRLDLWWQYLDQESRLPENQ 1487

Query: 1747 L-IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
              +R LFER ++L L  KK K L KK+LEYEK+ G+ +  + V  +A E+V+
Sbjct: 1488 AQVRNLFERTLTLKLTAKKGKSLLKKWLEYEKAHGDAKSQQKVLNRAKEFVD 1539



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 147/560 (26%), Positives = 255/560 (45%), Gaps = 53/560 (9%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSLETV 96
           L  +FHVGQ +   V+Q+       G+            R++ LSL   L+  G+S+  +
Sbjct: 236 LRELFHVGQWLVASVVQVRSGDVAKGRPTREGGEYEKESRRVELSLAPHLVNAGVSVSDL 295

Query: 97  QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--------NSGIDVKPGLLLQG 148
             G  L+A + S+EDHGY+L  GL   +GF+P  + A+         +G  ++ G ++  
Sbjct: 296 DTGATLSAAISSVEDHGYMLDAGLAELSGFVPFTDAAKLPASFHAGKNGKSLQVGSVVFA 355

Query: 149 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 208
            +  I   ++    + DP TV     K     SI  ++PG +    + + L  G+ +   
Sbjct: 356 KITRIPENKRSFDATLDPKTVRTSPIK--HAPSITAILPGTLTKVLITASLPTGLNVKLF 413

Query: 209 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 255
             F  T+D FHL       +  + Y +  K  AR+L+  + P S           R  GL
Sbjct: 414 GMFDATIDRFHLPELPEGKDIPDVYKEGSKHVARVLWDLLAPPSAALQGDNPDHERKFGL 473

Query: 256 TLNPYLLHNRAPPS-------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 308
           +L P +L   AP +       H        +  VV+     GL++ +  T +    +V I
Sbjct: 474 SLAPQVLALEAPVAKDDQLLQHAFPIGAALKVTVVQTINDWGLIVSVHDTDLR--GFVHI 531

Query: 309 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 365
           S V+++ V  L      + +GS  + R++G    +      LKAS  E      S+V+ G
Sbjct: 532 SQVSDDHVVALPPSSGPFAKGSVHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVG 591

Query: 366 MVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
            VV   +I +    AI +Q  G V  +    H ++ ++ +P K+FK G ++  RV+ V  
Sbjct: 592 EVVNASIIKLGLPNAIFLQLQGHVDGVVFANHFADVKLTQPEKRFKPGLQVKARVMDVDP 651

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
              RI +T KK+LVKS L I++S  +A   ++T+  + +++ +   V  + G++   P  
Sbjct: 652 NRNRIVLTLKKSLVKSDLPIVASMQDARVGVVTNATVFRVQTNSLIVSLFGGLRALVPGR 711

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE--DDLVKLGSLV 539
           E+  D   +  S +  G+VVK RI      ++R+  S     P  +++   D V++G  V
Sbjct: 712 EVSEDDFNDVKSGFGEGKVVKMRITEVDYENQRLVGSIKQASPEYLAKLNVDAVEVGETV 771

Query: 540 SGVVDVVTPNAVVVYVIAKG 559
           +G V  V    VV+ ++  G
Sbjct: 772 TGKVAAVHKEVVVLTLVPSG 791



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 131/609 (21%), Positives = 238/609 (39%), Gaps = 66/609 (10%)

Query: 241  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
            AR++   PT R + L+L   +L  +              + ++++     + L +     
Sbjct: 557  ARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVGEVVNASIIKLGLPNAIFLQLQG--- 613

Query: 301  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVF 357
                 V  +  A+ ++ + EK++K G  V+ R++            LK S  +    +V 
Sbjct: 614  HVDGVVFANHFADVKLTQPEKRFKPGLQVKARVMDVDPNRNRIVLTLKKSLVKSDLPIVA 673

Query: 358  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE--FEIVKPGKKFKVGAEL 415
            +  D + G+V    V  V +   IV   GG++AL P   +SE  F  VK G  F  G  +
Sbjct: 674  SMQDARVGVVTNATVFRVQTNSLIVSLFGGLRALVPGREVSEDDFNDVKSG--FGEGKVV 731

Query: 416  VFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY- 472
              R+  V  +++R+ V   K      LA L+  A      +T G +  + K    +    
Sbjct: 732  KMRITEVDYENQRL-VGSIKQASPEYLAKLNVDAVEVGETVT-GKVAAVHKEVVVLTLVP 789

Query: 473  NGVQGFAPRSELGLDPGCEPSSMYHV--------GQVVKCR--------IMSSIPASRRI 516
            +GV+     + L       P ++           G VV  +        +   +  S++ 
Sbjct: 790  SGVRALLSLAVLAAMRSTTPEALLETLEEDQEIDGLVVSVKNPAKGIVIVADKVRESKKA 849

Query: 517  NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG-YSKGTIPTEHLADHLE 575
            N     +    +    VK G++V G V +   +  +  V+A G  ++ T+    LAD   
Sbjct: 850  N-----EGASSTTSGQVKQGAVVQGRV-IQKNDKYLDCVVALGTATRATLQMTDLADDFS 903

Query: 576  HATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLIN---SAQQLPSDASHIH---PN 628
                + S   PG      +V L     + ++S + S +N   SAQ +  + + I      
Sbjct: 904  ANITLPS---PGQTLQCYIVSLKPNGKSAVISTRPSRVNPSTSAQIVDPEITSISDLIKG 960

Query: 629  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
              + G+V  I   G FV    +L       +  D    D    + VGQ V   ++DVN+ 
Sbjct: 961  QKIRGFVKAITNVGLFVNVGRKLDARVQVRELFDEFVRDWKTRFRVGQLVEGTVMDVNAH 1020

Query: 689  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
            +  + LSLK     ST  S         E+     +  H+    K +  F +G  ++G V
Sbjct: 1021 SNEVELSLK-----STPGSIKPRAEREAER-----AQAHDAKRPKRLTDFSVGDKVKGFV 1070

Query: 749  HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 801
                DFGV V   + ++V G    ++L+    +        G  ++A +L + + ++ + 
Sbjct: 1071 KNVIDFGVFVQI-DGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRINEEKKKIS 1129

Query: 802  LSLKTVFID 810
              LK  + D
Sbjct: 1130 FGLKPSYFD 1138


>gi|443696428|gb|ELT97129.1| hypothetical protein CAPTEDRAFT_227890 [Capitella teleta]
          Length = 1324

 Score =  214 bits (546), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 271/1130 (23%), Positives = 490/1130 (43%), Gaps = 139/1130 (12%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANEDNL-----LPTIFH 54
            + G +  V + +L +  P  L G+        A   +L+   + +   +     L  +FH
Sbjct: 93   VMGCIKNVLDYELKVQFPNNLSGIVPITGLCSAYQELLELAAKGDTSRMEELVTLQDLFH 152

Query: 55   VGQLVSCIVLQLDDDKKEI--GKRKIW---LSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
             GQ V C+V    + ++ I  G+ KI    L+L    + + +S   ++ GM L  +V S 
Sbjct: 153  PGQFVVCLV----ERERSILEGESKITPAKLTLDPRQVNREISSTGLKSGMTLHGFVSSC 208

Query: 110  EDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR------KVVYLS 163
            EDHGY++  G+     FLP+ +   +    +  G  L  +V +++         ++V + 
Sbjct: 209  EDHGYLIDIGVAKVKAFLPKADANRHFKDGLHIGSYLHCLVTNVNAEAMTSGDVRMVTID 268

Query: 164  SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 223
             DP   SK   +    I++  L+PGM ++  VQ + +NGV++ FL  F G+V   HL N 
Sbjct: 269  IDPKKTSKSSIRADMEINLRTLLPGMSMNVSVQKVADNGVVVKFLE-FQGSVHEKHLMNK 327

Query: 224  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYD 278
                   +DY++ ++  AR+L++ P ++ V LT   + +   A       S +KVG    
Sbjct: 328  L------SDYSEKQEFRARVLYLQPVTKVVVLTQLKHFVEVDALAASQLFSQMKVGTDIA 381

Query: 279  QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 338
             + V ++++         S   +   +   + + +E    +E K+  GS    R++GF +
Sbjct: 382  DAAVTKLNKWGAYF----SFGENVQGFARKALLTDENKTPVESKFTVGSKHLCRVIGFNY 437

Query: 339  LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHM 397
            ++ +     K S  +   F   ++ PG  V   V    S   + VQ   G++      H 
Sbjct: 438  VDNMVLLTAKESDVKRPYFHLENLNPGDKVDAVVTKHLSKDTVQVQVGVGLRGFIHRLHN 497

Query: 398  SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 455
            ++       KKF +G+ +  R+L V  + K + +T K   +K  L +++S+ ++T   I 
Sbjct: 498  ADVPTSHIDKKFPIGSSIKCRILSVDYEKKALNLTCKGRQLKPSLPLITSFEQSTRGTIA 557

Query: 456  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515
             G I  I+  GC V F+NGV+GFAP   L LD     + ++ +GQ++KCR+         
Sbjct: 558  EGCIVDIQSKGCLVVFFNGVKGFAPAGHLNLDEDTLVTDVFFLGQMIKCRVFRPKDDING 617

Query: 516  INLSFMM-------------------KPTRVSEDDLVKLGSLVSG----VVDVVTPNAVV 552
            + +SF +                   K T   E  +V+      G     VDV +P A +
Sbjct: 618  MLVSFKLDGDDENNQKKTASNKKEQKKRTGKVECKIVECRVKTVGEESLEVDVASPKATL 677

Query: 553  VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSL 611
                       ++  EHL DH+   ++ + +++  +  DQ+ VL   +   L +SAK SL
Sbjct: 678  -----------SLCHEHLTDHV---SLGRPLLRSYHAGDQIKVLMWKDDYGLHISAKPSL 723

Query: 612  INSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 669
            I+S ++   P     I   ++++G+V  + +    V+    LT    +  A D   + L 
Sbjct: 724  IHSLEKPSYPKTYQDIEDGNILNGFVQALQDDRILVKLFNGLTVGVHKKFASDEPVSSLP 783

Query: 670  KTYYVGQSV----RSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAML 722
                +GQ++    R ++L    + G++  SL+ S     +      + E FL + +  M 
Sbjct: 784  DLLTLGQTLSVCFRGDVL----KNGQLARSLRFSHLYKEERPTGDDILESFLSDYQRVMS 839

Query: 723  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT------HHQLA 776
               K   +  K +  + IG V+   +  S D GV    E+   V GF T      H    
Sbjct: 840  AMKKSKDAVEKKLAKYHIGQVVTVTIEASRDIGVTCVTED--GVKGFATLQSINEHDDDE 897

Query: 777  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 836
                  G  +QA +L V    + ++LSLK         A S++ A+K       S  +  
Sbjct: 898  DRKFTVGESVQAVVLYVDPLTKCLELSLKK----STYHAVSSKNAEK-------SLKVLP 946

Query: 837  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASV--SDYNTQKFPQKQFLNGQSVIATVMAL 894
            +Q + A V ++KE+++++ L E  H++G  +   +  N   F +K   N  ++     A+
Sbjct: 947  NQVIRAEVLLIKEDFVLVLLHE--HALGRMAFLPAMRNFNDFLEK---NLYTIGQVNQAV 1001

Query: 895  PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 954
              S T   +L  L+   E    ++      S   +G   +A +T  K  ++ +K G    
Sbjct: 1002 IKSVTPNGILANLQLHQEKRLQTA-----PSLITLGKKCKAIVTGFKAQQVNVKVG-KHE 1055

Query: 955  GRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1012
            GRIH+T + D  D   ++ N FS     Q V  R I     P   K    E + K S+L+
Sbjct: 1056 GRIHVTNIADSVDDGTLLRNRFSE---KQVVEVREITNQKSPVGMK----EYTTKESLLS 1108

Query: 1013 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
              +  + ++      S+  R+ G+V KV      + I  + K ++ +  S
Sbjct: 1109 TDDTSASVVH-----SVNDRIVGFVNKVSKNGLQVFIDANTKTRVSLAHS 1153


>gi|401409816|ref|XP_003884356.1| hypothetical protein NCLIV_047560 [Neospora caninum Liverpool]
 gi|325118774|emb|CBZ54325.1| hypothetical protein NCLIV_047560 [Neospora caninum Liverpool]
          Length = 3075

 Score =  214 bits (545), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 155/522 (29%), Positives = 259/522 (49%), Gaps = 61/522 (11%)

Query: 1323 QSEINNLSNLHVGDIVIGQIKRVESY--GLFITI------------ENTNLVGLCHVSEL 1368
            Q +   L  L  GD+V G++ +++      +I++            E  +L+ L      
Sbjct: 2560 QEKRARLQRLQKGDLVRGRVTKIDRAQGKAWISLDAEVFDSEEGASEEEDLLALAGEESS 2619

Query: 1369 SED--HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1426
             ED   +D      +  + ++V      ++K+    G K    ++++       +  +DE
Sbjct: 2620 DEDMTGLDRPHATRKNRQAMEVDFEDEGRKKKHREAG-KQEGSEDESPGAVDGGDSSADE 2678

Query: 1427 AIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD 1486
              E  GS++        S    +    + +GG    A  ES   +   E  LD  QPD++
Sbjct: 2679 GEEAGGSWSAGISASAHSWGWSETGPSANEGG----ANGESDVLMSDSEGELDTTQPDLN 2734

Query: 1487 NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVR 1546
            +    ++  +  A+   E+  R  +++ +   +   R+  E       PR+P++FERLV 
Sbjct: 2735 DADEDDEKKSKAARRRHEEEARRQEEETRRLEDNAGRSWMED------PRSPEDFERLVL 2788

Query: 1547 SSPNSSFVWIK--------------------YMAFMLSMADVEKARSIAERALQTINIRE 1586
             + NS+ VWI+                    YMA+ L + +++ AR +AERA+Q IN RE
Sbjct: 2789 VNGNSAAVWIRQVEISGDSAHAESRRRQAMNYMAYYLKLNELQMARQVAERAIQHINYRE 2848

Query: 1587 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1646
            E E+ ++W+AY NLE  YG+     V ++F+RA+QY D KK+H  +  +YE+  Q   A 
Sbjct: 2849 EQERSSVWIAYLNLECVYGD----RVDEIFKRAVQYNDSKKIHYQMTFIYEKARQLDKAR 2904

Query: 1647 ELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAIL 1704
            ++  K  +KF  S K+W+R +  L         A  ++ +AL  LPR KHI+F++  A L
Sbjct: 2905 QMCEKCCEKFPESQKMWVRHLTLLYTALDAASAARDLMLQALFRLPRRKHIEFVATCARL 2964

Query: 1705 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--------GDVDLIRGLFERAI 1756
            E+K+G  +RG++ FE +L+E+PKRTD+WS Y+D  I           ++  IR LFER  
Sbjct: 2965 EYKHGSKERGQTYFEKLLAEHPKRTDIWSQYVDAHIAAHTPPRCVPANLQSIRVLFERTT 3024

Query: 1757 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            SL L  +KMKF F ++L +EK  G  E    V+ KA ++V+S
Sbjct: 3025 SLQLKLRKMKFFFTRWLGFEKQHGTAETQARVRAKARQFVQS 3066



 Score = 68.2 bits (165), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 153/374 (40%), Gaps = 118/374 (31%)

Query: 1155 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR----------TVRGTF 1204
            VH  E+ +  VSDP+   D            GQ VK K+L I++            R   
Sbjct: 2264 VHVAEVLDDWVSDPVKRLD---------LKVGQAVKVKILPIAQRGENGRTDKTASRSGL 2314

Query: 1205 HVELSLRSSL----DGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
             +E SLR S     +G+ S    S DL +D         + E+L     V G V +    
Sbjct: 2315 PLEASLRLSQVEAKEGLRSDALRSGDLRSDA-------LRFENLEVGQEVSGLVVSSGQA 2367

Query: 1259 GCFIMLSRKLDAKVLLSNL--SDGYVESPEKE--------------------------FP 1290
            G F+ +SR L  ++ L  L   +    +P K                           FP
Sbjct: 2368 GVFVAVSRSLTLRIKLQKLLSENAGATTPAKTRGTEAAESPAGVVASRLVTGDEAKALFP 2427

Query: 1291 IGKLVAG-RVLSVEPLSKRVEVTLK------------------TSDSRTASQ-------- 1323
            +G+LV   R+++++P ++R+E +L+                  T +S  A Q        
Sbjct: 2428 VGRLVQNIRIVALDPETRRIEGSLRPSSVKKRTDGEGADGTGETGESAKAHQKDEKARPG 2487

Query: 1324 ---------SEINNLSN-----LHVGDIVIGQIKRVESYGLFITIEN--------TNLVG 1361
                     SE    +N     L+VGD++ G+++ +E++G+F+ +E+         +L  
Sbjct: 2488 FENLTARADSEAKRTANRLLEKLNVGDVIDGRVRGLETFGVFVRLEDGEDGDQDRISLDV 2547

Query: 1362 LCHVSEL-SEDHVDNIETIYR--AGEKVKVKILKVDKEKRRISLGMKSSYFKN------D 1412
            LCHVSE+   D  +    + R   G+ V+ ++ K+D+ + +  + + +  F +      +
Sbjct: 2548 LCHVSEMGGNDWQEKRARLQRLQKGDLVRGRVTKIDRAQGKAWISLDAEVFDSEEGASEE 2607

Query: 1413 ADNLQMSSEEESDE 1426
             D L ++ EE SDE
Sbjct: 2608 EDLLALAGEESSDE 2621



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 48/173 (27%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGL---------------------ARA-ADALDPILDNE 40
           L GVVAE++  +L++ LP G+ G                       RA ++A D   D  
Sbjct: 148 LLGVVAEIHANELIVHLPYGMMGYVPRTQAQEATPGSTPGASASYGRAVSEAEDFEGDAT 207

Query: 41  IEAN------------EDNLLP-TIFH-VGQLVSCIVLQLDDDKKEI-----GKRK---- 77
            EAN              N+LP T  H VGQ+V  +VL    + + +       R+    
Sbjct: 208 WEANAARGRGSKAAGGHPNMLPLTRSHFVGQIVQTVVLGGGREGRNVEGEGDAHRRSPQS 267

Query: 78  ---IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL 127
              + LSLR SL   GLSL+ +   MV+ A + ++E+HGY+L FG+   +GFL
Sbjct: 268 SSVLLLSLRPSLFNAGLSLDALAPSMVVPASIAAVEEHGYMLSFGVHELSGFL 320


>gi|340518409|gb|EGR48650.1| hypothetical protein TRIREDRAFT_78062 [Trichoderma reesei QM6a]
          Length = 1799

 Score =  214 bits (544), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 313/1278 (24%), Positives = 525/1278 (41%), Gaps = 149/1278 (11%)

Query: 5    GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE---------------DNLL 49
            G V  +N+  + + LP  L G A    A+   L + +E                  D  L
Sbjct: 149  GQVMRINKLSVEVSLPNNLMGHASIV-AISSQLTSRLEGGATEEGDSEEDESSDETDVNL 207

Query: 50   PTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
             ++F VGQ V   VL   D      GKR+I LSLR +    GL  + V     + A V S
Sbjct: 208  KSMFKVGQYVRAYVLSTKDTATGGKGKRRIELSLRPNEANSGLETDDVVPNSTVMASVVS 267

Query: 109  IEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSD 165
            +E+ G ++  G+P   GFLP   +  +  ID   ++PG +    V     + K+  L+  
Sbjct: 268  VEERGCVMDLGMPGLNGFLPNGEI--DPLIDQERLQPGAVFLCQVTG-KGSNKIAQLTLK 324

Query: 166  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 225
             D V           +I+  +PG +VS  V      G+    +     T D+ H      
Sbjct: 325  QDKVGSTKAFPADATTINTFLPGTLVSVLVSDNEGRGLAGKIMGTLDATADLIHSGIGPN 384

Query: 226  TTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLH------------NRAPPSHV 271
              + K+ Y    KV ARI+   PT++   VG++L P++L              + P   +
Sbjct: 385  NVDLKSKYKVGSKVKARIICNFPTAKDPKVGVSLLPHILSLTQKRQDADTEVTKRPLEVL 444

Query: 272  KVGDIYDQSKVVRVDRGLGLLLD--IPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEG 326
             +    ++  V  V+  +GL +D  IP        +V IS V + +V  L +    YK G
Sbjct: 445  PISSFVEKCTVRHVEADIGLFVDTGIP----GLGGFVHISRVKDGKVDALYESSGPYKVG 500

Query: 327  SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGAI 381
            +  R R++G+  ++GL +   + S  E       DV  G VV G++  +        G I
Sbjct: 501  TVHRGRVVGYNEMDGLFSISFEKSLLEQQYIRLEDVPIGSVVNGEIEKLVIKEQGVTGLI 560

Query: 382  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSK 439
            ++   G+       HMS+  +  P KKF+ G ++  RVL +   R  + +T KKTLV S+
Sbjct: 561  IKIADGMSGFVSENHMSDIRLQHPEKKFREGMKVKARVLSLNFSRRQLRLTLKKTLVNSE 620

Query: 440  LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 499
              ++ SY + +  + T G I K++ +G  ++FY  ++GF P SE+      +P+  + VG
Sbjct: 621  APVIKSYDDVSIGMKTLGTIVKVQPNGAHIQFYGRLRGFLPVSEMSEAYIRDPTEHFRVG 680

Query: 500  QVVKCRIMSSIPASRRINLSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 552
            QVV    +   P ++R  +S        + K T +     + +G +VS  V   T + + 
Sbjct: 681  QVVSVHALEVDPEAKRFIVSCKDPGAFGLEKQTALKN---LNVGDIVSAKVTQKTEDQIF 737

Query: 553  VYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSN--LLLSAKY 609
            V ++     K  +P  HL D            I  G     L+VL+   +   ++LS K 
Sbjct: 738  VELVDSQL-KAILPVGHLTDKSSSKNQYAWKRISAGQTLSNLMVLEKYENRRAIILSQKP 796

Query: 610  SLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQ-R 665
            SL+ +AQ   L          +VV G+V NI  T  FV+F   L    P+ +   D Q +
Sbjct: 797  SLVKAAQDKTLLKSFEDAKVGAVVQGFVRNITVTAVFVQFAANLHALLPKGRLPADAQSQ 856

Query: 666  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 725
             D     Y  +S+   I+    E  RI         +  DA  ++      +      + 
Sbjct: 857  PDFGLRKY--ESIEVRIISTIPEMKRI-------LVAPADAPVVEPENKKSKSSTKTSAP 907

Query: 726  KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA------- 778
                      +G   GS  + K+    D  + V   + SDV G I   Q+          
Sbjct: 908  APE-------DGLAFGSTAQAKITSIKDTQLNVQLVD-SDVQGRIDVSQIYDKWEDIPDP 959

Query: 779  -----TVESGSVIQAAILDV--AKAERLVDLSLK---TVFIDRFREANSNRQAQKKKRKR 828
                       V++  +L V  AK  R +  S +   +V     + ++ +  A K     
Sbjct: 960  KDPLDKFNKKQVLRVKVLGVHDAKDHRFLPFSHRSAHSVLELTCKPSHLSSDAPKPISLE 1019

Query: 829  EASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQS 886
            E    L V  T  A V  V   YL ++L P     I     S D +     +  F  G +
Sbjct: 1020 E----LKVGDTHIAFVNNVTSQYLWVNLSPNVRGRISIMDASDDLSLLNDLEANFPVGSA 1075

Query: 887  VIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELR 946
            + A V A+   +   RL L  ++ + +E  +    K+  +      +  +IT++   ++ 
Sbjct: 1076 LKARVTAVDPQNN--RLDLSARSANASEAITWTSLKQNMT------LPGKITKVNERQVL 1127

Query: 947  LKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSI 1006
            +K      G +H+ ++ DD S V     S +K G  V   I+     P  K+     LS+
Sbjct: 1128 VKLSESVSGPVHLPDMADDYSTVDT---SKYKKGDIVRVSIV--DVDPSNKR---IRLSM 1179

Query: 1007 KPS--MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1064
            +PS  M + S +  K + +   ++ G  V G+V  V ++   + +   + A  F+  S  
Sbjct: 1180 RPSRIMSSTSPVVDKEITKITQLATGDIVRGFVKNVADKGLFVLLGGQVTA--FVKISNL 1237

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFI 1123
                L+E++  F I + V G V++++     L L L+    D   D T  +S ++    I
Sbjct: 1238 SDRFLKEWKDGFQIDQLVKGRVIALDAATNQLELSLKSSVVD--EDYTPPLSYND----I 1291

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
             EG IV G + K+      ++V    ++ G  H +++ +  V            D    Y
Sbjct: 1292 KEGQIVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNPVK-----------DATKLY 1340

Query: 1184 DEGQFVKCKVLEISRTVR 1201
             EG  VK +VLE+  T R
Sbjct: 1341 KEGDKVKARVLEVDATKR 1358



 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/284 (39%), Positives = 173/284 (60%), Gaps = 15/284 (5%)

Query: 1527 ERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            +R  E DA  P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR IAERA+++INI
Sbjct: 1498 DRTAELDAHGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREIAERAIKSINI 1557

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1644
            REE EKLN+WVAY NLE  YG+  ++ V  VF+RA QY D ++V+  L  +Y ++E+ K 
Sbjct: 1558 REETEKLNVWVAYLNLEVAYGS--KQTVEDVFKRACQYNDEQEVYERLASIYIQSEKLKE 1615

Query: 1645 ADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFISQT 1701
            ADEL   M+KKF   S  VW      L   K +    +A++ RA   L  H     +S+ 
Sbjct: 1616 ADELFEAMLKKFGAKSPSVWTNYAHFLHVTKNEPARARALLPRATQQLDSHNGQNIVSRF 1675

Query: 1702 AILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLFERA 1755
            A LEF+  NG  +RGR+MFEG+L+ +PK+ DLW+  LD EI +     D   +R +FER 
Sbjct: 1676 AALEFRSPNGEPERGRTMFEGLLAAWPKKGDLWNQLLDLEIGIASSSADYTAVRDVFERR 1735

Query: 1756 ISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
              +  L P++ +  F+++  +E+ +  + + + V  KA E+  +
Sbjct: 1736 TRVKGLKPQQAEKWFRRWAAWEEKLDPKGK-DKVMAKAQEWAAA 1778



 Score = 77.0 bits (188), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 113/479 (23%), Positives = 201/479 (41%), Gaps = 77/479 (16%)

Query: 972  NLFSNFKIGQTVTARIIAK---SNKPDMKKSFL--------------WELSIKP-SMLTV 1013
            +L S +K+G  V ARII     +  P +  S L               E++ +P  +L +
Sbjct: 387  DLKSKYKVGSKVKARIICNFPTAKDPKVGVSLLPHILSLTQKRQDADTEVTKRPLEVLPI 446

Query: 1014 SEIGSKLLFEECDVSIGQRV-TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1072
            S    K      +  IG  V TG    +      + ISR    ++  L  +  P ++   
Sbjct: 447  SSFVEKCTVRHVEADIGLFVDTG----IPGLGGFVHISRVKDGKVDALYESSGPYKVGTV 502

Query: 1073 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1132
             R   +G      + SI+ EK LL       Q  I  + V I           G +V G 
Sbjct: 503  HRGRVVGYNEMDGLFSISFEKSLLE------QQYIRLEDVPI-----------GSVVNGE 545

Query: 1133 ISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFV 1189
            I K++    GV GL+++I   + G V    + +I +  P     E +F       EG  V
Sbjct: 546  IEKLVIKEQGVTGLIIKIADGMSGFVSENHMSDIRLQHP-----EKKF------REGMKV 594

Query: 1190 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1249
            K +VL ++ + R    + L+L+ +L              V++    ++  +D+S  M   
Sbjct: 595  KARVLSLNFSRR---QLRLTLKKTL--------------VNSEAPVIKSYDDVSIGMKTL 637

Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1309
            G +  V   G  I    +L   + +S +S+ Y+  P + F +G++V+   L V+P +KR 
Sbjct: 638  GTIVKVQPNGAHIQFYGRLRGFLPVSEMSEAYIRDPTEHFRVGQVVSVHALEVDPEAKRF 697

Query: 1310 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1369
             V+ K  D       +   L NL+VGDIV  ++ +     +F+ + ++ L  +  V  L+
Sbjct: 698  IVSCK--DPGAFGLEKQTALKNLNVGDIVSAKVTQKTEDQIFVELVDSQLKAILPVGHLT 755

Query: 1370 EDHVDNIETIYR---AGEKV-KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1424
            +      +  ++   AG+ +  + +L+  + +R I L  K S  K   D   + S E++
Sbjct: 756  DKSSSKNQYAWKRISAGQTLSNLMVLEKYENRRAIILSQKPSLVKAAQDKTLLKSFEDA 814



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 145/327 (44%), Gaps = 37/327 (11%)

Query: 143  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
            G  L+  V ++D     + LS+     S+ +T     +  ++ +PG     ++  + E  
Sbjct: 1073 GSALKARVTAVDPQNNRLDLSARSANASEAIT--WTSLKQNMTLPG-----KITKVNERQ 1125

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            V++      +G V +  + + + T +  + Y +   V   I+ VDP+++ + L++ P  +
Sbjct: 1126 VLVKLSESVSGPVHLPDMADDYSTVD-TSKYKKGDIVRVSIVDVDPSNKRIRLSMRPSRI 1184

Query: 263  HNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
             +   P         + +  GDI         D+GL +LL    T     A+V IS++++
Sbjct: 1185 MSSTSPVVDKEITKITQLATGDIVRGFVKNVADKGLFVLLGGQVT-----AFVKISNLSD 1239

Query: 314  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGM 366
              +++ +  ++    V+ R++        AT  L+ S    +V        +++D+K G 
Sbjct: 1240 RFLKEWKDGFQIDQLVKGRVIAL----DAATNQLELSLKSSVVDEDYTPPLSYNDIKEGQ 1295

Query: 367  VVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
            +V G V  V+ FGA  +V     V  LC    M++  +    K +K G ++  RVL V +
Sbjct: 1296 IVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNPVKDATKLYKEGDKVKARVLEVDA 1355

Query: 425  --KRITVTHKKTLVKSKLAILSSYAEA 449
              +RI    K +  + +   + S +EA
Sbjct: 1356 TKRRINFGLKPSFFEDEDTDMDSGSEA 1382


>gi|84999534|ref|XP_954488.1| pre-rRNA processing protein [Theileria annulata]
 gi|65305486|emb|CAI73811.1| pre-rRNA processing protein, putative [Theileria annulata]
          Length = 297

 Score =  214 bits (544), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 120/293 (40%), Positives = 180/293 (61%), Gaps = 21/293 (7%)

Query: 1521 EIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1577
            +IR  E+R+ +K+  R P+   +FERLV ++  SS VWI YMAF ++  D+E AR   +R
Sbjct: 2    KIRELEDRIADKEWMRNPNSVMDFERLVVTNSRSSAVWIAYMAFYINSGDIEMARKTVKR 61

Query: 1578 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1637
             L+ I+ RE  EK+N+WVAY N+E  YG    + V+++F++A+QY D K +HL ++ ++ 
Sbjct: 62   GLKAIDFREMAEKMNLWVAYLNMECIYG----DKVMEIFKQAIQYNDSKSIHLKMINIFV 117

Query: 1638 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQR---ALLSLPRHKH 1694
               Q + A E+  K IKKF  S KVWL  + RLL +  +  +A  Q     +  +P+ K 
Sbjct: 118  NNNQLEKAKEICEKAIKKFHKSKKVWLSYL-RLLYENMKDFEAGRQLHKVCITRIPQRKR 176

Query: 1695 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG----------D 1744
            I   S TA+LE+K+G  + G+  FE IL E PKR D+W+ YL   I+L            
Sbjct: 177  ILITSSTALLEYKHGSPEMGKMYFENILLENPKRMDIWNQYLTAHIKLNMDESKTQKSEG 236

Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            +  +R LF+RAI+L L PKKMK +F K+LE+E + G E+  E V++KA++YVE
Sbjct: 237  LKNVRNLFDRAITLDLKPKKMKIIFSKWLEFECAYGTEKSKESVQKKALKYVE 289


>gi|385305107|gb|EIF49101.1| part of small ribosomal subunit processosome (contains u3 snorna)
            [Dekkera bruxellensis AWRI1499]
          Length = 344

 Score =  213 bits (542), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 109/266 (40%), Positives = 170/266 (63%), Gaps = 4/266 (1%)

Query: 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1593
            AP +  +FERL+  +PNSS +WI+YM+F L + ++EKAR I +RAL+TIN REE+EK+N+
Sbjct: 75   APESVSDFERLLLGNPNSSIMWIQYMSFQLQLGEIEKARKIGDRALKTINYREESEKMNV 134

Query: 1594 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1653
            W+A  NLEN +G   E+ +   F RA QY D   +H  L  +Y  +++ + AD +   + 
Sbjct: 135  WIALLNLENMFGT--EDTLKDTFTRACQYMDAYTMHRKLASIYISSDKFEEADSMFKVIC 192

Query: 1654 KKFKHS-CKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1711
            KKF +    VW+   + L+++ + +    V+ +AL  L +  H++ + + A LEF  G  
Sbjct: 193  KKFGYDHVIVWVAYGRFLIERSKPDEAHQVLAKALQVLTKRSHVEVVRKFAQLEFSEGDP 252

Query: 1712 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771
            ++GRS+FEG+LS+ PKR D+W++Y+DQEI+ G  + +  LFER  +  L  K+ KF F K
Sbjct: 253  EQGRSLFEGLLSDVPKRLDIWNVYIDQEIKNGXKNKVEDLFERVSARKLTKKQAKFFFGK 312

Query: 1772 YLEYEKSVGEEERIEYVKQKAMEYVE 1797
            +L YE   G+E+  +YVK KA EY +
Sbjct: 313  WLSYEGKNGDEKASDYVKAKAAEYAQ 338


>gi|330794746|ref|XP_003285438.1| hypothetical protein DICPUDRAFT_29294 [Dictyostelium purpureum]
 gi|325084613|gb|EGC38037.1| hypothetical protein DICPUDRAFT_29294 [Dictyostelium purpureum]
          Length = 812

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 155/559 (27%), Positives = 270/559 (48%), Gaps = 46/559 (8%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLAR---AADALDPILDNEIEANEDNLLPT------ 51
           M + G    V+E D+ I LP GL+G  +    +D+    +   +E  E+N+  T      
Sbjct: 159 MVVLGSFESVSEIDITISLPFGLKGYIKFNEISDSFTEWMKKTLEREEENVKSTNFRKMK 218

Query: 52  --------IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 103
                   +F+ GQ++   +    D     G   +  S+R  ++  G S+ET  E M + 
Sbjct: 219 IISDQVRKMFYKGQIIKVAIAGFTDHHTIEG---LHCSMRPEVVNSGSSMETFTENMTIH 275

Query: 104 AYVKSIEDHGYILHFGLPSFTGFLPRNNL-------AENSGIDVKPGLLLQGVVRSIDRT 156
             V+SIED GYI+ FG   +TGF+  +N         +    D+  G  ++ ++ SID+ 
Sbjct: 276 GAVQSIEDKGYIVSFGSKDYTGFIEFSNTNYYYPGQTDEKQNDLFVGQPIEALIDSIDKD 335

Query: 157 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
            K   L+     VS+   KD   I++D +  GM+V T+V +++  G+ L FL +F G V+
Sbjct: 336 TKTFKLTLSHSLVSRATVKDSSVITMDSIKAGMLVETKVIAVIGGGLHLGFLDFFAGDVE 395

Query: 217 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL-HNRAPPSHVKVGD 275
           + HL N  P  N+K++ N    V ARI+FVD  ++ +GL+  P+++ +   P    K G 
Sbjct: 396 LLHLNN--PLDNYKDNQN----VKARIIFVDQVNKRIGLSTLPHIMGYKPYPFGTFKKGQ 449

Query: 276 IYD-QSKVVRVDRGLGLLLDIPSTPVST-----PAYVTISDVAEEEV--RKLEKKYKEGS 327
           I+D  S  V     L ++L  PST VS+       YV I ++    V   K   ++K+G 
Sbjct: 450 IFDFNSLTVERIEPLEMILACPSTVVSSKPQTIKGYVHIEELESGVVNLNKASNQFKKGE 509

Query: 328 CV--RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 385
               + RI    +L+G+ T   +    E   F+++D++ GM+  G +  +      ++  
Sbjct: 510 AFNKKCRIKHLDYLDGMVTFTARTRELEKKFFSYNDIECGMITTGIIKYIREESVEIELA 569

Query: 386 GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAIL 443
             +  + P  H+++  I      FK+G+ +  RV+ V    KR+ +T KK+L++S+  I+
Sbjct: 570 PSIHGVVPKTHLADVAITNTSTFFKLGSTVKVRVISVDPDKKRLQLTLKKSLIQSEYPII 629

Query: 444 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 503
           +        LI+HG ITK  ++  FV FYN   G      L L P       + +G+ V 
Sbjct: 630 TDKNTTPAGLISHGIITKTTRYLVFVSFYNNSFGVVESQNLSLTPIQSVQKQFPIGRTVL 689

Query: 504 CRIMSSIPASRRINLSFMM 522
            + +SS  +   ++L+ ++
Sbjct: 690 VKSLSSDNSKPGLSLTMII 708



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 157/415 (37%), Gaps = 89/415 (21%)

Query: 1064 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1123
            Y P +  E Q    +G+ +   + SI+K+ K  +L L      +S  TV  S+      I
Sbjct: 307  YYPGQTDEKQNDLFVGQPIEALIDSIDKDTKTFKLTLS--HSLVSRATVKDSSVITMDSI 364

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ------- 1176
              G +V  ++  ++ G  GL +       G V    L N     PL  Y + Q       
Sbjct: 365  KAGMLVETKVIAVIGG--GLHLGFLDFFAGDVELLHLNN-----PLDNYKDNQNVKARII 417

Query: 1177 -FD--------------------PLSGYDEGQFVKCKVLEISR----------------- 1198
              D                    P   + +GQ      L + R                 
Sbjct: 418  FVDQVNKRIGLSTLPHIMGYKPYPFGTFKKGQIFDFNSLTVERIEPLEMILACPSTVVSS 477

Query: 1199 ---TVRGTFHVELSLRS---SLDGMSSTNSSDLSTDVDTPGKHLEKIE------------ 1240
               T++G  H+E  L S   +L+  S+      + +     KHL+ ++            
Sbjct: 478  KPQTIKGYVHIE-ELESGVVNLNKASNQFKKGEAFNKKCRIKHLDYLDGMVTFTARTREL 536

Query: 1241 --------DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
                    D+   MI  G +K +  +   I L+  +   V  ++L+D  + +    F +G
Sbjct: 537  EKKFFSYNDIECGMITTGIIKYIREESVEIELAPSIHGVVPKTHLADVAITNTSTFFKLG 596

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYG 1349
              V  RV+SV+P  KR+++TLK    ++  QSE   I + +    G I  G I +   Y 
Sbjct: 597  STVKVRVISVDPDKKRLQLTLK----KSLIQSEYPIITDKNTTPAGLISHGIITKTTRYL 652

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404
            +F++  N N  G+     LS   + +++  +  G  V VK L  D  K  +SL M
Sbjct: 653  VFVSFYN-NSFGVVESQNLSLTPIQSVQKQFPIGRTVLVKSLSSDNSKPGLSLTM 706


>gi|312088778|ref|XP_003145991.1| hypothetical protein LOAG_10419 [Loa loa]
          Length = 481

 Score =  212 bits (540), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 191/302 (63%), Gaps = 5/302 (1%)

Query: 1499 AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIK 1557
            A  I+E+N    K++ + E E+++   E ++LE +  P   ++F+RLV  +PNSS +WI+
Sbjct: 173  ADNIEEQNRPKTKEELQIEEEKKLINRERKILEANWIPDNTNDFDRLVAGTPNSSILWIR 232

Query: 1558 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1617
            Y+ F L   DVEKAR++A+RAL  IN REE+E  N+W AY NLE  +G    E++  VF 
Sbjct: 233  YITFFLEQNDVEKARAVADRALSVINFREEDEIFNVWTAYLNLEGNFGT--SESLKAVFD 290

Query: 1618 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-CKVWLRRVQRLLKQQQ- 1675
             A++  D  K++  ++ +Y+   + +  D+LL +M+K+F+H    VW    Q LL+ ++ 
Sbjct: 291  NAIKNTDALKMYKQMVKIYQNLGKIQELDDLLDEMLKRFRHDDLDVWFIYGQHLLETKRP 350

Query: 1676 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1735
            +  + ++++A+  L R  H+  +S+ A LEFK G  ++ +++FE IL+ YPK+TD+W++Y
Sbjct: 351  DKARDLMKKAINCLSRKHHVTILSRFAQLEFKFGDMEQSKTIFENILNSYPKKTDVWTVY 410

Query: 1736 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
            +D  I++G  +  R L ER  +L L   K++  FKK++  E+  G+EE+   VK++A+ Y
Sbjct: 411  IDLLIKVGKFEDARQLLERVTALKLSTHKIRLFFKKWVGLEQMHGDEEQQNNVKERALHY 470

Query: 1796 VE 1797
            ++
Sbjct: 471  LQ 472


>gi|307177534|gb|EFN66645.1| Protein RRP5-like protein [Camponotus floridanus]
          Length = 1398

 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/277 (38%), Positives = 172/277 (62%), Gaps = 3/277 (1%)

Query: 1522 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1581
            IR  EE L   + P + D+F++LV SSP+SS VW++YMA+ L   +++KAR++ +RA++T
Sbjct: 1118 IRQREEALASNEIPNSIDQFDKLVLSSPDSSLVWLQYMAYHLQATEIDKARAVVKRAIKT 1177

Query: 1582 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1641
            IN REENE+LN+W A+ NLE+ +G    E++  VF+ A+Q  D  K++  +L ++    +
Sbjct: 1178 INFREENERLNVWNAWLNLESRFGTL--ESLNDVFREAVQNNDAFKIYTYMLTVHADASR 1235

Query: 1642 NKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQ 1700
                 +L+  +I KFK   + W+      LK   +E  + ++QRAL SLP  +H+  + +
Sbjct: 1236 MIELQKLVATIIGKFKQDPETWISCGAAFLKIGLKEKSRYIMQRALQSLPASQHVNLLVR 1295

Query: 1701 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1760
             A LE K G  +R +++FE IL  YPKR D+WS Y+D  I+  ++D+ R + ERA   +L
Sbjct: 1296 FANLENKLGDKERAQTLFENILCSYPKRVDVWSCYIDCLIKSKNIDIARKVLERACFQTL 1355

Query: 1761 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            P +KMK LF K+  +E+  G  E +  + Q A +YVE
Sbjct: 1356 PVRKMKTLFTKFKNFEEKYGTPETVARIVQMAADYVE 1392



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 149/609 (24%), Positives = 287/609 (47%), Gaps = 54/609 (8%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN-----EIEANEDNLLPTI 52
           M + G ++ V+E DL+I +PGG+ G   +   +++   +L N      I++NE   LP +
Sbjct: 65  MTVLGRISRVSEYDLIISIPGGILGHVEITNLSESYTNLLQNIISTKAIQSNEFKPLPDL 124

Query: 53  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 112
           ++ G  V C V  ++      GK    LSL   L+ + +    + +   +   +KSIEDH
Sbjct: 125 YNPGDYVICYVKNINPQ----GKWLYNLSLEPQLINQNVHNSYLVKNAKIVCTIKSIEDH 180

Query: 113 GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR--KVVYLSSDPDTVS 170
           GY++  G+ S   FL   ++ +    + K    L  ++  ++      V+ LS+    ++
Sbjct: 181 GYVVDTGIASVRAFLATKDVDK----EKKYCNQLLCIINEVETANYSSVIKLSAKRKKIN 236

Query: 171 KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 230
                D+   S+D+L PG  +S  V  IL NG+ ++F     G ++  +L N        
Sbjct: 237 NVSIHDIA--SLDVLAPGTKLSLCVAKILSNGLQVTFGKNNIGYINQIYLDNPLSM---- 290

Query: 231 NDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLG 290
             Y ++ +V   +L++ PT +    +L    L +++    +  GDI  ++KV+  +   G
Sbjct: 291 --YIENMEVTGTLLYILPTVKLAYFSL----LTDKSEKEKLSKGDIIKKAKVLYKESN-G 343

Query: 291 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
           ++L+I  + +     +  ++V+ +   K+  ++K+GS  + RIL +  +E L    ++  
Sbjct: 344 IILNISESGLRGFVSLVKTNVSFD---KIPTEFKQGSTHKCRILAYNWMEHLYVCTMEDE 400

Query: 351 AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKALCPLPHMSEFEIVKPGKK 408
             +   F+ SD+  G ++   + ++D     +    G  +  + P+ H+S+  +     K
Sbjct: 401 ILKQKYFSSSDLNCGDIITVTITSIDKGSGYMHVQAGNILGFVSPM-HVSDSGL-SALNK 458

Query: 409 FKVGAELVFRVLGVKSKR-----ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
            K+G  +  RVL +K+       +  T K++L+KSKL +L    +A   L  HG ITKI+
Sbjct: 459 MKIGDSIEARVLDLKTSNDNNVNVIFTLKQSLIKSKLPVLHDIHKAQCGLEYHGTITKID 518

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
           K+G  VRFY  ++G+  RS L        +  Y +GQ +   I S       I L  + +
Sbjct: 519 KNGLLVRFYGNIRGWVSRSTLN-SKTHNMNWNYSIGQTITVCIES--IEKYEIKLKIVTE 575

Query: 524 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV-IAKG----YSKGTIPTEHLADHLEHAT 578
             +   ++   +G ++ G   V+  +   VY+ I +G     +   +P  H+A  +E  +
Sbjct: 576 KQKQQTENF-SIGEMIEGT--VIESSIKGVYLRIHRGNDENVTTAFLPAGHIAPCIEIGS 632

Query: 579 VMKSVIKPG 587
           ++ S   PG
Sbjct: 633 LLASKYNPG 641



 Score = 46.2 bits (108), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 30/220 (13%)

Query: 597 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 656
           ++ + N++ + K SLI S   +  D          HG +  I + G  VRF G + G+  
Sbjct: 476 NDNNVNVIFTLKQSLIKSKLPVLHDIHKAQCGLEYHGTITKIDKNGLLVRFYGNIRGWVS 535

Query: 657 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 716
           RS  ++ +  +++  Y +GQ++                     C  S +   ++   + E
Sbjct: 536 RS-TLNSKTHNMNWNYSIGQTI-------------------TVCIESIEKYEIKLKIVTE 575

Query: 717 EKIAMLQSSKHNGSELKWVEGFIIGSVIEG---KVHESNDFGVVVSFEEHSDVYGFITHH 773
           ++    +    N S  + +EG +I S I+G   ++H  ND  V  +F     +   I   
Sbjct: 576 KQ----KQQTENFSIGEMIEGTVIESSIKGVYLRIHRGNDENVTTAFLPAGHIAPCIEIG 631

Query: 774 QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
            L  +    G VI A +     +   + LS   V  +R+R
Sbjct: 632 SLLASKYNPGDVISALVFATKPS---IILSRTFVTQERYR 668


>gi|149247299|ref|XP_001528062.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146448016|gb|EDK42404.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1863

 Score =  211 bits (537), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 107/237 (45%), Positives = 156/237 (65%), Gaps = 12/237 (5%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1610 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFNLQLSEVDKAREIGERALETINYREEQE 1669

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLNIW+A  NLEN +G+  EE++ KVF+R+ QY D   +H  L+ +Y  +E+   A +L 
Sbjct: 1670 KLNIWIAMLNLENTFGS--EESLEKVFKRSCQYMDSFVMHQKLVNIYIMSEKYDAAQDLF 1727

Query: 1650 YKMIKKF-KHSCKVWLRRVQRLLKQQQE--GVQAVVQRALLSLPRHKHIKFISQTAILEF 1706
              M+KKF K     W+     LL Q+++   V  ++ RAL +LP+  HI+ + + A LEF
Sbjct: 1728 KVMVKKFGKEHVSTWVLYASFLLDQEEQLTKVHELLSRALQALPKRDHIEVVRKFAQLEF 1787

Query: 1707 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-------IRGLFERAI 1756
              G A++ RS+FEG++++ PKR DLW++Y+DQEI+L D D        IR LFER I
Sbjct: 1788 AKGDAEQARSLFEGLIADAPKRIDLWNVYIDQEIKLHDKDEGEDNVLNIRDLFERVI 1844



 Score =  185 bits (469), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 184/697 (26%), Positives = 322/697 (46%), Gaps = 53/697 (7%)

Query: 43  ANEDNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEG 99
           A E  L P   ++F VG  +   V++ D+ +K   KR+I LSL   L+   +  E +  G
Sbjct: 315 AKEKKLFPDLKSMFQVGSWLKAKVVESDNSQK---KRRIELSLEPKLVNANIEDEDLIPG 371

Query: 100 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRT 156
            V+   VKS+EDHG IL  G   F+ F+    L +N+G++   ++ GL+L  V+ S    
Sbjct: 372 NVILCAVKSVEDHGVILDTGFEKFSAFMSNKEL-KNAGLEPASLQEGLVLSCVLVSQPSG 430

Query: 157 R----KVVYLSS--DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 210
           R    K V L++   P  VS          S+D + PG++V+  V  I   G++      
Sbjct: 431 RIITVKPVSLAAGKKPAVVSTIT-------SVDSIQPGILVNALVSDITSEGIITRVFGL 483

Query: 211 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAV------GLTLNPYL 261
             GT+ I  +QN F T + K+ Y     +  RIL +   + T + +       ++L+ + 
Sbjct: 484 VDGTISIAQIQN-FNTADLKHKYAIGSTIKTRILAILEKEGTKKLLLSMLPTTMSLDNHQ 542

Query: 262 LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 321
             N+       +G I+D+ +V+ +D+   + ++  S   S    +  S++  +   K   
Sbjct: 543 KQNQEALEAYPIGFIFDEVEVLGLDKSY-VYVNFGSK--SLFGQIHNSNLGGD---KSLL 596

Query: 322 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSF 378
            Y  GS  + R+LGF  ++ L                  D+  G  +   +V+ V  D+ 
Sbjct: 597 NYSVGSKHKARVLGFNTVDNLLVLTFDDKIINAEYLNVRDIPLGAFLPNCEVVKVLPDNG 656

Query: 379 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK- 437
           G  V+       L P   MS+ ++V P +KF+ G+++  R+L  + K   +T +K LV  
Sbjct: 657 GLSVKINDEFMGLVPFNQMSDIKLVYPERKFRAGSKVKGRLLTHRGKTPLITLRKALVNL 716

Query: 438 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 497
               I+  + +A     T+  + K    G  V F+  ++ F P++E+      + S    
Sbjct: 717 EDDEIILQFEDAKVGFKTNATVEKFIHGGAIVSFFGSLRAFLPKTEISETFVDDASKFLK 776

Query: 498 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG-----VVDVVTPNAVV 552
           +GQ+VK +I+      +R+ ++ M + + +S+    ++  L+SG      + V   N  V
Sbjct: 777 LGQIVKVKILDIKEDQKRVVVT-MKQSSELSDAQKTEISQLLSGRSIINAIVVEKKNNAV 835

Query: 553 VYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYS 610
           +  +     +G I    L+D + E    M   ++   +   L++  D ++  ++ +AK S
Sbjct: 836 LIELEGSNLRGVINDGQLSDGNYEQNRAMFKKLEISSKIRALVLEKDLKARTIIATAKKS 895

Query: 611 LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
           +I +A++  LP D   I PN VV GYV ++   G FV F GRLTG      A      DL
Sbjct: 896 MIEAAEKNALPIDFDDIQPNKVVKGYVKSVTNLGLFVSFTGRLTGLVLAKYATANANEDL 955

Query: 669 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
           SK ++  QS+   +L V++E  R  L+L  S   S D
Sbjct: 956 SKKFHKYQSLTCRVLSVDTENKRFLLALLNSTNDSGD 992



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 53/358 (14%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI-----DVKP-GL 144
            L L+ +     L  +V +I D G++     PS  G +   +L  +  +     +  P G 
Sbjct: 1115 LKLDDITLEQELLCFVNNI-DRGFVWVSISPSVRGRISFMDLTNDGSVFQGFENKYPIGT 1173

Query: 145  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL----E 200
             +Q  V++ID+  K + L S  + VSK     ++ + I    P  +V  +   +L    +
Sbjct: 1174 AIQAKVKNIDQEHKSLSLISRDNHVSK-----VEDVQIGQTYPARIVKVKDSYVLVDLGD 1228

Query: 201  NGVMLSFLT-----YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 255
              +  SF+T     Y      +FHL          N+Y     V A++L +D  +  + +
Sbjct: 1229 KVIASSFITDALNDYSDKLAHVFHL----------NEY-----VAAKVLDIDVENNKIAV 1273

Query: 256  TLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTIS 309
             L        A    +   D   + +VV+     G + +I S  V         A V +S
Sbjct: 1274 MLRNEESSAAASDKTINSVDDLSRGQVVK-----GFVKNIASNGVYVSLGRCVHALVRVS 1328

Query: 310  DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGM 366
            D+++  ++  +K +K    V  +I+  +  +G     LK S   G   ++  + D+  G 
Sbjct: 1329 DLSDSYLKDWKKFFKPAQSVIGKIINCKE-QGKVLMTLKESEVNGDLKILKNYDDLVVGE 1387

Query: 367  VVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            V +G V  V  FG  V+  G   +  LC    +SE ++      F  G  +  ++L V
Sbjct: 1388 VFEGTVTKVTDFGVFVKLDGTINISGLCHHSEISENDVSNIASLFGEGDRVKVKILKV 1445


>gi|440466088|gb|ELQ35374.1| rRNA biogenesis protein RRP5 [Magnaporthe oryzae Y34]
 gi|440482704|gb|ELQ63171.1| rRNA biogenesis protein RRP5 [Magnaporthe oryzae P131]
          Length = 1808

 Score =  211 bits (536), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 117/275 (42%), Positives = 173/275 (62%), Gaps = 11/275 (4%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L+ + P+T  +FERL+   PNSS +WI YMAF + ++++ KAR +AERA+ TIN+REE E
Sbjct: 1515 LDANGPQTAGDFERLLLGQPNSSALWIAYMAFHMQVSELAKAREVAERAINTINVREETE 1574

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLN+W+AY NLE  YG   +E++ +VF+RA QY D  +VH  L  +  ++ ++  ADEL 
Sbjct: 1575 KLNVWIAYLNLEVAYGT--DESLDEVFKRACQYNDDLEVHERLASICIQSGKHDKADELF 1632

Query: 1650 YKMIKKF-KHSCKVWLRRVQRLL---KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1705
              M+KKF   S KVWL     L    K    G +A++ RA+ SL  H H++  S+ A LE
Sbjct: 1633 QAMVKKFGSKSPKVWLNYAHFLYTSAKSPDRG-RALLPRAMKSLGSHAHLELASKFAGLE 1691

Query: 1706 FK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAI-SLSLP 1761
            F+   G  +RGR++FEG+LS YPKR DL    LD E+  G D  ++R +FER   +  L 
Sbjct: 1692 FRCPGGDPERGRTVFEGLLSTYPKRLDLRGQLLDLEVAAGSDKAVVRDVFERGTKAKGLK 1751

Query: 1762 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            PK+ K  F+++ ++E++ G+ +  E V  KA E+ 
Sbjct: 1752 PKQAKKWFQRWAKWEEANGDAKSREKVSAKAQEWA 1786



 Score =  207 bits (526), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 287/1198 (23%), Positives = 507/1198 (42%), Gaps = 130/1198 (10%)

Query: 49   LPTIFHVGQLVSCIVLQLDDDKKEIG---KRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
            L +I  VGQ V   V+   ++    G   KR+I LSL+  L   GLS   V E   +   
Sbjct: 224  LTSILSVGQYVRAYVVSTMEEPSTAGAKGKRRIELSLQPELANTGLSSADVVENSTVAGS 283

Query: 106  VKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKPG----LLLQGVVRSIDR----T 156
            + S+EDHGY++  G+ + TGFL +  + +  S   ++PG    LL+ GV   I +    T
Sbjct: 284  ISSVEDHGYVVDLGIQNLTGFLSKKEVDKGISAAQLEPGCVHLLLVTGVKGKIAQVSTLT 343

Query: 157  RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
            +K+  +   P T            +I+  +PG  V   V  I   G+    +     T D
Sbjct: 344  KKLSNVQLFPGTAK----------TINTFLPGTAVDVLVSDISGRGLAGKVMGSLDVTAD 393

Query: 217  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYL--LHNR------- 265
            I H        N +  Y    KV AR++   PTS    +G++L  +L  L  R       
Sbjct: 394  IIHSGLGPNGVNLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGK 453

Query: 266  -APP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 322
              PP + +    I +Q  V +V+  +GL +D     V  P +V IS V + +V  L +  
Sbjct: 454  EVPPLTALPHSSIVEQCTVTKVEPDIGLFVDTGIEGV--PGFVHISRVKDGKVDALYEAS 511

Query: 323  --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV----KGKVIAVD 376
              YK GS  R RI+G+  ++G+     + S  E       DV    VV    +  ++  D
Sbjct: 512  GPYKTGSVHRGRIVGYNSMDGMYHLSFEKSILERQYLRIEDVPIAEVVNVTIEKMIVKED 571

Query: 377  SF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKK 433
               G IV+   G+    P  H+++  +  P KKF+ G ++  RVL V   +  + +T KK
Sbjct: 572  GLSGVIVKLADGITGFVPEMHLADIRLQHPEKKFREGLKVKARVLSVDPAKNQLRLTFKK 631

Query: 434  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 493
            TLV S+ A +  + EA+      G I KI+  G FV+FY  ++GF P  E+      +P+
Sbjct: 632  TLVNSEAAPIKDFGEASVGQQVQGTIVKIKPIGAFVQFYGTLRGFLPIGEMSESFIRDPN 691

Query: 494  SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPN 549
              +  GQVV   ++S  P  RR+ +S         E  +    +K+G LVSG V   + +
Sbjct: 692  EHFRTGQVVNVHVISVDPERRRLVVSCKDPAAFGVEKQMALQKLKVGDLVSGSVTEKSED 751

Query: 550  AVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESS--NLLLS 606
             V +  +     K  +   HL D          S I+ G   + L+VL+ +    +++LS
Sbjct: 752  NVFLE-LKDSSLKAVLRAHHLTDKSPSKNQSALSKIRVGQTLEDLVVLEKDEGRRSIVLS 810

Query: 607  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
             K SL+ ++Q  Q  +  +      +V G+V NI  T  FV+F G LT   P+S      
Sbjct: 811  LKPSLVKASQNGQFLTTLADAKVGKLVQGFVRNITPTAVFVQFGGNLTALLPKSMISTQN 870

Query: 665  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--------------CCSSTDASFMQ 710
            +A       + Q++   +  V  E  R+ +S+  +                ++ DAS   
Sbjct: 871  QALEDFGLRLHQAIEVKVHSV--EDKRLVVSMPDAEAPKDTKPRHEAKPVSNAVDASITS 928

Query: 711  EH-----FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
                    + + +IA ++ ++ N           +   ++G+V  S  F          D
Sbjct: 929  TDDISVGTVTKARIASIKKTQLN---------VALADNVQGRVDISEVF----------D 969

Query: 766  VYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQK 823
             +  IT+ +   +      +I   ++ V  A+  R +  S +T        A  +    K
Sbjct: 970  SWDEITNAKDPLSKFTQNQIIDVRVIGVHDARNYRFLPFSHRTANSVLELTAKPSSVRAK 1029

Query: 824  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQF 881
             + K  A  D+    +    V   ++ +L ++L P     I  + VSD ++  K  ++ F
Sbjct: 1030 GQYKPLAMADVKAGSSWLTFVNNNEDKWLWVNLSPAVRGRIRSSEVSDDSSHGKDLRQNF 1089

Query: 882  LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 941
              G ++ A V+A+ + +  G+L L  ++    E    +  +K       +++ A +T++ 
Sbjct: 1090 PVGTALRARVLAVDADN--GKLDLSARSARPNEHMKWEELEKD------TVMHARVTKVN 1141

Query: 942  PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1001
              ++  +        + I ++NDD  +      +  K  +    R+   S   + KK   
Sbjct: 1142 DRQVFFQISDSVAAPVQIIDLNDDYDHA-----NPLKYSKNDIVRVSVVSIDKNHKK--- 1193

Query: 1002 WELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1059
              LS + S +  SE  +  K +     +  G  + G+V  V ++   +T+   + A + I
Sbjct: 1194 LRLSARESRVLSSELPVKDKEITSVSQIEQGTILRGFVKNVSDKGLFVTLGGDVTALVRI 1253

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
             D     + L++++  F + + V G V S++K        L   Q  +    VD     +
Sbjct: 1254 SD--LSDAFLKDWKEHFQVDQLVKGRVTSVDK-------TLGHVQMSLKASAVDEDYKPL 1304

Query: 1120 QTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1175
              +  + EG ++ G++ K+      +++    ++ G  H TE+ +  V D    Y EG
Sbjct: 1305 PGYGDLKEGQVITGKVRKVADFGAFILIDKSANVSGLCHRTEMADKPVKDATKLYREG 1362



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 189/459 (41%), Gaps = 66/459 (14%)

Query: 972  NLFSNFKIGQTVTARIIAKSNKPDMKK---SFLWEL-SIKPSMLTV--------SEIGSK 1019
            NL   +KIG  V AR+I      D  K   S L  L S++P    V        + +   
Sbjct: 405  NLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGKEVPPLTALPHS 464

Query: 1020 LLFEECDVSIGQRVTGYVYKVDNEW--ALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1077
             + E+C V+  +   G       E     + ISR    ++  L  A  P +     R   
Sbjct: 465  SIVEQCTVTKVEPDIGLFVDTGIEGVPGFVHISRVKDGKVDALYEASGPYKTGSVHRGRI 524

Query: 1078 IGKAVTGHVLSINKEKKLL-RLVLRPFQDGISDKTV-DISNDNMQTFIHEGDIVGGRISK 1135
            +G      +  ++ EK +L R  LR     I D  + ++ N  ++  I + D + G I K
Sbjct: 525  VGYNSMDGMYHLSFEKSILERQYLR-----IEDVPIAEVVNVTIEKMIVKEDGLSGVIVK 579

Query: 1136 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1195
            +  G+ G V    P ++       L +I +  P     E +F       EG  VK +VL 
Sbjct: 580  LADGITGFV----PEMH-------LADIRLQHP-----EKKFR------EGLKVKARVLS 617

Query: 1196 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1255
            +         + L+ + +L              V++    ++   + S    VQG +  +
Sbjct: 618  VDPAKN---QLRLTFKKTL--------------VNSEAAPIKDFGEASVGQQVQGTIVKI 660

Query: 1256 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
               G F+     L   + +  +S+ ++  P + F  G++V   V+SV+P  +R+ V+ K 
Sbjct: 661  KPIGAFVQFYGTLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHVISVDPERRRLVVSCK- 719

Query: 1316 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDH 1372
             D       +   L  L VGD+V G +       +F+ +++++L  +    H+++ S   
Sbjct: 720  -DPAAFGVEKQMALQKLKVGDLVSGSVTEKSEDNVFLELKDSSLKAVLRAHHLTDKSPSK 778

Query: 1373 VDNIETIYRAGEKVK-VKILKVDKEKRRISLGMKSSYFK 1410
              +  +  R G+ ++ + +L+ D+ +R I L +K S  K
Sbjct: 779  NQSALSKIRVGQTLEDLVVLEKDEGRRSIVLSLKPSLVK 817


>gi|389630328|ref|XP_003712817.1| hypothetical protein MGG_05260 [Magnaporthe oryzae 70-15]
 gi|351645149|gb|EHA53010.1| hypothetical protein MGG_05260 [Magnaporthe oryzae 70-15]
          Length = 1781

 Score =  210 bits (535), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 117/275 (42%), Positives = 173/275 (62%), Gaps = 11/275 (4%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L+ + P+T  +FERL+   PNSS +WI YMAF + ++++ KAR +AERA+ TIN+REE E
Sbjct: 1488 LDANGPQTAGDFERLLLGQPNSSALWIAYMAFHMQVSELAKAREVAERAINTINVREETE 1547

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLN+W+AY NLE  YG   +E++ +VF+RA QY D  +VH  L  +  ++ ++  ADEL 
Sbjct: 1548 KLNVWIAYLNLEVAYGT--DESLDEVFKRACQYNDDLEVHERLASICIQSGKHDKADELF 1605

Query: 1650 YKMIKKF-KHSCKVWLRRVQRLL---KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1705
              M+KKF   S KVWL     L    K    G +A++ RA+ SL  H H++  S+ A LE
Sbjct: 1606 QAMVKKFGSKSPKVWLNYAHFLYTSAKSPDRG-RALLPRAMKSLGSHAHLELASKFAGLE 1664

Query: 1706 FK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAI-SLSLP 1761
            F+   G  +RGR++FEG+LS YPKR DL    LD E+  G D  ++R +FER   +  L 
Sbjct: 1665 FRCPGGDPERGRTVFEGLLSTYPKRLDLRGQLLDLEVAAGSDKAVVRDVFERGTKAKGLK 1724

Query: 1762 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            PK+ K  F+++ ++E++ G+ +  E V  KA E+ 
Sbjct: 1725 PKQAKKWFQRWAKWEEANGDAKSREKVSAKAQEWA 1759



 Score =  206 bits (524), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 287/1198 (23%), Positives = 507/1198 (42%), Gaps = 130/1198 (10%)

Query: 49   LPTIFHVGQLVSCIVLQLDDDKKEIG---KRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
            L +I  VGQ V   V+   ++    G   KR+I LSL+  L   GLS   V E   +   
Sbjct: 197  LTSILSVGQYVRAYVVSTMEEPSTAGAKGKRRIELSLQPELANTGLSSADVVENSTVAGS 256

Query: 106  VKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKPG----LLLQGVVRSIDR----T 156
            + S+EDHGY++  G+ + TGFL +  + +  S   ++PG    LL+ GV   I +    T
Sbjct: 257  ISSVEDHGYVVDLGIQNLTGFLSKKEVDKGISAAQLEPGCVHLLLVTGVKGKIAQVSTLT 316

Query: 157  RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
            +K+  +   P T            +I+  +PG  V   V  I   G+    +     T D
Sbjct: 317  KKLSNVQLFPGTAK----------TINTFLPGTAVDVLVSDISGRGLAGKVMGSLDVTAD 366

Query: 217  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYL--LHNR------- 265
            I H        N +  Y    KV AR++   PTS    +G++L  +L  L  R       
Sbjct: 367  IIHSGLGPNGVNLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGK 426

Query: 266  -APP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK- 322
              PP + +    I +Q  V +V+  +GL +D     V  P +V IS V + +V  L +  
Sbjct: 427  EVPPLTALPHSSIVEQCTVTKVEPDIGLFVDTGIEGV--PGFVHISRVKDGKVDALYEAS 484

Query: 323  --YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV----KGKVIAVD 376
              YK GS  R RI+G+  ++G+     + S  E       DV    VV    +  ++  D
Sbjct: 485  GPYKTGSVHRGRIVGYNSMDGMYHLSFEKSILERQYLRIEDVPIAEVVNVTIEKMIVKED 544

Query: 377  SF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKK 433
               G IV+   G+    P  H+++  +  P KKF+ G ++  RVL V   +  + +T KK
Sbjct: 545  GLSGVIVKLADGITGFVPEMHLADIRLQHPEKKFREGLKVKARVLSVDPAKNQLRLTFKK 604

Query: 434  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 493
            TLV S+ A +  + EA+      G I KI+  G FV+FY  ++GF P  E+      +P+
Sbjct: 605  TLVNSEAAPIKDFGEASVGQQVQGTIVKIKPIGAFVQFYGTLRGFLPIGEMSESFIRDPN 664

Query: 494  SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPN 549
              +  GQVV   ++S  P  RR+ +S         E  +    +K+G LVSG V   + +
Sbjct: 665  EHFRTGQVVNVHVISVDPERRRLVVSCKDPAAFGVEKQMALQKLKVGDLVSGSVTEKSED 724

Query: 550  AVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESS--NLLLS 606
             V +  +     K  +   HL D          S I+ G   + L+VL+ +    +++LS
Sbjct: 725  NVFLE-LKDSSLKAVLRAHHLTDKSPSKNQSALSKIRVGQTLEDLVVLEKDEGRRSIVLS 783

Query: 607  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
             K SL+ ++Q  Q  +  +      +V G+V NI  T  FV+F G LT   P+S      
Sbjct: 784  LKPSLVKASQNGQFLTTLADAKVGKLVQGFVRNITPTAVFVQFGGNLTALLPKSMISTQN 843

Query: 665  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--------------CCSSTDASFMQ 710
            +A       + Q++   +  V  E  R+ +S+  +                ++ DAS   
Sbjct: 844  QALEDFGLRLHQAIEVKVHSV--EDKRLVVSMPDAEAPKDTKPRHEAKPVSNAVDASITS 901

Query: 711  EH-----FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
                    + + +IA ++ ++ N           +   ++G+V  S  F          D
Sbjct: 902  TDDISVGTVTKARIASIKKTQLN---------VALADNVQGRVDISEVF----------D 942

Query: 766  VYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQK 823
             +  IT+ +   +      +I   ++ V  A+  R +  S +T        A  +    K
Sbjct: 943  SWDEITNAKDPLSKFTQNQIIDVRVIGVHDARNYRFLPFSHRTANSVLELTAKPSSVRAK 1002

Query: 824  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQF 881
             + K  A  D+    +    V   ++ +L ++L P     I  + VSD ++  K  ++ F
Sbjct: 1003 GQYKPLAMADVKAGSSWLTFVNNNEDKWLWVNLSPAVRGRIRSSEVSDDSSHGKDLRQNF 1062

Query: 882  LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 941
              G ++ A V+A+ + +  G+L L  ++    E    +  +K       +++ A +T++ 
Sbjct: 1063 PVGTALRARVLAVDADN--GKLDLSARSARPNEHMKWEELEKD------TVMHARVTKVN 1114

Query: 942  PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1001
              ++  +        + I ++NDD  +      +  K  +    R+   S   + KK   
Sbjct: 1115 DRQVFFQISDSVAAPVQIIDLNDDYDHA-----NPLKYSKNDIVRVSVVSIDKNHKK--- 1166

Query: 1002 WELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1059
              LS + S +  SE  +  K +     +  G  + G+V  V ++   +T+   + A + I
Sbjct: 1167 LRLSARESRVLSSELPVKDKEITSVSQIEQGTILRGFVKNVSDKGLFVTLGGDVTALVRI 1226

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
             D     + L++++  F + + V G V S++K        L   Q  +    VD     +
Sbjct: 1227 SD--LSDAFLKDWKEHFQVDQLVKGRVTSVDK-------TLGHVQMSLKASAVDEDYKPL 1277

Query: 1120 QTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1175
              +  + EG ++ G++ K+      +++    ++ G  H TE+ +  V D    Y EG
Sbjct: 1278 PGYGDLKEGQVITGKVRKVADFGAFILIDKSANVSGLCHRTEMADKPVKDATKLYREG 1335



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 189/459 (41%), Gaps = 66/459 (14%)

Query: 972  NLFSNFKIGQTVTARIIAKSNKPDMKK---SFLWEL-SIKPSMLTV--------SEIGSK 1019
            NL   +KIG  V AR+I      D  K   S L  L S++P    V        + +   
Sbjct: 378  NLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGKEVPPLTALPHS 437

Query: 1020 LLFEECDVSIGQRVTGYVYKVDNEW--ALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1077
             + E+C V+  +   G       E     + ISR    ++  L  A  P +     R   
Sbjct: 438  SIVEQCTVTKVEPDIGLFVDTGIEGVPGFVHISRVKDGKVDALYEASGPYKTGSVHRGRI 497

Query: 1078 IGKAVTGHVLSINKEKKLL-RLVLRPFQDGISDKTV-DISNDNMQTFIHEGDIVGGRISK 1135
            +G      +  ++ EK +L R  LR     I D  + ++ N  ++  I + D + G I K
Sbjct: 498  VGYNSMDGMYHLSFEKSILERQYLR-----IEDVPIAEVVNVTIEKMIVKEDGLSGVIVK 552

Query: 1136 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1195
            +  G+ G V    P ++       L +I +  P     E +F       EG  VK +VL 
Sbjct: 553  LADGITGFV----PEMH-------LADIRLQHP-----EKKFR------EGLKVKARVLS 590

Query: 1196 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1255
            +         + L+ + +L              V++    ++   + S    VQG +  +
Sbjct: 591  VDPAKN---QLRLTFKKTL--------------VNSEAAPIKDFGEASVGQQVQGTIVKI 633

Query: 1256 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
               G F+     L   + +  +S+ ++  P + F  G++V   V+SV+P  +R+ V+ K 
Sbjct: 634  KPIGAFVQFYGTLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHVISVDPERRRLVVSCK- 692

Query: 1316 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDH 1372
             D       +   L  L VGD+V G +       +F+ +++++L  +    H+++ S   
Sbjct: 693  -DPAAFGVEKQMALQKLKVGDLVSGSVTEKSEDNVFLELKDSSLKAVLRAHHLTDKSPSK 751

Query: 1373 VDNIETIYRAGEKVK-VKILKVDKEKRRISLGMKSSYFK 1410
              +  +  R G+ ++ + +L+ D+ +R I L +K S  K
Sbjct: 752  NQSALSKIRVGQTLEDLVVLEKDEGRRSIVLSLKPSLVK 790


>gi|157127501|ref|XP_001655011.1| programmed cell death protein 11 (pre-rrna processing protein rrp5)
            [Aedes aegypti]
 gi|108872936|gb|EAT37161.1| AAEL010827-PA [Aedes aegypti]
          Length = 1542

 Score =  210 bits (535), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 1500 KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKY 1558
            K ++ K    A K+E    EQ IR  E+ L +    P TPD+F+R V S PNSS +WI+Y
Sbjct: 1239 KRLNAKERFEAMKQE----EQRIRQIEDELADASVDPHTPDQFDRQVLSQPNSSLLWIRY 1294

Query: 1559 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1618
            M F +  A+VEKAR++A RAL+TIN REE E+LN+W+A  NLE  Y     E   +V Q 
Sbjct: 1295 MVFHMESAEVEKARAVARRALKTINFREEGERLNVWIALLNLELRYETV--ETFKEVLQE 1352

Query: 1619 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG- 1677
            A+QY D  KV+  ++ +     +   A +++  + K+F+   ++WL       K  Q   
Sbjct: 1353 AIQYNDAFKVYSRVIEIVIDCGKTAEALDIIDILQKRFRKQPEMWLLVGSSYYKLGQAAK 1412

Query: 1678 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1737
            V+ ++ +AL SL   +HI  I + A L  +NG  D    +FE IL+ YPKRTD+WS Y+D
Sbjct: 1413 VKPLLSKALKSLETKEHIPLIVKFAFLHNRNGERDEAHILFEQILTSYPKRTDIWSQYVD 1472

Query: 1738 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
              ++ G VD+ R   +RAI+  LP K MK L+ KY+ +E+  G+ E ++ +KQ A  YVE
Sbjct: 1473 MLVKDGLVDVARQTLDRAIAQRLPMKNMKTLYTKYVAFEEKHGDREAVKRIKQAAANYVE 1532

Query: 1798 STLA 1801
              L+
Sbjct: 1533 KQLS 1536



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 140/613 (22%), Positives = 256/613 (41%), Gaps = 40/613 (6%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG------LARA-ADALDPILDNEIEANEDNL--LPT 51
           M L G V ++ + D+ + LPG L G      ++ A  + L  ++   +   E+    L  
Sbjct: 83  MLLMGCVYKITKMDIKVSLPGRLYGTVPIMAISEAYNNRLHSLVQKSLGGPEEQCPGLEE 142

Query: 52  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 111
           ++H G LV   +     +K   G     L+L    L+  L+ + + EG+VL+A V+  ED
Sbjct: 143 LYHEGDLVYVKIKSKHSEKNHFG-----LTLDPQDLHSELTCKHLVEGLVLSATVEEEED 197

Query: 112 HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 171
           HGY ++ G+ +   FLP +N+  N  I  +        V   + +  VV  +  P    K
Sbjct: 198 HGYQMNVGIRNVRAFLPTHNVRNNKMIVGRNLFCSVEKVTHGNGSATVVLRAFKPTEPRK 257

Query: 172 CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF--PTTNW 229
               ++   ++D LVPG +V+  V+S+L+NG+  S    F  TV  F  +N    P ++ 
Sbjct: 258 L---EVAQPNVDSLVPGSVVTFTVESVLQNGLQGSL---FDDTVPAFVNENMLEKPLSSL 311

Query: 230 KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGL 289
           K  Y   K++ AR+L+V P ++ V +TL  +  +  +    V  G I   +K++      
Sbjct: 312 KQ-YELFKEIPARVLYVMPLTKHVFVTLAHFDGNRASVADPVTPGKIIQDAKIIHKSLN- 369

Query: 290 GLLLDIPSTPVS-TPAYVTISDVAEE-EVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 347
           G+   I     +  P Y+  S   +  + + +  KY+ GS   VR++ F   +       
Sbjct: 370 GVWFQIGKKHKALLPKYILKSKYNQNYDEQIVMAKYQVGSVHTVRVMRFEAFDRTIIVTD 429

Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
                E   FT +D+K G +   ++  V     + +  G + +L  L  +      +P K
Sbjct: 430 DEEKIETKYFTLNDLKVGDIYNCRITKV-----LDKKRGFLVSLDNLKGIVTAYNFEPSK 484

Query: 408 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 465
            +        R++G+   R     T+    +K    +L+S  +        G +   ++ 
Sbjct: 485 TYAANQMAKLRLIGIDEDRKMAQFTNHPEYLKKSAKLLTSREDVKQGQRFLGTVISEQEK 544

Query: 466 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
              V F N +     +    +       S    G V +  +        R  +   +   
Sbjct: 545 FFIVAFCNKITAICFKFCRAVTQDQNRISRLKPGVVDRFTVNEVSEDGSRFTVVIPLDAE 604

Query: 526 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 585
             SE+    LG +VSG +  +      +Y++ K  + GT+P E  +D   H  +  SV+K
Sbjct: 605 --SEN----LGHIVSGTITGIYATGADIYLV-KENATGTVPPELFSDFPPHNALYASVLK 657

Query: 586 PGYEFDQLLVLDN 598
            G +   + V +N
Sbjct: 658 EGEQLRVVNVKEN 670


>gi|170062256|ref|XP_001866588.1| programmed cell death protein 11 [Culex quinquefasciatus]
 gi|167880230|gb|EDS43613.1| programmed cell death protein 11 [Culex quinquefasciatus]
          Length = 1481

 Score =  207 bits (528), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 186/325 (57%), Gaps = 9/325 (2%)

Query: 1481 EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE--IRAAEERLLEKDA-PRT 1537
            +QP  D   S +    D  +   +K+   AK++ +  R++E  IR  EE L +    P T
Sbjct: 1151 QQPPSD---SSDDEENDRVEVPAKKSRLTAKERFEAMRQEEKRIRQIEEELADSSVDPHT 1207

Query: 1538 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1597
            PD+F+R++ + PNSS +WI+YM F +  A+++KAR++A RAL+TIN REENE+LN+W+A 
Sbjct: 1208 PDQFDRMLLAQPNSSLLWIRYMVFHMESAEIDKARAVARRALKTINFREENERLNVWIAL 1267

Query: 1598 FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1657
             NLE  Y     E   ++ Q A+QY DP KV+  ++ +     +      +   + K+F+
Sbjct: 1268 LNLELRYETI--ETFKEILQEAVQYNDPYKVYSKVIEVLIDCGKTAEVLGMTELLQKRFR 1325

Query: 1658 HSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRS 1716
               ++W        K   +  V+ ++ +AL SL   +HI  I + A L  +N   D    
Sbjct: 1326 KQPEMWHLIASCFYKIGNRSKVKPLLSKALKSLENKEHIPLIVKFAFLHNRNDDRDEAHI 1385

Query: 1717 MFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1776
            +FE IL+ YPKRTD+WS Y+D  ++ G VD+ R   +RAI   LP + MK LF KY+ +E
Sbjct: 1386 LFEQILTSYPKRTDIWSQYVDMLVKDGLVDVARQTLDRAIVQRLPMRNMKTLFTKYVNFE 1445

Query: 1777 KSVGEEERIEYVKQKAMEYVESTLA 1801
            +  G+ E +  +KQ+A EYVE  LA
Sbjct: 1446 EKHGDREAVRRIKQQAAEYVERQLA 1470



 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 159/624 (25%), Positives = 264/624 (42%), Gaps = 64/624 (10%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL---LPTIFH 54
           M + G V +V + +L++ LPG L G   +   + A    L + +E  E      L  ++ 
Sbjct: 83  MLVLGCVYKVQKLELLVSLPGRLFGRVPVTAISGAYGKRLQSVVEGGEGGCCPGLEELYS 142

Query: 55  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 114
           VG+LV   +   D ++      +  LSL    L+  L+ + + EG+V++A V+  EDHGY
Sbjct: 143 VGELVYVKIKGKDQER-----WRFELSLDPKELHSELNHKHLVEGLVISATVEEEEDHGY 197

Query: 115 ILHFGLPSFTGFLP----RNNLAENSG---IDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 167
            ++ G+ +   FLP    RNN  E  G     V+   L  G       T  V+  +  P 
Sbjct: 198 QMNVGIRNVRAFLPTKNVRNNRMEVGGNVHCTVEKVTLANG-------TATVILKAFKPK 250

Query: 168 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 227
            + K    D+   +ID L+PG +V+  V+SIL NG+     T F  TV  F  +N     
Sbjct: 251 ELRKL---DVAAANIDSLMPGSVVTFTVESILPNGLQ---GTLFDDTVPAFVNENMLEKP 304

Query: 228 NWK-NDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHVKVGDIYDQSK 281
             K   +   K+V ARIL+V P ++ V LTL     N Y + +  P     VG +   +K
Sbjct: 305 LSKVASFELFKQVPARILYVMPMTKHVFLTLAIGDSNRYSVADPLP-----VGTVLKDAK 359

Query: 282 VVRVDRGLGLLLDIPSTPVS-TPAYVTISDV-AEEEVRKLEKKYKEGSCVRVRILGFRHL 339
           V+      G+   +     +  P YV  S   A  + + +  KY+ GS   VR++ +   
Sbjct: 360 VMHKCSTGGVWFQLGKKHKALLPRYVLKSRYNANYDEQIVMAKYQIGSLHTVRVIRYEAF 419

Query: 340 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV--DSFGAIVQFPGG-VKALCPLPH 396
           +         +      F+  D++ G V + +V  +  D  G  V   GG VK +  + H
Sbjct: 420 DRTLIITDDDATIGSRFFSLDDLRVGDVYECRVTRILDDKRGLAVTLAGGRVKGIV-MSH 478

Query: 397 MSEFEIVKPGKKFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRL 453
              F      K++     +  R++G+   K + +   H + L KS   IL   A   D+ 
Sbjct: 479 NYRFT-----KQYAPKQSIKMRLIGIDEDKQQALFTNHPEYLRKSAKLILDRAAIKPDQK 533

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
                I++ EK    V F N +     +    +    E       G V    +       
Sbjct: 534 CLGTVISETEKF-FIVAFCNKITAILFKFCRSVTQDSERIDRLKPGSVELFTVHEVTEDG 592

Query: 514 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
            +I L   + P     D+   LG + +  +  +    V VY++ K    GT+P E L+D 
Sbjct: 593 AKITL---ILPFATGGDN---LGHVSTATITGIFATGVDVYLV-KENETGTVPPEALSDF 645

Query: 574 LEHATVMKSVIKPGYEFDQLLVLD 597
            EH  +++S ++ G +   + V D
Sbjct: 646 PEHNALVQSTLREGEKLKVVNVQD 669


>gi|315046956|ref|XP_003172853.1| rRNA biogenesis protein RRP5 [Arthroderma gypseum CBS 118893]
 gi|311343239|gb|EFR02442.1| rRNA biogenesis protein RRP5 [Arthroderma gypseum CBS 118893]
          Length = 1821

 Score =  204 bits (520), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/293 (38%), Positives = 179/293 (61%), Gaps = 26/293 (8%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L+ + P++  ++ERL+   P+SS +W+KYMAF L + +V+KAR IAERAL+T++I ++ E
Sbjct: 1526 LDANGPQSVADYERLLLGEPDSSLLWLKYMAFQLELGEVDKAREIAERALRTMSIGQDTE 1585

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLN+WVA  NLEN +GN  ++ + +VF+ A +Y D  +++  +  ++ ++ + + ADEL 
Sbjct: 1586 KLNVWVARLNLENTFGN--DDTLDEVFKGACEYNDAHEIYDRMASIFIQSGKTEKADELF 1643

Query: 1650 YKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA---VVQRALLSLPRHKHIKFISQTAILEF 1706
               +KK   S   +       L    E  Q    ++ RAL SLP H H++  S+   LEF
Sbjct: 1644 QAALKKKVSSTPDFFLNYANFLFDTMEAPQRGRDLLPRALQSLPPHTHVEVTSRFGQLEF 1703

Query: 1707 K--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS----- 1759
            +  NG  +RGR++FEG+LS +PKR DLW++ LD EI+LGD + +R LFER + +      
Sbjct: 1704 RSPNGDVERGRTVFEGLLSSFPKRIDLWNVLLDLEIKLGDEEQVRRLFERVLGIGHGVVT 1763

Query: 1760 -----------LPPKKMKFLFKKYLEYEKSV---GEEERIEYVKQKAMEYVES 1798
                       L  K+ KFLFKK+L +E+ +   G+ + ++ VK +A +YV S
Sbjct: 1764 ADGTKGGPKKKLKEKQAKFLFKKWLAFEEKIAPEGDTKMVDEVKARAADYVRS 1816



 Score =  193 bits (491), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 307/1321 (23%), Positives = 553/1321 (41%), Gaps = 148/1321 (11%)

Query: 2    KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA-------------NEDNL 48
            ++ G V+ +   D+ + LP  L G     +A+   L  ++EA             ++D  
Sbjct: 174  RILGQVSSIGLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEEDEDDDFE 232

Query: 49   LPTIFHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
            L     +GQ +   V      +DDKK   K+ I LS+       GL+   +     + A 
Sbjct: 233  LKDYVKIGQYLRASVTATTRNEDDKKVKNKKHIELSIEPHAANSGLTKADMVVNATVQAS 292

Query: 106  VKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVV 160
            V S+EDHG I+  GL      GF+    L   +G+D   VK G +   +V   + +  VV
Sbjct: 293  VISVEDHGLIMDLGLEENEAKGFISSRELP--AGVDISTVKEGSVFLCIVTGHNASGTVV 350

Query: 161  YLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 218
             LS+D  +              +I+  +PG      +  +   G++   +      +DI 
Sbjct: 351  KLSADLASAGSVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVIDII 410

Query: 219  HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV------- 271
            H   +    +    Y+   K+  R++   P+S  V L  +      +  P+         
Sbjct: 411  HSGASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLASGDDN 470

Query: 272  ---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKE 325
                + DI  + KV  VD  LGL + + ST      +V +S +A+  V  +   E +YK 
Sbjct: 471  DMPSISDIIPEVKVTYVDSSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSDEGRYKV 528

Query: 326  GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GA 380
            GS    RI+GF  ++ L +  L+    E       DV  G VVKGK+    +  +   G 
Sbjct: 529  GSTHEGRIIGFSAMDNLFSVSLEPKIIEQPFLRLEDVTVGSVVKGKIEKLLVKPEGIEGL 588

Query: 381  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS 438
            IV     +  L P  HM++ ++  P KKF+ G ++  RVL V  +R  + +T KK+L+ S
Sbjct: 589  IVSLTDNISGLVPGMHMADTKLQHPEKKFREGLKVSVRVLSVDLQRRQLRLTLKKSLLNS 648

Query: 439  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
              A   +Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + V
Sbjct: 649  DSAPWKNYESVSAGNRSPGTLIKIQNNGAIVQFYGSVKGFLPVSEMSEAYIKDPSQHFTV 708

Query: 499  GQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVV 553
            GQVV    ++    S R+ +S    P+  + D     + +  G +VSG V   + + +++
Sbjct: 709  GQVVNVHALTVDAESERLVVS-CKDPSTATADYQSAFEKIHPGLVVSGTVFEKSSDDLLI 767

Query: 554  YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYS 610
             +   G     + ++H++D      T   + I+ G + + LLV   + S+ L+  + K +
Sbjct: 768  KLQDSGLI-ARLNSDHISDGSAAKRTSALNRIRVGQKMEGLLVYRVKKSHRLIQVTNKAT 826

Query: 611  LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
            L  +  +  LP+    I     V G + NII  G FV FL  LTG  P+ + VD  RA  
Sbjct: 827  LKEAVAEGRLPAKFEDIKHGLKVTGLIKNIIPEGIFVEFLDNLTGLIPK-RLVDDDRASR 885

Query: 669  SK-TYYVGQSVRSNILDVNSETGRITLSLK--QSCCSSTDASFMQEHFLLEEKIAMLQSS 725
                Y   Q + + +  V  ++ R  LSLK       S+D S        E+K +    +
Sbjct: 886  PDFGYSRFQVISATVCAVQEDSDRFLLSLKPVAKLKQSSDVSSAP-----EKKASATALT 940

Query: 726  KHNGSELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHHQL 775
                 +LK +E  ++G + + K+    D    VV        +   E  D +  I   + 
Sbjct: 941  NPVDGDLKTMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEVFDSWEDIKDRKH 1000

Query: 776  AGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 833
               +  S  ++   +L +  A+  + + +S ++  +  +  +      Q  + K    + 
Sbjct: 1001 PLKSCHSKEILPVRVLGIHDARNHKFLPISHRSGKVPVYELSTKPSCLQASEFKPLHLEH 1060

Query: 834  LGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATV 891
            L V  T    V  + E+ L L+L P     +    +S D + +   QK F  G ++   V
Sbjct: 1061 LKVGDTHVGYVNNIAEDCLWLNLSPNVRGRLRITDISDDISIRGNIQKNFPVGSAIQVVV 1120

Query: 892  MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGI 951
              + +     RL L  +     +T +     K      G ++   +T++   ++ ++   
Sbjct: 1121 TGVDAEKN--RLDLSARIGESAKTLTVADLSK------GMILVGRVTKVTDRQVLVQIND 1172

Query: 952  GFHGRIHITEVNDD--KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPS 1009
               G + + ++ DD  K+N      +NF   + +   ++   + P+ K SF    S++PS
Sbjct: 1173 NVVGAVSLIDMADDYTKANP-----TNFHKNEALRVCVV-DVDIPNKKISF----SVRPS 1222

Query: 1010 MLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
             +  S   +    +     + +GQ V G++ +VDN    +T+  ++ A  +I  S    S
Sbjct: 1223 KVLSSSLPVADPEITSINQLKVGQIVRGFIRRVDNIGIFVTLGHNVTA--YIRVSDLSDS 1280

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----------PFQDGISDKTVDISND 1117
             L+E++  F + + + G +  ++K+   +++ L+          PF   + D  V     
Sbjct: 1281 FLKEWKDEFQVDQLIQGRLTVVDKDNNKIQMTLKKSALDPNYKPPF--ALKDLKV----- 1333

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                    G IV G++ K+      + +    +L G  H +E+    V D        Q 
Sbjct: 1334 --------GQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDAT------QL 1379

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL--DGMSSTNSSDLSTDVDTPGKH 1235
                 Y++   VK KVL++    +G   + L L++S   D      S D S+D ++ G  
Sbjct: 1380 -----YEKDDIVKAKVLKVDLE-KG--QIALGLKASYFKDLPEEQQSEDNSSDDESGGIE 1431

Query: 1236 L 1236
            L
Sbjct: 1432 L 1432


>gi|408391805|gb|EKJ71173.1| hypothetical protein FPSE_08679 [Fusarium pseudograminearum CS3096]
          Length = 1784

 Score =  204 bits (520), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/289 (39%), Positives = 180/289 (62%), Gaps = 11/289 (3%)

Query: 1497 DEAKTIDEKNNRHAKKKEKEEREQ-EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1555
            DE ++  E+  + A+K +K+ R + E++      L+ + P+T  ++ERL+   P+SS +W
Sbjct: 1459 DEPESESEEQVKDAEKPKKKRRTRDEVQIDRTAELDTNGPQTSSDYERLLLGQPDSSELW 1518

Query: 1556 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1615
            I Y+AF + +A++ KAR +AERA++TINIREE EKLN+WVAY NLE  YG   ++ V +V
Sbjct: 1519 IAYLAFQMQVAELSKAREVAERAIKTINIREETEKLNVWVAYLNLEVAYGT--KQTVEEV 1576

Query: 1616 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LK 1672
            F+RA QY D +++H  L  +Y ++E+ K AD L   M+KKF   S  VWL     L   +
Sbjct: 1577 FKRACQYNDQQEIHERLASVYIQSERLKDADALFETMVKKFGAKSPSVWLNYAHFLHATR 1636

Query: 1673 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTD 1730
             + +G +A++ RA   L +  H   +++ A LEF+  NG  +RGR+MF G+L  +PK+ D
Sbjct: 1637 NKPDGARALLPRATQQLGKSHHTNLMTRFAALEFRSPNGEPERGRTMFAGLLEAFPKKGD 1696

Query: 1731 LWSIYLDQEIRLGDVD--LIRGLF-ERAISLSLPPKKMKFLFKKYLEYE 1776
            +WS  LD E+ L + D  +IR +F ER     L P + +  F+++ ++E
Sbjct: 1697 IWSQRLDLELGLSEPDPVIIRDVFKERTRVQGLKPLQAEKWFRRWTDWE 1745



 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 226/944 (23%), Positives = 430/944 (45%), Gaps = 165/944 (17%)

Query: 533  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 587
            V LG++V+  ++  VV    V  ++  +A+G S G +P +HL+D  L+H         P 
Sbjct: 535  VPLGAVVTCEIEKVVVDERGVSGLIVKVAEGIS-GFVPEQHLSDVRLQH---------PE 584

Query: 588  YEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 640
             +F Q       +L  + +   + L+ K +++NS   +      +     + G +  ++ 
Sbjct: 585  KKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLS 644

Query: 641  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
            +G  ++F G + GF P S+  +    D  + + +GQ V  ++LDV  E  R+ +S K   
Sbjct: 645  SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPS 704

Query: 701  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
                        F LE++ A+              +   +G V+  KV +  +  V V  
Sbjct: 705  A-----------FGLEKQNAL--------------KKLQLGDVVSAKVTQKTEDQVFVEL 739

Query: 761  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 820
             + S +   I+   L   T +S S  Q A   +A  + L DL    V I    E + NR+
Sbjct: 740  AD-SQLKATISVGHL---TDKSNSKNQYAFKRIAVGQTLSDL----VII----EKDDNRR 787

Query: 821  A---QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS---------------------L 856
                  K    +ASK    ++T+    E+ KE  +V                       L
Sbjct: 788  VIVLSHKPSLLDASK----NRTLLTSFEMAKEGKIVAGFVRNITVTAVFVQFAGNLTALL 843

Query: 857  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSV-IATVMALPSSSTAGRLLLLLKAISET-E 914
            P+           D+   K         QS+ +  V  +P      R+++      E+ E
Sbjct: 844  PKARLPADVQDQPDFGMHKH--------QSIEVKIVSVIPDHQ---RIVVAPADFDESAE 892

Query: 915  TSSSKRAKKKSS----YDVGSLVQAEITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNV 969
             +   +A  K +     ++G++  A+IT +K  +L ++       GRI +++V D   ++
Sbjct: 893  LAKKGKASDKPAATDDIELGTITNAKITSVKDTQLNVQLANSKVQGRIDVSQVFDKWEDI 952

Query: 970  VE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSK 1019
            ++  +    +   Q ++ R++    AK +K  P   +S   + EL+ KPS +    +   
Sbjct: 953  LDPKDPLDKYNKKQNISVRVMGVHSAKDHKFLPFSHRSLHSVLELTAKPSDIEAKTL-KP 1011

Query: 1020 LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIG 1079
            L  E  DV +G     +V     +   + +S  ++ ++  ++++ + S+L + +  F IG
Sbjct: 1012 LSLE--DVKVGDTHVAFVNNSSPQHLWVNLSPSVRGRINAMEASDDLSQLNDLEANFPIG 1069

Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1139
             A+   V +++     L L         S ++ + S+    + + +  ++ GR++K+   
Sbjct: 1070 SALKVRVTAVDVRNNRLDL---------SARSSNSSDAVTWSVLKQNMVLPGRVTKV--N 1118

Query: 1140 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE--GQFVKCKVLEIS 1197
               ++V++   + G VH  ++ +              FD ++  ++  G  V+  V+E+ 
Sbjct: 1119 ERQVLVKLSEAVSGPVHLPDMTD-------------DFDTINTLNQRKGDIVRVSVVELD 1165

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1257
             + +    + LS R S   MSST        +    K +  +  L    IV+G+VKNV+ 
Sbjct: 1166 SSNK---RLRLSTRPSRI-MSST--------LPVKDKEISDVSQLDAGDIVRGFVKNVSD 1213

Query: 1258 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS- 1316
            KG F++L  ++ A V +SNLSD Y++  +  F + +LV GRV++V+ L++ VE++LK+S 
Sbjct: 1214 KGLFVLLGGQVTALVKISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSV 1273

Query: 1317 -DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVD 1374
             D      +  N++     G +V G++++VE +G FI I+ + N+ GLCH S+++E  V 
Sbjct: 1274 VDEDYTPPTTYNDIQE---GQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVK 1330

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN---DADN 1415
            +   +Y+ G+ VK ++L VD EKRR++ G+K S F++   D DN
Sbjct: 1331 DATKLYKEGDAVKARVLSVDAEKRRVAFGLKPSLFEDVDSDMDN 1374



 Score =  184 bits (466), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 187/714 (26%), Positives = 313/714 (43%), Gaps = 76/714 (10%)

Query: 7   VAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL-----------LPTI 52
           V  +N  D+ + LP  L G   +   +  L   L+NE    +D+            L +I
Sbjct: 149 VTRINNLDVEVALPNNLTGHISIVAVSQQLTERLENETADKDDDEEEEAEDDEGIDLKSI 208

Query: 53  FHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 111
           F VGQ L + +V  +++     GKR+I LSLR S    GL  + V     + A V S++D
Sbjct: 209 FAVGQYLRAYVVSTVEESTTGKGKRRIELSLRPSEANTGLEKDDVVPNATVMASVASVQD 268

Query: 112 HGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            G+++  G+ +   FL R+ +  +  ID   ++PG +    V S     K+  LS     
Sbjct: 269 RGFVMDTGIENLGAFLSRSEV--DKTIDEKRLQPGAVFLCQVISKGANGKIAQLSLQQKK 326

Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
           +           +I   +PG M    V +    G+    + +   T DI H        +
Sbjct: 327 IGNPKNLPTDATTIKTFLPGTMTDVLVSNTDRRGLAGKIMGHLDVTADIIHSGVGPAGVS 386

Query: 229 WKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL------------HNRAPPSHVKVG 274
               Y    +  AR++   P +R   +G++L P++               + P   + + 
Sbjct: 387 LDTAYKIGSRAKARVICNFPGAREPKLGISLLPHITTLEKKRSTKSADSKKNPTQVLPIS 446

Query: 275 DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRV 331
            + +   V  V+  +GL +DI    +S   +V IS V + +V  L +    YK GS  + 
Sbjct: 447 SLVETCTVRHVEADIGLFVDIGIPGLS--GFVHISRVKDGKVEALYESSGPYKAGSEHKG 504

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPG 386
           R++G+  ++GL     + S  E       DV  G VV  ++  + VD  G    IV+   
Sbjct: 505 RVVGYNEIDGLFQISFEKSVLEQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIVKVAE 564

Query: 387 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILS 444
           G+    P  H+S+  +  P KKF+ G ++  RVL   +  K++ +T KKT+V S+  ++ 
Sbjct: 565 GISGFVPEQHLSDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEAPVVK 624

Query: 445 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 504
           SY E T  +   G I K+   G  ++F+  VQGF P SE+      +P   + +GQVV  
Sbjct: 625 SYDEVTVGMQIPGTIIKVLSSGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSI 684

Query: 505 RIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
            ++   P  +R+ +S      F ++     +   ++LG +VS  V   T + V V  +A 
Sbjct: 685 HVLDVQPEDKRLVVSCKDPSAFGLEKQNALKK--LQLGDVVSAKVTQKTEDQVFVE-LAD 741

Query: 559 GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-----------LDNESSNLLLSA 607
              K TI   HL D        KS  K  Y F ++ V            D+    ++LS 
Sbjct: 742 SQLKATISVGHLTD--------KSNSKNQYAFKRIAVGQTLSDLVIIEKDDNRRVIVLSH 793

Query: 608 KYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
           K SL+++++   L +         +V G+V NI  T  FV+F G LT   P+++
Sbjct: 794 KPSLLDASKNRTLLTSFEMAKEGKIVAGFVRNITVTAVFVQFAGNLTALLPKAR 847



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 159/364 (43%), Gaps = 46/364 (12%)

Query: 89   KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGI 138
            K LSLE V+ G    A+V +       ++   PS  G +            N+L  N  I
Sbjct: 1010 KPLSLEDVKVGDTHVAFVNNSSPQHLWVNLS-PSVRGRINAMEASDDLSQLNDLEANFPI 1068

Query: 139  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 198
                G  L+  V ++D     + LS+     S  VT  +  +  ++++PG     RV  +
Sbjct: 1069 ----GSALKVRVTAVDVRNNRLDLSARSSNSSDAVTWSV--LKQNMVLPG-----RVTKV 1117

Query: 199  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK--VNARILFVDPTSRAVGLT 256
             E  V++      +G V +  + + F T N     NQ K   V   ++ +D +++ + L+
Sbjct: 1118 NERQVLVKLSEAVSGPVHLPDMTDDFDTIN---TLNQRKGDIVRVSVVELDSSNKRLRLS 1174

Query: 257  LNP-YLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVT 307
              P  ++ +  P    ++ D+   D   +VR       D+GL +LL    T     A V 
Sbjct: 1175 TRPSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVT-----ALVK 1229

Query: 308  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKP 364
            IS++++  +++ +  ++    V+ R++    L       LK+S  +       T++D++ 
Sbjct: 1230 ISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQE 1289

Query: 365  GMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            G VV GKV  V+ FGA +   G   V  LC    M+E  +    K +K G  +  RVL V
Sbjct: 1290 GQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSV 1349

Query: 423  KSKR 426
             +++
Sbjct: 1350 DAEK 1353



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 138/309 (44%), Gaps = 37/309 (11%)

Query: 1126 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            G +V   I K++    GV GL+V++   + G V    L ++ +  P     E +F     
Sbjct: 538  GAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHLSDVRLQHP-----EKKFR---- 588

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
              +G  VK +VL  +   +    + L+L+ ++              V++    ++  +++
Sbjct: 589  --QGMKVKARVLSTNLDKK---QMRLTLKKTI--------------VNSEAPVVKSYDEV 629

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
            +  M + G +  V S G  I     +   + +S +S+ Y++ P++ F IG++V+  VL V
Sbjct: 630  TVGMQIPGTIIKVLSSGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDV 689

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
            +P  KR+ V+ K  D       + N L  L +GD+V  ++ +     +F+ + ++ L   
Sbjct: 690  QPEDKRLVVSCK--DPSAFGLEKQNALKKLQLGDVVSAKVTQKTEDQVFVELADSQLKAT 747

Query: 1363 CHVSELSEDHVDNIETIYR---AGEKVK-VKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
              V  L++      +  ++    G+ +  + I++ D  +R I L  K S      +   +
Sbjct: 748  ISVGHLTDKSNSKNQYAFKRIAVGQTLSDLVIIEKDDNRRVIVLSHKPSLLDASKNRTLL 807

Query: 1419 SSEEESDEA 1427
            +S E + E 
Sbjct: 808  TSFEMAKEG 816



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 6/170 (3%)

Query: 360  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
            S +  G +V+G V  V   G  V   G V AL  + ++S+  I +    F+V   +  RV
Sbjct: 1196 SQLDAGDIVRGFVKNVSDKGLFVLLGGQVTALVKISNLSDRYIKEWKDHFQVDQLVKGRV 1255

Query: 420  LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGV 475
            + V   ++ + ++ K ++V       ++Y +  +  +  G + K+E+ G F+     + V
Sbjct: 1256 VAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDNV 1315

Query: 476  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
             G   RS++      + + +Y  G  VK R++S     RR+  +F +KP+
Sbjct: 1316 SGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRV--AFGLKPS 1363



 Score = 44.3 bits (103), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 125/299 (41%), Gaps = 37/299 (12%)

Query: 932  LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA-- 989
            ++   +T++   ++ +K      G +H+ ++ DD  + +  L  N + G  V   ++   
Sbjct: 1109 VLPGRVTKVNERQVLVKLSEAVSGPVHLPDMTDD-FDTINTL--NQRKGDIVRVSVVELD 1165

Query: 990  KSNKPDMKKSFLWELSIKPS--MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1047
             SNK          LS +PS  M +   +  K + +   +  G  V G+V  V ++   +
Sbjct: 1166 SSNK-------RLRLSTRPSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFV 1218

Query: 1048 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1107
             +   + A + I  S      ++E++  F + + V G V++++   KL R V    +  +
Sbjct: 1219 LLGGQVTALVKI--SNLSDRYIKEWKDHFQVDQLVKGRVVAVD---KLTRHVEMSLKSSV 1273

Query: 1108 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1167
             D+  D +       I EG +V G++ K+      +++    ++ G  H +++    V  
Sbjct: 1274 VDE--DYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVK- 1330

Query: 1168 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL--DGMSSTNSSD 1224
                      D    Y EG  VK +VL +    R    V   L+ SL  D  S  ++SD
Sbjct: 1331 ----------DATKLYKEGDAVKARVLSVDAEKR---RVAFGLKPSLFEDVDSDMDNSD 1376



 Score = 40.8 bits (94), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 38/244 (15%)

Query: 945  LRLKFGI-GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1003
            L +  GI G  G +HI+ V D K   +      +K G     R++   N+ D     L++
Sbjct: 463  LFVDIGIPGLSGFVHISRVKDGKVEALYESSGPYKAGSEHKGRVVG-YNEIDG----LFQ 517

Query: 1004 LSIKPSMLTVS-------EIGSKLLFEECDVSIGQR-VTGYVYKVDNEWALLTISRHLKA 1055
            +S + S+L           +G+ +  E   V + +R V+G + KV    +     +HL  
Sbjct: 518  ISFEKSVLEQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHL-- 575

Query: 1056 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1115
                         LQ  +++F  G  V   VLS N +KK +RL L+        KT+  S
Sbjct: 576  ---------SDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLK--------KTIVNS 618

Query: 1116 NDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
               +     E   G  + G I K+LS   G ++Q    + G +  +E+    + DP   +
Sbjct: 619  EAPVVKSYDEVTVGMQIPGTIIKVLS--SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHF 676

Query: 1173 DEGQ 1176
              GQ
Sbjct: 677  RIGQ 680


>gi|342879204|gb|EGU80461.1| hypothetical protein FOXB_09018 [Fusarium oxysporum Fo5176]
          Length = 1790

 Score =  203 bits (517), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 181/301 (60%), Gaps = 15/301 (4%)

Query: 1505 KNNRHAKKKEKEEREQEI-RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1563
            K+N   KKK +   E ++ R AE   L+ + P+T  ++ERL+   P+SS +WI YMAF +
Sbjct: 1474 KDNEKTKKKRRNRDEIQVDRTAE---LDANGPQTSSDYERLLLGQPDSSELWIAYMAFQM 1530

Query: 1564 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1623
             ++++ KAR +AERA+++INIREE EKLN+WVAY NLE  YG   ++ V +VF+RA QY 
Sbjct: 1531 QVSELSKAREVAERAIKSINIREETEKLNVWVAYLNLEVAYGT--KQTVEEVFKRACQYN 1588

Query: 1624 DPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQA 1680
            D ++VH  L  +Y ++E+ K AD L   M+KKF   S  VWL     L   +   +  +A
Sbjct: 1589 DAQEVHERLASIYIQSEKLKDADALFETMVKKFGAKSPNVWLNYAHFLHATRNDPDRARA 1648

Query: 1681 VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1738
            ++ RA   L        +S+ A LEF+  NG  +RGR+MF  +L+ YPK+ DLWS  LD 
Sbjct: 1649 LLPRATQQLGDRHSQTLVSRFAALEFRSPNGEPERGRTMFATLLAAYPKKGDLWSQLLDL 1708

Query: 1739 EIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
            EI L D D   IR +F+R   +  L PK  +  F+++ ++E+ +  + + + V  KA E+
Sbjct: 1709 EIGLSDADPTAIRDVFDRRTRVKGLKPKMAEKWFRRWADWEEKLDPKGK-DKVMAKAQEW 1767

Query: 1796 V 1796
             
Sbjct: 1768 A 1768



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 193/743 (25%), Positives = 331/743 (44%), Gaps = 62/743 (8%)

Query: 7   VAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL-----------LPTI 52
           V  +N  DL + LP  L G   +   +  L   L+NE    +D             L +I
Sbjct: 147 VTRINNLDLEVALPNNLTGHISIVAMSQQLTDRLENETAEKDDEEDDEAEDDEGIDLKSI 206

Query: 53  FHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 111
           F VGQ +   V    ++      KR+I LSLR +    GL+ + V     + A + S+ED
Sbjct: 207 FAVGQYLRAYVASTAEESTAGKSKRRIELSLRPNEANTGLAKDDVVPNTTVMASIVSVED 266

Query: 112 HGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
            G+++  G+ +   FL ++ + +N  ID   ++PG +    V S     K+  LS     
Sbjct: 267 RGFVMDTGIENLGAFLAKSEVDKN--IDEQRLQPGAVFLCQVTSKGANGKIAQLSLQQKK 324

Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
           +    +      +I+  +PG M    + +    G+    + +   T DI          +
Sbjct: 325 IGNPKSVPADATTINTFLPGTMADVLISNTDRRGLSGKIMGHLDVTADIIQSGAGPAGVS 384

Query: 229 WKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYL--LHNRAP---------PSHV-KVG 274
               Y    +V AR++   P +R   +G++L P++  L  + P         P+ V  + 
Sbjct: 385 LDTAYKIGSRVKARVICNFPGAREPKLGISLLPHITALEKKRPTKSTDSKKNPTQVLPIS 444

Query: 275 DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRV 331
            + +   V  V+  +GL +DI    +S   +V IS V + +V  L +    YK  S  + 
Sbjct: 445 SLVETCTVRHVEPDIGLFVDIGIPGLS--GFVHISRVKDGKVEALYEASGPYKVDSEHKG 502

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPG 386
           R++G+  ++GL     + S  E       DV  G VV   +  + +D  G    +V+   
Sbjct: 503 RVIGYNEMDGLFQISFEKSVLEQQYLRLEDVPIGAVVTCNIEKVLIDEKGVSGLVVKVAE 562

Query: 387 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILS 444
           G+    P  H S+ ++  P KKF+ G ++  RVL   +  K++ +T KKTLV S+  ++ 
Sbjct: 563 GITGFVPEQHFSDVKLQHPEKKFRQGMKVKARVLSTNLSKKQMRLTLKKTLVNSEAPVIK 622

Query: 445 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 504
           +Y EA+  +   G I KI+  G  ++F+  VQGF P SE+      +P   +  GQVV  
Sbjct: 623 AYEEASVGMQIPGTIIKIQSSGAIIQFFGAVQGFLPISEMSEAYIKDPKEHFRTGQVVSV 682

Query: 505 RIMSSIPASRRINLSFMMKPTRVSEDDL-----VKLGSLVSGVVDVVTPNAVVVYVIAKG 559
            ++   P S+R+ +S    P+    D       ++LG +VS  V   T + V V  +A  
Sbjct: 683 HVLDVEPESKRLVVS-CKDPSAFGLDKQNALKKLQLGDIVSAKVTQKTEDQVFVE-LADA 740

Query: 560 YSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSN-LLLSAKYSLINSAQ 616
             K  +P  HL D    ++   +K +       D ++V  NE+   ++LS K SL+++ +
Sbjct: 741 QLKAILPVGHLTDKSTSKNQYALKRIAVGQTLSDLVIVEKNENRRAVILSHKPSLVSAGK 800

Query: 617 Q--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSK-TY 672
              L +         +V G+V NI  T  FV+F G +    P+++ A D Q  DL     
Sbjct: 801 DKTLLTSFEDAKEGKIVAGFVRNITVTAVFVQFGGAVNALLPKARLAADIQ--DLPDFGM 858

Query: 673 YVGQSVRSNILDVNSETGRITLS 695
           +  QS+   I+ V  +  RI ++
Sbjct: 859 HKHQSIEVKIVSVIPDHKRIVVA 881



 Score =  177 bits (450), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 258/1123 (22%), Positives = 478/1123 (42%), Gaps = 179/1123 (15%)

Query: 351  AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA--LCPLPHMSEFEIVKPGKK 408
               G +  H DV   ++  G   A  S     +    VKA  +C  P   E         
Sbjct: 358  GLSGKIMGHLDVTADIIQSGAGPAGVSLDTAYKIGSRVKARVICNFPGAREP-------- 409

Query: 409  FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GC 467
             K+G  L+  +  ++ KR T +       +++  +SS  E          +  +E   G 
Sbjct: 410  -KLGISLLPHITALEKKRPTKSTDSKKNPTQVLPISSLVETCT-------VRHVEPDIGL 461

Query: 468  FVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
            FV     G+ GF   S +    ++   E S  Y V    K R++          +SF   
Sbjct: 462  FVDIGIPGLSGFVHISRVKDGKVEALYEASGPYKVDSEHKGRVIGYNEMDGLFQISF--- 518

Query: 524  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS----------KGTIPTEHLAD- 572
               V E   ++L  +  G V  VT N   V +  KG S           G +P +H +D 
Sbjct: 519  EKSVLEQQYLRLEDVPIGAV--VTCNIEKVLIDEKGVSGLVVKVAEGITGFVPEQHFSDV 576

Query: 573  HLEHATVMKSVIKPGYEFDQLLVLDNESS-NLLLSAKYSLINSAQQLPSDASHIHPNSVV 631
             L+H    +   + G +    ++  N S   + L+ K +L+NS   +            +
Sbjct: 577  KLQHP---EKKFRQGMKVKARVLSTNLSKKQMRLTLKKTLVNSEAPVIKAYEEASVGMQI 633

Query: 632  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             G +  I  +G  ++F G + GF P S+  +    D  + +  GQ V  ++LDV  E+ R
Sbjct: 634  PGTIIKIQSSGAIIQFFGAVQGFLPISEMSEAYIKDPKEHFRTGQVVSVHVLDVEPESKR 693

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 751
            + +S K               F L+++ A+              +   +G ++  KV + 
Sbjct: 694  LVVSCKDPSA-----------FGLDKQNAL--------------KKLQLGDIVSAKVTQK 728

Query: 752  NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 811
             +  V V   + + +   +    L   T +S S  Q A+  +A  + L DL +       
Sbjct: 729  TEDQVFVELAD-AQLKAILPVGHL---TDKSTSKNQYALKRIAVGQTLSDLVI------- 777

Query: 812  FREANSNRQA---QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS------------- 855
              E N NR+A     K     A KD    +T+    E  KE  +V               
Sbjct: 778  -VEKNENRRAVILSHKPSLVSAGKD----KTLLTSFEDAKEGKIVAGFVRNITVTAVFVQ 832

Query: 856  --------LPEYNHSIGYASVSDYNTQKFPQKQFLNGQSV-IATVMALPSSSTAGRLLLL 906
                    LP+   +     + D+   K         QS+ +  V  +P      R+++ 
Sbjct: 833  FGGAVNALLPKARLAADIQDLPDFGMHKH--------QSIEVKIVSVIPDHK---RIVVA 881

Query: 907  LKAISET-----ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHIT 960
                 E+     +  +S +       + G++ +A+IT IK  +L ++       GRI ++
Sbjct: 882  PADFDESAELDKKAKASDKPAASDDIEFGTVAKAKITSIKDTQLNVQLVDSKVQGRIDVS 941

Query: 961  EVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSM 1010
            ++ D   ++ +  +    +   QTV+ R++    AK ++  P   +S   + EL+ KPS 
Sbjct: 942  QIFDKWEDIPDPKDPLDKYHKKQTVSVRVMGVHSAKDHRFLPFSHRSLHSVLELTAKPSD 1001

Query: 1011 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1070
            L    +   L  E  ++ +G     +V     +   + +S  ++ ++  ++++ + S+L 
Sbjct: 1002 LKAKTL-EPLSLE--NLKVGDTYVAFVNNSSPQHLWVNLSPSVRGRISAMEASDDLSQLN 1058

Query: 1071 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG 1130
            + +  F +G A+   V  ++   K L L  R      S +TV  S       + +  ++ 
Sbjct: 1059 DLEANFPVGSALKVRVTGVDARNKRLDLSARSSS---SSETVTWSA------LKQNMVLP 1109

Query: 1131 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE--GQF 1188
            GR++K+      ++V++   + G VH  ++ +              FD ++   +  G+ 
Sbjct: 1110 GRVTKV--NERQVLVKLSELVSGPVHLPDMAD-------------DFDTVNTLKQKKGEI 1154

Query: 1189 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1248
            V+  ++E+  + +    + LS R S   MSST        +    K +  +  L    IV
Sbjct: 1155 VRVSIVELDASNK---RLRLSTRPSRI-MSST--------LPVKDKEISDVSQLDAGDIV 1202

Query: 1249 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1308
            +G+VKNV+ KG F++L  ++ A V +SNLSD Y++  +  F I +LV GRV++V+  ++ 
Sbjct: 1203 RGFVKNVSDKGLFVLLGGQVTALVKISNLSDRYLKEWKDHFQIDQLVKGRVIAVDKQTRH 1262

Query: 1309 VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSE 1367
            VE++LK+S         I   +++  G +V G++++VE +G FI I+N+ N+ GLCH S+
Sbjct: 1263 VELSLKSSVVDEDYTPPI-TYNDIKEGQVVTGKVRKVEEFGAFILIDNSDNVSGLCHRSQ 1321

Query: 1368 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
            ++E+ V +   +Y+ G+ VK ++L+VD  KRR++ G+K S F+
Sbjct: 1322 MAENPVKDATKLYKEGDAVKARVLEVDINKRRVTFGLKPSLFE 1364



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 139/312 (44%), Gaps = 43/312 (13%)

Query: 1126 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRV---HFTELKNICVSDPLSGYDEGQFDP 1179
            G +V   I K+L    GV GLVV++   + G V   HF+++K                 P
Sbjct: 536  GAVVTCNIEKVLIDEKGVSGLVVKVAEGITGFVPEQHFSDVK--------------LQHP 581

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
               + +G  VK +VL  + + +    + L+L+ +L              V++    ++  
Sbjct: 582  EKKFRQGMKVKARVLSTNLSKK---QMRLTLKKTL--------------VNSEAPVIKAY 624

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            E+ S  M + G +  + S G  I     +   + +S +S+ Y++ P++ F  G++V+  V
Sbjct: 625  EEASVGMQIPGTIIKIQSSGAIIQFFGAVQGFLPISEMSEAYIKDPKEHFRTGQVVSVHV 684

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
            L VEP SKR+ V+ K  D       + N L  L +GDIV  ++ +     +F+ + +  L
Sbjct: 685  LDVEPESKRLVVSCK--DPSAFGLDKQNALKKLQLGDIVSAKVTQKTEDQVFVELADAQL 742

Query: 1360 VGLCHVSELSEDHVDNIETIYR---AGEKVK-VKILKVDKEKRRISLGMKSSYFKNDADN 1415
              +  V  L++      +   +    G+ +  + I++ ++ +R + L  K S      D 
Sbjct: 743  KAILPVGHLTDKSTSKNQYALKRIAVGQTLSDLVIVEKNENRRAVILSHKPSLVSAGKDK 802

Query: 1416 LQMSSEEESDEA 1427
              ++S E++ E 
Sbjct: 803  TLLTSFEDAKEG 814



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 165/375 (44%), Gaps = 52/375 (13%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGIDV 140
            LSLE ++ G    A+V +       ++   PS  G +            N+L  N  +  
Sbjct: 1010 LSLENLKVGDTYVAFVNNSSPQHLWVNLS-PSVRGRISAMEASDDLSQLNDLEANFPV-- 1066

Query: 141  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 200
              G  L+  V  +D   K + LS+   + S+ VT     +  ++++PG     RV  + E
Sbjct: 1067 --GSALKVRVTGVDARNKRLDLSARSSSSSETVT--WSALKQNMVLPG-----RVTKVNE 1117

Query: 201  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK--VNARILFVDPTSRAVGLTLN 258
              V++      +G V +  + + F T N      Q K   V   I+ +D +++ + L+  
Sbjct: 1118 RQVLVKLSELVSGPVHLPDMADDFDTVN---TLKQKKGEIVRVSIVELDASNKRLRLSTR 1174

Query: 259  P-YLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVTIS 309
            P  ++ +  P    ++ D+   D   +VR       D+GL +LL    T     A V IS
Sbjct: 1175 PSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVT-----ALVKIS 1229

Query: 310  DVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE-GLATGILKASAFEGLVFTHSDVKP 364
            ++++  +++ +  ++    V+ R++      RH+E  L + ++       +  T++D+K 
Sbjct: 1230 NLSDRYLKEWKDHFQIDQLVKGRVIAVDKQTRHVELSLKSSVVDEDYTPPI--TYNDIKE 1287

Query: 365  GMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            G VV GKV  V+ FGA  ++     V  LC    M+E  +    K +K G  +  RVL V
Sbjct: 1288 GQVVTGKVRKVEEFGAFILIDNSDNVSGLCHRSQMAENPVKDATKLYKEGDAVKARVLEV 1347

Query: 423  --KSKRITVTHKKTL 435
                +R+T   K +L
Sbjct: 1348 DINKRRVTFGLKPSL 1362


>gi|407404924|gb|EKF30181.1| rRNA biogenesis protein, putative [Trypanosoma cruzi marinkellei]
          Length = 671

 Score =  203 bits (517), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 185/305 (60%), Gaps = 11/305 (3%)

Query: 1505 KNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1564
            K N   ++K ++ + +E   A ER +E  AP +PDEF RL+ ++PN+S++W+++MA  ++
Sbjct: 329  KKNGGGEQKLRKRKIEEAIDAYERSMETAAPSSPDEFRRLLMAAPNNSYLWVQWMAHHVA 388

Query: 1565 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC- 1623
            +   E+AR +AE+AL TI +RE  E+LN+WVAY NLEN +G    E++  VF+RALQ+  
Sbjct: 389  LQQQEEARLVAEKALSTIGVRETQERLNVWVAYMNLENIHGT--MESLSAVFKRALQHAP 446

Query: 1624 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVV 1682
            DP  V+  L  ++  T +      L   M+ KF++  + W R  + L+ Q +++ ++ +V
Sbjct: 447  DPLVVYERLADIFSATRKPNQLLALCRTMVSKFRNEQRTWERLGKVLIDQKKRDQLRRIV 506

Query: 1683 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1742
            +    +L R  +   + + A+ E+KNG  + GR++FEG++   PK++D+WS YLDQE+ L
Sbjct: 507  KDMSGALRRDAYSLTVVRLAVYEYKNGSVENGRALFEGLVVRMPKKSDVWSAYLDQEMAL 566

Query: 1743 -------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
                     V L+R L ERA++ +   K M+    +++ +E++ G    +E VK +A  Y
Sbjct: 567  LVRRDESAAVPLVRALLERAVATNFSAKVMQQFLTRFMSFERTYGTPADVEKVKTRARSY 626

Query: 1796 VESTL 1800
            VE+ +
Sbjct: 627  VEAKI 631


>gi|66359862|ref|XP_627109.1| RRP5 like protein involved in rRNA biogenesis with 7 S1 domains and 5
            HAT repeats [Cryptosporidium parvum Iowa II]
 gi|46228533|gb|EAK89403.1| RRP5 like protein involved in rRNA biogenesis with 7 S1 domains and 5
            HAT repeats [Cryptosporidium parvum Iowa II]
          Length = 2002

 Score =  203 bits (516), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 180/660 (27%), Positives = 314/660 (47%), Gaps = 110/660 (16%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV--ESPEKEFPI 1291
            K +E    +    I+ GYV N   +G F+ + R+L  ++ L  L+ G +  E   + F I
Sbjct: 1349 KEIESFSQVKVGSILSGYVCNSGKEGVFVRVGRELVGRIKLRELTSGTITPEEASRRFFI 1408

Query: 1292 GKLVAGRVL-SVEPLSKRVEVT----------LKTSDSRTASQSE--------------- 1325
            GK +   V+ ++    K+V+++          L+ S   T  Q E               
Sbjct: 1409 GKFINQMVVVNINKDEKKVDLSISKLESDDIKLRLSQIETKKQVESEDEYVDMGIDKEVD 1468

Query: 1326 --------------IN---NLSNLHVGDIVIGQIKRV-ESYGLFITIENT--NLVGLCHV 1365
                          IN   +  +L++G ++ G I  V + +GLFI + +   +L  LC +
Sbjct: 1469 LGNKVKKMAQSLGDINEKLSFEDLYIGRVLTGVIINVSKKHGLFIRLNDIKDDLTALCKL 1528

Query: 1366 SEL--SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN----DADNLQMS 1419
            SE      + + I +++  G+ V  K+LK + EKRR+ +G+K SYF      + DNL   
Sbjct: 1529 SECLDGRSNRNKISSVFNVGDNVLCKVLKFNSEKRRVWVGIKPSYFSELKGEEGDNLSFE 1588

Query: 1420 SEEESD-EAIEEVGSYNRSSLLE-NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVN 1477
            + +  D E++E V S N   L +   ++ + D  +E  +   +   + E       LEV 
Sbjct: 1589 NNQLMDIESVETVESENEEELKDVEMTLGLNDEGLEYRESDHMNDGE-EDFLGNRNLEVM 1647

Query: 1478 LDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA--- 1534
             +D + +     SQ      E+K ++        +K+K +R+ E         EK     
Sbjct: 1648 KEDSEYEK----SQESESKLESKNLN--------RKQKVQRQLEHEHRIREEEEKGMRSH 1695

Query: 1535 --PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1592
              P T D+FERL+ +  + S +WI+YM++ L + D++KAR +AER+L+ I+++EE E+ N
Sbjct: 1696 LNPSTIDDFERLLITHRDVSSLWIRYMSYYLDLEDLDKARMVAERSLKQISVKEEMERWN 1755

Query: 1593 IWVAYFNLENEYGNP----------------PEEAVVK----VFQRAL-QYCDPKKVHLA 1631
            IW+AY N+E  YG                   E+ + K    +  RAL    D KK+++ 
Sbjct: 1756 IWIAYINMEIVYGKNELLTSTGENNISSLRGKEDGIPKNVRQILDRALMNVTDQKKLYIQ 1815

Query: 1632 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSL 1689
            +     R  + +    LL + +KKF+ S K+W+  +  L +   Q++    V+Q++L S+
Sbjct: 1816 IFSSLRRHSKEEQGLALLEEGLKKFQTSRKLWVTYLTCLYESDNQKKARDEVIQKSLKSV 1875

Query: 1690 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD----- 1744
             + K ++ I+  A LEF+ G  +RGR++FE +L E  KR DLWS Y D   +L       
Sbjct: 1876 SKDKVVRLITDIARLEFEYGNINRGRTIFENLLEENSKRMDLWSQYFDILTKLCSKDNPK 1935

Query: 1745 --------VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
                    +++ R +F   I  +  P+ MK +F ++L +EK  G  +  ++V+  A+ YV
Sbjct: 1936 SNSSMADHIEMARSIFSSCIEKNFKPRSMKMIFTRWLSFEKEFGSLQSQKHVQDLAINYV 1995



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 19/203 (9%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANED---NLLPTIFHVGQLV 59
           L+GV+  V+EK+L+I LPG    +    + L+      IE  ++     L   F VGQ V
Sbjct: 53  LFGVIDHVSEKELIISLPGSNTAIISIENTLEDSRTIPIELFQELKKKSLEDRFSVGQFV 112

Query: 60  SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQE---GMVLTAYVKSIEDHGYIL 116
           +  ++  +  K  I       +L+ S+L  GL+  +      G V++A + S E+HG+ +
Sbjct: 113 NGAIISNNKIKNNI-------TLKPSILNAGLNSNSKCLNVFGYVISALIISKENHGFNI 165

Query: 117 HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS--DPDTVSKCVT 174
           + G+        +  + E+   + + G +L   +    + + ++  +   D +  SK   
Sbjct: 166 YTGIQGVKTVFMK--VEESEFKEYRLGQILPVSIHQFFKEKSLLICTPIYDQNENSKIGR 223

Query: 175 KDLKGISIDLLVPGMMVSTRVQS 197
           K++  +SI  + PG+MV   + +
Sbjct: 224 KEI--LSIHEIKPGLMVECLIHA 244


>gi|312374936|gb|EFR22395.1| hypothetical protein AND_15302 [Anopheles darlingi]
          Length = 1641

 Score =  203 bits (516), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/295 (38%), Positives = 172/295 (58%), Gaps = 7/295 (2%)

Query: 1508 RHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1566
            R    K++EER   +R  EE L +  A P TPD+F+RLV + PN+S +WI+YMAF +  A
Sbjct: 1337 RFEAMKQEEER---LRKIEEELADPSATPHTPDQFDRLVMAQPNNSMLWIRYMAFHMESA 1393

Query: 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626
            +++KAR++A +AL+ IN REE E LN+W+A  NLE  Y     +   +V   A+QY D  
Sbjct: 1394 ELDKARTVARKALKAINFREEAELLNVWIALLNLELRYETV--DTFKEVLTEAIQYNDAF 1451

Query: 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRA 1685
            KV+  +L +    ++     ELL  ++KKF+    +W        +  Q    + ++ +A
Sbjct: 1452 KVYRRVLDILIDCQKVSEVSELLELLVKKFRKENDMWYLVADAWYRIGQTNKAKPLLSQA 1511

Query: 1686 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1745
            L SLP   HI  I + A L  ++G  D    +FE IL+ YPKRTD+WS Y+D  ++ G +
Sbjct: 1512 LKSLPNRDHIPLIVKFAFLHNRHGNRDEAHLLFEQILTSYPKRTDIWSQYVDMLVKDGLI 1571

Query: 1746 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
            +  R + ERAI   LP K MK L+ KY+ +E+  G+ + +  VKQ A +YV++ L
Sbjct: 1572 EEARQILERAIVQRLPMKNMKTLYTKYVTFEEKHGDRDSVRRVKQMAADYVQAQL 1626



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 138/609 (22%), Positives = 252/609 (41%), Gaps = 52/609 (8%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN------LLPTIFH 54
           M + G V    +  + + LPG + G      A+       ++A  D        L  ++ 
Sbjct: 86  MLVLGCVQRTFKTHMEVTLPGRITGTV-PVPAISEAYTKRLQAMIDRQSFDCPTLDDLYK 144

Query: 55  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 114
           V +LV   V++     K+   R++ LSL    L+   +   +  G+VL+A +   EDHGY
Sbjct: 145 VNELVYVKVME-----KQTSPRQLTLSLNPHDLHSSFTANQLVPGLVLSATLSIEEDHGY 199

Query: 115 ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 174
            +  G+ +   FLP+ NL +NS    + G  L   +  + R    V +        +   
Sbjct: 200 TMDVGIRNVRAFLPKENLCKNS---TEIGRNLFCSIEKVTRQGTTVTIILKAFRPKESRL 256

Query: 175 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND-Y 233
            ++   +++ +VPG +V   V S++++G+     T F  TV  F  +      N K + Y
Sbjct: 257 LNVSMTNLETIVPGCVVPFTVGSVVKHGLR---GTLFDDTVAAFVNETMLTQPNSKPESY 313

Query: 234 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS-HVKVGDIYDQSKVVRVDRGLGLL 292
              ++++A +L+V P ++ V ++L  Y   NRA  S     G+  + + VV V      L
Sbjct: 314 TMFQQLDATVLYVMPVTKHVFVSLAKY-PGNRAENSVAYAAGETIENAHVVTVTSAGAWL 372

Query: 293 LDIPSTPVSTPAYVTISDVA---EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 349
                     P  V +  +    EE V  +  KY  GS   +RIL +   + L    +  
Sbjct: 373 QFAKEYRALLPKSVIMKRIKGNYEESV--VMSKYHVGSVHTLRILRY---DPLNRTFIVC 427

Query: 350 SAFEGLV--FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
              +  V   T  D++ G + + +V  +   G      G V+           + VK G 
Sbjct: 428 DTLDNAVDELTLQDIQIGEIYQMRVKKLLDAGGFFVEQGAVRGSVSREWFDRTQHVKEGA 487

Query: 408 KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA--EATDRLIT-------HGW 458
           + +V A ++F      +  +  T+   L+K  + ILSS    E  + ++T       HG 
Sbjct: 488 RVQVRA-MMFE---PSTPFVQFTNLPDLLKKGIRILSSREQLENANSILTAPEAKQFHGL 543

Query: 459 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 518
           + +  +    ++F N ++G   +    ++          VG VV+  +     A++++ L
Sbjct: 544 VVQETRDYFMIKFANDIKGLLMKHLRDMEQDTAKMHTLRVGSVVQVTVHQYNFATQKLLL 603

Query: 519 SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 578
           S  +  T         + +L    V  V P  V + V+ +  SKGTIP ++ +D   H  
Sbjct: 604 SLPLHSTDT-------VSTLTEATVIAVLPTGVEI-VLKEDRSKGTIPLQYFSDFAAHNP 655

Query: 579 VMKSVIKPG 587
           +    +K G
Sbjct: 656 LYVGQLKEG 664


>gi|426201105|gb|EKV51028.1| hypothetical protein AGABI2DRAFT_196672 [Agaricus bisporus var.
           bisporus H97]
          Length = 1470

 Score =  202 bits (515), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 229/914 (25%), Positives = 399/914 (43%), Gaps = 107/914 (11%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---DNEIEANEDNL------ 48
           MK+ G V  +    L+I LP  L G   + + +     +L   DN  E +++++      
Sbjct: 116 MKILGQVVSIIPLGLIISLPNQLYGHVPITQISSQFTTVLERFDNRDEGSDEDIAMEDED 175

Query: 49  -------LPTIFHVGQLVSCIVLQLD----DDKKEIGK---------RKIWLSLRLSLLY 88
                  L  +FHVGQ V  IV  +      D   +GK         R++ LSL    + 
Sbjct: 176 EDTQTPDLYGMFHVGQYVRAIVTNVHAAGVSDIMGVGKLRDDLAKASRRMELSLVPEKVN 235

Query: 89  KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 148
            G+    ++ G  ++A VKS+EDHGY L  G+   +GFL   ++  +S   +  G ++  
Sbjct: 236 AGVQKTDLKSGFTISAAVKSLEDHGYNLDLGVQDVSGFLSFEDVGRDSP-KLHVGHVINV 294

Query: 149 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 208
            V  I    +V  ++ D +  +K +  ++   S++ ++PG +V   + SI   G+ L  L
Sbjct: 295 SVSKISANNRVCNVTMDCEKQAKSLLYEIS--SVNSVLPGTLVQCLITSINPEGINLQVL 352

Query: 209 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---VDPTSRAVGLT-----LNPY 260
            +F GTVD FHL    P       +    KV ARIL+     P   ++ L+     L PY
Sbjct: 353 GFFDGTVDQFHLPKNPPKP-----FKVGTKVKARILYNYSASPPKFSLALSEHVIRLRPY 407

Query: 261 LLHNRAPPSHVK----VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 316
           ++      S ++    VG + D  KV RV++  GL++++         +V IS ++++ V
Sbjct: 408 MVSMGEDSSLLEEAYPVGTVLDAVKVSRVEKERGLIVEVDG---QLEGFVHISHLSDDHV 464

Query: 317 RKLEK--KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 374
             L     +K G+  R R+ G    +GL    LK S  E      +DV  G  V G +  
Sbjct: 465 PSLTSIGPWKPGTIHRARVTGHFTFDGLLQLSLKRSVLEQKYIQVTDVGVGQTVTGTIKK 524

Query: 375 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHK 432
           +      V     +  +    H ++  +  P K+FKVG  +  RVL V ++  RI++T K
Sbjct: 525 LTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRVLVVDAEKNRISLTAK 584

Query: 433 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 492
           KTL+ S+L ILS+  +     + H  + K+      V FYN ++   P  E+   P    
Sbjct: 585 KTLLNSQLPILSNIEDVQPEDLAHAVVFKVHDKHLLVEFYNNLKAVIPLKEVSETPVNSL 644

Query: 493 SSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL--VKLGSLVSGVVDVVTPN 549
           S  + VG+VVK RI+S     RRI  S      T  +  D+  V++G++V GVV  +  +
Sbjct: 645 SEAFSVGKVVKVRIISVQQNQRRIVASIRRATATGSATPDISKVEVGNIVEGVVAEIHKD 704

Query: 550 AVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMKSVIKPGYEFDQLLVLDNESSN---LLL 605
             +++ +     K     ++LA+H       +KS +K G    +L+V+         ++ 
Sbjct: 705 NAILF-LQPSNVKALHSLKNLANHRAIGLPQLKSELKVGERLSELVVVTRNLEKGFVIVA 763

Query: 606 SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 665
           +A  S +    ++     ++H   +V G V      G  V+    + G    +   D   
Sbjct: 764 NAPKSKLTLPSKIALSIDNVHIGQIVSGRVIRHTRLGALVKVTSHIGGIIHPTDVSDNFD 823

Query: 666 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 725
             LS    V   V++ I+ V+ E  R+TLS +QS                  ++   Q++
Sbjct: 824 NGLSYP-AVDSLVKAAIVKVDEEKRRVTLSTRQS------------------RLRPDQTT 864

Query: 726 KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY--------GFITHHQLAG 777
           +    E+  +   I+G+ + G V    D G+ V+   + D           FI   +   
Sbjct: 865 QVVDKEINDISDLILGASVRGFVKSIADHGLFVTVGRYIDARVQIRELFDDFIKDWK--- 921

Query: 778 ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
              +   +++  IL V    + V+L+        FR  + + + ++ + KR  S DL   
Sbjct: 922 PKFQVNQLVKGRILSVDIENQKVELT--------FRSGDLSARQREGQTKRSPS-DLHEG 972

Query: 838 QTVNAIVEIVKENY 851
           + V+ I++ + ENY
Sbjct: 973 EKVDGIIKRI-ENY 985



 Score =  143 bits (361), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 162/606 (26%), Positives = 285/606 (47%), Gaps = 72/606 (11%)

Query: 833  DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 892
            D+GV QTV   ++ + ++ + ++L E    + + +       K P K+F  G S+   V+
Sbjct: 511  DVGVGQTVTGTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRVL 570

Query: 893  ALPS-----SSTAGRLLL--LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 945
             + +     S TA + LL   L  +S  E    +            L  A + ++    L
Sbjct: 571  VVDAEKNRISLTAKKTLLNSQLPILSNIEDVQPE-----------DLAHAVVFKVHDKHL 619

Query: 946  RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1005
             ++F       I + EV++   N +   FS   +G+ V  RII+             +  
Sbjct: 620  LVEFYNNLKAVIPLKEVSETPVNSLSEAFS---VGKVVKVRIISVQQN---------QRR 667

Query: 1006 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS-RHLKAQLFILDSA- 1063
            I  S+   +  GS    +   V +G  V G V ++  + A+L +   ++KA   + + A 
Sbjct: 668  IVASIRRATATGSATP-DISKVEVGNIVEGVVAEIHKDNAILFLQPSNVKALHSLKNLAN 726

Query: 1064 YEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            +    L + +    +G+ ++  V+ + N EK  + +   P         + +S DN    
Sbjct: 727  HRAIGLPQLKSELKVGERLSELVVVTRNLEKGFVIVANAPKSKLTLPSKIALSIDN---- 782

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            +H G IV GR+  I     G +V++  H+ G +H T+     VSD    +D G    LS 
Sbjct: 783  VHIGQIVSGRV--IRHTRLGALVKVTSHIGGIIHPTD-----VSD---NFDNG----LSY 828

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
                  VK  ++++    R         R +L    S    D +T V    K +  I DL
Sbjct: 829  PAVDSLVKAAIVKVDEEKR---------RVTLSTRQSRLRPDQTTQV--VDKEINDISDL 877

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                 V+G+VK++   G F+ + R +DA+V +  L D +++  + +F + +LV GR+LSV
Sbjct: 878  ILGASVRGFVKSIADHGLFVTVGRYIDARVQIRELFDDFIKDWKPKFQVNQLVKGRILSV 937

Query: 1303 EPLSKRVEVTLKTSD--SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            +  +++VE+T ++ D  +R        + S+LH G+ V G IKR+E+YGLFI IE T + 
Sbjct: 938  DIENQKVELTFRSGDLSARQREGQTKRSPSDLHEGEKVDGIIKRIENYGLFIQIEGTKMS 997

Query: 1361 GLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            GLCH SELS++   ++      +R G++VK  ++++D  K+RIS  +K S F    ++L 
Sbjct: 998  GLCHKSELSDNKDADVSVALQNFRQGDRVKAVVIEID--KKRISFSLKPSLFVE--EDLD 1053

Query: 1418 MSSEEE 1423
             S+E+E
Sbjct: 1054 GSAEDE 1059


>gi|46111359|ref|XP_382737.1| hypothetical protein FG02561.1 [Gibberella zeae PH-1]
          Length = 1782

 Score =  202 bits (515), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 179/289 (61%), Gaps = 11/289 (3%)

Query: 1497 DEAKTIDEKNNRHAKKKEKEEREQ-EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1555
            DE ++  E+  + A+K +K+ R + E++      L+ + P+T  ++ERL+   P+SS +W
Sbjct: 1457 DEPESESEEQAKDAEKPKKKRRTRDEVQIDRTAELDTNGPQTSSDYERLLLGQPDSSELW 1516

Query: 1556 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1615
            I Y+AF + +A++ KAR +AERA++TINIREE EKLN+WVAY NLE  YG   ++ V +V
Sbjct: 1517 IAYLAFQMQVAELSKAREVAERAIKTINIREETEKLNVWVAYLNLEVAYGT--KQTVEEV 1574

Query: 1616 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LK 1672
            F+RA QY D +++H  L  +Y ++E+ K AD L   M+KKF   S  VWL     L   +
Sbjct: 1575 FKRACQYNDQQEIHERLASVYIQSERLKDADALFETMVKKFGAKSPNVWLNYAHFLHATR 1634

Query: 1673 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTD 1730
             + +G +A++ RA   L +  H   +++ A LEF+  NG  +RGR+MF G+L  +PK+ D
Sbjct: 1635 NKPDGARALLPRATQQLGKSHHTNLMTRFAALEFRSPNGEPERGRTMFAGLLEAFPKKGD 1694

Query: 1731 LWSIYLDQEIRLGDVD--LIRGLFE-RAISLSLPPKKMKFLFKKYLEYE 1776
            +WS  LD E+ L + D  +IR +F+ R     L P + +  F+++  +E
Sbjct: 1695 IWSQRLDLELGLSEPDPVIIRDVFKARTRVQGLKPLQAEKWFRRWTAWE 1743



 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 174/658 (26%), Positives = 292/658 (44%), Gaps = 62/658 (9%)

Query: 49  LPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
           L +IF VGQ L + +V  +++     GKR+I LSLR S    GL  + V     + A V 
Sbjct: 204 LKSIFAVGQYLRAYVVSTVEESTTGKGKRRIELSLRPSEANTGLEKDDVVPNATVMASVA 263

Query: 108 SIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSS 164
           S++D G+++  G+ +   FL R+ +  +  ID   ++PG +    V S     K+  LS 
Sbjct: 264 SVQDRGFVMDTGIENLGAFLSRSEV--DKTIDEKRLQPGAVFLCQVISKGANGKIAQLSL 321

Query: 165 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
               +           +I   +PG M    V +    G+    + +   T DI H     
Sbjct: 322 QQKKIGNPKNLPTDATTIKTFLPGTMTDVLVSNTDRRGLAGKIMGHLDVTADIIHSGVGP 381

Query: 225 PTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL------------HNRAPPSH 270
              +    Y    +  AR++   P +R   +G++L P++               + P   
Sbjct: 382 AGVSLDTAYKIGSRAKARVICNFPGAREPKLGISLLPHITTLEKKRSTKSTDSKKNPTQV 441

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGS 327
           + +  + +   V  V+  +GL +DI    +S   +V IS V + +V  L +    YK GS
Sbjct: 442 LPISSLVETCTVRHVEADIGLFVDIGIPGLS--GFVHISRVKDGKVEALYESSGPYKAGS 499

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IV 382
             + R++G+  ++GL     + S  E       DV  G VV  ++  + VD  G    IV
Sbjct: 500 EHKGRVVGYNEIDGLFQISFEKSVLEQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIV 559

Query: 383 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 440
           +   G+    P  H+S+  +  P KKF+ G ++  RVL   +  K++ +T KKT+V S+ 
Sbjct: 560 KVAEGISGFVPEQHLSDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEA 619

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
            ++ SY E T  +   G I K+   G  ++F+  VQGF P SE+      +P   + +GQ
Sbjct: 620 PVVKSYDEVTVGMQIPGTIIKVLSSGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQ 679

Query: 501 VVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY 554
           VV   ++   P  +R+ +S      F ++     +   ++L  +VS  V   T + V V 
Sbjct: 680 VVSIHVLDVQPEDKRLVVSCKDPSAFGLEKQNALKK--LQLSDVVSAKVTQKTEDQVFVE 737

Query: 555 VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-----------LDNESSNL 603
            +A    K TI   HL D        KS  K  Y F ++ V            D+    +
Sbjct: 738 -LADSQLKATISVGHLTD--------KSNSKNQYAFKRIAVGQTLSDLVIIEKDDNRRVI 788

Query: 604 LLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
           +LS K SL+++++   L +         +V G+V NI  T  FV+F G LT   P+++
Sbjct: 789 VLSHKPSLLDASKNRTLLTSFEKAKEGKIVAGFVRNITVTAVFVQFAGNLTALLPKAR 846



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 161/395 (40%), Gaps = 57/395 (14%)

Query: 929  VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
            VG    A +    P  L +       GRI+  E +DD S  + +L +NF IG  +  R+ 
Sbjct: 1018 VGDTHVAFVNNSSPQHLWVNLSPSVRGRINAMEASDDLSQ-LNDLEANFPIGSALKVRVT 1076

Query: 989  A---KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1045
            A   ++N+ D+        S     +T S +   ++             G V KV+    
Sbjct: 1077 AVDVRNNRLDLSA----RSSNSSDAVTWSALKQNMVL-----------PGRVTKVNERQV 1121

Query: 1046 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1105
            L+ +S  +   + + D   +   +    +R   G  V   V+ ++   K LRL  RP + 
Sbjct: 1122 LVKLSEAVSGPVHLPDMTDDFDTINTLNQR--KGDIVRVSVVELDSSNKRLRLSTRPSR- 1178

Query: 1106 GISDKTVDISNDNMQ--TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1163
             I   T+ I +  +   + +  GDIV G +  +     GL V +G  +   V  + L + 
Sbjct: 1179 -IMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSD--KGLFVLLGGQVTALVKISNLSDR 1235

Query: 1164 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1223
             + +     D  Q D        Q VK +V+ + +  R   HVE+SL+SS+         
Sbjct: 1236 YIKE---WKDHFQVD--------QLVKGRVVAVDKLTR---HVEMSLKSSV--------- 1272

Query: 1224 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGY 1281
             +  D   P  +     D+    +V G V+ V   G FI++  S  +      S +++  
Sbjct: 1273 -VDEDYTPPTTY----NDIQEGQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQA 1327

Query: 1282 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
            V+   K +  G  V  RVLSV+   +RV   LK S
Sbjct: 1328 VKDATKLYKEGDAVKARVLSVDAEKRRVTFGLKPS 1362



 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 160/368 (43%), Gaps = 46/368 (12%)

Query: 89   KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGI 138
            K LSLE V+ G    A+V +       ++   PS  G +            N+L  N  I
Sbjct: 1009 KPLSLEDVKVGDTHVAFVNNSSPQHLWVNLS-PSVRGRINAMEASDDLSQLNDLEANFPI 1067

Query: 139  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 198
                G  L+  V ++D     + LS+     S  VT     +  ++++PG     RV  +
Sbjct: 1068 ----GSALKVRVTAVDVRNNRLDLSARSSNSSDAVT--WSALKQNMVLPG-----RVTKV 1116

Query: 199  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK--VNARILFVDPTSRAVGLT 256
             E  V++      +G V +  + + F T N     NQ K   V   ++ +D +++ + L+
Sbjct: 1117 NERQVLVKLSEAVSGPVHLPDMTDDFDTIN---TLNQRKGDIVRVSVVELDSSNKRLRLS 1173

Query: 257  LNP-YLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVT 307
              P  ++ +  P    ++ D+   D   +VR       D+GL +LL    T     A V 
Sbjct: 1174 TRPSRIMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVT-----ALVK 1228

Query: 308  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKP 364
            IS++++  +++ +  ++    V+ R++    L       LK+S  +       T++D++ 
Sbjct: 1229 ISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQE 1288

Query: 365  GMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
            G VV GKV  V+ FGA +   G   V  LC    M+E  +    K +K G  +  RVL V
Sbjct: 1289 GQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSV 1348

Query: 423  KSKRITVT 430
             +++  VT
Sbjct: 1349 DAEKRRVT 1356



 Score = 63.2 bits (152), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 139/321 (43%), Gaps = 35/321 (10%)

Query: 409  FKVGAELVFRV--LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 466
            F +G+ L  RV  + V++ R+ ++ + +   S  A+  +++     ++  G +TK+ +  
Sbjct: 1065 FPIGSALKVRVTAVDVRNNRLDLSARSS--NSSDAV--TWSALKQNMVLPGRVTKVNERQ 1120

Query: 467  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 526
              V+    V G     ++  D     +     G +V+  ++    +++R+ LS   +P+R
Sbjct: 1121 VLVKLSEAVSGPVHLPDMTDDFDTINTLNQRKGDIVRVSVVELDSSNKRLRLS--TRPSR 1178

Query: 527  VSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 574
            +    L            +  G +V G V  V+   +  +V+  G     +   +L+D  
Sbjct: 1179 IMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSDKGL--FVLLGGQVTALVKISNLSDRY 1236

Query: 575  EHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 629
                      K  ++ DQL+      +D  + ++ +S K S+++     P+  + I    
Sbjct: 1237 IKE------WKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQ 1290

Query: 630  VVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
            VV G V  + E G F+   G   ++G   RS+  +    D +K Y  G +V++ +L V++
Sbjct: 1291 VVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSVDA 1350

Query: 688  ETGRITLSLKQSCCSSTDASF 708
            E  R+T  LK S     D+  
Sbjct: 1351 EKRRVTFGLKPSLFEDVDSDM 1371



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 138/309 (44%), Gaps = 37/309 (11%)

Query: 1126 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            G +V   I K++    GV GL+V++   + G V    L ++ +  P     E +F     
Sbjct: 537  GAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHLSDVRLQHP-----EKKFR---- 587

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
              +G  VK +VL  +   +    + L+L+ ++              V++    ++  +++
Sbjct: 588  --QGMKVKARVLSTNLDKK---QMRLTLKKTI--------------VNSEAPVVKSYDEV 628

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
            +  M + G +  V S G  I     +   + +S +S+ Y++ P++ F IG++V+  VL V
Sbjct: 629  TVGMQIPGTIIKVLSSGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDV 688

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
            +P  KR+ V+ K  D       + N L  L + D+V  ++ +     +F+ + ++ L   
Sbjct: 689  QPEDKRLVVSCK--DPSAFGLEKQNALKKLQLSDVVSAKVTQKTEDQVFVELADSQLKAT 746

Query: 1363 CHVSELSEDHVDNIETIYR---AGEKVK-VKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
              V  L++      +  ++    G+ +  + I++ D  +R I L  K S      +   +
Sbjct: 747  ISVGHLTDKSNSKNQYAFKRIAVGQTLSDLVIIEKDDNRRVIVLSHKPSLLDASKNRTLL 806

Query: 1419 SSEEESDEA 1427
            +S E++ E 
Sbjct: 807  TSFEKAKEG 815



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 154/354 (43%), Gaps = 37/354 (10%)

Query: 15   LVICLPGGLRGLARAADALDPILD-NEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEI 73
            L + L   +RG   A +A D +   N++EAN        F +G  +   V  +D     +
Sbjct: 1034 LWVNLSPSVRGRINAMEASDDLSQLNDLEAN--------FPIGSALKVRVTAVD-----V 1080

Query: 74   GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG--------LPSFTG 125
               ++ LS R S     ++   +++ MVL   V  + +   ++           LP  T 
Sbjct: 1081 RNNRLDLSARSSNSSDAVTWSALKQNMVLPGRVTKVNERQVLVKLSEAVSGPVHLPDMT- 1139

Query: 126  FLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLKGISID 183
                ++    + ++ + G +++  V  +D + K + LS+ P  +  S    KD +   + 
Sbjct: 1140 ----DDFDTINTLNQRKGDIVRVSVVELDSSNKRLRLSTRPSRIMSSTLPIKDKEISDVS 1195

Query: 184  LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 243
             L  G +V   V+++ + G+ +      T  V I +L + +    WK+ +   + V  R+
Sbjct: 1196 QLDAGDIVRGFVKNVSDKGLFVLLGGQVTALVKISNLSDRY-IKEWKDHFQVDQLVKGRV 1254

Query: 244  LFVDPTSRAVGLTLNPYLL-HNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 299
            + VD  +R V ++L   ++  +  PP+    ++ G +    KV +V+     +L   S  
Sbjct: 1255 VAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQVV-TGKVRKVEEFGAFILIDGSDN 1313

Query: 300  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 353
            VS   +   S +AE+ V+   K YKEG  V+ R+L     +   T  LK S FE
Sbjct: 1314 VSGLCHR--SQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRVTFGLKPSLFE 1365



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 38/223 (17%)

Query: 596  LDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
            LD+ +  L LS + S I S+  LP      SD S +    +V G+V N+ + G FV   G
Sbjct: 1163 LDSSNKRLRLSTRPSRIMSST-LPIKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGG 1221

Query: 650  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
            ++T     S   D    +    + V Q V+  ++ V+  T  + +SLK        +S +
Sbjct: 1222 QVTALVKISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLK--------SSVV 1273

Query: 710  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 769
             E +        +Q                 G V+ GKV +  +FG  +  +   +V G 
Sbjct: 1274 DEDYTPPTTYNDIQE----------------GQVVTGKVRKVEEFGAFILIDGSDNVSGL 1317

Query: 770  ITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 805
                Q+A   V+        G  ++A +L V   +R V   LK
Sbjct: 1318 CHRSQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRVTFGLK 1360



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 22/181 (12%)

Query: 533 VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 587
           V LG++V+  ++  VV    V  ++  +A+G S G +P +HL+D  L+H         P 
Sbjct: 534 VPLGAVVTCEIEKVVVDERGVSGLIVKVAEGIS-GFVPEQHLSDVRLQH---------PE 583

Query: 588 YEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 640
            +F Q       +L  + +   + L+ K +++NS   +      +     + G +  ++ 
Sbjct: 584 KKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLS 643

Query: 641 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
           +G  ++F G + GF P S+  +    D  + + +GQ V  ++LDV  E  R+ +S K   
Sbjct: 644 SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPS 703

Query: 701 C 701
            
Sbjct: 704 A 704



 Score = 47.4 bits (111), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 135/315 (42%), Gaps = 35/315 (11%)

Query: 915  TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 974
            +S+S  A   S+     ++   +T++   ++ +K      G +H+ ++ DD  + +  L 
Sbjct: 1091 SSNSSDAVTWSALKQNMVLPGRVTKVNERQVLVKLSEAVSGPVHLPDMTDD-FDTINTL- 1148

Query: 975  SNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPS--MLTVSEIGSKLLFEECDVSIG 1030
             N + G  V   ++    SNK          LS +PS  M +   I  K + +   +  G
Sbjct: 1149 -NQRKGDIVRVSVVELDSSNK-------RLRLSTRPSRIMSSTLPIKDKEISDVSQLDAG 1200

Query: 1031 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1090
              V G+V  V ++   + +   + A + I  S      ++E++  F + + V G V++++
Sbjct: 1201 DIVRGFVKNVSDKGLFVLLGGQVTALVKI--SNLSDRYIKEWKDHFQVDQLVKGRVVAVD 1258

Query: 1091 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1150
               KL R V    +  + D+  D +       I EG +V G++ K+      +++    +
Sbjct: 1259 ---KLTRHVEMSLKSSVVDE--DYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDN 1313

Query: 1151 LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI-SRTVRGTFHVELS 1209
            + G  H +++    V            D    Y EG  VK +VL + +   R TF ++ S
Sbjct: 1314 VSGLCHRSQMAEQAVK-----------DATKLYKEGDAVKARVLSVDAEKRRVTFGLKPS 1362

Query: 1210 LRSSLDGMSSTNSSD 1224
            L   +D  S  ++SD
Sbjct: 1363 LFEDVD--SDMDNSD 1375



 Score = 41.2 bits (95), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 102/477 (21%), Positives = 189/477 (39%), Gaps = 80/477 (16%)

Query: 945  LRLKFGI-GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1003
            L +  GI G  G +HI+ V D K   +      +K G     R++   N+ D     L++
Sbjct: 462  LFVDIGIPGLSGFVHISRVKDGKVEALYESSGPYKAGSEHKGRVVG-YNEIDG----LFQ 516

Query: 1004 LSIKPSMLTVS-------EIGSKLLFEECDVSIGQR-VTGYVYKVDNEWALLTISRHLKA 1055
            +S + S+L           +G+ +  E   V + +R V+G + KV    +     +HL  
Sbjct: 517  ISFEKSVLEQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHL-- 574

Query: 1056 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1115
                         LQ  +++F  G  V   VLS N +KK +RL L+        KT+  S
Sbjct: 575  ---------SDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLK--------KTIVNS 617

Query: 1116 NDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
               +     E   G  + G I K+LS   G ++Q    + G +  +E+    +       
Sbjct: 618  EAPVVKSYDEVTVGMQIPGTIIKVLS--SGAIIQFFGTVQGFLPISEMSEAYIK------ 669

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS-SLDGMSSTNSSDLSTDVDT 1231
                 DP   +  GQ V   VL++    +    + +S +  S  G+   N+         
Sbjct: 670  -----DPKEHFRIGQVVSIHVLDVQPEDK---RLVVSCKDPSAFGLEKQNA--------- 712

Query: 1232 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGYVESPEKEFP 1290
                   ++ L  + +V   V   T    F+ L+  +L A + + +L+D    + + ++ 
Sbjct: 713  -------LKKLQLSDVVSAKVTQKTEDQVFVELADSQLKATISVGHLTDK--SNSKNQYA 763

Query: 1291 IGKLVAGRVLS----VEPLSKRVEVTLKTSDS---RTASQSEINNLSNLHVGDIVIGQIK 1343
              ++  G+ LS    +E    R  + L    S    + +++ + +      G IV G ++
Sbjct: 764  FKRIAVGQTLSDLVIIEKDDNRRVIVLSHKPSLLDASKNRTLLTSFEKAKEGKIVAGFVR 823

Query: 1344 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
             +    +F+     NL  L   + L  D  D  +      + ++VKI+ V  + +RI
Sbjct: 824  NITVTAVFVQFAG-NLTALLPKARLPADVQDQPDFGMHKHQSIEVKIVSVIPDHQRI 879


>gi|239789556|dbj|BAH71394.1| ACYPI007311 [Acyrthosiphon pisum]
          Length = 353

 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/281 (39%), Positives = 168/281 (59%), Gaps = 4/281 (1%)

Query: 1522 IRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            +R  EE L + +  P+  D F+RLV S+PNSSF+WIKYMA  L   +VEKAR+ A+RAL 
Sbjct: 71   LRKVEEELTQIETNPQNADHFDRLVLSNPNSSFIWIKYMACHLQATEVEKARATAKRALS 130

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
             I+ REE EKLNIW A  NLEN YG   +E+  +    AL+  D  ++++ +L ++  + 
Sbjct: 131  IIDTREEQEKLNIWTALLNLENLYGT--KESFKQTMDEALRSNDEYQIYIKILDIFAESN 188

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFIS 1699
            + K  +EL+ K+ +KF+ S   +L       K  + G  + ++Q+AL +LP   H+  IS
Sbjct: 189  KLKELEELITKINRKFRDSLDAYLHCATVYFKLNKPGKARFILQKALSNLPTKSHVTMIS 248

Query: 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759
            + A++E  +G  +  +++FE +L+ YP R D+WS+Y+D  I+   +DL R   ERA    
Sbjct: 249  RFALVENSDGSPEEAQTLFEHVLTSYPSRIDVWSLYVDMLIKFNRIDLARHALERATIQK 308

Query: 1760 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
            L PKKMK LF K++  E   G  E ++ VK+    YV+  L
Sbjct: 309  LAPKKMKSLFNKWMMLEGKYGTSESVDKVKECMNNYVDLIL 349


>gi|124088569|ref|XP_001347148.1| Pre-rRNA processing protein RRP5 [Paramecium tetraurelia strain d4-2]
 gi|145474227|ref|XP_001423136.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057537|emb|CAH03521.1| Pre-rRNA processing protein RRP5, putative [Paramecium tetraurelia]
 gi|124390196|emb|CAK55738.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1444

 Score =  201 bits (512), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 164/265 (61%), Gaps = 10/265 (3%)

Query: 1540 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1599
            E+E+ + ++PNS+ +WI+++A+      +E AR++ ERAL+ IN   E E+LN+W AY N
Sbjct: 1165 EYEKKILTNPNSAVIWIEFVAYAAENEGIESARNVIERALRVINFSNELERLNLWTAYLN 1224

Query: 1600 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1659
            LE  +G+  E+ ++ +F+R  Q CD KK+H+ L+ +Y + E+  L  EL    ++K+K S
Sbjct: 1225 LEFNFGS--EDNLINIFKRGCQNCDGKKLHVKLINIYRKAEKVDLTVELSRSFVQKYKQS 1282

Query: 1660 CKVWLRRVQRLLKQQQ--------EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1711
            CK W+  +Q L++ Q+           +  + RA+  L + K +K +S    L+F+N   
Sbjct: 1283 CKSWMEFLQSLMEWQKVHDDENPLYSFKDTLNRAVQCLKKSKQVKLLSFYGRLQFQNNQI 1342

Query: 1712 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771
            + G++ +E IL +   RTDLWS YLD  I+    D++R +F++AI  +  P+K+KFLFKK
Sbjct: 1343 EEGKTTYETILDKNSSRTDLWSQYLDLVIKHCQPDVVRSIFQKAIHNNKKPRKIKFLFKK 1402

Query: 1772 YLEYEKSVGEEERIEYVKQKAMEYV 1796
             LEYE   G+   I+ VK++A ++V
Sbjct: 1403 QLEYENQYGDSATIQKVKEQAEQWV 1427



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 29/227 (12%)

Query: 360 SDVKPGMVVKGKVIAV----DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           SD+  G +VKG V  V    DS+  +++      A+ P   MS++ +  P  KF+VG++L
Sbjct: 426 SDLSVGAIVKGVVKQVLLKEDSYSVLLKINDNFNAILPSIQMSDYPLTNP-PKFRVGSKL 484

Query: 416 VFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 473
             R+L +  +   I VT K TL+ + + +  S  +       +G+  K  ++G  V+F+ 
Sbjct: 485 RVRILQIDEQHNNIIVTMKPTLL-TDIKVFKSLDDINAGDTLYGYTIKKLENGILVKFFQ 543

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSED 530
            + GF   S L LD G  P  +   GQ++K  +     +  ++ LS      K  +V+E 
Sbjct: 544 NIVGFL--SNLSLD-GQNPDDIKD-GQIIKVYVKYINQSENKLLLSLKKIDPKQKQVTEG 599

Query: 531 DL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 565
                         + LG  V  VV  +  N  VVYV  K    G I
Sbjct: 600 QTSNVPLTKQVKIKLNLGEKVQCVVSAIKNN--VVYVNLKDGKFGRI 644



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 651
           ++L +D + +N++++ K +L+   +   S    I+    ++GY    +E G  V+F   +
Sbjct: 487 RILQIDEQHNNIIVTMKPTLLTDIKVFKS-LDDINAGDTLYGYTIKKLENGILVKFFQNI 545

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            GF   + ++DGQ  D  K    GQ ++  +  +N    ++ LSLK+
Sbjct: 546 VGFLS-NLSLDGQNPDDIKD---GQIIKVYVKYINQSENKLLLSLKK 588


>gi|219126210|ref|XP_002183355.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405111|gb|EEC45055.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 300

 Score =  201 bits (512), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 115/282 (40%), Positives = 177/282 (62%), Gaps = 17/282 (6%)

Query: 1533 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1592
            D P T  +FERL+ SSPNSS +WI+YMAF L++AD+  AR +AERA Q I  R+E EKLN
Sbjct: 20   DNPETASDFERLLASSPNSSELWIRYMAFHLTLADIPAAREVAERAFQRIEFRQEGEKLN 79

Query: 1593 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER--TEQNKL-----A 1645
            +W A   LE +YG+     +    +RA Q+ +PKK+HL +  + E+  TE++ +      
Sbjct: 80   VWCALLTLELKYGSST--CLKATIERACQHNNPKKIHLRVCEMMEKEATEKSSVGTTERT 137

Query: 1646 DELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1704
            D++  KM KKFK    VWL   + LL+  + E   A+ +RALLSLP +KH++ +S+ A L
Sbjct: 138  DDMFSKMCKKFKSKKTVWLAHAKYLLRLGRHEEAYALSKRALLSLPAYKHVELMSKFAQL 197

Query: 1705 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER-------AIS 1757
             F+   A++ R++F+G+L + PKR D+  +Y+D+E++ G+ +  R LFE+       ++ 
Sbjct: 198  VFEYNSAEKARTLFDGLLQKNPKRLDILFVYVDKEVKYGEAETARSLFEKVAGKEIDSLQ 257

Query: 1758 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1799
            + L  K+MK LFKK+  +E+  G  +  E VK+ A  YVES+
Sbjct: 258  MKLSDKQMKSLFKKWFSFEEQHGTAKTQERVKEAARAYVESS 299


>gi|328697835|ref|XP_003240456.1| PREDICTED: protein RRP5 homolog [Acyrthosiphon pisum]
          Length = 353

 Score =  201 bits (511), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/278 (39%), Positives = 167/278 (60%), Gaps = 4/278 (1%)

Query: 1522 IRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            +R  EE L + +  P+  D F+RLV S+PNSSF+WIKYMA  L   +VEKAR+ A+RAL 
Sbjct: 71   LRKVEEELTQIETNPQNADHFDRLVLSNPNSSFIWIKYMACHLQATEVEKARATAKRALS 130

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
             I+ REE EKLNIW A  NLEN YG   +E+  +    AL+  D  ++++ +L ++  + 
Sbjct: 131  IIDTREEQEKLNIWTALLNLENLYGT--KESFKQTMDEALRSNDEYQIYIKILDIFAESN 188

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFIS 1699
            + K  +EL+ K+ +KF+ S   +L       K  + G  + ++Q+AL +LP   H+  IS
Sbjct: 189  KLKELEELITKINRKFRDSLDAYLHCATVYFKLNKPGKARFILQKALSNLPTKSHVTMIS 248

Query: 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759
            + A++E  +G  +  +++FE +L+ YP R D+WS+Y+D  I+   +DL R   ERA    
Sbjct: 249  RFALVENSDGSPEEAQTLFEHVLTSYPSRIDVWSLYVDMLIKSNRIDLARHALERATIQK 308

Query: 1760 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            L PKKMK LF K++  E   G  E ++ VK+    YV+
Sbjct: 309  LAPKKMKSLFNKWMMLEGKYGTSESVDKVKECMNNYVD 346


>gi|195451940|ref|XP_002073142.1| GK13970 [Drosophila willistoni]
 gi|194169227|gb|EDW84128.1| GK13970 [Drosophila willistoni]
          Length = 1379

 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/311 (36%), Positives = 182/311 (58%), Gaps = 11/311 (3%)

Query: 1496 TDEAKTIDEKNNRH------AKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSS 1548
            +DEA+  +E++ +       AK K + + EQ +R  EER  + DA P T D++ERLV + 
Sbjct: 1062 SDEAEETEEQDPKKRRLSSKAKAKAQVKEEQRLREIEERNADPDAKPETIDQYERLVLAQ 1121

Query: 1549 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1608
            PN+S  W++Y+AF+LS  ++EKAR +A RA+ TI+ RE  E  NIW A  N+E  Y +  
Sbjct: 1122 PNNSLTWLQYIAFLLSNTEIEKARVLARRAISTISFRESQELRNIWSALLNIELTYNSQN 1181

Query: 1609 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW-LRRV 1667
             + V+K    AL   DP +++L+L+ +  +  Q +    +L  ++ KFK   K+W L   
Sbjct: 1182 FDDVLK---EALNSNDPLEIYLSLVDILRKNNQKERLSGVLVTILNKFKSELKIWSLAAD 1238

Query: 1668 QRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1727
                  + + V A++QRAL +LP   HI  I   A L  K+   D  +++ + +++ YPK
Sbjct: 1239 AYFWLGRSDQVHALLQRALRTLPNSDHINCIVAFAKLFAKHDAHDMAQTLLDDVVTSYPK 1298

Query: 1728 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1787
            RTD+W +Y+D  I+   +D  R + ERA+   L P KM+ ++KKYL+ E++ G E  +  
Sbjct: 1299 RTDIWLVYVDMLIKAQLIDAARNVLERAVVQKLRPNKMQVIYKKYLQLEENFGTEAHVAN 1358

Query: 1788 VKQKAMEYVES 1798
            VKQ+A ++V +
Sbjct: 1359 VKQQAEQWVRN 1369



 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 239/507 (47%), Gaps = 40/507 (7%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEI--EANEDNLLPTIFHV 55
           M + GVV E +   + + LPG L   A  AD   A   +    +  + +E + L  +FHV
Sbjct: 78  MLVMGVVRETSATSVQVALPGRLTARALVADISEAYAHVAKAAMAGDTSEYHDLTELFHV 137

Query: 56  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
           GQ+V    ++   D+ E  +  + LSLR + ++  L   ++++G + +  +  I++HG+I
Sbjct: 138 GQIVYGRAIK--TDQLEAKRITVILSLRPADVHSQLQHTSIKKGFIFSGAIAEIQEHGFI 195

Query: 116 LHFGLPSFTGFLPRNNLAENS-GIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 174
           +  G+     F+P +   EN   +     L ++ +    +++     + SD +   K   
Sbjct: 196 IETGIQGLQAFVPHDESNENQFHVGQLAFLKVKQITHDKNQSTCTCQIISDQN---KLKI 252

Query: 175 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDY 233
           K     ++D L+PG +V  +V   L++G+  S L   F   ++  HL +   T     DY
Sbjct: 253 KSQNETNLDYLLPGSIVRFKVSKQLKDGLKGSILNENFVAYINEHHLAHPLHTL---QDY 309

Query: 234 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----------SHVKVGDIYDQSKV 282
           + +++ NAR+L+  P ++ V LTLN   +  +A P           + +K G I +++KV
Sbjct: 310 DLNEEYNARVLYTMPLTKLVYLTLN---VEIKAGPEQEVEDEAEDQTELKKGSIVEKAKV 366

Query: 283 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLE 340
           +R+  G G++L +        +Y  I    +    K E   KY   +  +VR+LG+  +E
Sbjct: 367 LRLASG-GVILLLNKQSKGLISYSCIKSHYKGNYDKDEVLSKYGRKTKHKVRVLGYDLIE 425

Query: 341 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK-ALCPLPHMSE 399
            L       +     ++T  D+ PG +V  +++  D     ++  GG    L  +  + +
Sbjct: 426 SLYYCSDDPNVVNEKLYTLEDLNPGDLVSARLVKQD-----IKINGGWSLKLGKINGIID 480

Query: 400 FEIVKPGKKFKVGAELVFRVLGVKSKRIT--VTHKKTLVKSKLAILSSYAEATDRLITHG 457
              + PG++++VG  +  R+L V  +R T  +T++   +     +L++   A +  +  G
Sbjct: 481 ALYLAPGQRYEVGQRVRCRILDVNLERRTCYLTNRPEYLSKSAKLLTNLQSAQEGQVFTG 540

Query: 458 WITKIEKHGCFVRFYNGVQGFAPRSEL 484
            + K E +   ++F NG++G   + +L
Sbjct: 541 TVVKNELNFFLIKFCNGLKGVLYKQQL 567


>gi|195151847|ref|XP_002016850.1| GL21990 [Drosophila persimilis]
 gi|194111907|gb|EDW33950.1| GL21990 [Drosophila persimilis]
          Length = 1433

 Score =  199 bits (505), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 189/329 (57%), Gaps = 19/329 (5%)

Query: 1480 DEQPDMDNGISQNQGHTDEAKTIDEKNNR-HAKKKEKEE--REQEIRAAEERLLEKDAP- 1535
            ++  D  +   +++  T E +T   K  R  AK+K K E   EQ +R  EER  +  A  
Sbjct: 1109 NQTKDASSDEEEDEPTTAETQTNSNKKKRLSAKEKAKAEVKEEQRLREIEERNADPQARL 1168

Query: 1536 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1595
             T D++ERLV + PN+S  W+KY++F+LS  ++EKAR +A RA+ TI+ RE  E  NIW 
Sbjct: 1169 ETIDQYERLVIAQPNNSMSWLKYISFLLSNTEIEKARDLARRAIATISFREPQELRNIWS 1228

Query: 1596 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1655
            A  ++E  YGN  +E    V + ALQ  DP + +++++ + ++  Q +    +L  ++KK
Sbjct: 1229 ALLSMELAYGNNFDE----VLKEALQSNDPLETYISVVDILKKNNQRERLSSVLVILLKK 1284

Query: 1656 FKHSCKVWLRRVQRLLKQ------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1709
            FK   KVW     RL+ +      + + V +++QRAL SLP  +HI  I   A L   N 
Sbjct: 1285 FKSEPKVW-----RLVAEAYFWLGKSDQVHSLLQRALHSLPNPEHINLIVAFAKLYENND 1339

Query: 1710 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1769
              D  +++ + I++ YPKR D+WS+Y+D  I+ G +D  R + +RA+   L P+KM+ ++
Sbjct: 1340 DKDMAQTLLDDIVTSYPKRIDIWSVYVDMLIKTGQIDSARNVLDRAVQQKLKPEKMRVIY 1399

Query: 1770 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            KKYL  EK  G +     V Q+A E+V++
Sbjct: 1400 KKYLTLEKKHGSKATEAKVMQEAEEWVKN 1428



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 186/856 (21%), Positives = 365/856 (42%), Gaps = 83/856 (9%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI--EANEDNLLPTIFHV 55
           M + GVV E +   L I +PG +     +   ++A   +  + +  E ++ + L  +F V
Sbjct: 75  MLVMGVVKESSAISLQIAIPGRMTARTQVGEISEAYTRVAQSAMAGETSDYHDLTELFPV 134

Query: 56  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
           G +V    ++ D  K    +  + LSL+ + +++ L  + +++G V +  +    +HGY+
Sbjct: 135 GTIVYGKAIKTD--KPGSNRTSVLLSLKPADVHERLHHKNIKKGFVFSGAISEALEHGYV 192

Query: 116 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 175
           +  G+   T F+      E +   +  G L      +  + ++V + +S        V +
Sbjct: 193 IETGIQGLTAFVA----CEAAEQTLHVGQL------AFLKVKQVKHDASTSSCTCVHVQQ 242

Query: 176 DLKGI------SIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTN 228
           D   I      ++D ++PG +V  +V   L++G+  S +   FT  V+  H+ N   T  
Sbjct: 243 DALKIKSQNESNLDYILPGSIVRFKVSKHLKDGLKGSIMNESFTAYVNEHHMANALETP- 301

Query: 229 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP-----PSHVKVGDIYDQSKVV 283
              DY  +++ + R+L+V P ++ V LTLN  +              +K G I +++KV+
Sbjct: 302 --EDYELNEEYHTRVLYVMPLTKLVYLTLNLDIKQTAEDVEDQVEEPLKPGSIVEKAKVL 359

Query: 284 RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEG 341
           R+  G G++L +     +  +Y +I    +    K E   KY   +  +VR+LG+  +E 
Sbjct: 360 RLGSG-GVVLLLNKKLKAILSYGSIKANFKGNYDKDEVLSKYGRKTKHKVRVLGYDMIES 418

Query: 342 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 401
           L       +     +++  D+ PG +V  K+I  D      +  G    +  L  + +  
Sbjct: 419 LYYCSDDPNLVNEKLYSLEDLNPGDIVTAKMIKKDE-----KINGWTVKIGRLNGIIDQL 473

Query: 402 IVKPGKKFKVGAELVFRVLGVKSKRIT--VTHKKTLVKSKLAILSSYAEATDRLITHGWI 459
            +    +++ G  +  RVL +   R T  ++++   ++    +L+S + A +  +  G +
Sbjct: 474 YLANNLRYEAGQRVRCRVLDISLDRKTCYLSNRSEYLRKDAKLLTSLSAAHEGGVYLGTV 533

Query: 460 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINL 518
            + E     V+F +G++G   R  L      E SS+ +  GQ    RI+S      +I L
Sbjct: 534 VRCEPGYILVKFGDGIKGVLHRQNLS-----EKSSLSFFEGQTTTFRILSR--NKDQITL 586

Query: 519 SFMMKPTRVSEDDLVKL-GSLVSGV-VDVVTPNAVVVYVIAKGYSK-------GTIPTEH 569
           +      ++ E   V++  +L +G+ + +  P             +       G IP+  
Sbjct: 587 TLPEDKFQLGEICPVEITNALDAGLEMKITYPADEDEDADQDDEQEPKIEEFLGLIPSSL 646

Query: 570 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 629
           L+DH+E     K +   G   +   +  N  S  L    Y     + QL +D   +    
Sbjct: 647 LSDHVELIAAQKRIHPVGSHTEAACIGQNIFS--LRDVPY----FSGQLTTDWKTVQVGD 700

Query: 630 VVHGYVCN-----IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +V  YV N     +++    +R   ++     +   ++  RA L       Q +   +L 
Sbjct: 701 IVRAYVKNVSTDQVVDLMVAIRDYNKVVKVHVKMLRLNAVRA-LPVDLTPDQLLYVKVLS 759

Query: 685 VNSETGRITLSLKQSCCSSTD----ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGFI 739
            + ET  +T+S K +   S D    A  ++ +F  +E + +    K   + + K+  G  
Sbjct: 760 KSVETKTLTVSAKLTDVWSGDLGETAKLVESYF--DELMQIRSVLKEKSAPIAKFDLGKT 817

Query: 740 IGSVIEGKVHESNDFGVVVSFEEHSDVYG-FITHHQLAGATV--ESGSVIQAAILDVAKA 796
           I  + +G    SND+  + + E    V    ++    AG+ V  + GS   A IL +  A
Sbjct: 818 ISVIFKGIDPVSNDW--LYTVEGSPKVKALLVSSLAPAGSAVTPQVGSKQPAVILWIDYA 875

Query: 797 ERLVDLSLKTVFIDRF 812
           E L+ +S K V I+  
Sbjct: 876 EDLLLVSTKKVDIEHI 891


>gi|125776020|ref|XP_001359140.1| GA19088 [Drosophila pseudoobscura pseudoobscura]
 gi|54638882|gb|EAL28284.1| GA19088 [Drosophila pseudoobscura pseudoobscura]
          Length = 1433

 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 189/329 (57%), Gaps = 19/329 (5%)

Query: 1480 DEQPDMDNGISQNQGHTDEAKTIDEKNNR-HAKKKEKEE--REQEIRAAEERLLEKDAP- 1535
            ++  D  +   +++  T E +T   K  R  AK+K K E   EQ +R  EER  +  A  
Sbjct: 1109 NQTKDASSDEEEDEPTTAETQTNSNKKKRLSAKEKAKAEVKEEQRLREIEERNADPQARL 1168

Query: 1536 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1595
             T D++ERLV + PN+S  W+KY++F+LS  ++EKAR +A RA+ TI+ RE  E  NIW 
Sbjct: 1169 ETIDQYERLVIAQPNNSMSWLKYISFLLSNTEIEKARDLARRAIATISFREPQELRNIWS 1228

Query: 1596 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1655
            A  ++E  YGN  +E    V + ALQ  DP + +++++ + ++  Q +    +L  ++KK
Sbjct: 1229 ALLSMELVYGNNFDE----VLKEALQSNDPLETYISVVDILKKNNQRERLSSVLVILLKK 1284

Query: 1656 FKHSCKVWLRRVQRLLKQ------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1709
            FK   KVW     RL+ +      + + V +++QRAL SLP  +HI  I   A L   N 
Sbjct: 1285 FKSEPKVW-----RLVAEAYFWLGKSDQVHSLLQRALRSLPNPEHINLIVAFAKLYENND 1339

Query: 1710 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1769
              D  +++ + I++ YPKR D+WS+Y+D  I+ G +D  R + +RA+   L P+KM+ ++
Sbjct: 1340 DKDMAQTLLDDIVTSYPKRIDIWSVYVDMLIKTGQIDSARNVLDRAVQQKLKPEKMRVIY 1399

Query: 1770 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            KKYL  EK  G +     V Q+A E+V++
Sbjct: 1400 KKYLTLEKKHGSKATEAKVMQEAEEWVKN 1428



 Score = 97.1 bits (240), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 188/855 (21%), Positives = 367/855 (42%), Gaps = 85/855 (9%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI--EANEDNLLPTIFHV 55
           M + GVV E +   L I +PG +     +   ++A   +  + +  E ++ + L  +F V
Sbjct: 75  MLVMGVVKESSAISLQIAIPGRMTARTQVGEISEAYTRVAQSAMAGETSDYHDLTELFPV 134

Query: 56  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
           G +V    ++ D  K    +  + LSL+ + +++ L  + +++G V +  +    +HGY+
Sbjct: 135 GTIVYGKAIKTD--KPGSNRTSVLLSLKPADVHERLHHKNIKKGFVFSGAISEALEHGYV 192

Query: 116 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 175
           +  G+   T F+      E +   +  G L      +  + ++V + +S        V +
Sbjct: 193 IETGIQGLTAFVA----CEAAEQTLHVGQL------AFLKVKQVKHDASTSSCTCVHVQQ 242

Query: 176 DLKGI------SIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTN 228
           D   I      ++D ++PG +V  +V  +L++G+  S +   FT  V+  HL N   T  
Sbjct: 243 DALKIKSQNESNLDYILPGSIVRFKVSKLLKDGLKGSIMNESFTAYVNEHHLANALETP- 301

Query: 229 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH------VKVGDIYDQSKV 282
              DY  +++ +AR+L+V P ++ V LTLN   +  RA          +K G I +++KV
Sbjct: 302 --EDYELNEEYHARVLYVMPLTKLVYLTLN-LDIKQRAEDVEEQEEEPLKPGSIVEKAKV 358

Query: 283 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLE 340
           +R+  G G++L +     +  +Y +I    +    K E   KY   +  +VR+LG+  +E
Sbjct: 359 LRLGSG-GVVLLLNKKLKAILSYGSIKANFKGNYDKDEVLSKYGRKTKHKVRVLGYDMIE 417

Query: 341 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
            L       +     +++  D+ PG +V  K+I  D      +  G    +  L  + + 
Sbjct: 418 SLYYCSDDPNLVNEKLYSLEDLNPGDIVTAKMIKKDE-----KINGWTVKIGRLNGIIDQ 472

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRIT--VTHKKTLVKSKLAILSSYAEATDRLITHGW 458
             +    +++ G  +  RVL +   R T  ++++   ++    +L+S + A +  +  G 
Sbjct: 473 LYLANNLRYEAGQRVRCRVLDISLDRKTCYLSNRSEYLRKDAKLLTSLSAAHEGGVYLGT 532

Query: 459 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRIN 517
           + + E     V+F +G++G   R  L      E SS+ +  GQ    RI+S      +I 
Sbjct: 533 VVRCEPGYILVKFGDGIKGVLHRQNLS-----EKSSLSFFEGQTTTFRILSR--NKDQIT 585

Query: 518 LSFMMKPTRVSEDDLVKL-GSLVSGV-VDVVTPNAVVVYVIAKGYSK-------GTIPTE 568
           L+      ++ E   V++  +L +G+ + +  P             +       G IP+ 
Sbjct: 586 LTLPEDKFQLGEICPVEITNALDAGLEMKITYPADEDEDADQDDEQEPKIEEFLGLIPSS 645

Query: 569 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN 628
            L+DH+E     K +   G   +   +  N  S  L    Y     + QL +D   +   
Sbjct: 646 LLSDHVELIAAQKRIHPVGSHTEAACIGQNIFS--LRDVPY----FSGQLTTDWKTVQVG 699

Query: 629 SVVHGYVCN-----IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
            +V  YV N     +++    +R   ++     +   ++  RA L       Q +   +L
Sbjct: 700 DIVRAYVKNVSTDQVVDLMVAIRDYNKVVKVHVKMLRLNAVRA-LPVDLTPDQLLYVKVL 758

Query: 684 DVNSETGRITLSLKQSCCSSTD----ASFMQEHFLLEEKIAMLQSSKHNGSEL-KWVEGF 738
             + ET  +T+S K +   S D    A  ++ +F  +E + +    K   + + K+  G 
Sbjct: 759 SKSVETKTLTVSAKLTDVWSGDLGETAKLVESYF--DELMQIRSVLKEKSAPIAKFDLGK 816

Query: 739 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL---AGATVESGSVIQAAILDVAK 795
            I  + +G    SND+  + + E    V   +        + AT + GS   A IL +  
Sbjct: 817 TISVIFKGIDPVSNDW--LYTVEGSPKVKALLVSSLAPAGSAATPQVGSKQPAVILWIDY 874

Query: 796 AERLVDLSLKTVFID 810
           A+ L+ +S K V I+
Sbjct: 875 ADDLLLVSTKKVDIE 889


>gi|307211267|gb|EFN87453.1| Protein RRP5-like protein [Harpegnathos saltator]
          Length = 1385

 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 200/345 (57%), Gaps = 22/345 (6%)

Query: 1468 RASVPPLEVNLDDEQPDMDNGISQNQGHTDEA-KTIDEKNNRHAKKKEKEEREQE----- 1521
            +  +P +  N D E PD +  ++ ++  +DE  ++  E   +  K    E REQE     
Sbjct: 1042 KPHLPEVPFNWDHE-PDSNRAVAVSETSSDEEEQSTGEPEQKKKKLSSAERREQERQKEH 1100

Query: 1522 -IRAAEE--RLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1578
             IR  E+  RL    AP + DEFE+LV SSPNS+ VW KYMA+ L  A ++K+R++A RA
Sbjct: 1101 EIRQQEKNNRLAGNHAPNSIDEFEKLVLSSPNSALVWTKYMAYNLQ-ATIDKSRAVARRA 1159

Query: 1579 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY-- 1636
            +QTIN +EE + L +W A+ N+E ++G    E++  VFQ A++  D  KV+  +L ++  
Sbjct: 1160 IQTINFQEEQQLLKVWKAWLNMEAKFGT--RESLNDVFQEAVRRADDLKVYTHMLNVFLD 1217

Query: 1637 --ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHK 1693
              ERTE  KL D     M  KFK   ++W+     LLK   ++    ++QRAL SL   +
Sbjct: 1218 MGERTELEKLID----VMTHKFKEKPEMWVDCGAALLKIGLKDKSWHIMQRALKSLRTFQ 1273

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753
            H+  + Q A+LE K G  +R   +FE IL  YPKR D+W  Y+D  ++  D+DL R + +
Sbjct: 1274 HVNLVVQFALLENKLGDKERAHMLFEEILKTYPKRIDVWFTYVDCLVKTEDIDLARKVLK 1333

Query: 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             A+ + LP KKMK LFKKY+ +E++ G  E +  ++Q  + +VE+
Sbjct: 1334 EALCMKLPLKKMKMLFKKYVRFEEAYGTAEDLNRLEQMVINFVEN 1378



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 152/599 (25%), Positives = 282/599 (47%), Gaps = 43/599 (7%)

Query: 7   VAEVNEKDLVICLPGGLRGLARAADALDPILD--------NEIEANEDNLLPTIFHVGQL 58
           ++E+ E +L+I +PGGL G  +  D  +P  D         +++++E   L  ++++G  
Sbjct: 20  ISEITEYELIISIPGGLLGCVKLTDLSEPYTDLLQDIIHTKDVQSDEFKSLSELYNLGDY 79

Query: 59  VSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF 118
           V C V ++D D    GK    LSL   L+ + ++   +  G  +   VKSIEDHGY++  
Sbjct: 80  VVCYVKKIDSD----GKWLYNLSLEPQLINQNVNNTNLVTGTKIVCTVKSIEDHGYVIDT 135

Query: 119 GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKV--VYLSSDPDTVSKCVTKD 176
           G+ +   FL    ++E       PG  +  V++ I    +V  + LS+   TV+K  T D
Sbjct: 136 GIANVRAFLASKYVSEEK--KYFPGNQIMCVIKEIKTVDQVSILTLSAKRKTVNKVSTHD 193

Query: 177 LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 236
           ++  S+D L+PG  +S R+   L NG+ ++F     G ++  +L +  P + + ND    
Sbjct: 194 IE--SLDALMPGTKLSLRITRTLSNGLQVTFGKNNVGYLNRIYLDS--PLSTYVND---- 245

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIP 296
            +V   +L++ PT +    +L      + +    + +G +  ++KV+  +   G++  + 
Sbjct: 246 TEVTGTLLYIMPTVKFAYFSLPT----DASDEDSLPIGGVIRKAKVLYRESN-GIIFKLT 300

Query: 297 STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 356
            + +     +  +DV    + K+   ++ GS  + +++ +  +E L    ++    E   
Sbjct: 301 KSNLRGFVSLHRTDVP---ITKISTVFQPGSVHKCKMISYNWMEHLYVCSMEREILEQKY 357

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           ++ +D++ G  V  K+  VD+    VQ   G +       H+S+  +    K  K G  +
Sbjct: 358 YSLTDLQTGDTVTVKLTKVDTKSGFVQVQVGKICGFVGPEHVSDSGLSGLNK-LKDGDSV 416

Query: 416 VFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 473
             RVL V +  + +  T K++L+KSKL +L    EA      HG I KI K+G  VRFY 
Sbjct: 417 EARVLNVNTDKRNVRFTLKQSLIKSKLPVLQDICEARCGQEYHGTIIKINKYGLLVRFYG 476

Query: 474 GVQGFAPRSELGLDPGCEPSSMYH-VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 532
            V+G+ PRS   LD      +  H +GQ V   I S      ++ L  +    +  +   
Sbjct: 477 DVKGWVPRSV--LDSNTSDMNWNHTIGQTVTVLIDSIEKEEGKMKLRIITGEQKQQQSHN 534

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVI----AKGYSKGTIPTEHLADHLEHATVMKSVIKPG 587
           +K+G L+ G V   +   + + +     ++G   G +P  H++  LE   ++ S   PG
Sbjct: 535 MKVGELIEGTVVESSLEGIHLRICKTNDSEGVVSGFLPAGHMSPCLEIGALLASKCTPG 593



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 107/498 (21%), Positives = 190/498 (38%), Gaps = 91/498 (18%)

Query: 592  QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 651
            ++L ++ +  N+  + K SLI S   +  D          HG +  I + G  VRF G +
Sbjct: 419  RVLNVNTDKRNVRFTLKQSLIKSKLPVLQDICEARCGQEYHGTIIKINKYGLLVRFYGDV 478

Query: 652  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
             G+ PRS  +D   +D++  + +GQ+V   I  +  E G++ L +               
Sbjct: 479  KGWVPRS-VLDSNTSDMNWNHTIGQTVTVLIDSIEKEEGKMKLRIITG------------ 525

Query: 712  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG---KVHESNDF-GVVVSFEEHSDVY 767
                E+K    Q   HN    + +EG ++ S +EG   ++ ++ND  GVV  F     + 
Sbjct: 526  ----EQK----QQQSHNMKVGELIEGTVVESSLEGIHLRICKTNDSEGVVSGFLPAGHMS 577

Query: 768  GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRK 827
              +    L  +    G  I A +  +  +          V + R        ++  K   
Sbjct: 578  PCLEIGALLASKCTPGDTISAYVFSMQPS----------VIMSRTYMTQGEYRSFDK--- 624

Query: 828  REASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS----IGYASVSDYNTQKFPQKQFLN 883
                  L V   +   +  + ++ + + LP  ++S    + Y ++S++      Q  F+ 
Sbjct: 625  ------LKVGDCIPCTIRDITKDGVKVILPIEDYSTFGYVSYKNISNFKRLYIDQILFVK 678

Query: 884  GQSV------IATVMALPS------------SSTAGRLLLLLKAISETETSSSKRAKKKS 925
              ++      +   M+L               S    L L L  +SE  T+   + K  S
Sbjct: 679  ITAINKREKQLTLSMSLKELWDSPVEHGAKMLSAVDVLSLYLNKLSELATNVFYKNKPIS 738

Query: 926  SYDVGSLVQAEITEIKP--LELRLKFGI-GFHGRIHITEVNDDKSNVVENLFSNFKIGQT 982
            S  +G  V  EI  I    L LRLK  + G  G+ H T              S  K+G  
Sbjct: 739  SVTLGQKVTGEIERITKYGLVLRLKDNLMGVVGKDHYT--------------SEHKVGDK 784

Query: 983  VTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDN 1042
            V   I+ K+   D     L ++S+ P ++       K L +  D  +   + G +  + N
Sbjct: 785  VFGTILWKNYIHD-----LVDVSLLPKIVNGISSKQKTLPQLPDTLV---LRGQIMMITN 836

Query: 1043 EWALLTISRHLKAQLFIL 1060
             + L+ + RH    L  L
Sbjct: 837  WFLLVLVKRHGSGYLVAL 854


>gi|291227737|ref|XP_002733839.1| PREDICTED: CG5728-like [Saccoglossus kowalevskii]
          Length = 822

 Score =  198 bits (503), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 170/580 (29%), Positives = 277/580 (47%), Gaps = 76/580 (13%)

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
            L V I P + G V+F  L   C            + P   +  GQ  K  V++I +    
Sbjct: 84   LRVDITPRMRGVVYFLHLSKNC---------HDLYSPEKHFKPGQAHKALVMKIDKQ--- 131

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
              H +L L  SLDG  S                     DL    +  G++ +       +
Sbjct: 132  --HKKLDL--SLDGTVSN--------------------DLKEGAVQNGWITHKYPTELGV 167

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS----DS 1318
             L+      V +++++D Y + P K F I + V   +L  +   K V ++L+ S    + 
Sbjct: 168  QLAGGNHGNVFITDINDKYSDDPIKMFRINQFVRCCILDCKD-EKHVTLSLRQSRINHNI 226

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
             +    EI NL +L VGDIV G +K     G+F+++ +  L G   +  LS  +V+    
Sbjct: 227  VSVPDKEIRNLCDLSVGDIVKGYVKDYSEVGVFVSL-SKELKGRIQLKNLSSYYVNKSAE 285

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSS 1438
             +  G+ V  K+L +D +  +I L +   +       L    E+    +++ VG   R  
Sbjct: 286  AFYCGKLVTAKVLSIDVDNSKIELSIHPEH-----TGLPDQLEKRYRGSLKCVGDSERRK 340

Query: 1439 LLENSSVAVQDM-DMESEDGG--------------SLVLAQIESRASVPPLEV---NLDD 1480
             +E      +   D E  D G               ++ +++ + + V  LE+   + DD
Sbjct: 341  YVEQRKKQKRKRQDSEESDSGIDGVLKDADSDSEVEIITSKMSNTSKVARLELAGFSWDD 400

Query: 1481 EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE-------IRAAEERLLEKD 1533
            +    +   S  +   D     D+ N    KKK K+ER+QE       +   E  L+++D
Sbjct: 401  KTFTANLTQSAKEMSGDSDSEDDDTNEEPLKKKTKKERQQEEKEEEKFLYRTELSLMDQD 460

Query: 1534 -APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1592
             AP   D+F+RLV SSP+SS +WI+YMAF L   D++KAR++AERAL+TI+ REE EKLN
Sbjct: 461  RAPENVDDFDRLVLSSPDSSMIWIRYMAFYLHTTDIDKARAVAERALKTISFREEQEKLN 520

Query: 1593 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1652
            +WVAY NLEN YG    E +VK+F+RALQ CDP KV  +++ +Y +T++ + A++L   M
Sbjct: 521  VWVAYLNLENLYGT--NETLVKLFERALQMCDPLKVFRSMINIYTKTQKLEEAEQLYSTM 578

Query: 1653 IKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPR 1691
            +++F     VW      L+K  + +  + ++QR+  SL +
Sbjct: 579  VRRFNFHKDVWASYGMFLMKSGKLDAARKIMQRSFKSLDK 618



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 1689 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1748
            +P   +++ I + A  EFK G  +RGR+MFE +LS YPKRTD+WSIY+D  I+ G +D I
Sbjct: 700  VPMGDYVEIIVKFAQFEFKFGEPERGRTMFENVLSNYPKRTDIWSIYIDMVIKQGHIDAI 759



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 104/238 (43%), Gaps = 31/238 (13%)

Query: 877  PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 936
            P+K F  GQ+  A VM +        L L        + + S   K+      G++    
Sbjct: 111  PEKHFKPGQAHKALVMKIDKQHKKLDLSL--------DGTVSNDLKE------GAVQNGW 156

Query: 937  ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 996
            IT   P EL ++   G HG + IT++ND  S   ++    F+I Q V   I+      D 
Sbjct: 157  ITHKYPTELGVQLAGGNHGNVFITDINDKYS---DDPIKMFRINQFVRCCIL------DC 207

Query: 997  KKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1054
            K      LS++ S +   +  +  K +   CD+S+G  V GYV         +++S+ LK
Sbjct: 208  KDEKHVTLSLRQSRINHNIVSVPDKEIRNLCDLSVGDIVKGYVKDYSEVGVFVSLSKELK 267

Query: 1055 A--QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
               QL  L S Y    + +    F+ GK VT  VLSI+ +   + L + P   G+ D+
Sbjct: 268  GRIQLKNLSSYY----VNKSAEAFYCGKLVTAKVLSIDVDNSKIELSIHPEHTGLPDQ 321


>gi|328697853|ref|XP_001951020.2| PREDICTED: protein RRP5 homolog [Acyrthosiphon pisum]
          Length = 337

 Score =  197 bits (500), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 106/269 (39%), Positives = 162/269 (60%), Gaps = 4/269 (1%)

Query: 1522 IRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1580
            +R  EE L + +  P+  D F+RLV S+PNSSF+WIKYMA  L   +VEKAR+ A+RAL 
Sbjct: 71   LRKVEEELTQIETNPQNADHFDRLVLSNPNSSFIWIKYMACHLQATEVEKARATAKRALS 130

Query: 1581 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1640
             I+ REE EKLNIW A  NLEN YG   +E+  +    AL+  D  ++++ +L ++  + 
Sbjct: 131  IIDTREEQEKLNIWTALLNLENLYGT--KESFKQTMDEALRSNDEYQIYIKILDIFAESN 188

Query: 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFIS 1699
            + K  +EL+ K+ +KF+ S   +L       K  + G  + ++Q+AL +LP   H+  IS
Sbjct: 189  KLKELEELITKINRKFRDSLDAYLHCATVYFKLNKPGKARFILQKALSNLPTKSHVTMIS 248

Query: 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759
            + A++E  +G  +  +++FE +L+ YP R D+WS+Y+D  I+   +DL R   ERA    
Sbjct: 249  RFALVENSDGSPEEAQTLFEHVLTSYPSRIDVWSLYVDMLIKSNRIDLARHALERATIQK 308

Query: 1760 LPPKKMKFLFKKYLEYEKSVGEEERIEYV 1788
            L PKKMK LF K++  E   G  E ++ V
Sbjct: 309  LAPKKMKSLFNKWMMLEGKYGTSESVDKV 337


>gi|347970192|ref|XP_313352.5| AGAP003595-PA [Anopheles gambiae str. PEST]
 gi|333468818|gb|EAA08922.6| AGAP003595-PA [Anopheles gambiae str. PEST]
          Length = 1470

 Score =  197 bits (500), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 179/307 (58%), Gaps = 5/307 (1%)

Query: 1497 DEAKTIDEKNNRHAKKKEK-EEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFV 1554
            D+A+T+ +K    +++ E  ++ E  +R  EE L +    P TPD+F+RLV + PN+S +
Sbjct: 1160 DQAETVPKKRATASERFEAMKQEEARLRKIEEELADPSLDPHTPDQFDRLVLAQPNNSML 1219

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            WI+YMAF +  A+++KAR++  +AL+ I+ RE  E+LN+W+A  NLE  Y     ++  +
Sbjct: 1220 WIRYMAFHMESAELDKARAVGRKALKAIHFRENAERLNVWIALLNLELRYETI--DSFKE 1277

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-Q 1673
            V Q A+QY D  KV+   L +    ++ +   ++L +++KKF+    +W        +  
Sbjct: 1278 VLQEAIQYNDAFKVYTRALDILIDCQKPEEVQKILEQLLKKFRKQNDMWYLVADAWYRIG 1337

Query: 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733
            Q   V+ ++ +AL SLP   HI  I + A L  +N   D    +FE IL+ YPKRTD+WS
Sbjct: 1338 QGSKVKPLLSQALKSLPTRDHIPLILKFAFLHNRNENRDEAHLLFEQILTSYPKRTDIWS 1397

Query: 1734 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
             Y+D  ++   V+  R + ERAI   LP K MK L+ K++ +E+  G+ E +  VK  A 
Sbjct: 1398 QYVDMLVKDNLVENARQILERAIMQRLPMKNMKTLYTKFVNFEEKHGDRESVRRVKHLAA 1457

Query: 1794 EYVESTL 1800
            EYV++ L
Sbjct: 1458 EYVQAQL 1464



 Score = 97.1 bits (240), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 150/615 (24%), Positives = 277/615 (45%), Gaps = 65/615 (10%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDN--EIEANEDNLLPTIFHV 55
           M L G V ++   +L+I LPG L G+ +    ++A    L++     + +   L  ++ V
Sbjct: 84  MLLLGCVKQIRATELLISLPGRLNGIVQITNISEAYSKRLEHMYNTRSTDCPTLGDLYTV 143

Query: 56  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
           G LV   VL+   D+     R+++L+L  S L+       + EG+VL A +   EDHGY 
Sbjct: 144 GDLVYMKVLRKVKDR-----RQVYLTLDPSKLHSDFKPAQLVEGLVLAATITVKEDHGYT 198

Query: 116 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRK---VVYLSSDPDTVSKC 172
           +  G+ +   FLP+ +L  N   +   G  L   + S+ ++     VV  +  PD     
Sbjct: 199 MDIGVHNVRAFLPQEHLNGNRDDE---GRNLFCSIHSVTQSGSGAVVVLKAFRPDEPR-- 253

Query: 173 VTKDLKGISIDLLVPGMMVSTRVQSILENGVM-LSFLTYFTGTVDIFHLQNTFPTTNWKN 231
              +++ ++++ +VPG  ++  V   +E G+  + F    T  V+   L  T  T+N   
Sbjct: 254 -VLNVEEVAVETIVPGCQLTFTVGEPVEYGLRGMLFEDSITAYVNRNML--TKVTSN-PE 309

Query: 232 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK-VGDIYDQSKVVRVDRGLG 290
            Y+  K + A +L+V P +  V ++L PY  +NRA       VG I ++++V   D G G
Sbjct: 310 KYSMFKTLPATLLYVMPVTNEVFVSLRPY-PNNRADCGQAHMVGSIVEKARVKSTDGG-G 367

Query: 291 LLLD--------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 342
           + L+        +P   +   A        +E V  +   ++ G+  RV ++ F  LE  
Sbjct: 368 VWLEFGNKCRALLPMGVIRKTAEAAAGGNVDESV--MLSNFQVGTTHRVGVVYFDPLE-- 423

Query: 343 ATGILKASA--FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
           +T I+  S    E ++    DV+ G   K +V+ + S GA+V   G V  +       ++
Sbjct: 424 STYIVSNSPDHAETMIQDSFDVEIGKTYKCRVLQLLSTGALVGV-GRVTGIV------KY 476

Query: 401 EIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAE----ATDRLI 454
           E      K KV   +  R +  G+ +  +  T++  L+  K  IL  +++      D+  
Sbjct: 477 EFFNRDSKLKVRDVVPMRAVCRGLDNDFLMFTNQPMLLNEKAPILMHWSQLDRNRKDQKF 536

Query: 455 THGWITKIEKHGCFVRFYNGVQGF--APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 512
             G +++I+K   +VRF+N + G   A  +  G D   E + +   G +    ++     
Sbjct: 537 V-GAVSQIQKSYVWVRFFNNLSGRINASVTVAGQDEA-EVAKLRQ-GSIRLFTVLDFDEG 593

Query: 513 SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 572
           +  I+L+      + + D  V+   L    V  V  +A    V+ +   +GTIP E  ++
Sbjct: 594 ANIIDLAL-----KQTSDQPVRTAQLARVTVSYV--HATGAEVLTENGEQGTIPAECFSE 646

Query: 573 HLEHATVMKSVIKPG 587
             EH ++   +++ G
Sbjct: 647 FGEHNSLYMRLLRGG 661


>gi|71650829|ref|XP_814104.1| rRNA biogenesis protein [Trypanosoma cruzi strain CL Brener]
 gi|70879049|gb|EAN92253.1| rRNA biogenesis protein, putative [Trypanosoma cruzi]
          Length = 669

 Score =  197 bits (500), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 191/330 (57%), Gaps = 19/330 (5%)

Query: 1480 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD 1539
            + + D ++ I  N G TD       KN    +K  K + E+ I A E R +E   P +PD
Sbjct: 310  ETESDENDSIDDNDGTTD-------KNGGREQKLRKRKIEEAIDAYE-RSMETTVPSSPD 361

Query: 1540 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1599
            EF RL+ ++PN+S++W+++MA  +++   E+AR +AE+AL TI +RE  E+LN+WVAY N
Sbjct: 362  EFRRLLLAAPNNSYLWVQWMAHHVALQQQEEARLVAEKALSTIGVRETQERLNVWVAYMN 421

Query: 1600 LENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658
            LEN +G    E++  VF+RALQ   D   V+  L  ++  T +      L   M+ KF++
Sbjct: 422  LENIHGT--VESLSAVFKRALQRAPDQLVVYERLADIFSATRKPNQLLALCRNMVSKFRN 479

Query: 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
              + W R  + L+ Q +++ ++ +V+    +L R  +   + + A+ E+K+G  + GR++
Sbjct: 480  EQRTWERLGKVLIDQKKRDQLRRMVKDMGGALRRDAYSLTVVRLAVHEYKSGSVENGRAL 539

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERAISLSLPPKKMKFLFK 1770
            FEG++   PK++D+WS YLDQE+ L         V L+R L ERA++ +   K M+    
Sbjct: 540  FEGLVVRMPKKSDVWSAYLDQEMALLVRRDESAAVPLVRALLERAVATNFSAKVMQQFLT 599

Query: 1771 KYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
            +++ +E++ G    +E VK +A  YVE+ +
Sbjct: 600  RFMSFERAYGSPADVEKVKTRARSYVEAKI 629


>gi|429328604|gb|AFZ80364.1| hypothetical protein BEWA_032170 [Babesia equi]
          Length = 366

 Score =  196 bits (499), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 177/302 (58%), Gaps = 21/302 (6%)

Query: 1512 KKEKEEREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADV 1568
            KK + + E+++R  E+R ++ +    P+   +FERL+ ++ NSS VWI YMAF L++ D 
Sbjct: 62   KKSEYKNEEKVRELEKRNVDNEWMSNPNSVLDFERLIMTNGNSSAVWIGYMAFHLNVGDT 121

Query: 1569 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1628
            E AR    R L  I+ RE  EK N+W+AY N+E  YG    E ++ VF  A+QY D K +
Sbjct: 122  EMARKTVRRGLARIDFREMTEKQNLWLAYLNMECMYG----EDIMSVFNEAVQYNDAKTM 177

Query: 1629 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---QQEGVQAVVQRA 1685
            +   +G++   ++ + A E+  K IKKF  S K+WL  +  L +     +EG QA  +  
Sbjct: 178  YKKAIGIFISNKKLEEAKEVCLKGIKKFGKSKKIWLLYITLLYQHIGDAEEGRQA-HKMC 236

Query: 1686 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1745
            +  +P+HK I   S TA+LE+K G  + G+  FE IL + PKRTD+W  Y+   I+L   
Sbjct: 237  INRIPKHKRIFVSSATALLEYKFGSPEIGKRYFEDILLDNPKRTDVWVQYICAHIKLHIE 296

Query: 1746 D----------LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
            D           IR LF+R I+L L PKKMK +F K+LE+E + G E+  E V++KA+ Y
Sbjct: 297  DDSKQKSERLKTIRNLFDRIITLDLKPKKMKIIFSKWLEFECNHGNEKSKEMVQRKALAY 356

Query: 1796 VE 1797
            VE
Sbjct: 357  VE 358


>gi|342179842|emb|CCC89316.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 672

 Score =  196 bits (499), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 194/345 (56%), Gaps = 16/345 (4%)

Query: 1469 ASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID----EKNNRHAKKKEKEEREQEIRA 1524
            ++ PP    L    P  D+   Q +   +E  + D    ++N   + +K +  + +E   
Sbjct: 286  SAAPPFAAGLSGNFPWRDHK-RQRRAEAEEDFSDDTGEDQENAAMSSRKMRRRKLEEAID 344

Query: 1525 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            A ER +E   P +P+EF+RL+ +SPN+S++W+++M   +S+   E AR +AE+AL TI +
Sbjct: 345  AYERSMETAVPSSPEEFQRLLLASPNNSYLWVQWMTHHVSLQQYEDARLVAEKALSTIGV 404

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNK 1643
            RE  E+LN+WVAY NLEN +G    E++  VF+RALQ+  D   V+  L  ++  T ++ 
Sbjct: 405  RESQERLNVWVAYMNLENLHGTA--ESLASVFKRALQHALDELVVYERLADIFGATHKSA 462

Query: 1644 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1702
                L   M+ K++   + W R    L+ Q +++ ++ V++    +L R ++   +    
Sbjct: 463  QLLSLCRTMVSKYRKVPRTWERLGTVLIDQNRRDLLKRVLKDMNGALRRDEYAVTVVHLG 522

Query: 1703 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERA 1755
            + E++NG  +  R++FEG+L   PK++D+WS+YLDQE+ L         V  +R LFERA
Sbjct: 523  VHEYRNGSVENARALFEGLLLRMPKKSDVWSVYLDQELGLLARRAESSSVAFVRSLFERA 582

Query: 1756 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
            ++ S   K M+ +  +++ +E+  G    +E VK +A  YVE+ +
Sbjct: 583  VATSFSAKIMQQILTRFMSFERVHGTPADVERVKARARSYVEAKI 627


>gi|194770786|ref|XP_001967469.1| GF20724 [Drosophila ananassae]
 gi|190618479|gb|EDV34003.1| GF20724 [Drosophila ananassae]
          Length = 1424

 Score =  196 bits (498), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 184/328 (56%), Gaps = 18/328 (5%)

Query: 1475 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEE--REQEIRAAEERLLEK 1532
            + N  DE  D D   +Q            +K    AK+K K E   EQ +R  EER  + 
Sbjct: 1105 KTNSSDEDEDQDAAEAQPA----------KKKRLSAKEKAKAEVREEQRLREIEERNADP 1154

Query: 1533 DAP-RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1591
             A   T D++ERLV + PN+S  W+KY+AF+LS  ++EKAR +A RA+ TI+ RE  E  
Sbjct: 1155 KARLETIDQYERLVIAQPNNSISWLKYIAFLLSNTEIEKARDLARRAISTISFRETQELR 1214

Query: 1592 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1651
            N+W A  N+E  YG+  +E    V + AL+  DP ++++ ++ + ++ +Q +     L  
Sbjct: 1215 NVWSALLNMELAYGSNFDE----VLKEALKCNDPLEIYICVVDILKKNKQRERLSSTLTT 1270

Query: 1652 MIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710
            ++ KFK   ++W    +      + + V +++QRAL  LP  +HI  I   A L  +N  
Sbjct: 1271 ILNKFKAQARIWPVVAEAYFWLGKSDQVHSLLQRALKVLPNQEHINCIVSFAKLYARNDA 1330

Query: 1711 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1770
             D  +++ + +++ YPKR D+WS+Y+D  I+ G VD  R + ERA+   L P KM+ ++K
Sbjct: 1331 NDMAQTLLDDVVTSYPKRIDIWSVYVDMLIKAGLVDSARNVLERAVLQKLKPNKMQVIYK 1390

Query: 1771 KYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            KYL+ E + G E  +  VKQ+A ++V++
Sbjct: 1391 KYLQLELNHGTEASVAKVKQQAEQWVKN 1418



 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 189/857 (22%), Positives = 344/857 (40%), Gaps = 84/857 (9%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEIEANEDNL--LPTIFHV 55
           M + GVV  V    L + LPG +      AD   A   +    +  +  +   L  +F  
Sbjct: 75  MLVMGVVKGVTPTALQVALPGRMFARTLVADISEAYTRVAKAAMSGDTTDYHDLTELFQP 134

Query: 56  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
           G++V    ++ D  K    +  + LSL+ S ++  L  + +++G + +  V+ I++HGY+
Sbjct: 135 GRIVYGRAIKTD--KLNCNRTTLLLSLKPSEVHSSLHHKNIKKGFIFSGAVEEIQEHGYV 192

Query: 116 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 175
           +  G+     F+      E S   +  G L    V+ I         +      S+   K
Sbjct: 193 IETGVQGLQAFVA----CEESKQSLHVGQLAFVKVQQIQHDTHKSTCTCVLVDQSQLKVK 248

Query: 176 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDYN 234
                ++D ++PG +V  +V   L++G+  S +   F    +  HL +   T    + Y 
Sbjct: 249 SQNESNLDYILPGSIVRFKVSKHLKDGLKGSIMNESFAAYTNEHHLASPLDTL---DAYE 305

Query: 235 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH---------------VKVGDIYDQ 279
            ++   AR+L+V P ++ V LTLN   L  +  P                 +KVG + ++
Sbjct: 306 LNQDYYARVLYVMPLTKLVYLTLN---LDIKTDPETGIQQDDADGDEELEPLKVGSVVEK 362

Query: 280 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFR 337
           +KV+R+  G G++L +        ++ +I    +    K E   KY   +  +VRILG+ 
Sbjct: 363 AKVLRLGSG-GVVLLLNKKLKGIISFKSIRSNYKGNYDKDEVLSKYGRKTKHKVRILGYD 421

Query: 338 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPH 396
            +E +       +     VF+ +D+  G +V  K++   D         G V A     +
Sbjct: 422 VIESMYYCSDAPNVVNEKVFSLTDISAGDIVTAKIVKKNDKINGWTLKIGKVNATLEQLY 481

Query: 397 MSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLI 454
           ++      P  +++ G  L  RVL V S R    ++++   +   L +L+  + A    +
Sbjct: 482 LA------PNVRYEAGQPLRCRVLEVNSDRKICYLSNRSEYLAKGLKLLTDLSSAQVGGV 535

Query: 455 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 514
             G + + + H   V+F +G++G   R  +      +  S +  GQ  K RI+S      
Sbjct: 536 YTGTVVRCDDHLVLVKFGSGIEGVLYRQNM------KGQSSFFEGQTTKFRILSR--NKD 587

Query: 515 RINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK--------GTIP 566
           +I L+      ++ E   V++ + +   +++    A                    G IP
Sbjct: 588 KITLTLPEDKFQLGEICPVEITNTLDAGLEIKITYAAEEDKEDDEEDGDPKVEEFVGLIP 647

Query: 567 TEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 626
              L+DHLE       V   G   +   ++ N  S  L    Y     + Q+  D   + 
Sbjct: 648 LRLLSDHLELLQAQVRVHPVGSLTEAACIVQNIFS--LRDVAY----FSGQITKDWKSVQ 701

Query: 627 PNSVVHGYVCNIIETGCFVRFLGRLTGF-APRSKAVDGQRADLSKTYYV----GQSVRSN 681
              ++  YV N  E    V  +  +  +  P    V   R +  K   V     Q +   
Sbjct: 702 VGDIIRSYVKNATEQ--VVDLMVSVRNYNKPVKVHVKMLRLNAVKNTPVELVPEQLLMVK 759

Query: 682 ILDVNSETGRITLSLKQSCCSS---TDASFMQEHFLLEEKIAMLQSSKHNGSE--LKWVE 736
           +L    ET  +T+S K +   S   TD +   E +L  +++A +++     S    K+  
Sbjct: 760 VLSKEPETKTLTVSAKLTDVWSGDLTDTAKSVERYL--DEVAQIRTGLKEISAPIAKYSV 817

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-ESGSVIQAAILDVAK 795
           G  I  V +G   ES+D+  V + E  S     +       AT   +GS   A +L V  
Sbjct: 818 GEKINVVFQGINSESHDW--VYTVEGSSKTSALLLSSLAGTATAPPTGSKHPAVVLWVDY 875

Query: 796 AERLVDLSLKTVFIDRF 812
           +  ++ +S K V IDR 
Sbjct: 876 SSDVLLISNKKVDIDRI 892


>gi|402584047|gb|EJW77989.1| hypothetical protein WUBG_11104, partial [Wuchereria bancrofti]
          Length = 345

 Score =  196 bits (498), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 168/269 (62%), Gaps = 6/269 (2%)

Query: 1524 AAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1582
            A E ++LE D  P   ++F+RLV  SPNSS +WI+Y+ F L   D++KAR++AERAL  I
Sbjct: 77   ARERKILEADWIPDNTNDFDRLVTGSPNSSILWIRYITFFLEQNDIDKARAVAERALSVI 136

Query: 1583 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1642
            N REE+E  N+W AY NLE  +G    E++  VF  A++  DP K++  ++ +Y++ E+ 
Sbjct: 137  NFREEDEIFNVWTAYLNLEGNFGT--NESLKAVFANAVRNTDPLKMYKQMVKIYQKLEKI 194

Query: 1643 KLADELLYKMIKKFKH-SCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQ 1700
            +  D+LL +M+K+F+H    VW    Q LL+ ++ +  + ++++A+  L R  H+  +S+
Sbjct: 195  EEIDDLLEEMLKRFRHDDLDVWFIYGQHLLETKRPDKARNLMKKAINCLQRKHHVTILSR 254

Query: 1701 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1760
             A LEFK G  ++ +++FE IL+ YPK+TD+W++Y+D  I+   +D  R L ER  +L L
Sbjct: 255  FAQLEFKFGDMEQSKTIFESILNSYPKKTDVWTVYIDLLIKAEKIDDARQLLERVTALKL 314

Query: 1761 PPKKMKFLFKKYLEYEKS-VGEEERIEYV 1788
               K++  +K  L + KS V    R  YV
Sbjct: 315  STHKIRLFYKNGLIWNKSMVMRSNRTMYV 343


>gi|343470403|emb|CCD16896.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 672

 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 194/345 (56%), Gaps = 16/345 (4%)

Query: 1469 ASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID----EKNNRHAKKKEKEEREQEIRA 1524
            ++ PP    L    P  D+   Q +   +E  + D    ++N   + +K +  + +E   
Sbjct: 286  SAAPPFAAGLSGNFPWRDHK-RQRRAEAEEDFSDDNGEDQENAAMSSRKMRRRKLEEAID 344

Query: 1525 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            A ER +E   P +P+EF+RL+ +SPN+S++W+++M   +S+   E AR +AE+AL TI +
Sbjct: 345  AYERSMETAVPSSPEEFQRLLLASPNNSYLWVQWMTHHVSLQQYEDARLVAEKALSTIGV 404

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNK 1643
            RE  E+LN+WVAY NLEN +G    E++  VF+RALQ+  D   V+  L  ++  T ++ 
Sbjct: 405  RESQERLNVWVAYMNLENLHGTA--ESLASVFKRALQHALDELVVYERLADIFGATHKSA 462

Query: 1644 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1702
                L   M+ K++   + W R    L+ Q ++E ++ V++    +L R ++   +    
Sbjct: 463  QLLSLCRTMVSKYRKVPRTWERLGTVLIDQNRRELLKRVLKDMNGALRRDEYAVTVVHLG 522

Query: 1703 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERA 1755
            + E++NG  +  R++FEG+L   PK++D+WS+YLDQE+ L         V  +R LFERA
Sbjct: 523  VHEYRNGSVENARALFEGLLLRMPKKSDVWSVYLDQELGLLARRAESSSVAFVRSLFERA 582

Query: 1756 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
            ++ +   K M+ +  +++ +E+  G    +E VK +A  YVE+ +
Sbjct: 583  VATNFSAKIMQQILTRFMSFERVHGTPADVERVKARARSYVEAKI 627


>gi|308499240|ref|XP_003111806.1| CRE-LET-716 protein [Caenorhabditis remanei]
 gi|308239715|gb|EFO83667.1| CRE-LET-716 protein [Caenorhabditis remanei]
          Length = 1758

 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/266 (37%), Positives = 166/266 (62%), Gaps = 5/266 (1%)

Query: 1536 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1595
            ++ +E  RLVRS PNS+  WI+YM+  +  +D+  AR  AE AL+ IN  E  E L +W 
Sbjct: 1485 KSEEEHSRLVRSDPNSAINWIEYMSLFVEKSDLTAARKTAEEALEAINPTESEELLKMWT 1544

Query: 1596 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1655
            A+ N+E  YG+     V KVFQRA +  +   +H  L  ++++ E+N  A ++L +M+KK
Sbjct: 1545 AFLNMEVAYGD--STTVEKVFQRACKNANAYTIHKTLAKIHQKFEKNAEATQILEQMVKK 1602

Query: 1656 FK-HSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVAD 1712
            F+ +  +VW    + L+ Q+ Q+  + ++ RAL S P   +HI+ IS+ A LEFK G A+
Sbjct: 1603 FRANKLEVWTLLAEHLMTQKDQKAARDLLPRALKSAPNAQQHIQLISKFAQLEFKFGDAE 1662

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
            RGR++ EG+++ +PK+TDLW +Y D  ++   ++  R + ERA +L +   KM+ L+KK+
Sbjct: 1663 RGRTLLEGLVTAHPKKTDLWLVYADAALKHLGIEHARKILERACNLEMSVHKMRPLYKKW 1722

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVES 1798
            LE E   G+   ++ VK KA +++++
Sbjct: 1723 LEMESKHGDAAAVQLVKSKAEKFLQA 1748



 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 184/434 (42%), Gaps = 30/434 (6%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 64
           GVVAEV E  +V+   G       A++        E+   E   +   F VGQ++   V+
Sbjct: 77  GVVAEVFEDGVVLHTAGTHTVKIHASEVSKKF--TELFNAEKIEMKDAFQVGQMIPFRVI 134

Query: 65  QLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 123
                KK IG K K   S   S L K LS   +  G+V+   V SIE+ G IL  GL   
Sbjct: 135 T----KKTIGDKGKAKASCNPSKLNKHLSPNMLVAGLVINTSVISIEEKGAILDVGLDQM 190

Query: 124 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS--DPDTVSKCVTKDLKGIS 181
           TGF+ ++     SG+  K GL L  VVR +  T +V+ ++S  + D ++    + L+   
Sbjct: 191 TGFIEKSQFPA-SGL--KEGLPL--VVRILSTTSRVIKVTSFVEQDNLNMATCEKLQ--- 242

Query: 182 IDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
           ++ L+PG ++        +  GV++       G +     +   P    +N     K + 
Sbjct: 243 LNHLMPGTILECEPTGDAVTAGVIVHIGNGLKGILP----RRNLPPRLRENPEKLGKAIR 298

Query: 241 ARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 295
           A ++F    S+ + L  +P +     +  R     + +GD    + +  +     +   +
Sbjct: 299 AVVMFCQQNSKILVLNAHPDIVAVSRIEKRTSFEGISIGDKVKCTVIDAIPTKSIVYFTL 358

Query: 296 PSTPVSTPAYVTISDVAE-EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 354
           P T         +S     E+   +  +Y+ G+    R++GFR+ +   T   +      
Sbjct: 359 PPTDGKKSLVTAVSSRGLLEKPDAVASEYEVGTEKLCRVIGFRYADRTITVSTRKDILNQ 418

Query: 355 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVG 412
            + T+ D K G ++ G+V  V   G        VKA  PL  +S+  +  P  K  FKVG
Sbjct: 419 KITTYQDAKCGDILDGRVHHVTKSGVYFMVCNFVKAFAPLSLLSDKPLTVPKIKSMFKVG 478

Query: 413 AELVFRVLGVKSKR 426
            E+  RV  +  +R
Sbjct: 479 TEMKCRVWQICEQR 492



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 149/366 (40%), Gaps = 73/366 (19%)

Query: 178 KGISIDLLVPGMMVSTRVQSILENGVMLSF-LTYFTGTVDIFHLQNTFPTTNWKNDYNQH 236
           K +S ++LV G++++T V SI E G +L   L   TG ++    ++ FP +  K      
Sbjct: 156 KHLSPNMLVAGLVINTSVISIEEKGAILDVGLDQMTGFIE----KSQFPASGLKEGL--- 208

Query: 237 KKVNARILFVDPTSRAVGLT-------LN----PYLLHNRAPPSHV----KVGDIYDQSK 281
             +  RIL    TSR + +T       LN      L  N   P  +      GD      
Sbjct: 209 -PLVVRIL--STTSRVIKVTSFVEQDNLNMATCEKLQLNHLMPGTILECEPTGDAVTAGV 265

Query: 282 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR---- 337
           +V +  GL  +L   + P                 R  E   K G  +R  ++  +    
Sbjct: 266 IVHIGNGLKGILPRRNLPP----------------RLRENPEKLGKAIRAVVMFCQQNSK 309

Query: 338 ------HLEGLATG-ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF---PGG 387
                 H + +A   I K ++FEG+         G  VK  VI      +IV F   P  
Sbjct: 310 ILVLNAHPDIVAVSRIEKRTSFEGISI-------GDKVKCTVIDAIPTKSIVYFTLPPTD 362

Query: 388 VKALCPLPHMSEFEIVKP---GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAI 442
            K        S   + KP     +++VG E + RV+G +   + ITV+ +K ++  K+  
Sbjct: 363 GKKSLVTAVSSRGLLEKPDAVASEYEVGTEKLCRVIGFRYADRTITVSTRKDILNQKI-- 420

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS--SMYHVGQ 500
            ++Y +A    I  G +  + K G +    N V+ FAP S L   P   P   SM+ VG 
Sbjct: 421 -TTYQDAKCGDILDGRVHHVTKSGVYFMVCNFVKAFAPLSLLSDKPLTVPKIKSMFKVGT 479

Query: 501 VVKCRI 506
            +KCR+
Sbjct: 480 EMKCRV 485



 Score = 40.4 bits (93), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 164/388 (42%), Gaps = 53/388 (13%)

Query: 800  VDLSLKTVFIDRFREANSNRQAQKKKRKREAS----KDLGVHQTV----NAIVEIVKENY 851
            VD   +T  I +    NS ++ + +    E      K+ GV++        + E  K N 
Sbjct: 962  VDDVARTTLIKKEFIGNSKKEKKTEDGSEEGKVRSIKNFGVYEGTVIGHAKLEENRKRNS 1021

Query: 852  LVLSLPEYNHSIGYASVSDY-----NTQKFPQKQFLN---GQSVIATVMALPSSSTAGRL 903
            L + +     ++G   VS++     N++  P ++FL     + VI  ++    S+   ++
Sbjct: 1022 LFVDIRLPGDNVGRLHVSEFPPNLLNSEN-PLEEFLTRNVNKKVIVRIIGFIKSAKGPKI 1080

Query: 904  LLLLKAISETETSSSKRA--KKKSSYDVGSLVQ----AEITEIKPLELRLK-FGIGFHGR 956
              L    S+ +    + A    KS+Y VG +++    A +TE + L++ +    IG   R
Sbjct: 1081 AELTMIPSKIQAGKVRAATLSYKSNYSVGDMIKCFGTATLTEKQQLKVEVNPVWIGSISR 1140

Query: 957  IHITEVNDDKSNVVENLFSNF--KIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1014
             ++TE  D K    +    +F  K G+   A++IA       +KS    L+     L  S
Sbjct: 1141 ENVTE--DLKITAADGGIVDFSLKKGEMRQAKVIAVD-----RKSMSMTLT-----LDTS 1188

Query: 1015 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF--ILDSAYEPSELQEF 1072
            E+ S+         IG  VTG V+ V   +  L +S   +A L    +   YE  E +  
Sbjct: 1189 EVDSEF-------KIGSTVTGRVFFVSKTYIRLKLSTGQQAVLTPTAITDKYESVE-EVV 1240

Query: 1073 QRRFHIGKAVTGHVLSINKEKKLLRLVLRP-FQDGISDKTVDISNDNMQTFIHEGDIVGG 1131
            +++  +G+ V      I  + K   +VL+  +    +++   +  DN    I EG    G
Sbjct: 1241 EKQMAVGQLVDVVCAKIQDKPKRHYVVLKSRYNSKTTNEKRKLILDN--KLIKEGSQFDG 1298

Query: 1132 RISKILSGVGGLVVQIGPHLYGRVHFTE 1159
             +    +  G L ++IGP + GR+   E
Sbjct: 1299 IVEN--ASKGSLFIEIGPGISGRIPVNE 1324


>gi|17552198|ref|NP_498398.1| Protein LET-716 [Caenorhabditis elegans]
 gi|351047543|emb|CCD63223.1| Protein LET-716 [Caenorhabditis elegans]
          Length = 1743

 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/266 (37%), Positives = 166/266 (62%), Gaps = 5/266 (1%)

Query: 1536 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1595
            ++ ++  RLVRS PNS+  WI+YM+  +  +D+  AR  AE AL  IN  E +E L IW 
Sbjct: 1470 KSEEDHSRLVRSDPNSAINWIEYMSHFIEKSDLAAARKTAEEALGAINPTESDELLKIWT 1529

Query: 1596 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1655
            AY N+E  YG+     V KVF+RA +  +   VH  L  +Y++ E+N  A ++L +M+KK
Sbjct: 1530 AYLNMEVAYGDAA--TVQKVFERACKNANAYTVHKTLSKIYQKFEKNAEATQILEQMVKK 1587

Query: 1656 FK-HSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVAD 1712
            F+ +  +VW    + L+ Q  Q+  + ++ RAL S P+  +H++ IS+ A LEFK+G A+
Sbjct: 1588 FRANQLEVWTLLAEHLMTQNDQKAARELLPRALKSAPKAQQHVQLISKFAQLEFKHGDAE 1647

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
            RGR++ EG+++ +PK+TDLW +Y +  ++   ++  R + ERA +L     KM+ L+KK+
Sbjct: 1648 RGRTLLEGLVTAHPKKTDLWLVYAEAVLKHLGIEHARKVLERACNLGFSIHKMRPLYKKW 1707

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVES 1798
            LE E   G+   +E VK KA +++++
Sbjct: 1708 LEMESKHGDAAAVELVKAKAEKFLQA 1733



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 164/766 (21%), Positives = 304/766 (39%), Gaps = 83/766 (10%)

Query: 44  NEDNL-LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 102
           NE+ + +   F +GQ+V   V+     K+   K K+  +   + L K LS   +  G+VL
Sbjct: 113 NEEKIEIKNAFQLGQMVPFRVIS---KKQGNDKGKVKGTCNPARLNKHLSPNMLAAGLVL 169

Query: 103 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 162
              V SIE+ G IL  GL   TGF+ ++         +K G+ L  +VR +  T +VV +
Sbjct: 170 HTAVVSIEEKGAILDVGLDQITGFIEKSQF---PAAGLKEGMPL--IVRVLSSTSRVVKV 224

Query: 163 SS----DPDTVSKCVTKDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVDI 217
           +S    D   ++ C     + + ++ L+PG ++        +  GV+++      G +  
Sbjct: 225 TSFVEQDNLNMTSC-----EKLQLNHLMPGTILECEPTGDAVTAGVIVNIGNGLKGILP- 278

Query: 218 FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVK 272
              +   P    +N     K + A ++F    S+ + L  +P +     +  R     + 
Sbjct: 279 ---RRNLPPRLRENPEKLGKAIRAIVMFCQQNSKILVLNAHPDIVAASRIEKRTSFEGIS 335

Query: 273 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRV 331
           +GD    + +  +     +   +P+          +S     E+  ++  +Y+ G+    
Sbjct: 336 IGDKVKCTVIDVLPTKSMVYFALPAIDGKKSLVTAVSSRGLLEKPDQVSTEYEVGTEKLC 395

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
           R+ GFR+ +   T   +       +  + D K G V+  +V  V   G        VKA 
Sbjct: 396 RVTGFRYADRSITISTRKDILNQKITKYQDAKCGDVLDARVHHVAKSGVYFMVCNFVKAF 455

Query: 392 CPLPHMSEFEIVKPGKK----FKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSS 445
            PL  +S+  +  P +K    +KVG E+  RV  +  + K + VT +++++  K   ++S
Sbjct: 456 APLSMLSDKPL--PAQKMKNIYKVGTEVKCRVWQICDERKNLIVTCRESILGLKSPSVNS 513

Query: 446 YAEATDRLITHGWITKIEKHGC-FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 504
             E    +     I K+   G   +  +N + G   +      PG   ++ + V  V K 
Sbjct: 514 VQELEIGVTVPCVIRKVFPTGVLLLGTFNNICGVLRKESAVHLPGTPKNNDFVVANVEKI 573

Query: 505 RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY---VIAKGYS 561
                +   R +N S  +   + SE  LV+  +   G + +       +Y   + AK   
Sbjct: 574 EDNRVVFVLRDVNPSAAVANGQNSEKKLVQRPNPADGGISIGK-----IYKGSLCAKAGE 628

Query: 562 KGTIPTEHLADHLEHATVMKSVIK-----PGYEFDQLLVLDNES-SNLLLSAKYSLINSA 615
           K  +          +A+V   ++      P     +LL+ + E  S ++   K + IN A
Sbjct: 629 KANVTFTGEGKKEVYASVDDHLLSDLLDAPIGLTKRLLIENKEDISTIVPMGKMAAINRA 688

Query: 616 ------------QQLPSDASHIHPNSVVHGYVCNII-ETGCFVRFLGRLTGFAPRSKAVD 662
                        +LP     +    V+ G V  +I   G FV  +G   G     K ++
Sbjct: 689 CVKRSVASFVKGMKLPKKIDELKVGKVIVGIVGQVITNVGVFVELVG---GSGLVGKVLE 745

Query: 663 GQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 721
            + A + S+   VGQ +   I  +++        L   C        M + + L     +
Sbjct: 746 RKNAKNTSELLEVGQVIVGTIESIDTTKKSF---LIDPCTDLETGELMLKKYAL----PL 798

Query: 722 LQSSKHNGSELKWVEGF----IIGSVIEGKVHESNDFGVVVSFEEH 763
           L+S      E+KW+       I GS + GKV +  D   +V FE +
Sbjct: 799 LESIVE---EVKWLAEQSNYPIPGSKVNGKVTKELDDLTLVEFEHN 841


>gi|407843923|gb|EKG01697.1| rRNA biogenesis protein, putative [Trypanosoma cruzi]
          Length = 669

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 188/326 (57%), Gaps = 19/326 (5%)

Query: 1484 DMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFER 1543
            D ++ I  N G TD       KN    +K  K + E+ I A E R +E   P +PDEF R
Sbjct: 314  DENDSIDDNDGATD-------KNGGREQKLRKRKIEEAIDAYE-RSMETAVPSSPDEFRR 365

Query: 1544 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1603
            L+ ++PN+S++W+++MA  +++   E+AR +AE+AL TI +RE  E+LN+WVAY NLEN 
Sbjct: 366  LLMAAPNNSYLWVQWMAHHVALQQQEEARLVAEKALSTIGVRETQERLNVWVAYMNLENI 425

Query: 1604 YGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV 1662
            +G    E++  VF+RALQ   D   V+  L  ++  T +      L   M+ KF++  + 
Sbjct: 426  HGT--VESLSAVFKRALQRAPDQLVVYERLADIFSATRKPNQLLALCRNMVSKFRNEQRT 483

Query: 1663 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1721
            W R  + L+ Q +++ ++ +V+    +L R  +   + + A+ E+K+G  + GR++FEG+
Sbjct: 484  WERLGKVLIDQKKRDQLRRMVKDMGGALRRDAYSLTVVRLAVHEYKSGSVENGRALFEGL 543

Query: 1722 LSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1774
            +   PK++D+WS YLDQE+ L         V  +R L ERA++ +   K M+    +++ 
Sbjct: 544  VVRMPKKSDVWSAYLDQEMALLVRRDESAAVPFVRALLERAVATNFSAKVMQQFLTRFMS 603

Query: 1775 YEKSVGEEERIEYVKQKAMEYVESTL 1800
            +E++ G    +E VK +A  YVE+ +
Sbjct: 604  FERAYGSPADVEKVKTRARSYVEAKI 629


>gi|145544753|ref|XP_001458061.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425880|emb|CAK90664.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1495

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 155/251 (61%), Gaps = 10/251 (3%)

Query: 1540 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1599
            E+E+ + ++PNSS +WI+++A+      +E AR++ ERAL+ IN   E E+LN+W AY N
Sbjct: 1180 EYEKKILTNPNSSVIWIEFVAYAAENEGIESARNVIERALRVINFSNELERLNLWTAYLN 1239

Query: 1600 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1659
            LE  +G+  E+ ++ +F+R  Q CD KK+H+ L+ +Y + E+  L  EL    ++K+K S
Sbjct: 1240 LEFNFGS--EDNLINIFKRGCQNCDGKKLHIKLINIYRKAEKVDLTVELSRSFVQKYKQS 1297

Query: 1660 CKVWLRRVQRLLKQQ--------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1711
            CK W+  +Q L++ Q        Q   +  + RA+  L + K +K +S    L+F+N   
Sbjct: 1298 CKSWMEFLQSLMEWQKVHDDENPQYSFKDTLNRAMQCLKKSKQVKLLSFYGRLQFQNNQI 1357

Query: 1712 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771
            + G++ +E IL +   RTD+WS YLD  I+    D++R +F++AI  +  P+K+KFLFKK
Sbjct: 1358 EEGKTTYETILDKNSTRTDIWSQYLDLVIKYCQPDVVRSIFQKAIHNNKKPRKIKFLFKK 1417

Query: 1772 YLEYEKSVGEE 1782
             LEYEK +  +
Sbjct: 1418 QLEYEKLIWRQ 1428



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 122/546 (22%), Positives = 211/546 (38%), Gaps = 95/546 (17%)

Query: 53  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 112
           + VG+ V   V++      E    K+ LSL  +++   LS+  +  GM +    ++  + 
Sbjct: 153 YKVGEYVITKVIE------EQKSNKVQLSLHPNVINDQLSVNQLVVGMQIPGIAQTWNEF 206

Query: 113 GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 172
           G  ++FG   F+GF+    L        K G +    ++ +D+  K+     +   V   
Sbjct: 207 GTTINFGSQQFSGFINEKKL--------KCGRVYLFNIKEVDQKEKIAICDFEQRDVQ-- 256

Query: 173 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 232
             ++ K IS  LL PG +        +  G ++  L  F     IF             D
Sbjct: 257 -LQNKKQISKHLLTPGNIWKCNTAKSITGGQIVK-LNKFGVLGYIFQ------------D 302

Query: 233 YN--QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLG 290
           Y   Q K +  RI+  D  SR + L+     + N       +VG  Y Q  V+      G
Sbjct: 303 YQVEQEKNILCRIIGFDEPSRQIYLSSKQEHIDNTTYIPPYEVGQQY-QGVVINQQLYSG 361

Query: 291 LLL-------DIPST---------------PVSTPAYVTISDVAEEEVRKLEKKYKEGSC 328
             L       D   T               P+       I   A++E+      + + +C
Sbjct: 362 AYLVNAILNDDQAQTKKSKKAVKAKQPNLGPICMLNKTQIP--ADQEIVD----HIQRTC 415

Query: 329 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV----DSFGAIVQF 384
           +   I  F H+  ++  +             SD+  G +VKG V  V    DS+  ++  
Sbjct: 416 IIKEINYFDHVGFVSFEVNSKPKL-------SDLNVGAIVKGVVKQVLLKEDSYNVLLNI 468

Query: 385 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
                A+ P   MS++ +  P  KF+VG++L  R+L +  +   I VT K TL+ + + +
Sbjct: 469 NDNFHAILPSLQMSDYPLANP-PKFRVGSKLRVRILQIDEQHNNIIVTMKPTLL-TDIKV 526

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
             +  +       +G+  K  ++G  V+F+  + GF   S L LD G  P  +   GQ++
Sbjct: 527 FKTLDDVNVGDTLYGFTIKKLENGILVKFFQNIVGFL--SNLSLD-GQNPDDIKD-GQII 582

Query: 503 KCRIMSSIPASRRINLSFMM---KPTRVSEDDL------------VKLGSLVSGVVDVVT 547
           K  +     +  ++ LS      K  +V+E               + LG  V  VV  + 
Sbjct: 583 KVYVKYVNQSENKLLLSLKKIDPKQKQVNEGQTQNVVLTKHIKTKLNLGEKVQCVVSAIK 642

Query: 548 PNAVVV 553
            N V V
Sbjct: 643 NNVVYV 648


>gi|322704015|gb|EFY95615.1| rRNA biogenesis protein RRP5, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1795

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/286 (38%), Positives = 171/286 (59%), Gaps = 11/286 (3%)

Query: 1518 REQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1577
            R+ EI       L+   P+T  ++ERL+   P+SS +WI+YM F + ++++ KAR +AER
Sbjct: 1491 RKGEIEVDRTAELDAHGPQTSSDYERLLLGQPDSSKLWIQYMEFQMKVSELAKAREVAER 1550

Query: 1578 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1637
            A+++INIR+E EKL +WVAY  LE  YG   ++ V  VF+RA QY D +KVH  L  +Y 
Sbjct: 1551 AIKSINIRKEEEKLKVWVAYLKLEVTYGT--KQTVEDVFKRACQYNDEQKVHEELASIYI 1608

Query: 1638 RTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKH 1694
            ++ + K AD+L   M+KKF   +  VW      L   + Q +  +A++ RA   LP H+ 
Sbjct: 1609 QSGKLKDADDLYESMLKKFGAKAPSVWTNYATFLSVTRNQPDRARALLPRATQRLPAHQS 1668

Query: 1695 IKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE--IRLGDVDLIRG 1750
               + Q A LEF+  NG  +RGR+MFEG+L+ +PKR DLWS  LD E  +  GD   +R 
Sbjct: 1669 QNIVGQFAALEFRSPNGEPERGRTMFEGLLATWPKRGDLWSWLLDLEEGVAGGDPTAVRD 1728

Query: 1751 LFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
            ++ER   +  L P + K  F +++++E+ +  + + E V  KA ++
Sbjct: 1729 VYERRTRVKGLKPNQAKKWFHRWVKWEEKLDPKGK-EKVMAKAQDW 1773



 Score =  177 bits (448), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 227/979 (23%), Positives = 441/979 (45%), Gaps = 119/979 (12%)

Query: 474  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRV 527
            G+ GF   S +    +D   E S  Y VG V K R++       + +LSF   ++    +
Sbjct: 475  GLGGFVHISRVKDGKVDALYESSGPYQVGSVHKGRVVGYSELDGQFHLSFEKSILDQQYI 534

Query: 528  SEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKS 582
              +D V +G++++  ++  V+    V  ++  IA G + G +   HL+D  L+H    + 
Sbjct: 535  RMED-VPIGAVITCEIEKLVIKEEGVRGLILNIADGIT-GYVAERHLSDIKLQHP---EK 589

Query: 583  VIKPGYEFDQLLVLDNE-SSNLLLSAKYSLINSAQQLPSDASHI--HPNSVVH----GYV 635
              + G +    ++  N  +  +  + K +L+NS      DA  I  H +++V     G +
Sbjct: 590  KFRKGMKVKARVLSTNPFTKEIRFTLKKTLVNS------DAPVIKSHEDAIVGLQVPGTI 643

Query: 636  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
              +   G  ++F GRL GF P S+  +    D ++ + +GQ V  +IL V+ E  R+ +S
Sbjct: 644  IKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQRRLIVS 703

Query: 696  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 755
             K       D     ++  L E +A   + K         E  +   +++ ++       
Sbjct: 704  CKDPGAFGLDKQTALKNLRLGELVAAKVTQK--------TEDQVFVELVDSQLK------ 749

Query: 756  VVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFRE 814
             ++     +D     + +Q A   + +G  +    +LD  +  R + L+ K   I   +E
Sbjct: 750  AILPVGHLTDKSA--SKNQFALKRISAGQTLSDLMVLDKNEKRRAIILTQKPSLIKASKE 807

Query: 815  AN--SNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 872
                SN +  K+     A     V       V +     L   LP+        S  D+ 
Sbjct: 808  GKLISNFEDAKQGTIVPAF----VRNVTQTAVFVQFAGNLSALLPKSRLPADVQSKPDFG 863

Query: 873  TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---V 929
              K+   +      +++ +  L       R+++     +  E +  ++ K  +  D    
Sbjct: 864  MHKYESIEV----KIVSVINDL------RRIMVAHATAAPIEVTEKQKDKVSAPADGLEF 913

Query: 930  GSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTAR 986
            G++V A IT +K  +L ++       GR+ +++V D   ++ +       F   Q +  +
Sbjct: 914  GTVVTAVITSVKETQLNVQLTDTQVQGRVDVSQVFDQWEDITDPKKPLDKFHRKQQIEVK 973

Query: 987  IIAKSNKPDMKKSFL----------WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1036
            +I   +  D +  FL           ELS K S +   E  + L  E   + +G     Y
Sbjct: 974  VIGVHDAKDHR--FLPISHRSAHSVLELSAKNSDVE-GENPNTLSLES--LKVGDSHIAY 1028

Query: 1037 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1096
            V  V  ++  + +S  ++ ++  ++++ + S L + +  F +G A+   V  I+ EK  L
Sbjct: 1029 VNNVTPQFLWVNLSPSVRGRVSAMEASDDLSLLNDLEANFPVGSALKVRVKFIDAEKNRL 1088

Query: 1097 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1156
             L  R   D    + VD       T + +  ++ G+I+K+      L+V++   + G VH
Sbjct: 1089 DLSARSSTDS---QGVD------WTSLKQNMVLPGKITKV--NERQLMVKLSDIVSGPVH 1137

Query: 1157 FTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1216
              ++ +         YD+   + L+ Y + Q ++  ++E+     G   + LS+R     
Sbjct: 1138 LPDMAD--------DYDD--INTLN-YKKNQIIRVAIVEVD---AGNKRLRLSMRP---- 1179

Query: 1217 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1276
                 S  LS+ +    K +  +  ++   +V+G+VKNV+ KG F+ L   + A V ++N
Sbjct: 1180 -----SRILSSTLPVADKEIANLSQVAAGDVVRGFVKNVSDKGLFVALGGHVTALVKIAN 1234

Query: 1277 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1336
            LSD +++  +  F + +LV GRVLSV+   K+VE++LK S +     + +   +++  G 
Sbjct: 1235 LSDRFLKDWKDLFQVDQLVKGRVLSVDSALKQVEMSLKAS-AVDEDYTPLVTYNDIKKGS 1293

Query: 1337 IVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1395
            +V G++++VE +G FI ++ ++N+ GLCH S+++++ V +   +Y+ G+ VK  +L+VD 
Sbjct: 1294 VVTGKVRKVEEFGAFILVDKSSNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDA 1353

Query: 1396 EKRRISLGMKSSYFKNDAD 1414
             KRRIS G++ S F  D D
Sbjct: 1354 VKRRISFGLRPSLFDEDTD 1372



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 184/711 (25%), Positives = 313/711 (44%), Gaps = 67/711 (9%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE--------------DNLLP 50
           G +  +N  DL + LP  L G      A+   L N ++                 D  L 
Sbjct: 152 GQITRINNLDLEVALPNNLTGHVSVV-AVSEQLTNRVQEAAAEQDDEEDESSDETDVDLK 210

Query: 51  TIFHVGQLVSCIVLQLDDDKKEIG----KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 106
           ++F VGQ +   V+   D+   IG    KRKI LSLR +    GL  + +     + A V
Sbjct: 211 SMFVVGQYLRVYVVSTMDES-AIGNGKNKRKIELSLRPTETNSGLGKDDIVANSTVMASV 269

Query: 107 KSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLS 163
            S+ED G ++  G+P    FLP   +  +S ID   ++ G +    V        V  LS
Sbjct: 270 VSVEDRGCVMDVGIPDLRAFLPHGEI--DSTIDQSRLQEGSVFLCQVTGKVSNGNVAQLS 327

Query: 164 SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 223
                +        +  +I+  +PG  V   + +    G+    + +   T D+ H    
Sbjct: 328 LQQKKLGSPKDIPTEATTINTFLPGTNVDVLITNTDRRGLAGKVIGHLDVTADLVHSGAG 387

Query: 224 FPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL----------HNRAPPSHV 271
              T+ +  Y    KV AR++   PT++    G++L P++           +   P   +
Sbjct: 388 PLGTDLEATYKVGSKVKARVICNFPTAKEPKFGISLLPHITSLTRKHPAKDNKNLPTEAL 447

Query: 272 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSC 328
            +  + ++  V RV+  +GL +D     +    +V IS V + +V  L +    Y+ GS 
Sbjct: 448 PISSLVEKCTVRRVESEIGLFVDTGIAGLG--GFVHISRVKDGKVDALYESSGPYQVGSV 505

Query: 329 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK----VIAVDSF-GAIVQ 383
            + R++G+  L+G      + S  +       DV  G V+  +    VI  +   G I+ 
Sbjct: 506 HKGRVVGYSELDGQFHLSFEKSILDQQYIRMEDVPIGAVITCEIEKLVIKEEGVRGLILN 565

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLA 441
              G+       H+S+ ++  P KKF+ G ++  RVL     +K I  T KKTLV S   
Sbjct: 566 IADGITGYVAERHLSDIKLQHPEKKFRKGMKVKARVLSTNPFTKEIRFTLKKTLVNSDAP 625

Query: 442 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 501
           ++ S+ +A   L   G I K++ +G  ++FY  ++GF P SE+      +P+  + +GQV
Sbjct: 626 VIKSHEDAIVGLQVPGTIIKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQV 685

Query: 502 VKCRIMSSIPASRRINLSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY 554
           V   I+   P  RR+ +S        + K T +     ++LG LV+  V   T + V V 
Sbjct: 686 VSVHILHVDPEQRRLIVSCKDPGAFGLDKQTALKN---LRLGELVAAKVTQKTEDQVFVE 742

Query: 555 VIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYS 610
           ++     K  +P  HL D    ++   +K  I  G     L+VLD NE    ++L+ K S
Sbjct: 743 LVDSQL-KAILPVGHLTDKSASKNQFALKR-ISAGQTLSDLMVLDKNEKRRAIILTQKPS 800

Query: 611 LINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
           LI ++++  L S+       ++V  +V N+ +T  FV+F G L+   P+S+
Sbjct: 801 LIKASKEGKLISNFEDAKQGTIVPAFVRNVTQTAVFVQFAGNLSALLPKSR 851



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 190/904 (21%), Positives = 337/904 (37%), Gaps = 150/904 (16%)

Query: 465  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 524
             G  +   +G+ G+     L       P   +  G  VK R++S+ P ++ I   F +K 
Sbjct: 560  RGLILNIADGITGYVAERHLSDIKLQHPEKKFRKGMKVKARVLSTNPFTKEIR--FTLKK 617

Query: 525  TRVSEDDLVK-------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-----D 572
            T V+ D  V        +G  V G +  + PN    ++   G  KG +P   ++     D
Sbjct: 618  TLVNSDAPVIKSHEDAIVGLQVPGTIIKLQPNGA--HIQFYGRLKGFLPVSEMSEAYIRD 675

Query: 573  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 632
              EH  + + V         +L +D E   L++S K        +  +   ++    +V 
Sbjct: 676  PNEHFRIGQVVSV------HILHVDPEQRRLIVSCKDPGAFGLDKQTA-LKNLRLGELVA 728

Query: 633  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNILDVNSETGR 691
              V    E   FV               VD Q +A L   +   +S   N   +     R
Sbjct: 729  AKVTQKTEDQVFVEL-------------VDSQLKAILPVGHLTDKSASKNQFALK----R 771

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 751
            I+     S     D +  +   +L +K +++++SK  G  +   E    G+++   V   
Sbjct: 772  ISAGQTLSDLMVLDKNEKRRAIILTQKPSLIKASKE-GKLISNFEDAKQGTIVPAFVRNV 830

Query: 752  NDFGVVVSFEEHSDVYGFITHHQLAGATVESG--------SVIQAAILDVAKAERLVDLS 803
                V V F    ++   +   +L  A V+S           I+  I+ V    R + ++
Sbjct: 831  TQTAVFVQFA--GNLSALLPKSRLP-ADVQSKPDFGMHKYESIEVKIVSVINDLRRIMVA 887

Query: 804  LKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVNAIVEIVKENYLVLSLPEYNHS 862
              T        A      +K+K K  A  D L     V A++  VKE  L + L +    
Sbjct: 888  HAT--------AAPIEVTEKQKDKVSAPADGLEFGTVVTAVITSVKETQLNVQLTD-TQV 938

Query: 863  IGYASVS-------DYNTQKFPQKQFLNGQSVIATVMA---------LPSSSTAGRLLLL 906
             G   VS       D    K P  +F   Q +   V+          LP S  +   +L 
Sbjct: 939  QGRVDVSQVFDQWEDITDPKKPLDKFHRKQQIEVKVIGVHDAKDHRFLPISHRSAHSVLE 998

Query: 907  LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
            L A +      +       S  VG    A +  + P  L +       GR+   E +DD 
Sbjct: 999  LSAKNSDVEGENPNTLSLESLKVGDSHIAYVNNVTPQFLWVNLSPSVRGRVSAMEASDDL 1058

Query: 967  SNVVENLFSNFKIGQTVTAR---IIAKSNKPDM-------KKSFLWELSIKPSMLTVSEI 1016
            S ++ +L +NF +G  +  R   I A+ N+ D+        +   W  S+K +M+     
Sbjct: 1059 S-LLNDLEANFPVGSALKVRVKFIDAEKNRLDLSARSSTDSQGVDW-TSLKQNMV----- 1111

Query: 1017 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1076
                            + G + KV+    ++ +S  +   + + D A +  ++      +
Sbjct: 1112 ----------------LPGKITKVNERQLMVKLSDIVSGPVHLPDMADDYDDINTLN--Y 1153

Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRIS 1134
               + +   ++ ++   K LRL +RP +  I   T+ +++  +     +  GD+V G + 
Sbjct: 1154 KKNQIIRVAIVEVDAGNKRLRLSMRPSR--ILSSTLPVADKEIANLSQVAAGDVVRGFVK 1211

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
             +     GL V +G H+   V    L +  + D     D  Q D        Q VK +VL
Sbjct: 1212 NVSD--KGLFVALGGHVTALVKIANLSDRFLKD---WKDLFQVD--------QLVKGRVL 1258

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             +   ++    VE+SL++S               VD     L    D+    +V G V+ 
Sbjct: 1259 SVDSALK---QVEMSLKASA--------------VDEDYTPLVTYNDIKKGSVVTGKVRK 1301

Query: 1255 VTSKGCFIMLSRKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1312
            V   G FI++ +  +   L   S ++D  V+   K +  G  V   VL V+ + +R+   
Sbjct: 1302 VEEFGAFILVDKSSNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRISFG 1361

Query: 1313 LKTS 1316
            L+ S
Sbjct: 1362 LRPS 1365



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 38/236 (16%)

Query: 596  LDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
            +D  +  L LS + S I S+  LP      ++ S +    VV G+V N+ + G FV   G
Sbjct: 1166 VDAGNKRLRLSMRPSRILSST-LPVADKEIANLSQVAAGDVVRGFVKNVSDKGLFVALGG 1224

Query: 650  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
             +T     +   D    D    + V Q V+  +L V+S   ++ +SLK        AS +
Sbjct: 1225 HVTALVKIANLSDRFLKDWKDLFQVDQLVKGRVLSVDSALKQVEMSLK--------ASAV 1276

Query: 710  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 769
             E +                + L        GSV+ GKV +  +FG  +  ++ S+V G 
Sbjct: 1277 DEDY----------------TPLVTYNDIKKGSVVTGKVRKVEEFGAFILVDKSSNVSGL 1320

Query: 770  ITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 818
                Q+A   V+        G  ++A +L+V   +R +   L+    D   +  SN
Sbjct: 1321 CHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRISFGLRPSLFDEDTDMESN 1376



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 136/309 (44%), Gaps = 37/309 (11%)

Query: 1126 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            G ++   I K++    GV GL++ I   + G V    L +I +  P     E +F     
Sbjct: 542  GAVITCEIEKLVIKEEGVRGLILNIADGITGYVAERHLSDIKLQHP-----EKKFR---- 592

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
              +G  VK +VL    T   T  +  +L+ +L              V++    ++  ED 
Sbjct: 593  --KGMKVKARVLS---TNPFTKEIRFTLKKTL--------------VNSDAPVIKSHEDA 633

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
               + V G +  +   G  I    +L   + +S +S+ Y+  P + F IG++V+  +L V
Sbjct: 634  IVGLQVPGTIIKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQVVSVHILHV 693

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
            +P  +R+ V+ K  D       +   L NL +G++V  ++ +     +F+ + ++ L  +
Sbjct: 694  DPEQRRLIVSCK--DPGAFGLDKQTALKNLRLGELVAAKVTQKTEDQVFVELVDSQLKAI 751

Query: 1363 CHVSELSEDHVDNIETIYR---AGEKVK-VKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
              V  L++      +   +   AG+ +  + +L  ++++R I L  K S  K   +   +
Sbjct: 752  LPVGHLTDKSASKNQFALKRISAGQTLSDLMVLDKNEKRRAIILTQKPSLIKASKEGKLI 811

Query: 1419 SSEEESDEA 1427
            S+ E++ + 
Sbjct: 812  SNFEDAKQG 820



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 168/386 (43%), Gaps = 46/386 (11%)

Query: 91   LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGIDV 140
            LSLE+++ G    AYV ++      ++   PS  G +            N+L  N  +  
Sbjct: 1014 LSLESLKVGDSHIAYVNNVTPQFLWVNLS-PSVRGRVSAMEASDDLSLLNDLEANFPV-- 1070

Query: 141  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 200
              G  L+  V+ ID  +  + LS+   T S+ V  D   +  ++++PG     ++  + E
Sbjct: 1071 --GSALKVRVKFIDAEKNRLDLSARSSTDSQGV--DWTSLKQNMVLPG-----KITKVNE 1121

Query: 201  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 260
              +M+      +G V +  + + +   N  N Y +++ +   I+ VD  ++ + L++ P 
Sbjct: 1122 RQLMVKLSDIVSGPVHLPDMADDYDDINTLN-YKKNQIIRVAIVEVDAGNKRLRLSMRPS 1180

Query: 261  LLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 311
             + +   P         S V  GD+         D+GL + L    T     A V I+++
Sbjct: 1181 RILSSTLPVADKEIANLSQVAAGDVVRGFVKNVSDKGLFVALGGHVT-----ALVKIANL 1235

Query: 312  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVV 368
            ++  ++  +  ++    V+ R+L            LKASA +     + T++D+K G VV
Sbjct: 1236 SDRFLKDWKDLFQVDQLVKGRVLSVDSALKQVEMSLKASAVDEDYTPLVTYNDIKKGSVV 1295

Query: 369  KGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG---AELVFRVLGVK 423
             GKV  V+ FGA  +V     V  LC    M++  +    K +K G     LV  V  VK
Sbjct: 1296 TGKVRKVEEFGAFILVDKSSNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVK 1355

Query: 424  SKRITVTHKKTLVKSKLAILSSYAEA 449
             +RI+   + +L      + S+ ++A
Sbjct: 1356 -RRISFGLRPSLFDEDTDMESNDSDA 1380



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 6/175 (3%)

Query: 360  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
            S V  G VV+G V  V   G  V   G V AL  + ++S+  +      F+V   +  RV
Sbjct: 1198 SQVAAGDVVRGFVKNVSDKGLFVALGGHVTALVKIANLSDRFLKDWKDLFQVDQLVKGRV 1257

Query: 420  LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGV 475
            L V S  K++ ++ K + V      L +Y +     +  G + K+E+ G F+     + V
Sbjct: 1258 LSVDSALKQVEMSLKASAVDEDYTPLVTYNDIKKGSVVTGKVRKVEEFGAFILVDKSSNV 1317

Query: 476  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
             G   RS++  +   + + +Y  G  VK  ++      RRI  SF ++P+   ED
Sbjct: 1318 SGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRI--SFGLRPSLFDED 1370


>gi|397620972|gb|EJK66030.1| hypothetical protein THAOC_13070 [Thalassiosira oceanica]
          Length = 2366

 Score =  194 bits (493), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 172/289 (59%), Gaps = 24/289 (8%)

Query: 1533 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1592
            ++P    +FERL+ SSPN S +WIKYMA+ LS+AD + AR++A RA   I  R+E EKLN
Sbjct: 2079 ESPENAADFERLLASSPNDSEIWIKYMAWHLSLADTDSARNVANRAFDRIEFRQEGEKLN 2138

Query: 1593 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL--------------GLYER 1638
            +W A   LE + G   ++++     RA Q  +PK+V+L +               G  + 
Sbjct: 2139 VWTALLTLELKCGT--DKSLNDAIDRASQQNNPKQVYLRVCEQLDKEVDAAASVGGSTDL 2196

Query: 1639 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKF 1697
                K ADE+  K  KKFK    VW+  +Q LLK  + E   ++++R+L SLP++KHI+ 
Sbjct: 2197 DTATKRADEMFAKACKKFKSKKSVWIAHLQYLLKGSRHEEAHSLLKRSLQSLPQYKHIEV 2256

Query: 1698 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757
            +S+ A +EF++G A+RGR++F+ +L + PKR DL  +Y+D+E++ GD+D  R LF   ++
Sbjct: 2257 MSKFAQIEFEHGSAERGRTIFDALLGKNPKRMDLLFVYIDKEVKCGDLDKARALFSSVVN 2316

Query: 1758 LSLPPKKMKF-------LFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1799
             S   +K KF       LFKK+   E+  G+E+  E VK +A  +V ++
Sbjct: 2317 PSSSDRKFKFSDKQMKSLFKKWFRMEEEHGDEDSQERVKDEARAFVSNS 2365



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 11/108 (10%)

Query: 408  KFKVGAELVFRVL--GVKSKRITVTHKKTLVKS--KLAILSSYAEATDRLITHGWITKIE 463
            K++VG  +  R L   V+ +   +T KKTL+      +++S Y EA    I  G+I+K++
Sbjct: 981  KYRVGQGVDVRCLTVDVRGRTAVLTAKKTLIAEGEDGSVISDYGEAEPGKIAAGFISKVD 1040

Query: 464  KHGCFVRFYNGVQGFAPR----SELGLDPGCEPSSMYHVGQVVKCRIM 507
              G  V FYN V G        SELG++   +P + Y VG VV  R++
Sbjct: 1041 GTGLTVTFYNNVHGRVSSRCLASELGVE---DPRTNYTVGDVVAARVV 1085



 Score = 42.0 bits (97), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 17/129 (13%)

Query: 185 LVPGMMVSTRVQSILENGVMLSF-LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN--- 240
           L PGM+    V++  +NG+ +SF    + G +D  HL         K    + ++     
Sbjct: 689 LQPGMLTEVSVEAYAKNGLCVSFHRGVYRGAIDEDHLGGHRGCEEGKGGRERRRRTRTRA 748

Query: 241 -----------ARILFVDPTSRAVGLTLNPYLLHNRAPPSH--VKVGDIYDQSKVVRVDR 287
                       RI+ VD  ++ V  ++ P++L  R   +   + VG I + ++V+R+D 
Sbjct: 749 CGGRACSADGIPRIVAVDTATKVVRFSIQPHILALRGEFAAFPLPVGTIVEGARVIRIDA 808

Query: 288 GLGLLLDIP 296
           G+G LL +P
Sbjct: 809 GIGALLALP 817


>gi|358379965|gb|EHK17644.1| hypothetical protein TRIVIDRAFT_76054 [Trichoderma virens Gv29-8]
          Length = 1796

 Score =  194 bits (492), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 113/285 (39%), Positives = 173/285 (60%), Gaps = 15/285 (5%)

Query: 1524 AAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1581
            A  +R  E DA  P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR IAERA+++
Sbjct: 1492 AQVDRTAELDAHGPQTASDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREIAERAIKS 1551

Query: 1582 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1641
            INIREE EKLN+WVAY NLE  YG+  ++ V  VF+RA QY D ++V+  L  +Y ++E+
Sbjct: 1552 INIREETEKLNVWVAYLNLEVAYGS--KQTVEDVFKRACQYNDEQEVYERLASIYIQSEK 1609

Query: 1642 NKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFI 1698
             K ADEL   M+KKF   +  VW      L   K +    +A++ RA   L  H     +
Sbjct: 1610 LKEADELFEAMLKKFGAKAPSVWTNYAHFLHVTKNEPARARALLPRATQQLDSHNGQNIV 1669

Query: 1699 SQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLF 1752
            S+ A LEF+  NG  +RGR+MFEG+L+ +PK+ DLW+  LD EI +     D   +R +F
Sbjct: 1670 SRFAALEFRSPNGEPERGRTMFEGLLAAWPKKGDLWNQLLDLEIGIASSSADHTAVRDVF 1729

Query: 1753 ERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            ER   +  L P++ +  F+++  +E+ +  + + + V  KA E+ 
Sbjct: 1730 ERRTRVKGLKPQQAEKWFRRWAAWEEKLDAKGK-DKVMAKAQEWA 1773



 Score =  187 bits (475), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 175/649 (26%), Positives = 291/649 (44%), Gaps = 47/649 (7%)

Query: 49  LPTIFHVGQLVSC-IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
           L T+F VGQ V   +V  +D      G+RKI LSLR S    GL  + V     + A V 
Sbjct: 207 LKTMFKVGQYVRAYVVSTMDGAAGGKGRRKIELSLRPSEANTGLEKDDVVPNSTVMASVV 266

Query: 108 SIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSS 164
           S+E+ G ++  G+P+  GFLP   +  +  ID   ++PG +    V   + + K+  LS 
Sbjct: 267 SVEERGCVMDLGIPNLNGFLPNGEI--DPLIDQERLQPGAVFLCQVTGKN-SNKIAQLSL 323

Query: 165 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
             D +           +I+  +PG +V+  V      G+    +     T D+ H     
Sbjct: 324 KQDKLGSTKAFPADATTINTFLPGTIVNILVSDNEGRGLAGKIMGAVDATADLIHSGIGP 383

Query: 225 PTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL----------HNRAPPSHVK 272
              + K  Y    KV ARI+   PT++   +G++L P+++            R P   + 
Sbjct: 384 NDDDLKAKYKIGSKVKARIICNFPTAKDPKLGISLLPHIMSLTQKQQDDDEKRRPIEVMP 443

Query: 273 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCV 329
           +    ++  V  V+  +GL +D     +    +V IS V + +V  L +    +K G+  
Sbjct: 444 ISSFVEKCTVRHVEPDIGLFVDTGIAGLG--GFVHISRVKDGKVDALYESSGPFKIGTVH 501

Query: 330 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGAIVQF 384
           R R++G+  ++GL +     S  E       D+  G V+ G++  +        G I++ 
Sbjct: 502 RGRVVGYNEMDGLFSISFAKSLLEQQYIRLEDIPLGSVINGEIEKLVIKEQGVTGLIIKI 561

Query: 385 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAI 442
             G+       HMS+  +  P KKF+ G ++  RVL V    +++ +T KKTLV S+   
Sbjct: 562 ADGISGFVTETHMSDIRLQHPEKKFREGMKVKARVLSVNFAKRQMRLTLKKTLVNSEAPT 621

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
           + SY + +  + T G I K++++G  ++FY  ++GF P SE+      +P   +  GQVV
Sbjct: 622 IKSYDDVSIGMQTLGTIVKVQQNGAHIQFYGKLRGFLPVSEMSEAYIRDPMEHFRAGQVV 681

Query: 503 KCRIMSSIPASRRINLSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 555
               +   P +RR  +S        + K T +     +KLG +VS  V   T + + V +
Sbjct: 682 SVHALEVDPEARRFIVSCKDPGAFGLEKQTALKN---LKLGDIVSAKVTQKTEDQIFVEL 738

Query: 556 IAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLI 612
           +     K  +P  HL D            I  G     L+VL+ NE+   + L+ K SL+
Sbjct: 739 VDSQL-KAILPVGHLTDKSTSKNQYAWKRISAGQTLSNLMVLEKNENRRAITLTQKPSLV 797

Query: 613 NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
            ++Q   L          +VV G+V NI  T  FV+F G L    PR +
Sbjct: 798 KASQDNNLLKSFHDAKVGAVVQGFVRNITVTAVFVQFAGSLNALLPRGR 846



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 129/636 (20%), Positives = 251/636 (39%), Gaps = 108/636 (16%)

Query: 233  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 292
            + +  KV AR+L V+   R + LTL   L+++ AP         YD   +    + LG +
Sbjct: 586  FREGMKVKARVLSVNFAKRQMRLTLKKTLVNSEAPTIKS-----YDDVSIGM--QTLGTI 638

Query: 293  LDIPSTPVSTPAY------VTISDVAEEEVRKLEKKYKEGSCVRVRIL-----GFRHL-- 339
            + +         Y      + +S+++E  +R   + ++ G  V V  L       R +  
Sbjct: 639  VKVQQNGAHIQFYGKLRGFLPVSEMSEAYIRDPMEHFRAGQVVSVHALEVDPEARRFIVS 698

Query: 340  --EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPH 396
              +  A G+ K +A + L       K G +V  KV         V+     +KA+ P+ H
Sbjct: 699  CKDPGAFGLEKQTALKNL-------KLGDIVSAKVTQKTEDQIFVELVDSQLKAILPVGH 751

Query: 397  MSEFEIVK---PGKKFKVGAELV-FRVLGVKSKR--ITVTHKKTLVKSKL--AILSSYAE 448
            +++    K     K+   G  L    VL     R  IT+T K +LVK+     +L S+ +
Sbjct: 752  LTDKSTSKNQYAWKRISAGQTLSNLMVLEKNENRRAITLTQKPSLVKASQDNNLLKSFHD 811

Query: 449  ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 508
            A    +  G++  I     FV+F   +    PR  L  +   +P       + ++ RI+S
Sbjct: 812  AKVGAVVQGFVRNITVTAVFVQFAGSLNALLPRGRLSAEAQSQPDFGLRKFESIEVRIIS 871

Query: 509  SIPASRRINLSFMMKP------------TRV-SEDDLVKLGSLVSGVVDVVTPNAVVVYV 555
            +IP  +RI ++    P            T+  + +D +  GS     +  +    + V +
Sbjct: 872  TIPDLKRILVAPADSPVAEPVSSKPKTSTKAPAPEDGLAFGSTAQARITSIKDTQLNVQL 931

Query: 556  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD----------QLLVLDNESSNLLL 605
            +     +G I    + D  E       ++ P    D          ++L + +   +  L
Sbjct: 932  VDSEI-QGRIDVSQIFDKWE------DIVDPKDPLDKFNKKQILRVKILGVHDAKDHRFL 984

Query: 606  SAKYSLINSAQQL---PSDASHIHPNSVV---------H-GYVCNIIETGCFVRFLGRLT 652
               +   +S  +L   PSD S+  PN +          H  +V N+     +V     + 
Sbjct: 985  PFSHRSAHSVMELTTKPSDLSNDAPNPISLDDLKVGDNHIAFVNNVTSQYLWVNLSPNVR 1044

Query: 653  GFAPRSKAVDGQR--ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASFM 709
            G     +A D      DL   + VG ++++ +  V+++  R+ LS +    S +   + +
Sbjct: 1045 GRISIMEASDDLSLLNDLEANFPVGSALKARVTSVDAKNNRLDLSARSPNASEAITWASL 1104

Query: 710  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 769
            +++ +L  KI     +K N  ++       +   + G VH            +  D YG 
Sbjct: 1105 KQNMILPGKI-----TKVNERQVL----VKLSETVSGPVH----------LPDMVDDYGS 1145

Query: 770  ITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
            +   +      + G +++ +I+DV  + + + LS++
Sbjct: 1146 VDTLKY-----KKGDIVRVSIVDVDPSNKRIRLSMR 1176



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 145/327 (44%), Gaps = 37/327 (11%)

Query: 143  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
            G  L+  V S+D     + LS+     S+ +T     +  ++++PG     ++  + E  
Sbjct: 1069 GSALKARVTSVDAKNNRLDLSARSPNASEAIT--WASLKQNMILPG-----KITKVNERQ 1121

Query: 203  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
            V++      +G V +  + + + + +    Y +   V   I+ VDP+++ + L++ P  +
Sbjct: 1122 VLVKLSETVSGPVHLPDMVDDYGSVDTLK-YKKGDIVRVSIVDVDPSNKRIRLSMRPSRI 1180

Query: 263  HNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
             +   P         + +  GDI         D+GL +LL    T     A+V IS++++
Sbjct: 1181 MSSTLPVADKEISKITQLATGDIVRGFVKNVADKGLFVLLGGQVT-----AFVKISNLSD 1235

Query: 314  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGM 366
              +++ +  ++    V+ RI+        AT  L+ S    +V         ++D+K G 
Sbjct: 1236 RFLKEWKDSFQIDQLVKGRIISL----DAATSQLELSLKSSVVDEDYTPPLGYNDIKEGQ 1291

Query: 367  VVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GV 422
            +V G V  V+ FGA  +V     V  LC    M++  +    K +K G ++  RVL   V
Sbjct: 1292 IVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNAVKDATKLYKEGDKVKARVLEVDV 1351

Query: 423  KSKRITVTHKKTLVKSKLAILSSYAEA 449
              +RI+   K +  + +   ++S +EA
Sbjct: 1352 SKRRISFGLKPSFFEDEDTDMASDSEA 1378



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 14/222 (6%)

Query: 322  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD--------VKPGMVVKGKVI 373
            KYK+G  VRV I+            ++ S         +D        +  G +V+G V 
Sbjct: 1150 KYKKGDIVRVSIVDVDPSNKRIRLSMRPSRIMSSTLPVADKEISKITQLATGDIVRGFVK 1209

Query: 374  AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTH 431
             V   G  V   G V A   + ++S+  + +    F++   +  R+  L   + ++ ++ 
Sbjct: 1210 NVADKGLFVLLGGQVTAFVKISNLSDRFLKEWKDSFQIDQLVKGRIISLDAATSQLELSL 1269

Query: 432  KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQGFAPRSELGLDPG 489
            K ++V         Y +  +  I  G + K+E+ G F+   N   V G   RS++  +  
Sbjct: 1270 KSSVVDEDYTPPLGYNDIKEGQIVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNAV 1329

Query: 490  CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 531
             + + +Y  G  VK R++    + RRI  SF +KP+   ++D
Sbjct: 1330 KDATKLYKEGDKVKARVLEVDVSKRRI--SFGLKPSFFEDED 1369


>gi|403220620|dbj|BAM38753.1| pre-rRNA processing protein [Theileria orientalis strain Shintoku]
          Length = 371

 Score =  194 bits (492), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/296 (39%), Positives = 175/296 (59%), Gaps = 23/296 (7%)

Query: 1517 EREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1573
            E E +IR  E+R+ + +    P    ++ERLV ++ +SS VWI YM+F L+  D+E AR 
Sbjct: 76   ENESKIREQEDRIADNEWMNNPSSVLDYERLVVTNSSSSVVWIAYMSFYLNSGDLEMARK 135

Query: 1574 IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL 1633
               R L+ I+ RE  EKLN+WVAY N+E  YG    + V++VF +A+QY D K ++L ++
Sbjct: 136  TVNRGLKAIDFREMGEKLNLWVAYLNMECIYG----DKVMEVFNKAVQYNDSKTIYLKMI 191

Query: 1634 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPR 1691
            G+     Q   A E+  K IKKF  S K+WL  ++   +  +  E  + + +  +  +P+
Sbjct: 192  GILVSNNQFDKAREICEKGIKKFYTSKKIWLAYLKLFYEHMKDFEAGRQLHKTCISRIPK 251

Query: 1692 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL---- 1747
            HK +   S TA+LE+K+G    G+  FE IL + PKR D+W+ YL   I+L   D     
Sbjct: 252  HKRLFITSSTALLEYKHG----GKMYFENILLDNPKRMDIWNQYLTAHIKLQISDTVTPK 307

Query: 1748 ------IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
                  +R LFERAISL L PKKMK +F K+LE+E + G E+  + V+ KA++YVE
Sbjct: 308  SERLKNVRNLFERAISLDLKPKKMKIIFAKWLEFECTHGNEKSKQMVQNKALKYVE 363


>gi|116207588|ref|XP_001229603.1| hypothetical protein CHGG_03087 [Chaetomium globosum CBS 148.51]
 gi|88183684|gb|EAQ91152.1| hypothetical protein CHGG_03087 [Chaetomium globosum CBS 148.51]
          Length = 1766

 Score =  193 bits (491), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 265/1149 (23%), Positives = 500/1149 (43%), Gaps = 192/1149 (16%)

Query: 339  LEGLATGILKASAFE----GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKA-- 390
            L G A  +L +   +    G V  H DV   +V  G     D    + Q+  G  +KA  
Sbjct: 349  LPGTAADVLVSEVSQHGVVGKVMGHLDVTADLVHSG--AGPDGVDIVAQYKVGSRIKARI 406

Query: 391  LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEAT 450
            +C  P+          K  K+G  ++  +L +K K      ++ L    LA  ++  E T
Sbjct: 407  ICTFPN---------AKLPKLGISVLPHILSLKPKTANKDSQEILPTRILAHSATVDECT 457

Query: 451  DRLITHGWITKIEKHGCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRI 506
             + +  G        G +V     G+ GF   S +    +D   E S  Y VG V   R+
Sbjct: 458  VQRVEPGI-------GLYVDVGVEGIPGFVHISRVKDGKVDSLFESSGPYKVGSVHPGRV 510

Query: 507  MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV---------YVIA 557
            +          LSF  K   V E   +++  +  G V       +V+           IA
Sbjct: 511  VGYNNFDGMFLLSFEKK---VLEQPFLRIEDIPVGAVVPGVVEKLVINQDGLGGLIVNIA 567

Query: 558  KGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSN-LLLSAKYSLINSA 615
             G S G +P  HL+D HL+H    +   + G +    ++  N + + L L+ K +L+NS 
Sbjct: 568  DGIS-GLVPEMHLSDVHLQHP---EKKFREGMKVKARVLSTNPARHQLRLTLKKTLVNS- 622

Query: 616  QQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 674
            + LP  +   +       G + N+++ G  V+F G+L GF P S        ++S+ Y  
Sbjct: 623  EALPIKSYDELAVGLQAPGTIVNVLQHGAIVQFYGQLRGFLPVS--------EMSEAYI- 673

Query: 675  GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 734
                                            S  +EHF + + +A+ +           
Sbjct: 674  --------------------------------SDPKEHFRVGQTLALKK----------- 690

Query: 735  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA------ 788
                 IG ++  KV +  +  + V   ++S        H    +  ++ S ++       
Sbjct: 691  ---LQIGDLVSAKVTQKTEDDIFVELTDNSLKAVLPVAHLTDKSVSKTQSALKKIHVNQT 747

Query: 789  ----AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 844
                 +L+  +A R + LS K   +   +E      A   +   E +   G  + + A  
Sbjct: 748  LSELVVLEKNEARRSITLSHKPSLVQASKEGKLLASADDARLGNEVA---GFVRNITATA 804

Query: 845  EIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 903
              V+    L   LP+        S    + Q  P       QS+   + ++      GRL
Sbjct: 805  AFVQFAGKLTALLPK--------SKLPRDAQDKPSFGMYKSQSLTVKITSI--DKDLGRL 854

Query: 904  LLLLKAISETETSSSKRAKKKS--SYD----------VGSLVQAEITEIKPLELRLKFGI 951
            ++ + ++++ E     +  +K+  S D          +G L +A +   K  +L ++   
Sbjct: 855  VVAIPSVADDEAKKVVKPTEKAINSLDDSITSADDLAIGKLTKARVKSAKETQLNVQIAD 914

Query: 952  GFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARII----AKSNK--PDMKKSF--L 1001
               GRI +++V D   ++   +     FK  + +  R++    A++++  P   +S   +
Sbjct: 915  NIQGRIDVSQVFDKWEDIPDAKRPLKRFKPNEILEVRVLGVHDARNHRFLPITHRSSHSV 974

Query: 1002 WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILD 1061
             ELS KPS L    +   L  ++  + +G     +V  V + +  + +S +++ ++  ++
Sbjct: 975  LELSTKPSDLKADTLPESLSLDK--IEVGSTHVAFVNNVASNYLWVNLSPNVRGRINAME 1032

Query: 1062 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1121
            ++ + ++L   ++ F +G A+   VL+++KEK+ + L  R      S +   +S D +Q 
Sbjct: 1033 ASDDLAKLANLEKSFPVGSALQVRVLAVDKEKERVDLSAR-----TSGEAAQLSWDKIQ- 1086

Query: 1122 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
               +G ++  +++K+      ++V++   + G VH  +L +               +PLS
Sbjct: 1087 ---QGLVLPAKVTKV--NDRQVIVKLSELVAGPVHLADLADDYDD----------ANPLS 1131

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
             +   + V+  V+E+ ++ +    V LS+R S           L++ +    K + K   
Sbjct: 1132 -HSRNEIVRVAVVEVDKSNK---RVRLSMRPS---------KVLNSSLPVKDKEVTKNTK 1178

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L    I++G+V+NV+ KG F+ L   L A V + NLSD Y++  ++ + + +LV GR++S
Sbjct: 1179 LEVGDIIRGFVRNVSDKGLFVSLGGDLVALVKIKNLSDSYLKDWKEHYQVDQLVKGRIIS 1238

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLV 1360
            V     R+E+ LK S         +  +++L  G  + G++++VE +G FI I  + NL 
Sbjct: 1239 VA--EGRIELNLKPS-VVDKDYVPLTTIADLKEGQTITGKVRKVEEFGAFIEISGSMNLS 1295

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMS 1419
            GLCH SE+++ +V +  T+Y  G++VK ++LKVD EK+RI+LG+K SYFK+ +AD++ + 
Sbjct: 1296 GLCHRSEMADRNVKDARTLYNEGDRVKARVLKVDLEKKRINLGLKPSYFKDGEADDMDVD 1355

Query: 1420 SEEESDEAI 1428
            SE+E   A+
Sbjct: 1356 SEDEDAGAV 1364



 Score =  189 bits (481), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 195/740 (26%), Positives = 326/740 (44%), Gaps = 79/740 (10%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL--------------LP 50
           G V  +N  D+VI LP  L G        +P+     E+ E                 L 
Sbjct: 150 GTVCAINALDIVIALPNNLVGHVPITSISEPLTQRLEESAEKEEDDDEPEDEGVDDVDLK 209

Query: 51  TIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
           ++F +GQ V   V   LD+      KR I L+L  +    G+S + V E   L A V S+
Sbjct: 210 SLFQIGQYVRAYVTSTLDESAPGKSKRHIGLALDPAHSNTGISEQDVVENCTLMAAVASV 269

Query: 110 EDHGYILHFGLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDP 166
           EDHG+++   +      GFLPR  L ++   + ++PG +L  +V +   + KVV LS+  
Sbjct: 270 EDHGFVMDISIAESKLRGFLPRKQLDKSIPEESLQPGSVLLCIVANKVASGKVVQLSTLS 329

Query: 167 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 226
           D +    +   +  +I   +PG      V  + ++GV+   + +   T D+ H       
Sbjct: 330 DRIGNPKSSPSEATTIGSFLPGTAADVLVSEVSQHGVVGKVMGHLDVTADLVHSGAGPDG 389

Query: 227 TNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVKVGDIY------- 277
            +    Y    ++ ARI+   P ++   +G+++ P++L  +   ++    +I        
Sbjct: 390 VDIVAQYKVGSRIKARIICTFPNAKLPKLGISVLPHILSLKPKTANKDSQEILPTRILAH 449

Query: 278 ----DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVR 330
               D+  V RV+ G+GL +D+    +  P +V IS V + +V  L      YK GS   
Sbjct: 450 SATVDECTVQRVEPGIGLYVDVGVEGI--PGFVHISRVKDGKVDSLFESSGPYKVGSVHP 507

Query: 331 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK----VIAVDSFGA-IVQFP 385
            R++G+ + +G+     +    E       D+  G VV G     VI  D  G  IV   
Sbjct: 508 GRVVGYNNFDGMFLLSFEKKVLEQPFLRIEDIPVGAVVPGVVEKLVINQDGLGGLIVNIA 567

Query: 386 GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAIL 443
            G+  L P  H+S+  +  P KKF+ G ++  RVL     R  + +T KKTLV S+   +
Sbjct: 568 DGISGLVPEMHLSDVHLQHPEKKFREGMKVKARVLSTNPARHQLRLTLKKTLVNSEALPI 627

Query: 444 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 503
            SY E    L   G I  + +HG  V+FY  ++GF P SE+      +P   + VGQ + 
Sbjct: 628 KSYDELAVGLQAPGTIVNVLQHGAIVQFYGQLRGFLPVSEMSEAYISDPKEHFRVGQTLA 687

Query: 504 CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 563
            + +                          ++G LVS  V   T + + V +      K 
Sbjct: 688 LKKL--------------------------QIGDLVSAKVTQKTEDDIFVELTDNSL-KA 720

Query: 564 TIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLLLSAKYSLINSAQQ- 617
            +P  HL D  +  +  +S +K         +L+VL+ NE+  ++ LS K SL+ ++++ 
Sbjct: 721 VLPVAHLTD--KSVSKTQSALKKIHVNQTLSELVVLEKNEARRSITLSHKPSLVQASKEG 778

Query: 618 -LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
            L + A      + V G+V NI  T  FV+F G+LT   P+SK     +   S   Y  Q
Sbjct: 779 KLLASADDARLGNEVAGFVRNITATAAFVQFAGKLTALLPKSKLPRDAQDKPSFGMYKSQ 838

Query: 677 SVRSNILDVNSETGRITLSL 696
           S+   I  ++ + GR+ +++
Sbjct: 839 SLTVKITSIDKDLGRLVVAI 858



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 79/114 (69%), Gaps = 2/114 (1%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L+ + P+T  ++ERL+   P+SS +WI YMA  + + D+  AR +AERA++TINI+EE E
Sbjct: 1433 LDINGPQTSSDYERLLLGQPDSSELWIAYMASQMQINDLASARQVAERAIKTINIKEETE 1492

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1643
            KLN+W+AY NLE  YG   +E V +VF+RA  Y D ++VH  L  +Y ++ ++K
Sbjct: 1493 KLNVWIAYLNLEVAYGT--DETVEEVFKRACTYNDDQEVHERLASIYIQSGKHK 1544



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 67/110 (60%), Gaps = 7/110 (6%)

Query: 1697 FISQTAILEFKNGVADR--GRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRG 1750
             + + A LEF++   DR  GR++FE +L+ YP++ DLW+  LD E+ +    GDV ++R 
Sbjct: 1641 LLPKFAALEFRSPHGDREQGRTLFENLLATYPRKFDLWNQLLDLEVSVPVEDGDVAVVRD 1700

Query: 1751 LFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1799
            LF+R   +  L P++ K  F+++ ++E+  G+ +  E V  +A+E+  + 
Sbjct: 1701 LFDRGSKVKGLKPRQAKAWFRRWAKWEEERGDAKSRERVSARAVEWARAA 1750



 Score = 45.8 bits (107), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 122/575 (21%), Positives = 213/575 (37%), Gaps = 121/575 (21%)

Query: 281  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 340
            K+  +D+ LG L+            V I  VA++E +K+ K  ++   +          +
Sbjct: 843  KITSIDKDLGRLV------------VAIPSVADDEAKKVVKPTEK--AINSLDDSITSAD 888

Query: 341  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
             LA G L  +  +    T  +V+    ++G++     F      P               
Sbjct: 889  DLAIGKLTKARVKSAKETQLNVQIADNIQGRIDVSQVFDKWEDIP--------------- 933

Query: 401  EIVKPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITH 456
            +  +P K+FK    L  RVLGV   R    + +TH+ +    +L+   S  +A D L   
Sbjct: 934  DAKRPLKRFKPNEILEVRVLGVHDARNHRFLPITHRSSHSVLELSTKPSDLKA-DTLPES 992

Query: 457  GWITKIEKHGCFVRFYNGV-----------------QGFAPRSELGLDPGCEPSSMYHVG 499
              + KIE     V F N V                        +L      E S  + VG
Sbjct: 993  LSLDKIEVGSTHVAFVNNVASNYLWVNLSPNVRGRINAMEASDDLAKLANLEKS--FPVG 1050

Query: 500  QVVKCRIMSSIPASRRINLSFMMKPTRVSED------DLVKLGSLVSGVVDVVTPNAVVV 553
              ++ R+++      R++LS      R S +      D ++ G ++   V  V    V+V
Sbjct: 1051 SALQVRVLAVDKEKERVDLS-----ARTSGEAAQLSWDKIQQGLVLPAKVTKVNDRQVIV 1105

Query: 554  ----YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSA 607
                 V    +          A+ L H+           E  ++ V++ + SN  + LS 
Sbjct: 1106 KLSELVAGPVHLADLADDYDDANPLSHSR---------NEIVRVAVVEVDKSNKRVRLSM 1156

Query: 608  KYS-LINSAQQLPSDASHIHPNS------VVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 660
            + S ++NS+  LP     +  N+      ++ G+V N+ + G FV   G L         
Sbjct: 1157 RPSKVLNSS--LPVKDKEVTKNTKLEVGDIIRGFVRNVSDKGLFVSLGGDLVALVKIKNL 1214

Query: 661  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 720
             D    D  + Y V Q V+  I+ V    GRI L+LK         S + + ++    IA
Sbjct: 1215 SDSYLKDWKEHYQVDQLVKGRIISVAE--GRIELNLK--------PSVVDKDYVPLTTIA 1264

Query: 721  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 780
             L+                 G  I GKV +  +FG  +      ++ G     ++A   V
Sbjct: 1265 DLKE----------------GQTITGKVRKVEEFGAFIEISGSMNLSGLCHRSEMADRNV 1308

Query: 781  ES-------GSVIQAAILDVAKAERLVDLSLKTVF 808
            +        G  ++A +L V   ++ ++L LK  +
Sbjct: 1309 KDARTLYNEGDRVKARVLKVDLEKKRINLGLKPSY 1343


>gi|261326050|emb|CBH08876.1| rRNA biogenesis protein, putative [Trypanosoma brucei gambiense
            DAL972]
          Length = 679

 Score =  193 bits (490), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 181/307 (58%), Gaps = 12/307 (3%)

Query: 1504 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1563
            E  N +  K  K + E+ I A E R +E   P +P+EF+RL+ +SPN+S++W+++M   +
Sbjct: 324  ENTNVNRSKIRKRKLEETIDAYE-RSMETAVPSSPEEFQRLLLASPNNSYLWVQWMTHHV 382

Query: 1564 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1623
            S+   E+AR +AE+AL TI +RE  E+LN+WVAY NLEN +G    E++  VF+RAL++ 
Sbjct: 383  SLQQFEEARLVAEKALTTIGVRETQERLNVWVAYMNLENLHGT--AESLASVFKRALRHA 440

Query: 1624 -DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAV 1681
             D   V+  L  ++  T +      L   M+ K +   +VW R    L+   +++ ++ V
Sbjct: 441  LDELVVYERLADIFSATRKFNQLLSLCRAMVSKNRKVPRVWERLGTVLIDHNKRDQLKRV 500

Query: 1682 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1741
            ++    +L R ++   +    + E++NG  + GR++FEG+L   PK++D+WS+YLDQE+ 
Sbjct: 501  LKDMSDALKRDEYALVVVHLGVHEYRNGSVENGRALFEGLLLRMPKKSDVWSVYLDQELG 560

Query: 1742 L-------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794
            L            +RGLFERA+S S   K M+ +  +++ +E++ G    +E VK +A  
Sbjct: 561  LLARRSEVASAVFVRGLFERAVSTSFSAKVMQQVLTRFMSFERAHGTPADVEKVKARARS 620

Query: 1795 YVESTLA 1801
            YVE+ ++
Sbjct: 621  YVEAKIS 627


>gi|156086054|ref|XP_001610436.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154797689|gb|EDO06868.1| conserved hypothetical protein [Babesia bovis]
          Length = 383

 Score =  192 bits (489), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 177/299 (59%), Gaps = 19/299 (6%)

Query: 1518 REQEIRAAEERLLEKDAP---RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1574
            +E E+RAAE RLLE ++     T  +FE+ V +  NS+ +WI+YMAF L    +E AR +
Sbjct: 85   KETELRAAERRLLENESSGSVETVFDFEKRVATGGNSASLWIEYMAFHLRNGSLEGARQV 144

Query: 1575 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1634
              R L+ I+ R  +E+L +WVA  N+E  YG+  +E    VFQ +L++ DPK ++L ++ 
Sbjct: 145  VRRGLERIDFRAISERLTLWVANINMECLYGDRVKE----VFQESLRFNDPKTMYLKMIS 200

Query: 1635 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRH 1692
            ++ + ++   A E+  + IKK   S K W   ++ L +  +  E  + V  R LL +P H
Sbjct: 201  IFVKNDRLSDAIEVCERGIKKLGKSKKFWQAYLRLLFEHVKDFEEARKVYNRCLLRIPDH 260

Query: 1693 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI----------RL 1742
            K +  ++ TA+LEFK G A+RG+ MFE +L + P+R D+W  Y+   I          R 
Sbjct: 261  KKVYMMTSTALLEFKFGSAERGQMMFENLLLDNPRRMDIWMQYICAYIKFQLTSPGIKRS 320

Query: 1743 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
              +  IR LF R I+L L PKKMK +++K++E+E + G+ +    V+QKA+EYVES  A
Sbjct: 321  DGLRSIRNLFLRIITLDLKPKKMKVIYQKWMEFECNHGDSKSKSLVQQKALEYVESVEA 379


>gi|409083836|gb|EKM84193.1| hypothetical protein AGABI1DRAFT_117625 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1480

 Score =  192 bits (489), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 230/918 (25%), Positives = 393/918 (42%), Gaps = 109/918 (11%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---DNEIEANEDNL------ 48
           MK+ G V  +    L+I LP  L G   + + +     +L   DN  E +++++      
Sbjct: 120 MKILGQVVSIIPLGLIISLPNQLYGHVPITQISSQFTTVLERFDNRDEGSDEDIAMEDED 179

Query: 49  -------LPTIFHVGQLVSCIVLQLD----DDKKEIGK---------RKIWLSLRLSLLY 88
                  L  +FHVGQ V  IV  +      D   +GK         R++ LSL    + 
Sbjct: 180 EDTQTPDLYGMFHVGQYVRAIVTNVHAAGVSDIMGVGKLRDDLAKASRRMELSLVPEKVN 239

Query: 89  KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 148
            G+    ++ G  ++A VKS+EDHGY L  G+   +GFL   ++  +S   +  G ++  
Sbjct: 240 AGVQKTDLKSGFTISAAVKSLEDHGYNLDLGVQDVSGFLSFEDVGRDSP-KLHVGHVINV 298

Query: 149 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS----IDLLVPGMMVSTRVQSILENGVM 204
            V  I    +V  ++ D          D+  +S    ++ ++PG +V   + SI   G+ 
Sbjct: 299 SVSKISANNRVCNVTMDFSLSFSSNHTDIFQLSEISSVNSVLPGTLVQCLITSINPEGIN 358

Query: 205 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---VDPTSRAVGLT----- 256
           L  L +F GTVD FHL    P       +    KV ARIL+     P   ++ L+     
Sbjct: 359 LQVLGFFDGTVDQFHLPKNPPKP-----FKVGTKVKARILYNYSASPPKFSLALSEHVIR 413

Query: 257 LNPYLLHNRAPPSHVK----VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA 312
           L PY++      S ++    VG + D  KV RV++  GL++ +         +V IS ++
Sbjct: 414 LRPYMVSIGEDSSLLEEAYPVGTVLDAVKVSRVEKERGLIVGLDG---QLEGFVHISHLS 470

Query: 313 EEEVRKLEK--KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 370
           ++ V  L     +K G+  R R+ G    +GL    LK S  E      +DV  G  V G
Sbjct: 471 DDHVPSLTSIGPWKPGTIHRARVTGHFTFDGLLQLSLKRSVLEQKYIQVTDVGVGQTVTG 530

Query: 371 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RIT 428
            +  +      V     +  +    H ++  +  P K+FKVG  +  RVL V ++  RI+
Sbjct: 531 TIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRVLVVDAEKNRIS 590

Query: 429 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 488
           +T KKTL+ S+L ILS+  +     + H  + K+      V FYN ++   P  E+   P
Sbjct: 591 LTAKKTLLNSQLPILSNIEDVQPEDLAHAVVFKVHDKHLLVEFYNNLKAVIPLKEVSETP 650

Query: 489 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-DL--VKLGSLVSGVVDV 545
               S  + VG+VVK RI+S     RRI  S        S   D+  V++G++V GVV  
Sbjct: 651 VNSLSEAFSVGKVVKVRIISVQQNQRRIVASIRRATASGSATPDISKVEVGNIVEGVVAE 710

Query: 546 VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMKSVIKPGYEFDQLLVLDNESSN-- 602
           +  +  +++ +     K     ++LA+H       +KS +K G    +L+V+        
Sbjct: 711 IHKDNAILF-LQPSNVKALHSLKNLANHRAIGLPQLKSELKVGERLYELVVVTRNLEKGF 769

Query: 603 -LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 661
            ++ +A  S +    ++      IH   +V G V      G  V+    + G    +   
Sbjct: 770 VIVANAPKSKLTLPSKIALSIDTIHIGQIVSGRVIRHTRLGALVKVTSHIGGIIHPTDVS 829

Query: 662 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 721
           D     LS    V   V++ I+ V+ E  R+TLS +QS                  ++  
Sbjct: 830 DNFDNGLSYP-AVDSLVKAAIVKVDEEKRRVTLSTRQS------------------RLRP 870

Query: 722 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY--------GFITHH 773
            Q+++    E+  +   I+G+ + G V    D G+ V+   + D           FI   
Sbjct: 871 DQTTQVVDKEINDISDLILGASVRGFVKSIADHGLFVTVGRYIDARVQIRELFDDFIKDW 930

Query: 774 QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 833
           +      +   +++  IL V    + V+L+        FR  + + + ++ + KR  S D
Sbjct: 931 K---PRFQVNQLVKGRILSVDIENQKVELT--------FRSGDLSARQREAQTKRSPS-D 978

Query: 834 LGVHQTVNAIVEIVKENY 851
           L   + V+ I++ + ENY
Sbjct: 979 LHEGEKVDGIIKRI-ENY 995



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 162/606 (26%), Positives = 282/606 (46%), Gaps = 72/606 (11%)

Query: 833  DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 892
            D+GV QTV   ++ + ++ + ++L E    + + +       K P K+F  G S+   V+
Sbjct: 521  DVGVGQTVTGTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRVL 580

Query: 893  ALPS-----SSTAGRLLL--LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 945
             + +     S TA + LL   L  +S  E    +            L  A + ++    L
Sbjct: 581  VVDAEKNRISLTAKKTLLNSQLPILSNIEDVQPE-----------DLAHAVVFKVHDKHL 629

Query: 946  RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1005
             ++F       I + EV++   N +   FS   +G+ V  RII+             +  
Sbjct: 630  LVEFYNNLKAVIPLKEVSETPVNSLSEAFS---VGKVVKVRIISVQQN---------QRR 677

Query: 1006 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS-RHLKAQLFILDSA- 1063
            I  S+   +  GS    +   V +G  V G V ++  + A+L +   ++KA   + + A 
Sbjct: 678  IVASIRRATASGSATP-DISKVEVGNIVEGVVAEIHKDNAILFLQPSNVKALHSLKNLAN 736

Query: 1064 YEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            +    L + +    +G+ +   V+ + N EK  + +   P         + +S D     
Sbjct: 737  HRAIGLPQLKSELKVGERLYELVVVTRNLEKGFVIVANAPKSKLTLPSKIALSIDT---- 792

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            IH G IV GR+  I     G +V++  H+ G +H T+     VSD    +D G    LS 
Sbjct: 793  IHIGQIVSGRV--IRHTRLGALVKVTSHIGGIIHPTD-----VSD---NFDNG----LSY 838

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
                  VK  ++++    R         R +L    S    D +T V    K +  I DL
Sbjct: 839  PAVDSLVKAAIVKVDEEKR---------RVTLSTRQSRLRPDQTTQV--VDKEINDISDL 887

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                 V+G+VK++   G F+ + R +DA+V +  L D +++  +  F + +LV GR+LSV
Sbjct: 888  ILGASVRGFVKSIADHGLFVTVGRYIDARVQIRELFDDFIKDWKPRFQVNQLVKGRILSV 947

Query: 1303 EPLSKRVEVTLKTSD--SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            +  +++VE+T ++ D  +R        + S+LH G+ V G IKR+E+YGLFI IE T + 
Sbjct: 948  DIENQKVELTFRSGDLSARQREAQTKRSPSDLHEGEKVDGIIKRIENYGLFIQIEGTKMS 1007

Query: 1361 GLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            GLCH SELS++   ++      +R G++VK  ++++D  K+RIS  +K S F    ++L 
Sbjct: 1008 GLCHKSELSDNKDADVSVALQNFRQGDRVKAVVIEID--KKRISFSLKPSLFVE--EDLD 1063

Query: 1418 MSSEEE 1423
             S+E+E
Sbjct: 1064 GSAEDE 1069


>gi|71403744|ref|XP_804641.1| rRNA biogenesis protein [Trypanosoma cruzi strain CL Brener]
 gi|70867719|gb|EAN82790.1| rRNA biogenesis protein, putative [Trypanosoma cruzi]
          Length = 672

 Score =  192 bits (488), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 189/330 (57%), Gaps = 19/330 (5%)

Query: 1480 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD 1539
            + + D ++ I  N G TD       KN    +K  K + E+ I A E R +    P +PD
Sbjct: 313  ETESDENDSIDDNDGTTD-------KNGGGEQKLRKRKIEEAIDAYE-RSMGTAVPSSPD 364

Query: 1540 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1599
            EF RL+ ++PN+S++W+++MA  +++   E+ R +AE+AL TI +RE  E+LN+WVAY N
Sbjct: 365  EFRRLLMAAPNNSYLWVQWMAHHVALQQQEETRLVAEKALSTIGVRETQERLNVWVAYMN 424

Query: 1600 LENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658
            LEN +G    E++  VF+RALQ   D   V+  L  ++  T +      L   M+ KF++
Sbjct: 425  LENIHGT--VESLSAVFKRALQRAPDQLVVYERLADIFSATRKPNQLLALCRTMVSKFRN 482

Query: 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
              + W R  + L+ Q +++ ++ +V+    +L R  +   + + A+ E+K+G  + GR++
Sbjct: 483  EQRTWERLGKVLIDQKKRDQLRRMVKDMGGALRRDAYSLTVVRLAVHEYKSGSVENGRAL 542

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERAISLSLPPKKMKFLFK 1770
            FEG++   PK++D+WS YLDQE+ L         V L+R L ERA++ +   K M+    
Sbjct: 543  FEGLVVRMPKKSDVWSAYLDQEMALLVRRDESAAVPLVRALLERAVATNFSAKVMQQFLT 602

Query: 1771 KYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
            +++ +E++ G    +E VK +A  YVE+ +
Sbjct: 603  RFMSFERAYGSPADVEKVKTRARSYVEAKI 632


>gi|358399275|gb|EHK48618.1| hypothetical protein TRIATDRAFT_145463 [Trichoderma atroviride IMI
            206040]
          Length = 1793

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/285 (38%), Positives = 172/285 (60%), Gaps = 15/285 (5%)

Query: 1524 AAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1581
            A  +R  E DA  P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR +AERA+++
Sbjct: 1491 AQVDRTAELDAHGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREVAERAIKS 1550

Query: 1582 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1641
            INIREE EKLN+WVAY NLE  YG+  +  V  VF+RA QY D ++V+  L  +Y ++E+
Sbjct: 1551 INIREETEKLNVWVAYLNLEVAYGS--KHTVEDVFKRACQYNDEQEVYERLASIYIQSEK 1608

Query: 1642 NKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFI 1698
             K ADEL   M+KKF   +  VW      L   K +    +A++ RA   L  H     +
Sbjct: 1609 LKQADELFEAMLKKFGAKAPSVWTNYAHFLHVTKNEPARARALLPRATQQLDSHNGQNMV 1668

Query: 1699 SQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLF 1752
            S+ A LEF+  NG  +RGR+MFEG+L+ +PK+ D+W+  LD EI +     D   +R +F
Sbjct: 1669 SRFAALEFRSPNGEPERGRTMFEGLLAAFPKKGDIWNQLLDLEIGIASSSADHTAVRDVF 1728

Query: 1753 ERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            ER   +  L P++ +  F+++  +E+ +  + + + V  KA E+ 
Sbjct: 1729 ERRTRVKGLKPQQAEKWFRRWAAWEEKLDPKGK-DRVMAKAQEWA 1772



 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 198/716 (27%), Positives = 313/716 (43%), Gaps = 76/716 (10%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL---------------L 49
           G V ++N+ +L I LP  L G A     +   L + +E   D                 L
Sbjct: 149 GQVTKINKLNLEISLPNNLTGHASIV-TISEQLTSRLEGGADKESDSDEEESSDESDINL 207

Query: 50  PTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
            +IF VGQ V   V+   D      GK+KI LSLR S    GL  + V     + A V S
Sbjct: 208 QSIFKVGQYVRAYVVSTSDSTASGKGKKKIELSLRPSETNTGLEKDDVVPNSTVMASVVS 267

Query: 109 IEDHGYILHFGLPSFTGFLPRNNLAENSGID-------VKPGLLLQGVVRSIDRTRKVVY 161
           +ED G ++  G+P+  GFLP      NS ID       ++PG +    V       K V 
Sbjct: 268 VEDRGCVMDLGIPNLNGFLP------NSEIDPLIDHERLQPGAVFLCQVTG-KGAAKTVQ 320

Query: 162 LSSDPDTVSKCVTKDLKG--ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
           LS   D +    TK L G   +I+  +PG +V+  V      G+    +     T D+ H
Sbjct: 321 LSLMQDKLGS--TKALPGDATTINTFLPGTLVNILVSENEGRGLGGKIMGAVDATADLIH 378

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL-------------HN 264
                   + K  Y    KV ARI+   PT++   +G++L P+++               
Sbjct: 379 SGVGPNDADLKAKYKVGSKVKARIICNFPTAKDPKLGISLLPHIMSLTRKRQDTKSKTEQ 438

Query: 265 RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK-- 322
             P   + +    ++  V  V+  +GL +D     +    +V IS V + +V  L +   
Sbjct: 439 PLPIEVMPISSFVEKCTVRHVEDNIGLFVDTGVAGLG--GFVHISRVKDGKVDALYETSG 496

Query: 323 -YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-----D 376
            YK G+  R RI+G+  ++GL +     S  +       DV  G V+ G++  +      
Sbjct: 497 PYKVGTVHRGRIVGYNEMDGLFSISFAKSILDQQYIRVEDVPIGSVINGEIEKLVIKEQG 556

Query: 377 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKT 434
             G I++   G+    P  H+S+  +  P KKF+VG ++  RVL      +++ +T KKT
Sbjct: 557 VTGLIIKVAEGITGFVPENHLSDIRLQNPEKKFRVGMKVKARVLSTNPLKRQMRLTLKKT 616

Query: 435 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 494
           LV S+   + SY E +  + T G I K++K+G  V+FY  ++GF P SE+      +P  
Sbjct: 617 LVNSEAPTIKSYDEVSIGMQTLGTIVKVQKNGAHVQFYGHLKGFLPVSEMSEAYIRDPME 676

Query: 495 MYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTP 548
            +  GQV+    +   P +RR  +S      F +      +D  +KLG +VS  V   T 
Sbjct: 677 HFRAGQVLSVHALEVDPEARRFIVSCKDPSAFGLDKQTALKD--LKLGDVVSAKVTQKTE 734

Query: 549 NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLD-NESSN-LLL 605
           + + V ++     K  +P  HL D            I  G     L+VL+ NE+   + L
Sbjct: 735 DQIFVELVDSQL-KAILPVGHLTDKSSSKNQYAWKRISTGQTLSDLVVLEKNENRRAITL 793

Query: 606 SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
           + K SL+ ++Q+  L          ++V G+V NI  T  FV+F G L    PR +
Sbjct: 794 TQKPSLVKASQENKLLKSFHDAKVGAIVQGFVRNITVTAVFVQFAGNLNALLPRGR 849



 Score = 60.8 bits (146), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 143/339 (42%), Gaps = 39/339 (11%)

Query: 202 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 261
           G+++      TG V   HL +     N +  +    KV AR+L  +P  R + LTL   L
Sbjct: 559 GLIIKVAEGITGFVPENHLSD-IRLQNPEKKFRVGMKVKARVLSTNPLKRQMRLTLKKTL 617

Query: 262 LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY------VTISDVAEEE 315
           +++ AP         YD+  +    + LG ++ +         Y      + +S+++E  
Sbjct: 618 VNSEAPTIKS-----YDEVSIGM--QTLGTIVKVQKNGAHVQFYGHLKGFLPVSEMSEAY 670

Query: 316 VRKLEKKYKEGSCVRVRIL-----GFRHL----EGLATGILKASAFEGLVFTHSDVKPGM 366
           +R   + ++ G  + V  L       R +    +  A G+ K +A +       D+K G 
Sbjct: 671 IRDPMEHFRAGQVLSVHALEVDPEARRFIVSCKDPSAFGLDKQTALK-------DLKLGD 723

Query: 367 VVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVK---PGKKFKVG---AELVFRV 419
           VV  KV         V+     +KA+ P+ H+++    K     K+   G   ++LV   
Sbjct: 724 VVSAKVTQKTEDQIFVELVDSQLKAILPVGHLTDKSSSKNQYAWKRISTGQTLSDLVVLE 783

Query: 420 LGVKSKRITVTHKKTLVKSKL--AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
                + IT+T K +LVK+     +L S+ +A    I  G++  I     FV+F   +  
Sbjct: 784 KNENRRAITLTQKPSLVKASQENKLLKSFHDAKVGAIVQGFVRNITVTAVFVQFAGNLNA 843

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
             PR  L  D   +P       + ++ +I+++IP  +RI
Sbjct: 844 LLPRGRLPADVQAQPDFGMRKFESIEVKIVATIPELKRI 882



 Score = 49.3 bits (116), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 113/269 (42%), Gaps = 17/269 (6%)

Query: 319  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 378
            LE  +  GS ++VR+      +     +   S       T + +K  MV+ GK+  V+  
Sbjct: 1065 LEANFPVGSAIKVRVTSV-DAKNKRLDLSARSPNASETITWASLKQNMVLPGKITKVNER 1123

Query: 379  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT-L 435
              +V+    V     LP M +        K+K G  +   ++ V +  KRI ++ + + +
Sbjct: 1124 QVLVKLSEAVSGPVHLPDMVDDYGTVDTLKYKKGDIVRVSIVDVDASNKRIRLSMRPSRI 1183

Query: 436  VKSKLAI----LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 491
            + S L +    +S  A+ +   I  G++  +   G FV     V GF   S L      E
Sbjct: 1184 MSSTLPVADKEISKIAQLSTGDIVRGFVKNVADKGVFVLLGGQVTGFVKISNLSDRFLKE 1243

Query: 492  PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-------DLVKLGSLVSGVVD 544
                + V Q+VK R+++   A+ ++ LS  +K + V ED       + +K G +V+GVV 
Sbjct: 1244 WKDSFQVDQLVKGRVIALDAATSQLELS--LKSSVVDEDYKPPVGYNDIKEGQIVTGVVR 1301

Query: 545  VVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
             V      + +       G      +AD+
Sbjct: 1302 KVEEFGAFIVIDNSANVSGLCHRTQMADN 1330



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 139/321 (43%), Gaps = 37/321 (11%)

Query: 150  VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 209
            V S+D   K + LS+     S+ +T     +  ++++PG     ++  + E  V++    
Sbjct: 1079 VTSVDAKNKRLDLSARSPNASETIT--WASLKQNMVLPG-----KITKVNERQVLVKLSE 1131

Query: 210  YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP- 268
              +G V +  + + + T +    Y +   V   I+ VD +++ + L++ P  + +   P 
Sbjct: 1132 AVSGPVHLPDMVDDYGTVDTLK-YKKGDIVRVSIVDVDASNKRIRLSMRPSRIMSSTLPV 1190

Query: 269  --------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 320
                    + +  GDI         D+G+ +LL    T      +V IS++++  +++ +
Sbjct: 1191 ADKEISKIAQLSTGDIVRGFVKNVADKGVFVLLGGQVT-----GFVKISNLSDRFLKEWK 1245

Query: 321  KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGMVVKGKVI 373
              ++    V+ R++        AT  L+ S    +V         ++D+K G +V G V 
Sbjct: 1246 DSFQVDQLVKGRVIAL----DAATSQLELSLKSSVVDEDYKPPVGYNDIKEGQIVTGVVR 1301

Query: 374  AVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITV 429
             V+ FGA  ++     V  LC    M++  +    K +K G ++  RVL V    +RI+ 
Sbjct: 1302 KVEEFGAFIVIDNSANVSGLCHRTQMADNAVKDATKLYKEGDKVKARVLEVDPTKRRISF 1361

Query: 430  THKKTLVKSKLAILSSYAEAT 450
              K +  + +   + S A A 
Sbjct: 1362 GLKPSFFEDEDTDMESDAGAA 1382



 Score = 41.2 bits (95), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 115/283 (40%), Gaps = 42/283 (14%)

Query: 1    MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
            M L G + +VNE+ +++ L   + G     D +D           D L    +  G +V 
Sbjct: 1111 MVLPGKITKVNERQVLVKLSEAVSGPVHLPDMVDDY------GTVDTLK---YKKGDIVR 1161

Query: 61   CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL---------SLETVQEGMVLTAYVKSIED 111
              ++ +D   K     +I LS+R S +              +  +  G ++  +VK++ D
Sbjct: 1162 VSIVDVDASNK-----RIRLSMRPSRIMSSTLPVADKEISKIAQLSTGDIVRGFVKNVAD 1216

Query: 112  HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL----LLQGVVRSIDRTRKVVYLSSDPD 167
             G  +  G    TGF+  +NL++    + K       L++G V ++D     + LS    
Sbjct: 1217 KGVFVLLG-GQVTGFVKISNLSDRFLKEWKDSFQVDQLVKGRVIALDAATSQLELS---- 1271

Query: 168  TVSKCVTKDLKG-ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL-QNTFP 225
              S  V +D K  +  + +  G +V+  V+ + E G  +        + ++  L   T  
Sbjct: 1272 LKSSVVDEDYKPPVGYNDIKEGQIVTGVVRKVEEFGAFI----VIDNSANVSGLCHRTQM 1327

Query: 226  TTNWKND----YNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 264
              N   D    Y +  KV AR+L VDPT R +   L P    +
Sbjct: 1328 ADNAVKDATKLYKEGDKVKARVLEVDPTKRRISFGLKPSFFED 1370


>gi|391333551|ref|XP_003741176.1| PREDICTED: uncharacterized protein LOC100897193 [Metaseiulus
            occidentalis]
          Length = 976

 Score =  191 bits (486), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 173/282 (61%), Gaps = 10/282 (3%)

Query: 1522 IRAAEERLLE----KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1577
            IR AE +L       + P+T +EF+RLV + P+   +W+KYMA  L   +V+KAR +A+R
Sbjct: 695  IRDAELKLTSPAGATNMPKTTEEFDRLVMADPSDGSLWVKYMAHHLQQLEVDKARQVAKR 754

Query: 1578 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1637
             L+ ++   E +KL++W+A  NLEN YG   +E++  VF+ AL+  DP KV+  +  +Y 
Sbjct: 755  GLKFVS-GNEADKLSLWLASLNLENMYGT--QESLDTVFKEALKQNDPIKVYSHMAKIYG 811

Query: 1638 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ--QEGVQAVVQRALLSLPRHKHI 1695
             T +N+L  E+   M+KKFK   +VW+     L      QE  Q +++R+  SL   +H+
Sbjct: 812  MTGKNELCREIYQIMLKKFKQHREVWIDFGSWLFDSGSLQEARQ-LMKRSFNSLTEKEHV 870

Query: 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1755
            + I + + LEF  G  D G+S+ + +L  YP+R DLW++Y+DQ ++L D D +R  F + 
Sbjct: 871  EVILKFSQLEFAKGERDFGKSLMDNLLLSYPRRLDLWNVYIDQLVKLNDFDAVRINFNKL 930

Query: 1756 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            +S  LP +KMK  FKK+L++E   G  E +E VKQK ++Y++
Sbjct: 931  LSAKLPVRKMKSAFKKWLDFETKHGTPESLEEVKQKVVDYID 972


>gi|322698144|gb|EFY89917.1| rRNA biogenesis protein RRP5, putative [Metarhizium acridum CQMa 102]
          Length = 1796

 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/282 (38%), Positives = 169/282 (59%), Gaps = 14/282 (4%)

Query: 1523 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1582
            R AE   L+   P+T  ++ERL+   P+SS +WI+YM F + ++++ KAR +AERA+++I
Sbjct: 1500 RTAE---LDAHGPQTSSDYERLLLGQPDSSKLWIQYMEFQMKVSELAKAREVAERAIKSI 1556

Query: 1583 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1642
            NIR+E EKL +WVAY  LE  YG   ++ V  VF+RA QY D  KVH  L  +Y ++E+ 
Sbjct: 1557 NIRKEEEKLKVWVAYLKLEVRYGT--KQTVEDVFKRACQYNDELKVHEELASIYIQSEKL 1614

Query: 1643 KLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFIS 1699
            K AD+L   M+KKF   +  VW      L   + Q +  +A++ RA   LP H     + 
Sbjct: 1615 KDADDLYESMLKKFGAKAPSVWTNYAYFLSVARNQPDRARALLPRATQRLPAHHSQNIVG 1674

Query: 1700 QTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE--IRLGDVDLIRGLFERA 1755
            Q A LEF+  NG  +RGR+MFEG+L+ +PKR DLWS  LD E  +   D   +R ++ER 
Sbjct: 1675 QFAALEFRSPNGEPERGRTMFEGLLATWPKRGDLWSWLLDLEEGVAGSDPTAVRDVYERR 1734

Query: 1756 ISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
              +  L P + K  F++++++E+ +  + + + V  KA ++ 
Sbjct: 1735 TRVKGLKPNQAKKWFRRWVKWEEKLDPKGK-DKVMAKAQDWA 1775



 Score =  176 bits (445), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 192/750 (25%), Positives = 333/750 (44%), Gaps = 71/750 (9%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE--------------DNLLP 50
           G +  +N  DL + LP  L G      A+   L N ++                 D  L 
Sbjct: 152 GQITRINNLDLEVALPNNLTGHVSVV-AVSEQLTNRVQEAAAEQDDEEDESSDETDVDLK 210

Query: 51  TIFHVGQLVSCIVLQLDD-----DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
           ++F VGQ +   V+   D     D K   KRKI LSLR +    GL  + +     + A 
Sbjct: 211 SMFVVGQYLRVYVVSTMDESAIGDGKNKTKRKIELSLRPTETNSGLGKDDIVANSTVMAS 270

Query: 106 VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYL 162
           V S+ED G ++  G+P    FLP   +  +S ID   ++ G +    V        VV L
Sbjct: 271 VVSVEDRGCVMDVGIPHLRAFLPHGEV--DSTIDQSRLQEGSVFLCQVTGKGSNGNVVQL 328

Query: 163 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 222
           S     +        +  +I+  +PG  V   + +I   G+    + +   T D+ H   
Sbjct: 329 SLQQKKLGSLKDVPTEATTINAFLPGTNVDVLITNIDRRGLAGKVIGHLDVTADLVHSGA 388

Query: 223 TFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL----------HNRAPPSH 270
               T+ +  Y    KV AR++   PT++   +G++L P++           +   P   
Sbjct: 389 GPNGTDLEATYKVGSKVKARVVCNFPTAKEPKLGISLLPHITSLTRKHPAKDNKTLPTEA 448

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGS 327
           + +  + ++  V RV+  +GL +DI    +    +V IS V + +V  L +    Y+ GS
Sbjct: 449 LPISSLVEKCTVRRVESEIGLFVDIGIAGLG--GFVHISRVKDGKVDALYESSGPYQLGS 506

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK----VIAVDSF-GAIV 382
             + R++G+  L+G      + S  +       DV  G V+  +    VI  +   G I+
Sbjct: 507 VHKGRVVGYSELDGQFHLSFEKSILDQQYIRMEDVPVGAVITCEIEKLVIKEEGVRGLIL 566

Query: 383 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKL 440
           +   G+       H+S+ ++  P KKF+ G ++  RVL      K+I  T KKTLV S  
Sbjct: 567 KIADGITGYVAERHLSDIKLQHPEKKFREGMKVKARVLSTNPFKKQIRFTLKKTLVNSDA 626

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
            ++ S+ +A   L   G I K++ +G  ++FY  ++GF P SE+      +P+  + +GQ
Sbjct: 627 PVIKSHEDAVVGLQVPGTIIKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQ 686

Query: 501 VVKCRIMSSIPASRRINLSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 553
           VV   I+   P  RR+ +S        + K T +     +K+G +V+  V   T + + V
Sbjct: 687 VVSVHILHVDPEQRRLIVSCKDPGAFGLDKQTALKN---LKVGEMVAAKVTQKTEDQIFV 743

Query: 554 YVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKY 609
            ++     K  +P  HL D    ++   +K V   G     L+V+D NE    ++L+ K 
Sbjct: 744 ELVDSQL-KAILPVGHLTDKSPSKNQFALKRV-SAGQTLSDLMVIDKNEKRRAIILTQKP 801

Query: 610 SLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQ-R 665
           SLI ++++  L S+      +++V  +V N+ +T  FV+F   L    P+S+   D Q +
Sbjct: 802 SLIKASKEGKLLSNFDDAKQDAIVPAFVRNVTQTAVFVQFAHNLYALLPKSRLPADAQSK 861

Query: 666 ADLSKTYYVGQSVRSNILDVNSETGRITLS 695
            D     Y  +S+   I+ V ++  RI ++
Sbjct: 862 PDFGMHKY--ESIEVKIISVINDLRRIMVA 889



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 162/360 (45%), Gaps = 33/360 (9%)

Query: 7    VAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLPTIFHVGQLVSCIVLQ 65
            V  V  + L + L   +RG   A +A D + L N++EAN        F VG  +   V  
Sbjct: 1032 VNNVTPQFLWVNLSPSVRGRVSAMEASDDLSLLNDLEAN--------FPVGSALKVKVKS 1083

Query: 66   LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG-LPSFT 124
            +D +K  +      LS R S   +G+   ++++ MVL   +  + +   ++    + S  
Sbjct: 1084 IDAEKNRLD-----LSARSSTDSQGVDWTSLKQNMVLPGKITKVNERQVMVKLSDIVSGP 1138

Query: 125  GFLPRNNLAEN----SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLK 178
              LP  ++A+N    + ++ K   +++  +  +D   K + LS  P  +  S     D +
Sbjct: 1139 VHLP--DMADNYDDINTLNYKKNQIVRVAIVEVDANNKRLRLSMRPSRILSSTLPVADKE 1196

Query: 179  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 238
               +  +  G +V   V+++ + G+ ++   + T  V I +L + F   +WK+ +   + 
Sbjct: 1197 IADLSQVAAGDVVRGFVKNVSDKGLFVALGGHITALVKIANLSDRF-LKDWKDHFQVDQL 1255

Query: 239  VNARILFVDPTSRAVGLTLNPYLL-HNRAPPSHVKVGDIYDQS----KVVRVDRGLGLLL 293
            V  R+L VD   + V ++L    +  +  PP  V   DI + S    KV +V+     +L
Sbjct: 1256 VKGRVLSVDSALKQVEMSLKASAVDEDYTPP--VSYNDIKEGSVVTGKVRKVEEFGAFIL 1313

Query: 294  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 353
               S  VS   +   S++A+E V+   K YKEG  V+  +L    ++   +  LK S F+
Sbjct: 1314 VDNSNNVSGLCHR--SEMADEAVKDATKLYKEGDAVKALVLEVDAVKRRISFGLKPSLFD 1371


>gi|340052139|emb|CCC46410.1| putative rRNA biogenesis protein [Trypanosoma vivax Y486]
          Length = 671

 Score =  190 bits (483), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 186/308 (60%), Gaps = 11/308 (3%)

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1562
            + K +     K ++ + +E   A ER ++   P + +EF RL+ +SPN+S++W+++M++ 
Sbjct: 332  NAKGSSQIGNKVRKRKLEEAIDAYERSMDTAVPSSEEEFRRLLLASPNNSYLWVQWMSYH 391

Query: 1563 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1622
            +S+   E+AR +AE+ALQTI +RE +E+LN+WVAY NLEN +G    E++  VF+R +++
Sbjct: 392  VSLQQYEEARLVAEKALQTIGLRETDERLNVWVAYMNLENMHGTA--ESLSSVFKRTVEH 449

Query: 1623 C-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQA 1680
              D   V+  L  +++ T ++     L   M+ KF+ + + W R    L+ Q +++ ++ 
Sbjct: 450  SLDKLVVYERLADIFKATHKSNQLLALCRTMVSKFRDAQRTWERLGVVLVDQNKRDQLKR 509

Query: 1681 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1740
            +++    +L R ++   +   A+ E++NG  + GR++ EG++   PK++D+WS+YLDQE+
Sbjct: 510  MMKDMGGALKRDEYALTVVHVAVYEYRNGSVENGRALLEGLIMRMPKKSDVWSVYLDQEL 569

Query: 1741 -------RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793
                       V L+R LFERA++ +   K M+ L  +++ +EK+ G    +E V+ +A 
Sbjct: 570  GLLARRAAEAAVPLVRSLFERAVATNFSAKVMQKLLTRFMAFEKAYGTPADVERVRARAR 629

Query: 1794 EYVESTLA 1801
             YVE+ ++
Sbjct: 630  SYVEAKIS 637


>gi|384487023|gb|EIE79203.1| hypothetical protein RO3G_03908 [Rhizopus delemar RA 99-880]
          Length = 861

 Score =  190 bits (482), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 154/540 (28%), Positives = 269/540 (49%), Gaps = 44/540 (8%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN------EIEANEDNLLPTIF 53
           L G ++ +NE +L + LP  L G   +   +DAL  I+        + E ++   L  +F
Sbjct: 115 LLGCISRINELELFVSLPHQLVGVIPITEVSDALSDIIQRIADEDEDEEESKMPKLNDLF 174

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
           HVGQ + C ++ L    +E  K+ I LSL+ + + + +    V  G+ L A VKS+EDHG
Sbjct: 175 HVGQWIRCKIISLPA-VEEKSKKPIELSLKPNTVNEDMVKVDVTPGVTLGASVKSVEDHG 233

Query: 114 YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
           Y+L  G+   TGFLP+          N   ++  G  ++ +V    +  + V+++ D   
Sbjct: 234 YVLDLGVKDLTGFLPKKEAKAYIEKYNRDEELAVGQYVECLVEK--KNNRTVHVTIDRSK 291

Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
           ++  V +D     I  ++PG  VS  V+++  NG+ L  +  ++ T+D  H+ +     +
Sbjct: 292 IASSVVEDPFS-RITSILPGQRVSGVVEAVQANGLALKMMGLYSSTIDASHIPSNM---D 347

Query: 229 WKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYLLHNRAP--PSHVK----VGDIY--- 277
            ++ +   +KV  R LF  ++   +A+G ++  + L    P   + VK    VGD++   
Sbjct: 348 IESSFKLGQKVVFRTLFTILNTEEKAIGGSILAHALDLDVPTLANGVKSDKFVGDVFPAG 407

Query: 278 ---DQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVR 330
              + +KV RV +  + + LD      S   YV IS +A+E V  L      Y+ G+  R
Sbjct: 408 SFLENTKVYRVSNSSVWVTLDGLD---SITGYVHISRLADERVPSLSATAGDYRIGTTHR 464

Query: 331 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 390
            R+L +  ++ +    L+ S         +D++ G +V+G V  +   G I++    + A
Sbjct: 465 ARVLSYNPVDAMLVLTLQPSVLAEKYLRVTDIEVGSMVEGVVEKIIPAGVILKLSKSISA 524

Query: 391 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAE 448
           L P  H+++ ++  P  KFKVG +   RVL V  +R  I +T KK+L+ S+  I  + A+
Sbjct: 525 LVPAAHLADVKLSHPEYKFKVGKKFQCRVLKVDGERQKIILTLKKSLINSEFPIFQNMAD 584

Query: 449 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 508
                I+HG IT I+ +GC + +YNGV  F P  E+         +++HVGQ VK  ++S
Sbjct: 585 CHVGDISHGVITAIKNNGCIIGYYNGVSAFVPGGEMTEAHVPNLGTVFHVGQTVKTTVLS 644



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 108/212 (50%), Gaps = 25/212 (11%)

Query: 496 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAV 551
           Y +G   + R++S  P    + L+  ++P+ ++E  L    +++GS+V GVV+ + P  V
Sbjct: 457 YRIGTTHRARVLSYNPVDAMLVLT--LQPSVLAEKYLRVTDIEVGSMVEGVVEKIIPAGV 514

Query: 552 VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-------QLLVLDNESSNL 603
           ++  ++K  S   +P  HLAD  L H         P Y+F        ++L +D E   +
Sbjct: 515 ILK-LSKSIS-ALVPAAHLADVKLSH---------PEYKFKVGKKFQCRVLKVDGERQKI 563

Query: 604 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 663
           +L+ K SLINS   +  + +  H   + HG +  I   GC + +   ++ F P  +  + 
Sbjct: 564 ILTLKKSLINSEFPIFQNMADCHVGDISHGVITAIKNNGCIIGYYNGVSAFVPGGEMTEA 623

Query: 664 QRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
              +L   ++VGQ+V++ +L V++E  ++ +S
Sbjct: 624 HVPNLGTVFHVGQTVKTTVLSVDAEKNKMIVS 655



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 4/164 (2%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            ++ D+    +V+G V+ +   G  + LS+ + A V  ++L+D  +  PE +F +GK    
Sbjct: 492  RVTDIEVGSMVEGVVEKIIPAGVILKLSKSISALVPAAHLADVKLSHPEYKFKVGKKFQC 551

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
            RVL V+   +++ +TLK   S   S+  I  N+++ HVGDI  G I  +++ G  I   N
Sbjct: 552  RVLKVDGERQKIILTLK--KSLINSEFPIFQNMADCHVGDISHGVITAIKNNGCIIGYYN 609

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
              +       E++E HV N+ T++  G+ VK  +L VD EK ++
Sbjct: 610  -GVSAFVPGGEMTEAHVPNLGTVFHVGQTVKTTVLSVDAEKNKM 652



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 49/81 (60%)

Query: 1236 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1295
            L +  D+   +  QGY+ N+T  G F+ L++ + A+V + NL+D +V+  +  + +G  V
Sbjct: 710  LSEFSDVRRGVCYQGYISNITDAGVFLQLNKTISARVKIGNLNDEFVKDWKSLYQVGNTV 769

Query: 1296 AGRVLSVEPLSKRVEVTLKTS 1316
              R++ ++  SKR+E +LK S
Sbjct: 770  QTRIIHIDRESKRLEASLKKS 790



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 86/185 (46%), Gaps = 22/185 (11%)

Query: 955  GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1014
            G +HI+ + D++   +     +++IG T  AR+++  N  D     +  L+++PS+L   
Sbjct: 435  GYVHISRLADERVPSLSATAGDYRIGTTHRARVLS-YNPVDA----MLVLTLQPSVL--- 486

Query: 1015 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1074
               ++      D+ +G  V G V K+     +L +S+ + A   +  +     +L   + 
Sbjct: 487  ---AEKYLRVTDIEVGSMVEGVVEKIIPAGVILKLSKSISA--LVPAAHLADVKLSHPEY 541

Query: 1075 RFHIGKAVTGHVLSINKEKKLLRLVLR--------PFQDGISDKTV-DISNDNMQTFIHE 1125
            +F +GK     VL ++ E++ + L L+        P    ++D  V DIS+  +    + 
Sbjct: 542  KFKVGKKFQCRVLKVDGERQKIILTLKKSLINSEFPIFQNMADCHVGDISHGVITAIKNN 601

Query: 1126 GDIVG 1130
            G I+G
Sbjct: 602  GCIIG 606


>gi|21355217|ref|NP_651245.1| CG5728 [Drosophila melanogaster]
 gi|16769580|gb|AAL29009.1| LD41803p [Drosophila melanogaster]
 gi|23172158|gb|AAF56280.2| CG5728 [Drosophila melanogaster]
          Length = 1430

 Score =  189 bits (481), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 187/321 (58%), Gaps = 12/321 (3%)

Query: 1480 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAP-RTP 1538
            DE  +++  +++ Q +  + K +  K    A+ KE    EQ +R  EER  +  A   T 
Sbjct: 1114 DEDEELN--VAETQKNAAKKKRLSAKEKAKAEIKE----EQRLREIEERNADPKARLETI 1167

Query: 1539 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1598
            D++ERLV + PN+S  W+KY+AF+LS  ++EKAR++A RA+ TI+ RE  E  N+W A  
Sbjct: 1168 DQYERLVIAQPNNSISWLKYIAFLLSNTEIEKARALARRAISTISFRETQELRNMWSALL 1227

Query: 1599 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658
            N+E  Y N  ++    V + AL   DP +++++++ + ++ ++      +L  ++ KFK 
Sbjct: 1228 NMELVYSNNFDD----VLKEALNCNDPLEIYISVVDILKKNKRKDRLSSVLTTVLNKFKT 1283

Query: 1659 SCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
              +VW    +      + + V  ++QRAL +LP  +HI  I   A L  K+   D  +++
Sbjct: 1284 ELRVWPVAAEAYFWLGKSDQVHNLLQRALRALPNQEHIPCIVSFAKLYAKHDNNDMAQTL 1343

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1777
             + +++ YPKR D+WS+Y+D  I+ G +D  R + ERA+   L P KM+ ++KKYL+ E+
Sbjct: 1344 LDDVVTSYPKRIDIWSVYVDMLIKAGLIDSARNVLERAVVQKLKPNKMQVIYKKYLQLEE 1403

Query: 1778 SVGEEERIEYVKQKAMEYVES 1798
            + G +  +  VKQ+A ++V++
Sbjct: 1404 NHGTDATVAKVKQQAEQWVKN 1424



 Score =  108 bits (270), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 158/664 (23%), Positives = 284/664 (42%), Gaps = 61/664 (9%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI--EANEDNLLPTIFHV 55
           M + GVV E+    L I LPG +     +A  +DA   +    +  + +E + L  +F +
Sbjct: 75  MLVMGVVKELTATALQIALPGRMFARTLVADISDAYTRVAKAAMSGDTSEYHDLTELFQL 134

Query: 56  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
           G++V    ++   +K + G+  + LSL+ + ++  L  +++++G + +  V    +HGY+
Sbjct: 135 GRIVYGKAIK--TEKLDTGRVSLLLSLKPADVHGNLHHKSIKKGFIFSGAVAEALEHGYV 192

Query: 116 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVVYLSSDPDTVSKCVT 174
           +  G+     F+P    A+   +     L ++ V     + T   V +  D     +   
Sbjct: 193 IESGVQGLQAFVPCEKPAQKLHVGQLAFLKVKTVHHDTHQSTCTCVQVEQD-----QLRI 247

Query: 175 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDY 233
           K     ++D ++PG +V  +V   L++G+  S +   F+  V+  HL N   T    + Y
Sbjct: 248 KSQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSAYVNEHHLANALDTL---DAY 304

Query: 234 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH----------VKVGDIYDQSKVV 283
             ++  NAR+L+V P ++ V LTLN  +    A              +KVG + +++KV+
Sbjct: 305 ELNEDYNARVLYVMPLTKLVYLTLNLDIKTGAAVAKDQDEEEQEVEPIKVGSVVEKAKVL 364

Query: 284 RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEG 341
           R+  G G++L +        +Y +I    +    K E   KY   +  +VRILG+  +E 
Sbjct: 365 RLGSG-GVVLLLNKKLKGIISYGSIRGNFKGNYDKDEVLSKYGRKTKHKVRILGYDVIES 423

Query: 342 LATGILKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFGAIVQFPGGVKALCPLPHMSE 399
           L       +     +F   D+  G +V            G  V+  G V  +     + +
Sbjct: 424 LYYCSDDPNVVNEKLFCLEDINAGDLVTAKIFKKDDKIKGWSVRI-GKVNGI-----LEQ 477

Query: 400 FEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHG 457
           F +  P  ++ VG  L  RVL V ++R    V+++   +   + IL+ YA A    +  G
Sbjct: 478 FYLA-PNVRYDVGQSLKCRVLEVNAERKICYVSNRAEYLGKGIKILTDYASAHVGNVYMG 536

Query: 458 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 517
            + + E     V+F NG++G   R  L      E SS +  GQ  K RI++      +I 
Sbjct: 537 TVVRCEDTYVLVKFGNGIKGVLHRQNLK-----ENSSFFE-GQTTKFRILTR--NKDQIT 588

Query: 518 LSFMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIAKGYSK-----GTIPTEHLA 571
           L+      ++ E   V++ + +   ++V +T  A        G  K     G IP   L+
Sbjct: 589 LTLPEDKFQLGEICPVEITNALDAGLEVKITFAAEDDEEDEDGNPKLEEFVGLIPLRLLS 648

Query: 572 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 631
           DHLE       V   G   D   ++ N  S  L    Y     + QL  D   +    ++
Sbjct: 649 DHLELLHAQMRVHPAGSYTDAACIMQNIFS--LRDVPY----FSGQLTKDWQSVQVGDII 702

Query: 632 HGYV 635
             YV
Sbjct: 703 RSYV 706


>gi|115504093|ref|XP_001218839.1| rRNA biogenesis protein [Trypanosoma brucei brucei strain 927/4
            GUTat10.1]
 gi|83642321|emb|CAJ16096.1| rRNA biogenesis protein, putative [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 679

 Score =  189 bits (481), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 180/307 (58%), Gaps = 12/307 (3%)

Query: 1504 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1563
            E  N +  K  K + E+ I A E R +E   P + +EF+RL+ +SPN+S++W+++M   +
Sbjct: 324  ENTNVNRSKIRKRKLEETIDAYE-RSMETAVPSSSEEFQRLLLASPNNSYLWVQWMTHHV 382

Query: 1564 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1623
            S+   E+AR +AE+AL TI +RE  E+LN+WVAY NLEN +G    E++  VF+RAL++ 
Sbjct: 383  SLQQFEEARLVAEKALTTIGVRETQERLNVWVAYMNLENLHGT--AESLASVFKRALRHA 440

Query: 1624 -DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAV 1681
             D   V+  L  ++  T +      L   M+ K +   +VW R    L+   +++ ++ V
Sbjct: 441  LDELVVYERLADIFSATRKFNQLLSLCRAMVSKNRKVPRVWERLGTVLIDHNKRDQLKRV 500

Query: 1682 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1741
            ++    +L R ++   +    + E++NG  + GR++FEG+L   PK++D+WS+YLDQE+ 
Sbjct: 501  LKDMSDALKRDEYALVVVHLGVHEYRNGSVENGRALFEGLLLRMPKKSDVWSVYLDQELG 560

Query: 1742 L-------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794
            L            +RGLFERA+S S   K M+ +  +++ +E++ G    +E VK +A  
Sbjct: 561  LLARRSEVASAVFVRGLFERAVSTSFSAKVMQQVLTRFMSFERAHGTPADVEKVKARARS 620

Query: 1795 YVESTLA 1801
            YVE+ ++
Sbjct: 621  YVEAKIS 627


>gi|341879709|gb|EGT35644.1| CBN-LET-716 protein [Caenorhabditis brenneri]
          Length = 1755

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/274 (37%), Positives = 169/274 (61%), Gaps = 11/274 (4%)

Query: 1529 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1588
            LLEK    + +E  R+VRS PNS+  WI+YM+  +  +D+  AR  AE  L+ I+  E  
Sbjct: 1476 LLEK----SEEEHSRMVRSDPNSAINWIQYMSLFVEKSDLAAARKTAEEGLKAIDQTESE 1531

Query: 1589 EKLNIWVAYFNLENEYGNPPEEAVVK-VFQRALQYCDPKKVHLALLGLYERTEQNKLADE 1647
            E + +W AY N+E  YG   E A V+ VF+RA Q  +   +H  L  +Y+  ++++ A  
Sbjct: 1532 ELIKLWTAYLNMEVAYG---ESATVQEVFKRACQNVNSYTIHKTLAKIYQNAQKHQEATR 1588

Query: 1648 LLYKMIKKFK-HSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRH-KHIKFISQTAIL 1704
            +L +M+KKF+ +  +VW    + L+ Q+ Q+  + ++ RAL S P+  +HI+ IS+ A L
Sbjct: 1589 ILEEMVKKFRANKLEVWTLLAEHLMTQKDQKAARDLLPRALKSAPKAAQHIQLISKFAQL 1648

Query: 1705 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1764
            EFK+G A+RGR++ EG+++ +PK+ DLW +Y D  ++   V+  R + ERA +L L   K
Sbjct: 1649 EFKHGDAERGRTLLEGLVTAHPKKMDLWLVYADAALKYLGVEHARKILERACNLDLTTHK 1708

Query: 1765 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            M+ L+KK+LE E   G+   ++ VK +A ++++S
Sbjct: 1709 MRPLYKKWLEMESKHGDAASVQLVKMRAEKFLQS 1742



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 165/395 (41%), Gaps = 29/395 (7%)

Query: 44  NEDNL-LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 102
           NE+ + +   F +GQ+V   V+   +DK   GK K   S   + L K LS   +  G+V+
Sbjct: 110 NEEKIEMKDAFQLGQMVPFRVISKKNDK---GKAKA--SCNPARLNKHLSPNMLAAGLVI 164

Query: 103 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 162
              V S+E+ G IL  GL   TGF+ +   A+     +K G+ L  +VR +  T +VV +
Sbjct: 165 HTSVVSLEEKGAILDVGLDQITGFIEK---AQFPAGGLKEGIPL--IVRILSSTSRVVKV 219

Query: 163 SS--DPDTVSKCVTKDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVDIFH 219
           +S  + D ++    + L+   ++ L+PG ++        +  GV++       G +    
Sbjct: 220 TSFVEQDNLNMASCEKLQ---LNHLMPGTILECEPTGDAVTAGVIVGIGNGLKGILP--- 273

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVG 274
            +   P    +N     K + A ++F    S+ + L  +P +     +  R     + +G
Sbjct: 274 -RRNLPPRLRENPEKLGKAIRAVVMFCQQNSKILVLNAHPDIVAVSRIEKRTTFEGISIG 332

Query: 275 DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRI 333
           D    + +  +     +   +P           IS     E    +  KY+ G+    R+
Sbjct: 333 DKVTCTVIDTIPTKSIVYFTLPPIDGKKSLVTAISSRGLLENPDAVASKYEIGAEKLCRV 392

Query: 334 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 393
            G+R+ +   T   +       + T+ D K G ++  +V  +   G        VKA  P
Sbjct: 393 TGYRYADRTITVSTRKDILNQKITTYKDAKCGDILDARVHHIAKSGVYFMVCNFVKAFAP 452

Query: 394 LPHMSEFEIVKPGKK--FKVGAELVFRVLGVKSKR 426
           +  +S+  +     K  F++G E+  RV  +  +R
Sbjct: 453 MSLLSDKPLTSQKIKSLFRMGTEVKCRVWQICEQR 487


>gi|302891949|ref|XP_003044856.1| hypothetical protein NECHADRAFT_43434 [Nectria haematococca mpVI
            77-13-4]
 gi|256725781|gb|EEU39143.1| hypothetical protein NECHADRAFT_43434 [Nectria haematococca mpVI
            77-13-4]
          Length = 1773

 Score =  189 bits (479), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/265 (39%), Positives = 164/265 (61%), Gaps = 13/265 (4%)

Query: 1523 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1582
            R AE   L+ + P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR +AERA+++I
Sbjct: 1477 RTAE---LDANGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELSKAREVAERAIKSI 1533

Query: 1583 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1642
            NIREE EKLN+WVAY NLE  YG+  +  V +VF+RA QY + ++V+  L  +Y ++E+ 
Sbjct: 1534 NIREETEKLNVWVAYLNLEVAYGS--KSTVEEVFKRACQYNNEQEVYERLASIYIQSEKL 1591

Query: 1643 KLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFIS 1699
            K ADEL   M+KKF   +  VWL     L   + +  +A  ++ RA   L        +S
Sbjct: 1592 KDADELFEAMVKKFGAKAPNVWLNYAHFLHVTRNDAARARSLLPRATQQLDSRHSQNLVS 1651

Query: 1700 QTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD--LIRGLFERA 1755
            + A LEF+  NG  +RGR+MFEG+L+ +PK+ DLW   LD E  L + D   +R +FER 
Sbjct: 1652 RFAALEFRSPNGEPERGRTMFEGLLAAWPKKGDLWGQLLDLESGLAEADPTAVRDVFERR 1711

Query: 1756 ISL-SLPPKKMKFLFKKYLEYEKSV 1779
              +  L P++ +  F+++  +E+ +
Sbjct: 1712 TRVKGLKPQQAEKWFRRWATWEEKL 1736



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 175/649 (26%), Positives = 294/649 (45%), Gaps = 44/649 (6%)

Query: 49  LPTIFHVGQLVSC-IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 107
           L TIF +GQ V   +V  +D+     GKR+I LSLR S    GL  + V     + A + 
Sbjct: 200 LETIFSIGQYVRAYVVSTVDESGTGKGKRRIELSLRPSEANTGLEGDDVVINTTVAASIV 259

Query: 108 SIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSS 164
           S++D G+++  G+ +   FL R+ +  +S  D   ++PG +    V S     K+  LS 
Sbjct: 260 SVQDRGFVMDTGISNLGAFLSRSEI--DSSFDEQRLQPGAVFLCQVVSKGANGKIAQLSL 317

Query: 165 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
               +           +I+  +PG +    V +    G     + +   T D+ H     
Sbjct: 318 QQKKLGNPKNVPADATTINTFLPGTIADVLVSNTDRRGFAGKIMGHLDVTADLIHSGVGP 377

Query: 225 PTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLH------------NRAPPSH 270
              +  + Y    +V ARI+   P ++   +G++L P++               + P + 
Sbjct: 378 AGVSLDSTYKIGSRVKARIICNFPAAKEPKLGISLLPHITSLEQKRPTKTTDAKKLPTTV 437

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGS 327
           + +  + ++  V  V+  +GL +DI    +S   +V IS V + +V  L +    YK GS
Sbjct: 438 LPISSLVEKCTVRHVEGEIGLFVDIGIPGLS--GFVHISRVKDGKVEALYESSGPYKVGS 495

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IV 382
             + R++G+  ++GL     + S  E       DV  G V+ G+V  + VD  G    I+
Sbjct: 496 EHKGRVVGYNQVDGLFQISFEKSVLEQQYLRLEDVPIGAVITGEVERVLVDEKGVSGLIL 555

Query: 383 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKL 440
           +   G+  L P  H+S+ ++  P KKF+ G ++  RVL       ++ +T KKTLV S+ 
Sbjct: 556 KIAEGITGLVPEQHLSDIKLQNPEKKFRPGMKIKARVLSTNLVKNQMRLTLKKTLVNSEA 615

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
            I+ SY +A+  +   G I KI+  G  ++F+  V+GF P SE+      +P   + VGQ
Sbjct: 616 PIIKSYEDASVGMQVPGTIVKIQSSGAQIQFFGPVRGFLPISEMSEAYIKDPHEHFRVGQ 675

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-----VKLGSLVSGVVDVVTPNAVVVYV 555
           VV   ++   P S+++ +S    P+    D       +++G LVSG V   T + + V  
Sbjct: 676 VVSVHVLDVEPESQKLIVS-CKDPSAFGLDKQNALKKLQVGVLVSGKVSQKTEDQIFVE- 733

Query: 556 IAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLI 612
           +     K  +P   L D            I  G     L+VL+ NE    L+L+ K SLI
Sbjct: 734 LDDAQLKAILPVGQLTDKSASKNQYAWKRISAGQTISNLMVLEKNEKRRVLILTQKPSLI 793

Query: 613 NSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
            +++   L           VV G+V NI  T  FV+F G +    P+S+
Sbjct: 794 KASEDRTLLKTFEDAKEGKVVAGFVQNITLTAVFVQFAGGVRALLPKSR 842



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 144/309 (46%), Gaps = 37/309 (11%)

Query: 1126 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            G ++ G + ++L    GV GL+++I   + G V    L +I + +P     E +F P   
Sbjct: 533  GAVITGEVERVLVDEKGVSGLILKIAEGITGLVPEQHLSDIKLQNP-----EKKFRP--- 584

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
               G  +K +VL  +        + L+L+ +L              V++    ++  ED 
Sbjct: 585  ---GMKIKARVLSTNLVKN---QMRLTLKKTL--------------VNSEAPIIKSYEDA 624

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
            S  M V G +  + S G  I     +   + +S +S+ Y++ P + F +G++V+  VL V
Sbjct: 625  SVGMQVPGTIVKIQSSGAQIQFFGPVRGFLPISEMSEAYIKDPHEHFRVGQVVSVHVLDV 684

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
            EP S+++ V+ K  D       + N L  L VG +V G++ +     +F+ +++  L  +
Sbjct: 685  EPESQKLIVSCK--DPSAFGLDKQNALKKLQVGVLVSGKVSQKTEDQIFVELDDAQLKAI 742

Query: 1363 CHVSELSEDHVDNIETIYR---AGEKV-KVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
              V +L++      +  ++   AG+ +  + +L+ ++++R + L  K S  K   D   +
Sbjct: 743  LPVGQLTDKSASKNQYAWKRISAGQTISNLMVLEKNEKRRVLILTQKPSLIKASEDRTLL 802

Query: 1419 SSEEESDEA 1427
             + E++ E 
Sbjct: 803  KTFEDAKEG 811



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 95/458 (20%), Positives = 196/458 (42%), Gaps = 68/458 (14%)

Query: 929  VGSLVQAEITEIKPLE-----LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 983
            +G+++  E+  +   E     L LK   G  G +    ++D K   ++N    F+ G  +
Sbjct: 532  IGAVITGEVERVLVDEKGVSGLILKIAEGITGLVPEQHLSDIK---LQNPEKKFRPGMKI 588

Query: 984  TARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1043
             AR+++     ++ K+ +  L++K +++  SE  + ++    D S+G +V G + K+ + 
Sbjct: 589  KARVLST----NLVKNQM-RLTLKKTLVN-SE--APIIKSYEDASVGMQVPGTIVKIQSS 640

Query: 1044 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE-KKLLRLVLRP 1102
             A +     ++   F+  S    + +++    F +G+ V+ HVL +  E +KL+     P
Sbjct: 641  GAQIQFFGPVRG--FLPISEMSEAYIKDPHEHFRVGQVVSVHVLDVEPESQKLIVSCKDP 698

Query: 1103 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1162
               G+  +       N    +  G +V G++S+          +    ++  +   +LK 
Sbjct: 699  SAFGLDKQ-------NALKKLQVGVLVSGKVSQ----------KTEDQIFVELDDAQLKA 741

Query: 1163 IC----VSDPLSGYDEGQFDPLSGYDEGQFV-KCKVLEISRTVRGTFHVELSLRSSLDGM 1217
            I     ++D  +  ++  +  +S    GQ +    VLE +   R      L+ + SL   
Sbjct: 742  ILPVGQLTDKSASKNQYAWKRISA---GQTISNLMVLEKNEKRRVLI---LTQKPSLIKA 795

Query: 1218 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1277
            S   +             L+  ED     +V G+V+N+T    F+  +  + A +  S L
Sbjct: 796  SEDRT------------LLKTFEDAKEGKVVAGFVQNITLTAVFVQFAGGVRALLPKSRL 843

Query: 1278 SDGYVESPEKEFPIGKL--VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS----- 1330
                 E P  +F + KL  +  R++SV P  +R+ V    SD     + E  +++     
Sbjct: 844  PADVQEQP--DFGMHKLQSIEVRIVSVIPDHRRIVVAPADSDEDDVVKKEKTDVASAPSD 901

Query: 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1368
            NL  G ++  +I  V+   L + +   ++ G   VS++
Sbjct: 902  NLEFGTVIKAKITSVKDTQLNVQLAGNDVQGRIDVSQV 939


>gi|195504842|ref|XP_002099252.1| GE10809 [Drosophila yakuba]
 gi|194185353|gb|EDW98964.1| GE10809 [Drosophila yakuba]
          Length = 1478

 Score =  189 bits (479), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/319 (34%), Positives = 183/319 (57%), Gaps = 12/319 (3%)

Query: 1484 DMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEE--REQEIRAAEERLLEKDAP-RTPDE 1540
            D D  +++ +   + AK    K    AK+K K E   EQ +R  EER  +  A   T D+
Sbjct: 1162 DDDEELNEAETQKNAAK----KKRLSAKEKAKAEVKEEQRLREIEERNADPKARLETIDQ 1217

Query: 1541 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1600
            +ERLV + PN+S  W+KY+AF+LS  ++EKAR +A RA+ TI+ RE  E  N+W A  N+
Sbjct: 1218 YERLVIAQPNNSISWLKYIAFLLSNTEIEKARDLARRAISTISFRETQELRNMWSALLNM 1277

Query: 1601 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1660
            E  Y N  ++    V + AL   DP +++++++ + +R ++      +L  ++ KFK   
Sbjct: 1278 ELVYSNNFDD----VLKEALNCNDPLEIYISVVDILKRNKKKDRLSTVLTTILNKFKTEL 1333

Query: 1661 KVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE 1719
            +VW    +      + + V  ++QRAL  LP  +HI  I   A L  K+   D  +++ +
Sbjct: 1334 RVWPVAAEAYFWLGKSDQVHNLLQRALRGLPNQEHIPCIVSFAKLYAKHDNNDMAQTLLD 1393

Query: 1720 GILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV 1779
             +++ YPKR D+WS+Y+D  I+ G +D  R + ERA+   L P KM+ ++KKYL+ E++ 
Sbjct: 1394 DVVTSYPKRIDIWSVYVDMLIKAGLIDSARNVLERAVLQKLKPNKMQVIYKKYLQLEENH 1453

Query: 1780 GEEERIEYVKQKAMEYVES 1798
            G +  +  VKQ+A ++V++
Sbjct: 1454 GTDATVAKVKQQAEQWVKN 1472



 Score =  103 bits (258), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 143/603 (23%), Positives = 261/603 (43%), Gaps = 53/603 (8%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEI--EANEDNLLPTIFHV 55
           M + GVV E     L I LPG +      AD   A   +    +  + +E + L  +F  
Sbjct: 75  MLVMGVVKETTATALQISLPGRMFARTLVADISEAYTRVAKAAMGGDTSEYHDLSELFQA 134

Query: 56  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
           G++V    ++ +  K   G+  + LSL+ + ++  L  +++++G + +  V  I++HGY+
Sbjct: 135 GRIVYGKAIKTE--KLGTGRISLLLSLKPADVHGNLHHKSIKKGFIFSGAVAEIQEHGYV 192

Query: 116 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 175
           +  G+     F+P     E     +  G L    V+S+         S       +   K
Sbjct: 193 IESGVQGLQAFVP----CEEPAQKLHVGQLAFLKVKSVHHDTHQSTCSCVQVEQDQLRIK 248

Query: 176 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDYN 234
                ++D ++PG +V  +V   L++G+  S +   F+  ++  HL N   T    + Y 
Sbjct: 249 SQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSAYINEHHLTNALDTL---DAYE 305

Query: 235 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH----------VKVGDIYDQSKVVR 284
            ++  NAR+L+V P ++ V LTLN  +    A              +KVG + +++KV+R
Sbjct: 306 LNEDYNARVLYVMPLTKLVYLTLNLDIKSGVAAEKDQDEEEQEEEPLKVGSVVEKAKVLR 365

Query: 285 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEGL 342
           +  G G++L +        +Y +I    +    K E   KY   +  +VRILG+  +E L
Sbjct: 366 LGSG-GVVLLLNKKLKGIISYGSIRANFKGNYDKDEVLSKYGRKTKHKVRILGYDIIESL 424

Query: 343 ATGILKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
                  +     ++   D+  G +V            G  V+  G V  +     + +F
Sbjct: 425 YYCSDDPNVVSEKLYCLEDINAGDLVTAKIFKKDDKIKGWSVRI-GKVNGI-----LEQF 478

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGW 458
            +  P  ++ VG  L  RVL V ++R    V+++   +   + +L+ YA A    +  G 
Sbjct: 479 YLA-PNVRYDVGQSLKCRVLEVNAERKICYVSNRSEYLGKGIKLLTDYASAHVGNVYVGT 537

Query: 459 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 518
           + + E +   V+F NG++G   R  L      E +S +  GQ  K RI++      +I L
Sbjct: 538 VVRCEDNYVLVKFGNGIKGVLHRQNLK-----ENNSFFE-GQTTKFRILTR--NKDQITL 589

Query: 519 SFMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIAKGYSK-----GTIPTEHLAD 572
           +      ++ E   V++ + +   ++V +T  A        G  K     G IP   L+D
Sbjct: 590 TLPEDKFQLGEICPVEITNALDAGLEVKITYAADDDEEDEDGNPKLEEFMGLIPLRLLSD 649

Query: 573 HLE 575
           HLE
Sbjct: 650 HLE 652


>gi|268572137|ref|XP_002641244.1| Hypothetical protein CBG09112 [Caenorhabditis briggsae]
          Length = 1717

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/266 (37%), Positives = 163/266 (61%), Gaps = 5/266 (1%)

Query: 1536 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1595
            ++ +E  RLVRS PNS+  WI+YM+  +  +D++ AR  AE AL  IN  E  E L +W 
Sbjct: 1444 KSEEEHSRLVRSDPNSAINWIEYMSLFVEKSDLKAARKTAEEALSAINPTESEELLKMWT 1503

Query: 1596 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1655
            AY N+E  YG+     V +VF+RA +  +   ++  L  +Y++  ++  A  +L +M+ K
Sbjct: 1504 AYLNMEVAYGD--STTVDEVFKRACKNANSYTIYRTLAKIYQKFNKHAEAKHILEQMVSK 1561

Query: 1656 FK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVAD 1712
            F+ +  +VW    + L+ Q +Q+G + ++ RAL S P+  +HI+ IS+ A LEFK G A+
Sbjct: 1562 FRANKLEVWTLLAEHLMNQKEQKGARDLLPRALKSAPKAQQHIQLISKFAQLEFKLGDAE 1621

Query: 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
            RGR++ EG+++ +PK+TDLW +Y D  ++   ++  R + ERA +  L   KM+ L+KK+
Sbjct: 1622 RGRTLLEGLVTAHPKKTDLWLVYADAALKHLGIEHARKILERACNRELSVHKMRPLYKKW 1681

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVES 1798
            LE E   G+   I+ VK KA  +++S
Sbjct: 1682 LEMESKHGDAASIQLVKSKAESFLQS 1707



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 191/456 (41%), Gaps = 46/456 (10%)

Query: 5   GVVAEVNEKDLVICLPGG----LRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
           GVVAE+ +  +++   G     +     +A+  D   +N+IE      +   F +GQ+V 
Sbjct: 70  GVVAELFDDGVLLHTAGTHTVKIHAAEVSANFTDLFNENKIE------IKDAFQIGQMVP 123

Query: 61  CIVL--QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF 118
             V+  +  +DK   G+ K   S   + L K LS   +  G+V+   V S+E+ G IL  
Sbjct: 124 FRVISKKSGNDK---GRSKA--SCNPARLNKHLSPNMLVAGLVIHTAVTSLEEKGAILDV 178

Query: 119 GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS----DPDTVSKCVT 174
           GL   TGF+ ++         ++ G  L  VVR +  T +VV ++S    D   +S C  
Sbjct: 179 GLDQMTGFIEKSQF---PAAGLREGQPL--VVRVLSTTSRVVKVTSFVEQDNLNMSSC-- 231

Query: 175 KDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 233
              + + ++ L+PG ++        +  GV+++      G +     +   P    +N  
Sbjct: 232 ---EKLQLNHLMPGTILECEPTGDAVTAGVIVNIGNGLKGILP----RRNLPPRLRENPE 284

Query: 234 NQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRG 288
              K + A ++F    S+ + L  +P +     +  R     +++GD    + V  +   
Sbjct: 285 KLGKAIRAVVMFCQQNSKVLVLNAHPDIVAVSRVEKRTSFEGIQIGDKVQCTVVDVIPTK 344

Query: 289 LGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 347
             +   +P T         +S     E+   +  +Y+ G+    R+ GFR+ +   T   
Sbjct: 345 SIVYFTLPPTDGKKSLVTAVSSRGLLEKPDSVATEYEVGTEKFCRVTGFRYADRAITVST 404

Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE--FEIVKP 405
           +       +  + D K G V+  +V  V   G        V+A  P+  +S+    + K 
Sbjct: 405 RKDILNQKITKYQDAKCGDVLDARVHHVAKNGVYFSVCNFVQAFAPMSLLSDKSLNLQKL 464

Query: 406 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 439
             KF+VG E   RV  +  + K + VT ++ ++  K
Sbjct: 465 KAKFQVGTETKCRVWQICDQRKNLIVTCREQIIALK 500


>gi|194909767|ref|XP_001982005.1| GG12355 [Drosophila erecta]
 gi|190656643|gb|EDV53875.1| GG12355 [Drosophila erecta]
          Length = 1433

 Score =  187 bits (474), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 176/303 (58%), Gaps = 8/303 (2%)

Query: 1500 KTIDEKNNRHAKKKEKEE--REQEIRAAEERLLEKDAP-RTPDEFERLVRSSPNSSFVWI 1556
            K   +K    AK+K K E   EQ +R  EER  +  A   T D++ERLV + PN+S  W+
Sbjct: 1129 KNAAKKKRLSAKEKAKAEVKEEQRLREIEERNADPKARLETIDQYERLVIAQPNNSISWL 1188

Query: 1557 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1616
            KY+AF+LS  ++EKAR +A RA+ TI+ RE  E  N+W A  N+E  Y +  ++    V 
Sbjct: 1189 KYIAFLLSNTEIEKARDLARRAISTISFRETQELRNMWSALLNMELVYSDNFDD----VL 1244

Query: 1617 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQ 1675
            + AL   DP +++++++ + +R ++      +L  ++ KFK   +VW    +      + 
Sbjct: 1245 KEALNCNDPLEIYISVVDILKRNKKKDRLSSVLTTILNKFKTELRVWPVAAEAYFWLGKS 1304

Query: 1676 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1735
            + V  ++QRAL  LP  +HI  I   A L  K+   D  +++ + +++ YPKR D+WS+Y
Sbjct: 1305 DQVHNLLQRALRGLPNQEHIPCIVSFAKLYAKHDNNDMAQTLLDDVVTSYPKRIDIWSVY 1364

Query: 1736 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
            +D  I+ G +D  R + ERA+   L P KM+ ++KKYL+ E++ G +  +  VKQ+A ++
Sbjct: 1365 VDMLIKAGLIDSARNVLERAVLQKLKPNKMQVIYKKYLQLEENHGTDATVAKVKQQAEQW 1424

Query: 1796 VES 1798
            V++
Sbjct: 1425 VKN 1427



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 139/602 (23%), Positives = 262/602 (43%), Gaps = 51/602 (8%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEI--EANEDNLLPTIFHV 55
           M + GVV E     L I LPG +      AD   A   +    +  + +E + L  +F V
Sbjct: 75  MLVMGVVKEATATALQIALPGRMFARTMVADISEAYTRVAKAAMSGDTSEYHDLTELFQV 134

Query: 56  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
           G++V    ++ +      G+  + LSL+ + ++  L  +++++G + +  V  I++HGY+
Sbjct: 135 GRIVYGKAIKTE--MLGTGRVSLLLSLKPADVHGSLHHKSIKKGFIFSGAVAEIQEHGYV 192

Query: 116 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVVYLSSDPDTVSKCVT 174
           +  G+     F+P    A+   +     L ++ V     + T   V +  D     +   
Sbjct: 193 IESGVQGLQAFVPCEEPAQKLHVGQLAFLKVKNVHHDTHQSTCTCVQVEQD-----QLRI 247

Query: 175 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDY 233
           K     ++D ++PG +V  +V   L++G+  S +   F+  ++  HL N   T    + Y
Sbjct: 248 KSQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSAYINEHHLTNALDTL---DAY 304

Query: 234 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH----------VKVGDIYDQSKVV 283
             ++  NAR+L+V P ++ V LTLN  +    A              +KVG + +++KV+
Sbjct: 305 ELNEDYNARVLYVMPLTKLVYLTLNLDMKTGVAAEKDQNEEEQEEEPLKVGTVVEKAKVL 364

Query: 284 RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEG 341
           R+  G G++L +        +Y +I    +    K E   KY   +  +VRILG+  +E 
Sbjct: 365 RLGSG-GVVLLLNKKLKGIISYGSIRANFKGNYDKDEVLSKYGRKTKHKVRILGYDIIES 423

Query: 342 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 401
           L       +     ++   D+  G +V  K+   D      +  G    +  +  + E  
Sbjct: 424 LYYCSDDPNVVSEKLYCLEDITAGDLVTAKIFKRDD-----KIKGWSVKIGKVNGILEQF 478

Query: 402 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 459
            + P  ++ VG  L  RVL V ++R    V+++   +   +  L+  A A    +  G +
Sbjct: 479 YLAPNVRYDVGQSLKCRVLEVNAERKICYVSNRSEYLGKGIKFLTDIASAHVGNVYMGTV 538

Query: 460 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
            + E +   V+F NG++G   R  L      + S+ +  GQ  K RI++      +I L+
Sbjct: 539 VRCEDNYVLVKFGNGIKGVLHRQNL------KESNSFFEGQTAKFRILTR--NKDQITLT 590

Query: 520 FMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIAKGYSK-----GTIPTEHLADH 573
                 ++ E   V++ + +   ++V +T  A        G  K     G IP   L+DH
Sbjct: 591 LPEDKFQLGEICPVEITNALDAGLEVKITYAADDDEEDEDGNPKLEEFMGLIPLRLLSDH 650

Query: 574 LE 575
           +E
Sbjct: 651 ME 652


>gi|392571061|gb|EIW64233.1| hypothetical protein TRAVEDRAFT_138819 [Trametes versicolor
           FP-101664 SS1]
          Length = 1486

 Score =  186 bits (473), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 204/767 (26%), Positives = 343/767 (44%), Gaps = 89/767 (11%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEA-NEDN--------L 48
           MK+ G V  V    L++ LP  L     + + +  L  IL++E +A N D+         
Sbjct: 127 MKILGQVVSVEPLALIVSLPNQLFAHVPITQISSQLTHILESEDDAENSDDEEEEASASR 186

Query: 49  LPTIFHV---GQLVSCIV-------------LQLDDDKKEIGKRKIWLSLRLSLLYKGLS 92
           +P +F +   GQ V  +V             L    D+ +   R++ LSL    + +G++
Sbjct: 187 VPDLFEIFQPGQYVRAVVSAVHQPGSTDATGLGRARDEVQKASRRVELSLVPEKVNEGVA 246

Query: 93  LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVK--PGLLLQG 148
              +  G  L+A VKS+EDHGYIL  G+P  +GFL     A+   SG + K   G LL  
Sbjct: 247 KADLLAGFALSASVKSVEDHGYILDLGIPEVSGFLSFKAAAQKGPSGAEKKFHVGRLLDV 306

Query: 149 VVRSIDRTRKVVYLSSD---PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 205
           +V  +    +   +S D   P T        +K +     VPG +V + V ++  +G++L
Sbjct: 307 IVTKLSDNGRTCNVSVDSYAPKTAPLTEVTSVKSV-----VPGALVQSLVTAVQPDGLIL 361

Query: 206 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDP-TSRAVGLTLNPYLLH 263
             L +F GTVD FHL+    + + +++Y   +KV AR+L+ + P T     L+L  +++ 
Sbjct: 362 QVLGFFDGTVDQFHLR----SGDTEDNYKIGQKVKARVLYDISPSTPPRFALSLADHVVK 417

Query: 264 ---------------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 308
                            A P    VG   D  KV R++   GL +++ S       +V I
Sbjct: 418 YSAKSAASGSAATDLREAYP----VGTTLDAVKVTRIESERGLTVEVGS---GVAGFVHI 470

Query: 309 SDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 365
           S V++E V  L      +K G+  R R+ G+  L+GL    LK S         +DV+ G
Sbjct: 471 SQVSDEHVPTLSTTSGAWKVGTVHRARVTGYFPLDGLLQLSLKPSILAQKFLQVADVQVG 530

Query: 366 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS- 424
            ++KG V  +      V   G V  +    H ++  +  P K+FK G  +  RVL V S 
Sbjct: 531 ELIKGTVKKLTDTALFVSISGNVDGVIWPNHYADIVLKHPQKRFKPGGSIKCRVLVVDSE 590

Query: 425 -KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 483
            KRI +T KKTLV+S L I+S  ++    ++TH  I KI +    V FYN ++   P  E
Sbjct: 591 RKRIALTAKKTLVESTLPIVSQLSDVRVGVVTHAVIFKISEKSLQVEFYNNLKASVPARE 650

Query: 484 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP----TRVSEDDLVKLGSLV 539
                    S+ + +G+ V+ R+++    + RI  S         + +++   V +G +V
Sbjct: 651 ASETTLSSLSAAFAIGKPVQVRLIAVDAETGRITASIRQAAPNFKSAITDISGVDIGDIV 710

Query: 540 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLLVL-- 596
            GVV  +  +  VV  +        +   +LA+  E +   ++S +K G +   L+V   
Sbjct: 711 EGVVSDIRKDKAVV-TLQPTQVTALLSLNNLANRREVSVAQLRSALKVGEKLQDLVVTSR 769

Query: 597 DNESSNLLLSAK---YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
           + E   +L+++K      I     L  D   +    +V G V      G  ++    + G
Sbjct: 770 NPEKGFVLVASKPKEKEAILQKNHLSLDT--VQAGQLVGGRVLRHNRYGALIKLTNSIMG 827

Query: 654 FAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQS 699
               + AVD   +   K +  V   +++ +L V+ E  ++ LS + S
Sbjct: 828 VLHPTDAVDDYES--GKPFPGVDSVLKAVVLSVDKERRQLMLSTRMS 872



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 205/804 (25%), Positives = 353/804 (43%), Gaps = 103/804 (12%)

Query: 627  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DV 685
            P ++V   V  +   G  ++ LG   G   +     G   D    Y +GQ V++ +L D+
Sbjct: 343  PGALVQSLVTAVQPDGLILQVLGFFDGTVDQFHLRSG---DTEDNYKIGQKVKARVLYDI 399

Query: 686  NSETG-RITLSLKQSCCS--------STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            +  T  R  LSL               + A+ ++E + +   +  ++ ++        VE
Sbjct: 400  SPSTPPRFALSLADHVVKYSAKSAASGSAATDLREAYPVGTTLDAVKVTRIESERGLTVE 459

Query: 737  GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKA 796
               +GS + G VH S      VS +EH       T    +GA  + G+V +A +      
Sbjct: 460  ---VGSGVAGFVHISQ-----VS-DEH-----VPTLSTTSGAW-KVGTVHRARVTGYFPL 504

Query: 797  ERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 855
            + L+ LSLK ++   +F +                  D+ V + +   V+ + +  L +S
Sbjct: 505  DGLLQLSLKPSILAQKFLQV----------------ADVQVGELIKGTVKKLTDTALFVS 548

Query: 856  LPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 915
            +      + + +       K PQK+F  G S+   V+ + S     R  + L A      
Sbjct: 549  ISGNVDGVIWPNHYADIVLKHPQKRFKPGGSIKCRVLVVDSE----RKRIALTAKKTLVE 604

Query: 916  SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 975
            S+     + S   VG +  A I +I    L+++F       +   E ++     + +L +
Sbjct: 605  STLPIVSQLSDVRVGVVTHAVIFKISEKSLQVEFYNNLKASVPAREASE---TTLSSLSA 661

Query: 976  NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1035
             F IG+ V  R+IA   +            I  S+   +      + +   V IG  V G
Sbjct: 662  AFAIGKPVQVRLIAVDAETG---------RITASIRQAAPNFKSAITDISGVDIGDIVEG 712

Query: 1036 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR--FHIGKAVTGHVL-SINKE 1092
             V  +  + A++T+       L  L++     E+   Q R    +G+ +   V+ S N E
Sbjct: 713  VVSDIRKDKAVVTLQPTQVTALLSLNNLANRREVSVAQLRSALKVGEKLQDLVVTSRNPE 772

Query: 1093 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1152
            K  + +  +P +     +   +S D +Q     G +VGGR+  +     G ++++   + 
Sbjct: 773  KGFVLVASKPKEKEAILQKNHLSLDTVQA----GQLVGGRV--LRHNRYGALIKLTNSIM 826

Query: 1153 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1212
            G +H T        D +  Y+ G+  P  G D    +K  VL + +  R           
Sbjct: 827  GVLHPT--------DAVDDYESGK--PFPGVD--SVLKAVVLSVDKERRQL--------- 865

Query: 1213 SLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1270
                M ST  S L    D P   + +  +  L     V+G++K++   G F+ L R +DA
Sbjct: 866  ----MLSTRMSRLFPSQDKPIVDREITSLSQLKVGDKVRGFIKSIAEHGLFVTLGRDIDA 921

Query: 1271 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1330
            +V +  L D +V+  +  F + +LV GR+LSV    K++E++ ++ D +   QS++ +LS
Sbjct: 922  RVQIKELFDDFVKDWKSRFTVNQLVNGRILSVNVEKKQLELSFRSGDLKRDGQSQL-SLS 980

Query: 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI----YRAGEKV 1386
            +L  G  + G++K+VE YGLFI IE + L GLCH SELS D+ D   T+    +R G+KV
Sbjct: 981  DLSEGQKIDGRVKKVEDYGLFIEIEGSKLSGLCHKSELS-DNKDGDVTLALRSFRVGDKV 1039

Query: 1387 KVKILKVDKEKRRISLGMKSSYFK 1410
            K  IL VD EKRR+S G+K SYF+
Sbjct: 1040 KAVILSVDLEKRRVSFGLKPSYFE 1063



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 100/472 (21%), Positives = 190/472 (40%), Gaps = 44/472 (9%)

Query: 78  IWLSLRLSLL-YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-- 134
           + LSL+ S+L  K L +  VQ G ++   VK + D    +     +  G +  N+ A+  
Sbjct: 508 LQLSLKPSILAQKFLQVADVQVGELIKGTVKKLTDTALFVSIS-GNVDGVIWPNHYADIV 566

Query: 135 --NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC--VTKDLKGISIDLLVPGMM 190
             +     KPG  ++  V  +D  RK + L++    V     +   L  + +     G++
Sbjct: 567 LKHPQKRFKPGGSIKCRVLVVDSERKRIALTAKKTLVESTLPIVSQLSDVRV-----GVV 621

Query: 191 VSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 250
               +  I E  + + F      +V       T   ++    +   K V  R++ VD  +
Sbjct: 622 THAVIFKISEKSLQVEFYNNLKASVPAREASET-TLSSLSAAFAIGKPVQVRLIAVDAET 680

Query: 251 RAVGLTLN---PYLLHNRAPPSHVKVGDIYDQS-KVVRVDRGLGLLLDIPSTPVSTPAYV 306
             +  ++    P         S V +GDI +     +R D+ +  L      P    A +
Sbjct: 681 GRITASIRQAAPNFKSAITDISGVDIGDIVEGVVSDIRKDKAVVTL-----QPTQVTALL 735

Query: 307 TISDVA---EEEVRKLEKKYKEGSCVRVRILGFRHLE-GLATGILKASAFEGLV----FT 358
           +++++A   E  V +L    K G  ++  ++  R+ E G      K    E ++     +
Sbjct: 736 SLNNLANRREVSVAQLRSALKVGEKLQDLVVTSRNPEKGFVLVASKPKEKEAILQKNHLS 795

Query: 359 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA-LCPLPHMSEFEIVKP---------GKK 408
              V+ G +V G+V+  + +GA+++    +   L P   + ++E  KP            
Sbjct: 796 LDTVQAGQLVGGRVLRHNRYGALIKLTNSIMGVLHPTDAVDDYESGKPFPGVDSVLKAVV 855

Query: 409 FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 468
             V  E    +L  +  R+  +  K +V  ++  LS   +  D++   G+I  I +HG F
Sbjct: 856 LSVDKERRQLMLSTRMSRLFPSQDKPIVDREITSLSQL-KVGDKV--RGFIKSIAEHGLF 912

Query: 469 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           V     +       EL  D   +  S + V Q+V  RI+S     +++ LSF
Sbjct: 913 VTLGRDIDARVQIKELFDDFVKDWKSRFTVNQLVNGRILSVNVEKKQLELSF 964


>gi|357616535|gb|EHJ70248.1| programmed cell death protein 11 [Danaus plexippus]
          Length = 1195

 Score =  186 bits (471), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/268 (35%), Positives = 163/268 (60%), Gaps = 7/268 (2%)

Query: 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1593
            +PR+ ++FER + + P+ S +WI YMAF L   ++EKAR++A +AL TIN REE EKLN+
Sbjct: 927  SPRSSEQFERALLAQPDCSQLWIAYMAFHLQATEIEKARAVARKALNTINFREEGEKLNV 986

Query: 1594 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1653
            W+A  NLE+ +G   +E   K  + ALQ  D   +H  LL +   T + +    L+  M+
Sbjct: 987  WLALLNLEHRFGT--KETQQKTLEDALQMNDTYSIHSKLLDILVETSKQQELTALVELMM 1044

Query: 1654 KKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            +K+K + + ++   +   K    E  + V+QR ++ L + +H+  + + A++E   GV D
Sbjct: 1045 RKYK-TLESYVACGEACYKSGMVEKARHVMQRGIVVLEKKEHVSMVVKFAVMERARGVPD 1103

Query: 1713 ---RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1769
               R  ++ E +L+ YP+R D+  +Y D   + GDV  +R L ER  +  +P +KMK L+
Sbjct: 1104 GRERCEALLEQMLATYPQRVDVIGVYCDMLCKEGDVQRVRQLMERMTAQKMPARKMKVLY 1163

Query: 1770 KKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            KK++E E+ +G+EE +E V+Q A+++++
Sbjct: 1164 KKWIEVEQKIGDEEHVELVRQNALKFLD 1191



 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 144/562 (25%), Positives = 259/562 (46%), Gaps = 66/562 (11%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANEDNL--LPTIFHVGQ 57
           L G V    E  +++ LP  + G+  A   +DA + IL+  +    D +  LP +F +GQ
Sbjct: 81  LLGRVRRALETKILVSLPCRMSGVVMACHISDAFNNILEAYVNDKVDQVRELPQMFRLGQ 140

Query: 58  LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE----TVQEGMVLTAYVKSIEDHG 113
            V+  VL+  D+           SL L+++ + ++ +     + +G ++ A V SIEDHG
Sbjct: 141 YVAVKVLEASDN-----------SLTLTMMPQDINSDRKATDLHKGALIQAAVTSIEDHG 189

Query: 114 YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 173
           Y++  G+P+   FL ++    NS +++  G+L    ++S+     VV LSS+   + +  
Sbjct: 190 YVMDIGIPNTRAFLAKD--TANSDMELDIGMLTWVTIKSLSADSNVVTLSSELGALQRSF 247

Query: 174 TKDLKGISIDLLVPGMMVSTRVQSILENGV---MLSFLTYFTGTVDIFHLQNTFPTTNWK 230
            ++  G+    + PG  V   V   L+NG+   +L+    +     I  ++   P     
Sbjct: 248 QRN-PGV----IYPGTAVDFTVHKALDNGIEGHILNNQLAYIQRHQIDTVKGKKPALG-- 300

Query: 231 NDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV---GDIYDQSKVVRVDR 287
                 +K+ AR+L+  P  +   LT+      ++   +  ++   GD+ +++KV++   
Sbjct: 301 ------QKIRARLLYSVPPQQTPFLTMREIFDSSKTNLNEEQIHQDGDVIEEAKVLK-SW 353

Query: 288 GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 347
           G  + L +        +     D  + +   L K Y  GS  RVR+L +     L+  + 
Sbjct: 354 GRTVFLRLSDRSTGFLSLRRGHDFNDHD--DLAKSYPIGSTHRVRVLCY----NLSDYVY 407

Query: 348 KASAFEGLV----FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 403
             S    L+    F  S +  G +V G V  V      V     +    P  HM+E  + 
Sbjct: 408 SVSDDPALLRQKYFNISQLSVGELVSGTVTEVADQHLRVAV-DRISGYVPRAHMTETGVF 466

Query: 404 ----KP-----GKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDR 452
               KP      KK+KVG E+  RVL V   +  + +T K +L+   L +L  Y+EA   
Sbjct: 467 IDPKKPRNSNVSKKYKVGQEVQARVLVVDETKNSVVLTLKPSLLAEDLPLLMDYSEAHVG 526

Query: 453 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 512
            +  G I+ I KH   V F+N V  + P   +G  PG + +  +H GQ+VKC IMS  P 
Sbjct: 527 KMYTGVISHI-KHYLLVSFFNNVVAYVPSRLVGAQPG-DLADAFHTGQIVKCTIMSVKPE 584

Query: 513 SRRINLSFMMKPTRVSEDDLVK 534
           +++++ S +  P + +++++ K
Sbjct: 585 AKKMSGSLVDAPFQDADNEVKK 606



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 29/194 (14%)

Query: 925  SSYDVGSLVQAEITEIKPLELRLKFG--IGFHGRIHITEVN---DDKSNVVENLFSNFKI 979
            S   VG LV   +TE+    LR+      G+  R H+TE     D K     N+   +K+
Sbjct: 424  SQLSVGELVSGTVTEVADQHLRVAVDRISGYVPRAHMTETGVFIDPKKPRNSNVSKKYKV 483

Query: 980  GQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK 1039
            GQ V AR++      + K S +  L++KPS+L        LL +  +  +G+  TG +  
Sbjct: 484  GQEVQARVLVVD---ETKNSVV--LTLKPSLLAED---LPLLMDYSEAHVGKMYTGVISH 535

Query: 1040 VDNEWALLTISRHLKAQLFILDSAYEPSEL-----QEFQRRFHIGKAVTGHVLSINKEKK 1094
                     I  +L    F    AY PS L      +    FH G+ V   ++S+  E K
Sbjct: 536  ---------IKHYLLVSFFNNVVAYVPSRLVGAQPGDLADAFHTGQIVKCTIMSVKPEAK 586

Query: 1095 LL--RLVLRPFQDG 1106
             +   LV  PFQD 
Sbjct: 587  KMSGSLVDAPFQDA 600



 Score = 48.1 bits (113), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 13/170 (7%)

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFD 591
           +G LVSG V  V    + V V       G +P  H+ +    ++      S +   Y+  
Sbjct: 428 VGELVSGTVTEVADQHLRVAV---DRISGYVPRAHMTETGVFIDPKKPRNSNVSKKYKVG 484

Query: 592 Q-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
           Q     +LV+D   ++++L+ K SL+     L  D S  H   +  G + +I +    V 
Sbjct: 485 QEVQARVLVVDETKNSVVLTLKPSLLAEDLPLLMDYSEAHVGKMYTGVISHI-KHYLLVS 543

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
           F   +  + P S+ V  Q  DL+  ++ GQ V+  I+ V  E  +++ SL
Sbjct: 544 FFNNVVAYVP-SRLVGAQPGDLADAFHTGQIVKCTIMSVKPEAKKMSGSL 592


>gi|66807509|ref|XP_637477.1| hypothetical protein DDB_G0286941 [Dictyostelium discoideum AX4]
 gi|60465898|gb|EAL63968.1| hypothetical protein DDB_G0286941 [Dictyostelium discoideum AX4]
          Length = 804

 Score =  184 bits (468), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 147/555 (26%), Positives = 259/555 (46%), Gaps = 60/555 (10%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLAR---AADALDPILDNEIEANEDNLLPT------ 51
           M +     +V E D+ I LP GL+G  +    +D+    +   ++  ++N   T      
Sbjct: 166 MVVLATFEQVTEMDITISLPFGLKGYVKFNEISDSFTEWMKETLKREDENEKSTNFRKMK 225

Query: 52  --------IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 103
                   +F+ GQ++ C ++ L D     G   +  +LR  L+  G S++T  E M + 
Sbjct: 226 IISDQVRKMFYKGQMLKCAIVGLTDHHTIEG---LHCTLRPELVNVGSSIDTFSEDMTIH 282

Query: 104 AYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKP---GLLLQGVVRSIDRT 156
             ++SI+D GYI+ FG   + GFL  +N      + S  D      G  ++ +++SID++
Sbjct: 283 GCIESIQDKGYIVSFGSKDYNGFLEFSNTCYYYPDQSSDDQNQLYIGQPIESLIQSIDKS 342

Query: 157 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
            K   L+     VS+   K+ + I+++ +  GM+V T+V  +L NG+ L FL +F G + 
Sbjct: 343 TKTFKLTISHPLVSRSTIKNSETITMESIKAGMLVETKVLRVLSNGLHLGFLDFFAGDIF 402

Query: 217 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLT-------LNPYLLHNRAPPS 269
           I H QN   T      Y +++ V ARILFVD   + +GL+         PY      P  
Sbjct: 403 ILHSQNPIET------YKENQGVKARILFVDQVHKRIGLSTLGHVLGFKPYPFGTTKPGQ 456

Query: 270 HVKVGDIYDQSKVVRVDRGLGLLLDIPST-----PVSTP----AYVTISDVAE--EEVRK 318
           +V+ G +     + R++  L +++   ST     P+  P     Y+ I ++     ++ K
Sbjct: 457 YVESGKL----TIERIE-PLEMIVTTESTVVQSNPMKAPLLLRGYIHIEELESGVNDLTK 511

Query: 319 LEKKYKEGSCV--RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 376
              ++K+   +  R R+    HL+G+ T   +    E   ++++D+  GMVV+G +  V 
Sbjct: 512 ASNQFKKTEPLEKRCRVKHLDHLDGMVTYTARTRELEKKFYSYNDLSCGMVVQGVIRYVR 571

Query: 377 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKT 434
           +    V+    +  +    HM++  I  P + FKVGA +  R++ V+   KR+ +T KK+
Sbjct: 572 ADSLEVELATSIHGVVARHHMADTNITDPLEFFKVGATVKVRIINVEPDKKRLQLTLKKS 631

Query: 435 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 494
           L+ S+  I++         I+HG ITK  +   FV FYN   G      L          
Sbjct: 632 LIYSEYPIITDKNTTPIGTISHGIITKTTRFLVFVSFYNNSFGVVEAQNLSNSKIESVQK 691

Query: 495 MYHVGQVVKCRIMSS 509
            + VG+ V  + + S
Sbjct: 692 QFPVGRTVLAKTLFS 706



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            DLS  M+VQG ++ V +    + L+  +   V   +++D  +  P + F +G  V  R++
Sbjct: 556  DLSCGMVVQGVIRYVRADSLEVELATSIHGVVARHHMADTNITDPLEFFKVGATVKVRII 615

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +VEP  KR+++TLK    ++   SE   I + +   +G I  G I +   + +F++  N 
Sbjct: 616  NVEPDKKRLQLTLK----KSLIYSEYPIITDKNTTPIGTISHGIITKTTRFLVFVSFYN- 670

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404
            N  G+     LS   +++++  +  G  V  K L  +  K +  L +
Sbjct: 671  NSFGVVEAQNLSNSKIESVQKQFPVGRTVLAKTLFSESSKSQPGLPL 717


>gi|183232667|ref|XP_654947.2| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169801940|gb|EAL49568.2| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
            HM-1:IMSS]
          Length = 1710

 Score =  184 bits (467), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1539 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1598
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 1451 DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 1510

Query: 1599 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 1511 QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 1568

Query: 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 1569 SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 1628

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1777
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 1629 FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 1688

Query: 1778 SVGEEERIEYVKQKAMEYVES 1798
              G+E R E+V+  A  +V +
Sbjct: 1689 KYGDESRQEHVRDIAKSFVST 1709



 Score =  119 bits (298), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 248/1170 (21%), Positives = 479/1170 (40%), Gaps = 171/1170 (14%)

Query: 282  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 341
            + ++D  +G+   I  T      +++   + +E    + K++K GS  + R++ +   +G
Sbjct: 318  ISKIDENVGI---IGETEDKEEVFLSKKQIKDESCSDIPKEFKIGSTHKGRVMYYSAFDG 374

Query: 342  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 401
                  + S       +  D+K GM+++G +  V+  G IV+    +   C   +  +  
Sbjct: 375  YCGITTRESILSDKYQSIFDIKSGMIIEGTIKEVNEKGIIVKIGEKIYGFCDKINSGDIP 434

Query: 402  IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 459
            I      FK   +  FRVL V ++   I +THK+TL+K+   I+++  E     IT G +
Sbjct: 435  IEDLQSVFKKEQKSKFRVLTVNNRNNSIYLTHKRTLMKATTPIITTIEETELNTITFGTV 494

Query: 460  TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 518
            T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 495  TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKVRIISFDKQLLLCSL 550

Query: 519  SFMMK---PTRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLAD 572
            +   +   P +  +     ++G +  G+V V     +++  I  G  +    +P   + D
Sbjct: 551  NLFPEENVPEKYEDVSRHFEVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVID 609

Query: 573  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 632
              E   + K +I+ G    + L+L N+   ++++ K SLI+  +++    S        +
Sbjct: 610  GDEGQDIPK-MIRNGTILKECLLLKNQMGQMVITTKKSLISLRKKIGKFNSKEEMTVGKY 668

Query: 633  -GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
             GYV  I    CF+ F   +T    R    D     + +   VGQ+V   +        +
Sbjct: 669  IGYVSKIKGKYCFISFYNGVTILCYRMNVSD-TNLPIEEVLEVGQTVYGYL------NKK 721

Query: 692  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 751
               SLK+S   S    FM           +L+  +    E K+      GS ++ ++ + 
Sbjct: 722  GIFSLKESSVGSIKEEFM-----------LLRVERD--VEPKY------GSQLKIEIKDI 762

Query: 752  NDFGVVVSFEEHSDVYGFITHHQLAGATVE--SGSVIQAAILDVAKAERLVDLSLKTVFI 809
              +G++   +E  +   FI    + G   E   G+ ++  ++ V K  +++D   + +  
Sbjct: 763  KPYGIIGKNKEREETI-FIPKTGIEGDIKEMNKGNTMKCIVIGVDKERKMIDCIQEKMIT 821

Query: 810  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 869
             +  E N   + +                     V + KE Y V  L E N  I + +  
Sbjct: 822  KQHIENNKIYKGK---------------------VLLNKEEYCV-CLVEGN--IVFVNKI 857

Query: 870  DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK---RAKKKSS 926
              N  K+  K+ +  + +I   M    +   G             T +SK    + K ++
Sbjct: 858  RMNGGKYTVKEEV--EIIIGKEMEGYQNIYEG-------------TINSKPIVYSIKNNT 902

Query: 927  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 986
             ++G  ++  ++        L  G G  GR+H  ++N  K   +      + IG  V   
Sbjct: 903  INIGEKIEGVVSYTNESISYLNLGKGITGRLH--KINSTKKIEIGEKIECYIIGIQVKGE 960

Query: 987  IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1046
            II +  K    +  + ELS+K       E G+     E  +  G+ + G + +   +  +
Sbjct: 961  IIKEKGKEIEGRIEIVELSMK-------EEGNM----EEKIQEGEEIEGIISREMKDGYI 1009

Query: 1047 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK--AVTGHVLSINKEKKLLRLVLRPFQ 1104
            ++ +  LK +L  ++      E+   ++ +++G    V G+    +KE   L        
Sbjct: 1010 ISFNSILKGKLNYIEIGDNIEEININKKEYNVGDKIKVKGYY---SKENIYL-------- 1058

Query: 1105 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1164
              I DK  +I          EG+I+ G +    +    + V I  +  G +H+ ++ N  
Sbjct: 1059 --IKDKKEEIK---------EGEIIVGEVIGNNTKELKIKVLIKGNRIGYIHYCDISN-- 1105

Query: 1165 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVL----EISRTVRGTFHVELSLRSSLDGMSST 1220
            V +P          P      G+++   VL    EI  ++R  +     L+ + D +   
Sbjct: 1106 VFNPF---------PRDYLQNGKYINMYVLSNKPEILCSMRKEY-----LKEAYDEIFPP 1151

Query: 1221 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY-VKNVTSKGCFIMLSRKLDAKVLLSNLSD 1279
                + T + T        + +    I+ GY +K+   +G  +M+SR +   V    L D
Sbjct: 1152 LIGGVQTRIVTK-------DTIKEGEILTGYIIKSSEEEGVDVMVSRDVTIHVAPGELLD 1204

Query: 1280 G---YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1336
                + +   + F I +LV   ++  E L    E TLK S           ++    V  
Sbjct: 1205 NTSYHGKDFSRIFCIQRLVKVSIIDKEGL----EGTLKQSVIYPGIIKYFKDIKENIVTK 1260

Query: 1337 IVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--DNIETIYRAGEKVKVKILKVD 1394
             VI  I    S GLF+   N+N+ GLCH S++ +  +    +E  ++  + +  K++ +D
Sbjct: 1261 CVIVNIT---SEGLFLRFFNSNIRGLCHCSKIEDKKLTKKEMEKRFKIKDVIMAKVVHID 1317

Query: 1395 KEKRRISLGMKSSYFKNDADNLQMSSEEES 1424
            K+K R++  +K      D   ++M  EEE+
Sbjct: 1318 KKKHRVNFSIKPE----DVGEVEMKDEEET 1343


>gi|396476776|ref|XP_003840117.1| similar to rRNA biogenesis protein RRP5 [Leptosphaeria maculans JN3]
 gi|312216688|emb|CBX96638.1| similar to rRNA biogenesis protein RRP5 [Leptosphaeria maculans JN3]
          Length = 1787

 Score =  184 bits (467), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 169/283 (59%), Gaps = 13/283 (4%)

Query: 1526 EERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1583
            E+R  + DA  P++  ++ERL+   PNS+ +W++YM F   + ++EKAR IA RAL TIN
Sbjct: 1499 EDRTGDLDAFGPQSIADYERLLLGQPNSAELWVRYMVFQRELGEIEKARQIARRALATIN 1558

Query: 1584 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1643
             REE EKL++W A  +LEN++    ++A+ ++F+ A Q+ D ++VH  ++ +Y  + + +
Sbjct: 1559 PREEKEKLDVWTALLHLENDFAT--DDAMEQIFKEACQHNDSREVHERMIKIYISSGKLE 1616

Query: 1644 LADELLYKMIKK--FKHSCKVWLRRVQRLLK----QQQEGVQAVVQRALLSLPRHKHIKF 1697
             AD L   M+K   F    + WL     L+           +A++QRA  S+P  +H   
Sbjct: 1617 KADSLYQLMVKNKSFTPDPQFWLSYAAFLMDVLSPPSPTRARALLQRATQSVPSREHRYL 1676

Query: 1698 ISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1755
              + A LEFK  NG A+RGR++FEG++S YPK+ D+W +YL  E+  G  + +R LFER 
Sbjct: 1677 TQKFAALEFKSPNGDAERGRTIFEGLVSTYPKKGDVWDMYLSLEMSHGSSENVRNLFER- 1735

Query: 1756 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            ++ +   K+ + +F K+  +E  VG ++ +E VK    ++ E+
Sbjct: 1736 MAKTTKKKRAQTVFAKWAVWEAGVGNKKGVERVKALEEQWREA 1778



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 198/747 (26%), Positives = 326/747 (43%), Gaps = 61/747 (8%)

Query: 5   GVVAEVNEKDLVICLPGGLRG---LARAADALDPIL--------DNEIEANEDNL----L 49
           G+V EV ++D+V+ LP  L G   L   +D L+  L        D E  +++ N     L
Sbjct: 155 GLVTEVTQQDIVLALPNNLVGYVPLTAISDKLNERLEQLMKDDTDKEDGSDDGNFEDVDL 214

Query: 50  PTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
             +F VGQ +   +   +++     KR + LS+   L+ KGL+   +    ++ A V S 
Sbjct: 215 QDMFSVGQYLRACITSTNEETARARKR-LELSIDPKLVNKGLTKRKLPVNSMMQASVVSN 273

Query: 110 EDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 166
           EDHG ++  GL      GFLP+  L        V+ G +   +    +   ++V LS+D 
Sbjct: 274 EDHGLVMDLGLGDTKVKGFLPKGELGPKVQHAKVQEGAVFMCLATGTNPDGRIVKLSADH 333

Query: 167 DTVSKCVTKD--LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
                    +  +   +ID+ +PG  V   +     + +    L     T D +H   T 
Sbjct: 334 AKAGNLAKGNTLIDAPTIDVFLPGTAVDVLITDSTSSTITGKILGLIDCTADAYHSGATE 393

Query: 225 PTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL----------HNRAPPSHV- 271
              +    Y    KV  RILF  P S  R VG++L  +++            R PP  + 
Sbjct: 394 RGADVSQKYKLGSKVKGRILFTCPDSEPRKVGVSLLDHVVSLSTRMSGKPKERKPPLELL 453

Query: 272 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSC 328
            V  I + +KVV+V   LG   D+    V    +  IS +A+E+V  L +    +K GS 
Sbjct: 454 PVSTIIENAKVVKVAPALGAFFDLGVRDVV--GFSHISRLADEKVEFLSEDSGAFKLGST 511

Query: 329 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQ 383
            + RI+G+  ++GL    L+    +       D+K G VVKGKV  +  D  GA   +V 
Sbjct: 512 HKARIIGYNDMDGLFQLSLEQKILDQPFLRIEDIKAGQVVKGKVHKLIADKKGATAVLVH 571

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLA 441
              G+  L    H+++  +  P +KF+ G  +  RVL  +  R  I +T KKTLV S + 
Sbjct: 572 LADGITGLVSELHLADVRLQHPERKFREGVPVKARVLYTEPARHQIHLTLKKTLVNSDIN 631

Query: 442 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 501
             + Y    +     G I  + ++G  VRFY  V+ + P +E+      + +  +  GQV
Sbjct: 632 PWTDYNMIKEGAAGPGIIANVRRNGATVRFYGTVKAWLPVAEMSEAFIEDATKHFSAGQV 691

Query: 502 VKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVI 556
           V  R +S  P  R++ +S    P  +  +     + +  G++V G V   T  AV +  +
Sbjct: 692 VNVRAISVNPEERQLLVS-CKDPAAIDTNKEAAFNALNPGAIVKGTVLEKTDEAVTLD-L 749

Query: 557 AKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLI 612
             G  KG +   HL D  E   +  MK  I+ G   + L+VL    +S  + +S K +L 
Sbjct: 750 GNGV-KGLLRIGHLTDGSEKKDISTMKK-IRVGGVLEDLVVLAKHVKSKTVTVSNKPTLR 807

Query: 613 NSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 670
             AQ  +L      +     VHG+V  I+    F+     ++G   +S+  +   +  + 
Sbjct: 808 KDAQASKLAISVEDLQAGETVHGFVRGILPDKVFIELGNGISGPVFKSQLTEEMLSAPNF 867

Query: 671 TYYVGQSVRSNILDVNSETGRITLSLK 697
                QSV   +  V+   G   LS+K
Sbjct: 868 GLRKDQSVTVRVSHVDPAKGFFWLSMK 894



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 156/374 (41%), Gaps = 47/374 (12%)

Query: 180 ISIDLLVPGMMVSTRVQSILEN-----GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
           + I+ +  G +V  +V  ++ +      V++      TG V   HL +     + +  + 
Sbjct: 540 LRIEDIKAGQVVKGKVHKLIADKKGATAVLVHLADGITGLVSELHLADVR-LQHPERKFR 598

Query: 235 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 294
           +   V AR+L+ +P    + LTL   L+++   P         D + +     G G++ +
Sbjct: 599 EGVPVKARVLYTEPARHQIHLTLKKTLVNSDINP-------WTDYNMIKEGAAGPGIIAN 651

Query: 295 IPSTPVST------PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHL----- 339
           +     +        A++ +++++E  +    K +  G  V VR +      R L     
Sbjct: 652 VRRNGATVRFYGTVKAWLPVAEMSEAFIEDATKHFSAGQVVNVRAISVNPEERQLLVSCK 711

Query: 340 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-- 397
           +  A    K +AF  L        PG +VKG V+        +    GVK L  + H+  
Sbjct: 712 DPAAIDTNKEAAFNAL-------NPGAIVKGTVLEKTDEAVTLDLGNGVKGLLRIGHLTD 764

Query: 398 -SEFEIVKPGKKFKVGA---ELVFRVLGVKSKRITVTHKKTLVK----SKLAILSSYAEA 449
            SE + +   KK +VG    +LV     VKSK +TV++K TL K    SKLAI     +A
Sbjct: 765 GSEKKDISTMKKIRVGGVLEDLVVLAKHVKSKTVTVSNKPTLRKDAQASKLAISVEDLQA 824

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            + +  HG++  I     F+   NG+ G   +S+L  +    P+      Q V  R+   
Sbjct: 825 GETV--HGFVRGILPDKVFIELGNGISGPVFKSQLTEEMLSAPNFGLRKDQSVTVRVSHV 882

Query: 510 IPASRRINLSFMMK 523
            PA     LS  ++
Sbjct: 883 DPAKGFFWLSMKLE 896



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 133/317 (41%), Gaps = 24/317 (7%)

Query: 314  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
            E++  +E+ +  GS ++V +       G    +  AS   G   T  D+K G V+  +V 
Sbjct: 1075 EQLSSVEENFPVGSALKVTVKTVDVAAG-RLDLTAASTVTGKALTLQDLKVGYVLPARVT 1133

Query: 374  AVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVK--SKRITVT 430
             +     +VQ    + A   L  ++ +++  KP  +FKVG  L   ++ +   +K+++++
Sbjct: 1134 KLHDASIVVQINETIAAPIFLEQLADDYDKAKPS-EFKVGDILRVCIIDIDLPNKKLSLS 1192

Query: 431  HKKTLVKSKLAILSSYAEATDRL------ITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
             + + V S    +    E  DR       +  G+I  +  +G +VR    V+ +   S L
Sbjct: 1193 ARPSRVLSSTLPIKD-PEIKDRAQLKVNDVVRGFIKHVADNGVYVRLGPHVEAYVRVSHL 1251

Query: 485  GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSEDDLVKLG 536
                  +  S +HV Q+V  +++S+ P  R   LS           +P   S    +K G
Sbjct: 1252 SDAYIKDWKSAFHVDQLVTGKVISNKPDQRNPQLSLKTSIIQADYSEPIEFSN---LKAG 1308

Query: 537  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLV 595
             +V+  V  V    V + V       G      LAD       +K + K G     ++L 
Sbjct: 1309 QIVTATVRHVEDFGVFLVVANSNNVSGLCHVSQLADTPVDKEKVKEMYKKGDAVKAKVLK 1368

Query: 596  LDNESSNLLLSAKYSLI 612
            +D+ +  +  + KYS +
Sbjct: 1369 VDSNTRKISFTLKYSQV 1385



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 115/512 (22%), Positives = 214/512 (41%), Gaps = 73/512 (14%)

Query: 935  AEITEIKP-----LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
            A++ ++ P      +L ++  +GF    HI+ + D+K   +      FK+G T  ARII 
Sbjct: 462  AKVVKVAPALGAFFDLGVRDVVGFS---HISRLADEKVEFLSEDSGAFKLGSTHKARIIG 518

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK-VDNEWALLT 1048
             +   DM    L++LS++  +L       +      D+  GQ V G V+K + ++     
Sbjct: 519  YN---DMDG--LFQLSLEQKIL------DQPFLRIEDIKAGQVVKGKVHKLIADKKGATA 567

Query: 1049 ISRHLKAQLFILDSAYEPSE--LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106
            +  HL   +  L S    ++  LQ  +R+F  G  V   VL     +  + L L+     
Sbjct: 568  VLVHLADGITGLVSELHLADVRLQHPERKFREGVPVKARVLYTEPARHQIHLTLK----- 622

Query: 1107 ISDKTVDISNDNMQT---FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1163
               KT+  S+ N  T    I EG    G I+ +     G  V+     YG V       +
Sbjct: 623  ---KTLVNSDINPWTDYNMIKEGAAGPGIIANVRR--NGATVR----FYGTVKAW----L 669

Query: 1164 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1223
             V++    + E   D    +  GQ V  + + ++   R               +S  + +
Sbjct: 670  PVAEMSEAFIE---DATKHFSAGQVVNVRAISVNPEERQLL------------VSCKDPA 714

Query: 1224 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1283
             + T+ +           L+P  IV+G V   T +   + L   +   + + +L+DG  +
Sbjct: 715  AIDTNKEA------AFNALNPGAIVKGTVLEKTDEAVTLDLGNGVKGLLRIGHLTDGSEK 768

Query: 1284 ---SPEKEFPIGKLVAGR-VLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIV 1338
               S  K+  +G ++    VL+    SK V V+ K +  + A  S++  ++ +L  G+ V
Sbjct: 769  KDISTMKKIRVGGVLEDLVVLAKHVKSKTVTVSNKPTLRKDAQASKLAISVEDLQAGETV 828

Query: 1339 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1398
             G ++ +    +FI + N  + G    S+L+E+ +       R  + V V++  VD  K 
Sbjct: 829  HGFVRGILPDKVFIELGN-GISGPVFKSQLTEEMLSAPNFGLRKDQSVTVRVSHVDPAKG 887

Query: 1399 RISLGMKSSYFKNDADNLQMSSEEESDEAIEE 1430
               L MK    + +AD +   + + + + +EE
Sbjct: 888  FFWLSMK---LEANADEVAPKTTDNAGQPLEE 916



 Score = 48.5 bits (114), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 18/227 (7%)

Query: 490 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLVSG---- 541
            E S  + +G   K RI+          LS   K    P    ED  +K G +V G    
Sbjct: 500 SEDSGAFKLGSTHKARIIGYNDMDGLFQLSLEQKILDQPFLRIED--IKAGQVVKGKVHK 557

Query: 542 -VVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDN 598
            + D     AV+V+ +A G + G +   HLAD  L+H    +   + G     ++L  + 
Sbjct: 558 LIADKKGATAVLVH-LADGIT-GLVSELHLADVRLQHP---ERKFREGVPVKARVLYTEP 612

Query: 599 ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 658
               + L+ K +L+NS     +D + I   +   G + N+   G  VRF G +  + P +
Sbjct: 613 ARHQIHLTLKKTLVNSDINPWTDYNMIKEGAAGPGIIANVRRNGATVRFYGTVKAWLPVA 672

Query: 659 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
           +  +    D +K +  GQ V    + VN E  ++ +S K      T+
Sbjct: 673 EMSEAFIEDATKHFSAGQVVNVRAISVNPEERQLLVSCKDPAAIDTN 719



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 88/228 (38%), Gaps = 40/228 (17%)

Query: 593  LLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVR 646
            ++ +D  +  L LSA+ S + S+  LP       D + +  N VV G++ ++ + G +VR
Sbjct: 1179 IIDIDLPNKKLSLSARPSRVLSST-LPIKDPEIKDRAQLKVNDVVRGFIKHVADNGVYVR 1237

Query: 647  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
                +  +   S   D    D    ++V Q V   ++    +     LSLK         
Sbjct: 1238 LGPHVEAYVRVSHLSDAYIKDWKSAFHVDQLVTGKVISNKPDQRNPQLSLK--------T 1289

Query: 707  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
            S +Q  +   E I          S LK       G ++   V    DFGV +     ++V
Sbjct: 1290 SIIQADY--SEPIEF--------SNLK------AGQIVTATVRHVEDFGVFLVVANSNNV 1333

Query: 767  YGFITHHQLAGATVE---------SGSVIQAAILDVAKAERLVDLSLK 805
             G     QLA   V+          G  ++A +L V    R +  +LK
Sbjct: 1334 SGLCHVSQLADTPVDKEKVKEMYKKGDAVKAKVLKVDSNTRKISFTLK 1381


>gi|167386167|ref|XP_001737645.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165899481|gb|EDR26067.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 1725

 Score =  183 bits (465), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 158/259 (61%), Gaps = 3/259 (1%)

Query: 1539 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1598
            DE ++ V   P++S  WIK M   +   ++++AR + + A++TIN R+  EKLNIW A  
Sbjct: 1466 DECQKGVEKEPDNSTEWIKLMQCFIQRKEIDEARKVGKTAIETINFRKLEEKLNIWKALM 1525

Query: 1599 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 1526 QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 1583

Query: 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 1584 SCKVYKKYCNFLMRNNREEEIKNTISKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 1643

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1777
            FE IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    KYLE+E+
Sbjct: 1644 FEDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 1703

Query: 1778 SVGEEERIEYVKQKAMEYV 1796
              G+E + E+V+  A  +V
Sbjct: 1704 KYGDESKQEHVRDIAKSFV 1722



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 131/588 (22%), Positives = 252/588 (42%), Gaps = 50/588 (8%)

Query: 282 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 341
           + ++D  +G+   I  T      +++   + +E    + K++K GS  + RI+ +   +G
Sbjct: 328 ITKIDENVGI---IGETEDKEEVFLSKKQIKDEYCLDIPKEFKIGSIHKGRIMYYSAFDG 384

Query: 342 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 401
                 + S       + +D+K GM+++G +  ++  G  V+    +   C   +  +  
Sbjct: 385 YCGITTRESILSDKYQSINDIKSGMIIEGIIKEINENGINVKIGEKIYGFCDKINSGDIP 444

Query: 402 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 459
           I      FK   +  FRVL V ++   I +THK+TL+K    I+++  E     IT G +
Sbjct: 445 IEDLKSVFKKDQKSKFRVLTVNNRNNSIYLTHKRTLMKLTTPIITNIEETELNTITFGIV 504

Query: 460 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 518
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 505 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKIRIISFDKQLLLCSL 560

Query: 519 SFMMK---PTRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLAD 572
           +   +   P +  +     K+G +  G+V V     +++  I  G  +    +P   + D
Sbjct: 561 NLFPEENVPEKYEDVSRHFKVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVID 619

Query: 573 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 632
             E   + K +I+ G    + L+L N+   ++++ K SLI+  Q++    S        +
Sbjct: 620 GDEGKDIPK-MIRNGTIIKECLLLKNQMGQMIITTKKSLISLRQKIGKFNSKEEMTVGKY 678

Query: 633 -GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
            GYV  I    CF+ F   +T    R    D     + +    GQ+V   +   N     
Sbjct: 679 IGYVSKIKGKYCFISFYNGVTIVCYRMNVSDSNLP-IEEVLENGQTVYGYLNKKN----- 732

Query: 692 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIG--------- 741
              SLK+S   S    +M    L  E+    +       E+K ++G+ IIG         
Sbjct: 733 -IFSLKESSVGSIKEEYM---LLRIERDVEPKYGSQIKIEIKDIKGYGIIGKSKEREETI 788

Query: 742 ----SVIEGKVHE----SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV 793
               + IEG + E    SN   +V+  ++   +   I    +   ++E   + +  ++ +
Sbjct: 789 FIPKTGIEGDIKEISKGSNMKCIVIGVDKERKMIDCIQEKMIKKESIEINKIYKGKVI-I 847

Query: 794 AKAERLVDL-SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 840
            K E  V L     VF+++ R  N  +   K++ +    K++  +Q +
Sbjct: 848 NKEEYCVCLVEGNIVFVNKIR-MNGGKYIVKEEVEINIGKEMEGYQNI 894


>gi|429860182|gb|ELA34927.1| rRNA biogenesis protein [Colletotrichum gloeosporioides Nara gc5]
          Length = 1773

 Score =  183 bits (465), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 198/742 (26%), Positives = 332/742 (44%), Gaps = 59/742 (7%)

Query: 5   GVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL----------LPT 51
           G ++ ++   L I LP  L G   +A  +D ++  LD  +E +++            L +
Sbjct: 152 GQISHIDPVQLTIALPNNLTGHVSIASISDTINAKLDGAMETSDNESEDEDEEDDVDLKS 211

Query: 52  IFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 110
           +F +GQ V   VL   DD      KR+I LSLR      GLS + V   + L A + S++
Sbjct: 212 MFRIGQYVRAYVLSTSDDTAGGKAKRRIELSLRPVDTNTGLSSDDVVANVTLMASIASVQ 271

Query: 111 DHGYILHFGLPS-FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDP 166
           DHGY ++ G+     GFL +  +    G+D   ++PG +   VV+ +  T  VV LS+DP
Sbjct: 272 DHGYEMNLGIDGDLKGFLSKKEVG--PGMDEASLRPGAVCLCVVKGV--TGIVVQLSADP 327

Query: 167 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 226
             +           +I+  +PG +    +  + + G+    L +   T D+ H       
Sbjct: 328 QKLGNTSNVASNAPTINSFLPGTLADVLLTEVTKRGLQGKLLGHLPVTADLIHSGVGPDG 387

Query: 227 TNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLH-----------NRAPPSHVKV 273
            +    Y    +V ARI+   P ++   +G++L P++ +            +AP   + +
Sbjct: 388 VDLDAKYKVGGRVKARIICNFPAAKEPKLGISLLPHINNLQSKSSGKGSRAKAPLDLLPI 447

Query: 274 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVR 330
               +   V +V+  +GL +D     +S   +V IS V + +V  L +    +K G+  R
Sbjct: 448 AAFAETCTVRQVEPDIGLYVDTGVPGIS--GFVHISRVKDGKVDALYESSGPFKVGTTHR 505

Query: 331 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFP 385
            R++G+  L+G+     + S  +       DV  G +V GK+    I  +   G IV+  
Sbjct: 506 GRVVGYSPLDGMFLLSFEKSVLDQAFIRLEDVPIGQIVSGKIEKMIIGENGVSGLIVKLA 565

Query: 386 GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAIL 443
             +       H ++ ++  P KKF+ G E+  RVL V+ ++  + +T KK+LV S   I+
Sbjct: 566 ENIAGYVHESHFADVKLQHPEKKFREGMEVKARVLSVRLRKHQLRLTLKKSLVSSDSTII 625

Query: 444 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 503
            +Y +    + T G IT +   G  + F+  V+GF P S++      +P   +  GQVV 
Sbjct: 626 KNYDDVEVDMQTPGTITSVSADGARLEFFGDVRGFLPVSQMSEAYIKDPREHFRAGQVVS 685

Query: 504 CRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
             ++S +P  RR+ +S    P+    D       +K+G LVS  V   T + V V +   
Sbjct: 686 VHVLSVVPEERRLVVS-CKDPSAFGLDKQAALKALKIGDLVSAKVSQKTEDEVFVDLEES 744

Query: 559 GYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLINSA 615
           G  K  I   HL D     T      I+ G     L+VLD NE    ++L+ K S I ++
Sbjct: 745 GL-KAIIRVGHLTDKSASKTEAALKRIRVGQTLTDLMVLDKNERRRAVILTQKPSFIEAS 803

Query: 616 Q--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 673
           +  +L S    +   +V   YV  I     +V+F G LT   P+SK     +   S    
Sbjct: 804 KNGKLLSSYDDVTVGAVAPAYVREIGPFAVYVQFGGNLTAILPKSKLDREVQEKASFGMR 863

Query: 674 VGQSVRSNILDVNSETGRITLS 695
             QSV   I+  N E  RI ++
Sbjct: 864 KHQSVEVKIVSSNPEQKRIIVA 885



 Score =  176 bits (445), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/263 (38%), Positives = 161/263 (61%), Gaps = 10/263 (3%)

Query: 1530 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1589
            L+   P+T  ++ERL+   P+SS +WI+YMA  + ++++ KAR IAERA++TINIRE+ E
Sbjct: 1482 LDAHGPQTATDYERLLLGQPDSSQLWIEYMALQMKVSELSKAREIAERAIKTINIREQTE 1541

Query: 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1649
            KLN+W+AY NLE  YG   + +  +VF+RA QY D ++VH  L  +Y ++ + K AD++ 
Sbjct: 1542 KLNVWIAYLNLEVAYGT--KTSTDEVFKRACQYNDEQEVHERLASIYIQSGKLKQADDVF 1599

Query: 1650 YKMIKKFK-HSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1706
              ++ KFK  S  VW+     L     + +  +A++ RA  +L +    + +++ A LEF
Sbjct: 1600 QSLVNKFKSKSPDVWVNYAHFLHVTMNEPDRARALLPRATQALEQRHTAQLMARFAALEF 1659

Query: 1707 K--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD--LIRGLFERAI-SLSLP 1761
            K  NG A+RGR+ FE IL+ +PKR D W   +D E+   + D   IR +FER   +  L 
Sbjct: 1660 KSPNGDAERGRTTFETILATWPKRFDFWGQLIDLELSAAEPDATAIRDVFERGTKAKGLK 1719

Query: 1762 PKKMKFLFKKYLEYEKSVGEEER 1784
             KK +  FK++ ++E+ +  + R
Sbjct: 1720 AKKAEKWFKRWADWEEKLDPKGR 1742



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 6/165 (3%)

Query: 365  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
            G +V+G V  V   G  VQ  G + AL  + ++S+  I      F+V   +  RV+ + +
Sbjct: 1205 GDIVRGFVKNVADNGVFVQLGGSISALVKIANLSDRYIKDWKGSFQVDQLVKGRVISIDT 1264

Query: 425  --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQGFAP 480
               +I ++ K ++V++      ++ +  +  I  G + K+E+ G F+   N   V G   
Sbjct: 1265 AINKIELSLKASVVENDYTPPITWKDIKESQIVTGKVRKVEEFGAFIVVDNSTNVSGLCH 1324

Query: 481  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
            RSE+   P  +   +Y+ G VVK +++S     RRI  +F +KP+
Sbjct: 1325 RSEMAEKPVEDARKLYNEGDVVKAKVISIDDEKRRI--TFSLKPS 1367



 Score = 43.9 bits (102), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 114/277 (41%), Gaps = 44/277 (15%)

Query: 3    LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 62
            L G V +VN++ L+I L   + G     D  D       + +E N L   F+ G+++   
Sbjct: 1114 LPGRVTKVNDRQLMIKLSDAVSGPVHLVDLCD-------DYDEANTLK--FNKGEIIRVS 1164

Query: 63   VLQLDDDKKEIGKRKIWLSLRLSLLYKGLS---------LETVQEGMVLTAYVKSIEDHG 113
            V+++D   K     ++ LS R S +    S         L  +  G ++  +VK++ D+G
Sbjct: 1165 VVEVDKSNK-----RLRLSTRPSRILSSTSPVADREITSLAQLTSGDIVRGFVKNVADNG 1219

Query: 114  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL----LLQGVVRSIDRTRKVVYLSSDPDTV 169
              +  G  S +  +   NL++    D K       L++G V SID     + LS     V
Sbjct: 1220 VFVQLG-GSISALVKIANLSDRYIKDWKGSFQVDQLVKGRVISIDTAINKIELSLKASVV 1278

Query: 170  SKCVT-----KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
                T     KD+K   I        V+ +V+ + E G  +  +   T    + H     
Sbjct: 1279 ENDYTPPITWKDIKESQI--------VTGKVRKVEEFGAFI-VVDNSTNVSGLCHRSEMA 1329

Query: 225  --PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 259
              P  + +  YN+   V A+++ +D   R +  +L P
Sbjct: 1330 EKPVEDARKLYNEGDVVKAKVISIDDEKRRITFSLKP 1366



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 114/268 (42%), Gaps = 16/268 (5%)

Query: 180  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 239
            I  D L    ++  RV  + +  +M+      +G V +  L + +   N    +N+ + +
Sbjct: 1103 IKWDSLKKNQILPGRVTKVNDRQLMIKLSDAVSGPVHLVDLCDDYDEANTLK-FNKGEII 1161

Query: 240  NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 299
               ++ VD +++ + L+  P  + +   P  V   +I   +++   D   G + ++    
Sbjct: 1162 RVSVVEVDKSNKRLRLSTRPSRILSSTSP--VADREITSLAQLTSGDIVRGFVKNVADNG 1219

Query: 300  V------STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 353
            V      S  A V I+++++  ++  +  ++    V+ R++            LKAS  E
Sbjct: 1220 VFVQLGGSISALVKIANLSDRYIKDWKGSFQVDQLVKGRVISIDTAINKIELSLKASVVE 1279

Query: 354  G---LVFTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKK 408
                   T  D+K   +V GKV  V+ FGA  +V     V  LC    M+E  +    K 
Sbjct: 1280 NDYTPPITWKDIKESQIVTGKVRKVEEFGAFIVVDNSTNVSGLCHRSEMAEKPVEDARKL 1339

Query: 409  FKVGAELVFRVLGV--KSKRITVTHKKT 434
            +  G  +  +V+ +  + +RIT + K +
Sbjct: 1340 YNEGDVVKAKVISIDDEKRRITFSLKPS 1367


>gi|330779404|gb|AEC46534.1| programmed cell death 11-like protein [Spodoptera litura]
          Length = 408

 Score =  183 bits (465), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/266 (37%), Positives = 167/266 (62%), Gaps = 3/266 (1%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            PR+ ++FER + + PNSS +WI YMAF L   DVEKAR++A +AL TI+ RE  +K N++
Sbjct: 143  PRSSEQFERALLAHPNSSQLWIAYMAFHLQATDVEKARNVARKALSTISFREVLDKFNVY 202

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            VA  ++E  +G    E++ KV + ALQ  +P K+H  LL +Y  T +++    L+  M++
Sbjct: 203  VAMLSIECRFGTM--ESLQKVLEEALQMNEPLKIHSKLLDIYVETGKHQDLVALVELMMR 260

Query: 1655 KFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713
            K+K    ++++      +    E  + V+Q+A+  L + +H+  + Q A++E +NG  +R
Sbjct: 261  KYKRDPSMYIQCGAACFQLGLVEKARQVMQKAISLLEKKEHVSVLVQFALMENRNGGRER 320

Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
              ++FE +L+ YP R D+ S Y+D  ++  D D IR + ER  S  LP +KMK LFKK++
Sbjct: 321  AEALFEQVLAVYPARVDVCSTYVDMLLKNDDKDHIRQVMERMTSQKLPARKMKILFKKWI 380

Query: 1774 EYEKSVGEEERIEYVKQKAMEYVEST 1799
            E E+ +G+ E++E ++Q+A +Y+E  
Sbjct: 381  EVEERMGDLEQVEVLRQRAAQYMEKA 406


>gi|124808061|ref|XP_001348215.1| U3 small nucleolar ribonucleoprotein, U3 snoRNP, putative [Plasmodium
            falciparum 3D7]
 gi|23497105|gb|AAN36654.1| U3 small nucleolar ribonucleoprotein, U3 snoRNP, putative [Plasmodium
            falciparum 3D7]
          Length = 468

 Score =  183 bits (465), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 104/278 (37%), Positives = 164/278 (58%), Gaps = 20/278 (7%)

Query: 1537 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1596
            TP ++ERL+ S  N S +WI Y+AF L   ++E+AR +AERAL+TI+I E +EKLNI++ 
Sbjct: 190  TPFDYERLIASEKNKSAIWISYIAFYLEQNNLEEARKVAERALKTIDIHEIDEKLNIYLC 249

Query: 1597 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1656
            Y N+E  YG+   +    +F+RAL   + K ++L  + + ++ ++     +L  + IKKF
Sbjct: 250  YINMECLYGDKLND----IFKRALLCNNEKSIYLHTIHILKKNKKLTQLKDLCEEAIKKF 305

Query: 1657 KHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1714
            K+S K+W   +Q L    + +E    ++ ++L SLP+ KH+  I   A  E+K    +RG
Sbjct: 306  KYSKKIWSCYLQILHNTFKDEEYAHNILLKSLHSLPKKKHLNMIINAARFEYKYSNKERG 365

Query: 1715 RSMFEGILSEYPKRTDLWSIYLDQEI--------------RLGDVDLIRGLFERAISLSL 1760
            ++ FE ++ EYPKR+DLW  YLD  I               L ++  IR +FER +S   
Sbjct: 366  KTYFEKLIQEYPKRSDLWFTYLDIHINSLTKNENKEKIKLNLKELQFIRNIFERFLSYKF 425

Query: 1761 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             P+ MK +F K+L +EKS G     + V++KA +YVES
Sbjct: 426  KPRVMKIIFTKWLLFEKSQGNMHSQKTVQEKAYKYVES 463


>gi|183235504|ref|XP_648617.2| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169800516|gb|EAL43230.2| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
            HM-1:IMSS]
          Length = 811

 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1539 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1598
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 552  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 611

Query: 1599 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 612  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 669

Query: 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 670  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 729

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1777
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 730  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 789

Query: 1778 SVGEEERIEYVKQKAMEYVES 1798
              G+E R E+V+  A  +V +
Sbjct: 790  KYGDESRQEHVRDIAKSFVST 810


>gi|183233031|ref|XP_001913793.1| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169801769|gb|EDS89432.1| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
            HM-1:IMSS]
          Length = 799

 Score =  182 bits (462), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1539 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1598
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 540  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 599

Query: 1599 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 600  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 657

Query: 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 658  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 717

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1777
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 718  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 777

Query: 1778 SVGEEERIEYVKQKAMEYVES 1798
              G+E R E+V+  A  +V +
Sbjct: 778  KYGDESRQEHVRDIAKSFVST 798


>gi|449703273|gb|EMD43755.1| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica KU27]
          Length = 725

 Score =  181 bits (460), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1539 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1598
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 466  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 525

Query: 1599 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 526  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 583

Query: 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 584  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 643

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1777
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 644  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 703

Query: 1778 SVGEEERIEYVKQKAMEYVES 1798
              G+E R E+V+  A  +V +
Sbjct: 704  KYGDESRQEHVRDIAKSFVST 724


>gi|195111152|ref|XP_002000143.1| GI22689 [Drosophila mojavensis]
 gi|193916737|gb|EDW15604.1| GI22689 [Drosophila mojavensis]
          Length = 1396

 Score =  181 bits (459), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/267 (38%), Positives = 154/267 (57%), Gaps = 8/267 (2%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P T D+FERLV + PN S  WI+YM+FMLS  +++KAR IA RA++TI  RE  E  N+W
Sbjct: 1129 PETIDQFERLVLAEPNDSKTWIQYMSFMLSNTEIDKAREIARRAIKTIAFRETKELRNMW 1188

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            +A  NLE  Y +   + V+K    AL + DP + ++ L+ + +   Q +    +L  +++
Sbjct: 1189 MALLNLELSYNSSNFDDVLK---EALTHTDPLETYIKLVEVLKAHNQKERLISVLNNLMR 1245

Query: 1655 KFKHSCKVWLRRVQR---LLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1711
            KFK   +VW  RV           E VQ  +QRA+  LP+++HI  I   A +  KN   
Sbjct: 1246 KFKSDLQVW--RVAADAYFWLGMPERVQPTLQRAINVLPKNEHINCIVAFAKIYAKNNDN 1303

Query: 1712 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771
               +++ + I++ YPKR D+W +Y D  I+ G +D  R L ERA+   L P KM  ++KK
Sbjct: 1304 GMAQTLLDDIVTSYPKRIDIWVLYADMLIKAGLIDSARNLMERAVLQKLQPDKMLVIYKK 1363

Query: 1772 YLEYEKSVGEEERIEYVKQKAMEYVES 1798
            +L+ E+  G EE    VK+ A +YV+S
Sbjct: 1364 FLDLEEKHGTEENAARVKKLAEQYVQS 1390



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 115/502 (22%), Positives = 222/502 (44%), Gaps = 33/502 (6%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP---ILDNEI--EANEDNLLPTIFHV 55
           M + GVV   +   L I LPG +   A  AD  D    +  + +  +++E   L  +F+V
Sbjct: 72  MLVMGVVKATDATSLQIALPGRMTARALVADISDAYGRVAQSYMAGDSSEYRDLTALFNV 131

Query: 56  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
           GQ+V    ++   D  E  +  + L+L+ S +   L    +++G +    ++ I++HG +
Sbjct: 132 GQIVYGRAIKTRKDS-ESKRMSLLLTLKPSEVNSSLHHANIKKGFIFVGAIEEIQEHGCV 190

Query: 116 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVVYLSSDPDTVSKCVT 174
           +  G+     F+P  N A+   I     L ++ +    D+ T + V +  D     K   
Sbjct: 191 IETGIDGLQAFVPIENAAQKHHIGQLIFLKVKQIQHDSDKSTCQCVCIEQD-----KLKI 245

Query: 175 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDY 233
           K     ++D ++PG +V  +V   L+NG+  S +   F G V+  HL     +     DY
Sbjct: 246 KSQHETNLDYILPGSIVKFKVTKHLKNGLEGSIMNEAFRGYVNEHHLAEALQSP---QDY 302

Query: 234 NQHKKVNARILFVDPTSRAVGLTLNPYL-LHNRAPPSH----VKVGDIYDQSKVVRVDRG 288
             +++  AR+L+V P ++ V LT N  + +H   P S     +K G I ++++V+R   G
Sbjct: 303 EVNEEYLARLLYVMPLTKLVYLTFNLNITVHPEQPESEGEELLKKGSIVEKARVLRHGTG 362

Query: 289 LGLLLDIPSTPVSTPAYVTISDVAEEEVRK--LEKKYKEGSCVRVRILGFRHLEGLATGI 346
            G+++ +        +Y +I    +    +  +  KY   S  +VR+LG+  +E L    
Sbjct: 363 -GIVVLLNHKYKGLISYGSIKSNFKGNYDQDVVLAKYSSKSKHKVRVLGYDVIESLYYCT 421

Query: 347 LKASAFEGLVFTHSDVKPGMVVKGKVIAVD-SFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
              +     ++T  D++ G +V  +++  D   G      G V  +     ++      P
Sbjct: 422 DDPNVVNEKMYTLEDIQTGDIVSARIVKPDPKIGGYSVKIGKVNGIIEQLQLA------P 475

Query: 406 GKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             +++VG  +  RVL +   R    ++ +   +   + +L+S   A    +  G + K E
Sbjct: 476 NTRYEVGQRVRCRVLEISLDRKICYLSSRNEYLSKGIKLLTSLQLAQPGHVFTGTVVKCE 535

Query: 464 KHGCFVRFYNGVQGFAPRSELG 485
                V+F  G++G   +  L 
Sbjct: 536 ASYVLVKFCGGIKGVLHKQRLN 557



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 25/152 (16%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY---------VESPEKE-- 1288
            + L  NM+V G VK   +    I L  ++ A+ L++++SD Y          +S E    
Sbjct: 66   DTLQENMLVMGVVKATDATSLQIALPGRMTARALVADISDAYGRVAQSYMAGDSSEYRDL 125

Query: 1289 ---FPIGKLVAGRVLSV--EPLSKRVEVTLKTSDSRTASQSEINNL---SNLHVGDIVIG 1340
               F +G++V GR +    +  SKR+ + L      T   SE+N+    +N+  G I +G
Sbjct: 126  TALFNVGQIVYGRAIKTRKDSESKRMSLLL------TLKPSEVNSSLHHANIKKGFIFVG 179

Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
             I+ ++ +G  I      L     +   ++ H
Sbjct: 180  AIEEIQEHGCVIETGIDGLQAFVPIENAAQKH 211


>gi|157868539|ref|XP_001682822.1| rRNA biogenesis protein-like protein [Leishmania major strain
            Friedlin]
 gi|68126278|emb|CAJ03797.1| rRNA biogenesis protein-like protein [Leishmania major strain
            Friedlin]
          Length = 738

 Score =  181 bits (459), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/295 (36%), Positives = 166/295 (56%), Gaps = 31/295 (10%)

Query: 1525 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            A ER +E   P +P+EF+RL+ ++PNSS+VW++YMA+ + +   E AR +AE+AL TI +
Sbjct: 442  AYERGMETAVPTSPEEFQRLLLANPNSSYVWMQYMAYHVGLQQYEAARQVAEKALSTIGV 501

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER------ 1638
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 502  REQEELLNVWVAYLNIENLYGT--EESLSAVFRRAQQR------QLNQLTLFERLADIYA 553

Query: 1639 --TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRH 1692
               + N+L   L   M  KF+   + W R    L+ Q   G +  ++R L      L R 
Sbjct: 554  ASRKPNQLL-ALCRAMTGKFRTERRTWERLGIVLVDQ---GKRDQLKRTLKDMGDVLKRD 609

Query: 1693 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDV 1745
                 I   AI E+K+G  + GR++FEG+L + PKR+D+W+IY DQE+ L       G  
Sbjct: 610  DATLAIVHIAIHEYKHGSPENGRALFEGLLRKVPKRSDVWTIYTDQEMGLLNRKDPMGST 669

Query: 1746 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
              +R + +R ++++   K M+ +  ++L +EK  G    +E VK+ A  YVES +
Sbjct: 670  LQVRQILQRTVAMNFSAKVMQQVLTRFLSFEKLHGTPADVESVKKCARTYVESKI 724


>gi|449018016|dbj|BAM81418.1| similar to rRNA biogenesis protein; rrp5 homolog; multiple S1 rna
            binding domain protein [Cyanidioschyzon merolae strain
            10D]
          Length = 2038

 Score =  181 bits (459), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/312 (35%), Positives = 176/312 (56%), Gaps = 16/312 (5%)

Query: 1497 DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1556
            D ++++DE +       + E  E+  RA  E L +   P+T  +FER +   PN   +WI
Sbjct: 1721 DWSRSVDEASGAARAPLDDEALERGERALVESLHK---PQTAADFERALLGRPNDPQLWI 1777

Query: 1557 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1616
             YMA  L+  +  +AR IAERALQTI+ RE   ++ +W+AY NLE       +     +F
Sbjct: 1778 GYMALHLATGNELEARGIAERALQTIHYREYQARMRVWIAYLNLERSANAAADPLESDIF 1837

Query: 1617 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRR-VQRLLKQQ 1674
            +RALQ CD  ++HL L    E  ++ KLA  +     ++  H +  VW+       L+  
Sbjct: 1838 RRALQNCDSLQLHLRLARSLEAAQEVKLAGRVYEHACRRHGHQTASVWIAYGAFCFLRSS 1897

Query: 1675 QEGV-QAVVQRALLSL--PRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTD 1730
            QE + + +++RAL +L  P  +H++ I + A  EFK +G  +RGR++ E ++  +PKR D
Sbjct: 1898 QEVLGRTLLERALRALMDP-AQHVQCILKFATFEFKGSGEPERGRTLLENLIQAFPKRLD 1956

Query: 1731 LWSIYLDQEIRL-----GDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEER 1784
             W++YLD E+ L     G ++L+R LF R  +L +L  K+ K  FK+YLE E++ G+   
Sbjct: 1957 FWNVYLDMELMLLRQERGKLELVRRLFRRCTALPNLSLKQAKHFFKRYLEVERAFGDASS 2016

Query: 1785 IEYVKQKAMEYV 1796
            +E+VKQ A  YV
Sbjct: 2017 VEHVKQAARAYV 2028



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 173/386 (44%), Gaps = 39/386 (10%)

Query: 143 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
           G++    + S +  R+   L +DP  V++  T+     +++ L PGM+V  +V S  E  
Sbjct: 250 GMVCWASLASWNEQRRTGILQNDPKMVAEAFTRG--HWTLEQLSPGMLVEAQVLSRDERF 307

Query: 203 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK---VNARILFVDPTSRAVGLTLNP 259
            ++ FL  F G ++ FHL        W+ D+ + +    +  R++++D   R + +T   
Sbjct: 308 AIVRFLQVFEGILEWFHLD------QWE-DFARLEPDAILRVRLIYIDCRRRRIMVTART 360

Query: 260 YLLHNRAPPSHVKVGDIYDQS------KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
            L++    P  V     Y +       +V +++ G G+ L      +    +     +++
Sbjct: 361 SLVNTLTLPLLVSAARRYHRGSFVESLRVFKIENGRGIWLRKDKEAIYF--FADRKMLSD 418

Query: 314 EEVRKLEKKYKEGSCV-RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 372
           E   ++E+ +  G+ V R R++    +EG+    LK S  E      S+++PG +V+ +V
Sbjct: 419 ERFSRMERLFPLGTVVPRARVVSHMAMEGIVRVSLKPSLLERKFMDVSELEPGALVRCRV 478

Query: 373 IAVDSFGAIVQFPG-------GVKALCPLPHMSEFEIV--KPGKKFKVGAELVFRVLGV- 422
           +   S       P         +    PL  +++  +   +  KKF  G++L  RV  V 
Sbjct: 479 LGWISVTPATATPSLRVSIEDCLSGEIPLELLTDVPVQWRRLEKKFPPGSQLRCRVWLVY 538

Query: 423 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF-VRFYNGVQGFAP 480
            K K++ +T +++LV S L IL+ +       +  G +   +  G + V FY    G  P
Sbjct: 539 PKRKQVLLTARRSLVDSDLPILAGWDTMQQGQVYAGILGPRDPSGAYRVLFYQRFTGILP 598

Query: 481 RSELGLDPGCEPSSMYHVGQVVKCRI 506
            + LG +      + +  GQV++ R+
Sbjct: 599 -ANLGTE-----MASFKSGQVIRVRV 618



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 98/200 (49%), Gaps = 22/200 (11%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +V  +V++V   G F+ L+  L A+ LL +L++G+V  P + +P+G  V   +       
Sbjct: 1394 VVGAFVRHVDQAGVFLNLAPGLVARCLLRDLAEGFVPDPVQVYPVGMHVQAMITDCGGSD 1453

Query: 1307 KR-VEVTLKTSDSRTASQSEINNL------SNLHVGDIVIGQIKRVESYGLFITI--ENT 1357
             R V V+L+ +  +   Q +          S +H+G + +G+++RV  +G+F+ +  + T
Sbjct: 1454 ARHVRVSLRAAQQQQQQQQQRAVAAEQAPTSAVHIGGVYLGRVRRVVPFGIFVELLTDRT 1513

Query: 1358 N-------LVGLCHVSELSEDH----VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            +          LCH SEL E       + +   +R G+ + V ++  D    R+SL  K+
Sbjct: 1514 DEGDAQVLATALCHRSELVEQGPWPLPEELPQRFRVGQHLPVLVVARDAAG-RLSLSAKA 1572

Query: 1407 SYFKNDADNLQMSSEEESDE 1426
            S  K +A   Q +S +  DE
Sbjct: 1573 SLIK-EALATQCASAKSIDE 1591


>gi|183234827|ref|XP_001914090.1| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169800889|gb|EDS89135.1| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
            HM-1:IMSS]
          Length = 517

 Score =  181 bits (458), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1539 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1598
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 258  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 317

Query: 1599 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 318  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 375

Query: 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 376  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 435

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1777
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 436  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 495

Query: 1778 SVGEEERIEYVKQKAMEYVES 1798
              G+E R E+V+  A  +V +
Sbjct: 496  KYGDESRQEHVRDIAKSFVST 516


>gi|164660947|ref|XP_001731596.1| hypothetical protein MGL_0864 [Malassezia globosa CBS 7966]
 gi|159105497|gb|EDP44382.1| hypothetical protein MGL_0864 [Malassezia globosa CBS 7966]
          Length = 278

 Score =  181 bits (458), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 97/242 (40%), Positives = 147/242 (60%), Gaps = 4/242 (1%)

Query: 1559 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1618
            M F L + +V+KAR +A RA+Q I+ REE EKLN+W+A  N+EN YG+P  E V  VF+ 
Sbjct: 1    MTFYLQLGNVDKARQVARRAIQVIHFREEQEKLNVWMALLNVENMYGSP--ETVEAVFKE 58

Query: 1619 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG- 1677
            A QY D  +VH  +L +YE   +   A  L  + +KKF     +W+R  +  L+  +E  
Sbjct: 59   AAQYNDALEVHSRMLSIYEHGNKIDDAAALFPRAVKKFSFVPDMWIRWYEFCLRHDREDE 118

Query: 1678 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1737
              A+V R+L SL R +H++ ++  A+ E+K G  +  R+MFE ++S YPKRTD+W  Y+D
Sbjct: 119  AHALVPRSLQSLDRKQHLRVLTAYALAEYKLGDVEHARTMFETLVSRYPKRTDIWWQYID 178

Query: 1738 QEIRLGDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            QE+RL +    R L ER ++      K++K L +K+L  EK VG+E  ++ V  +A  +V
Sbjct: 179  QEVRLENAAGARSLMERCLAARKHTTKQVKSLLQKWLVIEKRVGDEAGVQRVLDRARAFV 238

Query: 1797 ES 1798
             S
Sbjct: 239  AS 240


>gi|193582568|ref|XP_001948922.1| PREDICTED: protein RRP5 homolog [Acyrthosiphon pisum]
          Length = 346

 Score =  180 bits (456), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 170/292 (58%), Gaps = 5/292 (1%)

Query: 1506 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1565
            N    +KK++E R +++  AE   +E+D P  PD +ERL+  +P SSF+W+KYMAF L  
Sbjct: 52   NQWREEKKQREIRNRKLE-AELIQIERD-PLNPDHYERLLLDNPGSSFIWMKYMAFYLHT 109

Query: 1566 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1625
             ++E AR+ A+RAL TI+ REE EKLN+W A    E  YGN  +E+  +    AL+  D 
Sbjct: 110  RNLETARATAKRALTTIDAREEIEKLNVWTALLIAEELYGN--KESFKQTMNEALRSNDE 167

Query: 1626 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR-RVQRLLKQQQEGVQAVVQR 1684
              V++ +L ++E +   K  D+   K+I KF  S   +LR  +      + +  + ++Q+
Sbjct: 168  YMVYIKILEIFEESNVLKGLDKFTSKIITKFSDSLDAYLRCAIMYFRLNKSDQARLILQK 227

Query: 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
            A+ +LP   H+  IS+ A+LE   G  +  +++FE +L+ YP R ++ S+Y+D  ++   
Sbjct: 228  AISNLPTKSHVIMISKFALLENHVGSKEEAQTLFEHVLTCYPSRINVLSLYVDMLVKSNK 287

Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            +DL R   ERA + +L P+KM  LF K+L+ EK  G  E ++ VK     YV
Sbjct: 288  IDLARHALERATTQTLAPRKMNSLFNKWLKLEKKHGTSESVDKVKICMNNYV 339


>gi|398014441|ref|XP_003860411.1| rRNA biogenesis protein-like protein [Leishmania donovani]
 gi|322498632|emb|CBZ33704.1| rRNA biogenesis protein-like protein [Leishmania donovani]
          Length = 737

 Score =  180 bits (456), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 164/295 (55%), Gaps = 31/295 (10%)

Query: 1525 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            A ER +E   P +P+EF+RL+ ++PNSS+VW +YMA+ + +   E AR +AE+AL TI +
Sbjct: 442  AYERGMETAVPTSPEEFQRLLLANPNSSYVWTQYMAYHVGLQQYEAARQVAEKALSTIGV 501

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER------ 1638
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 502  REQEELLNVWVAYLNIENLYGT--EESLSAVFRRAQQR------QLNQLVLFERLADIYA 553

Query: 1639 --TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRH 1692
               + N+L   L   M  KF+   + W R    L+ Q   G +  ++R L      L R 
Sbjct: 554  ASRKPNQLL-ALCRAMTGKFRTERRTWERLGIVLVDQ---GKRDQLKRTLKDMGDVLKRD 609

Query: 1693 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDV 1745
                 I   AI E+K G  + GR++FEG+L + PKR+D+WSIY DQE+ L          
Sbjct: 610  DATLAIVHIAIHEYKQGSPENGRALFEGLLRKVPKRSDVWSIYTDQEMGLLNRKDPTAST 669

Query: 1746 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
              +R +F+R ++++   K M+ +  ++L +EK  G    +E VK+ A  YVES +
Sbjct: 670  LQVRQIFQRTVAMNFSAKVMQQVLTRFLSFEKLHGTPADVESVKRFARTYVESKI 724


>gi|146085140|ref|XP_001465188.1| rRNA biogenesis protein-like protein [Leishmania infantum JPCM5]
 gi|134069285|emb|CAM67435.1| rRNA biogenesis protein-like protein [Leishmania infantum JPCM5]
          Length = 733

 Score =  179 bits (455), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 164/295 (55%), Gaps = 31/295 (10%)

Query: 1525 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            A ER +E   P +P+EF+RL+ ++PNSS+VW +YMA+ + +   E AR +AE+AL TI +
Sbjct: 438  AYERGMETAVPTSPEEFQRLLLANPNSSYVWTQYMAYHVGLQQYEAARQVAEKALSTIGV 497

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER------ 1638
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 498  REQEELLNVWVAYLNIENLYGT--EESLSAVFRRAQQR------QLNQLVLFERLADIYA 549

Query: 1639 --TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRH 1692
               + N+L   L   M  KF+   + W R    L+ Q   G +  ++R L      L R 
Sbjct: 550  ASRKPNQLL-ALCRAMTGKFRTERRTWERLGIVLVDQ---GKRDQLKRTLKDMGDVLKRD 605

Query: 1693 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDV 1745
                 I   AI E+K G  + GR++FEG+L + PKR+D+WSIY DQE+ L          
Sbjct: 606  DATLAIVHIAIHEYKQGSPENGRALFEGLLRKVPKRSDVWSIYTDQEMGLLNRKDPTAST 665

Query: 1746 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
              +R +F+R ++++   K M+ +  ++L +EK  G    +E VK+ A  YVES +
Sbjct: 666  LQVRQIFQRTVAMNFSAKVMQQVLTRFLSFEKLHGTPADVESVKRFARTYVESKI 720


>gi|183237274|ref|XP_001914593.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169799229|gb|EDS88631.1| hypothetical protein EHI_117370 [Entamoeba histolytica HM-1:IMSS]
          Length = 407

 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 157/259 (60%), Gaps = 3/259 (1%)

Query: 1539 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1598
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 148  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 207

Query: 1599 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 208  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 265

Query: 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 266  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 325

Query: 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1777
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 326  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 385

Query: 1778 SVGEEERIEYVKQKAMEYV 1796
              G+E R E+V+  A  +V
Sbjct: 386  KYGDESRQEHVRDIAKSFV 404


>gi|444517556|gb|ELV11659.1| Protein RRP5 like protein [Tupaia chinensis]
          Length = 202

 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/196 (46%), Positives = 133/196 (67%), Gaps = 3/196 (1%)

Query: 1604 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1663
            YG+P  E++ K F+RA+QY +P KV L L  +Y ++E+ + A +L  +M+K+F+    VW
Sbjct: 2    YGSP--ESLTKAFERAVQYNEPLKVFLHLADIYTKSEKFQEAGDLYNRMLKRFRQEKAVW 59

Query: 1664 LRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1722
            ++    LL+Q Q G    V+QRAL  LP  +H+  IS+ A LEF+ G  +R +++FE  L
Sbjct: 60   IKYGAFLLRQSQAGASHRVLQRALECLPSKEHVDVISKFAQLEFQLGDPERAKAIFENTL 119

Query: 1723 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1782
            S YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E
Sbjct: 120  STYPKRTDVWSVYIDMTIKYGRQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTE 179

Query: 1783 ERIEYVKQKAMEYVES 1798
            + ++ VK KA+EYVE+
Sbjct: 180  KDVQAVKAKALEYVEA 195


>gi|389603784|ref|XP_003723037.1| rRNA biogenesis protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|322504779|emb|CBZ14565.1| rRNA biogenesis protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 742

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 163/294 (55%), Gaps = 29/294 (9%)

Query: 1525 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            A ER +E   P +P+EF+RL+ ++PNSS++W +YMA+ + +   E AR +AE+AL TI +
Sbjct: 446  AYERGIETAVPTSPEEFQRLLLANPNSSYMWTQYMAYHVGLQQYETARQVAEKALSTIGV 505

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1644
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 506  REQEELLNVWVAYLNVENLYGT--EESLSAVFRRAQQR------QLNQLALFERLADIYT 557

Query: 1645 ADE-------LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRHK 1693
            A         L   M  KF+   + W R    L+ Q   G +  ++R L      L R  
Sbjct: 558  ASRKPNQLLALCRAMTGKFRTERRAWERLGIVLIDQ---GKRDQLKRTLKDMGNMLKRDD 614

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVD 1746
                I   AI E+K+G  + GR++FEG+L + PKR+D+WS Y DQE+ L       G   
Sbjct: 615  ATLAIVHIAIHEYKHGNPENGRALFEGLLRKVPKRSDVWSTYTDQEMGLLIRKDPTGSTL 674

Query: 1747 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
             +R +F+RA++++   K M+ +  ++L +EK  G    +E VK+ A  YVE+ +
Sbjct: 675  QVRQIFQRAVAMNFSAKVMQQVLTRFLSFEKLHGTLTDVEAVKKCARTYVEAKI 728


>gi|307107853|gb|EFN56095.1| hypothetical protein CHLNCDRAFT_145628 [Chlorella variabilis]
          Length = 1396

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 162/653 (24%), Positives = 285/653 (43%), Gaps = 93/653 (14%)

Query: 619  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 678
            PS    +   +++ GYV ++     FVRFL  LTG A  ++  D   +D    +  GQSV
Sbjct: 754  PSAVEAVAEGALLAGYVASVTSGAVFVRFLDGLTGRAGLAQLSDTFVSDPHLFFREGQSV 813

Query: 679  RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 738
            R+ ++D   +  R +++LKQS C S DA+++Q  F     +   ++  ++ +++ W   F
Sbjct: 814  RATVVDAQRQ--RFSVALKQSLCGSRDAAYLQSLF---SDLEAAEALSNDAADVDWAA-F 867

Query: 739  IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL-AGATVESGSVIQAAILDVAKAE 797
             IG +  G+VHE+  +G++   E H+DV G +  HQ+ AGA+ E G+ ++A +LD  K E
Sbjct: 868  AIGGIAPGEVHEAKGYGLICDLEAHADVVGLVAPHQMPAGASREPGTSVRAVVLDANKRE 927

Query: 798  RLVDLSLKTVFIDRFR-----------EANSNRQAQKKKRKREASKDLGVHQTVNAIVEI 846
             +VDLSL+   +   +                ++      K  A+ +L   Q +   VE+
Sbjct: 928  GVVDLSLQPRLVAAAQAAAAAADAETAPKKKKQKKAAVGGKAAAAAELKEGQRLECKVEL 987

Query: 847  VKE--NYLVLSLPEYNHS------IGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSS 897
            VKE   Y V++LP  + S      +G+   +D+N Q +  Q+    G S+ A+V ALPS 
Sbjct: 988  VKEEAGYCVVTLPAADGSPTGSPLLGFLPTTDFNLQYQQHQQPPRPGDSLTASVAALPSP 1047

Query: 898  STAGRLLLLLK---------------AISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 942
            +T GRLLL                    ++   S  ++A++   +  GS V+A +     
Sbjct: 1048 ATGGRLLLAAPVGGKPVKPAAAAGGTGAAKRPQSDKQQAQRMQQHATGSCVEATV----- 1102

Query: 943  LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1002
                        G +H    + D   +   +     +G+  TA         + ++  + 
Sbjct: 1103 ------------GAVHALHADLDLDKLAVAV-----LGRVTTA---------EGRRHSVL 1136

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECD----VSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1058
            E S +P  ++ +  G  L    C     +  GQ++ GYV  V         S  ++ + F
Sbjct: 1137 ECSSRPEAVSAARAGQALPRHPCPALAALRPGQQLQGYVQDVQQGHVWCAFSPSVRGRAF 1196

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
               +A    E +   +RF  G+ V   V+ ++K++K L + L      +       S   
Sbjct: 1197 ATQAASSIEECERLGKRFKPGQPVQATVVHVDKKRKALDVSL------LPAAPEAASEAA 1250

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF- 1177
                   G +  GR+S +  G GG+ V++     GRV  T++ +  V + L+G   GQ+ 
Sbjct: 1251 AAGAPAPGTVALGRVSAV--GGGGVRVRLSARSVGRVALTDIHDGAVEECLAGLQAGQYC 1308

Query: 1178 -------DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1223
                   D  +  D GQ    +      +      + LSLR S  G  + + +
Sbjct: 1309 QAVVLGPDTSASPDSGQEASGRKRGGRSSGAAAGQLLLSLRPSAGGRCAAHGA 1361



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 146/498 (29%), Positives = 221/498 (44%), Gaps = 81/498 (16%)

Query: 2   KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNE--------------------- 40
           KLWG V EV+ ++LV+ LP GLRG    A+A D +                         
Sbjct: 100 KLWGAVIEVSPRELVVSLPHGLRGHVAYAEASDWLAGQSKAAAAAGAEAAGEDGAAAIAA 159

Query: 41  ----------IEANEDNLLPTI---FHVGQLVSCIVLQLDDDKK---------------- 71
                       A  + +LP +   F +GQLV   V+ L                     
Sbjct: 160 AAAGKKRKAGTAAATEVVLPPLTDLFTIGQLVRGTVVALRSGSSGDSESAGKAGAKKAAA 219

Query: 72  ------EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG 125
                    K+++ LSLR+S +  GL  E+++EG+ L A V S+EDHGY+L  G+   +G
Sbjct: 220 AEGGAGGAKKKRVDLSLRVSKMNAGLGPESLREGLALPACVSSVEDHGYLLALGVKGVSG 279

Query: 126 FLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLS-----SDPDTVSKCVTKDLKGI 180
           FLP+   A          LL   V             S       P+ V+  V ++ +G+
Sbjct: 280 FLPKKAAAAAGRALAPGMLLDVAVPPGGAPKPAGGGGSVLGVVCAPEAVAMAVAREWEGL 339

Query: 181 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 240
           +I  L+PG +V+ RV+++L +G++ SFLTYF+GTVD FHL       +W+  ++ ++++ 
Sbjct: 340 NIGSLLPGQLVAARVRNVLSDGLLCSFLTYFSGTVDPFHLGADL-AADWRKQFSPNQRLR 398

Query: 241 ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ------SKVVRVDRGLGLLLD 294
           ARIL+VDP S+ V LTL+ +L+    P +   +G +  +        V RV+   GLL+ 
Sbjct: 399 ARILYVDPASKRVALTLHRHLISASLPVNFPMLGQVDVRPGMPVSGTVSRVEE-YGLLVA 457

Query: 295 IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 354
           + S   S  A V +   ++    K  +K+K G  V  ++L         T  LK S    
Sbjct: 458 LTS---SIRALVPVLHASDVGTAKALRKFKAGQTVAGKVLTVDPATKKVTMTLKPSLVGS 514

Query: 355 ---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV---KPGKK 408
               +    D  PG    G V     FG  V F GGV  L    H+SE  +    KP + 
Sbjct: 515 KLPPIARTQDAVPGGRSHGVVTGARDFGVFVSFFGGVTGLA---HVSECGLAADQKPPEA 571

Query: 409 FKVGAELVFRVLGVKSKR 426
           F+ G  +  RVLG    R
Sbjct: 572 FQAGQVVKCRVLGADPSR 589



 Score =  113 bits (283), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 2/168 (1%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           DV+PGM V G V  V+ +G +V     ++AL P+ H S+    K  +KFK G  +  +VL
Sbjct: 435 DVRPGMPVSGTVSRVEEYGLLVALTSSIRALVPVLHASDVGTAKALRKFKAGQTVAGKVL 494

Query: 421 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
            V   +K++T+T K +LV SKL  ++   +A     +HG +T     G FV F+ GV G 
Sbjct: 495 TVDPATKKVTMTLKPSLVGSKLPPIARTQDAVPGGRSHGVVTGARDFGVFVSFFGGVTGL 554

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 526
           A  SE GL    +P   +  GQVVKCR++ + P+ + + LS + KP +
Sbjct: 555 AHVSECGLAADQKPPEAFQAGQVVKCRVLGADPSRKGLKLSLVTKPKK 602



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 2/164 (1%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            D+ P M V G V  V   G  + L+  + A V + + SD       ++F  G+ VAG+VL
Sbjct: 435  DVRPGMPVSGTVSRVEEYGLLVALTSSIRALVPVLHASDVGTAKALRKFKAGQTVAGKVL 494

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            +V+P +K+V +TLK S   +     I    +   G    G +     +G+F++     + 
Sbjct: 495  TVDPATKKVTMTLKPSLVGS-KLPPIARTQDAVPGGRSHGVVTGARDFGVFVSFFG-GVT 552

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404
            GL HVSE            ++AG+ VK ++L  D  ++ + L +
Sbjct: 553  GLAHVSECGLAADQKPPEAFQAGQVVKCRVLGADPSRKGLKLSL 596



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 7/173 (4%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            I  L P  +V   V+NV S G            V   +L         K+F   + +  R
Sbjct: 341  IGSLLPGQLVAARVRNVLSDGLLCSFLTYFSGTVDPFHLGADLAADWRKQFSPNQRLRAR 400

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV--GDIVIGQIKRVESYGLFITIEN 1356
            +L V+P SKRV +TL       +       L  + V  G  V G + RVE YGL + + +
Sbjct: 401  ILYVDPASKRVALTLHRHLISASLPVNFPMLGQVDVRPGMPVSGTVSRVEEYGLLVALTS 460

Query: 1357 T--NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +   LV + H S++           ++AG+ V  K+L VD   +++++ +K S
Sbjct: 461  SIRALVPVLHASDVG---TAKALRKFKAGQTVAGKVLTVDPATKKVTMTLKPS 510



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 22/164 (13%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +E ++   ++ GYV +VTS   F+     L  +  L+ LSD +V  P   F  G+ V  R
Sbjct: 757  VEAVAEGALLAGYVASVTSGAVFVRFLDGLTGRAGLAQLSDTFVSDPHLFFREGQSV--R 814

Query: 1299 VLSVEPLSKRVEVTLKTS--DSRTAS--QSEINNL---------------SNLHVGDIVI 1339
               V+   +R  V LK S   SR A+  QS  ++L               +   +G I  
Sbjct: 815  ATVVDAQRQRFSVALKQSLCGSRDAAYLQSLFSDLEAAEALSNDAADVDWAAFAIGGIAP 874

Query: 1340 GQIKRVESYGLFITIE-NTNLVGLCHVSELSEDHVDNIETIYRA 1382
            G++   + YGL   +E + ++VGL    ++         T  RA
Sbjct: 875  GEVHEAKGYGLICDLEAHADVVGLVAPHQMPAGASREPGTSVRA 918



 Score = 44.7 bits (104), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 22/241 (9%)

Query: 468 FVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL-------- 518
           F+ +++G V  F     LG D   +    +   Q ++ RI+   PAS+R+ L        
Sbjct: 366 FLTYFSGTVDPF----HLGADLAADWRKQFSPNQRLRARILYVDPASKRVALTLHRHLIS 421

Query: 519 -SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 577
            S  +    + + D V+ G  VSG V  V    ++V + +    +  +P  H +D +  A
Sbjct: 422 ASLPVNFPMLGQVD-VRPGMPVSGTVSRVEEYGLLVALTSS--IRALVPVLHASD-VGTA 477

Query: 578 TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYV 635
             ++          ++L +D  +  + ++ K SL+ S  +LP  A      P    HG V
Sbjct: 478 KALRKFKAGQTVAGKVLTVDPATKKVTMTLKPSLVGS--KLPPIARTQDAVPGGRSHGVV 535

Query: 636 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
               + G FV F G +TG A  S+          + +  GQ V+  +L  +     + LS
Sbjct: 536 TGARDFGVFVSFFGGVTGLAHVSECGLAADQKPPEAFQAGQVVKCRVLGADPSRKGLKLS 595

Query: 696 L 696
           L
Sbjct: 596 L 596



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 112/275 (40%), Gaps = 32/275 (11%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
            G LV A +  +    L   F   F G +    +  D   +  +    F   Q + ARI+ 
Sbjct: 347  GQLVAARVRNVLSDGLLCSFLTYFSGTVDPFHLGAD---LAADWRKQFSPNQRLRARIL- 402

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1049
                P  K+     L++   +++ S   +  +  + DV  G  V+G V +V+    L+ +
Sbjct: 403  -YVDPASKR---VALTLHRHLISASLPVNFPMLGQVDVRPGMPVSGTVSRVEEYGLLVAL 458

Query: 1050 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1109
            +  ++A + +L ++   +   +  R+F  G+ V G VL+++   K + + L+P   G   
Sbjct: 459  TSSIRALVPVLHASDVGTA--KALRKFKAGQTVAGKVLTVDPATKKVTMTLKPSLVGSKL 516

Query: 1110 KTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSD 1167
              +  + D          + GGR   +++G    G+ V     + G  H +E        
Sbjct: 517  PPIARTQDA---------VPGGRSHGVVTGARDFGVFVSFFGGVTGLAHVSE-------- 559

Query: 1168 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
               G    Q  P   +  GQ VKC+VL    + +G
Sbjct: 560  --CGLAADQ-KPPEAFQAGQVVKCRVLGADPSRKG 591


>gi|239793504|dbj|BAH72864.1| ACYPI004236 [Acyrthosiphon pisum]
          Length = 346

 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 170/292 (58%), Gaps = 5/292 (1%)

Query: 1506 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1565
            N    +KK++E R +++  AE   +E+D P  PD +ERL+  +P SSF+W+KYMAF L  
Sbjct: 52   NQWREEKKQREIRNRKLE-AELIQIERD-PLNPDHYERLLLDNPGSSFIWMKYMAFYLHT 109

Query: 1566 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1625
             ++E AR+ A+RAL TI+ REE EKLN+W A    E  YGN  +E+  +    AL+  D 
Sbjct: 110  RNLETARATAKRALTTIDAREEIEKLNVWTALLIAEELYGN--KESFKQTMNEALRSNDE 167

Query: 1626 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR-RVQRLLKQQQEGVQAVVQR 1684
              V++ +L ++E +   K  D+   K+I KF  S   +LR  +      + +  + ++Q+
Sbjct: 168  YMVYIKILEIFEESNVLKGLDKFTSKIITKFSDSLDAYLRCAIMYFRLNKSDQARLILQK 227

Query: 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
            A+ +LP   H+  IS+ A+LE   G  +  +++FE +L+ YP R ++ S+Y+D  ++   
Sbjct: 228  AISNLPTKSHVIMISKFALLENHVGSKEEAQTLFEHVLTCYPSRINVLSLYVDMLVKSNK 287

Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            +DL R   ERA + +L P+KM  LF K+L+ EK  G  E ++ VK     YV
Sbjct: 288  IDLARHALERATTQTLAPRKMNSLFNKWLKLEKKHGTFESVDKVKICMNNYV 339


>gi|195389266|ref|XP_002053298.1| GJ23416 [Drosophila virilis]
 gi|194151384|gb|EDW66818.1| GJ23416 [Drosophila virilis]
          Length = 1397

 Score =  177 bits (449), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/295 (37%), Positives = 165/295 (55%), Gaps = 11/295 (3%)

Query: 1510 AKKKEKEE--REQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1566
            AK+K K E   EQ +R  EER  + +  P T D+FERLV + PNSS  WI+YM+F+LS  
Sbjct: 1102 AKEKAKAEVKEEQRLREIEERNADPNQRPETIDQFERLVLAEPNSSKSWIQYMSFLLSNT 1161

Query: 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626
            +V+KAR IA RA++TI  RE  E  NIW A  NLE  Y +   + V+K    AL + DP 
Sbjct: 1162 EVDKAREIARRAIKTIAFRETKELRNIWTALINLELSYNSSNFDDVLK---EALSHNDPL 1218

Query: 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR---LLKQQQEGVQAVVQ 1683
            + +L L+ + +     +     L  + +KF+   +VW  RV           + VQ  +Q
Sbjct: 1219 ETYLNLVEVLKSHNLRERLVSTLNLITRKFRTEPQVW--RVTADAYFWLGMADRVQPTLQ 1276

Query: 1684 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1743
            RAL  LP+++HI  I   A L  +N      +++ + I++ YPKR D+W +Y+D  I+  
Sbjct: 1277 RALSVLPKNQHINCIVAFAKLYAQNDDNAMAQTLLDDIVTSYPKRIDIWVLYVDMLIKSE 1336

Query: 1744 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             ++  R + ERA+   L P KM  ++KKYL++E   G E     VKQ A +YV+S
Sbjct: 1337 LIESARNVLERAVLQKLQPDKMLVIYKKYLDFEMKHGTEANAARVKQLAEQYVQS 1391



 Score =  106 bits (265), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 128/532 (24%), Positives = 234/532 (43%), Gaps = 53/532 (9%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP---ILDNEI--EANEDNLLPTIFHV 55
           M + GVV   +   L I LPG +   A  AD  D    +  + +  + +E + L  +F V
Sbjct: 72  MLVMGVVKAADATSLQIALPGRMTARALVADISDAYARVAQSYMAGDGSEYHDLTVLFSV 131

Query: 56  GQLVSCIVLQLDDDKKEIGKRK---IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 112
           GQ+V    +     K EI +R    + LSL+ + +   L   ++++G + T  ++ I++H
Sbjct: 132 GQIVYGRAI-----KTEIPERNRMSLLLSLKPAEVNSSLHHASIKKGFIFTGAIEEIQEH 186

Query: 113 GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-----TRKVVYLSSDPD 167
           G ++  G+     F+P  + A+   I    G L+   V+ I       T + V L  D  
Sbjct: 187 GCVIETGIEGLQAFVPIADAAQQHHI----GQLIFLKVKQIQHSSAKSTCQCVRLDQD-- 240

Query: 168 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPT 226
              K   K     ++D ++PG +V  +V   L+NG+  S +   F G V+  HL     T
Sbjct: 241 ---KLKIKSQNETNLDYILPGSIVKFKVIKHLKNGLEGSIMNESFRGYVNEHHLAEALHT 297

Query: 227 TNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--------PYLLHNRAPPSHVKVGDIYD 278
                DY  +++  AR+L+V P ++ V LTLN           + +      +K G I +
Sbjct: 298 P---PDYELNEEYLARVLYVMPLTKLVYLTLNLDINVTTEKTAMEDDEQQELLKKGSIVE 354

Query: 279 QSKVVRVDR-GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 337
           +++V+R    G+ LLL+     + +   +  +     +   +  KY   S  +VR+LG+ 
Sbjct: 355 KARVLRHGTGGIVLLLNHKHKGLISYGSIKSNHKGNYDQDVVLAKYSSKSKHKVRVLGYD 414

Query: 338 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS-FGAIVQFPGGVKALCPLPH 396
            +E L      A+     ++T  D++ G +V+ +++  +S  G      G V  +    H
Sbjct: 415 VIESLYYCTDDANILNEKLYTLEDLQAGDIVQARIVKPESKIGGYNVKIGKVNGIIEQLH 474

Query: 397 MSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLI 454
           ++      P  +++VG  L  RVL +   R    ++++   +   + +L+S   A    +
Sbjct: 475 LA------PNMRYEVGQRLRCRVLDICLDRKICYLSNRNEYLNKSVKLLTSLQSAQPGSL 528

Query: 455 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 506
             G + K E     V+F +G++G   +  L         S +  GQ  K RI
Sbjct: 529 FTGTVVKCESSYVLVKFCSGIKGVLHKQRLNE----LIESTFFAGQTTKFRI 576


>gi|401421286|ref|XP_003875132.1| rRNA biogenesis protein-like protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
 gi|322491368|emb|CBZ26637.1| rRNA biogenesis protein-like protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 738

 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 161/294 (54%), Gaps = 29/294 (9%)

Query: 1525 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1584
            A ER +E   P +P+EF+RL+ ++PNSS++W +YMA+ + +   E AR +AE+AL TI +
Sbjct: 442  AYERGMETAVPTSPEEFQRLLLANPNSSYIWTQYMAYHVGLQQYEAARQVAEKALSTIGV 501

Query: 1585 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1644
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 502  REQEELLNVWVAYLNIENLYGT--EESLSAVFRRAQQR------QLNQLTLFERLADIYA 553

Query: 1645 ADE-------LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRHK 1693
            A         L   M  KF+   + W R    L+ Q   G +  ++R L      L R  
Sbjct: 554  ASRKPNQLLALCRAMTGKFRTERRTWERLGIVLVDQ---GKRDQLKRTLKDMGDVLKRDD 610

Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVD 1746
                I   AI E+K+G  + GR++FEG+L + PKR+D+W+ Y DQE+ L           
Sbjct: 611  ATLAIVHIAIHEYKHGSPENGRALFEGLLRKVPKRSDVWATYTDQEMGLLNRKDPTASTL 670

Query: 1747 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
             +R +F+R ++++   K M+ +  ++L +EK  G    +E VK+ A  YV+S +
Sbjct: 671  QVRQIFQRTVAMNFSAKVMQQVLTRFLSFEKLHGTPADVESVKKCARTYVDSKI 724


>gi|406693939|gb|EKC97279.1| rRNA processing-related protein [Trichosporon asahii var. asahii
           CBS 8904]
          Length = 1499

 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 168/636 (26%), Positives = 294/636 (46%), Gaps = 43/636 (6%)

Query: 94  ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG------FLPRNNLAENSGIDVKPGLLLQ 147
           + V++G  +   V   ED GY +  GL + TG      F+P   + +N+G  + PG L+ 
Sbjct: 241 QDVEKGYRIVGEVLGAEDKGYRVGLGLSADTGLAGVEGFIPIEEVEKNAGGALIPGQLIP 300

Query: 148 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 207
            VV  +    +VV L+ DP T+      ++  I    L+PG + S  V +++ +G+ +  
Sbjct: 301 TVVSEVKAGGRVVKLTLDPQTLIHSSLTEVSNIGS--LLPGQLASCLVTAVVPSGLNVKI 358

Query: 208 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYLLHNR 265
             ++ GT+DI HL       + ++ YN  KK+ ARIL+  V  + R   L+  P++ +  
Sbjct: 359 CGFYDGTIDIAHL--GLGEDDIEDRYNIGKKIKARILYDTVASSERRFALSALPHIFNLA 416

Query: 266 APPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 316
           +P +          + VG      KV+RV    G++     T      +  IS +++E V
Sbjct: 417 SPVAADGETPLEIAIPVGKTLPSVKVIRVIPDWGVVC---RTDDGLEGFTHISHLSDERV 473

Query: 317 RKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
             L     ++K G+  R R++G   L+G+     +      +     ++  G V+KG V 
Sbjct: 474 PTLSNSTGQFKVGTYHRARVIGHSPLDGVMLLSFEEKVLNQVFMQVGELTIGQVLKGTVR 533

Query: 374 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTH 431
            +   G  V   G V  +    H ++  +  P K+FKVGA +  RV  ++    R+ +T 
Sbjct: 534 KLSDKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVGASVKARVFAIEPARNRVVLTL 593

Query: 432 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 491
           KK+LV+S L +  S+A+ T   IT   ++KI   GC V  + G++ F P+SE   +    
Sbjct: 594 KKSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVAN 653

Query: 492 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMK-PTRVSEDDLVKLGSLVSGVVDVVTPNA 550
            + ++ VG+ V  RI      S+++  S     PT V+ + L ++GS VSG+V  +    
Sbjct: 654 LNDVFFVGKAVNVRITDVDEHSQKLVASVRQALPTAVAAEKL-EVGSDVSGIVAQIHAEQ 712

Query: 551 VVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NESSNLLL--- 605
           VVV +I    +   +   +L++H       ++  +K G + + L+V+  N +S L++   
Sbjct: 713 VVVTLIPSQLT-ALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVAN 771

Query: 606 -SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
             AK  +         +   I    V+ G V +    G  VR   ++ G    + A D  
Sbjct: 772 KRAKKGIPTGISTPARNFDAIAVGDVLPGRVISKTPQGAMVRLGKKIRGRVAPTDASD-- 829

Query: 665 RADLSKT-YYVGQSVRSNILDVNSETGRITLSLKQS 699
             DLS     V   V   +L V++E+  I LS ++S
Sbjct: 830 --DLSAPGLKVDDDVLCCVLKVDAESRAIDLSTRKS 863



 Score =  133 bits (335), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 149/561 (26%), Positives = 250/561 (44%), Gaps = 92/561 (16%)

Query: 875  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-AISETETSSSKRAKKKSSYDVGSLV 933
            K P+K+F  G SV A V A+  +    R++L LK ++ E++               GS  
Sbjct: 563  KHPEKRFKVGASVKARVFAIEPARN--RVVLTLKKSLVESDLPVP-----------GSFA 609

Query: 934  QAEITEIKPLELRLKFGIG-----FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
                 EI P  +      G     F G       ++  +N V NL   F +G+ V  RI 
Sbjct: 610  DVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRIT 669

Query: 989  AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1048
                  D+ +     ++     L  +    KL        +G  V+G V ++  E  ++T
Sbjct: 670  ------DVDEHSQKLVASVRQALPTAVAAEKL-------EVGSDVSGIVAQIHAEQVVVT 716

Query: 1049 -ISRHLKAQLFILD-SAYEPSELQEFQRRFHIGK-----------AVTGHVLSINKEKKL 1095
             I   L A L + + S +    + E ++   +G+           A +G ++  NK  K 
Sbjct: 717  LIPSQLTALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVANKRAK- 775

Query: 1096 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR-ISKILSGVGGLVVQIGPHLYGR 1154
                 +    GIS    +         I  GD++ GR ISK   G    +V++G  + GR
Sbjct: 776  -----KGIPTGISTPARNFDA------IAVGDVLPGRVISKTPQGA---MVRLGKKIRGR 821

Query: 1155 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1214
            V  T+      SD LS           G      V C VL++    R    ++LS R S 
Sbjct: 822  VAPTD-----ASDDLSA---------PGLKVDDDVLCCVLKVDAESRA---IDLSTRKS- 863

Query: 1215 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1274
                  +S+    D +     +    DL     V+G VKNV   G F+ L R + A+V++
Sbjct: 864  --RVQPDSAPAIVDAE-----INSTADLKAGQSVRGIVKNVAPNGLFVALGRSVTARVMI 916

Query: 1275 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1334
              L D +V+  +  F +G +V+G++LSV     RVE+TL+T   +  +++++  L++   
Sbjct: 917  KELFDDFVKDWKARFAVGDVVSGKILSVG--DDRVEMTLRTKPRKAGAETKL-TLADFKE 973

Query: 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKIL 1391
            G  V   +KRVES+GLF+ I+ +++ GLCH SE+S++   ++      +R  + V+  I 
Sbjct: 974  GQKVEATVKRVESFGLFLRIDGSDVSGLCHRSEISDNKKQDVSQALKGFREKDHVRAVIT 1033

Query: 1392 KVDKEKRRISLGMKSSYFKND 1412
             +DKEK +I+  +K+S+F +D
Sbjct: 1034 SIDKEKGKINFSIKASHFSDD 1054



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 119/264 (45%), Gaps = 22/264 (8%)

Query: 459 ITKIEKHGCFVRFYNGVQGFAPRSELGLD--PGCEPSS-MYHVGQVVKCRIMSSIPASRR 515
           I  I   G   R  +G++GF   S L  +  P    S+  + VG   + R++   P    
Sbjct: 443 IRVIPDWGVVCRTDDGLEGFTHISHLSDERVPTLSNSTGQFKVGTYHRARVIGHSPLDGV 502

Query: 516 INLSFMMKP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
           + LSF  K       +V E   + +G ++ G V  ++   + V V  +G   G +   H 
Sbjct: 503 MLLSFEEKVLNQVFMQVGE---LTIGQVLKGTVRKLSDKGLFVNV--QGNVDGVVWPLHY 557

Query: 571 AD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 626
           AD    H E    + + +K      ++  ++   + ++L+ K SL+ S   +P   + + 
Sbjct: 558 ADIRLKHPEKRFKVGASVKA-----RVFAIEPARNRVVLTLKKSLVESDLPVPGSFADVT 612

Query: 627 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 686
              +    V  I++ GC V   G L  F P+S+A     A+L+  ++VG++V   I DV+
Sbjct: 613 AGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVD 672

Query: 687 SETGRITLSLKQSCCSSTDASFMQ 710
             + ++  S++Q+  ++  A  ++
Sbjct: 673 EHSQKLVASVRQALPTAVAAEKLE 696



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 87/166 (52%), Gaps = 8/166 (4%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            ++ +L+   +++G V+ ++ KG F+ +   +D  V   + +D  ++ PEK F +G  V  
Sbjct: 518  QVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVGASVKA 577

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEI---NNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            RV ++EP   RV +TLK    ++  +S++    + +++  G+I    + ++   G  + +
Sbjct: 578  RVFAIEPARNRVVLTLK----KSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDL 633

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
                L      SE S ++V N+  ++  G+ V V+I  VD+  +++
Sbjct: 634  FG-GLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVDEHSQKL 678



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 118/539 (21%), Positives = 209/539 (38%), Gaps = 125/539 (23%)

Query: 952  GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1011
            G  G  HI+ ++D++   + N    FK+G    AR+I  S    +    L  LS +  +L
Sbjct: 458  GLEGFTHISHLSDERVPTLSNSTGQFKVGTYHRARVIGHS---PLDGVML--LSFEEKVL 512

Query: 1012 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1071
                  +++  +  +++IGQ + G V K+ ++   + +  ++   ++ L   Y    L+ 
Sbjct: 513  ------NQVFMQVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLH--YADIRLKH 564

Query: 1072 FQRRFHIGKAVTGHVLSINKEKKLLRLVLR--------PFQDGISDKTVDISNDNMQTFI 1123
             ++RF +G +V   V +I   +  + L L+        P     +D T            
Sbjct: 565  PEKRFKVGASVKARVFAIEPARNRVVLTLKKSLVESDLPVPGSFADVTA----------- 613

Query: 1124 HEGDIVGGRISKILSG------VGGLVVQIGPHLYGRVHFTELKNI-----CVSDPLSGY 1172
              G+I    +SKIL         GGL   +        +   L ++      V+  ++  
Sbjct: 614  --GEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDV 671

Query: 1173 DEGQFDPLSGYDEG--QFVKCKVLEISRTVRG---TFHVE----LSLRSSLDGMSSTN-- 1221
            DE     ++   +     V  + LE+   V G     H E      + S L  + S    
Sbjct: 672  DEHSQKLVASVRQALPTAVAAEKLEVGSDVSGIVAQIHAEQVVVTLIPSQLTALLSLANL 731

Query: 1222 SSDLSTDVDTPGKHL---EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1278
            S+     VD   K L   EK+EDL   ++V    KN TS    I+++ K   K + + +S
Sbjct: 732  SNHRGMGVDELRKSLKVGEKLEDL---VVVS---KNATS--GLIIVANKRAKKGIPTGIS 783

Query: 1279 DGYVESPEKEF---PIGKLVAGRVLSVEP------LSKRVE------------------- 1310
                 +P + F    +G ++ GRV+S  P      L K++                    
Sbjct: 784  -----TPARNFDAIAVGDVLPGRVISKTPQGAMVRLGKKIRGRVAPTDASDDLSAPGLKV 838

Query: 1311 -----------------VTLKTSDSRTASQS-------EINNLSNLHVGDIVIGQIKRVE 1346
                             + L T  SR    S       EIN+ ++L  G  V G +K V 
Sbjct: 839  DDDVLCCVLKVDAESRAIDLSTRKSRVQPDSAPAIVDAEINSTADLKAGQSVRGIVKNVA 898

Query: 1347 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              GLF+ +   ++     + EL +D V + +  +  G+ V  KIL V  ++  ++L  K
Sbjct: 899  PNGLFVAL-GRSVTARVMIKELFDDFVKDWKARFAVGDVVSGKILSVGDDRVEMTLRTK 956



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 104/553 (18%), Positives = 221/553 (39%), Gaps = 89/553 (16%)

Query: 908  KAISETETSSSKRAK-----KKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 959
            KA +E++ + ++R K     ++ SY     G+LV A +  + PL L +       G I I
Sbjct: 90   KATAESDAAKAERDKDTIRVEELSYKRLVPGTLVLARVHTVLPLHLVVSMPNNLLGHIPI 149

Query: 960  TEVNDDKSNVVE---------------------NLFSNFKIGQTVTARIIAKSNKPDMKK 998
            TEV++  +  +                       L   F+ GQ +  R+I  +  P   +
Sbjct: 150  TEVSNTLTAALNADIDAMSEDEDEEDEEKEGAPELTDIFRPGQYIPTRVI--NTFPTASQ 207

Query: 999  SFLWELSIKPSMLTVSEIGSKLLFEEC-------DVSIGQRVTGYVYKVDNEWALLTISR 1051
            +F+ +  +  +    + +    + E+        DV  G R+ G V   +++   + +  
Sbjct: 208  AFIAQYPVSETTRLAARVELTAVPEKINLDVAKQDVEKGYRIVGEVLGAEDKGYRVGLGL 267

Query: 1052 HLKAQLFILDSAYEPSELQEFQRRFHI-GKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
                 L  ++      E+++      I G+ +   V  +    ++++L L P Q  I   
Sbjct: 268  SADTGLAGVEGFIPIEEVEKNAGGALIPGQLIPTVVSEVKAGGRVVKLTLDP-QTLIHSS 326

Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGV---GGLVVQIGPHLYGRVHFTELKNICVSD 1167
              ++SN         G ++ G+++  L       GL V+I     G +    L       
Sbjct: 327  LTEVSN--------IGSLLPGQLASCLVTAVVPSGLNVKICGFYDGTIDIAHL------- 371

Query: 1168 PLSGYDEGQFDPLSGYDEGQFVKCKVL--EISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1225
                   G+ D    Y+ G+ +K ++L   ++ + R      LS    +  ++S  ++D 
Sbjct: 372  -----GLGEDDIEDRYNIGKKIKARILYDTVASSER---RFALSALPHIFNLASPVAADG 423

Query: 1226 STDVDTP---GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1282
             T ++     GK L  ++           ++ +   G        L+    +S+LSD  V
Sbjct: 424  ETPLEIAIPVGKTLPSVK----------VIRVIPDWGVVCRTDDGLEGFTHISHLSDERV 473

Query: 1283 ES---PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1339
             +      +F +G     RV+   PL     V L + + +  +Q     +  L +G ++ 
Sbjct: 474  PTLSNSTGQFKVGTYHRARVIGHSPLDG---VMLLSFEEKVLNQV-FMQVGELTIGQVLK 529

Query: 1340 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1399
            G ++++   GLF+ ++  N+ G+      ++  + + E  ++ G  VK ++  ++  + R
Sbjct: 530  GTVRKLSDKGLFVNVQG-NVDGVVWPLHYADIRLKHPEKRFKVGASVKARVFAIEPARNR 588

Query: 1400 ISLGMKSSYFKND 1412
            + L +K S  ++D
Sbjct: 589  VVLTLKKSLVESD 601


>gi|224011034|ref|XP_002294474.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969969|gb|EED88308.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 259

 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/257 (41%), Positives = 157/257 (61%), Gaps = 14/257 (5%)

Query: 1550 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1609
            NSS VWIKYMAF LS+AD++ AR++A RA + I  REE EKLN+W A   LE +YGN  +
Sbjct: 1    NSSEVWIKYMAFHLSLADIDSARTVANRAFERIVFREEGEKLNVWTALLTLELKYGN--D 58

Query: 1610 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1669
            +++     RA +  +PK+   + +G  +     K AD++  KM KKFK    VW+   Q 
Sbjct: 59   KSLQATVDRACKQNNPKQA--SSIGSNDLVTSTKRADDMFTKMCKKFKSKKTVWIAHFQY 116

Query: 1670 LLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1728
            LLK  + E   A+++R+L SLP +KH++ +S+ A +EF+ G A+RGR++F  +L ++PKR
Sbjct: 117  LLKGSRHEEAHALLKRSLQSLPNYKHVEVMSKFAQMEFELGSAERGRTIFNALLEKHPKR 176

Query: 1729 TDLWSIYLDQEIRLGDVDLIRGLF---------ERAISLSLPPKKMKFLFKKYLEYEKSV 1779
             DL  + +D+EI+ GD+   R LF         ER        K+MK LFKK+   E+  
Sbjct: 177  MDLLFVNIDKEIKSGDILKARALFDSVVNPVSNERKQKFKFSDKQMKSLFKKWYRMEEEH 236

Query: 1780 GEEERIEYVKQKAMEYV 1796
            G+EE  E VK++A  +V
Sbjct: 237  GDEESQERVKEEARTFV 253


>gi|195035980|ref|XP_001989449.1| GH18799 [Drosophila grimshawi]
 gi|193893645|gb|EDV92511.1| GH18799 [Drosophila grimshawi]
          Length = 1396

 Score =  173 bits (438), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 161/289 (55%), Gaps = 21/289 (7%)

Query: 1520 QEIRAAEERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1578
            Q +R  EER  +    P T D+FERLV + PN+S  WI+YM+F+LS  ++ KAR IA RA
Sbjct: 1113 QRLRKIEERNADPSQQPETIDQFERLVIAEPNNSKSWIQYMSFLLSNTEIVKAREIARRA 1172

Query: 1579 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1638
            ++TI  RE  E  NIW++  NLE  Y +   + V+K    AL + DP + +L L+ + + 
Sbjct: 1173 IKTIAFRETKELRNIWISLINLELSYNSSNFDDVLK---EALSHNDPLETYLNLVDVLKS 1229

Query: 1639 TEQNKLADELLYKMIKKFKHSCKVW---------LRRVQRLLKQQQEGVQAVVQRALLSL 1689
                +     L  +++KF+   +VW         L  V R        VQ  +QRAL  L
Sbjct: 1230 HNLKERLINTLNIIMRKFRTELQVWKVSADAYFWLGLVDR--------VQPTLQRALNVL 1281

Query: 1690 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1749
            P+++HI  I   A L  ++      +++ +GI++ YPKR D+W +Y+D  I+ G ++  R
Sbjct: 1282 PKNQHINCIVAFAKLYAQHEDNAMAQTLLDGIVTSYPKRIDIWVLYVDMLIKSGLIESAR 1341

Query: 1750 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
             + ERA+   L P KM  ++KKYL++E+  G E     VKQ A +YV+S
Sbjct: 1342 NVLERAVLQKLQPDKMLVIYKKYLDFEEKHGTEGNAARVKQLAEQYVQS 1390



 Score = 93.6 bits (231), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 117/525 (22%), Positives = 229/525 (43%), Gaps = 42/525 (8%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARA-----ADALDPILDNEIEANEDNL--LPTIF 53
           M + GVV       L I LPG  R +ARA     +DA   +  + +  ++     L  +F
Sbjct: 72  MLVMGVVKSATATSLQIALPG--RMMARALVADISDAYARVAQSYMGGDDSEYHDLSELF 129

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
             G++V    ++   D++E     + L+L+ + +   L   ++++G + T  ++ I++HG
Sbjct: 130 KEGRIVYGRAMK--TDRQEGKSSTLLLTLKPADVNSSLRHGSIKKGFIFTGAIEEIQEHG 187

Query: 114 YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVVYLSSDPDTVSKC 172
            ++  G+     F+P  ++A+   I     L ++ +  + +R T + + L  D     K 
Sbjct: 188 CVIETGIQGLQAFMPNEDVAQQHHIGELIFLKVKQIQHNAERSTCQCIQLEQD-----KL 242

Query: 173 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKN 231
             K     ++D ++PG +V  +V   L+NG+  S +   F G V+  +L     T     
Sbjct: 243 KIKSQNETNLDYILPGSIVKFKVSKQLKNGLEGSIMNESFRGYVNEHYLSEALYTP---Q 299

Query: 232 DYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVGDIYDQSKVVRVD 286
           DY  +++  AR+L+V P ++ V LT N  +               K G I ++++V+R  
Sbjct: 300 DYEVNEEYLARVLYVMPLTKLVYLTFNLNIGVTAEQEAADEEELPKKGTIVEKARVLRHG 359

Query: 287 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK--LEKKYKEGSCVRVRILGFRHLEGLAT 344
            G G++L +        +Y +I    +    +  +  KY   S   VR+LG+  +E L  
Sbjct: 360 TG-GIILLLNRKHKGLISYSSIKSNFKGNYDQDVVLSKYSNKSKHTVRVLGYDVIESLYY 418

Query: 345 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS-FGAIVQFPGGVKALCPLPHMSEFEIV 403
                +     ++   D+  G +V  +++  DS  G      G V  +     ++     
Sbjct: 419 CTDNPNVVNEKLYMLDDLLAGDIVSARIVKPDSKIGGYCVKIGNVNGIIEQMQLA----- 473

Query: 404 KPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 461
            P   +++G  L  RVL + ++R    ++++   +     +L++   A    +  G + K
Sbjct: 474 -PNVHYEIGQCLRCRVLDICTERKICYLSNRSEYLSKSAKLLTTLQSAHSGNLFTGTVVK 532

Query: 462 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 506
            E     V+F NG++G   +  L    G   ++ +  GQ  K RI
Sbjct: 533 CEPTYILVKFCNGLKGVLHKQRLN---GLMEATFFE-GQTTKFRI 573


>gi|328874880|gb|EGG23245.1| hypothetical protein DFA_05377 [Dictyostelium fasciculatum]
          Length = 822

 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 143/545 (26%), Positives = 250/545 (45%), Gaps = 45/545 (8%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------------ 48
           M L G    V +  +V+ LP G+RG  +  +  D          +DN+            
Sbjct: 193 MVLLGAFEMVTDSFIVVSLPFGIRGYVKFNEISDEFTKWSNSVMKDNIKYKSNFQKTDSI 252

Query: 49  ---LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAY 105
              + T+F  G L+   V+ + D KK    + +  +LR  ++ K  ++    EGM +   
Sbjct: 253 LERIKTMFIKGHLLKVAVMGISDMKK----KGLLCTLRPEVINKESNIGNFTEGMNIYGS 308

Query: 106 VKSIEDHGYILHFGLP-SFTGFLPRNNL-----AENSGIDVKP--------GLLLQGVVR 151
           V+S++D GYI+ FG      GFL   +         S +D           G  L+  + 
Sbjct: 309 VQSVQDKGYIISFGSGFEHKGFLKFEDTKFYWPTTTSNVDASTATETTLSVGQPLECNIL 368

Query: 152 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 211
           +I  + K+V +S     VS+  TKD   I+   +  GM+V   + ++ +NG+ + FL +F
Sbjct: 369 TISESPKIVSVSVSHFLVSRATTKDSTAITAQSIKAGMLVEGTISAVYDNGLQVRFLEFF 428

Query: 212 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-SH 270
            G +  FH+    P T    D+ + + + ARI+ VD   + + L+L  + L  R  P + 
Sbjct: 429 AGDIHQFHVDR--PLT----DFQEGRTLKARIISVDHEKKRIHLSLLSHCLGLRPFPFNT 482

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 330
           +K+GDI+ +  +V+      +LL +P    S    +  +   E     L+ K+  GS + 
Sbjct: 483 LKIGDIFHKDIIVKKVDTHEILLSLPD-EFSKVKGLLHNTQTENNKESLKGKFNVGSELH 541

Query: 331 V--RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 388
           V  R+    +L+ + T   K       ++++ D++PG ++ G +  V      ++    +
Sbjct: 542 VPCRVKHVDYLDAMVTLTTKKKEIGKTIYSYYDLQPGQILDGTIKFVRDDSIEIKITDNI 601

Query: 389 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSY 446
             + P+ ++ E  I+KP ++F  G  L FR+L V  + KR+ +T K +LV S L ILSS 
Sbjct: 602 FGVVPMHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKPSLVHSTLPILSSK 661

Query: 447 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 506
           A      I  G+I++IE     V F+  V G   RS++   P    S  + +GQVV  + 
Sbjct: 662 AACKVGEIAQGFISRIEDERIHVTFFGDVHGIVDRSQMSRTPITMISEHFQIGQVVTTKT 721

Query: 507 MSSIP 511
           +   P
Sbjct: 722 LQVNP 726



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 1214 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1273
            LD M +     L+T     GK +    DL P  I+ G +K V      I ++  +   V 
Sbjct: 552  LDAMVT-----LTTKKKEIGKTIYSYYDLQPGQILDGTIKFVRDDSIEIKITDNIFGVVP 606

Query: 1274 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1333
            + NL +  +  P + F  G+ +  R+L V P  KR+ +TLK S    ++   +++ +   
Sbjct: 607  MHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKPSLVH-STLPILSSKAACK 665

Query: 1334 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1393
            VG+I  G I R+E   + +T    ++ G+   S++S   +  I   ++ G+ V  K L+V
Sbjct: 666  VGEIAQGFISRIEDERIHVTFFG-DVHGIVDRSQMSRTPITMISEHFQIGQVVTTKTLQV 724

Query: 1394 DKEKRRISLGMKSSYFKNDADNLQ 1417
            + +   ++L + ++ ++   +++Q
Sbjct: 725  NPKGLFLTLIIDNADYQQYLNSIQ 748



 Score = 44.3 bits (103), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 157/390 (40%), Gaps = 51/390 (13%)

Query: 188 GMMVSTRVQSILENGVMLSFLTYF--TGTVDIFHLQNTFPTTNWKNDYNQH--------K 237
           GM +   VQS+ + G ++SF + F   G +     +  +PTT    D +          +
Sbjct: 302 GMNIYGSVQSVQDKGYIISFGSGFEHKGFLKFEDTKFYWPTTTSNVDASTATETTLSVGQ 361

Query: 238 KVNARILFVDPTSRAVGLTLNPYLLHNRAP--------PSHVKVGDIYDQSKVVRVDRGL 289
            +   IL +  + + V ++++ +L+ +RA            +K G + + +     D GL
Sbjct: 362 PLECNILTISESPKIVSVSVSHFLV-SRATTKDSTAITAQSIKAGMLVEGTISAVYDNGL 420

Query: 290 GL-LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 348
            +  L+  +            D+ +  V +    ++EG  ++ RI+   H +      L 
Sbjct: 421 QVRFLEFFA-----------GDIHQFHVDRPLTDFQEGRTLKARIISVDHEKKRIHLSLL 469

Query: 349 ASAFEGLVFTHSDVKPGMVVKGKVIA--VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 406
           +       F  + +K G +    +I   VD+   ++  P     +  L H ++ E  K  
Sbjct: 470 SHCLGLRPFPFNTLKIGDIFHKDIIVKKVDTHEILLSLPDEFSKVKGLLHNTQTENNKES 529

Query: 407 --KKFKVGAELVF--RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
              KF VG+EL    RV  V      +T+T KK   K     + SY +     I  G I 
Sbjct: 530 LKGKFNVGSELHVPCRVKHVDYLDAMVTLTTKK---KEIGKTIYSYYDLQPGQILDGTIK 586

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
            +      ++  + + G  P   LG     +P   ++ GQ ++ RI+  +P  +R+ L+ 
Sbjct: 587 FVRDDSIEIKITDNIFGVVPMHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLT- 645

Query: 521 MMKPTRV-------SEDDLVKLGSLVSGVV 543
            +KP+ V       S     K+G +  G +
Sbjct: 646 -LKPSLVHSTLPILSSKAACKVGEIAQGFI 674



 Score = 43.9 bits (102), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 153/368 (41%), Gaps = 43/368 (11%)

Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
           +A+  +    T   +K GM+V+G + AV   G  V+F            + +F + +P  
Sbjct: 388 RATTKDSTAITAQSIKAGMLVEGTISAVYDNGLQVRFLEFFAG-----DIHQFHVDRPLT 442

Query: 408 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL--ITHGWIT--K 461
            F+ G  L  R++ V  + KRI ++     + S    L  +   T ++  I H  I   K
Sbjct: 443 DFQEGRTLKARIISVDHEKKRIHLS-----LLSHCLGLRPFPFNTLKIGDIFHKDIIVKK 497

Query: 462 IEKHGCFVRF---YNGVQGFAPRSELGLDPGCEPSSMYHVGQV--VKCRIMSSIPASRRI 516
           ++ H   +     ++ V+G    ++   +        ++VG    V CR+         +
Sbjct: 498 VDTHEILLSLPDEFSKVKGLLHNTQTENNKESLKGK-FNVGSELHVPCRVKHVDYLDAMV 556

Query: 517 NLSFMMK---PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
            L+   K    T  S  DL + G ++ G +  V  +++ + +    +  G +P  +L + 
Sbjct: 557 TLTTKKKEIGKTIYSYYDL-QPGQILDGTIKFVRDDSIEIKITDNIF--GVVPMHNLGET 613

Query: 574 LEHATVMKSVIKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 626
           +        ++KP   F+       ++L +  E   L+L+ K SL++S   + S  +   
Sbjct: 614 M--------ILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKPSLVHSTLPILSSKAACK 665

Query: 627 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 686
              +  G++  I +    V F G + G   RS+        +S+ + +GQ V +  L VN
Sbjct: 666 VGEIAQGFISRIEDERIHVTFFGDVHGIVDRSQMSRTPITMISEHFQIGQVVTTKTLQVN 725

Query: 687 SETGRITL 694
            +   +TL
Sbjct: 726 PKGLFLTL 733


>gi|82793865|ref|XP_728209.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
 gi|23484449|gb|EAA19774.1| rrp5 protein homolog [Plasmodium yoelii yoelii]
          Length = 437

 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 160/286 (55%), Gaps = 29/286 (10%)

Query: 1538 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1597
            P ++E+L+ S  N S +WI Y+ + L   ++++AR++AERAL+TI+I    EKLNI++ Y
Sbjct: 151  PYDYEKLLVSEKNKSTIWISYIVYYLEKGNIQEARNVAERALKTIDIHLIEEKLNIYLCY 210

Query: 1598 FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1657
             N+E  YG+   E    +F+RAL   + K ++L  + + +  ++     EL  + IKKFK
Sbjct: 211  INMECAYGDNLNE----IFKRALLVNNEKSIYLHTMNILKMNKKYNELKELCEEAIKKFK 266

Query: 1658 HSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1715
            +S K+W R ++ L      +E    ++ ++L +LP+ KH+  I   A  E+K    +RG+
Sbjct: 267  YSKKIWTRYLELLHNTLNDEEYAHNILLKSLHALPKRKHLNIIINAARFEYKYSNIERGK 326

Query: 1716 SMFEGILSEYPKRTDLWSIYLDQEIR-----------------------LGDVDLIRGLF 1752
            + FE ++ EYPKR+D+W  YLD  I                        L ++  IR +F
Sbjct: 327  NYFEKLIQEYPKRSDIWFTYLDIHINSLTKGKKNENDDENKKKKIKKLTLNELQFIRNIF 386

Query: 1753 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            ER +S+    + MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 387  ERFLSIKFKTRVMKMIFTKWLLFEKNHGSVNTQKMVQKKAYDYVES 432


>gi|270007539|gb|EFA03987.1| hypothetical protein TcasGA2_TC014136 [Tribolium castaneum]
          Length = 1062

 Score =  171 bits (434), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 178/304 (58%), Gaps = 17/304 (5%)

Query: 1509 HAKKKEK---EEREQEIRAAEERL--LEKD------APRTPDEFERLVRSSPNSSFVWIK 1557
             +KKK+K    ER +  +  EER+  +E +       P++ ++F+RL+ ++PNSS +W++
Sbjct: 758  QSKKKKKLTPAERAEIAKKEEERISKIENELADSTIPPQSAEQFDRLLLANPNSSKLWLQ 817

Query: 1558 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1617
            YM+  ++  +++KAR++ +RAL TIN+    EK N+W+A  NLEN YG   +E+  K F+
Sbjct: 818  YMSMHIATTELDKARAVGKRALDTINMTLVKEKYNVWIALLNLENMYGT--KESFDKTFE 875

Query: 1618 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR--RVQRLLKQQQ 1675
             A++  D  +++L ++ +   + + +  +E + K+  K K + K+WL   R+   L Q +
Sbjct: 876  EAVRCNDSLEIYLNVIQMLATSGKLQEMEEKIKKVRAKEKQNTKMWLEISRIYYSLGQFK 935

Query: 1676 EGVQAVVQRALLS-LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1734
            E  + V + AL S L + +    I +  I+EF+ G  D+  + FE IL  YP + ++W I
Sbjct: 936  EA-RNVKESALKSILDKKRQFDLIVKFGIMEFQLGELDQAVANFETILDTYPSKVNIWII 994

Query: 1735 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794
            Y+DQ +R  + +  R   ERAIS     K MK LF+K++ +E+  G  E +E +K KA E
Sbjct: 995  YVDQLVRKKNFEAARKTLERAISQKFAMKTMKVLFQKFISFEEQYGSPESVEDIKSKAKE 1054

Query: 1795 YVES 1798
            Y+ S
Sbjct: 1055 YLAS 1058



 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 183/416 (43%), Gaps = 27/416 (6%)

Query: 180 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND-YNQHKK 238
           +SI  L+PGM V   V+ IL +G+           VD      TF  +  K +   + K 
Sbjct: 5   LSISDLIPGMKVDFFVEEILPHGIKGQLAENCYAYVD-----ETFTFSRIKKERIKEGKS 59

Query: 239 VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 298
           + A +LFV+P ++   L+L       + P   + +G +     +  V +GL L L+   T
Sbjct: 60  IPAYVLFVEPVTKVTYLSLRGL---EKLPEPELTIGQVCSAQILYNVPKGLYLQLNQTET 116

Query: 299 PVSTPAYV--TISDVAEEE-VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGL 355
              +   +  T+   A+ + V  + KKY  GS  + R+L + H++ L     +    +  
Sbjct: 117 GFISNKRLLKTLPKGADVDIVSAIRKKYPNGSRHQCRVLDYNHMQQLYICTFEKQVIKEK 176

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFKVGAE 414
           +FT SD+K G  V  +V  V + G I +  G V+   P   +S  +  +  K KF VG  
Sbjct: 177 IFTVSDLKIGQAVTAQVTKVVTNGLITKV-GHVQGFVPNLQLSNAKFTQNIKAKFTVGMT 235

Query: 415 LVFRVLGVKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITHGWITKIEKHGCFVRFY 472
           +  RVL +    + +T K+ LV+S   LA L      +  +   G++ +++  G  V FY
Sbjct: 236 VNARVLNITDGNVILTLKQGLVESDKCLATLEQLIPCSQYV---GFVVQVKVAGALVAFY 292

Query: 473 NGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 529
             ++G+     L         +P   + +GQVV   ++      +   L   +   +   
Sbjct: 293 GDIKGWISNRVLNHASSGHYLDPREYFFIGQVVTVWVL----GIKNDKLHLSLNAPKGQN 348

Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 585
              +K+G   +G V  +  + + V  ++    K TIP  HL+ +L    V+ ++++
Sbjct: 349 KHKIKIGQTDNGSVTKIHSDGLDVK-LSNYEVKATIPLAHLSTNLSLCPVLLTILQ 403


>gi|340503389|gb|EGR29983.1| programmed cell death 11, putative [Ichthyophthirius multifiliis]
          Length = 2032

 Score =  171 bits (432), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 331/1508 (21%), Positives = 624/1508 (41%), Gaps = 217/1508 (14%)

Query: 22   GLRG------LARAADALDPILDNEIEANEDNLLPTIFHVGQ-LVSCIVLQLDDDKKEIG 74
            GL+G      L+R   A   I D   E NE++ L  I++ G+ L+  IV  + +    I 
Sbjct: 137  GLKGQFLIVNLSRNKKAFLTIADAVEEKNEESDL-RIYNQGEYLIGEIVNSIKEGNSNI- 194

Query: 75   KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRN-NL 132
                  S++ S++ +GL    + E M+L   V + E++G  + F     + GFL ++ N+
Sbjct: 195  ------SIKPSVVNEGLQFNEIYENMLLQGKVLTKEEYGIKVVFHTSQQYIGFLKKDKNV 248

Query: 133  AENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID-------- 183
             E+    D++ G +    V   +  +K++YLS    T    + + +   SID        
Sbjct: 249  CEDDQYEDLEEGRVYMFRVEKKENNKKLLYLSLKYTTQE--IKESILNPSIDIEDGSDFH 306

Query: 184  -LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 242
             L  PG +V+  +  +L NG+++ F   F G +   HL N  P +     Y   +++ AR
Sbjct: 307  HLAKPGNLVNCLIIKVLSNGLVVRFFKQFIGFIFEDHLDNNQPES-----YKVKERILAR 361

Query: 243  ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV--GDIYDQS-KVVRVDRGLGLLLDIPSTP 299
            I+  +   + + L+     +  +A     K   GD++ Q  K+ +V  G   L+ I +T 
Sbjct: 362  IIAANFDQKHINLSAKKVHVDLQAFNQSYKYKPGDVFTQGFKIKKVLYGDSYLVKIQNTS 421

Query: 300  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 359
            +           A++E  K  + Y +   ++  I  F H             F   V   
Sbjct: 422  IDNGFLHKNQLHADKESFKEGQNYTKALKLK-EINYFEHFPIFTA----KEEFVKNVKNW 476

Query: 360  SDVKPGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK---FKV 411
            +D++PGMV+  KV  +     + +   V+    +K +    +  +     P  K   FK 
Sbjct: 477  TDLRPGMVLNVKVEKIIQGHQNQYKVKVEINENIKGIIDYLNTQD----HPQSKNLNFKE 532

Query: 412  GAELVFRVLGV--KSKRITVTHKKTLVKS-KLAILSSYAEATDRLITHGWITKIEKHGCF 468
            G  +  R+L V  + K++ +T K+TLV + +  I+ S+          G+I+     G  
Sbjct: 533  GKRVTVRILSVNLEEKKLKLTAKQTLVNAPEDCIIKSWENIQQNNKYLGYISGKTDFGYI 592

Query: 469  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM------- 521
            ++F+N V+G     ++  +   +  + Y +GQ+++  ++   P ++++ LS         
Sbjct: 593  IQFFNNVKGLLTYKDIE-NLNKKNRNDYKIGQILETYVVFINPLNQKLALSLTEKGFQEA 651

Query: 522  --MKPTRVSEDDLVKLGSLVSGVVDV-----------VTPNAVV--VYVIAKGYSKGTIP 566
               K    S   + ++ SL +  V++           V  N +   V V+     K  +P
Sbjct: 652  QNQKKNNTSRKTVFEMQSLNNEDVELNVNEGDICEYKVDSNNIYKDVIVLFNENHKAILP 711

Query: 567  TEHLADHLEHATVMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASHI 625
             EHL+D   H  ++   ++      +  +++   + N+L+SAK SL+++    P+    I
Sbjct: 712  LEHLSDFQWHYEILNEHLRSTKGSLKCKIINIFPNKNVLVSAKASLLSNMN--PNCVEDI 769

Query: 626  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV-GQSVRSNILD 684
                +  GY+      G  V+F  R+  F  +    +  + +   +  V  +++ +N ++
Sbjct: 770  KNGYIYTGYIDRGARKGIVVKFNERIKIFVGKESFEENVQFNTYDSVAVLVKNIENNKIN 829

Query: 685  ---VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 741
               +N    R  +S K S  S+          L  E+ A+LQ         K  + F +G
Sbjct: 830  ATLLNENIFRHKMSKKISFFSN----------LFTEQYAVLQDKNK-----KVWQKFKVG 874

Query: 742  SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------GSVIQAAILDVAK 795
            + +   VH   DFG++   E +  + GFI    L     +       G  IQ  I+D+  
Sbjct: 875  NYLNTTVHIIKDFGIITKIEGNDSLTGFILIEHLMNNEAQQKIEIWEGKKIQCKIIDIDF 934

Query: 796  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEI---VKENYL 852
             + ++DL +   F+   ++  +N+Q   +          G  Q +  I E+   V++N+ 
Sbjct: 935  EKEVLDL-IPVDFLP-LKQLINNKQNLDEFFN-------GNFQNIPIIEEVKVLVEKNHY 985

Query: 853  VLSLPEYNHSIGYASVSDYNTQKFPQKQF----LNGQSVIATVMALPSSSTAGRL----L 904
            ++ + +  + I Y + ++ N  +  +K F     N + V   ++      +  +     L
Sbjct: 986  LICIIQNTNIICYVNTNNINNIQHEKKYFNDKIYNVRLVNKDLLDKKKQQSINKSTYVPL 1045

Query: 905  LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 964
               K I   +           +   G  V  +I + +   L ++     +G++H T+++D
Sbjct: 1046 YEQKVIRREQNQDQINNTSHVNLVPGEKVSGKILKKQGNNLHVQLRGKLYGKLHKTQLDD 1105

Query: 965  DKSNVVENLFSNFKIGQTVTARII-AKSNKPDMKKSFLWELS--IKPSMLTVSEIGSKLL 1021
             K       F  F+  + +  +I+  K N+ ++    L  LS  +K   L  +   S+  
Sbjct: 1106 QKQ------FGKFQENELIQCKILYVKKNEKNIDIE-LTALSCHLKADFLDENNYLSQYE 1158

Query: 1022 FEECDVSIGQRVTGYVYKVDNE-----WALLTISRHLKAQLFILDSAYEP-SELQEFQRR 1075
                + +I Q+  G V  +D       +  LT S       F L     P S L+  + +
Sbjct: 1159 STFQEKNINQKFLGLVKSIDKSSIHPIYVELTNSHSGYVSAFDL-----PFSHLENIEDK 1213

Query: 1076 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1135
            + IG      ++ I + KK L+ + R    GI     ++S         +G ++  +I K
Sbjct: 1214 YSIGNLCDWKIVGIQENKKGLKNI-RLLPAGI-----ELSE------YKQGTLLNVKILK 1261

Query: 1136 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1195
              +  GG+ VQI    +  +H +E   IC        DE +  P   ++ GQ+ K ++LE
Sbjct: 1262 -KNAQGGIRVQISDEKFTNIHISE---IC--------DEWEGVPAEHFESGQYTKGRILE 1309

Query: 1196 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE------KIE--------- 1240
                 R   +V++SLR ++     TN ++    +   G  +E      ++E         
Sbjct: 1310 -----RDDENVQISLRQAV-----TNENNWKKALGPSGNTIEYKKIFQEVEKQGDLRNRL 1359

Query: 1241 ------DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                   L   MI  GY+     KGCF+ +S     +V L  LSD Y+E P+  F   KL
Sbjct: 1360 IKLGQGSLKQGMIFVGYINQTNDKGCFVNISYNTIIRVGLQELSDDYLEKPQISFYKNKL 1419

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFIT 1353
            V GR+  ++   K +E +L+ S  +       N +   + V  +V+G  +   S    + 
Sbjct: 1420 VVGRITDIKQDGK-IEGSLRDSIVKFGFSLNENKIKQGMTVKGVVVGHYQGKAS----VA 1474

Query: 1354 IENTNLVGLCHVSELS---EDHVDNIETIYRAGEKVKVKILKVDKE-KRRISLGMKSSY- 1408
            I+     G     +     E  +  +E +   G +V  K++K +KE K RI LG    Y 
Sbjct: 1475 IQGCKFRGSLDKDDTDFTEEQRMGFVEKLLPLGSQVLAKVIKFEKEPKVRIILGNSQKYI 1534

Query: 1409 --FKNDAD 1414
              F N+ D
Sbjct: 1535 QKFSNEVD 1542


>gi|91082491|ref|XP_972709.1| PREDICTED: similar to programmed cell death protein 11 (pre-rrna
            processing protein rrp5) [Tribolium castaneum]
          Length = 953

 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 178/304 (58%), Gaps = 17/304 (5%)

Query: 1509 HAKKKEK---EEREQEIRAAEERL--LEKD------APRTPDEFERLVRSSPNSSFVWIK 1557
             +KKK+K    ER +  +  EER+  +E +       P++ ++F+RL+ ++PNSS +W++
Sbjct: 649  QSKKKKKLTPAERAEIAKKEEERISKIENELADSTIPPQSAEQFDRLLLANPNSSKLWLQ 708

Query: 1558 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1617
            YM+  ++  +++KAR++ +RAL TIN+    EK N+W+A  NLEN YG   +E+  K F+
Sbjct: 709  YMSMHIATTELDKARAVGKRALDTINMTLVKEKYNVWIALLNLENMYGT--KESFDKTFE 766

Query: 1618 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR--RVQRLLKQQQ 1675
             A++  D  +++L ++ +   + + +  +E + K+  K K + K+WL   R+   L Q +
Sbjct: 767  EAVRCNDSLEIYLNVIQMLATSGKLQEMEEKIKKVRAKEKQNTKMWLEISRIYYSLGQFK 826

Query: 1676 EGVQAVVQRALLS-LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1734
            E  + V + AL S L + +    I +  I+EF+ G  D+  + FE IL  YP + ++W I
Sbjct: 827  EA-RNVKESALKSILDKKRQFDLIVKFGIMEFQLGELDQAVANFETILDTYPSKVNIWII 885

Query: 1735 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794
            Y+DQ +R  + +  R   ERAIS     K MK LF+K++ +E+  G  E +E +K KA E
Sbjct: 886  YVDQLVRKKNFEAARKTLERAISQKFAMKTMKVLFQKFISFEEQYGSPESVEDIKSKAKE 945

Query: 1795 YVES 1798
            Y+ S
Sbjct: 946  YLAS 949



 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 111/496 (22%), Positives = 205/496 (41%), Gaps = 60/496 (12%)

Query: 126 FLPRNNLAENSGIDVKPGLLLQGVVRSIDR----------TRKVVYLSSDPDTVSKCVTK 175
           +  +  L +  G  V+ G+++   +R              T   V +++  D  +  +TK
Sbjct: 22  YQEKKKLLKTCGKRVQDGMVVLACIRRFSNLSVQVEFPGLTYGAVAINNISDVFTASITK 81

Query: 176 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND-YN 234
           +LK  + DL++P             +G+           VD      TF  +  K +   
Sbjct: 82  ELKANN-DLILP-------------HGIKGQLAENCYAYVD-----ETFTFSRIKKERIK 122

Query: 235 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 294
           + K + A +LFV+P ++   L+L       + P   + +G +     +  V +GL L L+
Sbjct: 123 EGKSIPAYVLFVEPVTKVTYLSLRGL---EKLPEPELTIGQVCSAQILYNVPKGLYLQLN 179

Query: 295 IPSTPVSTPAYV--TISDVAEEE-VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA 351
              T   +   +  T+   A+ + V  + KKY  GS  + R+L + H++ L     +   
Sbjct: 180 QTETGFISNKRLLKTLPKGADVDIVSAIRKKYPNGSRHQCRVLDYNHMQQLYICTFEKQV 239

Query: 352 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFK 410
            +  +FT SD+K G  V  +V  V + G I +  G V+   P   +S  +  +  K KF 
Sbjct: 240 IKEKIFTVSDLKIGQAVTAQVTKVVTNGLITKV-GHVQGFVPNLQLSNAKFTQNIKAKFT 298

Query: 411 VGAELVFRVLGVKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITHGWITKIEKHGCF 468
           VG  +  RVL +    + +T K+ LV+S   LA L      +  +   G++ +++  G  
Sbjct: 299 VGMTVNARVLNITDGNVILTLKQGLVESDKCLATLEQLIPCSQYV---GFVVQVKVAGAL 355

Query: 469 VRFYNGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
           V FY  ++G+     L         +P   + +GQVV   ++      +   L   +   
Sbjct: 356 VAFYGDIKGWISNRVLNHASSGHYLDPREYFFIGQVVTVWVL----GIKNDKLHLSLNAP 411

Query: 526 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 585
           +      +K+G   +G V  +  + + V  ++    K TIP  HL+ +L    V+ +  K
Sbjct: 412 KGQNKHKIKIGQTDNGSVTKIHSDGLDVK-LSNYEVKATIPLAHLSTNLSLCPVLLTNAK 470

Query: 586 PG---------YEFDQ 592
            G         Y FD+
Sbjct: 471 IGSVVEGVVLDYNFDE 486


>gi|281206551|gb|EFA80737.1| hypothetical protein PPL_06323 [Polysphondylium pallidum PN500]
          Length = 926

 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 139/547 (25%), Positives = 251/547 (45%), Gaps = 57/547 (10%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT----------- 51
           + G +  ++  DL   LP G +G  +  +  D     +        +P+           
Sbjct: 171 VMGCLESISNMDLTFSLPFGAKGYVKFNEISDEFTKYQESVMRSKDIPSNFVKLDTIMNR 230

Query: 52  ---IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
              +F +GQ++   ++ L D+ K  G   +  +LR  ++  G +  T +EGM +   VKS
Sbjct: 231 IKGMFMIGQIMKVAIVGLTDNAKSFG---LHCTLRTDVVNVGSTTSTFKEGMTIFGEVKS 287

Query: 109 IEDHGYILHFGLP-SFTGFLPRNNL-----AENSGID-------VKPGLLLQGVVRSIDR 155
           +ED GYI+ FG      GF+  +N       + +G         +  G  L+ V+  ID 
Sbjct: 288 VEDRGYIVSFGKDVEAKGFIEHSNTRYFWPVQGAGTQWNENECRLAQGQPLEAVITEIDS 347

Query: 156 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 215
                 L++    +++    D   +++D +  GMMV T++  I  NG+ ++FL YF G +
Sbjct: 348 ATNTFKLNASHPLINRSTVTDSAVVTMDSIKAGMMVDTKIAKIYRNGISVTFLDYFAGDI 407

Query: 216 DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-SHVKVG 274
              HL+         ++Y+    + ARIL+VD   + +GL+   ++L  R  P   +K G
Sbjct: 408 FFTHLEKPL------SEYSVSMNLKARILYVDQIDKKIGLSALSHVLGLRPYPFGQIKPG 461

Query: 275 DIYDQS--KVVRVDRGLGLLLDIPSTPVSTP--AYVTISDVAEEEVRKLEKKYK-----E 325
            I+  S  ++ RVD  L + + I S+  S P   Y+    + + +V  L+  Y      +
Sbjct: 462 AIFKSSEIQITRVD-PLEMYVSINSSQNSQPLKGYIHHKKIPDVKVDNLKSIYHPNGKFD 520

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFGAIVQ 383
             C   RI+   H++ + T  L  S     V+ + ++ PGM++    K+I  DS    V+
Sbjct: 521 KDC---RIIHVDHVDAMVTLTLSKSDLSKEVYNYYNLFPGMIINAVIKIIRPDSIE--VE 575

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLA 441
               +  + P  ++++  +  P KKFKVG  +  RVL    + KR+ +T K +L+ S L 
Sbjct: 576 VSPSIYGVVPKHNIADTILSDPSKKFKVGQAVRCRVLSCVPQYKRLMLTMKNSLINSTLP 635

Query: 442 ILSSYAEATDRLITHGWITKIEKHG-CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           I ++ A      I+HG+I+ I+ +   FV F++   G   +  L   P       + +GQ
Sbjct: 636 IFTNSANVNVGDISHGYISNIKDNSHIFVTFFDKCFGIVQKKHLSNLPVTMIEDHFKIGQ 695

Query: 501 VVKCRIM 507
           VV  +++
Sbjct: 696 VVAAQVI 702



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 134/625 (21%), Positives = 244/625 (39%), Gaps = 107/625 (17%)

Query: 884  GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPL 943
            G+ + +  ++      A +LL  L+A     +  + R   K+ Y  G +V   +  I  +
Sbjct: 126  GKKMPSDYLSKKQEQDAQKLLPFLRA---NFSKDANRLLFKNFY-TGLVVMGCLESISNM 181

Query: 944  ELRLKFGIGFHGRIHITEVNDDKSNVVENLF------SNFKIGQTVTARI---------- 987
            +L      G  G +   E++D+ +   E++       SNF    T+  RI          
Sbjct: 182  DLTFSLPFGAKGYVKFNEISDEFTKYQESVMRSKDIPSNFVKLDTIMNRIKGMFMIGQIM 241

Query: 988  -IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1046
             +A     D  KSF    +++  ++ V    S   F+E     G  + G V  V++   +
Sbjct: 242  KVAIVGLTDNAKSFGLHCTLRTDVVNVGSTTS--TFKE-----GMTIFGEVKSVEDRGYI 294

Query: 1047 LTISRHLKAQLFILDSA---YEP-----SELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1098
            ++  + ++A+ FI  S    + P     ++  E + R   G+ +   +  I+      +L
Sbjct: 295  VSFGKDVEAKGFIEHSNTRYFWPVQGAGTQWNENECRLAQGQPLEAVITEIDSATNTFKL 354

Query: 1099 -VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1157
                P    I+  TV  S       I  G +V  +I+KI     G+ V    +  G + F
Sbjct: 355  NASHPL---INRSTVTDSAVVTMDSIKAGMMVDTKIAKIYRN--GISVTFLDYFAGDIFF 409

Query: 1158 TEL------------------------KNICVSD-----PLSGYDEGQFDPLSGY--DEG 1186
            T L                        K I +S       L  Y  GQ  P + +   E 
Sbjct: 410  THLEKPLSEYSVSMNLKARILYVDQIDKKIGLSALSHVLGLRPYPFGQIKPGAIFKSSEI 469

Query: 1187 QFVKCKVLEI---------SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
            Q  +   LE+         S+ ++G  H +      +D + S    +   D D    H++
Sbjct: 470  QITRVDPLEMYVSINSSQNSQPLKGYIHHKKIPDVKVDNLKSIYHPNGKFDKDCRIIHVD 529

Query: 1238 KIE----------DLS----------PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1277
             ++          DLS          P MI+   +K +      + +S  +   V   N+
Sbjct: 530  HVDAMVTLTLSKSDLSKEVYNYYNLFPGMIINAVIKIIRPDSIEVEVSPSIYGVVPKHNI 589

Query: 1278 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1337
            +D  +  P K+F +G+ V  RVLS  P  KR+ +T+K S    ++     N +N++VGDI
Sbjct: 590  ADTILSDPSKKFKVGQAVRCRVLSCVPQYKRLMLTMKNS-LINSTLPIFTNSANVNVGDI 648

Query: 1338 VIGQIKRV-ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKE 1396
              G I  + ++  +F+T  +    G+     LS   V  IE  ++ G+ V  ++  + + 
Sbjct: 649  SHGYISNIKDNSHIFVTFFD-KCFGIVQKKHLSNLPVTMIEDHFKIGQVVAAQV--IGRN 705

Query: 1397 KRRISLGMKSSYFKNDADNLQMSSE 1421
            K  + L +  S  + + D  Q+  E
Sbjct: 706  KFSLDLSLVISNLEEEEDQPQVKDE 730



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 595
           G +++ V+ ++ P+++ V V    Y  G +P  ++AD +      K  +       ++L 
Sbjct: 557 GMIINAVIKIIRPDSIEVEVSPSIY--GVVPKHNIADTILSDPSKKFKVGQAVRC-RVLS 613

Query: 596 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG-CFVRFLGRLTGF 654
              +   L+L+ K SLINS   + +++++++   + HGY+ NI +    FV F  +  G 
Sbjct: 614 CVPQYKRLMLTMKNSLINSTLPIFTNSANVNVGDISHGYISNIKDNSHIFVTFFDKCFGI 673

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVN 686
             +    +     +   + +GQ V + ++  N
Sbjct: 674 VQKKHLSNLPVTMIEDHFKIGQVVAAQVIGRN 705


>gi|294939872|ref|XP_002782591.1| programmed cell death protein, putative [Perkinsus marinus ATCC
            50983]
 gi|239894389|gb|EER14386.1| programmed cell death protein, putative [Perkinsus marinus ATCC
            50983]
          Length = 235

 Score =  169 bits (428), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 134/221 (60%), Gaps = 8/221 (3%)

Query: 1580 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1639
            Q +  R+E ++LN+W+AY NLE       E+    +F+RA  Y D KKVH+A+  ++ R 
Sbjct: 1    QRLGFRDEQDRLNLWIAYLNLEAHVRGRVED----LFKRAASYNDSKKVHMAMCDVWARA 56

Query: 1640 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKF 1697
                LA E   +  +KF HS KVW++ ++ L    +  E  Q  + RAL    R KH   
Sbjct: 57   GAEDLALEAYKRTAEKFGHSKKVWMKYLEFLYSTGKLSEARQNCLPRALRLTDRRKHSLI 116

Query: 1698 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG--DVDLIRGLFERA 1755
             ++ A LE+K G  +RG+++FE +L+  PKR D+WS+YLD+ I     D D +R +F+RA
Sbjct: 117  ATRAAKLEYKYGTVERGKTIFESLLASQPKRLDIWSVYLDEHINANKEDADQVRSVFDRA 176

Query: 1756 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
            ++L L P KMKF FK+++ +E+S G+ + ++ VK KA EYV
Sbjct: 177  VTLKLKPAKMKFFFKRWVNFEQSYGDVDHLDLVKDKAREYV 217


>gi|401885552|gb|EJT49659.1| rRNA processing-related protein [Trichosporon asahii var. asahii
           CBS 2479]
          Length = 1478

 Score =  168 bits (426), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 165/633 (26%), Positives = 287/633 (45%), Gaps = 58/633 (9%)

Query: 94  ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG------FLPRNNLAENSGIDVKPGLLLQ 147
           + V++G  +   V   ED GY +  GL + TG      F+P   + +N+G  + PG L+ 
Sbjct: 241 QDVEKGYRIVGEVLGAEDKGYRVGLGLSADTGLAGVEGFIPIEEVEKNAGGALIPGQLIP 300

Query: 148 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 207
            VV  +    +VV L+ DP T+      ++  I    L+PG + S  V +++ +G+ +  
Sbjct: 301 TVVSEVKAGGRVVKLTLDPQTLIHSSLTEVSNIGS--LLPGQLASCLVTAVVPSGLNVKI 358

Query: 208 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYLLHNR 265
             ++ GT+DI HL       + ++ YN  KK+ ARIL+  V  + R   L+  P++ +  
Sbjct: 359 CGFYDGTIDIAHL--GLGEDDIEDRYNIGKKIKARILYDTVASSERRFALSALPHIFNLA 416

Query: 266 APPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 316
           +P +          + VG      KV+RV    G    +P+   ST              
Sbjct: 417 SPVAADGETPLEIAIPVGKTLPSVKVIRVIPDWG---RVPTLSNST-------------- 459

Query: 317 RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 376
                ++K G+  R R++G   L+G+     +      +     ++  G V+KG V  + 
Sbjct: 460 ----GQFKVGTYHRARVIGHSPLDGVMLLSFEEKVLNQVFMQVGELTIGQVLKGTVRKLS 515

Query: 377 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 434
             G  V   G V  +    H ++  +  P K+FKVGA +  RV  ++    R+ +T KK+
Sbjct: 516 DKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVGASVKARVFAIEPARNRVVLTLKKS 575

Query: 435 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 494
           LV+S L +  S+A+ T   IT   ++KI   GC V  + G++ F P+SE   +     + 
Sbjct: 576 LVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLND 635

Query: 495 MYHVGQVVKCRIMSSIPASRRINLSFMMK-PTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 553
           ++ VG+ V  RI      S+++  S     PT V+ + L ++GS VSG+V  +    VVV
Sbjct: 636 VFFVGKAVNVRITDVDEHSQKLVASVRQALPTAVAAEKL-EVGSDVSGIVAQIHAEQVVV 694

Query: 554 YVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NESSNLLL----SA 607
            +I    +   +   +L++H       ++  +K G + + L+V+  N +S L++     A
Sbjct: 695 TLIPSQLT-ALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVANKRA 753

Query: 608 KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 667
           K  +         +   I    V+ G V +    G  VR   ++ G    + A D    D
Sbjct: 754 KKGIPTGISTPARNFDAIAVGDVLPGRVISKTPQGAMVRLGKKIRGRVAPTDASD----D 809

Query: 668 LSKT-YYVGQSVRSNILDVNSETGRITLSLKQS 699
           LS     V   V   +L V++E+  I LS ++S
Sbjct: 810 LSAPGLKVDDDVLCCVLKVDAESRAIDLSTRKS 842



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 149/561 (26%), Positives = 247/561 (44%), Gaps = 92/561 (16%)

Query: 875  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-AISETETSSSKRAKKKSSYDVGSLV 933
            K P+K+F  G SV A V A+  +    R++L LK ++ E++               GS  
Sbjct: 542  KHPEKRFKVGASVKARVFAIEPARN--RVVLTLKKSLVESDLPVP-----------GSFA 588

Query: 934  QAEITEIKPLELRLKFGIG-----FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
                 EI P  +      G     F G       ++  +N V NL   F +G+ V  RI 
Sbjct: 589  DVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRIT 648

Query: 989  AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1048
                  D+ +     ++     L  +    KL        +G  V+G V ++  E  ++T
Sbjct: 649  ------DVDEHSQKLVASVRQALPTAVAAEKL-------EVGSDVSGIVAQIHAEQVVVT 695

Query: 1049 -ISRHLKAQLFILD-SAYEPSELQEFQRRFHIGK-----------AVTGHVLSINKEKKL 1095
             I   L A L + + S +    + E ++   +G+           A +G ++  NK  K 
Sbjct: 696  LIPSQLTALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVANKRAK- 754

Query: 1096 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR-ISKILSGVGGLVVQIGPHLYGR 1154
                 +    GIS    +         I  GD++ GR ISK   G    +V++G  + GR
Sbjct: 755  -----KGIPTGISTPARNFDA------IAVGDVLPGRVISKTPQGA---MVRLGKKIRGR 800

Query: 1155 VHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1214
            V  T+      SD LS           G      V C VL++    R    ++LS R S 
Sbjct: 801  VAPTD-----ASDDLSA---------PGLKVDDDVLCCVLKVDAESRA---IDLSTRKS- 842

Query: 1215 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1274
                          VD     +    DL     V+G VKNV   G F+ L R + A+V++
Sbjct: 843  ----RVQPYSAPAIVDA---EINSTADLKAGQSVRGIVKNVAPNGLFVALGRSVTARVMI 895

Query: 1275 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1334
              L D +V+  +  F +G +V+G++LSV     RVE+TL+T   +  +++++  L++   
Sbjct: 896  KELFDDFVKDWKARFAVGDVVSGKILSVG--DDRVEMTLRTKPRKAGAETKL-TLADFKE 952

Query: 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKIL 1391
            G  V   +KRVES+GLF+ I+ +++ GLCH SE+S++   ++      +R  + V+  I 
Sbjct: 953  GQKVEATVKRVESFGLFLRIDGSDVSGLCHRSEISDNKKQDVSQALKGFREKDHVRAVIT 1012

Query: 1392 KVDKEKRRISLGMKSSYFKND 1412
             +DKEK +I+  +K+S+F +D
Sbjct: 1013 SIDKEKGKINFSIKASHFSDD 1033



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 87/166 (52%), Gaps = 8/166 (4%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            ++ +L+   +++G V+ ++ KG F+ +   +D  V   + +D  ++ PEK F +G  V  
Sbjct: 497  QVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVGASVKA 556

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEI---NNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            RV ++EP   RV +TLK    ++  +S++    + +++  G+I    + ++   G  + +
Sbjct: 557  RVFAIEPARNRVVLTLK----KSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDL 612

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
                L      SE S ++V N+  ++  G+ V V+I  VD+  +++
Sbjct: 613  FG-GLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVDEHSQKL 657



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 104/227 (45%), Gaps = 19/227 (8%)

Query: 493 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-----TRVSEDDLVKLGSLVSGVVDVVT 547
           +  + VG   + R++   P    + LSF  K       +V E   + +G ++ G V  ++
Sbjct: 459 TGQFKVGTYHRARVIGHSPLDGVMLLSFEEKVLNQVFMQVGE---LTIGQVLKGTVRKLS 515

Query: 548 PNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNL 603
              + V V  +G   G +   H AD    H E    + + +K      ++  ++   + +
Sbjct: 516 DKGLFVNV--QGNVDGVVWPLHYADIRLKHPEKRFKVGASVKA-----RVFAIEPARNRV 568

Query: 604 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 663
           +L+ K SL+ S   +P   + +    +    V  I++ GC V   G L  F P+S+A   
Sbjct: 569 VLTLKKSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTN 628

Query: 664 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
             A+L+  ++VG++V   I DV+  + ++  S++Q+  ++  A  ++
Sbjct: 629 YVANLNDVFFVGKAVNVRITDVDEHSQKLVASVRQALPTAVAAEKLE 675


>gi|68076587|ref|XP_680213.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56501107|emb|CAH98739.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 432

 Score =  168 bits (425), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 96/286 (33%), Positives = 162/286 (56%), Gaps = 29/286 (10%)

Query: 1538 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1597
            P ++E+L+ S  N S +WI Y+ + L   ++++AR+IAERAL+TI+I    EKLNI++ Y
Sbjct: 146  PYDYEKLLVSEKNKSTIWISYIVYYLEKGNIQEARNIAERALKTIDIHLIEEKLNIYLCY 205

Query: 1598 FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1657
             N+E  YG+   E    +F+RAL   + K ++L  + + +  ++     EL  + IKKFK
Sbjct: 206  INMECAYGDNLNE----IFKRALLVNNEKSIYLHTMNILKMNKKLNELKELCEEGIKKFK 261

Query: 1658 HSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1715
            +S K+W R ++ L      +E    ++ ++L +LP+ KH+  I   A  E+K    +RG+
Sbjct: 262  YSKKIWTRYLELLHNTLNDEEYAHNILLKSLHALPKRKHLNIIINAARFEYKYSNIERGK 321

Query: 1716 SMFEGILSEYPKRTDLWSIYLD-----------------------QEIRLGDVDLIRGLF 1752
            + FE ++ EYPKR+D+W  YLD                       +++ L ++  IR +F
Sbjct: 322  NYFEKLIQEYPKRSDIWFTYLDIHINSLTKAKKNENDDENQKKKIKKLTLNELQFIRNIF 381

Query: 1753 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            ER +S+    + MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 382  ERFLSIKFKTRVMKMIFTKWLLFEKNHGSVNTQKMVQKKAYDYVES 427


>gi|385305108|gb|EIF49102.1| part of small ribosomal subunit processosome (contains u3 snorna)
           [Dekkera bruxellensis AWRI1499]
          Length = 1300

 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 178/692 (25%), Positives = 308/692 (44%), Gaps = 65/692 (9%)

Query: 49  LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
           L T F VGQ +   V++   +  + GK++  LS     + KGL  +  +    + A ++S
Sbjct: 198 LSTRFSVGQYLRAYVVE---NTSDTGKKRFELSXEPENVNKGLKKDDFEPNTYVQASIRS 254

Query: 109 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP----GLLLQGVVRSIDRTRKVVYLSS 164
           +EDHG IL  G+    GFL + + A   GID+       + L  V +   RT ++   S+
Sbjct: 255 VEDHGAILDLGMHDMNGFLSKKD-ATKGGIDLASLEVGSVHLLTVKKRSGRTLQLTIPSN 313

Query: 165 D------PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 218
           +      P +VS          +ID ++PG +V   +  ++  G+++       G++ + 
Sbjct: 314 NVEKEQIPSSVS----------TIDAILPGSLVDCTITDVVSZGLIVKAFGLANGSISLT 363

Query: 219 HLQNTFPTTNWKNDYNQHKKVNARIL--FVDPTSRAVGLTLNPYLLH----------NRA 266
           H+   + ++  ++ +   + V AR+   ++    R V L+L P++++            A
Sbjct: 364 HI-GKYNSSELEDTFKVGESVRARVYASYIQDGLRNVQLSLLPHIVNLKKLAYDPKDESA 422

Query: 267 PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS-TPVSTPAYVTISDVAEEEVRKLEKKYKE 325
           P     +G I+D+  +   D    L  D+ S T V       +S  A+     L+  +K 
Sbjct: 423 PLVAFPIGHIFDEVTIQGCDSNY-LFADLGSRTAVGQIHKSRVSKGAD-----LDTDFKT 476

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA-VDSFGAIVQF 384
           GS  R R+LG+   + +    +     +       D+  G  VK KV   V   G  V  
Sbjct: 477 GSTHRARVLGYSLFDNVYILTMDEEKIDQKYLRMEDIPAGQYVKCKVDKIVPGKGIQVNL 536

Query: 385 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKR--ITVTHKKTLVKSKL 440
               +   P  H+S+  ++ P +KFK+G  +  RVL V   S R  I +T K+TLV +  
Sbjct: 537 EDTFEGFVPDVHISDVHLLYPQRKFKIGRXVKGRVLRVSXNSTRPTIYITLKRTLVSADD 596

Query: 441 A-ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 499
           + I SS+ EAT        + +    GC V F+  ++GF P SE+      +P     +G
Sbjct: 597 SEIXSSFDEATVGKXALATVERFYPGGCLVSFFGFLRGFLPNSEISETFVSKPXDFLKLG 656

Query: 500 QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV------VV 553
           Q V+ RI++      R+ +S  +  T +SE     +  +V G   +V  N V      ++
Sbjct: 657 QTVRVRIINVEKEKNRMKVSMRVAET-LSEKQTEAMEXIVPGKT-IVECNIVEKNRNSLI 714

Query: 554 YVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYS 610
             +A    +G IP   L+D  + E  +++K     G     L++    +   + L+ K S
Sbjct: 715 AELADSNLRGVIPCGQLSDKTYDECRSLLKKT-XVGSXVKALVISKVPNGRFVDLTLKPS 773

Query: 611 LINSAQQ--LPSDASHIHPNSV-VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 667
           L+  A    LPSD S I  +S  +HG+V N+   G FV F  +LTG              
Sbjct: 774 LMKDAANGVLPSDYSDITMSSKELHGFVKNVTRYGVFVSFANQLTGLILPRYLNSNDVEY 833

Query: 668 LSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           L K ++V QS+   ++ ++    R  LS+K+S
Sbjct: 834 LEKKFFVNQSISCRVVKMDDANXRFLLSMKES 865



 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 169/755 (22%), Positives = 318/755 (42%), Gaps = 120/755 (15%)

Query: 642  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701
            GC V F G L GF P S+  +   +       +GQ+VR  I++V  E  R+ +S++    
Sbjct: 623  GCLVSFFGFLRGFLPNSEISETFVSKPXDFLKLGQTVRVRIINVEKEKNRMKVSMR---- 678

Query: 702  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 761
                             +A   S K   +    V G    +++E  + E N   ++    
Sbjct: 679  -----------------VAETLSEKQTEAMEXIVPG---KTIVECNIVEKNRNSLIAELA 718

Query: 762  EHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDR 811
            + S++ G I   QL+  T +           GS ++A ++      R VDL+LK   +  
Sbjct: 719  D-SNLRGVIPCGQLSDKTYDECRSLLKKTXVGSXVKALVISKVPNGRFVDLTLKPSLM-- 775

Query: 812  FREANSNRQAQKKKRKREASKDLG--VHQTVNAIVEIVKENYLV-LSLPEYNHSIGYASV 868
             ++A +            +SK+L   V       V +   N L  L LP Y +S      
Sbjct: 776  -KDAANGVLPSDYSDITMSSKELHGFVKNVTRYGVFVSFANQLTGLILPRYLNS------ 828

Query: 869  SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-----AISETETSSSKRAKK 923
               N  ++ +K+F   QS+   V+ +  ++   R LL +K      I        K  KK
Sbjct: 829  ---NDVEYLEKKFFVNQSISCRVVKMDDANX--RFLLSMKESKGGVIEPXNNPVDKHIKK 883

Query: 924  KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQ 981
             + Y  G + +A +  +K   L ++      GRI +T + D   ++ +  N  S FK G+
Sbjct: 884  LNEYIPGRITRAVVKSVKLAYLIVRLADNQLGRIDVTNLFDKFEDIKDPKNPTSQFKEGE 943

Query: 982  TVTARIIAKSNKPDMKKSFLWE-----------LSIKPSMLTVSEIGSKLLFEEC-DVSI 1029
             +  ++I   +  +   ++L E           LS +   +   +   +L      D  I
Sbjct: 944  ILKVKVIGYFDSRN--HTYLTENHRRFDESVIGLSARKVDIDTGKNTERLNLPTIEDAKI 1001

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            G  + G+V         ++++   K ++  ++ + + S L + ++   IG A+   ++ +
Sbjct: 1002 GDEILGFVNNFSIGAVWISMAXKYKGRVSFMNLSSDISVLSDVEKVHPIGSALKLKIVDV 1061

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
             K+   + L       G +D    I +      +H GD V  R+ K+      +++++G 
Sbjct: 1062 XKQYSTVEL------SGRADYITSIDS------VHVGDRVPARVVKVYESY--VLLELGD 1107

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
            H+    + TE         L  YD+ + + +  Y +      +VLE+ +  +    +E+S
Sbjct: 1108 HVDAAAYITE--------ALDDYDQ-KLEEV--YAQNDVXAARVLEVDKPSK---RIEVS 1153

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
            L+S           D + D     K ++  +DL    IV+G+V  + + G  + LS+ + 
Sbjct: 1154 LQS-----------DTAKD-----KSIDSADDLKVGDIVRGFVNRINNGGLLVXLSKDVY 1197

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1329
            A V ++NLSD Y++  +  F + + V G+V+  + L K + ++LK SD  +     +   
Sbjct: 1198 AFVKVANLSDSYLKDWKPFFKLYQPVTGKVVRADGLGK-IMLSLKESDI-SGKAHLLKRF 1255

Query: 1330 SNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLC 1363
             +L VG+I  G +K V  YG+F+ ++   NL G  
Sbjct: 1256 EDLKVGEIYDGVVKSVVEYGVFVKLDGCLNLTGFV 1290



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 103/482 (21%), Positives = 220/482 (45%), Gaps = 47/482 (9%)

Query: 953  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1012
              G I   +++D   +   +L     +G  V A +I+K     +      +L++KPS++ 
Sbjct: 722  LRGVIPCGQLSDKTYDECRSLLKKTXVGSXVKALVISK-----VPNGRFVDLTLKPSLMK 776

Query: 1013 VSEIGSKLLFEECDVSIGQR-VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1071
             +  G  L  +  D+++  + + G+V  V      ++ +  L     IL      ++++ 
Sbjct: 777  DAANGV-LPSDYSDITMSSKELHGFVKNVTRYGVFVSFANQLTG--LILPRYLNSNDVEY 833

Query: 1072 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE-GDIVG 1130
             +++F + ++++  V+ ++       L ++  + G+    ++  N+ +   I +  + + 
Sbjct: 834  LEKKFFVNQSISCRVVKMDDANXRFLLSMKESKGGV----IEPXNNPVDKHIKKLNEYIP 889

Query: 1131 GRISKILSG---VGGLVVQIGPHLYGRVHFTEL--KNICVSDPLSGYDEGQFDPLSGYDE 1185
            GRI++ +     +  L+V++  +  GR+  T L  K   + DP         +P S + E
Sbjct: 890  GRITRAVVKSVKLAYLIVRLADNQLGRIDVTNLFDKFEDIKDPK--------NPTSQFKE 941

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLR--SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
            G+ +K KV+    +   T+  E   R   S+ G+S+    D+ T  +T   +L  IED  
Sbjct: 942  GEILKVKVIGYFDSRNHTYLTENHRRFDESVIGLSA-RKVDIDTGKNTERLNLPTIEDAK 1000

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLS 1301
                + G+V N +    +I ++ K   +V   NLS     +   EK  PIG  +  +++ 
Sbjct: 1001 IGDEILGFVNNFSIGAVWISMAXKYKGRVSFMNLSSDISVLSDVEKVHPIGSALKLKIVD 1060

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESYGLFITIENTNLV 1360
            V      VE++             I ++ ++HVGD V  ++ +V ESY L    ++ +  
Sbjct: 1061 VXKQYSTVELS--------GRADYITSIDSVHVGDRVPARVVKVYESYVLLELGDHVD-- 1110

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK----NDADNL 1416
               +++E  +D+   +E +Y   +    ++L+VDK  +RI + ++S   K    + AD+L
Sbjct: 1111 AAAYITEALDDYDQKLEEVYAQNDVXAARVLEVDKPSKRIEVSLQSDTAKDKSIDSADDL 1170

Query: 1417 QM 1418
            ++
Sbjct: 1171 KV 1172



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 1238 KIEDLSPNMIVQGYV-KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            ++ED+     V+  V K V  KG  + L    +  V   ++SD ++  P+++F IG+ V 
Sbjct: 509  RMEDIPAGQYVKCKVDKIVPGKGIQVNLEDTFEGFVPDVHISDVHLLYPQRKFKIGRXVK 568

Query: 1297 GRVLSVEPLSKR--VEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFIT 1353
            GRVL V   S R  + +TLK +   +A  SEI ++     VG   +  ++R    G  ++
Sbjct: 569  GRVLRVSXNSTRPTIYITLKRT-LVSADDSEIXSSFDEATVGKXALATVERFYPGGCLVS 627

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
                 L G    SE+SE  V       + G+ V+V+I+ V+KEK R+ + M+
Sbjct: 628  FFGF-LRGFLPNSEISETFVSKPXDFLKLGQTVRVRIINVEKEKNRMKVSMR 678



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 110/489 (22%), Positives = 216/489 (44%), Gaps = 81/489 (16%)

Query: 930  GSLVQAEITEIKP---LELRLKFGI-GFHGRIHITEVNDDKSNVVENLFSN--FKIGQTV 983
            G  V+ ++ +I P   +++ L+    GF   +HI++V+         L+    FKIG+ V
Sbjct: 516  GQYVKCKVDKIVPGKGIQVNLEDTFEGFVPDVHISDVH--------LLYPQRKFKIGRXV 567

Query: 984  TARII---AKSNKPDMKKSFLWELSIKPSMLTV--SEIGSKLLFEECDVSIGQRVTGYVY 1038
              R++     S +P +       +++K ++++   SEI S   F+E   ++G+     V 
Sbjct: 568  KGRVLRVSXNSTRPTIY------ITLKRTLVSADDSEIXSS--FDEA--TVGKXALATVE 617

Query: 1039 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1098
            +      L++    L+   F+ +S    + + +      +G+ V   ++++ KEK  +++
Sbjct: 618  RFYPGGCLVSFFGFLRG--FLPNSEISETFVSKPXDFLKLGQTVRVRIINVEKEKNRMKV 675

Query: 1099 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG-PHLYGRVHF 1157
             +R     +++   +   + M+  +    IV   I  +      L+ ++   +L G +  
Sbjct: 676  SMR-----VAETLSEKQTEAMEXIVPGKTIVECNI--VEKNRNSLIAELADSNLRGVIPC 728

Query: 1158 TELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL--D 1215
             +L +         YDE +   L     G  VK   L IS+   G F V+L+L+ SL  D
Sbjct: 729  GQLSD-------KTYDECR-SLLKKTXVGSXVKA--LVISKVPNGRF-VDLTLKPSLMKD 777

Query: 1216 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1275
              +    SD S D+    K L             G+VKNVT  G F+  + +L   +L  
Sbjct: 778  AANGVLPSDYS-DITMSSKEL------------HGFVKNVTRYGVFVSFANQLTGLILPR 824

Query: 1276 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV- 1334
             L+   VE  EK+F + + ++ RV+ ++  + R  +++K  +S+       NN  + H+ 
Sbjct: 825  YLNSNDVEYLEKKFFVNQSISCRVVKMDDANXRFLLSMK--ESKGGVIEPXNNPVDKHIK 882

Query: 1335 -------GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----NIETIYRA 1382
                   G I    +K V+   L + + + N +G   V+ L +   D     N  + ++ 
Sbjct: 883  KLNEYIPGRITRAVVKSVKLAYLIVRLAD-NQLGRIDVTNLFDKFEDIKDPKNPTSQFKE 941

Query: 1383 GEKVKVKIL 1391
            GE +KVK++
Sbjct: 942  GEILKVKVI 950


>gi|221060604|ref|XP_002260947.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
            knowlesi strain H]
 gi|193811021|emb|CAQ42919.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
            knowlesi strain H]
          Length = 459

 Score =  167 bits (424), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 155/280 (55%), Gaps = 22/280 (7%)

Query: 1537 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1596
             P ++ERL+ S  N+S +W+ Y+A+ L    +E+AR  AERAL+TI+I +  EK NI+  
Sbjct: 179  NPSDYERLLASEKNNSAIWVSYIAYHLQKGSLEEARKTAERALKTIDIHKVEEKKNIFFC 238

Query: 1597 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1656
            Y N+E  YG+   E    VF+RAL  C+ KKV++  + + +  ++     +L  + IKKF
Sbjct: 239  YINMECTYGDKLRE----VFKRALLCCNEKKVYMHTMNVLKVNKKYNQLKQLSEEAIKKF 294

Query: 1657 KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1714
             +S K+W   ++ +     +   A  ++ ++L  LP+ KH++ +   A  E+K    +RG
Sbjct: 295  HYSKKIWSHYLEIIHSTFNDEAYAHEILLKSLHCLPKRKHLRMVINAARFEYKYANKERG 354

Query: 1715 RSMFEGILSEYPKRTDLWSIYLDQEI----------------RLGDVDLIRGLFERAISL 1758
            +S FE ++ EYPKR+D+W  YLD  I                 L  +  +R +FER  S 
Sbjct: 355  KSYFEKLIQEYPKRSDVWFTYLDIHINSLTKGETKGEKKKKLNLNQLQFVRNIFERFSSC 414

Query: 1759 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
                + MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 415  KFKTRVMKMIFTKWLLFEKNHGNVTSQKMVQKKAYDYVES 454


>gi|399216606|emb|CCF73293.1| unnamed protein product [Babesia microti strain RI]
          Length = 953

 Score =  167 bits (423), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 177/326 (54%), Gaps = 32/326 (9%)

Query: 1498 EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE---KDAPRTPDEFERLVRSSPNSSFV 1554
            + KT+  K  R   KK+   RE+EIR  E + +    K+ P +P +FERL+  +   +  
Sbjct: 633  DTKTVISKTKR---KKKPRAREKEIRKIENKYVNGSWKENPESPWDFERLLVENNKLAET 689

Query: 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614
            WI+YMA+ L+ ++++ AR +AER ++ I I +   ++N+W+AY N+E +YG+  ++    
Sbjct: 690  WIRYMAYHLNNSNLKLAREVAERGIKAITINDLQGRMNLWIAYLNMEVKYGDNAKD---- 745

Query: 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1673
            VF+R++   DP  +++ +  +Y +  + +LA E   + I KF    ++W+  ++   K+ 
Sbjct: 746  VFKRSINCNDPATMYIKMFRIYSKCGKAELAMETANEGISKFPDLNELWIDLLKFYYKEG 805

Query: 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR-------GRSMFEGILSEYP 1726
            + +  + + ++A     + +     SQ A+LE+K G  +R       G+ MFE +L E  
Sbjct: 806  KADCAKELHKKASQRCSKREFCYITSQIALLEYKYGDPNRYRRDNISGQDMFEKLLDENA 865

Query: 1727 KRTDLWSIYLDQEI--------------RLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1772
            KR D W  Y+D  I              R   ++ +R +F+RA  L L PKKMK +F K+
Sbjct: 866  KRMDFWQQYIDAHIKYKLKNFDNMEKSKRTESMEQLRNIFKRATYLGLKPKKMKIIFAKW 925

Query: 1773 LEYEKSVGEEERIEYVKQKAMEYVES 1798
            L +E   G+ +    V+++A +YVES
Sbjct: 926  LSFETDYGDAKSQATVRERARQYVES 951


>gi|302823614|ref|XP_002993458.1| hypothetical protein SELMODRAFT_431529 [Selaginella moellendorffii]
 gi|300138732|gb|EFJ05489.1| hypothetical protein SELMODRAFT_431529 [Selaginella moellendorffii]
          Length = 743

 Score =  166 bits (419), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 182/353 (51%), Gaps = 85/353 (24%)

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
            L+S+L+      +     D+  PG+    +E       + G+VKNVT KGCF++L+  L+
Sbjct: 468  LKSALNQFIYRGTVRKVLDLKRPGRGKMGLE-------LSGFVKNVTEKGCFVVLAPSLE 520

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1329
            A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS  +E++L  + S+ +S       
Sbjct: 521  ARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSGHIEMSLAATTSQDSS-----GW 575

Query: 1330 SNLHVGDIVIGQIKRVESYGLFITIENTNLV------GLCHVSELSEDHVDNIETIYRAG 1383
                 G+IV G+I  +E++G+FI++  +N+        LCH SE+S D + ++ T+Y+ G
Sbjct: 576  KKFGAGEIVSGRIHNIEAFGIFISLAESNVFLVCAPGCLCHFSEVSYDFIQDLSTLYKVG 635

Query: 1384 EKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENS 1443
            + V+VKILKVD E +RISLGMK+SY   + D +    E   +EAI E  S N + L++N 
Sbjct: 636  QWVQVKILKVDAETKRISLGMKASYLTPE-DGI----EPMEEEAINEEPS-NTNVLMDND 689

Query: 1444 SVAVQD-MDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTI 1502
                +D +D+ S+    L +                                        
Sbjct: 690  EREEEDYLDLASKRFPQLCM---------------------------------------- 709

Query: 1503 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFV 1554
                   A  KEK             LL+KD  P T D+FERLV +SPNSS++
Sbjct: 710  ------EAAAKEK-------------LLQKDQPPETKDDFERLVAASPNSSYM 743


>gi|156102424|ref|XP_001616905.1| hypothetical protein [Plasmodium vivax Sal-1]
 gi|148805779|gb|EDL47178.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 458

 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 157/279 (56%), Gaps = 21/279 (7%)

Query: 1537 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1596
            +P ++ERL+ S  N+S +W+ Y+A+ L    +E+AR  AERAL+TI+I +  EK NI+  
Sbjct: 179  SPSDYERLLASEKNNSAIWVSYIAYHLEKGSLEEARKTAERALKTIDIHKVEEKRNIFFC 238

Query: 1597 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1656
            Y N+E  YG+   E    +F+RAL  C+ KKV++  + + +  ++     +L  + IKKF
Sbjct: 239  YINMECTYGDKLRE----IFKRALLCCNEKKVYIHTMNVLKVNKKYNQLKQLSEEAIKKF 294

Query: 1657 KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1714
             +S K+W   ++ +    ++   A  ++ ++L  L + KH++ +   A  E+K    +RG
Sbjct: 295  HYSKKIWSHYLEIIHSTFKDEAYAHEILLKSLHCLAKRKHLRMVINAARFEYKYANKERG 354

Query: 1715 RSMFEGILSEYPKRTDLWSIYLDQEI---------------RLGDVDLIRGLFERAISLS 1759
            +S FE ++ EYPKR+D+W  YLD  I                L  ++ +R +FER  S  
Sbjct: 355  KSYFEKLIQEYPKRSDVWFTYLDIHINSLTKSEIKGKKKKLNLNQLEFVRNIFERFSSCK 414

Query: 1760 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
               + MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 415  FKTRVMKMIFTKWLLFEKNHGSVASQKMVQKKAYDYVES 453


>gi|440295400|gb|ELP88313.1| programmed cell death protein, putative [Entamoeba invadens IP1]
          Length = 1782

 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 231/495 (46%), Gaps = 46/495 (9%)

Query: 1332 LHVGDIVIGQIKR-----VESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAG 1383
            +   D V G+  R     +   GLF    N+NL   CH S++          +   ++ G
Sbjct: 1305 VRASDAVCGKFARAVITAIYKSGLFFRFHNSNLRAFCHCSQIETGTFFTFSVLNSRFKVG 1364

Query: 1384 EKVKVKILKVDKE--KRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLE 1441
            +   VKI++ +    K  I + +K+     D  ++ +  E E D     +  +++     
Sbjct: 1365 DSHIVKIIQNNTRNGKPMIRVSIKAE----DIADVDIPDESEVDY----IDMWHKEDCKR 1416

Query: 1442 NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKT 1501
                 +Q +  E +D    V  + +    V P+EV+ D+E       I  NQ      + 
Sbjct: 1417 FIVQKIQTIKKELKDKIG-VNDEFKEPKEVIPVEVDWDEEGDVPLLNIVPNQKRHRMIRE 1475

Query: 1502 IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTP-----------------DEFERL 1544
              E + +        E E E+    E+   K+ PR                   ++   +
Sbjct: 1476 SSESSEQDV------ESEDEMEVEREKEQPKEEPREEQKEDEENEDKAVTQEMVEDLYEI 1529

Query: 1545 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1604
             +   N+S  WI+ +  +  ++ V KA    + AL+ I + +  ++ NIW AY  +E +Y
Sbjct: 1530 AQKDQNNSEKWIELIRAVRKIS-VVKALFYCQTALRNIALDKTQDRENIWKAYLQIEAKY 1588

Query: 1605 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1664
                E       Q AL+ CD KK+   +  +++  +   + + +   +++K K S +V+ 
Sbjct: 1589 RTNSEFQTA--LQDALRVCDVKKILFYMRSVFKSLQNISMEENMYTILLQKVKGSGRVYR 1646

Query: 1665 RRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1723
            +     ++  ++E    ++ +A   L + K++K   + A L++K G  D+GRSMFE IL 
Sbjct: 1647 KMCSFYMRTSREENAMVLLSKARKMLTKPKYMKLRIKMAQLQYKYGSVDKGRSMFESILE 1706

Query: 1724 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1783
            E+PKR DLW++YLD E R+G+  +IR LFER +++ L  K MK    KYL++E + G+  
Sbjct: 1707 EFPKRYDLWNVYLDMESRVGETPIIRRLFERIVAMKLSTKSMKTFLTKYLKFETNNGDNA 1766

Query: 1784 RIEYVKQKAMEYVES 1798
            R+E+V+Q A +YVES
Sbjct: 1767 RMEHVRQIAQKYVES 1781



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 186/450 (41%), Gaps = 43/450 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G  V+GKV  +     ++     V  +C   H++E         F  G  +  RVL +K+
Sbjct: 442 GAFVEGKVKTITKSYLVISVSKYVTGICFRKHVAEIPPDDLSDVFVKGQSVKARVLSIKN 501

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-KHGCFVRFYNGVQGFAPRSE 483
                T KK+ +  +L+I++S  +A D  IT+  +  ++ K G  + F+  V+G+ P  E
Sbjct: 502 NAFEFTMKKSYMVPELSIIASTEDALDNQITYAMVDHVDPKTGVNISFFGDVKGYVPIVE 561

Query: 484 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL------GS 537
           L  D   E  S++ +      R+  S     +I  S  + P     D +V L      G 
Sbjct: 562 L-FDHRVEAISLFSI-----LRVRVSSVEKGKITASLNLYPKEGKVDKIVDLISKFQVGE 615

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 597
           + SG V     N ++V +     S  +I   H  +  +  + ++  IK G  F+Q LVL 
Sbjct: 616 IYSGTVIGKRMNKMLVRLRKDDASYVSILPNHYVEDGDDGSGIQEKIKNGSVFEQCLVLS 675

Query: 598 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
           N +  + ++ K SLI    ++    S+    ++  G     +  GC V F+G+       
Sbjct: 676 NIAGKITITTKKSLIALKSKIAKCDSY---QTLEEG-----VYVGC-VNFVGQF------ 720

Query: 658 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR---ITLSLKQSCCSSTDASFMQEHFL 714
            KAV          +Y    +  + +D+ ++  +     L L Q+       +   +HF 
Sbjct: 721 -KAV--------VVFYNHVQISVHAIDITNDQDKPMNTLLKLGQTVVGKVRRAKEVKHFN 771

Query: 715 LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS-FEEHSDVYGFITHH 773
           + E        +         + F+ GS I   V E+ D+G++ S + +++    F    
Sbjct: 772 MRENAGYCMPEEAFLLPAFPQKPFVFGSEIVITVDETQDYGIIGSAYLDNTKYTTFTPKA 831

Query: 774 QLAG--ATVESGSVIQAAILDVAKAERLVD 801
            + G  AT   G+  +A ++   +   +VD
Sbjct: 832 GIKGEIATFAIGNTFKAVVIGFDQKTNIVD 861


>gi|70928557|ref|XP_736472.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56511034|emb|CAH85244.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 274

 Score =  163 bits (412), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 93/274 (33%), Positives = 152/274 (55%), Gaps = 29/274 (10%)

Query: 1550 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1609
            N S +WI Y+A+ L   ++++AR+IAERAL+TI+I    EKLNI++ Y N+E  YG+   
Sbjct: 3    NKSTIWISYIAYYLEKGNIQEARNIAERALKTIDIHLIEEKLNIYLCYINMECAYGDNLN 62

Query: 1610 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1669
            +    +F+RAL   + K ++L  + + +  ++     EL  + IKKFK+S K+W R ++ 
Sbjct: 63   D----IFKRALLVNNEKSIYLHTMNILKMNKKYNELKELCEEAIKKFKYSKKIWTRYLEL 118

Query: 1670 LLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1727
            L      +E    ++ ++L +LP+ KH+  I   A  E+K    +RG++ FE ++ EYPK
Sbjct: 119  LHNTLNDEEYAHNILLKSLHALPKRKHLNIIINAARFEYKYSNIERGKNYFEKLIQEYPK 178

Query: 1728 RTDLWSIYLDQEIR-----------------------LGDVDLIRGLFERAISLSLPPKK 1764
            R+D+W  YLD  I                        L ++  IR +FER  S+    + 
Sbjct: 179  RSDIWFTYLDIHINSLTKGKKNENDDENKKKKIKKLTLNELQFIRNIFERFSSIKFKTRV 238

Query: 1765 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
            MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 239  MKMIFTKWLLFEKNHGSVNTQKMVQKKAYDYVES 272


>gi|242223612|ref|XP_002477408.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723046|gb|EED77394.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1088

 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 159/592 (26%), Positives = 267/592 (45%), Gaps = 116/592 (19%)

Query: 884  GQSVIATVMALPSSSTAGRL-------LLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 936
            GQ + A ++   S ST  R        +L L       +  SK +  + +Y VG++++A 
Sbjct: 230  GQKIKARILYDVSPSTPPRFALSVVEHVLKLSPKHAAGSDGSKDSSLQDAYPVGAILEA- 288

Query: 937  ITEIKPLELRLKFGI------GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 990
               +K + +  + G+      G  G +HI++V+D+    +     ++K+G    AR+   
Sbjct: 289  ---VKVVRVEAERGLVVEISSGLEGFVHISQVSDEHVPSLSPSSGHWKVGTVHKARVTGH 345

Query: 991  SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1050
                        +LS +PS+L       +   +  +V +G+ + G V ++      +++S
Sbjct: 346  -----FHLDGCLQLSFRPSVL------EQKFLQVGEVQVGELIKGTVKRLTESALFVSMS 394

Query: 1051 RHLKAQLFILDSAYEPSELQEFQRRFHIG--------KAVTGH----------------- 1085
              +     +  + Y    L+  QRRF  G        KAV                    
Sbjct: 395  GSVDG--VVWPNHYADIALKHPQRRFRPGVVAELQKDKAVITLQPTQVRALLSLNNLANR 452

Query: 1086 ----------------------VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1123
                                  V+S N EK  + +  +P +    +  +   + N+ T I
Sbjct: 453  RGVSLTQLRTSLKTDEKLQDLVVVSRNPEKGFVLVATKPKE---KESLLQKGSLNLDT-I 508

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ-FDPLSG 1182
              G +VGGR+  +  G  G +V++   + G +H T        D    +D G+ F P+  
Sbjct: 509  QVGQVVGGRV--LRHGRQGALVKLTSSISGTLHPT--------DTCDDFDSGRAFPPVDS 558

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV--DTPGKHLEKIE 1240
                  +K  VL I R  R     +L+L        ST  S L  D   D     ++ + 
Sbjct: 559  -----ILKAVVLSIDRDKR-----QLTL--------STRPSRLYPDQAKDVKDHEVDGVS 600

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            DL     V+G++KNV   G F+ML R +DA+V +  L D YV+  +  F   +LV GRVL
Sbjct: 601  DLKVGQTVRGFIKNVAEHGIFVMLGRHIDARVQIKELFDEYVKDWKSHFAANQLVKGRVL 660

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            SV+   K+VE+T ++ D +  ++S+ + L++L  G  V G++K++E YGLFI I  + L 
Sbjct: 661  SVDFDKKQVEMTFRSGDLKRDARSQ-STLADLSEGQKVDGRVKKIEDYGLFIEIAGSKLS 719

Query: 1361 GLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
            GLCH SELS++   ++      +R  ++VK  IL +D+EKRRIS G+K SYF
Sbjct: 720  GLCHKSELSDNKDADVTLALRSFRENDQVKAVILSIDREKRRISFGLKPSYF 771



 Score =  140 bits (354), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/201 (38%), Positives = 127/201 (63%), Gaps = 7/201 (3%)

Query: 1496 TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1555
            + E  T D++  R  K+++++E EQ++ A     +    P +  +FER++  SPNSS++W
Sbjct: 884  SSEENTDDDEQGRKKKRRKRKEIEQDLTAD----MHTKMPESNTDFERVLLGSPNSSYLW 939

Query: 1556 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1615
            I+YM+F L +++VEKAR IA RAL+TIN REE EKLN+WVA  NLEN +G   +E++   
Sbjct: 940  IQYMSFQLQISEVEKAREIARRALRTINFREEQEKLNVWVALLNLENSFGT--DESLEAT 997

Query: 1616 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ 1675
            F+ A ++ D K +HL L  + +++E+++ A+E   +  KKF  S KVW    +  LK+  
Sbjct: 998  FKDAARHNDSKTIHLRLANILDQSEKHEKAEEQYKRTCKKFSQSSKVWTLFGEHYLKRGM 1057

Query: 1676 -EGVQAVVQRALLSLPRHKHI 1695
             E  + ++ R+L SL + K +
Sbjct: 1058 LEEARKLLPRSLQSLEKRKRM 1078



 Score =  129 bits (324), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 193/838 (23%), Positives = 336/838 (40%), Gaps = 145/838 (17%)

Query: 35  PILDNEIEANEDNLLPTIFHV---GQLVSCIV-------------LQLDDDKKEIGKRKI 78
           P  D E +    + +P +FH+   GQ V  +V             L    D+ +   R+I
Sbjct: 16  PPSDEEDDGPSKSRIPDLFHIFPAGQYVRAVVSAVHPPGATDASVLGRARDEVQKASRRI 75

Query: 79  WLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-----RNNLA 133
            LSL    +   +S   ++ G  L+A VKSIEDHGYIL  G+P  +GFL      +    
Sbjct: 76  ELSLIPEKVNASVSKSDLRAGFTLSAAVKSIEDHGYILDLGIPDVSGFLSFKEAKKGPFG 135

Query: 134 ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVST 193
           +++ + V  G L+   V  I    +   +S D  +V      ++   S+  ++PG +V +
Sbjct: 136 DDNKLPV--GRLIDVCVVKITGNGRTCTVSVDSASVRDASLSEVA--SVTSILPGTLVQS 191

Query: 194 RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDP-TSR 251
            V +++ +G+ L  L YF GT+D FHL+      + + +Y   +K+ ARIL+ V P T  
Sbjct: 192 LVTAVVPDGLNLQVLGYFVGTIDQFHLR----AGDVEENYKVGQKIKARILYDVSPSTPP 247

Query: 252 AVGLTLNPYLLHNRAPPSHVK---------------VGDIYDQSKVVRVDRGLGLLLDIP 296
              L++  ++L  +  P H                 VG I +  KVVRV+   GL+++I 
Sbjct: 248 RFALSVVEHVL--KLSPKHAAGSDGSKDSSLQDAYPVGAILEAVKVVRVEAERGLVVEIS 305

Query: 297 STPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFE 353
           S       +V IS V++E V  L      +K G+  + R+ G  HL+G      + S  E
Sbjct: 306 S---GLEGFVHISQVSDEHVPSLSPSSGHWKVGTVHKARVTGHFHLDGCLQLSFRPSVLE 362

Query: 354 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 413
                  +V+ G ++KG V  +      V   G V  +    H ++  +  P ++F+ G 
Sbjct: 363 QKFLQVGEVQVGELIKGTVKRLTESALFVSMSGSVDGVVWPNHYADIALKHPQRRFRPGV 422

Query: 414 ELVFRVLGVKSKRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRF 471
                V  ++  +  +T + T V++ L++  L++    +   +     T  +     V  
Sbjct: 423 -----VAELQKDKAVITLQPTQVRALLSLNNLANRRGVSLTQLRTSLKTDEKLQDLVVVS 477

Query: 472 YNGVQGFA-----PRS-ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 525
            N  +GF      P+  E  L  G        VGQVV  R++                  
Sbjct: 478 RNPEKGFVLVATKPKEKESLLQKGSLNLDTIQVGQVVGGRVLR----------------- 520

Query: 526 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI--PTEHLADHLEHATVMKSV 583
              +  LVKL S +SG +                +  G    P +         +++K+V
Sbjct: 521 HGRQGALVKLTSSISGTLHPTD--------TCDDFDSGRAFPPVD---------SILKAV 563

Query: 584 IKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCN 637
           +         L +D +   L LS + S +   Q            S +     V G++ N
Sbjct: 564 V---------LSIDRDKRQLTLSTRPSRLYPDQAKDVKDHEVDGVSDLKVGQTVRGFIKN 614

Query: 638 IIETGCFVRFLGRLTGFAPRSKAV-DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
           + E G FV  LGR      + K + D    D    +   Q V+  +L V+ +  ++ ++ 
Sbjct: 615 VAEHGIFV-MLGRHIDARVQIKELFDEYVKDWKSHFAANQLVKGRVLSVDFDKKQVEMTF 673

Query: 697 KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-----IIGSVIEGKVHES 751
           +         S        +  +A L   +     +K +E +     I GS + G  H+S
Sbjct: 674 RSGDLKRDARS--------QSTLADLSEGQKVDGRVKKIEDYGLFIEIAGSKLSGLCHKS 725

Query: 752 NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFI 809
                 +S  + +DV        LA  +      ++A IL + + +R +   LK  + 
Sbjct: 726 E-----LSDNKDADV-------TLALRSFRENDQVKAVILSIDREKRRISFGLKPSYF 771


>gi|67587680|ref|XP_665268.1| rrp5 protein [Cryptosporidium hominis TU502]
 gi|54655854|gb|EAL35037.1| rrp5 protein [Cryptosporidium hominis]
          Length = 410

 Score =  160 bits (404), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 162/298 (54%), Gaps = 36/298 (12%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            P T D+FERL+ +  + S +WI+YM++ L + D++KAR +AER+L+ I+++EE E+ NIW
Sbjct: 106  PSTIDDFERLLITHRDVSSLWIRYMSYYLDLEDLDKARMVAERSLKQISVKEEMERWNIW 165

Query: 1595 VAYFNLENEYGNP----------------PEEAVVK----VFQRAL-QYCDPKKVHLALL 1633
            +AY N+E  YG                   E+ + K    +  RAL    D KK+++ + 
Sbjct: 166  IAYINMEIAYGKNELLTSKGENNISSLGGKEDGIPKNVRQILDRALMNVTDQKKLYIQIF 225

Query: 1634 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPR 1691
                R  + +    LL + +KKF+ S K+W+  +  L +   Q++    V+Q++L S+ +
Sbjct: 226  SSLRRHSKEEQGLALLEEGLKKFQTSRKLWVTYLTCLYESDNQKKARDEVIQKSLKSVSK 285

Query: 1692 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--------- 1742
             K ++ I+  A LEF+ G  +RGR++FE +L E  KR DLWS Y D   +L         
Sbjct: 286  DKVVRLITDIARLEFEYGNINRGRTIFENLLEENSKRMDLWSQYFDILTKLCSKDDPKSN 345

Query: 1743 ----GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796
                  +++ R +F   I  +  P+ MK +F ++L +EK  G  +  ++V+  A+ YV
Sbjct: 346  SSMADHIEMARSIFSSCIEKNFKPRSMKMIFTRWLSFEKEFGSLQTQKHVQDLAINYV 403


>gi|340387142|ref|XP_003392067.1| PREDICTED: protein RRP5 homolog, partial [Amphimedon queenslandica]
          Length = 209

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 137/207 (66%), Gaps = 3/207 (1%)

Query: 1587 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1646
            E+EKLN+WV + NLEN YG+   E++ +VF+RALQ  D  +++  L+ +Y  + + + AD
Sbjct: 1    EDEKLNLWVGFLNLENMYGDS--ESLDQVFKRALQQNDQFEIYTRLIDIYVTSNKPESAD 58

Query: 1647 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1705
            +L   M KKF  + +VW +  + L++Q + +  + ++QR+  SL + +H+    Q A LE
Sbjct: 59   QLYQIMCKKFSSNIQVWSQYGRFLMEQGKADLARKILQRSFKSLTKKQHVDITKQFAQLE 118

Query: 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765
            FK G  +RG ++FE ++S YP++ D+WS+Y+D   + G++D +R +FERA+SL L   K 
Sbjct: 119  FKYGEMERGCTLFENLVSSYPRKVDIWSVYIDMLTKKGEMDRVRDVFERAVSLKLSSVKK 178

Query: 1766 KFLFKKYLEYEKSVGEEERIEYVKQKA 1792
            +FL+K+Y+E+E+  G +  +E V+ K+
Sbjct: 179  QFLYKRYIEFERKHGTQSLVETVQAKS 205


>gi|255595431|ref|XP_002536303.1| hypothetical protein RCOM_1962080 [Ricinus communis]
 gi|223520127|gb|EEF26080.1| hypothetical protein RCOM_1962080 [Ricinus communis]
          Length = 109

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 94/110 (85%), Gaps = 1/110 (0%)

Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1309
            GYVKNV  KGCFI LSRK+DAK+LLSNLSD +V SPE+EFPIGKLV GRVLSVEPLSKRV
Sbjct: 1    GYVKNVAPKGCFIFLSRKIDAKILLSNLSDEFVVSPEEEFPIGKLVTGRVLSVEPLSKRV 60

Query: 1310 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
            EVTLK  ++++  +SE+N+LS L+VGD   G+IKRVE YGLFI I++TNL
Sbjct: 61   EVTLK-KNAKSTGKSELNDLSRLNVGDTASGRIKRVEPYGLFIAIDHTNL 109


>gi|300123256|emb|CBK24529.2| unnamed protein product [Blastocystis hominis]
          Length = 967

 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 169/289 (58%), Gaps = 8/289 (2%)

Query: 1513 KEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1571
            K  + RE EI A E  L  + A P +  +FERL+   P SS +WI+Y ++ LS+ D  KA
Sbjct: 677  KRPQLREAEIAAKERSLASQSAQPASEADFERLLVGQPTSSELWIRYASWFLSLGDAAKA 736

Query: 1572 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1631
            R++  RALQ++    E+E+ N+W+A  NLE+E+G+  E A+  V++ A Q  +P++  L 
Sbjct: 737  RAVLRRALQSVPGHLEDERANLWLALLNLESEFGD--EAALRDVYKEARQAMEPRRAGLH 794

Query: 1632 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLS 1688
            L  L E  ++      +  ++ K+ +   KVWL   +  LKQ   ++ G    ++RA  +
Sbjct: 795  LAALLEAKQKWAEVYSVWKQLAKENRGDVKVWLGWCECFLKQGLPRESG--ETLRRAQEA 852

Query: 1689 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1748
            + R +  + +S  AIL ++    D+GR++FE ++S    R DLW++Y+DQE + G+V+ +
Sbjct: 853  VGRSEKARLLSGYAILLYRYKQRDQGRTIFEDLVSSLKNRLDLWNLYVDQETKAGNVEYV 912

Query: 1749 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
            RGLF R + L +     K +FKK++ +E + G+EE    V++   +Y++
Sbjct: 913  RGLFGRMVELKMSVNSAKRVFKKWIAFEDAHGDEEHAAKVEEIVQQYID 961


>gi|302776674|ref|XP_002971488.1| hypothetical protein SELMODRAFT_412223 [Selaginella moellendorffii]
 gi|300160620|gb|EFJ27237.1| hypothetical protein SELMODRAFT_412223 [Selaginella moellendorffii]
          Length = 382

 Score =  157 bits (396), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 161/307 (52%), Gaps = 71/307 (23%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 147  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 206

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
             +E++L  + S+ +S            G+IV   I  +E++G+FI++  +    LCHV+E
Sbjct: 207  HIEMSLAATTSQDSS-----GWKKFGAGEIVSDCIHNIEAFGIFISLAKS---CLCHVAE 258

Query: 1368 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +S D + ++ T+Y+ G+ V+VKILKVD E +RISLGMK+SY   + D +    E   +EA
Sbjct: 259  VSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKASYLTPE-DGI----EPMEEEA 313

Query: 1428 IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDN 1487
            I E  S N + L++N +   +D      D GS    Q+   A+    E  L  +QP    
Sbjct: 314  INEEPS-NTNVLMDNDARVEEDY----LDLGSKRFPQLCMEAAAK--EKLLQKDQP---- 362

Query: 1488 GISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS 1547
                                                           P T D+FERLV +
Sbjct: 363  -----------------------------------------------PETKDDFERLVAA 375

Query: 1548 SPNSSFV 1554
            SPN S++
Sbjct: 376  SPNKSYM 382



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 80/299 (26%)

Query: 1042 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1101
            + WA L +S HLK  LF        SEL+ F+ RF +G     H+ S+N E+K + L L 
Sbjct: 56   DNWAWLVLSPHLKGCLF--------SELERFKERFKVGNPFQCHIRSVNHERKQVDLSLH 107

Query: 1102 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ--------------- 1146
                      +  S++  +    +GD++G RI+++ +GVGG  VQ               
Sbjct: 108  ----------LKTSDEQFK----KGDLLGRRITRVFAGVGGHTVQGRWESFGKVHGFVKN 153

Query: 1147 ---------IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
                     + P L  R+    L N  V +P        F P      G+ +  ++L I 
Sbjct: 154  VTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAE-----MFPP------GKVISGRILSIE 202

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1257
                 + H+E+SL       ++T S D S             +      IV   + N+ +
Sbjct: 203  PL---SGHIEMSL-------AATTSQDSSG-----------WKKFGAGEIVSDCIHNIEA 241

Query: 1258 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
             G FI L++     V  + +S  +++     + +G+ V  ++L V+  +KR+ + +K S
Sbjct: 242  FGIFISLAKSCLCHV--AEVSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKAS 298


>gi|302811444|ref|XP_002987411.1| hypothetical protein SELMODRAFT_426255 [Selaginella moellendorffii]
 gi|300144817|gb|EFJ11498.1| hypothetical protein SELMODRAFT_426255 [Selaginella moellendorffii]
          Length = 378

 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 126/185 (68%), Gaps = 12/185 (6%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V G+VKNVT KGCF++LS  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 160  VHGFVKNVTEKGCFVILSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 219

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV------G 1361
             +E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++        
Sbjct: 220  HIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLPESHVFLVCAPGC 274

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1421
            LCHVSE+S + + ++ T+Y+ G+ V+VKILKVD E +R+SLGMK+SY   + D ++   E
Sbjct: 275  LCHVSEVSYNFIQDLSTLYKVGQWVQVKILKVDAETKRVSLGMKASYLTPE-DGIKPMEE 333

Query: 1422 EESDE 1426
            E  +E
Sbjct: 334  EAINE 338



 Score =  103 bits (258), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 143/324 (44%), Gaps = 83/324 (25%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
            V+I Q V  YV +V + WA L +S HLK  LFILD++  PSEL+ F+ RF +G     H+
Sbjct: 46   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDNPSELERFKERFKVGDPFQCHI 105

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1146
             S+N E+K + L L P       KT D      + F  +GD++G RI+++ +GVGG  VQ
Sbjct: 106  RSVNHERKQVDLSLHP-------KTRD------EQF-KKGDLLGRRITRVFAGVGGHTVQ 151

Query: 1147 ------------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
                                    + P L  R+    L N  V +P        F P   
Sbjct: 152  GRWESLGKVHGFVKNVTEKGCFVILSPSLEARIQLKNLSNSFVQNPAE-----MFPP--- 203

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
               G+ +  ++L I      + H+E+SL       ++T S D S             +  
Sbjct: 204  ---GKVISGRILSIEPL---SGHIEMSL-------TATTSQDSS-----------GWKKF 239

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL----------SNLSDGYVESPEKEFPIG 1292
                IV G + N+ + G FI L    ++ V L          S +S  +++     + +G
Sbjct: 240  GAGEIVSGRIHNIEAFGIFISLP---ESHVFLVCAPGCLCHVSEVSYNFIQDLSTLYKVG 296

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTS 1316
            + V  ++L V+  +KRV + +K S
Sbjct: 297  QWVQVKILKVDAETKRVSLGMKAS 320



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 28/268 (10%)

Query: 91  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGID-----VKPGL 144
           ++ ETV     +  YV+ ++D+   L    P   G L   + ++N S ++      K G 
Sbjct: 41  ITFETVTIEQSVIRYVQEVKDNWAWLVLS-PHLKGCLFILDTSDNPSELERFKERFKVGD 99

Query: 145 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK-DLKGISIDLL---VPGMMVSTR------ 194
             Q  +RS++  RK V LS  P T  +   K DL G  I  +   V G  V  R      
Sbjct: 100 PFQCHIRSVNHERKQVDLSLHPKTRDEQFKKGDLLGRRITRVFAGVGGHTVQGRWESLGK 159

Query: 195 ----VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 250
               V+++ E G  +         + + +L N+F   N    +   K ++ RIL ++P S
Sbjct: 160 VHGFVKNVTEKGCFVILSPSLEARIQLKNLSNSF-VQNPAEMFPPGKVISGRILSIEPLS 218

Query: 251 RAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP---VSTPAYVT 307
             + ++L      + +       G+I   S  +      G+ + +P +    V  P  + 
Sbjct: 219 GHIEMSLTATTSQDSSGWKKFGAGEIV--SGRIHNIEAFGIFISLPESHVFLVCAPGCLC 276

Query: 308 -ISDVAEEEVRKLEKKYKEGSCVRVRIL 334
            +S+V+   ++ L   YK G  V+V+IL
Sbjct: 277 HVSEVSYNFIQDLSTLYKVGQWVQVKIL 304


>gi|302776688|ref|XP_002971494.1| hypothetical protein SELMODRAFT_412242 [Selaginella moellendorffii]
 gi|300160626|gb|EFJ27243.1| hypothetical protein SELMODRAFT_412242 [Selaginella moellendorffii]
          Length = 606

 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 139/219 (63%), Gaps = 19/219 (8%)

Query: 1228 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1287
            D+  PG+    +E       + G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P +
Sbjct: 201  DLKRPGRGKMGLE-------LSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAE 253

Query: 1288 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1347
             FP GK+++GR+LS++PLS  +E++L  + S+ +S            G+IV G+I  +E+
Sbjct: 254  MFPPGKVISGRILSIKPLSGHIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEA 308

Query: 1348 YGLFITIENTNLV------GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1401
            +G+FI++  +++        LCHVSE+S D + ++ T+Y+ G+ V+VKILKVD E +RIS
Sbjct: 309  FGIFISLAESDVFLVCAPGCLCHVSEVSYDFIQDLSTLYKVGQWVQVKILKVDAETKRIS 368

Query: 1402 LGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1440
            LGMK+SY     +  +  +EE S+  +  + S +  +L+
Sbjct: 369  LGMKASYLTEPMEE-EAINEEPSNTNVPTIVSIHARTLV 406



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 155/360 (43%), Gaps = 60/360 (16%)

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            +LS++PS L  ++    ++  E  V+I Q V  YV +V + WA L +S HLK  LFILD+
Sbjct: 75   DLSLRPSELAGNDAACSVITFE-TVTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDT 133

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            + +PSEL+ F+ RF +G     H+      +           D +      +S +    F
Sbjct: 134  SDDPSELERFKERFKVGDPFQCHIRKRGPVRPTDYTSFCWCWDILCKADGKVSENQ---F 190

Query: 1123 IHEGDIVG---------GRISKILSGV------GGLVVQIGPHLYGRVHFTELKNICVSD 1167
            I+ G +           G++   LSG        G  V + P L  R+    L N  V +
Sbjct: 191  IYRGTVRKVLDLKRPGRGKMGLELSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQN 250

Query: 1168 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1227
            P        F P      G+ +  ++L I + + G  H+E+SL       ++T S D S 
Sbjct: 251  PAE-----MFPP------GKVISGRILSI-KPLSG--HIEMSL-------TATTSQDSS- 288

Query: 1228 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK----LDAKVLLSNLSD---G 1280
                        +      IV G + N+ + G FI L+      + A   L ++S+    
Sbjct: 289  ----------GWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGCLCHVSEVSYD 338

Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN--LSNLHVGDIV 1338
            +++     + +G+ V  ++L V+  +KR+ + +K S      + E  N   SN +V  IV
Sbjct: 339  FIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKASYLTEPMEEEAINEEPSNTNVPTIV 398


>gi|296412695|ref|XP_002836057.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629859|emb|CAZ80214.1| unnamed protein product [Tuber melanosporum]
          Length = 1070

 Score =  155 bits (393), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 183/753 (24%), Positives = 325/753 (43%), Gaps = 89/753 (11%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA------------------- 43
           + G V+++++ DL + LP  L G      ++  +L+   EA                   
Sbjct: 143 VLGCVSQISQTDLALSLPNNLTGFV-PLTSISELLNKNFEALVRDSDDDEDEDVEENIET 201

Query: 44  -----NEDNL-LPTIFHVGQLVSCIVL---QLDDDKKEIG----KRKIWLSLRLSLLYKG 90
                +ED + L ++F +G  +   V+   +  + K   G    K++I LSL   L   G
Sbjct: 202 AKSESSEDGVDLKSMFQIGPYLRAYVVSSSEPTNSKYSTGSKRFKKRIELSLDPVLTNNG 261

Query: 91  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGI-DVKPGLLLQG 148
           L+   +  G  + A V S+EDHG +++ G+ +   GFL    L +   + D K G ++  
Sbjct: 262 LTTTELVVGCTVQASVTSVEDHGLVMNLGIGNHLKGFLSSKELGKGRSVTDAKEGQVMLC 321

Query: 149 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 208
               +    K+V LS     + +  TK  K I                     GV    +
Sbjct: 322 TTIGLSSNGKIVKLSGG---LEQKPTKGGKAI---------------------GVAGKVM 357

Query: 209 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH----- 263
                 +D FH    +   + ++ +   +K+ A ++      R + L++ P++L      
Sbjct: 358 GLVDAKMDFFHASG-WEEKDIESKFKVGEKIKAHVIATYSEPRKLALSILPHVLPFTQPI 416

Query: 264 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE-EVRKLEKK 322
              P + + +  I + +K + ++  +GL LD+    V  P +V IS ++ + ++  L   
Sbjct: 417 ENEPTTILPIATIINTAKALNIEPKIGLFLDVGVPGV--PGFVHISRISSDSKIEALSND 474

Query: 323 ---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 379
              Y+  S   VRI+G+  ++GL    ++    +       D+K G VVKG +  V   G
Sbjct: 475 SGLYQTDSVHMVRIIGYNSMDGLYLVSMEQKVLDQSFLRVKDIKIGEVVKGTIDRVLHSG 534

Query: 380 -AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLV 436
             IV    G+  +    H+S+ ++  P KKF+ G E+  RVL      +++ +  KK +V
Sbjct: 535 RVIVNLAEGITGIVDELHLSDVKLKHPEKKFREGVEVKARVLLTDPPKRKVRLILKKAIV 594

Query: 437 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 496
            S   I+SSY +      + G + KI  +G  V+F+  V GF P SE+      +P    
Sbjct: 595 NSDAPIISSYKDTNSGTRSVGTLVKILPNGAIVKFFLDVCGFLPVSEMREAYIQDPHEHS 654

Query: 497 HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVDVVTPNAV 551
            VGQ V   ++S  PAS+++ +S    P    E   V L     G +VSG V   + + +
Sbjct: 655 TVGQSVNVHVLSVDPASQKLRVS-CKDPNLFGEAHKVTLAKLPPGDVVSGTVVEKSADDL 713

Query: 552 VVYVIAKGYS--KGTIPTEHLADHLEHAT--VMKSVIKPGYEFDQLLVLDN--ESSNLLL 605
           +V +   G    +G + T  L D     +  V K  ++ G + D LLVL+   E  ++ L
Sbjct: 714 IVEINGLGAEGIRGVLVTGQLTDGSRDKSLGVFKK-LRAGQKLDDLLVLEKHEERRSITL 772

Query: 606 SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 663
           S K SL+ +A+   + S    ++   +V G+V N      FV F G + G   +      
Sbjct: 773 SMKPSLVKAAKGGSMISKFEDVNEGEIVRGWVRNTTLQSLFVGFAGGIVGVVYKKDRPAE 832

Query: 664 QRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
            ++  +  Y   QS+   ++ ++    R  LSL
Sbjct: 833 VQSLPNFGYVKNQSITCRVVYIDPSERRFRLSL 865



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 164/797 (20%), Positives = 295/797 (37%), Gaps = 153/797 (19%)

Query: 360  SDVKPGMVVKGKVIAVDSFGAIVQFPGG---------------------VKALCPLPHMS 398
            +D K G V+    I + S G IV+  GG                     V A     H S
Sbjct: 311  TDAKEGQVMLCTTIGLSSNGKIVKLSGGLEQKPTKGGKAIGVAGKVMGLVDAKMDFFHAS 370

Query: 399  EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR------ 452
             +E      KFKVG ++   V+       T +  + L  S L  +  + +  +       
Sbjct: 371  GWEEKDIESKFKVGEKIKAHVIA------TYSEPRKLALSILPHVLPFTQPIENEPTTIL 424

Query: 453  ----LITHGWITKIE-KHGCFVRF-YNGVQGFAPRSELGLDPGCEP----SSMYHVGQVV 502
                +I       IE K G F+     GV GF   S +  D   E     S +Y    V 
Sbjct: 425  PIATIINTAKALNIEPKIGLFLDVGVPGVPGFVHISRISSDSKIEALSNDSGLYQTDSVH 484

Query: 503  KCRIM--SSIPA-------SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 553
              RI+  +S+          + ++ SF+    RV +   +K+G +V G +D V  +  V+
Sbjct: 485  MVRIIGYNSMDGLYLVSMEQKVLDQSFL----RVKD---IKIGEVVKGTIDRVLHSGRVI 537

Query: 554  YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 611
              +A+G + G +   HL+D  L+H    +   + G E   ++L+ D     + L  K ++
Sbjct: 538  VNLAEGIT-GIVDELHLSDVKLKHP---EKKFREGVEVKARVLLTDPPKRKVRLILKKAI 593

Query: 612  INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 671
            +NS   + S     +  +   G +  I+  G  V+F   + GF P S+  +    D  + 
Sbjct: 594  VNSDAPIISSYKDTNSGTRSVGTLVKILPNGAIVKFFLDVCGFLPVSEMREAYIQDPHEH 653

Query: 672  YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 731
              VGQSV  ++L V+  + ++ +S K          F + H +   K+            
Sbjct: 654  STVGQSVNVHVLSVDPASQKLRVSCKDPNL------FGEAHKVTLAKLPP---------- 697

Query: 732  LKWVEGFIIGSVIEGKVHE--SNDFGVVVSFEEHSDVYGFITHHQLA-GATVESGSVIQA 788
                     G V+ G V E  ++D  V ++      + G +   QL  G+  +S  V + 
Sbjct: 698  ---------GDVVSGTVVEKSADDLIVEINGLGAEGIRGVLVTGQLTDGSRDKSLGVFKK 748

Query: 789  ----------AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 838
                       +L+  +  R + LS+K   +          +A K        +D+   +
Sbjct: 749  LRAGQKLDDLLVLEKHEERRSITLSMKPSLV----------KAAKGGSMISKFEDVNEGE 798

Query: 839  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 898
             V   V       L +        + Y        Q  P   ++  QS+   V+ +  S 
Sbjct: 799  IVRGWVRNTTLQSLFVGFAGGIVGVVYKKDRPAEVQSLPNFGYVKNQSITCRVVYIDPSE 858

Query: 899  TAGRLLL--------LLKAISETETSSSK--------RAKKKSSYDVGSLVQAEITEIKP 942
               RL L           A++ T   + +        R K    Y  G L +A++  ++ 
Sbjct: 859  RRFRLSLNSVKSGEGEAPAVANTAGDTERLTVNPVDARFKHIDDYTSGRLTKAKVVSVQE 918

Query: 943  LELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARII-----------A 989
             +L +K      GRI ++ V +  D     ++  ++F  G  +  +II           A
Sbjct: 919  TQLNVKLADNVQGRIDVSLVFETWDAIKDKKSPLASFGKGSVLGVKIIGIHDARNHRFLA 978

Query: 990  KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC-----DVSIGQRVTGYVYKVDNEW 1044
             +++    K+ ++ELS +P  +    I      E C     D++       ++  +  E 
Sbjct: 979  ITHQKSNTKTPIFELSARPGHIKEEGI------ERCITKLEDITPNSTWVAFLNNISEEC 1032

Query: 1045 ALLTISRHLKAQLFILD 1061
            A   I   ++ ++ ILD
Sbjct: 1033 ARANILPGIRGRIRILD 1049



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 142/327 (43%), Gaps = 39/327 (11%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            I  G++V G I ++L   G ++V +   + G V    L ++ +  P     E +F     
Sbjct: 517  IKIGEVVKGTIDRVLHS-GRVIVNLAEGITGIVDELHLSDVKLKHP-----EKKFR---- 566

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
              EG  VK +VL      R    V L L+ ++              V++    +   +D 
Sbjct: 567  --EGVEVKARVLLTDPPKR---KVRLILKKAI--------------VNSDAPIISSYKDT 607

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
            +      G +  +   G  +     +   + +S + + Y++ P +   +G+ V   VLSV
Sbjct: 608  NSGTRSVGTLVKILPNGAIVKFFLDVCGFLPVSEMREAYIQDPHEHSTVGQSVNVHVLSV 667

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
            +P S+++ V+ K  D     ++    L+ L  GD+V G +    +  L + I      G+
Sbjct: 668  DPASQKLRVSCK--DPNLFGEAHKVTLAKLPPGDVVSGTVVEKSADDLIVEINGLGAEGI 725

Query: 1363 CHV---SELSEDHVDNIETIY---RAGEKV-KVKILKVDKEKRRISLGMKSSYFKNDADN 1415
              V    +L++   D    ++   RAG+K+  + +L+  +E+R I+L MK S  K     
Sbjct: 726  RGVLVTGQLTDGSRDKSLGVFKKLRAGQKLDDLLVLEKHEERRSITLSMKPSLVKAAKGG 785

Query: 1416 LQMSSEEESDEAIEEVGSYNRSSLLEN 1442
              +S  E+ +E  E V  + R++ L++
Sbjct: 786  SMISKFEDVNEG-EIVRGWVRNTTLQS 811



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            + ++ +G++V G I RV   G  I      + G+     LS+  + + E  +R G +VK 
Sbjct: 514  VKDIKIGEVVKGTIDRVLHSGRVIVNLAEGITGIVDELHLSDVKLKHPEKKFREGVEVKA 573

Query: 1389 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV 1445
            ++L  D  KR++ L +K +   +DA    +SS ++++     VG+  +  +L N ++
Sbjct: 574  RVLLTDPPKRKVRLILKKAIVNSDAP--IISSYKDTNSGTRSVGTLVK--ILPNGAI 626


>gi|123507674|ref|XP_001329471.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3]
 gi|121912426|gb|EAY17248.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3]
          Length = 1601

 Score =  154 bits (389), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 313/1423 (21%), Positives = 537/1423 (37%), Gaps = 288/1423 (20%)

Query: 19   LPGGLRGLARAADALDPILDNEIEA--NEDNL--LPTIFHVGQLVSCIVLQLDDDKKEIG 74
            LPG  RG  +  +  DP L     A  N++ L  L   F++G  +   V+         G
Sbjct: 75   LPGNARGTLQLTEINDPFLQRLQHAIKNDEELPELENFFNIGDFLMATVISA-------G 127

Query: 75   KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE 134
               + LS+R +L+    S+   +EG +    VKS ED GYI+  G  + T FLP      
Sbjct: 128  THPVELSIRPNLVN---SMIEPEEGRIFWGAVKSKEDRGYIIDLGKENVTAFLPF----- 179

Query: 135  NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISI-------DLLV 186
                   P  L  G      +   V  L    +++ KC +TK     S+       D L 
Sbjct: 180  -------PAQLEVG------QPAFVTLLKKTSESIYKCELTKKDFFPSVPTVKPFFDTLR 226

Query: 187  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 246
            P  ++   V S   NG +      F G    +         +W         V  R + +
Sbjct: 227  PIDVLDGLVTSNFTNGALAINAQSFNGFCSKY---------SWPPGLTNGNNVQVRPVLI 277

Query: 247  DPTSRAVGLTLNPYLLHNRAPPS-HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 305
            D   + +  T  P +++   P     K+G     SKV R+   +G+   +P         
Sbjct: 278  DHAQKTIWFTAIPRIVNGERPYCLDAKIGSKV-TSKVSRIRYNVGIEFTMPDN------- 329

Query: 306  VTISDVAEEEVRKL--EKKYKEGSCVR-----VRILGFRHLEGLATGILKASAFEGLVFT 358
                    E +R    EK+ K  + +      VRI   R ++ L          +  VF+
Sbjct: 330  --------ENLRVFIPEKETKSHALMAGQDHVVRITERRPIDDLLLAADDPEIIDLAVFS 381

Query: 359  HSDVKPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
              DV PG ++   + A+ D  G  V+    + ALCP+ +       K G   K       
Sbjct: 382  ADDVHPGQILDATISAINDKIGIFVELSPFLTALCPVSYCDNDPEPKKGDVKKC------ 435

Query: 418  RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYN 473
             VL V    + V  K+  V S+L  + S   A +    +  TH  + K  K    V F N
Sbjct: 436  VVLSVSEGHVRVAMKEKFVTSELPRVESLEIAHNLCESKEWTHALVRKSGKSAIIVEFIN 495

Query: 474  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 533
            G+ G    S L +  G + S  Y  G V+K  I SS+    +IN           E  ++
Sbjct: 496  GLVGMIRSSSLPVSQGQDISKQYPQGYVIKTMI-SSVDGD-KINCV-----VSTDESQIL 548

Query: 534  KLGSLVSGVVDVVTPNAVVVYVIAK-GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
             LG   +  VD  T +AV V V AK G     I   H +D+   + ++   +  G +   
Sbjct: 549  TLGQTCTVTVDRFTEDAVYVRVPAKYGEINSVIQATHFSDYEPLSRLIFKNLNIGDKLRH 608

Query: 593  LLVLDNESSN--LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
              ++ N  +N     + K  +  + + +P D   I       G+V  I   G FV F GR
Sbjct: 609  ACLIRNPGTNAPAYFTMKRCIRENTESIPKDTKSIKAGEHYFGFVSGIQNYGSFVSFFGR 668

Query: 651  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST------ 704
             +G               S+   +G SV +  +D  +E G I L+   +   S       
Sbjct: 669  ASGLIH------------SRQLTLGDSVNA-FVDQVTEDGHIRLTTPIADGESIKFLDSF 715

Query: 705  --DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 762
              DA  + + +L++++I                        ++G   +S+++    S++ 
Sbjct: 716  LKDAKKLNDKYLIDQEIQ-----------------------VQGDGEKSDEY---FSYQL 749

Query: 763  HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 822
              D   +I    L    V++G+ ++ A  DV           K+VF              
Sbjct: 750  DED---WIC---LTNEKVKAGTTLKIAYADVLS---------KSVF-----------AVL 783

Query: 823  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 882
              K+ R    ++ V  TV  + E +     + ++   N  I    + +YN +   +K+  
Sbjct: 784  PPKKPRSIENNVVVKATVIGVFEPI----FICTV---NGRIVICPMVNYNNKT--EKKIA 834

Query: 883  NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 942
             G+ +  TV+   S S +     +LK   +    S          ++   V A IT +  
Sbjct: 835  VGEELEITVVD--SRSESDETFEVLKGYPQYLLKS----------EISQNVVATITSVND 882

Query: 943  LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1002
            +    K   G   RIH +++    S V E       +GQ V   ++   N      +FL 
Sbjct: 883  ISCNAKLNDGRTVRIHRSQL----SQVPE-------VGQQVKGSLMNGDN-----ATFLI 926

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL--FIL 1060
                 P  +              D  +GQ+VTG + KV N+   L++S  +   +    L
Sbjct: 927  TNPDSPQKIE-------------DFKVGQQVTGVITKVSNDSLRLSMSPFVLGTVSSLQL 973

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
             S       +     + +G    G V S++++   +  +   F   +             
Sbjct: 974  SSTNRKVVDKPLAESYSVGDLFEGWVSSVSEKMITVTGIDPSFSSNV------------- 1020

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                         +K+L       ++ G +   +V    LK + V+D +   DE QF+PL
Sbjct: 1021 -----------EFAKVLK------IKTGDYATVKVGNGSLKKLDVTDVI---DEYQFNPL 1060

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
            S   +G     KV+++                    +S  N S   +D+    K + KIE
Sbjct: 1061 SRLKKG-----KVIDVV------------------NVSEENVSMKLSDITGTPKEI-KIE 1096

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            +     I+QGYV +       + L+R +  ++   +++D +++     +P+G +V  +++
Sbjct: 1097 E---GEILQGYVCHAIKGALLVRLARNVTGRLPFGSIADCFIQDAAALYPLGTVVTVKIM 1153

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN-TNL 1359
                  K+ +  +  S  R+        + +L VGD+V G I      G+F+ + +  N 
Sbjct: 1154 ------KKTDSEITLSSKRSDITGVALTIQDLKVGDVVGGFITAANKNGVFVRLNDYQNK 1207

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
             GL H S L  +  D +  +     +V V++L+VD EK RISL
Sbjct: 1208 SGLVHHSML--NGKDPLSFVNLVNTRVDVEVLQVDLEKERISL 1248



 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 131/538 (24%), Positives = 241/538 (44%), Gaps = 57/538 (10%)

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1349
            P+ +L  G+V+ V  +S+   V++K SD  T +  EI     +  G+I+ G +       
Sbjct: 1059 PLSRLKKGKVIDVVNVSEE-NVSMKLSDI-TGTPKEIK----IEEGEILQGYVCHAIKGA 1112

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
            L + +   N+ G      +++  + +   +Y  G  V VKI+K  K    I+L  K S  
Sbjct: 1113 LLVRLAR-NVTGRLPFGSIADCFIQDAAALYPLGTVVTVKIMK--KTDSEITLSSKRSDI 1169

Query: 1410 KNDADNLQMSSEEESD------EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLA 1463
               A  L +   +  D       A  + G + R +  +N S  V    +  +D  S V  
Sbjct: 1170 TGVA--LTIQDLKVGDVVGGFITAANKNGVFVRLNDYQNKSGLVHHSMLNGKDPLSFV-N 1226

Query: 1464 QIESRASVPPLEVNLDDEQPDMD-NGI-----------------SQNQGHTDEAKTID-- 1503
             + +R  V  L+V+L+ E+  +  N I                   ++G   E   ID  
Sbjct: 1227 LVNTRVDVEVLQVDLEKERISLKFNEIHSQNQPQEQEQQQEMETESDEGAEPEEVEIDLD 1286

Query: 1504 --------EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1555
                           K+  +++ E++I+  E + ++  AP++  EF   + ++P+SS +W
Sbjct: 1287 EWLSDEEKVDEEEKEKEIRRKQTEEDIQRLEAKQIDPSAPKSDKEFTAALVANPHSSKLW 1346

Query: 1556 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE--EAVV 1613
            I YM F+ +  D ++A  I E+ L  + I E+ EK NI+ A   L      P    E  +
Sbjct: 1347 ISYMEFVYAGGDSKRAMEIGEQGLDKLPIGEKTEKSNIFQALITLIVLSAEPKHFMEECI 1406

Query: 1614 KVFQRALQYCDPKKVHLALLGLYERTEQNK--LADELLYKMIKKFKHSCKVWLRRVQRLL 1671
             + +RA Q  D +   +  L   +   QN+   + E     ++K K +  +W   +  LL
Sbjct: 1407 PIVERAAQTIDEE---VMWLRFAKTVHQNRKDFSQEAWKVALRKVKQNVTMWSSYLNSLL 1463

Query: 1672 KQQQ-EGVQAVVQRALLSLPR---HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1727
            + ++ +  +  ++R L    +    + ++   Q  I E++N   + GR+MFE +++E+P 
Sbjct: 1464 QDKKVDFAKDELKRCLSGTFQGLAKESVEVRKQFGISEYENEYTEHGRTMFENLINEFPT 1523

Query: 1728 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1785
            +  LW+ Y+D E + G+    R +FER  +L L   +MK   KK+  +E+  G +  I
Sbjct: 1524 KYQLWNAYVDAECKYGEHLKARNIFERMTTLDLKIDRMKQTLKKWRAFEEKNGNDPAI 1581


>gi|302824300|ref|XP_002993794.1| hypothetical protein SELMODRAFT_431822 [Selaginella moellendorffii]
 gi|300138357|gb|EFJ05128.1| hypothetical protein SELMODRAFT_431822 [Selaginella moellendorffii]
          Length = 433

 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 142/221 (64%), Gaps = 19/221 (8%)

Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1309
            G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK++ GR+LS+EPLS  +
Sbjct: 218  GFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVILGRILSIEPLSGHI 277

Query: 1310 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV------GLC 1363
            E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++        LC
Sbjct: 278  EMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGCLC 332

Query: 1364 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1423
            HVS +S D + ++ T+Y+ G+ V+VKILKVD E +RISLGMK+SY     +++++  E  
Sbjct: 333  HVSGVSYDFIQDLSTLYKVGQCVQVKILKVDAETKRISLGMKASYLT--PEDIELMEE-- 388

Query: 1424 SDEAIEEVGSYNRSSLLENSSVAVQD-MDMESEDGGSLVLA 1463
              EAI E  S N + L++N     +D +D+ S+    L ++
Sbjct: 389  --EAINEEPS-NTNVLMDNDEREEEDYLDLASKRFPQLCMS 426



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 149/350 (42%), Gaps = 84/350 (24%)

Query: 1003 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            +LS++PS L  ++    ++  E  V+I Q V  YV +V + WA L +S HLK  LFILD+
Sbjct: 75   DLSLRPSELAGNDAACSVITFE-TVTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDT 133

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG---------------- 1106
            + +PSEL+ F+ RF +G     H+ S+N E+K + L L+   DG                
Sbjct: 134  SDDPSELERFKERFKVGDPFQCHIRSVNHERKQVDLSLQKQADGSHEFLLVLADILCKAD 193

Query: 1107 --ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1164
              +S+   D   D+  +   EG    G +  +     G  V + P L  R+    L N  
Sbjct: 194  GKVSENFNDTWIDDPASLFTEGQF--GFVKNVTE--KGCFVVLAPSLEARIQLKNLSNSF 249

Query: 1165 VSDPLSGYDEGQ--------FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1216
            V +P   +  G+         +PLSG                      H+E+SL      
Sbjct: 250  VQNPAEMFPPGKVILGRILSIEPLSG----------------------HIEMSL------ 281

Query: 1217 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL-- 1274
             ++T S D S             +      IV G + N+ + G FI L+   ++ V L  
Sbjct: 282  -TATTSQDSS-----------GWKKFGAGEIVSGRIHNIEAFGIFISLA---ESDVFLVC 326

Query: 1275 --------SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
                    S +S  +++     + +G+ V  ++L V+  +KR+ + +K S
Sbjct: 327  APGCLCHVSGVSYDFIQDLSTLYKVGQCVQVKILKVDAETKRISLGMKAS 376



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 667 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 717
           DLS  Y VGQ V+  IL V++ET RI+L +K S  +  D   M+E  + EE
Sbjct: 344 DLSTLYKVGQCVQVKILKVDAETKRISLGMKASYLTPEDIELMEEEAINEE 394


>gi|257206022|emb|CAX82662.1| putative DnaJ (Hsp40) homolog, subfamily C, member 2 [Schistosoma
           japonicum]
          Length = 1870

 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 187/793 (23%), Positives = 339/793 (42%), Gaps = 124/793 (15%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE-----DNL--LPTIFHVGQ 57
           GVV  +++  L I LP G  G     D  D   +   E+ E     D+L  L  +F VGQ
Sbjct: 9   GVVKSIHKLYLEIQLPHGFLGRVNIYDISDKYTELLRESAETGVIHDDLVELSEMFKVGQ 68

Query: 58  LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 117
           +V C + + D+ +     ++  +SL   ++ K +  + ++  MV    + S EDHGYI+ 
Sbjct: 69  IVRCFIKESDNSRGGGSNKRYLVSLNPKMVNKSVISKNLKPYMVFVGSIVSNEDHGYIVD 128

Query: 118 FGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT--- 174
            G+P  + FLP++ + +N  I    G L+       D +    ++SS  D VSK  T   
Sbjct: 129 SGVPRMSCFLPKDQVDDNPNI----GSLIAFTPYVSDPSN---FVSSTSDRVSKVTTRLD 181

Query: 175 ------KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
                 K    ++ D ++PG  ++  +   + + ++  F  YF           + P ++
Sbjct: 182 PTLSVLKSNSRVNFDCILPGTCLNASIVKKVTSVLVAEFSDYFI----------SVPRSH 231

Query: 229 W---KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---------VGDI 276
           +   K DY     V   I+FVDP+++ +  +L P+L++    PS +K         VG  
Sbjct: 232 YDGCKEDYQIGANVVVCIIFVDPSAKQLTGSLLPHLVN--PIPSILKISELLFRCPVGTR 289

Query: 277 YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRIL 334
           +  S V RV++   +L+ +P T  S      +  + + E +  E  K    GS +  RI+
Sbjct: 290 FSGSLVERVNKR-AVLVKLPKTNGSK----AVIRIHKTETKNNENFKSLAVGSKLTCRII 344

Query: 335 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 394
           G   LE +A   +          + +++KPG  V   V      G +V   G +  L P 
Sbjct: 345 GHDFLENVAVATINKKLLTVPFLSLNELKPGYKVLATVKRYSKTGIVVHIEGRLHGLIPY 404

Query: 395 PHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSS---YAE- 448
            H ++  + +  +KFK G ++   VL +   + ++ +T K  LV S+  +  S   Y   
Sbjct: 405 LHTTDINLKEYKEKFKAGEKVSCIVLQLDECANKLILTAKPGLVNSEFPVFGSREMYTAL 464

Query: 449 ---ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 505
               TDRL+  G++ K+ + G  +   + V+G+ P+ E GL       + ++ GQV+K +
Sbjct: 465 EKGNTDRLLVIGFVVKVSEKGLLISGLDNVRGWIPKRETGLADEDILQTNFYRGQVLKMK 524

Query: 506 IM---------------SSIPASRRINLSFMMKPTRVSED---DLVKLGSLVSGVVDVVT 547
                             SI +    +L F  K  + S+    D V +G   S  V+ V 
Sbjct: 525 FKREINISPTNQMEGDNQSIRSKYMFSLKFHSKKVKSSQSIFLDSVHIGQRFSATVNRVE 584

Query: 548 PNAVVVYVIAKGYSKGTIPT---------EHLADHLEHATVM---KSVIKPGYEFD---- 591
              + V + A   S  T+ +           L+D+  +  ++      +K G   D    
Sbjct: 585 DTGISVNLYATKDSNNTMTSVLGTGFLSFSQLSDYESNQQLLCRYTKNMKSGSTLDWNNS 644

Query: 592 --QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIET-- 641
             +++V+D     +++SA+ +LI +A     DAS+      +  ++ + G++    E   
Sbjct: 645 AREVVVIDKGKQTVIVSARPTLIWAAGNPKIDASNDVNMVDLQTSTTMPGFLRTFDELQI 704

Query: 642 --------------GCFVRFLGRLTGFAPRSKAVDGQ---RADLSKTYYVGQSVRSNILD 684
                         G FVRF   + G AP+    D +     + ++ + VG +V + I++
Sbjct: 705 GGQWFAWVSHHKDYGVFVRFPAGIYGLAPKHLLSDFRAPSNTNWAELFPVGATVIAKIVE 764

Query: 685 VNSETGRITLSLK 697
           V  E      SL+
Sbjct: 765 VTPEKRHCLASLR 777



 Score = 47.4 bits (111), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 109/281 (38%), Gaps = 69/281 (24%)

Query: 1513 KEKEEREQEIRAA-------EERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFML 1563
            KE   R+ E+R A       E++ L K    P+T +EFE  VR+ P++   WI YM  +L
Sbjct: 1553 KEWRLRDMEMRKAILAALTSEQQYLPKGQLHPQTTEEFELAVRNMPSNEACWIAYMTHLL 1612

Query: 1564 S------------MADVEKARSIAERALQTINIREENEKL----NIWVAYFNLENEYGNP 1607
            S               V +AR+IAER L+ I+    N  L    ++ ++Y  +E +    
Sbjct: 1613 SGKIGQQTNNSGLNKGVIEARAIAERGLRAISNSASNNLLVKQSSLLISYLIMEAK---- 1668

Query: 1608 PEEAVVKVFQRALQY-----------------CDPKKVHLALLGL-------YERTEQNK 1643
             E   +   Q+  QY                    K+V   L  L       + R   + 
Sbjct: 1669 -ELERLTCLQKQQQYHLSSSSISVSDLVMEINNQSKRVSQLLTQLLNLDQAPFIRRAIDT 1727

Query: 1644 LAD--------ELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1695
            L+D        EL  + IK        WL  ++   +          QR   SL +    
Sbjct: 1728 LSDIGHHTRAEELARRQIKSHPVDVDHWLSLIKARFRAGNVEAAREAQRNAASLLKS--- 1784

Query: 1696 KFISQTAI----LEFKNGVADRGRSMFEGILSEYPKRTDLW 1732
              + Q AI    +EF  G  DRG  + +  L+ +PKR  L+
Sbjct: 1785 SILPQLAIGVARIEFDYGDIDRGIRLLQEQLTIHPKRKLLY 1825


>gi|389612595|dbj|BAM19726.1| pre-rRNA processing protein rrp5, partial [Papilio xuthus]
          Length = 233

 Score =  152 bits (384), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/240 (33%), Positives = 145/240 (60%), Gaps = 13/240 (5%)

Query: 1559 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1618
            MAF L   ++EKAR +  RAL+TI+ REE EKLN+W+A  NLE+ +G   +E+  K  + 
Sbjct: 1    MAFHLQATEIEKARGVGRRALRTISFREEQEKLNVWLALLNLEHRFGT--KESQQKTLEE 58

Query: 1619 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR------RVQRLLK 1672
            ALQ  +  ++H  LL +Y  T +   A  L   M++K++   + ++       ++  L K
Sbjct: 59   ALQMNEKYQIHSKLLDIYVETGKASEAGALAELMLRKYRRQLQAYIDAGNACYQLGLLDK 118

Query: 1673 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1732
             +Q     ++Q+ L +L + +H+  + + A LE   G A+R  ++ E +++ YP+R D+ 
Sbjct: 119  ARQ-----IMQKGLTALEKREHVSLLVRFAQLERGCGEAERAGALLEHVVAAYPQRVDVT 173

Query: 1733 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1792
            S+Y+D  ++  D++ +R L ER  S  LP +KMK LFKK++E E+ +G +++++ +K++A
Sbjct: 174  SLYVDMLLKSNDIERVRQLMERMTSQKLPARKMKVLFKKWIEVEEKIGNQQQVDNIKKRA 233


>gi|302776682|ref|XP_002971492.1| hypothetical protein SELMODRAFT_412239 [Selaginella moellendorffii]
 gi|300160624|gb|EFJ27241.1| hypothetical protein SELMODRAFT_412239 [Selaginella moellendorffii]
          Length = 883

 Score =  149 bits (375), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 140/225 (62%), Gaps = 18/225 (8%)

Query: 1251 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1310
            +VKNV  KGCF++L+  L+A++ L NL + +V++P + FP GK++ GR+LS+EPLS  +E
Sbjct: 174  FVKNVMEKGCFVVLAPSLEARIQLKNLLNSFVQNPAEMFPPGKVILGRILSIEPLSGHIE 233

Query: 1311 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV------GLCH 1364
            ++L  + S+ +S            G+IV G+I  +E++G+FI++  +++        LCH
Sbjct: 234  MSLAATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGCLCH 288

Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1424
            VSE+S D + ++ T+Y+ G+  +VKILKVD E +RISLGMK+SY   + D +    E   
Sbjct: 289  VSEVSYDFIQDLSTLYKVGQWAQVKILKVDVETKRISLGMKASYLTPE-DGI----EPME 343

Query: 1425 DEAIEEVGSYNRSSLLENSSVAVQD-MDMESEDGGSLVLAQIESR 1468
            +EAI E  S N + L++N     +D +D+ S+    L +  + ++
Sbjct: 344  EEAINEEPS-NTNVLMDNDEREEEDYLDLASKRFPQLCINPLSTK 387


>gi|360043001|emb|CCD78412.1| putative programmed cell death protein 11 (pre-rRNA processing
           protein rrp5) [Schistosoma mansoni]
          Length = 1880

 Score =  149 bits (375), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 180/781 (23%), Positives = 326/781 (41%), Gaps = 103/781 (13%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDP---ILDNEIEAN--EDNL--LPTIFHVGQ 57
           GV+  V +  L + LP G  G     D  D    +L    E+   +D+L  L  +F VGQ
Sbjct: 9   GVIKSVQKLYLEVQLPHGFLGRVNIYDVSDKYTELLRESAESGIIQDDLVELSDMFKVGQ 68

Query: 58  LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 117
            V C + + D+ +     ++  +SL   ++ K +  + V+  MV    V S+EDHGYI+ 
Sbjct: 69  TVRCFIKEADNSRGSGSTKRYIVSLNPKMVNKAVISKNVKPHMVFVGSVVSVEDHGYIVD 128

Query: 118 FGLPSFTGFLPRN----NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 173
            G+     FLP++    NL   S I   P +    V  S   +++V+ +++  D+    +
Sbjct: 129 PGVARMNCFLPKDQVDVNLDIGSLIPFTPHVSDPLVNSS---SKRVLKVTTRLDSTLSVL 185

Query: 174 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 233
           + D + ++ D ++PG  +   +   + + ++  F  YF       ++ N       K DY
Sbjct: 186 SPDSR-VNFDCMLPGTCLHASIVKKVTSTLVAEFSEYFVSISRTHYIGN-------KEDY 237

Query: 234 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP--------SHVKVGDIYDQSKVVRV 285
               KV   I+ VDP+++ +  +L P+L+ N  P         S   VG  +  S V RV
Sbjct: 238 QIGAKVFVCIILVDPSTKQLTGSLLPHLV-NPIPSVLNISEMLSKCPVGTRFSGSLVERV 296

Query: 286 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
           ++   +L+ +P T     A + I     +      K    GS +  RI     LE +A  
Sbjct: 297 NKR-AVLVKLPKTN-GLKAVIRIPKTGTKNNENF-KSLVVGSKLTCRITDHDFLENVAVA 353

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
                       +  ++KPG  V   V      G +V   G +  L P  H ++  +   
Sbjct: 354 TTNKKLLSLPFLSLHELKPGNKVSATVKRYSKTGIVVHLEGRIHGLIPYLHTTDINLKDH 413

Query: 406 GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT-------DRLITH 456
            +KFK G ++   VL +   + ++ +T K  L+ ++L I  S+   +       ++L+  
Sbjct: 414 REKFKAGEKVSCLVLQLDECANKLILTAKPGLLNAELPIFGSHEMYSALKNGNNNQLLIV 473

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR- 515
           G+I K+ + G  +   + ++G+ PR E GL       + ++ GQV+K +    I  S   
Sbjct: 474 GFIVKVSEKGLLISGLDNIRGWIPRRETGLADEDILQTNFYRGQVLKMKFKREINISSEN 533

Query: 516 --------------INLSFMMKPTRVSED---DLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
                         ++L F  K T+  +    + V++G L    V+ V    + + +  K
Sbjct: 534 EVEKDSRNIRSKYMLSLKFHSKKTKNMQSIFLNSVQIGQLFRATVNQVQDTGISLNLYDK 593

Query: 559 GYSKGTIPT--------EHLADHLEHATVMKSV---IKPGYEFD------QLLVLDNESS 601
             +    P           L+D+  +  ++      IKPG   D       ++V+D    
Sbjct: 594 NINDTVTPVLGTGFLSFSQLSDYESNQQLLSRYIKNIKPGSTLDWNHSARNVVVIDKGKQ 653

Query: 602 NLLLSAKYSLINSAQQLP-----------SDASHIHP-----------NSVVHGYVCNII 639
            ++LSA+ +L+ +A  L            S+AS   P            S    +V +  
Sbjct: 654 TVILSARPTLVQAASDLKTNINIDVDMVDSEASDKRPGFLRTFDELQVGSQWFAWVSHHK 713

Query: 640 ETGCFVRFLGRLTGFAPRSKAVDGQ---RADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
           + G FV F   + G AP+    D +     + ++ + VG +V + I++V  E     +SL
Sbjct: 714 DYGVFVHFPAGIYGLAPKHLLSDFRTQSNTNWTELFPVGATVITKIVEVTPEKCHCLISL 773

Query: 697 K 697
           K
Sbjct: 774 K 774



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 24/121 (19%)

Query: 1490 SQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAA-------EERLLEKDA--PRTPDE 1540
            S N  H D  +   E  +     KE   RE E+R A       E++ L K    P+T +E
Sbjct: 1545 SNNDEHLDIER---EDKSESQAAKEWRLREMEMRKAMLAELTTEQQCLPKGQLHPQTTEE 1601

Query: 1541 FERLVRSSPNSSFVWIKYMAFMLS------------MADVEKARSIAERALQTINIREEN 1588
            FE  VR+ P++ F WI YM  +LS               V  AR+I ER L+ I+    N
Sbjct: 1602 FELAVRNMPSNEFCWIAYMTHILSNKVDHQSVSSSLNKGVIDARAIVERGLRAISNSTSN 1661

Query: 1589 E 1589
            +
Sbjct: 1662 Q 1662


>gi|221508178|gb|EEE33765.1| programmed cell death protein, putative [Toxoplasma gondii VEG]
          Length = 395

 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 114/181 (62%), Gaps = 6/181 (3%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            PR+P++FERLV  + NS+ VWI YMA+ L + +++ AR IAERA+Q IN REE E+ ++W
Sbjct: 219  PRSPEDFERLVLVNGNSAAVWISYMAYYLKLNELQLARQIAERAVQHINYREEQERSSVW 278

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
            +AY NLE  YG+     V  VF+RA+QY D KK+H  +  +YE+  Q   A ++  K  +
Sbjct: 279  IAYLNLECVYGD----RVDDVFRRAIQYNDSKKIHYQMTFIYEKARQLDKARQMCEKCCE 334

Query: 1655 KFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712
            KF  S K+W+R +  L          + ++ +AL  LPR KHI+F++  A LE+K+   +
Sbjct: 335  KFPESQKMWVRHLTLLYTALDAASAARDLMLQALFRLPRRKHIEFVATCARLEYKHASKE 394

Query: 1713 R 1713
            R
Sbjct: 395  R 395


>gi|118374077|ref|XP_001020230.1| S1 RNA binding domain containing protein [Tetrahymena thermophila]
 gi|89301997|gb|EAR99985.1| S1 RNA binding domain containing protein [Tetrahymena thermophila
            SB210]
          Length = 2060

 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 313/1448 (21%), Positives = 578/1448 (39%), Gaps = 236/1448 (16%)

Query: 80   LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF-GLPSFTGFLPRNNLAENSGI 138
            +S++ S +  GL +  +   M+L   V S EDHG  + F G   + GFL ++    N+  
Sbjct: 221  VSIKTSKVNSGLQISDIHLNMILPGLVSSKEDHGAKIEFNGGEKYFGFLSKD--EANNFE 278

Query: 139  DVKPGLLLQGVVRSIDRTRKVVYLSSD-PDTVSKCVTK---DLK-GISIDLLV-PGMMVS 192
            D++ G +    V   +  +++V+LS    D   K V     D++ G  +  L  PG +V+
Sbjct: 279  DLEEGRVYMFRVIKKEEKKRLVHLSQKVSDQEGKFVVSGEVDIEDGADLHHLAKPGNLVN 338

Query: 193  TRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA 252
              +  +L NG+++ FL  F G +   HL            Y + +K+ ARI+  D   + 
Sbjct: 339  AVILKVLNNGLIVRFLKQFIGFIFEDHLDKEISA------YKEKEKLLARIIASDFDQKQ 392

Query: 253  VGLT-------LNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 305
            + L+       L PY        + +  GD+     VV      G     P+      ++
Sbjct: 393  INLSVKKAHIDLKPY------EDNSIVTGDVLTDGFVVTKALYGGSYFVKPNNSNIQQSF 446

Query: 306  VTISDVAEEEVRKLEKKYKEGSCVR--VRILGFRHLEGLATGILKASAFEGLVFTHSDVK 363
            +  + + +EE+       KEG      ++I    + E +     K    +  V   +D++
Sbjct: 447  LHKAHIEKEEL-------KEGQTYTDAIKIKEINYFEQIPIITAKGELVK-RVTNWNDLR 498

Query: 364  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF----EIVKPG---KKFKVGAELV 416
            PGM +  K+  +   GA  Q+   V     +  + +F    +I K G   K  K G ++ 
Sbjct: 499  PGMQLSAKIDKIIQ-GANNQYKLKVAVNDKMIGLVDFYNTADIPKAGPVPKNLKEGRKIK 557

Query: 417  FRVLGVK--SKRITVTHKKTLVK---SKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 471
             R++ V    K +  T K  L+     K+    S A+  D  +  G+I++  ++G  V+F
Sbjct: 558  VRIMSVNPSDKTLRFTIKPALLNEEDDKILKNISNAQVGDSYL--GFISRKTEYGYIVQF 615

Query: 472  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF------MMKPT 525
            +  V G     ++    G      Y VGQV++  I        +I LS        ++  
Sbjct: 616  FGDVIGLLTFKDIEEING-HSRDEYKVGQVIRVYIAFVNAEQGKIGLSISEKGVSQLQKQ 674

Query: 526  RVSED--------------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK---GTIPTE 568
            ++S++              ++  +   V  V++ +  N   +  +   Y K     I  E
Sbjct: 675  KLSQNTSRKTLFEFQAINENVENISHNVGDVLEYIVENNQALQDVLTLYHKEHRAIIAIE 734

Query: 569  HLADHLEHATVMKSVIKPGYEFDQLLVLDNE------SSNLLLSAKYSLINSAQQLPSDA 622
            HL+D   H   +    +        + +  +      + N+++SAK S++++    P+  
Sbjct: 735  HLSDFRNHYQSLNQYYRTLPNKGNQVTIKCKIIHIMPNKNVIVSAKPSILSNMN--PNSL 792

Query: 623  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
              +  N++   Y+      G  V+F  R+  F      +  +  D    +    SV   +
Sbjct: 793  ESVKANNIYTAYIDRGARKGVLVKFNERVKFF------IGKENLDEHAAFQTYDSVL--V 844

Query: 683  LDVNSETGRITLSL-------KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
               N E  +IT SL       KQ+  +S    F+ E+F  E    ML      G   K  
Sbjct: 845  FVKNVEGDKITASLQNEAVFKKQAHINSQFNRFI-EYFNDE---YMLNKKFTQGEHKKTW 900

Query: 736  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG--ATVESGSVIQAAILDV 793
              + +G+ +   +    +FG+VV   + S + G I +  +A   +T+  G  +   I D+
Sbjct: 901  NKYRVGNYVNTTIELVKEFGIVVKVND-SPLTGLIMNEHVANTRSTLAEGQTLLCRITDI 959

Query: 794  AKAERLVDL---------SLKTVF------IDRFREANSNRQAQKKKRKREASKDLGVHQ 838
               +++VD+          L T+       +D+F E  +N                   +
Sbjct: 960  DFEKQMVDVIPSPIDDNTKLTTLLQSNNFNLDKFLELENN-------------------E 1000

Query: 839  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT---------QKFPQKQFLNGQSVIA 889
            T++A V   K  Y++  + +      Y +++++N          QK    + +N + +  
Sbjct: 1001 TIDATVICQKGEYIICQITKAPKVFCYVNMTNFNNLEHEEMLFGQKIKNLKCVNKEILQK 1060

Query: 890  TVMALPSSSTAGR---LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELR 946
            T     S++ A R   + L  + +++    ++   K   +   G  V  ++ +     + 
Sbjct: 1061 THKNAQSTNMALRSNYIPLFEQQVNQQNKGTAIEEKSGITLKPGIKVVGKVLKTVGFNVF 1120

Query: 947  LKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSI 1006
            ++     +G++H ++  D +       F++FK GQ +  +I+    K D  KS   +L+ 
Sbjct: 1121 VQLKGKLYGKLHKSQCQDAEQ------FASFKEGQQIDCKILYL--KKD--KSLQIDLTT 1170

Query: 1007 K-----PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE-----WALLTISRHLKAQ 1056
            K      ++L  SE+ S  +    +  +GQ   G V   D       +  L+   H    
Sbjct: 1171 KQAHMNSTLLEESEVLSMSIDNFRENCVGQIHRGVVKSTDPSSIHPVYIELSNYHHGYFS 1230

Query: 1057 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN--KEKKLLRLVLRPFQDGISDKTVDI 1114
             F LD+     +L + ++++  G  V   ++S++  KE  L  + L P        + D 
Sbjct: 1231 AFDLDA----EDLNQIKKKYKKGSIVECRIVSLSSSKENDLKHIQLSP-----KLLSADE 1281

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            S +   + I  GD+V  +I K      G  VQI  +L+G V  TE   IC        DE
Sbjct: 1282 SAEKKDS-IKVGDLVTAKIVK--KNNNGFRVQISDNLFGNVDITE---IC--------DE 1327

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM-----------SSTNSS 1223
               +  S      FVK +V+          H  LSLRSS+              ++ N  
Sbjct: 1328 WIANASSSIQINSFVKARVI-----AEEGDHKYLSLRSSVTNEQNWKNSLGPNGTTINYK 1382

Query: 1224 DLSTDVDTPGKHLEKIEDLSPN-----MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1278
               +D +  G    +I  L P      M+  GY+     KGCFI + +    +  L+ LS
Sbjct: 1383 KYFSDSEKIGDLRNRIIKLGPGSIKVGMVFVGYINQTNDKGCFIKIGQDTVVRASLNELS 1442

Query: 1279 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV 1338
            D ++  P+  F   KLV GR++ ++   K +E +L+ S  +     +    S L VG  V
Sbjct: 1443 DEHIAKPQTHFYQNKLVVGRIIQIKEDGK-IEASLRESVIKYGYSMDD---SKLQVGATV 1498

Query: 1339 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD--------NIETIYRAGEKVKVKI 1390
             G +      G +    + ++ G    + L +D  D         +E +   G  VK K+
Sbjct: 1499 YGTV-----VGHYQGRASVSIRGCKFRASLDKDDTDFTDEEKMGYVEKLLPIGSAVKAKV 1553

Query: 1391 LKVDKEKR 1398
            +K +KE +
Sbjct: 1554 IKYEKEPK 1561


>gi|323453800|gb|EGB09671.1| hypothetical protein AURANDRAFT_5211, partial [Aureococcus
            anophagefferens]
          Length = 277

 Score =  147 bits (371), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 87/276 (31%), Positives = 148/276 (53%), Gaps = 12/276 (4%)

Query: 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1594
            PRT +++ERL+ +  N++  WI Y   +++ +D   AR + ERAL+ I  REE ++L  W
Sbjct: 1    PRTAEDYERLLVTEWNAAATWIAYAKLLVTESDATGARGVLERALKKIGYREEAQRLEAW 60

Query: 1595 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654
             A    E ++G+   +++     RA +  DP +V L L  L+E T     AD    +  K
Sbjct: 61   AALLAHERDHGDA--KSLSAAVDRATKNADPTRVLLKLAALHEETSNYDAADAAYARAEK 118

Query: 1655 KFKHSC----KVWLRRVQ-RLLKQQQEGVQAVVQRALLSL----PRHKHIKFISQTAILE 1705
            + +        VWL   + RLL    +  +AV+ RA+ +     P+ +    +++ A LE
Sbjct: 119  RSRRQGATPDDVWLAHCRSRLLAGAADDARAVLDRAVQACADGGPKAE-ASLLAKFACLE 177

Query: 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765
               G ADRGR++F+  L+++PKR DLW +Y+ + ++ GDV   R +  R   ++LPPK M
Sbjct: 178  LDVGSADRGRTLFDTTLAKWPKRADLWQLYVAKSLKAGDVAHARAIQMRLAGVNLPPKAM 237

Query: 1766 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801
            +   K++  +E++ G+    + VK  A  YV+   A
Sbjct: 238  RAALKRFAAFEEAHGDAASADAVKDLARAYVQKQQA 273


>gi|355709767|gb|AES03702.1| programmed cell death 11 [Mustela putorius furo]
          Length = 398

 Score =  146 bits (369), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 148/292 (50%), Gaps = 21/292 (7%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
           M++ G V EVNE +LVI LP GLRG  +  +  D      NE  A E+ +     LP +F
Sbjct: 87  MRILGCVKEVNELELVISLPNGLRGFVQVTEICDAYTKKLNEQVAQEEPVKDLVGLPELF 146

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
             G LV C+V  +   ++  GK+ + LSL    + + LS E ++ GM+LT  V S+EDHG
Sbjct: 147 SPGMLVRCVVSSVGITER--GKKSVKLSLNPRNVNEVLSAEALKPGMLLTGTVSSLEDHG 204

Query: 114 YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
           Y++  G+     FLP     E     N G  +K G  L  ++  +     VV LS     
Sbjct: 205 YVVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLHCIIEEVKGNGGVVGLSIGHSE 264

Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
           VS  +  + +  +++ L+PG++V  +VQ +   G+ L+FL++FTG VD  HL      T 
Sbjct: 265 VSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLSFFTGLVDFMHLDPKKAGTY 324

Query: 229 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAPPSHVKVGDIYD 278
           + N     + V A +L V P +RAV L+L P  L      P S   +G + D
Sbjct: 325 FSN-----QAVRACVLCVHPRTRAVRLSLRPVFLQPGRSLPRSCQHLGAVLD 371


>gi|387192690|gb|AFJ68666.1| rrna biogenesis protein rrp5, partial [Nannochloropsis gaditana
           CCMP526]
          Length = 578

 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 173/358 (48%), Gaps = 34/358 (9%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-----------LDNEIEANED--NLL 49
           + GVV  V  KD+ + LPGGL G     +  DP            + + +   ED    +
Sbjct: 150 VLGVVIRVGPKDVSVALPGGLSGRVPLVEVSDPFFSRFSPSVNGTISDPVSEKEDLIKAV 209

Query: 50  PTIFHVGQLVSCIVLQLDDDKKE----------IGKRKIWLSLRLSLLYKGLSLETVQEG 99
            T    GQ+V  +V   +   ++             +K+ L+LR S + +GL LE V  G
Sbjct: 210 STFLRPGQVVRAVVSSSNAASRKQSAGGAGSGGRASQKVPLTLRASAVNRGLKLEHVLPG 269

Query: 100 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL----LQGVVRSIDR 155
             L   V S+EDHGY++  GL   T FL R ++    G +V+  L+    ++ VV  +  
Sbjct: 270 GALMGAVASVEDHGYVVSTGLEGVTAFLARKHV--KGGAEVEKALVKGSPVEIVVLDVKE 327

Query: 156 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 215
             + +    DP  + + +T+    +++  L PGM+V+  + +IL+NG+ L+FL   +G V
Sbjct: 328 ASRAITCGFDPAVLPRALTRG-SALTLAGLKPGMLVNAAIDAILKNGLALTFLGGLSGVV 386

Query: 216 DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGD 275
            + HL   +   +W+  Y     +  R+L VD  S++V LTL  +LL  RAP    ++G 
Sbjct: 387 SLEHLDRPYAENDWRKRYRLGDILQVRVLMVDVKSKSVYLTLRAHLLGMRAPSGLPELGQ 446

Query: 276 IYDQSKVVRVDRGLGLLLD-IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 332
           +  ++KV+RVD   GL+L  +P  P S        D  E+E R +E++       RVR
Sbjct: 447 VLSEAKVLRVDPTKGLVLGFLP--PESVNGGTKDIDTCEDEGR-IEEELSGRRAKRVR 501


>gi|302779838|ref|XP_002971694.1| hypothetical protein SELMODRAFT_412227 [Selaginella moellendorffii]
 gi|300160826|gb|EFJ27443.1| hypothetical protein SELMODRAFT_412227 [Selaginella moellendorffii]
          Length = 429

 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 218/492 (44%), Gaps = 127/492 (25%)

Query: 1074 RRFHIGKAVTGHVLSINKEKK------LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
            R++ +G+ V   +LS  K  +      +L L LRP +   +D    +     +T I E  
Sbjct: 54   RKYSVGQTVRAKILSKRKTSRKHRNAGILDLSLRPSELAGNDAACSVIT--FETVIIEQS 111

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP--LSGYDEGQFDPLSGYDE 1185
            ++   + ++      LV  + PHL G +   +  +    DP  L  + E        +  
Sbjct: 112  VIR-YVQEVKDNWAWLV--LSPHLKGCLFILDTSD----DPSELERFKER-------FKV 157

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            G   +C +  ++   +    V+LSL           S +     D  G+ + +       
Sbjct: 158  GDPFQCHIRSVNHERK---QVDLSLHPK-------TSDEQFKKGDLLGRRMTRFFAGRGK 207

Query: 1246 MIVQ--GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            M ++  G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+E
Sbjct: 208  MGLELSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIE 267

Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
            PLS  +E++L  + S+ +S            G+IV                        C
Sbjct: 268  PLSGHIEMSLTATTSQDSS-----GWKKFGAGEIV---------------------SCFC 301

Query: 1364 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1423
            HVSE+S D + ++ T+Y+ G+ V+VKILKVD E +RISLGMK+SY               
Sbjct: 302  HVSEVSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKASY--------------- 346

Query: 1424 SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP 1483
                                        +  EDG             + P+E    +E+P
Sbjct: 347  ----------------------------LTPEDG-------------IEPMEEEAINEEP 365

Query: 1484 DMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFE 1542
               N +  N    +E   +D  + R  +   +        AA+E+LL+ D  P T D+FE
Sbjct: 366  SNTN-VLMNNDEREEEDYLDLASKRFPQLCMEA-------AAKEKLLQMDQPPETKDDFE 417

Query: 1543 RLVRSSPNSSFV 1554
            RLV +SPNSS++
Sbjct: 418  RLVAASPNSSYM 429



 Score =  108 bits (270), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 118/240 (49%), Gaps = 40/240 (16%)

Query: 971  ENLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1029
            EN    + +GQTV A+I++K       + + + +LS++PS L  ++    ++  E  V I
Sbjct: 50   ENPLRKYSVGQTVRAKILSKRKTSRKHRNAGILDLSLRPSELAGNDAACSVITFE-TVII 108

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
             Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+
Sbjct: 109  EQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSV 168

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG-------- 1141
            N E+K + L L P       KT D      + F  +GD++G R+++  +G G        
Sbjct: 169  NHERKQVDLSLHP-------KTSD------EQF-KKGDLLGRRMTRFFAGRGKMGLELSG 214

Query: 1142 --------GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FDPLSGYDE 1185
                    G  V + P L  R+    L N  V +P   +  G+         +PLSG+ E
Sbjct: 215  FVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSGHIE 274


>gi|342321045|gb|EGU12983.1| U3 snoRNP-associated protein Rrp5 [Rhodotorula glutinis ATCC 204091]
          Length = 1507

 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 173/329 (52%), Gaps = 24/329 (7%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPH---LYGRVHFTELKNICVSDPLSGYDE-GQFDPLS 1181
            G +  GR++  LS    LV  +G     L GRV  TEL     SD  S   E G+    +
Sbjct: 854  GALYPGRVTSSLSSGVVLVQLVGSRNASLRGRVALTEL-----SDDYSLVSEKGE----A 904

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
             +  G  V+  VL      R    ++LSLR+S   +S+ +    S   D P   +  ++D
Sbjct: 905  LFPVGTNVQAVVLAKDDEQR---RLDLSLRAS-RVLSAQDKPLASPPADAP---VTSVDD 957

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L P   V+G+VKNV + G F+ L R + A+VL+  L D YV+  +  F +G+LV G++LS
Sbjct: 958  LKPGSKVRGFVKNVANAGVFVELGRDITARVLIKELFDEYVKEWKPRFKVGELVEGKILS 1017

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLS----NLHVGDIVIGQIKRVESYGLFITIENT 1357
            V+ +S ++E++ ++S       S   ++S    NL  G +V G IKRV++YG+FI ++ +
Sbjct: 1018 VDKVSSQIEMSFRSSAVVKKDASAPTSVSLADANLSRGQVVRGTIKRVQNYGVFIRLDES 1077

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
             + GLCH S++ +D   + + + R G+KVK  +L VD EK+++SLG+K+   +      Q
Sbjct: 1078 GVEGLCHKSKIVDDEKRSWKEVVREGQKVKAVVLSVDLEKKKLSLGLKNVDLQAMLAQAQ 1137

Query: 1418 MSSEEESDEAIEEVGSYNRSSLLENSSVA 1446
                +E DE  E       +S L  +  A
Sbjct: 1138 AGGSDEDDEMSEAEAPVASTSKLPATKAA 1166



 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 145/584 (24%), Positives = 260/584 (44%), Gaps = 45/584 (7%)

Query: 49  LPTIFHVGQLVSCIVLQL-------------DDDKKEIGKRKIWLSLRLSLLYKGLSLET 95
           LP +FH GQ +  +V                + D+     R++ LS+    + +G++   
Sbjct: 235 LPALFHTGQYLIAVVTSTAVSDPTKPKLAGREGDETVRSSRRVELSVEPEKVNEGIAKGD 294

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 155
           ++ G VL A V  +E+ GY L FGLP  + FLP  +  + +   +  G ++   +  I  
Sbjct: 295 LKRGFVLPAAVHDVEEKGYTLSFGLPPLSAFLPFADAKKLAPKGLHVGQVVVCRLTKIHS 354

Query: 156 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 215
             + V ++ +   ++      +   SI  L+P  +V   V +++  G+ + F  Y+ GT+
Sbjct: 355 NERTVSVAVEWADIASTTLDSVS--SITSLLPLQIVPALVTAVMPQGLNVKFHGYYDGTI 412

Query: 216 DIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYLLHNRAPPSHVK- 272
           D FHL  +    +    Y + +KV  RIL+  +  T +   L++   ++  R   S VK 
Sbjct: 413 DRFHLPIS-AGEDIAQHYKEGQKVKGRILWDSISQTPKKFALSMREEVV--RLDESRVKA 469

Query: 273 ------VGDIYDQSKVVRVDRGLGLLLDI-PSTPVSTPAYVTISDVAEEEVRKLEKK--Y 323
                 VG    Q+K+V VD   GL  +I    PVS  A+V IS + ++ +  + K   +
Sbjct: 470 LQSEWVVGRKC-QAKIVAVDEEWGLTCEIVGDEPVS--AFVHISRITDDHLSTIPKAGPW 526

Query: 324 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 383
           + G+    R++    L+ L    L+ S          DV+ G  VKG V  +      V 
Sbjct: 527 QIGTVHPARVVSLSPLDSLVQLSLQPSILSQSFLRVQDVRVGEEVKGTVKVLRDNALFVS 586

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLA 441
             G V  +    H ++  +  P KKFK G  +  RV  V  +  R+ +T KK L+++   
Sbjct: 587 IGGSVDGVVWPLHYADIRLKHPEKKFKPGQAVKARVFSVDPEKNRVVLTLKKQLLQTPHP 646

Query: 442 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL--GLDPGCEPSSMYHVG 499
           ++++ +EA   L+T   +TK+      V F+ GV+   P +E         +   M+ +G
Sbjct: 647 LVTTLSEAKPGLVTDATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVADLGRMFPLG 706

Query: 500 QVVKCRIMSSIPASRRINLSFMMKPTRVSED------DLVKLGSLVSGVVDVVTPNAVVV 553
           +VV  RI+S   AS RI  S        +        + + +G+L +G +  +    +V+
Sbjct: 707 KVVAVRILSVDRASGRIVASARQASAPAASTSSSSAIESIDVGTLTTGTISALHETNLVL 766

Query: 554 YVIAKGYSKGTIPTEHLADHLE-HATVMKSVIKPGYEFDQLLVL 596
             +A+G  K  +    LA H       +K  +  G + + L+V+
Sbjct: 767 S-LAEGGIKALLAYPTLARHRGVSVETLKGDLAKGQKLEDLVVV 809



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 182/831 (21%), Positives = 334/831 (40%), Gaps = 98/831 (11%)

Query: 43   ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 102
            A+   L P   HVGQ+V C + ++  +++ +     W  +  + L    S+ ++    ++
Sbjct: 329  ADAKKLAPKGLHVGQVVVCRLTKIHSNERTVSVAVEWADIASTTLDSVSSITSLLPLQIV 388

Query: 103  TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV----KPGLLLQGVV--RSIDRT 156
             A V ++   G  + F    + G + R +L  ++G D+    K G  ++G +   SI +T
Sbjct: 389  PALVTAVMPQGLNVKFH-GYYDGTIDRFHLPISAGEDIAQHYKEGQKVKGRILWDSISQT 447

Query: 157  RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFL--TYFTG 213
             K   LS   + V +     +K +  + +V G     ++ ++ E  G+    +     + 
Sbjct: 448  PKKFALSMREEVV-RLDESRVKALQSEWVV-GRKCQAKIVAVDEEWGLTCEIVGDEPVSA 505

Query: 214  TVDIFHLQNTFPTTNWKNDYNQHKKVN-ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 272
             V I  + +   +T  K    Q   V+ AR++ + P    V L+L P +L      S ++
Sbjct: 506  FVHISRITDDHLSTIPKAGPWQIGTVHPARVVSLSPLDSLVQLSLQPSILSQ----SFLR 561

Query: 273  VGDIYDQSKV---VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 329
            V D+    +V   V+V R   L + I     S    V     A+  ++  EKK+K G  V
Sbjct: 562  VQDVRVGEEVKGTVKVLRDNALFVSIGG---SVDGVVWPLHYADIRLKHPEKKFKPGQAV 618

Query: 330  RVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG 386
            + R+      +      LK    +    LV T S+ KPG+V    V  V     +V F G
Sbjct: 619  KARVFSVDPEKNRVVLTLKKQLLQTPHPLVTTLSEAKPGLVTDATVTKVLDKSVLVDFFG 678

Query: 387  GVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
            GV+AL P    +E   ++   G+ F +G  +  R+L V   S RI  + ++    +    
Sbjct: 679  GVRALVPAAEAAEAFTDVADLGRMFPLGKVVAVRILSVDRASGRIVASARQASAPAASTS 738

Query: 443  LSSYAEATD-RLITHGWITKIEKHGCFVRFY-NGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
             SS  E+ D   +T G I+ + +    +     G++       L    G    ++   G 
Sbjct: 739  SSSAIESIDVGTLTTGTISALHETNLVLSLAEGGIKALLAYPTLARHRGVSVETLK--GD 796

Query: 501  VVKCRIMSS-IPASRRINLSFM---MKPTRVSED------------------DLVKLGSL 538
            + K + +   +  S+ ++  F+   + P++ +                    D +++G+L
Sbjct: 797  LAKGQKLEDLVVVSKNVDKGFVIVGLVPSKSAAATAAASSSAASTSQPQLTFDRLEVGAL 856

Query: 539  VSG-VVDVVTPNAVVVYVIAKGYS--KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 595
              G V   ++   V+V ++    +  +G +    L+D     +     + P     Q +V
Sbjct: 857  YPGRVTSSLSSGVVLVQLVGSRNASLRGRVALTELSDDYSLVSEKGEALFPVGTNVQAVV 916

Query: 596  L--DNESSNLLLSAKYSLINSAQ-----QLPSDA-----SHIHPNSVVHGYVCNIIETGC 643
            L  D+E   L LS + S + SAQ       P+DA       + P S V G+V N+   G 
Sbjct: 917  LAKDDEQRRLDLSLRASRVLSAQDKPLASPPADAPVTSVDDLKPGSKVRGFVKNVANAGV 976

Query: 644  FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
            FV     +T      +  D    +    + VG+ V   IL V+  + +I +S + S    
Sbjct: 977  FVELGRDITARVLIKELFDEYVKEWKPRFKVGELVEGKILSVDKVSSQIEMSFRSSAVVK 1036

Query: 704  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
             DAS      L +  ++                    G V+ G +    ++GV +  +E 
Sbjct: 1037 KDASAPTSVSLADANLSR-------------------GQVVRGTIKRVQNYGVFIRLDE- 1076

Query: 764  SDVYGFITHHQLAG-------ATVESGSVIQAAILDVAKAERLVDLSLKTV 807
            S V G     ++           V  G  ++A +L V   ++ + L LK V
Sbjct: 1077 SGVEGLCHKSKIVDDEKRSWKEVVREGQKVKAVVLSVDLEKKKLSLGLKNV 1127



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 187/456 (41%), Gaps = 57/456 (12%)

Query: 932  LVQAEITEIKPLELRLKFGIGFHG---RIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
            +V A +T + P  L +KF   + G   R H+        +  E++  ++K GQ V  RI+
Sbjct: 387  IVPALVTAVMPQGLNVKFHGYYDGTIDRFHLP------ISAGEDIAQHYKEGQKVKGRIL 440

Query: 989  AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1048
              S     KK   + LS++  ++ + E   K L  E    +G++    +  VD EW L  
Sbjct: 441  WDSISQTPKK---FALSMREEVVRLDESRVKALQSEW--VVGRKCQAKIVAVDEEWGLTC 495

Query: 1049 -ISRHLKAQLFILDSAYEPSELQEFQRR--FHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1105
             I        F+  S      L    +   + IG      V+S++    L++L L+P   
Sbjct: 496  EIVGDEPVSAFVHISRITDDHLSTIPKAGPWQIGTVHPARVVSLSPLDSLVQLSLQP--S 553

Query: 1106 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1165
             +S   + + +      +  G+ V G + K+L     L V IG  + G V      +I +
Sbjct: 554  ILSQSFLRVQD------VRVGEEVKGTV-KVLRD-NALFVSIGGSVDGVVWPLHYADIRL 605

Query: 1166 SDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1225
              P     E +F P      GQ VK +V  +         V L+L+  L           
Sbjct: 606  KHP-----EKKFKP------GQAVKARVFSVDPEKN---RVVLTLKKQL----------- 640

Query: 1226 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1285
               + TP   +  + +  P ++    V  V  K   +     + A V  +  ++ + +  
Sbjct: 641  ---LQTPHPLVTTLSEAKPGLVTDATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVA 697

Query: 1286 E--KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1343
            +  + FP+GK+VA R+LSV+  S R+  + + + +  AS S  + + ++ VG +  G I 
Sbjct: 698  DLGRMFPLGKVVAVRILSVDRASGRIVASARQASAPAASTSSSSAIESIDVGTLTTGTIS 757

Query: 1344 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
             +    L +++    +  L     L+     ++ET+
Sbjct: 758  ALHETNLVLSLAEGGIKALLAYPTLARHRGVSVETL 793



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 18/193 (9%)

Query: 953  FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP-----DMKKSFLWELSIK 1007
              GR+ +TE++DD S V E   + F +G  V A ++AK ++       ++ S +     K
Sbjct: 882  LRGRVALTELSDDYSLVSEKGEALFPVGTNVQAVVLAKDDEQRRLDLSLRASRVLSAQDK 941

Query: 1008 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
            P     S      +    D+  G +V G+V  V N    + + R + A++ I +   E  
Sbjct: 942  P---LASPPADAPVTSVDDLKPGSKVRGFVKNVANAGVFVELGRDITARVLIKELFDE-- 996

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF----QDGISDKTVDISNDNMQTFI 1123
             ++E++ RF +G+ V G +LS++K    + +  R      +D  +  +V +++ N+    
Sbjct: 997  YVKEWKPRFKVGELVEGKILSVDKVSSQIEMSFRSSAVVKKDASAPTSVSLADANLS--- 1053

Query: 1124 HEGDIVGGRISKI 1136
              G +V G I ++
Sbjct: 1054 -RGQVVRGTIKRV 1065



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            +++D+     V+G VK +     F+ +   +D  V   + +D  ++ PEK+F  G+ V  
Sbjct: 561  RVQDVRVGEEVKGTVKVLRDNALFVSIGGSVDGVVWPLHYADIRLKHPEKKFKPGQAVKA 620

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            RV SV+P   RV +TLK    +T     +  LS    G +    + +V    + +     
Sbjct: 621  RVFSVDPEKNRVVLTLKKQLLQT-PHPLVTTLSEAKPGLVTDATVTKVLDKSVLVDFFG- 678

Query: 1358 NLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRI 1400
             +  L   +E +E   D  ++  ++  G+ V V+IL VD+   RI
Sbjct: 679  GVRALVPAAEAAEAFTDVADLGRMFPLGKVVAVRILSVDRASGRI 723



 Score = 48.1 bits (113), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 95/459 (20%), Positives = 184/459 (40%), Gaps = 66/459 (14%)

Query: 5    GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 64
              V +V +K +++   GG+R L  AA+A +   D          L  +F +G++V+  +L
Sbjct: 662  ATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVAD-------LGRMFPLGKVVAVRIL 714

Query: 65   QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 124
             +D     I       S   +      ++E++  G + T  + ++ +   +L        
Sbjct: 715  SVDRASGRIVASARQASAPAASTSSSSAIESIDVGTLTTGTISALHETNLVLSLAEGGIK 774

Query: 125  GFLPRNNLAENSGIDVKP--GLLLQG--------VVRSIDRTRKVVYLSSDPDTVSKCVT 174
              L    LA + G+ V+   G L +G        V +++D+   +V L       +    
Sbjct: 775  ALLAYPTLARHRGVSVETLKGDLAKGQKLEDLVVVSKNVDKGFVIVGLVPSKSAAATAAA 834

Query: 175  KDLKG------ISIDLLVPGMMVSTRVQSILENGVMLSFL-----TYFTGTVDIFHLQNT 223
                       ++ D L  G +   RV S L +GV+L  L         G V +  L + 
Sbjct: 835  SSSAASTSQPQLTFDRLEVGALYPGRVTSSLSSGVVLVQLVGSRNASLRGRVALTELSDD 894

Query: 224  FPTTNWKND--YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR------APPSHVKVGD 275
            +   + K +  +     V A +L  D   R + L+L    + +       +PP+   V  
Sbjct: 895  YSLVSEKGEALFPVGTNVQAVVLAKDDEQRRLDLSLRASRVLSAQDKPLASPPADAPVTS 954

Query: 276  IYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVAEEEVRKLEKKYKEGSCV 329
            + D     +V    G + ++ +  V         A V I ++ +E V++ + ++K G  V
Sbjct: 955  VDDLKPGSKVR---GFVKNVANAGVFVELGRDITARVLIKELFDEYVKEWKPRFKVGELV 1011

Query: 330  RVRILGFRHLEG------LATGILK--ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 381
              +IL    +         ++ ++K  ASA   +    +++  G VV+G +  V ++G  
Sbjct: 1012 EGKILSVDKVSSQIEMSFRSSAVVKKDASAPTSVSLADANLSRGQVVRGTIKRVQNYGVF 1071

Query: 382  VQF-PGGVKALCPLPHMSEF---------EIVKPGKKFK 410
            ++    GV+ LC   H S+          E+V+ G+K K
Sbjct: 1072 IRLDESGVEGLC---HKSKIVDDEKRSWKEVVREGQKVK 1107


>gi|313232837|emb|CBY09520.1| unnamed protein product [Oikopleura dioica]
          Length = 734

 Score =  140 bits (354), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 161/305 (52%), Gaps = 15/305 (4%)

Query: 1499 AKTIDEKNNRHAKKKEKE----------EREQEIRAAEERLLEKDAPRTPDEFERLVRSS 1548
            AK ++ ++ +  K KE E          E E + R AE  + +   P     +ER V ++
Sbjct: 416  AKEVERRSKKPQKTKEPEADSGKTLSLEEIEDKAREAEREMEKSKLPEDVSGWERAVITA 475

Query: 1549 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1608
            PN+S +W++Y AF ++  ++EK+R + +RAL+TI+ REE+++LNIW A  NLE  YG+  
Sbjct: 476  PNNSEIWLRYSAFHIASGEIEKSRMVMDRALKTIHFREEDDRLNIWKARLNLEALYGD-- 533

Query: 1609 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW--LRR 1666
            +E++   F  A +  D +KV+ A++G+   + +   A  +L   +KK+    ++W  L R
Sbjct: 534  KESLQSQFNEAKKCNDERKVYHAVIGIQLDSNKYSSAIPILRDAVKKYPEDIELWSKLGR 593

Query: 1667 VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1726
             Q +     E     +QRAL +     H+    + A L+F+ G  + G+++ E +L  + 
Sbjct: 594  CQ-IEDGSPEKATVTLQRALQANKAKTHVMITQKFAKLQFEFGDLENGKTILEQMLKVHA 652

Query: 1727 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1786
            KR D+W +Y D  ++ GD +  R +  R I      +    L K+ +  E+ +G+E+  +
Sbjct: 653  KRADIWGVYGDLLLKFGDGEDARRVLLRGIEGCSKSRGRLHLMKRMINLEERIGDEQSAQ 712

Query: 1787 YVKQK 1791
              + K
Sbjct: 713  EWRTK 717


>gi|313220406|emb|CBY31260.1| unnamed protein product [Oikopleura dioica]
          Length = 699

 Score =  140 bits (353), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 161/305 (52%), Gaps = 15/305 (4%)

Query: 1499 AKTIDEKNNRHAKKKEKE----------EREQEIRAAEERLLEKDAPRTPDEFERLVRSS 1548
            AK ++ ++ +  K KE E          E E + R AE  + +   P     +ER V ++
Sbjct: 381  AKEVERRSKKPQKTKEPEADSGKTLSLEEIEDKAREAEREMEKSKLPEDVSGWERAVITA 440

Query: 1549 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1608
            PN+S +W++Y AF ++  ++EK+R + +RAL+TI+ REE+++LNIW A  NLE  YG+  
Sbjct: 441  PNNSEIWLRYSAFHIASGEIEKSRMVMDRALKTIHFREEDDRLNIWKARLNLEALYGD-- 498

Query: 1609 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW--LRR 1666
            +E++   F  A +  D +KV+ A++G+   + +   A  +L   +KK+    ++W  L R
Sbjct: 499  KESLQSQFNEAKKCNDERKVYHAVIGIQLDSNKYSSAIPILRDAVKKYPEDIELWSKLGR 558

Query: 1667 VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1726
             Q +     E     +QRAL +     H+    + A L+F+ G  + G+++ E +L  + 
Sbjct: 559  CQ-IEDGSPEKATVTLQRALQANKAKTHVMITQKFAKLQFEFGDLENGKTILEQMLKVHA 617

Query: 1727 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1786
            KR D+W +Y D  ++ GD +  R +  R I      +    L K+ +  E+ +G+E+  +
Sbjct: 618  KRADIWGVYGDLLLKFGDGEDARRVLLRGIEGCSKSRGRLHLMKRMINLEERIGDEQSAQ 677

Query: 1787 YVKQK 1791
              + K
Sbjct: 678  EWRTK 682


>gi|302786996|ref|XP_002975268.1| hypothetical protein SELMODRAFT_415410 [Selaginella moellendorffii]
 gi|300156842|gb|EFJ23469.1| hypothetical protein SELMODRAFT_415410 [Selaginella moellendorffii]
          Length = 366

 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 154/336 (45%), Gaps = 123/336 (36%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 151  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 210

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
             +E++L  + S+ +S                                       LCHVSE
Sbjct: 211  HIEMSLAATTSQDSS--------------------------------------CLCHVSE 232

Query: 1368 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +S D + ++ T+Y+ G+ V+VKILKVD E +RISL MK+SY                   
Sbjct: 233  VSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLRMKASY------------------- 273

Query: 1428 IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDN 1487
                                    +  EDG             + P+E    +E+P   N
Sbjct: 274  ------------------------LTPEDG-------------IEPMEEEAINEEPSNTN 296

Query: 1488 GISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVR 1546
             +  N    +E   +D  + R  +              EE+LL+KD  P T D+FERLV 
Sbjct: 297  MLMDND-EREEEDYLDLASKRFPQ-----------LCMEEKLLQKDQPPETKDDFERLVA 344

Query: 1547 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1582
            +SPN                +++K R++AERAL+ I
Sbjct: 345  ASPN----------------NLDKVRAVAERALEKI 364



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 46/171 (26%)

Query: 1047 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106
            L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+N E+K + L   P    
Sbjct: 57   LGMSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSVNHERKQVDLSRHP---- 112

Query: 1107 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG------------------------G 1142
               KT D           +G ++G RI+++ +GVG                        G
Sbjct: 113  ---KTSDEQ-------FKKGGLLGRRITRVFAGVGRHTVQGRWESFGKVHGFVKNVTEKG 162

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FDPLSGYDE 1185
              V + P L  R+    L N  V +P   +  G+         +PLSG+ E
Sbjct: 163  CFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSGHIE 213


>gi|256090782|ref|XP_002581360.1| programmed cell death protein [Schistosoma mansoni]
          Length = 769

 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 176/769 (22%), Positives = 321/769 (41%), Gaps = 103/769 (13%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDP---ILDNEIEAN--EDNL--LPTIFHVGQ 57
           GV+  V +  L + LP G  G     D  D    +L    E+   +D+L  L  +F VGQ
Sbjct: 9   GVIKSVQKLYLEVQLPHGFLGRVNIYDVSDKYTELLRESAESGIIQDDLVELSDMFKVGQ 68

Query: 58  LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 117
            V C + + D+ +     ++  +SL   ++ K +  + V+  MV    V S+EDHGYI+ 
Sbjct: 69  TVRCFIKEADNSRGSGSTKRYIVSLNPKMVNKAVISKNVKPHMVFVGSVVSVEDHGYIVD 128

Query: 118 FGLPSFTGFLPRN----NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 173
            G+     FLP++    NL   S I   P +    V  S   +++V+ +++  D+    +
Sbjct: 129 PGVARMNCFLPKDQVDVNLDIGSLIPFTPHVSDPLVNSS---SKRVLKVTTRLDSTLSVL 185

Query: 174 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 233
           + D + ++ D ++PG  +   +   + + ++  F  YF       ++ N       K DY
Sbjct: 186 SPDSR-VNFDCMLPGTCLHASIVKKVTSTLVAEFSEYFVSISRTHYIGN-------KEDY 237

Query: 234 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP--------SHVKVGDIYDQSKVVRV 285
               KV   I+ VDP+++ +  +L P+L+ N  P         S   VG  +  S V RV
Sbjct: 238 QIGAKVFVCIILVDPSTKQLTGSLLPHLV-NPIPSVLNISEMLSKCPVGTRFSGSLVERV 296

Query: 286 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
           ++   +L+ +P T     A + I     +      K    GS +  RI     LE +A  
Sbjct: 297 NKR-AVLVKLPKTN-GLKAVIRIPKTGTKNNENF-KSLVVGSKLTCRITDHDFLENVAVA 353

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
                       +  ++KPG  V   V      G +V   G +  L P  H ++  +   
Sbjct: 354 TTNKKLLSLPFLSLHELKPGNKVSATVKRYSKTGIVVHLEGRIHGLIPYLHTTDINLKDH 413

Query: 406 GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT-------DRLITH 456
            +KFK G ++   VL +   + ++ +T K  L+ ++L I  S+   +       ++L+  
Sbjct: 414 REKFKAGEKVSCLVLQLDECANKLILTAKPGLLNAELPIFGSHEMYSALKNGNNNQLLIV 473

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR- 515
           G+I K+ + G  +   + ++G+ PR E GL       + ++ GQV+K +    I  S   
Sbjct: 474 GFIVKVSEKGLLISGLDNIRGWIPRRETGLADEDILQTNFYRGQVLKMKFKREINISSEN 533

Query: 516 --------------INLSFMMKPTRVSED---DLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
                         ++L F  K T+  +    + V++G L    V+ V    + + +  K
Sbjct: 534 EVEKDSRNIRSKYMLSLKFHSKKTKNMQSIFLNSVQIGQLFRATVNQVQDTGISLNLYDK 593

Query: 559 GYSKGTIPT--------EHLADHLEHATVMKSV---IKPGYEFD------QLLVLDNESS 601
             +    P           L+D+  +  ++      IKPG   D       ++V+D    
Sbjct: 594 NINDTVTPVLGTGFLSFSQLSDYESNQQLLSRYIKNIKPGSTLDWNHSARNVVVIDKGKQ 653

Query: 602 NLLLSAKYSLINSAQQLP-----------SDASHIHP-----------NSVVHGYVCNII 639
            ++LSA+ +L+ +A  L            S+AS   P            S    +V +  
Sbjct: 654 TVILSARPTLVQAASDLKTNINIDVDMVDSEASDKRPGFLRTFDELQVGSQWFAWVSHHK 713

Query: 640 ETGCFVRFLGRLTGFAPRSKAVDGQ---RADLSKTYYVGQSVRSNILDV 685
           + G FV F   + G AP+    D +     + ++ + VG +V + I++V
Sbjct: 714 DYGVFVHFPAGIYGLAPKHLLSDFRTQSNTNWTELFPVGATVITKIVEV 762


>gi|302779850|ref|XP_002971700.1| hypothetical protein SELMODRAFT_412236 [Selaginella moellendorffii]
 gi|300160832|gb|EFJ27449.1| hypothetical protein SELMODRAFT_412236 [Selaginella moellendorffii]
          Length = 479

 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 116/182 (63%), Gaps = 18/182 (9%)

Query: 1228 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1287
            D+  PG+    +E       + G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P +
Sbjct: 197  DLKRPGRGKMGLE-------LSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAE 249

Query: 1288 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1347
             FP GK+++GR+LS+EPLS  +E++L  + S+ +S            G+IV G+I  +E+
Sbjct: 250  MFPSGKVISGRILSIEPLSGHIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEA 304

Query: 1348 YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +G+FI++  +++     +       V N+ T+Y+ G+ V+VKILKVD E +RISLGMK S
Sbjct: 305  FGIFISLAKSDVASSLSIL------VSNLSTLYKVGQWVQVKILKVDAETKRISLGMKVS 358

Query: 1408 YF 1409
            Y 
Sbjct: 359  YL 360



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 165/372 (44%), Gaps = 82/372 (22%)

Query: 972  NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1030
            +L  N  I +TV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 42   SLRGNVHITETVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFET-VTIE 100

Query: 1031 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1090
            Q V  YV +V + W  L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+N
Sbjct: 101  QSVIRYVQEVKDNWTWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSVN 160

Query: 1091 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG---------GRISKILSGV- 1140
             E+K + L L P     SDK       ++Q FI+ G +           G++   LSG  
Sbjct: 161  HERKQVDLSLHP---KTSDK--QFKKGDLQ-FIYRGTVRKVLDLKRPGRGKMGLELSGFV 214

Query: 1141 -----GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FDPLSGYDEGQ 1187
                  G  V + P L  R+    L N  V +P   +  G+         +PLSG     
Sbjct: 215  KNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPSGKVISGRILSIEPLSG----- 269

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
                             H+E+SL       ++T S D S             +      I
Sbjct: 270  -----------------HIEMSL-------TATTSQDSSG-----------WKKFGAGEI 294

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDA---KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
            V G + N+ + G FI L++   A    +L+SNLS  Y         +G+ V  ++L V+ 
Sbjct: 295  VSGRIHNIEAFGIFISLAKSDVASSLSILVSNLSTLY--------KVGQWVQVKILKVDA 346

Query: 1305 LSKRVEVTLKTS 1316
             +KR+ + +K S
Sbjct: 347  ETKRISLGMKVS 358



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 200/463 (43%), Gaps = 96/463 (20%)

Query: 1189 VKCKVL---EISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
            V+ K+L   + SR  R    ++LSLR S L G      +D +  V T        E ++ 
Sbjct: 53   VRAKILSKRKTSRKHRNAATLDLSLRPSELAG------NDAACSVIT-------FETVTI 99

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSV 1302
               V  YV+ V     +++LS  L   + + + SD    +E  ++ F +G      + SV
Sbjct: 100  EQSVIRYVQEVKDNWTWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSV 159

Query: 1303 EPLSKRVEVTL--KTSDSRTASQSEINNLSNLHVGDI-----------------VIGQIK 1343
                K+V+++L  KTSD     Q +  +L  ++ G +                 + G +K
Sbjct: 160  NHERKQVDLSLHPKTSDK----QFKKGDLQFIYRGTVRKVLDLKRPGRGKMGLELSGFVK 215

Query: 1344 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403
             V   G F+ +   +L     +  LS   V N   ++ +G+ +  +IL ++     I + 
Sbjct: 216  NVTEKGCFVVLA-PSLEARIQLKNLSNSFVQNPAEMFPSGKVISGRILSIEPLSGHIEMS 274

Query: 1404 MKSSYFKNDADNLQMSSEEESDEAIEEVGSYN------RSSLLENSSVAVQDMDMESEDG 1457
            + ++  ++ +   +  + E     I  + ++       +S +  + S+ V ++       
Sbjct: 275  LTATTSQDSSGWKKFGAGEIVSGRIHNIEAFGIFISLAKSDVASSLSILVSNLS------ 328

Query: 1458 GSLVLAQIESRASVPPLEVNLDDEQPDMDNGIS---QNQGHTDEAKTIDEKNNRHAKKKE 1514
                L ++     V  L+V+ + ++  +   +S     +    E + I+E+ +      +
Sbjct: 329  ---TLYKVGQWVQVKILKVDAETKRISLGMKVSYLTPEEIEPMEEEAINEEPSNTNVLMD 385

Query: 1515 KEEREQEI---------------RAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKY 1558
             +ERE+E                 AA+E+LL+KD  P T D+FERL              
Sbjct: 386  NDEREEEDYLDLASKRFPQLCMEAAAKEKLLQKDQPPETKDDFERLC------------- 432

Query: 1559 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1601
                  +AD++K R++AERAL+ I  REE EK+NIW+AY NLE
Sbjct: 433  ------LADLDKVRAVAERALENIIYREEMEKMNIWMAYLNLE 469



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 24/207 (11%)

Query: 141 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK-DLKGIS-------IDLLVP----- 187
           K G   Q  +RS++  RK V LS  P T  K   K DL+ I        +DL  P     
Sbjct: 147 KVGDPFQCHIRSVNHERKQVDLSLHPKTSDKQFKKGDLQFIYRGTVRKVLDLKRPGRGKM 206

Query: 188 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 247
           G+ +S  V+++ E G  +         + + +L N+F   N    +   K ++ RIL ++
Sbjct: 207 GLELSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSF-VQNPAEMFPSGKVISGRILSIE 265

Query: 248 PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT 307
           P S  + ++L      + +       G+I   S  +      G+ + +  + V++   + 
Sbjct: 266 PLSGHIEMSLTATTSQDSSGWKKFGAGEIV--SGRIHNIEAFGIFISLAKSDVASSLSIL 323

Query: 308 ISDVAEEEVRKLEKKYKEGSCVRVRIL 334
           +S+        L   YK G  V+V+IL
Sbjct: 324 VSN--------LSTLYKVGQWVQVKIL 342


>gi|357460991|ref|XP_003600777.1| rRNA biogenesis protein RRP5 [Medicago truncatula]
 gi|355489825|gb|AES71028.1| rRNA biogenesis protein RRP5 [Medicago truncatula]
          Length = 180

 Score =  136 bits (343), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 117/180 (65%), Gaps = 15/180 (8%)

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            K+V  RV+SV PLS  VEVTLKTS   ++S+S I++L   HVGD++ G IK VE  GLFI
Sbjct: 4    KVVNNRVISVAPLSNCVEVTLKTSTFSSSSKSVISDLGKFHVGDVISGSIKSVEPSGLFI 63

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
             I+NT +VGLCHVSE+S+ H+DNIE  + AGEKV   +LKVD+E+  ISLGMK SY +  
Sbjct: 64   AIDNTKVVGLCHVSEISDKHIDNIEAKFGAGEKVNAIVLKVDEERHGISLGMKDSYMRGK 123

Query: 1413 ADNLQMSSEEESDEAIEE----VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESR 1468
               LQ+ S+E SDE I +    + S +R S          +MD++SE     +L+Q + R
Sbjct: 124  T-VLQIPSDEGSDEPIADGMKSISSTSRPS----------NMDIDSETDQFPILSQAQIR 172


>gi|389585916|dbj|GAB68646.1| hypothetical protein PCYB_135200 [Plasmodium cynomolgi strain B]
          Length = 435

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 145/264 (54%), Gaps = 21/264 (7%)

Query: 1537 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1596
            +P ++ERL+ S  N+S +W+ Y+A+ L    +E+AR  AERAL+TI+I +  EK NI+  
Sbjct: 186  SPADYERLLASEKNNSAIWVSYIAYHLEKGSLEEARKTAERALKTIDIHKVEEKRNIFFC 245

Query: 1597 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1656
            Y N+E  YG+  +E    VF+RAL  C+ KKV++  + + +  ++     +L  + IKKF
Sbjct: 246  YINMECSYGDKLKE----VFKRALLSCNEKKVYMHTMNVLKVNKKYNELKQLSEEAIKKF 301

Query: 1657 KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1714
             +S K+W   ++ +    ++   A  ++ ++L  L + KH++ +   A  E+K    +RG
Sbjct: 302  HYSKKIWSHYLEIIHSAFKDEAYAHEILLKSLHCLAKRKHLRMVINAARFEYKYANKERG 361

Query: 1715 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1774
            +S  +G                 +++ L  +  +R +FER  S     + MK +F K+L 
Sbjct: 362  KSETKG---------------EKKKLNLNQLQFVRNIFERFSSCKFKTRVMKMIFTKWLL 406

Query: 1775 YEKSVGEEERIEYVKQKAMEYVES 1798
            +EK+ G     + V++KA +YVES
Sbjct: 407  FEKNHGTVSSQKMVQKKAYDYVES 430


>gi|312075992|ref|XP_003140662.1| hypothetical protein LOAG_05077 [Loa loa]
          Length = 1279

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 231/962 (24%), Positives = 414/962 (43%), Gaps = 123/962 (12%)

Query: 99   GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRS 152
            G+VL   V+S+ED G I++ GL S    GFL   +L     + S I+ +P LL      S
Sbjct: 152  GLVLNGVVESVEDKGVIINLGLQSVELKGFLAEKHLPPTFQKESLIEGQPLLLRIQNENS 211

Query: 153  IDRTRKVVYLSSDPDTVSKCVTK-DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 211
             ++  +VV LS+ P+   +C+    +K + ++ L+PG ++         +GV ++     
Sbjct: 212  SNKKSRVVSLSAVPEM--ECLDDIAVKNLKLNDLMPGTLLLVNPLQPTASGVYVNIGNDI 269

Query: 212  TGTVDIFHLQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NR 265
             G V+  HL        ++ND +   K     ++F    S  + L  +P ++       R
Sbjct: 270  KGYVNRQHL-----PPRYRNDSFKCLKSFKTIVMFCQQNSNLLALNGHPDIIAASKFAKR 324

Query: 266  APPSHVKVGDIYDQSKVVRVDRG----LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 321
                +V  GDI  + KV  V++       L+L          A+   +++ E+ V     
Sbjct: 325  TNFENVHTGDII-ECKVSNVNKNGDVNFDLVLHGDERNSLVAAFARKTEL-EDHV----- 377

Query: 322  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 381
            +YK+G+  + R+L F+ +E +     +       +    D  PGM V  KV +V   G  
Sbjct: 378  EYKKGTIHQTRVLSFKMVERILIVATRKDILAQKMVCVKDAVPGMKVIAKVESVLPKGLF 437

Query: 382  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSK 439
            V+    +    P  H+S+  I +  K F VG EL  R+L V    +R+ +T+K++L  +K
Sbjct: 438  VKIYNSIPGFIPKIHLSDKLITRIDKHFAVGDELTCRILTVNEAKERLILTNKQSLTTNK 497

Query: 440  LAILSSYAEATDRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSM 495
              ++ SYAE T   IT G+I  + +H   G  + FY G +GF  P+    L       + 
Sbjct: 498  DTVIKSYAEVTTNAITTGYI--VSQHPSGGLIIGFYGGTRGFMFPKETERL------GTN 549

Query: 496  YHVGQVVKCRIMSSIPASRRINLSFM-----------MKPTRVSEDDLVKLGSLVSGVV- 543
              VG  V+ R++S  P   R+ ++              +P  +   + V   ++V  ++ 
Sbjct: 550  IKVGLTVRVRVVSVDPQRGRMLVAVANAANDGTEIAKAQPFLIDGGNSVSFSAVVMNILS 609

Query: 544  --DVVTPNAVVVYVIAKGYS-----KGTIPTEHLADHLE--HATVMKSVIKPGYEFDQLL 594
              +   PN ++   +  G       K  IP E L+D L+   A++ +S I  G    ++ 
Sbjct: 610  NDNKSKPNEILNVTVRLGKKLGGKVKAFIPKELLSDCLDLPFASLSES-IALGSVLPKVT 668

Query: 595  VLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNII----ETGCFVRFL 648
            VL + + NL +++K  +I+  ++ P  +   ++    +V G   NII    E G FV   
Sbjct: 669  VLGDVAGNLKVTSKRFMIDWLEKHPRITGLQNLTKGELVCG---NIIRKHKEMGYFVELA 725

Query: 649  GRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
            G     AP    R  A+     +L     +GQ+V + +  V+ E  R  L L    C   
Sbjct: 726  GGSALTAPARFIRPMALPVSMQELQ----IGQTVVARVSSVDLERKRFALILDAHLCIPP 781

Query: 705  DAS---FMQE--HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 759
             A    F     H+ LEE +    ++  N S++       IG  I+ KV E ++  VVV 
Sbjct: 782  GAELDYFAPSIVHYSLEE-LNWFIANNPNYSQVPE-----IGECIDIKVVEISECSVVVQ 835

Query: 760  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID-RFREANSN 818
            +  + D+ G   ++      ++ GS  +A +LDV    +L    L    +D   +  N  
Sbjct: 836  YASNPDLKGCAINNT---NILQKGSCAKALVLDV----KLPTCELVLFLLDGGVQHLNEK 888

Query: 819  RQAQKKKRKREASKDLGVHQTVNAIVEIVKE-NYLVLSLPEYNH---SIGYASVSDYNTQ 874
            +       K+E    + +H+   A+  +  E +  V+S+P   H   +I    + + + Q
Sbjct: 889  KLQSLLCSKKEFDAKIWLHKREYAVATVETEKSAFVVSIPMRLHPNVNITSVDLDENSNQ 948

Query: 875  KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGS 931
                 + ++G  +I T M +         L+  K  +  +++  K+ K+   Y    +G 
Sbjct: 949  CIITPKLISGNVMIGTAMEILKKYG----LIHRKFKTPIKSAVKKKLKQFKIYTAKVMGM 1004

Query: 932  LVQAEITEIKPLELRLKFGIGFHGRIHITEVN----DDKSNVVENLFSNFKIGQTVTARI 987
              + ++     LEL      G  GR+H +E +    D  S  +++     K G+TV  +I
Sbjct: 1005 WSKGDLYNAIELEL----PDGSIGRLHASEFDESFLDQTSQPIQSFLKKRK-GKTVNVKI 1059

Query: 988  IA 989
            + 
Sbjct: 1060 MC 1061


>gi|302824310|ref|XP_002993799.1| hypothetical protein SELMODRAFT_431837 [Selaginella moellendorffii]
 gi|300138362|gb|EFJ05133.1| hypothetical protein SELMODRAFT_431837 [Selaginella moellendorffii]
          Length = 429

 Score =  130 bits (327), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 128/214 (59%), Gaps = 38/214 (17%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P+    IGK          PLS 
Sbjct: 207  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPD----IGK----------PLSG 252

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV------G 1361
             +E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++        
Sbjct: 253  HIEMSLAATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGC 307

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1421
            LCHV+E+S D + ++ T+Y+ G+ V+VKILKVD E +RISLGMK+SY       L+   E
Sbjct: 308  LCHVAEVSYDFIQDLSTLYKVGQWVQVKILKVDGETKRISLGMKASYL-----TLEDGIE 362

Query: 1422 EESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1455
               +EAI E  S        N++V ++++D+ S+
Sbjct: 363  PMEEEAINEEPS--------NTNVLMREVDLASK 388



 Score =  103 bits (258), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 149/308 (48%), Gaps = 65/308 (21%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
            V+I Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+
Sbjct: 93   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHI 152

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1146
             S+N E+K + L L P     SDK              +GD++G RI+++ +GVGG  VQ
Sbjct: 153  RSVNHERKQVDLSLHP---KTSDKQ-----------FKKGDLLGRRITRVFAGVGGHTVQ 198

Query: 1147 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL--------EISR 1198
                 +G+VH   +KN+         ++G F  L+   E + ++ K L        +I +
Sbjct: 199  SRWESFGKVH-GFVKNV--------TEKGCFVVLAPSLEAR-IQLKNLSNSFVQNPDIGK 248

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
             + G  H+E+SL       ++T S D S             +      IV G + N+ + 
Sbjct: 249  PLSG--HIEMSL-------AATTSQDSS-----------GWKKFGAGEIVSGRIHNIEAF 288

Query: 1259 GCFIMLSRKLDAKVLL----------SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1308
            G FI L+   ++ V L          + +S  +++     + +G+ V  ++L V+  +KR
Sbjct: 289  GIFISLA---ESDVFLVCAPGCLCHVAEVSYDFIQDLSTLYKVGQWVQVKILKVDGETKR 345

Query: 1309 VEVTLKTS 1316
            + + +K S
Sbjct: 346  ISLGMKAS 353



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 27/32 (84%), Gaps = 1/32 (3%)

Query: 1524 AAEERLLEKD-APRTPDEFERLVRSSPNSSFV 1554
            AA+E+LL+KD  P T D+FERLV +SPNSS++
Sbjct: 398  AAKEKLLQKDQPPETMDDFERLVAASPNSSYM 429


>gi|61402583|gb|AAH91949.1| Pdcd11 protein [Danio rerio]
          Length = 400

 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 164/293 (55%), Gaps = 21/293 (7%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE--DNLLP--TIFHV 55
           + G V EV++ ++V+ LP GL G   +    DA   IL+++++ ++  + ++P   +F  
Sbjct: 81  MLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAYTNILNDKLDTDDGLEEVVPLSKLFTP 140

Query: 56  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 115
           G L+ C+V  LD  K+  G   + LS+    + K L+   ++  M L+  V+S+EDHGY+
Sbjct: 141 GMLIRCVVSSLDSAKE--GHISLKLSINPKDVNKALNSVALKPAMTLSGCVESVEDHGYL 198

Query: 116 LHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 175
           +  G+     FLP+   + +S  D+  G  +  ++  +  + +VV LS +P  + K   +
Sbjct: 199 VDIGIGGSKAFLPKK--STSSKRDLYVGQYVLVLIEDVKDSGRVVRLSQNPQALVKACAE 256

Query: 176 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 235
             +G ++D L+PG+++   V+ +  +G++++FL+ FTG VD  HL     +T     Y++
Sbjct: 257 TKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLSSFTGVVDFLHLDEDKEST-----YSK 311

Query: 236 HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRG 288
            +++ ARIL+V P++R VGL+L  +LL    PP    V D++   +V  V +G
Sbjct: 312 GQEILARILYVQPSTRQVGLSLRSHLL----PPGGA-VLDLHFSERVGEVVQG 359



 Score = 45.1 bits (105), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 122/295 (41%), Gaps = 54/295 (18%)

Query: 1153 GRVHFTELKNIC------VSDPLSGYDEG--QFDPLSG-YDEGQFVKCKVLEISRTVRGT 1203
            G V +  + NIC      ++D L   D+G  +  PLS  +  G  ++C V  +     G 
Sbjct: 100  GLVGYLPICNICDAYTNILNDKLD-TDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKEG- 157

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
             H+ L L        S N  D++       K L  +  L P M + G V++V   G  + 
Sbjct: 158  -HISLKL--------SINPKDVN-------KALNSVA-LKPAMTLSGCVESVEDHGYLVD 200

Query: 1264 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV---------AGRVLSVEPLSKRVEVTLK 1314
            +     +K  L   S     S +++  +G+ V         +GRV+    LS+  +  +K
Sbjct: 201  IGIG-GSKAFLPKKS----TSSKRDLYVGQYVLVLIEDVKDSGRVVR---LSQNPQALVK 252

Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
                  A   +   L NL  G ++ G +KRV  +GL +T   ++  G+     L ED   
Sbjct: 253  AC----AETKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFL-SSFTGVVDFLHLDEDK-- 305

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1429
              E+ Y  G+++  +IL V    R++ L ++S         L +   E   E ++
Sbjct: 306  --ESTYSKGQEILARILYVQPSTRQVGLSLRSHLLPPGGAVLDLHFSERVGEVVQ 358


>gi|302776692|ref|XP_002971496.1| hypothetical protein SELMODRAFT_412245 [Selaginella moellendorffii]
 gi|300160628|gb|EFJ27245.1| hypothetical protein SELMODRAFT_412245 [Selaginella moellendorffii]
          Length = 393

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 127/217 (58%), Gaps = 39/217 (17%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 208  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 267

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
             +E++L  + S+ +S                 G  K    +G            LCHVSE
Sbjct: 268  HIEMSLTATTSQDSS-----------------GWKK----FGC-----------LCHVSE 295

Query: 1368 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +S D + ++ T+Y+  + V+VKILKVD E +RISLGMK+SY   + D +    E   +EA
Sbjct: 296  VSYDFIQDLSTLYKVSQWVQVKILKVDAETKRISLGMKASYLTPE-DGI----EPMEEEA 350

Query: 1428 IEEVGSYNRSSLLENSSVAVQD-MDMESEDGGSLVLA 1463
            I E  S N + L++N     +D +D+ S+    L ++
Sbjct: 351  INEEPS-NTNVLMDNDEREEEDYLDLASKRFPQLCMS 386



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 51/247 (20%)

Query: 972  NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1030
            +L  N  I +TV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 42   SLRGNVHITETVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFE-TVTIE 100

Query: 1031 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1090
            Q    YV +V + WA L +S HLK  LFILD++ +PSEL+ F+     G     +     
Sbjct: 101  QSDIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFRALQSRGPVPVPYK---K 157

Query: 1091 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ---- 1146
             E + + L L P       KT D      + F  +GD++  RI+++ +GVGG  VQ    
Sbjct: 158  CEPRKVDLSLHP-------KTSD------EQF-KKGDLLDRRITRVFAGVGGHTVQGRWE 203

Query: 1147 --------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FD 1178
                                + P L  R+    L N  V +P   +  G+         +
Sbjct: 204  SFGKVHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIE 263

Query: 1179 PLSGYDE 1185
            PLSG+ E
Sbjct: 264  PLSGHIE 270


>gi|355709772|gb|AES03703.1| programmed cell death 11 [Mustela putorius furo]
          Length = 399

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 201/418 (48%), Gaps = 40/418 (9%)

Query: 462 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
           ++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF 
Sbjct: 1   VKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSKERMLLSFK 60

Query: 522 MKPTRVSED--------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
           +      E           V LG LV   V   T + + V V+    +   +PT HL+DH
Sbjct: 61  LLSDPKKEHLGHSQKKRRTVSLGQLVDVKVLEKTKDGLEVAVLPYN-TPAFLPTPHLSDH 119

Query: 574 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
           + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P   + IHP  ++
Sbjct: 120 VANGPLLYHWLQTGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKSFAEIHPGMLL 179

Query: 632 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
            G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 180 IGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQR 239

Query: 692 ITLSLKQSCCSSTDASFMQEHF---LLEEK--IAMLQSSKHNGSELKWVEGFIIGSVIEG 746
           + LSL+ S C   D +          LEE+  +  L S++ +   ++ +     G V++ 
Sbjct: 240 MLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNR-DSVLIQTLAEMTPGMVLDL 298

Query: 747 KVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
           +V E  + G VV F E   V G +   + +  AG  VE G   +  IL+V   +  V +S
Sbjct: 299 EVQEVLEDGSVV-FSE-GPVPGLVLRASRYHRAGQEVEPGQKKKVVILNVDMLKLEVHVS 356

Query: 804 LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 861
           L    +        NR+A+K K+  E            A+V+ ++E++ V SL E  H
Sbjct: 357 LCHDLV--------NRRAKKLKKGSE----------YQAVVQHLEESFAVASLVETGH 396



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
             + + +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V
Sbjct: 168  KSFAEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 226

Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
              K+  VD+EK+R+ L ++ S
Sbjct: 227  VAKVTNVDEEKQRMLLSLRLS 247



 Score = 40.8 bits (94), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 35/242 (14%)

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            G+  +   ++ P M++ G+VK++   G F+     L      + +SD +V S    F  G
Sbjct: 164  GQDPKSFAEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEG 223

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDS-------------------RTASQSEINN----- 1328
            + V  +V +V+   +R+ ++L+ SD                    R   +S ++N     
Sbjct: 224  QTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVL 283

Query: 1329 ---LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1385
               L+ +  G ++  +++ V   G  +  E   + GL  V   S  H    E     G+K
Sbjct: 284  IQTLAEMTPGMVLDLEVQEVLEDGSVVFSEGP-VPGL--VLRASRYHRAGQEV--EPGQK 338

Query: 1386 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES-DEAIEEVGSYNRSSLLENSS 1444
             KV IL VD  K  + + +        A  L+  SE ++  + +EE  S+  +SL+E   
Sbjct: 339  KKVVILNVDMLKLEVHVSLCHDLVNRRAKKLKKGSEYQAVVQHLEE--SFAVASLVETGH 396

Query: 1445 VA 1446
            +A
Sbjct: 397  LA 398


>gi|302822837|ref|XP_002993074.1| hypothetical protein SELMODRAFT_431207 [Selaginella moellendorffii]
 gi|300139074|gb|EFJ05822.1| hypothetical protein SELMODRAFT_431207 [Selaginella moellendorffii]
          Length = 417

 Score =  128 bits (321), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 67/266 (25%)

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            + EGQFV+C+VL++ R  RG   +ELS                                 
Sbjct: 139  FTEGQFVRCRVLDLKRPGRGKMGLELS--------------------------------- 165

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                   G+VKN   K         L+A++ L NLS+ +V++P + FP GK+++GR+LS+
Sbjct: 166  -------GFVKNGRRK-------VSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSI 211

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV-- 1360
            EPLS  +E++L  + S+ +S            G+IV G+I  +E++ +FI++  +++   
Sbjct: 212  EPLSGHIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFRIFISLAESDVFLV 266

Query: 1361 ----GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
                 LCHVSE+  D + ++ T+Y+ G+ V+VKIL   KE +RISLGMK+SY   + D +
Sbjct: 267  CAPGCLCHVSEVFYDFIQDLSTLYKVGQWVQVKIL---KETKRISLGMKASYLTPE-DGI 322

Query: 1417 QMSSEEESDEAIEEVGSYNRSSLLEN 1442
            +   E    EAI E  S N + L++N
Sbjct: 323  ETMEE----EAINEEPS-NTNVLMDN 343



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1072
            V+I Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F
Sbjct: 81   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERF 126


>gi|391342289|ref|XP_003745453.1| PREDICTED: protein RRP5 homolog [Metaseiulus occidentalis]
          Length = 1008

 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 164/707 (23%), Positives = 279/707 (39%), Gaps = 92/707 (13%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGL-----------------RGLARAADALDPILDNEIEA 43
           M L G V  V E  L I LPG +                 R  A ++      L  + + 
Sbjct: 111 MVLLGAVHYVQENSLRIALPGCVAQLPLNQLSHPYNDLVQRWRAESSAVKRRGLGQKAQP 170

Query: 44  NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 103
            +   L  ++ VG ++  +VL      K  G   I LS   + +  G++ ET+++GM+L 
Sbjct: 171 EKLMRLDAMYKVGHIIKVVVLS-----KNSGN--INLSALCNHVNGGITRETLRDGMILQ 223

Query: 104 AYVKSIEDHGYILHFGLPSF-TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 162
           A V S+ED+GY +  G+    + F+  +N  E   +     + L  V +S     K V  
Sbjct: 224 AAVASVEDYGYSIELGIDGLASAFVSADNFTEVMYVG---QIFLVRVSKSHGGRLKFV-- 278

Query: 163 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD--IFHL 220
              P    + V KD    +++ + PG++    V    ENGV L+    F G+V   +   
Sbjct: 279 ---PHHFEE-VAKD-NDWNLNNVTPGLVAEGTVLQSDENGVCLAL---FDGSVTACVEPR 330

Query: 221 QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH---------- 270
           Q         ND     KV   +++  P        LN      R PP H          
Sbjct: 331 QCLRGAAVSIND-----KVRVILMYTHPI-------LNTVYCSMRIPPVHPADPFKEFHG 378

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIP--STPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 328
           + +G +  ++ VV+V     + LDIP  ++  +  A     +V+++E       +  G  
Sbjct: 379 LSLGQLVKKAVVVQVTSSF-VKLDIPIKNSRHTVCAIAAKPNVSDDEAADPSDVFSVGQI 437

Query: 329 VRVRILGFRHLEG-LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 387
              R++G    EG L   +  +   EG  +T  ++  G ++  KV   +  G + +   G
Sbjct: 438 APCRVIGMSLFEGELYVSLRHSVVIEGCYYTEHELYVGRILPAKVKYTNDCGIVFEICPG 497

Query: 388 VKALCPLPHMSEF-------EIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKS 438
             A C     S         E   PGK  +V      R +  K    R  VT  K L+KS
Sbjct: 498 TIAFCDFTEASPILNKSNVAEKYPPGKPVQVA----IRYINGKHYPPRYFVTCNKQLIKS 553

Query: 439 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 498
           K  I+  Y E     I+ G +   E+ G  + FYN V+G+ P  +L       P  ++  
Sbjct: 554 KHGIIDRYDEGNVGKISDGIVLLTERRGLLLGFYNKVRGWVPEEQLP-HSASRPDEVFRK 612

Query: 499 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG------------VVDVV 546
           GQV+  ++++  P + R+ LS     ++ S      +G+ +S                VV
Sbjct: 613 GQVLSAKVLNVTPEASRMTLSLRCVDSKESTGQTDDVGAGISTDRRYIFEGKTHLEALVV 672

Query: 547 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 606
                 + ++ +G+ K ++P EHL+D  + +  +   I  G   D+L V  +     + S
Sbjct: 673 DKEGTCLKIVVEGFGKSSLPAEHLSDFPDLSKSLLERINIGDRLDELAVFGSSEGTTIFS 732

Query: 607 AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
            K  +        S+A  I   +++   V  +   G  V     L+ 
Sbjct: 733 MKPLVAQVLASCGSEAMKITEGAILPALVKKVTGRGVMVSLPNNLSA 779


>gi|164660949|ref|XP_001731597.1| hypothetical protein MGL_0865 [Malassezia globosa CBS 7966]
 gi|159105498|gb|EDP44383.1| hypothetical protein MGL_0865 [Malassezia globosa CBS 7966]
          Length = 1217

 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 135/267 (50%), Gaps = 24/267 (8%)

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
            LV  +G     R+H TE  +   +  L              D G    C VL + +  R 
Sbjct: 820  LVSLLGTPCRARLHATECSDSLANATLP-------------DVGDQCTCIVLSVRKKRR- 865

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
                ++S+R S        S D++  VD P   ++    L   M ++G VK VT+ G ++
Sbjct: 866  --EADVSIRPS----RLAPSDDVNASVDDP--VVDSTAQLEIGMHIRGLVKAVTNHGVYV 917

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
             L    DA+V++  L D YV+    +F +G+ V G +L +EP + ++E++LK S      
Sbjct: 918  SLGPHTDARVMIKELFDEYVKDFRTKFQVGQCVRGTILQIEP-NGQIELSLKKSRLEGVK 976

Query: 1323 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1382
             S     S +H G+ V   ++ +  YG+F+ ++ T++ GLCH SELS++   N    +  
Sbjct: 977  PSA-GAWSKIHEGEKVKAHVRGITEYGIFLQVDGTDVSGLCHKSELSDNKSANAIRAFAV 1035

Query: 1383 GEKVKVKILKVDKEKRRISLGMKSSYF 1409
            G++VK  +LK+D +KRR++ G+K SYF
Sbjct: 1036 GDRVKAVVLKMDADKRRVAFGLKPSYF 1062



 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 117/512 (22%), Positives = 212/512 (41%), Gaps = 60/512 (11%)

Query: 52  IFHVGQLVSCIV--LQLDDDKKEIG-----------KRKIWLSLRLSLLYKGLSLETVQE 98
           IF VGQ V   V  +     K++ G            +++ L++  +++ +G+    +  
Sbjct: 204 IFSVGQWVRASVESVTAAGSKRQWGMGREGGEYERESQRVQLTMEPTIVNEGIRASDLSP 263

Query: 99  GMVLTAYVKSIEDHGYILHFGL-PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR 157
           G VL+A V+S ED+GY L  G+     GFLP  +      + +     + G  R++   R
Sbjct: 264 GYVLSAAVQSPEDYGYTLDLGINDDVHGFLPTKDRLRVGSVVLVEVSSVDG--RAV---R 318

Query: 158 KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 217
             +  S +P  V+   ++         ++PG+ V   + S +  G+ +     + GTVD 
Sbjct: 319 CQLATSGEPAPVTTAPSQSA-------MLPGVPVRALITSHVPQGLSVKLFGMWDGTVDS 371

Query: 218 FHLQNTFPTTNWKNDYNQHKKVNARILFVDPT--------------SRAVGLTLNPYLLH 263
           FH+       +        KK+ AR+L+  P               +R +GL+   +++ 
Sbjct: 372 FHVPRGLAHDDAA--LAPGKKIMARVLWNMPADYEQAQEASIDAVGARRIGLSCVSHVVS 429

Query: 264 -------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 316
                     P +H     +  + +V  V R  GL+ ++P   +  PA+V IS V++E +
Sbjct: 430 LETPSAAGSVPLTHAFPIGMQLRVRVQAVFREWGLVCEVPGQDI--PAFVHISSVSDEHI 487

Query: 317 RKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
             L      ++ G+    R+ G    + L    ++AS         S+V  G VV+  + 
Sbjct: 488 DTLSATSGPWRVGTEHEARVTGHALTDCLLMMSMRASVLSKEFMRVSEVPIGQVVRVSIR 547

Query: 374 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTH 431
            V      V+  G V  +    H S+  +  P KK+K   EL  R++       RI +T 
Sbjct: 548 KVTPKAIFVRMNGNVDGVVFPMHFSDVRLTHPEKKYKPNLELKARIIHTDPMRNRIVLTL 607

Query: 432 KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 491
           K++L+ S L +L+   +    ++T+  + K       V     ++   P +E   D    
Sbjct: 608 KRSLITSDLPLLAKLEDVRVGVVTNAVVLKQLPASMLVELGGTLRAVVPFAEAS-DTAMT 666

Query: 492 PSSMYHV---GQVVKCRIMSSIPASRRINLSF 520
              +  +   G+VVK RI    P + RI  S 
Sbjct: 667 SEQLGELNPTGKVVKVRITKFEPETGRIMASM 698



 Score = 48.1 bits (113), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 115/541 (21%), Positives = 212/541 (39%), Gaps = 48/541 (8%)

Query: 188  GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 247
            G +V   ++ +    + +       G V   H  +    T+ +  Y  + ++ ARI+  D
Sbjct: 539  GQVVRVSIRKVTPKAIFVRMNGNVDGVVFPMHFSDVR-LTHPEKKYKPNLELKARIIHTD 597

Query: 248  PTSRAVGLTLNPYLLHNRAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 303
            P    + LTL   L+ +  P       V+VG + +   VV       +L+++  T  +  
Sbjct: 598  PMRNRIVLTLKRSLITSDLPLLAKLEDVRVGVVTN--AVVLKQLPASMLVELGGTLRAVV 655

Query: 304  AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD-V 362
             +   SD A     +L +    G  V+VRI  F    G     +K ++   L   + D V
Sbjct: 656  PFAEASDTAMTS-EQLGELNPTGKVVKVRITKFEPETGRIMASMKQASSVYLQRLNVDAV 714

Query: 363  KPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFKVGAELVFRVL 420
              G  V  +     D    +V  P G +AL  L  +S    V   K +  + A  +   L
Sbjct: 715  DVGERVAARFAGWQDDVAILVLEPSGTRALLSLHDLSRQRRVDADKVRASLAANELLSDL 774

Query: 421  GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK--IEKHGCFVRFYNGVQGF 478
             V         KK  VK  + +     +A+  +   G      +E H   +     + G 
Sbjct: 775  YVA--------KKNAVKGYVVLSYESPDASKTVEVGGRYEARVVETHHDKLYSLVSLLGT 826

Query: 479  APRSELGLDPGCEPS----SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV- 533
              R+ L     C  S    ++  VG    C ++S     R  ++S  ++P+R++  D V 
Sbjct: 827  PCRARLHATE-CSDSLANATLPDVGDQCTCIVLSVRKKRREADVS--IRPSRLAPSDDVN 883

Query: 534  --------------KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 579
                          ++G  + G+V  VT + V  YV    ++   +  + L D  E+   
Sbjct: 884  ASVDDPVVDSTAQLEIGMHIRGLVKAVTNHGV--YVSLGPHTDARVMIKELFD--EYVKD 939

Query: 580  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 639
             ++  + G      ++    +  + LS K S +   +      S IH    V  +V  I 
Sbjct: 940  FRTKFQVGQCVRGTILQIEPNGQIELSLKKSRLEGVKPSAGAWSKIHEGEKVKAHVRGIT 999

Query: 640  ETGCFVRFLGR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            E G F++  G  ++G   +S+  D + A+  + + VG  V++ +L ++++  R+   LK 
Sbjct: 1000 EYGIFLQVDGTDVSGLCHKSELSDNKSANAIRAFAVGDRVKAVVLKMDADKRRVAFGLKP 1059

Query: 699  S 699
            S
Sbjct: 1060 S 1060



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K   ++ ++    +V+  ++ VT K  F+ ++  +D  V   + SD  +  PEK++    
Sbjct: 528  KEFMRVSEVPIGQVVRVSIRKVTPKAIFVRMNGNVDGVVFPMHFSDVRLTHPEKKYKPNL 587

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             +  R++  +P+  R+ +TLK S   T+    +  L ++ VG +    + +     + + 
Sbjct: 588  ELKARIIHTDPMRNRIVLTLKRS-LITSDLPLLAKLEDVRVGVVTNAVVLKQLPASMLVE 646

Query: 1354 IENTNLVGLCHVSELSEDHV--DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  T L  +   +E S+  +  + +  +   G+ VKV+I K + E  RI   MK +
Sbjct: 647  LGGT-LRAVVPFAEASDTAMTSEQLGELNPTGKVVKVRITKFEPETGRIMASMKQA 701



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 504 CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 563
           C +M S+ AS  ++  FM    RVSE   V +G +V   +  VTP A+  +V   G   G
Sbjct: 515 CLLMMSMRASV-LSKEFM----RVSE---VPIGQVVRVSIRKVTPKAI--FVRMNGNVDG 564

Query: 564 TIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD 621
            +   H +D  L H    +   KP  E    ++  D   + ++L+ K SLI S   L + 
Sbjct: 565 VVFPMHFSDVRLTHP---EKKYKPNLELKARIIHTDPMRNRIVLTLKRSLITSDLPLLAK 621

Query: 622 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-----QRADLSKTYYVGQ 676
              +    V +  V   +     V   G L    P ++A D      Q  +L+ T   G+
Sbjct: 622 LEDVRVGVVTNAVVLKQLPASMLVELGGTLRAVVPFAEASDTAMTSEQLGELNPT---GK 678

Query: 677 SVRSNILDVNSETGRITLSLKQS 699
            V+  I     ETGRI  S+KQ+
Sbjct: 679 VVKVRITKFEPETGRIMASMKQA 701


>gi|291000969|ref|XP_002683051.1| RRP5 protein [Naegleria gruberi]
 gi|284096680|gb|EFC50307.1| RRP5 protein [Naegleria gruberi]
          Length = 290

 Score =  122 bits (305), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 145/288 (50%), Gaps = 54/288 (18%)

Query: 1559 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL--ENEYGNPPEEAVVKVF 1616
            M FML+    EKA+ I ERA+  I+  +ENE+ N+W A  +L   N  GN     V  V 
Sbjct: 1    MTFMLNTYGFEKAKEIGERAVNRIHFSKENERFNLWSAILSLYVSNNRGN-----VDSVI 55

Query: 1617 QRALQYCDPKKVHLALL-------GLYERTEQ----------------------NKLA-- 1645
            ++ALQ     K HL  L        LYE+ +Q                      NK A  
Sbjct: 56   EKALQ--GASKPHLIYLQYAKILNKLYEKKKQRMDATEEEEDSQSENEEDEELKNKRANE 113

Query: 1646 -DELLYKMIKKFKHSCKVWLRRVQRLLKQQQE----------GVQAVVQRALLSLPRHKH 1694
             +ELL K+ + ++ +CK + R  +++ ++ ++            + V+ R+L   P+ +H
Sbjct: 114  LEELLTKIDQVYRKACKKY-RNEKKVFEEYEQWCISTLKDIKKAEHVLNRSLKVYPQKEH 172

Query: 1695 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR-LGDVDLIRGLFE 1753
            I   S+ AI+ +K       R+  E I+   PKR+D WSIYLD E +   D   IR LFE
Sbjct: 173  ISLKSKFAIILYKCENTIEARNAMENIIQNSPKRSDAWSIYLDCEQQHTNDQRYIRELFE 232

Query: 1754 RAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800
            R  +L +L  KKMK   ++YL++E   G+ ER E+VKQ A EY++S L
Sbjct: 233  RVCNLTTLSTKKMKSFLQRYLKFETQHGDSERQEHVKQIAKEYIQSKL 280


>gi|167380574|ref|XP_001735374.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165902669|gb|EDR28428.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 202

 Score =  121 bits (304), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 120/202 (59%), Gaps = 5/202 (2%)

Query: 1596 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1655
            A   LE  +G+  E+++ KV+  AL+ CD KK+ L ++  +   E+ +  ++++  + KK
Sbjct: 2    ALMKLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMI--HIYKEKKEEEEKIIRIIFKK 57

Query: 1656 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1714
             K SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+G
Sbjct: 58   VKGSCKVYKKYCNFLMRNNREEEIKNTISKAKTTLDKKKMISLEIHIARLEYKYGSVDKG 117

Query: 1715 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1774
            RSMFE IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    KYLE
Sbjct: 118  RSMFEDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLSTKTMKTFLTKYLE 177

Query: 1775 YEKSVGEEERIEYVKQKAMEYV 1796
            +E   G+E + E+V+  A  +V
Sbjct: 178  FEIKYGDESKQEHVRDIAKSFV 199


>gi|167393838|ref|XP_001740734.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165895030|gb|EDR22836.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 202

 Score =  121 bits (304), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 117/202 (57%), Gaps = 5/202 (2%)

Query: 1596 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1655
            A   LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +     +  + KK
Sbjct: 2    ALIQLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEEEEKINRI--IFKK 57

Query: 1656 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1714
             K SCKV+ +    +++  ++E  +  + +A  +L + K I      A LE+K G  D+G
Sbjct: 58   VKGSCKVYKKYCNFIMRNNREEENKNTISKAKTTLDKKKMISLEIHIARLEYKYGSVDKG 117

Query: 1715 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1774
            RSMFE IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    KYLE
Sbjct: 118  RSMFEDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLSTKTMKTFLTKYLE 177

Query: 1775 YEKSVGEEERIEYVKQKAMEYV 1796
            +E   G+E + E V+  A  +V
Sbjct: 178  FEIKYGDESKQENVRDIAKSFV 199


>gi|167388381|ref|XP_001738546.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165898191|gb|EDR25125.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 199

 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 114/191 (59%), Gaps = 5/191 (2%)

Query: 1600 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1659
            LE  +G+  E+++ KV+   L+ CD KK+ L ++  +   E+ +  ++++  + KK K S
Sbjct: 3    LEANHGD--EKSLKKVYNEVLEVCDRKKIMLHMI--HIYKEKKEEEEKIIRIIFKKVKGS 58

Query: 1660 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1718
            CKV+ +    L++  ++E  +  + +A  +L + K I      A LE+K G  D+GRSMF
Sbjct: 59   CKVYKKYCNFLMRNNREEENKNTISKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSMF 118

Query: 1719 EGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1778
            E IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    KYLE+E  
Sbjct: 119  EDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFEIK 178

Query: 1779 VGEEERIEYVK 1789
             G+E + E+V+
Sbjct: 179  YGDESKQEHVR 189


>gi|154274013|ref|XP_001537858.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415466|gb|EDN10819.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 799

 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 149/605 (24%), Positives = 263/605 (43%), Gaps = 41/605 (6%)

Query: 53  FHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 109
           F +GQ +   V   + +    K  GK+ I LS+       GLS   +     + A V S+
Sbjct: 189 FKLGQYLRAAVTSTETEVNHGKIKGKKHIELSVDPREANSGLSKSDLVVNATVQASVLSL 248

Query: 110 EDHGYILHFGLP--SFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 166
           EDHG ++  GL      GF+    +  +   + +K G +   VV   +    VV LS++ 
Sbjct: 249 EDHGLVMDLGLEDGQTRGFMSSKEIPHDLELLQIKEGTVFLCVVTGHNANGNVVKLSANL 308

Query: 167 DTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
            T              +I   +PG      +  +   G+    +      VDI     T 
Sbjct: 309 PTAGSIKKSHFLTSAPTIHSFLPGTAAEILLTQVTSTGMAGKIMGMLDAVVDIVQSGATA 368

Query: 225 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN---------PYLLHNRAPPSHV-KVG 274
              +    Y+   K+  R++   PT+  + L  +         P +L  ++    V  + 
Sbjct: 369 GKEDITARYHVGAKIKGRLICTFPTAEPLKLGFSILDHVVKFMPTVLDRKSSCEVVPAIS 428

Query: 275 DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRV 331
            I  + KV +V+ GLG+             +V IS +++++V  +   +  Y   S    
Sbjct: 429 AIVPEVKVTKVEPGLGVYAQFNDKHY---GFVHISRLSDDKVDSISSTQGPYMVDSTHEA 485

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPG 386
           RI+GF  L+ L    L+    +       DV  G VVKGK+    I  D   G IV    
Sbjct: 486 RIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLAD 545

Query: 387 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILS 444
           G+  L P  HMS+ ++  P KKF+ G ++  R+L V  + +++ +T KKTL+ S+ +   
Sbjct: 546 GISGLVPGMHMSDTKLQHPEKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWC 605

Query: 445 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 504
            Y++      + G I  I+ HG  V+FY  V+GF P SE+      +P+  +++GQVV  
Sbjct: 606 DYSDILPGNKSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNV 665

Query: 505 RIMSSIPASRRINLSF--MMKPTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGY 560
             ++     R++ +S    +  T   +  L  +  G+ VSG V   +   +++ +   G 
Sbjct: 666 HALNVDAELRKLVVSCKDQLSSTEAYKRALEHIHPGNTVSGTVFEKSNEDILLKLEDSGL 725

Query: 561 SKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ- 616
               +  EH++D          + I+ G + ++LL+L+ + S+ L+  + K SL  + Q 
Sbjct: 726 V-ARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNIQKSHQLIKVTNKPSLKQARQR 784

Query: 617 -QLPS 620
            +LP+
Sbjct: 785 GELPT 789



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 22/228 (9%)

Query: 1238 KIEDLSPNMIVQGYVKNV-----TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            ++ED++   +V+G ++ +        G  + L+  +   V   ++SD  ++ PEK+F  G
Sbjct: 512  RLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHPEKKFREG 571

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
              V+ R+LSV  L KR            +  S   + S++  G+   G I  ++S+G  +
Sbjct: 572  VQVSARILSVN-LEKRQLRLTLKKTLLNSESSTWCDYSDILPGNKSPGTIISIQSHGAIV 630

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
                  + G   VSE+SE ++ +    +  G+ V V  L VD E R++ +  K       
Sbjct: 631  QFYG-EVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVDAELRKLVVSCKD------ 683

Query: 1413 ADNLQMSSEEESDEAIEEV--GSYNRSSLLENSSVAVQDMDMESEDGG 1458
                Q+SS E    A+E +  G+    ++ E S+   +D+ ++ ED G
Sbjct: 684  ----QLSSTEAYKRALEHIHPGNTVSGTVFEKSN---EDILLKLEDSG 724



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 125/270 (46%), Gaps = 22/270 (8%)

Query: 459 ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 514
           +TK+E   G + +F +   GF   S L  D     SS    Y V    + RI+     S 
Sbjct: 436 VTKVEPGLGVYAQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVG---FSA 492

Query: 515 RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 565
             NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 493 LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 551

Query: 566 PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 623
           P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 552 PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 608

Query: 624 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
            I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 609 DILPGNKSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 668

Query: 684 DVNSETGRITLSLKQSCCSSTDASFMQEHF 713
           +V++E  ++ +S K    S+       EH 
Sbjct: 669 NVDAELRKLVVSCKDQLSSTEAYKRALEHI 698



 Score = 48.9 bits (115), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 127/289 (43%), Gaps = 37/289 (12%)

Query: 1126 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            G +V G+I K+L    G+ GL+V +   + G V    + +  +  P     E +F     
Sbjct: 519  GAVVKGKIEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHP-----EKKFR---- 569

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
              EG  V  ++L ++   R           + +  +  + SD+      PG       + 
Sbjct: 570  --EGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYSDI-----LPG-------NK 615

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
            SP  I+     ++ S G  +    ++   + +S +S+ Y++ P + F IG++V    L+V
Sbjct: 616  SPGTII-----SIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNV 670

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
            +   +++ V+ K  D  +++++    L ++H G+ V G +    +  + + +E++ LV  
Sbjct: 671  DAELRKLVVSCK--DQLSSTEAYKRALEHIHPGNTVSGTVFEKSNEDILLKLEDSGLVAR 728

Query: 1363 C---HVSELSEDHVDNIETIYRAGEKV-KVKILKVDKEKRRISLGMKSS 1407
                HVS+             R G+K+ ++ IL + K  + I +  K S
Sbjct: 729  LNAEHVSDGQASRNGAALARIRVGQKLNELLILNIQKSHQLIKVTNKPS 777


>gi|70924365|ref|XP_735043.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56508345|emb|CAH80488.1| hypothetical protein PC000068.04.0 [Plasmodium chabaudi chabaudi]
          Length = 199

 Score =  112 bits (280), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 107/185 (57%), Gaps = 6/185 (3%)

Query: 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK 1590
            + D    P+++E+L+ S  N S +WI Y+A+ L   ++++AR+IAERAL+TI+I    EK
Sbjct: 19   QNDEKVKPNDYEKLLVSEKNKSTIWISYIAYYLEKGNIQEARNIAERALKTIDIHLIEEK 78

Query: 1591 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLY 1650
            LNI++ Y N+E  YG+   +    +F+RAL   + K ++L  + + +  ++     EL  
Sbjct: 79   LNIYLCYINMECAYGDNLND----IFKRALLVNNEKSIYLHTMNILKMNKKYNELKELCE 134

Query: 1651 KMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708
            + IKKFK+S K+W R ++ L      +E    ++  +L +LP+ KH+  I   A  E+K 
Sbjct: 135  EAIKKFKYSKKIWTRYLELLHNTLNDEEYAHNILLXSLHALPKRKHLNIIINAARFEYKY 194

Query: 1709 GVADR 1713
               +R
Sbjct: 195  SNIER 199


>gi|403160369|ref|XP_003320886.2| hypothetical protein PGTG_02908 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375169528|gb|EFP76467.2| hypothetical protein PGTG_02908 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1187

 Score =  111 bits (277), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 151/642 (23%), Positives = 267/642 (41%), Gaps = 95/642 (14%)

Query: 77  KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--------------- 121
           K+ L++    +  G+    +Q  M LT  VKSIED GYI+  G+                
Sbjct: 199 KVTLTIDPVHINSGIDKSDLQGRMTLTGAVKSIEDRGYIIDLGISVDSNVDSATSQASAN 258

Query: 122 SFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 173
           + T F+   +  + +G++ +         G +L   +  +        +S +   +S+ V
Sbjct: 259 NLTAFISFADATKATGVNHQDEPSLQWEVGQVLWCRINKLSENGATCMVSVNAQDISRSV 318

Query: 174 TKDLKGISIDLLVPGMMVSTRVQSILE-NGVMLSFLTYFTGTVDIFHLQ-NTFPTTNWKN 231
                  +ID ++P  MVS  + S++   G+ ++ L +F  T+ + HL+ ++    +   
Sbjct: 319 L--TAATNIDSILPLHMVSCLITSVIPGQGLNVTLLGFFKATIQVPHLECHSTTGVDLSE 376

Query: 232 DYNQHKKVNARILF-VDPTSRAVGLTLNPYLLHNR--------------AP--PSHVK-- 272
            +   +K+ AR+L+   P+   V L  N  LL  +               P  P+H++  
Sbjct: 377 KFKVGQKLRARVLWDTIPSKNHVSLEGNESLLGPKIFSLSIFDHVVKLDTPGLPTHLQNG 436

Query: 273 ---------------VGDIYDQSKVVRVDRGL-----------GLLLDIPSTPVSTPAYV 306
                          +G  +   ++ RVD              GL ++I   PV+     
Sbjct: 437 ERTRCDKIDQLLLYPIGYTFQTVRIFRVDEEWGVYATCVNGEDGLPIEI-DPPVAFAHIA 495

Query: 307 TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGM 366
            ISD     + K    YK G+  + R+ G   ++G+    L+ S  E       D+  G 
Sbjct: 496 AISDSFLSCLSKDSGPYKVGTTHKARVTGVSPVDGVLQLTLQPSVVEQAYMRSEDIPIGA 555

Query: 367 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
           ++ G +  + +   IV+  GG  A+    H S+ +   P KKF  GA++  RVL     R
Sbjct: 556 LMNGTIKKLTATNLIVRIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARVLYTNPDR 615

Query: 427 --ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR--S 482
             I +T +KTLV++   I++SY  A+        ITK+E+    + F+   +G  PR  +
Sbjct: 616 DQIVLTLRKTLVRAD-EIITSYESASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEA 674

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---VKLGSLV 539
           E G     +P  ++  G++VK +I++     RRI L+ + + T      L   + +G  V
Sbjct: 675 EAGYVESMKP--IFTPGRLVKVKIINVDVEKRRI-LASVKRSTSGEASKLSTVIDVGDQV 731

Query: 540 SGVVDVVTPNAVVVYVIAKGYS--------KGTIPTEHLADHLE-HATVMKSVIKPGYEF 590
           S  V V+  NA +   +    +        KG I  E LA   +     +K+ +K G E 
Sbjct: 732 SAFVTVIR-NAFIQLDLRHTNADPSSSEPVKGLISVEILAKKYDISPEALKNQLKAGDEV 790

Query: 591 DQLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVV 631
             L+V   +    LL   Y   +  Q Q+      IH  ++V
Sbjct: 791 KDLIVHTKDKEKELLMVGYKSASIPQEQMTGPIRFIHDKNLV 832



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            ED+    ++ G +K +T+    + +    DA V   + SD     PEK+F  G  V  RV
Sbjct: 549  EDIPIGALMNGTIKKLTATNLIVRIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARV 608

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
            L   P   ++ +TL+ +  R  +   I +  +  VG      I +VE   + I     + 
Sbjct: 609  LYTNPDRDQIVLTLRKTLVR--ADEIITSYESASVGTCAWAMITKVEEKFMLIEFFG-HT 665

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL   +E    +V++++ I+  G  VKVKI+ VD EKRRI   +K S
Sbjct: 666  KGLVPRAEAEAGYVESMKPIFTPGRLVKVKIINVDVEKRRILASVKRS 713



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 99/215 (46%), Gaps = 16/215 (7%)

Query: 493 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV------SEDDLVKLGSLVSGVVDVV 546
           S  Y VG   K R+    P    + L+  ++P+ V      SED  + +G+L++G +  +
Sbjct: 509 SGPYKVGTTHKARVTGVSPVDGVLQLT--LQPSVVEQAYMRSED--IPIGALMNGTIKKL 564

Query: 547 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 605
           T   ++V +  +G     +  +H +D ++HA   K    PG +   ++L  + +   ++L
Sbjct: 565 TATNLIVRI--EGGHDAVVWPDHYSD-VKHAHPEKK-FAPGAKVKARVLYTNPDRDQIVL 620

Query: 606 SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 665
           + + +L+  A ++ +        +     +  + E    + F G   G  PR++A  G  
Sbjct: 621 TLRKTLVR-ADEIITSYESASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEAEAGYV 679

Query: 666 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
             +   +  G+ V+  I++V+ E  RI  S+K+S 
Sbjct: 680 ESMKPIFTPGRLVKVKIINVDVEKRRILASVKRST 714


>gi|402589157|gb|EJW83089.1| hypothetical protein WUBG_05999 [Wuchereria bancrofti]
          Length = 598

 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 128/498 (25%), Positives = 228/498 (45%), Gaps = 46/498 (9%)

Query: 44  NEDNLLPTIFHVGQLVSCIVLQLDD--DKKEIGKRKIWLSLRLSLLYKGLSLE--TVQEG 99
           N    L  +F VGQ+++  V++  +  D ++ GK+  +  +    L     L    + +G
Sbjct: 100 NSSVTLEDVFRVGQMLAFKVIKGRETHDTQKKGKKSPYPIVSCDPLIVNFHLNPGALIDG 159

Query: 100 MVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSI 153
           +VL   V S+ED G I++ GL S    GFL   +L     + S +  +P LL      S 
Sbjct: 160 LVLNGVVGSVEDKGVIINLGLQSVELKGFLAERHLPSTFPKESLVKGQPLLLRIQNESSS 219

Query: 154 DRTRKVVYLSSDPD--TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 211
           ++  +V+ LS+ P+   +   V K LK   ++ L+PG ++         +GV ++     
Sbjct: 220 NKKTRVINLSAVPEMECLDDAVVKKLK---LNDLMPGTLLLVNPLQPTHSGVYVNIGNDI 276

Query: 212 TGTVDIFHLQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NR 265
            G V   HL        ++ND Y   K     ++F    S  + L  +P ++       R
Sbjct: 277 KGYVSRQHL-----PPRYRNDPYKCLKSFKTIVMFCQQNSNLLTLNGHPDIIAVSKFVKR 331

Query: 266 APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 325
               ++ +GDI  + +V  +D+   +  D+            ++  A +   K   +Y++
Sbjct: 332 TNFENIHIGDII-ECRVTSMDKSGNVNFDLVHEDERNSL---VAAFARKTKLKDSVEYEK 387

Query: 326 GSCVRVRILGFRHLEG-LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 384
           G+  + R+L F+ +E  L    LK    + +V +  D  PG+ V  K+ ++   G  V+ 
Sbjct: 388 GTVHKARVLSFKMVERILMVTTLKDILAQKMV-SIKDAVPGVKVTAKIESLLDKGLFVKI 446

Query: 385 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAI 442
              +    P  H+S+  + +  K F VG EL  R+L V    +R+ +T+K++L+ SK  I
Sbjct: 447 YNSIPGFIPKIHLSDKLVTRIDKHFAVGDELNCRILNVNKLKERLILTNKQSLISSKDTI 506

Query: 443 LSSYAEATDRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSMYHV 498
           + +YAE T  +IT G+I  I +H   G  + FY G++GF  P+    L    +      V
Sbjct: 507 IKNYAEVTTNIITTGYI--ISQHSSGGLVIGFYGGIRGFMLPKEAERLGTNVK------V 558

Query: 499 GQVVKCRIMSSIPASRRI 516
           G  V+ R++S  P   R+
Sbjct: 559 GLTVRVRVISVDPQRERL 576



 Score = 42.4 bits (98), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 615 AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 674
           AQ++ S    + P   V   + ++++ G FV+    + GF P+    D     + K + V
Sbjct: 415 AQKMVSIKDAV-PGVKVTAKIESLLDKGLFVKIYNSIPGFIPKIHLSDKLVTRIDKHFAV 473

Query: 675 GQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
           G  +   IL+VN    R+ L+ KQS  SS D 
Sbjct: 474 GDELNCRILNVNKLKERLILTNKQSLISSKDT 505



 Score = 40.8 bits (94), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 1225 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1284
            ++T  D   + +  I+D  P + V   ++++  KG F+ +   +   +   +LSD  V  
Sbjct: 407  VTTLKDILAQKMVSIKDAVPGVKVTAKIESLLDKGLFVKIYNSIPGFIPKIHLSDKLVTR 466

Query: 1285 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1344
             +K F +G  +  R+L+V  L +R+ +T K S   ++  + I N + +    I  G I  
Sbjct: 467  IDKHFAVGDELNCRILNVNKLKERLILTNKQS-LISSKDTIIKNYAEVTTNIITTGYIIS 525

Query: 1345 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
              S G  +      + G     E      + + T  + G  V+V+++ VD ++ R+
Sbjct: 526  QHSSGGLVIGFYGGIRGFMLPKE-----AERLGTNVKVGLTVRVRVISVDPQRERL 576


>gi|195573447|ref|XP_002104705.1| GD18301 [Drosophila simulans]
 gi|194200632|gb|EDX14208.1| GD18301 [Drosophila simulans]
          Length = 192

 Score =  107 bits (266), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 107/183 (58%), Gaps = 1/183 (0%)

Query: 1617 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQ 1675
            + AL   DP +++++++ + ++ ++      +L  ++ KFK   +VW    +      + 
Sbjct: 4    REALNCNDPLEIYISVVDILKKNKRKDRLSSVLTTVLNKFKTELRVWPVAAEAYFWLGKS 63

Query: 1676 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1735
            + V  ++QRAL +LP  +HI  I   A L  K+   D  +++ + +++ YPKR D+WS+Y
Sbjct: 64   DQVHNLLQRALRALPNQEHIPCIVSFAKLYAKHDNNDMAQTLLDDVVTSYPKRIDIWSVY 123

Query: 1736 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
            +D  I+ G +D  R + ERA+   L P KM+ ++KKYL+ E++ G +  +  VKQ+A ++
Sbjct: 124  VDMLIKAGLIDSARNVLERAVLQKLKPNKMQVIYKKYLQLEENHGTDATVAKVKQQAEQW 183

Query: 1796 VES 1798
            V++
Sbjct: 184  VKN 186


>gi|167385610|ref|XP_001737415.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165899785|gb|EDR26302.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 170

 Score =  105 bits (262), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 1/145 (0%)

Query: 1653 IKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1711
             KK K SCKV+ +  + +++  ++E  +  + +A  +L + K I      A LE+K G  
Sbjct: 23   FKKVKGSCKVYKKYCKFIMRNNREEENKNTISKAKTTLDKKKMISLEIHIARLEYKYGSV 82

Query: 1712 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771
            D+GRSMFE IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    K
Sbjct: 83   DKGRSMFEDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLNTKTMKTFLTK 142

Query: 1772 YLEYEKSVGEEERIEYVKQKAMEYV 1796
            YLE+E   G+E + E+V+  A  +V
Sbjct: 143  YLEFEIKYGDESKQEHVRDIAKSFV 167


>gi|302796338|ref|XP_002979931.1| hypothetical protein SELMODRAFT_419585 [Selaginella moellendorffii]
 gi|300152158|gb|EFJ18801.1| hypothetical protein SELMODRAFT_419585 [Selaginella moellendorffii]
          Length = 309

 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 80/114 (70%), Gaps = 5/114 (4%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V G+VKNVT KGCF++LS  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 160  VHGFVKNVTEKGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 219

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
             +E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++V 
Sbjct: 220  HIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLPESHVVA 268



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 46/191 (24%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
            V+I Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F+ RF +G     ++
Sbjct: 46   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCYI 105

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1146
             S+N E+K + L L P       KT D      + F  + D++G RI+++ +GVGG  VQ
Sbjct: 106  RSVNHERKQVDLSLHP-------KTSD------EQF-KKNDLLGRRITRVFAGVGGHTVQ 151

Query: 1147 ------------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQ------ 1176
                                    + P L  R+    L N  V +P   +  G+      
Sbjct: 152  GRWESLGKVHGFVKNVTEKGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRI 211

Query: 1177 --FDPLSGYDE 1185
               +PLSG+ E
Sbjct: 212  LSIEPLSGHIE 222


>gi|284044326|ref|YP_003394666.1| RNA binding S1 domain-containing protein [Conexibacter woesei DSM
            14684]
 gi|283948547|gb|ADB51291.1| RNA binding S1 domain protein [Conexibacter woesei DSM 14684]
          Length = 529

 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 186/384 (48%), Gaps = 53/384 (13%)

Query: 1022 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1081
            FEE DV     VTG+V ++D +  L+ I    K++  I  +     +  + +    +G+ 
Sbjct: 38   FEEGDV-----VTGHVVRIDKDEVLVDIG--YKSEGVIPSNELSIRKSVDPKDEVEMGEE 90

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
            V   VL+  KE +  RL+L   +        + +   ++     G+ V G + +++ G  
Sbjct: 91   VDALVLT--KEDQDGRLILSKKR-----ARFEKAWRRIEAAAESGEPVDGTVIEVVKG-- 141

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
            GL++ +G   +      +++ +   D   G               Q ++C+V+E++R+  
Sbjct: 142  GLIIDLGVRGFLPASLVDIRRVPHLDEYLG---------------QTIECRVIELNRS-- 184

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
               +V LS R+ L+     +   +             ++ L P MIV+G + N+   G F
Sbjct: 185  -RNNVVLSRRAVLEEQRREDRERI-------------LDRLQPGMIVEGTISNIVDFGAF 230

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            + L   +D  + +S LS  +V  P +   IG  V+ +VL ++   +R+ + LK    +T 
Sbjct: 231  VDLD-GIDGLIHISELSWSHVNHPSEILSIGDTVSVKVLDIDRDRQRISLGLK----QTQ 285

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1381
                   +   +VGD + G++ +V ++G F+ I +  + GL H+SEL++ HV+N   I +
Sbjct: 286  EDPWQRVVDTYNVGDELEGRVTKVVTFGAFVEILD-GVEGLVHISELAQHHVENPREIIQ 344

Query: 1382 AGEKVKVKILKVDKEKRRISLGMK 1405
              ++VKVKIL++D E+RR+SL +K
Sbjct: 345  PNDEVKVKILEIDSERRRLSLSIK 368



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++PGM+V+G +  +  FGA V    G+  L  +  +S   +  P +   +G  +  +VL 
Sbjct: 211 LQPGMIVEGTISNIVDFGAFVDL-DGIDGLIHISELSWSHVNHPSEILSIGDTVSVKVLD 269

Query: 422 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           +    +RI++  K+T       ++ +Y    D L   G +TK+   G FV   +GV+G  
Sbjct: 270 IDRDRQRISLGLKQTQEDPWQRVVDTY-NVGDEL--EGRVTKVVTFGAFVEILDGVEGLV 326

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL       P  +      VK +I+      RR++LS 
Sbjct: 327 HISELAQHHVENPREIIQPNDEVKVKILEIDSERRRLSLSI 367



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 151/392 (38%), Gaps = 67/392 (17%)

Query: 435 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 494
           +V +  A L+ + E     +  G + +I+K    V      +G  P +EL +    +P  
Sbjct: 27  IVPNYDATLTPFEEGD---VVTGHVVRIDKDEVLVDIGYKSEGVIPSNELSIRKSVDPKD 83

Query: 495 MYHVGQVVKCRIMSSIPASRRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPN 549
              +G+ V   +++      R+ LS     F     R+      + G  V G V  V   
Sbjct: 84  EVEMGEEVDALVLTKEDQDGRLILSKKRARFEKAWRRIEA--AAESGEPVDGTVIEVVKG 141

Query: 550 AVVVYVIAKGYSKGTIPTEHLADHLEH---ATVMKSVIKPGYEFDQLLVLDNESSNLLLS 606
            +++ +  +G+   ++       HL+     T+   VI+          L+   +N++LS
Sbjct: 142 GLIIDLGVRGFLPASLVDIRRVPHLDEYLGQTIECRVIE----------LNRSRNNVVLS 191

Query: 607 AKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 665
            +  L    ++        + P  +V G + NI++ G FV   G + G    S+      
Sbjct: 192 RRAVLEEQRREDRERILDRLQPGMIVEGTISNIVDFGAFVDLDG-IDGLIHISELSWSHV 250

Query: 666 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 725
              S+   +G +V   +LD++ +  RI+L LKQ+                          
Sbjct: 251 NHPSEILSIGDTVSVKVLDIDRDRQRISLGLKQT-------------------------- 284

Query: 726 KHNGSELKW---VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 782
                E  W   V+ + +G  +EG+V +   FG  V   +   V G +   +LA   VE+
Sbjct: 285 ----QEDPWQRVVDTYNVGDELEGRVTKVVTFGAFVEILDG--VEGLVHISELAQHHVEN 338

Query: 783 -------GSVIQAAILDVAKAERLVDLSLKTV 807
                     ++  IL++    R + LS+K V
Sbjct: 339 PREIIQPNDEVKVKILEIDSERRRLSLSIKRV 370


>gi|414883929|tpg|DAA59943.1| TPA: hypothetical protein ZEAMMB73_646840 [Zea mays]
          Length = 208

 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 76/106 (71%), Gaps = 10/106 (9%)

Query: 1474 LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1533
            LE N+ +   ++ NG   N           +K+++  KK+ +++RE EI A EER L++D
Sbjct: 50   LEDNISNTCLEIANGTEANA----------KKSDKQLKKEARKQRELEISAMEERALQED 99

Query: 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1579
             P+TPD+FE+LVRSSPNSSF+WIKYMA +L +ADV+KAR++AER++
Sbjct: 100  IPQTPDDFEKLVRSSPNSSFIWIKYMATLLDLADVKKARAVAERSV 145


>gi|171910224|ref|ZP_02925694.1| 30S ribosomal protein S1 [Verrucomicrobium spinosum DSM 4136]
          Length = 557

 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 220/470 (46%), Gaps = 98/470 (20%)

Query: 959  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1018
            I +VND++ N+V            ++ R + ++ + + ++ FL   S+KP          
Sbjct: 149  IVKVNDERKNIV------------LSRREVIEAERAEQRQKFL--ESVKP---------- 184

Query: 1019 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQR 1074
                       G +V G V  +  ++ +      +   L I D  +     PSEL     
Sbjct: 185  -----------GDKVEGIVKNI-TDFGVFVDLNGMDGLLHITDMTWGRLNHPSEL----- 227

Query: 1075 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGR 1132
               IG+ +   +L +N+EK+ + L L+  Q          SN  ++++     G  V G 
Sbjct: 228  -VAIGQKLNVQILEVNREKERVSLGLKQMQ----------SNPWESIENRYPVGQRVHGT 276

Query: 1133 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCK 1192
            ++K+++   G  V++   + G +H +EL           + +    P      GQ V  +
Sbjct: 277  VTKLVAY--GAFVEVEEGVEGLIHVSELS----------WTKRIARPSDVLTVGQKVDAQ 324

Query: 1193 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1252
            VL I++  R    + L +R  LD    TN  D   ++D         E       ++G V
Sbjct: 325  VLGINKEER---KISLGVRQ-LD----TNPWD---NID---------ERFPIGTKMKGKV 364

Query: 1253 KNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1311
            +N+T+ G F+ L   +D  + +S+LS    +  P +    G+ V   +L ++  ++R+ +
Sbjct: 365  RNLTAYGAFVELEEGIDGMIHVSDLSWTRKINHPSEVLKKGQEVEATILEIDKANQRISL 424

Query: 1312 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1371
             +K  +    S+ +    +   VGD+V G++ ++ S+G F+ +E+ ++ GL H+S+LSED
Sbjct: 425  GIKQLEGDPWSEID----TRFKVGDLVKGRVAKIASFGAFVELED-DIDGLVHISQLSED 479

Query: 1372 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1421
            HV+ ++ +   G++V+ +++KVDK +RRI L +K+  +  D ++L+  S+
Sbjct: 480  HVNRVKDVLNVGDEVEARVIKVDKVERRIGLSVKAVNY--DEESLKKESQ 527



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 172/414 (41%), Gaps = 72/414 (17%)

Query: 588 YEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
           YEF +++ +++E  N++LS +  +    A+Q       + P   V G V NI + G FV 
Sbjct: 145 YEF-KIVKVNDERKNIVLSRREVIEAERAEQRQKFLESVKPGDKVEGIVKNITDFGVFVD 203

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
             G + G    +    G+    S+   +GQ +   IL+VN E  R++L LKQ        
Sbjct: 204 LNG-MDGLLHITDMTWGRLNHPSELVAIGQKLNVQILEVNREKERVSLGLKQ-------- 254

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
                          +QS+     E +    + +G  + G V +   +G  V  EE   V
Sbjct: 255 ---------------MQSNPWESIENR----YPVGQRVHGTVTKLVAYGAFVEVEE--GV 293

Query: 767 YGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 818
            G I   +L+           +  G  + A +L + K ER + L +        R+ ++N
Sbjct: 294 EGLIHVSELSWTKRIARPSDVLTVGQKVDAQVLGINKEERKISLGV--------RQLDTN 345

Query: 819 RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYN-TQKF 876
                 +R    +K  G  + + A    V          E    I G   VSD + T+K 
Sbjct: 346 PWDNIDERFPIGTKMKGKVRNLTAYGAFV----------ELEEGIDGMIHVSDLSWTRKI 395

Query: 877 --PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 934
             P +    GQ V AT++ +  ++   R+ L +K +          ++  + + VG LV+
Sbjct: 396 NHPSEVLKKGQEVEATILEIDKANQ--RISLGIKQL-----EGDPWSEIDTRFKVGDLVK 448

Query: 935 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
             + +I      ++      G +HI+++++D  N V+++ +   +G  V AR+I
Sbjct: 449 GRVAKIASFGAFVELEDDIDGLVHISQLSEDHVNRVKDVLN---VGDEVEARVI 499



 Score = 45.8 bits (107), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 156/367 (42%), Gaps = 45/367 (12%)

Query: 187 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN-TFPTTNWKNDYNQ-HKKVNARIL 244
           PG  V   V++I + GV +       G   + H+ + T+   N  ++     +K+N +IL
Sbjct: 184 PGDKVEGIVKNITDFGVFVDL----NGMDGLLHITDMTWGRLNHPSELVAIGQKLNVQIL 239

Query: 245 FVDPTSRAVGLTL-----NPY-LLHNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDI 295
            V+     V L L     NP+  + NR P     H  V  +      V V+ G+  L+ +
Sbjct: 240 EVNREKERVSLGLKQMQSNPWESIENRYPVGQRVHGTVTKLVAYGAFVEVEEGVEGLIHV 299

Query: 296 P----STPVSTPAYV-TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 350
                +  ++ P+ V T+    + +V  + K+ ++ S      LG R L+         +
Sbjct: 300 SELSWTKRIARPSDVLTVGQKVDAQVLGINKEERKIS------LGVRQLD--------TN 345

Query: 351 AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKF 409
            ++ +         G  +KGKV  + ++GA V+   G+  +  +  +S   +I  P +  
Sbjct: 346 PWDNI---DERFPIGTKMKGKVRNLTAYGAFVELEEGIDGMIHVSDLSWTRKINHPSEVL 402

Query: 410 KVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 467
           K G E+   +L +   ++RI++  K+ L     + + +  +  D  +  G + KI   G 
Sbjct: 403 KKGQEVEATILEIDKANQRISLGIKQ-LEGDPWSEIDTRFKVGD--LVKGRVAKIASFGA 459

Query: 468 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 527
           FV   + + G    S+L  D       + +VG  V+ R++      RRI LS  +K    
Sbjct: 460 FVELEDDIDGLVHISQLSEDHVNRVKDVLNVGDEVEARVIKVDKVERRIGLS--VKAVNY 517

Query: 528 SEDDLVK 534
            E+ L K
Sbjct: 518 DEESLKK 524


>gi|223937065|ref|ZP_03628973.1| ribosomal protein S1 [bacterium Ellin514]
 gi|223894346|gb|EEF60799.1| ribosomal protein S1 [bacterium Ellin514]
          Length = 553

 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 162/339 (47%), Gaps = 54/339 (15%)

Query: 1076 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1135
              +G+ +   VL INKEK+ + L       G+  K  +   DN++     G  V G++  
Sbjct: 228  LKVGQDIDVVVLDINKEKERVSL-------GLKQKLAN-PWDNIEAKYPIGAKVKGKVVN 279

Query: 1136 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1195
            ++    G  V++ P + G VH TEL           + +    P       Q ++  VL 
Sbjct: 280  LVPY--GAFVELEPGVEGLVHVTEL----------SWTKRIAKPADVLKADQEIEAVVLG 327

Query: 1196 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1255
            I+R  +    + L +R        TN  D + D   PG              V+G ++N+
Sbjct: 328  INREEQ---KISLGVRQL-----ETNPWDKAMDKYPPGTR------------VKGKIRNL 367

Query: 1256 TSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            TS G FI L   LD  + +S++S    +  P +    G  V   VL ++  ++R+ V +K
Sbjct: 368  TSYGAFIELEEGLDGMIHVSDISWTRKINHPSEVLKKGDEVEAVVLEIDKANQRIAVGVK 427

Query: 1315 TSDSRTASQSEINNLSNL----HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
                    Q  ++  SN+     VGD+V GQ+ ++ S+G F+ +++  + GL H+S++SE
Sbjct: 428  --------QLAVDPWSNIDQFYKVGDLVTGQVTKLASFGAFVGLQH-EIDGLVHISQVSE 478

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
            + VD I+ + + G++V  +++K+DK  RRI L +K++ +
Sbjct: 479  ERVDKIKNVLKVGQEVTARVIKIDKSDRRIGLSIKAASY 517



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 139/297 (46%), Gaps = 54/297 (18%)

Query: 1117 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYD 1173
            D + T  +EG  + G++  ++ G  GL+V IG   +    ++  T  KN           
Sbjct: 90   DKILTICNEGGTITGKVKAVVKG--GLLVNIGVEAFLPASQIDITTTKN----------- 136

Query: 1174 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1233
                  L+ Y  G   + KV++I++  +   ++ LS R  ++   +   S L        
Sbjct: 137  ------LASY-VGNSYEFKVVKINQERQ---NIVLSRRELIEQERNDRRSKL-------- 178

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
                 + +++P  I +G VKN+T  G FI L+  +D  + ++++S G +  P     +G+
Sbjct: 179  -----LSEMTPGDIRKGTVKNITDFGAFIDLN-GIDGLLHITDMSWGRIAHPSDILKVGQ 232

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH----VGDIVIGQIKRVESYG 1349
             +   VL +    +RV + LK        Q   N   N+     +G  V G++  +  YG
Sbjct: 233  DIDVVVLDINKEKERVSLGLK--------QKLANPWDNIEAKYPIGAKVKGKVVNLVPYG 284

Query: 1350 LFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             F+ +E   + GL HV+ELS    +     + +A ++++  +L +++E+++ISLG++
Sbjct: 285  AFVELE-PGVEGLVHVTELSWTKRIAKPADVLKADQEIEAVVLGINREEQKISLGVR 340



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 105/478 (21%), Positives = 201/478 (42%), Gaps = 85/478 (17%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 595
           G  ++G V  V    ++V +  + +    +P   +   +     + S +   YEF +++ 
Sbjct: 99  GGTITGKVKAVVKGGLLVNIGVEAF----LPASQI--DITTTKNLASYVGNSYEF-KVVK 151

Query: 596 LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
           ++ E  N++LS +  +        S   S + P  +  G V NI + G F+   G + G 
Sbjct: 152 INQERQNIVLSRRELIEQERNDRRSKLLSEMTPGDIRKGTVKNITDFGAFIDLNG-IDGL 210

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 714
              +    G+ A  S    VGQ +   +LD+N E  R++L LKQ   +  D         
Sbjct: 211 LHITDMSWGRIAHPSDILKVGQDIDVVVLDINKEKERVSLGLKQKLANPWDN-------- 262

Query: 715 LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 774
           +E K                   + IG+ ++GKV     +G  V  E    V G +   +
Sbjct: 263 IEAK-------------------YPIGAKVKGKVVNLVPYGAFVELE--PGVEGLVHVTE 301

Query: 775 LA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK-- 824
           L+           +++   I+A +L + + E+ + L ++ +      E N   +A  K  
Sbjct: 302 LSWTKRIAKPADVLKADQEIEAVVLGINREEQKISLGVRQL------ETNPWDKAMDKYP 355

Query: 825 --KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKF--PQK 879
              R +   ++L    +  A +E+  E  L           G   VSD + T+K   P +
Sbjct: 356 PGTRVKGKIRNL---TSYGAFIEL--EEGL----------DGMIHVSDISWTRKINHPSE 400

Query: 880 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 939
               G  V A V+ +  ++   R+ + +K ++    S+  +      Y VG LV  ++T+
Sbjct: 401 VLKKGDEVEAVVLEIDKANQ--RIAVGVKQLAVDPWSNIDQF-----YKVGDLVTGQVTK 453

Query: 940 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 997
           +      +       G +HI++V++++ + ++N+    K+GQ VTAR+I K +K D +
Sbjct: 454 LASFGAFVGLQHEIDGLVHISQVSEERVDKIKNV---LKVGQEVTARVI-KIDKSDRR 507



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 155/382 (40%), Gaps = 43/382 (11%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S++ PG + KG V  +  FGA +    G+  L  +  MS   I  P    KVG ++   V
Sbjct: 180 SEMTPGDIRKGTVKNITDFGAFIDL-NGIDGLLHITDMSWGRIAHPSDILKVGQDIDVVV 238

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L +  + +R+++  K+ L      I + Y          G +  +  +G FV    GV+G
Sbjct: 239 LDINKEKERVSLGLKQKLANPWDNIEAKYPIGAK---VKGKVVNLVPYGAFVELEPGVEG 295

Query: 478 FAPRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 535
               +EL       +P+ +    Q ++  ++      ++I+L      T   +  + K  
Sbjct: 296 LVHVTELSWTKRIAKPADVLKADQEIEAVVLGINREEQKISLGVRQLETNPWDKAMDKYP 355

Query: 536 -GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYE 589
            G+ V G +  +T     + +      +G     H++D      + H +    V+K G E
Sbjct: 356 PGTRVKGKIRNLTSYGAFIEL-----EEGLDGMIHVSDISWTRKINHPS---EVLKKGDE 407

Query: 590 FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP----NSVVHGYVCNIIETGCF 644
             + +VL+ + +N  ++         +QL  D  S+I        +V G V  +   G F
Sbjct: 408 V-EAVVLEIDKANQRIAV------GVKQLAVDPWSNIDQFYKVGDLVTGQVTKLASFGAF 460

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
           V     + G    S+  + +   +     VGQ V + ++ ++    RI LS+K       
Sbjct: 461 VGLQHEIDGLVHISQVSEERVDKIKNVLKVGQEVTARVIKIDKSDRRIGLSIKA------ 514

Query: 705 DASFMQEHFLLEEKIAMLQSSK 726
            AS+  E    E+  AML S K
Sbjct: 515 -ASYSPEQLKAEQ--AMLDSLK 533



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 9/113 (7%)

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
            LS+R  +  + +D R+        LS +  GDI  G +K +  +G FI +   +  GL H
Sbjct: 161  LSRRELIEQERNDRRSKL------LSEMTPGDIRKGTVKNITDFGAFIDLNGID--GLLH 212

Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            ++++S   + +   I + G+ + V +L ++KEK R+SLG+K     N  DN++
Sbjct: 213  ITDMSWGRIAHPSDILKVGQDIDVVVLDINKEKERVSLGLKQK-LANPWDNIE 264


>gi|195573449|ref|XP_002104706.1| GD18300 [Drosophila simulans]
 gi|194200633|gb|EDX14209.1| GD18300 [Drosophila simulans]
          Length = 1128

 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 148/622 (23%), Positives = 266/622 (42%), Gaps = 63/622 (10%)

Query: 1   MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 60
           M + GVV E+    L  CL       AR   A+        + +E + L  +F VG++V 
Sbjct: 75  MLVMGVVKELTATALHYCL-------ARPDAAMSG------DTSEYHDLTELFQVGRIVY 121

Query: 61  CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 120
              ++ +  K + G+  + LSL+ + ++  L  +++++G + +  V    +HGY++  G+
Sbjct: 122 GKAIKTE--KLDTGRVSLLLSLKPADVHGSLHHKSIKKGFIFSGAVAEALEHGYVIESGV 179

Query: 121 PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVVYLSSDPDTVSKCVTKDLKG 179
                F+P    A+   +     L ++ V     + T   V +  D     +   K    
Sbjct: 180 QGLQAFVPCEKPAQKLHVGQLAFLKVKTVHHDTHQSTCTCVQVEQD-----QLRIKSQNE 234

Query: 180 ISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQNTFPTTNWKNDYNQHKK 238
            ++D ++PG +V  +V   L++G+  S +   F+  V+  HL N   T    + Y  ++ 
Sbjct: 235 TNLDYILPGSIVRFKVAKHLKDGLKGSIMNESFSAYVNEHHLANALDTL---DAYELNED 291

Query: 239 VNARILFVDPTSRAVGLTLNPYLLHNRAPPSH----------VKVGDIYDQSKVVRVDRG 288
            NAR+L+V P ++ V LTLN  +    A              ++VG + +++KV+R+  G
Sbjct: 292 YNARVLYVMPLTKLVYLTLNLDIKTGAAVAKDDDEEEQEVEPIQVGSVVEKAKVLRLGSG 351

Query: 289 LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRILGFRHLEGLATGI 346
            G++L +        +Y +I    +    K E   KY   +  +VRILG+  +E L    
Sbjct: 352 -GVVLLLNKKLKGIISYGSIRGNFKGNYDKDEVLSKYGRKTKHKVRILGYDVIESLYYCS 410

Query: 347 LKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 404
              +     +F   D+  G +V            G  V+  G V  +     + +F +  
Sbjct: 411 DDPNVVNEKLFCLEDINAGDLVTAKIFKKDDKIKGWSVRI-GKVNGI-----LEQFYLA- 463

Query: 405 PGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 462
           P  ++ VG  L  RVL V ++R    V+++   +   + IL+ YA A    +  G + + 
Sbjct: 464 PNVRYDVGQSLKCRVLEVNAERKICYVSNRAEYLGKGMKILTDYASAHVGNVYMGTVVRC 523

Query: 463 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
           E     V+F NG++G   R  L      E SS +  GQ  K RI++      +I L+   
Sbjct: 524 EDTYVLVKFGNGIKGVLHRQNLK-----ENSSFFE-GQTTKFRILTR--NKDQITLTLPE 575

Query: 523 KPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIAKGYSK-----GTIPTEHLADHLEH 576
              ++ E   V++ + +   ++V +T  A        G  K     G IP   L+DHLE 
Sbjct: 576 DKFQLGEICPVEITNALDAGLEVKITFAAEDDEEDEDGNPKLEEFVGLIPLRLLSDHLEL 635

Query: 577 ATVMKSVIKPGYEFDQLLVLDN 598
                 V   G   D   ++ N
Sbjct: 636 LHAQMRVHPAGSYTDAACIMQN 657


>gi|148658063|ref|YP_001278268.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570173|gb|ABQ92318.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
          Length = 514

 Score = 99.8 bits (247), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 101/185 (54%), Gaps = 11/185 (5%)

Query: 1230 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1289
            +TPG+   +++DL+P M ++G V ++   G F+ +    D  V +S +SD  +ESP    
Sbjct: 128  ETPGRP-RRVKDLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLV 186

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSD-------SRTASQSEIN--NLSNLHVGDIVIG 1340
             IG  V  RV SVEP  +R+ +T++T +        R   + E++   L+ L VGD V G
Sbjct: 187  KIGDTVKVRVKSVEPDGRRISLTMRTKERSAEPRSGRGKKKPEVDYEKLAALRVGDNVEG 246

Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
             +  +  +G+F+ I      GL HVSEL+E  V+  E + + G+    K+L+VD    RI
Sbjct: 247  TVTGMAPFGVFVDI-GVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAAGARI 305

Query: 1401 SLGMK 1405
            SL ++
Sbjct: 306  SLSLR 310



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 113/262 (43%), Gaps = 34/262 (12%)

Query: 456 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515
            G +T I  +G FV    G  G    SE+       PS +  +G  VK R+ S  P  RR
Sbjct: 146 EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRR 205

Query: 516 INLSFMMKP----------TRVSEDDLVKLGSL-----VSGVVDVVTPNAVVVYVIAKGY 560
           I+L+   K            +  E D  KL +L     V G V  + P  V V +   G 
Sbjct: 206 ISLTMRTKERSAEPRSGRGKKKPEVDYEKLAALRVGDNVEGTVTGMAPFGVFVDI---GV 262

Query: 561 SK-GTIPTEHLAD-HLEHATVMKSVIKPG--YEFDQLLVLDNESSNLLLSAKYSLINSAQ 616
            K G +    LA+  +E A   + V++ G  Y F ++L +D   + + LS + +     Q
Sbjct: 263 GKDGLVHVSELAEGRVEKA---EDVVQVGQTYTF-KVLEVDAAGARISLSLRRA--QRGQ 316

Query: 617 QLPSDASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           +L      +    ++ G +  +   G FV   +GR  G    S+  +   A +     VG
Sbjct: 317 KL----QQLEKGQILEGTISGLAPFGAFVDIGVGR-DGLVHISELSNTHVARVEDVVKVG 371

Query: 676 QSVRSNILDVNSETGRITLSLK 697
             V+  +LDV+ ++ RI+LSL+
Sbjct: 372 DRVQVRVLDVDPQSKRISLSLR 393



 Score = 41.6 bits (96), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 25/213 (11%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           D+ PGM ++G+V ++  +G  V    G   L  +  MS+  I  P    K+G  +  RV 
Sbjct: 138 DLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVK 197

Query: 421 GVK--SKRITVT---------------HKKTLVK-SKLAILSSYAEATDRLITHGWITKI 462
            V+   +RI++T                KK  V   KLA L       D +   G +T +
Sbjct: 198 SVEPDGRRISLTMRTKERSAEPRSGRGKKKPEVDYEKLAAL----RVGDNV--EGTVTGM 251

Query: 463 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
              G FV    G  G    SEL      +   +  VGQ    +++    A  RI+LS + 
Sbjct: 252 APFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAAGARISLS-LR 310

Query: 523 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 555
           +  R  +   ++ G ++ G +  + P    V +
Sbjct: 311 RAQRGQKLQQLEKGQILEGTISGLAPFGAFVDI 343


>gi|187734759|ref|YP_001876871.1| 30S ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835]
 gi|187424811|gb|ACD04090.1| ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835]
          Length = 562

 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 215/476 (45%), Gaps = 98/476 (20%)

Query: 959  ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1018
            I +VNDD+ N+V            ++ R + ++ + D ++ FL          TV E   
Sbjct: 150  IVKVNDDRKNIV------------LSRREVIEAERADQRQRFL---------ETVKE--- 185

Query: 1019 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQR 1074
                       G +V G V  + +  A + + R +   L I D ++     PSE+     
Sbjct: 186  -----------GDKVEGIVKNITDFGAFVDL-RGMDGLLHITDMSWGRVNHPSEM----- 228

Query: 1075 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1134
              HIG+++   +L +++EK+ + L L+   D   +   DI         H    V GR++
Sbjct: 229  -LHIGQSLEVVILEVDREKERVSLGLKQMTD---NPWADIER-KYPINSH----VKGRVT 279

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNIC-VSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            K+L    G  V++   + G VH +EL  +  ++ P    D  + D        Q ++  V
Sbjct: 280  KLLPY--GAFVELEKGVEGLVHVSELSWVKRITRP---SDVLKLD--------QEIEAVV 326

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            L IS   +    + L +R                  D P   +E         +++G V+
Sbjct: 327  LSISVKEQ---KISLGVRQL---------------EDNPWADIES--RFPIGTVIKGQVR 366

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1312
            N+T  G F+ L   +D  + +S++S    +  P +    G  V   VL ++   +RV + 
Sbjct: 367  NLTPYGAFVGLEEGIDGMIHVSDMSWTRKINHPSEVLKKGDEVEAIVLEIKKEDQRVSLG 426

Query: 1313 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
            +K  +S       IN+     VGD+V GQ+ ++ S+G F+ ++  ++ GL H+S+LSEDH
Sbjct: 427  IKQLES--DPWESIND--RFKVGDMVTGQVAKIASFGAFVNLDG-DIDGLIHISQLSEDH 481

Query: 1373 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAI 1428
            V+ ++ + + G+++  +++KVD  +RRI L +K+  +    D  Q+  E  S EA+
Sbjct: 482  VERVKDVIKVGDEITARVIKVDSIERRIGLSIKAVNY----DTEQLRRETASFEAL 533



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 140/352 (39%), Gaps = 36/352 (10%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           VK G  V+G V  +  FGA V   G +  L  +  MS   +  P +   +G  L   +L 
Sbjct: 183 VKEGDKVEGIVKNITDFGAFVDLRG-MDGLLHITDMSWGRVNHPSEMLHIGQSLEVVILE 241

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V  + +R+++  K+        I   Y   +      G +TK+  +G FV    GV+G  
Sbjct: 242 VDREKERVSLGLKQMTDNPWADIERKYPINSH---VKGRVTKLLPYGAFVELEKGVEGLV 298

Query: 480 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 536
             SEL  +     PS +  + Q ++  ++S     ++I+L           D      +G
Sbjct: 299 HVSELSWVKRITRPSDVLKLDQEIEAVVLSISVKEQKISLGVRQLEDNPWADIESRFPIG 358

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFD 591
           +++ G V  +TP    V     G  +G     H++D      + H +    V+K G E +
Sbjct: 359 TVIKGQVRNLTPYGAFV-----GLEEGIDGMIHVSDMSWTRKINHPS---EVLKKGDEVE 410

Query: 592 QLLV-LDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCFV 645
            +++ +  E   + L  K        QL SD             +V G V  I   G FV
Sbjct: 411 AIVLEIKKEDQRVSLGIK--------QLESDPWESINDRFKVGDMVTGQVAKIASFGAFV 462

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
              G + G    S+  +     +     VG  + + ++ V+S   RI LS+K
Sbjct: 463 NLDGDIDGLIHISQLSEDHVERVKDVIKVGDEITARVIKVDSIERRIGLSIK 514



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 152/351 (43%), Gaps = 68/351 (19%)

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1125
            P +L E+     +GK     ++ +N ++K + L  R     I  +  D     ++T + E
Sbjct: 135  PRDLNEY-----VGKVYEFKIVKVNDDRKNIVLSRREV---IEAERADQRQRFLET-VKE 185

Query: 1126 GDIVGGRISKI--------LSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQ 1176
            GD V G +  I        L G+ GL+  I    +GRV H +E+ +I             
Sbjct: 186  GDKVEGIVKNITDFGAFVDLRGMDGLL-HITDMSWGRVNHPSEMLHI------------- 231

Query: 1177 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1236
                     GQ ++  +LE+ R       V L L+                  D P   +
Sbjct: 232  ---------GQSLEVVILEVDREKE---RVSLGLKQM---------------TDNPWADI 264

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLV 1295
            E+      N  V+G V  +   G F+ L + ++  V +S LS    +  P     + + +
Sbjct: 265  ER--KYPINSHVKGRVTKLLPYGAFVELEKGVEGLVHVSELSWVKRITRPSDVLKLDQEI 322

Query: 1296 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
               VLS+    +++ + ++  +    +  E    S   +G ++ GQ++ +  YG F+ +E
Sbjct: 323  EAVVLSISVKEQKISLGVRQLEDNPWADIE----SRFPIGTVIKGQVRNLTPYGAFVGLE 378

Query: 1356 NTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
               + G+ HVS++S    +++   + + G++V+  +L++ KE +R+SLG+K
Sbjct: 379  E-GIDGMIHVSDMSWTRKINHPSEVLKKGDEVEAIVLEIKKEDQRVSLGIK 428



 Score = 44.3 bits (103), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 165/412 (40%), Gaps = 68/412 (16%)

Query: 588 YEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
           YEF +++ ++++  N++LS +  +    A Q       +     V G V NI + G FV 
Sbjct: 146 YEF-KIVKVNDDRKNIVLSRREVIEAERADQRQRFLETVKEGDKVEGIVKNITDFGAFVD 204

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
             G + G    +    G+    S+  ++GQS+   IL+V+ E  R++L LKQ     TD 
Sbjct: 205 LRG-MDGLLHITDMSWGRVNHPSEMLHIGQSLEVVILEVDREKERVSLGLKQ----MTDN 259

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE---- 762
            +      +E K                   + I S ++G+V +   +G  V  E+    
Sbjct: 260 PWAD----IERK-------------------YPINSHVKGRVTKLLPYGAFVELEKGVEG 296

Query: 763 --HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 820
             H     ++         ++    I+A +L ++  E+ + L +        R+   N  
Sbjct: 297 LVHVSELSWVKRITRPSDVLKLDQEIEAVVLSISVKEQKISLGV--------RQLEDNPW 348

Query: 821 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKF--P 877
           A  + R         +   +   V  +      + L E     G   VSD + T+K   P
Sbjct: 349 ADIESR-------FPIGTVIKGQVRNLTPYGAFVGLEEGID--GMIHVSDMSWTRKINHP 399

Query: 878 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI-SETETSSSKRAKKKSSYDVGSLVQAE 936
            +    G  V A V+ +       R+ L +K + S+   S + R K      VG +V  +
Sbjct: 400 SEVLKKGDEVEAIVLEIKKEDQ--RVSLGIKQLESDPWESINDRFK------VGDMVTGQ 451

Query: 937 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
           + +I      +       G IHI+++++D    VE +    K+G  +TAR+I
Sbjct: 452 VAKIASFGAFVNLDGDIDGLIHISQLSEDH---VERVKDVIKVGDEITARVI 500



 Score = 43.9 bits (102), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 172/401 (42%), Gaps = 49/401 (12%)

Query: 54  HVGQLVSCIVLQLDDDKKEI--GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 111
           +VG++    +++++DD+K I   +R++  + R     +   LETV+EG  +   VK+I D
Sbjct: 141 YVGKVYEFKIVKVNDDRKNIVLSRREVIEAERAD--QRQRFLETVKEGDKVEGIVKNITD 198

Query: 112 HGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 167
            G  +   L    G L   +++     +    +  G  L+ V+  +DR ++ V L     
Sbjct: 199 FGAFVD--LRGMDGLLHITDMSWGRVNHPSEMLHIGQSLEVVILEVDREKERVSLGLKQM 256

Query: 168 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 227
           T +     + K   I+  V G     RV  +L  G  +       G V +  L      T
Sbjct: 257 TDNPWADIERK-YPINSHVKG-----RVTKLLPYGAFVELEKGVEGLVHVSELSWVKRIT 310

Query: 228 NWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHVKVGDIYDQS- 280
              +     +++ A +L +    + + L +     NP+  + +R P   V  G + + + 
Sbjct: 311 RPSDVLKLDQEIEAVVLSISVKEQKISLGVRQLEDNPWADIESRFPIGTVIKGQVRNLTP 370

Query: 281 --KVVRVDRGLGLLLDIP----STPVSTPAYV-TISDVAEEEVRKLEKKYKEGSCVRVRI 333
               V ++ G+  ++ +     +  ++ P+ V    D  E  V +++K+ +  S      
Sbjct: 371 YGAFVGLEEGIDGMIHVSDMSWTRKINHPSEVLKKGDEVEAIVLEIKKEDQRVS------ 424

Query: 334 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 393
           LG + LE        +  +E +   +   K G +V G+V  + SFGA V   G +  L  
Sbjct: 425 LGIKQLE--------SDPWESI---NDRFKVGDMVTGQVAKIASFGAFVNLDGDIDGLIH 473

Query: 394 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHK 432
           +  +SE  + +     KVG E+  RV+ V S  +RI ++ K
Sbjct: 474 ISQLSEDHVERVKDVIKVGDEITARVIKVDSIERRIGLSIK 514


>gi|291456496|ref|ZP_06595886.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
 gi|384197191|ref|YP_005582935.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
 gi|417942230|ref|ZP_12585505.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
 gi|291381773|gb|EFE89291.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
 gi|333109696|gb|AEF26712.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
 gi|339478978|gb|ABE95439.1| SSU ribosomal protein S1P [Bifidobacterium breve UCC2003]
 gi|376167330|gb|EHS86177.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
          Length = 491

 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 191/417 (45%), Gaps = 66/417 (15%)

Query: 1003 ELSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH---- 1052
            E +I+ + + +++IG++  F +  D +I     G  V G V K+D++  LL I       
Sbjct: 3    ENNIEVTKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGV 62

Query: 1053 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1112
            + ++   +    +P E+ E      +G  +    L + KE K  RL+L   +        
Sbjct: 63   IPSRELSIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWG 114

Query: 1113 DISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1171
            DI        I E D +V G + + + G  GL+V IG   +      E++ +    P  G
Sbjct: 115  DIEK------IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG 166

Query: 1172 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1231
                           Q +K K+LE+ +      +V LS R  L+   S            
Sbjct: 167  ---------------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------ 202

Query: 1232 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1291
                   +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +
Sbjct: 203  -------LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKV 254

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGL 1350
            G  V   VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+
Sbjct: 255  GDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGV 309

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            FI++E+  + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 310  FISVED-GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|212716121|ref|ZP_03324249.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
            16992 = JCM 1194]
 gi|212661488|gb|EEB22063.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
            16992 = JCM 1194]
          Length = 491

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 188/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V KVD++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFGDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QTIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQTIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFGDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQTIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|225351875|ref|ZP_03742898.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
            pseudocatenulatum DSM 20438 = JCM 1200]
 gi|225157122|gb|EEG70461.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
            pseudocatenulatum DSM 20438 = JCM 1200]
          Length = 491

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 188/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V KVD++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QTIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQTIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQTIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|206896344|ref|YP_002247530.1| 30S ribosomal protein S1 [Coprothermobacter proteolyticus DSM 5265]
 gi|206738961|gb|ACI18039.1| ribosomal protein S1 [Coprothermobacter proteolyticus DSM 5265]
          Length = 559

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 135/567 (23%), Positives = 235/567 (41%), Gaps = 71/567 (12%)

Query: 290 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG---SCVRVRILGFRHLEGLATGI 346
           GL LDI S      A++ + +   E    L ++ +EG   + V V +      +G  +  
Sbjct: 34  GLWLDIAS---KYDAFLPLDECTSE----LARQVQEGNVPTSVEVVVTRTNDDKGYISVS 86

Query: 347 LKASAFEGLVFTHSDV----KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 402
            K +A+  L     DV    K G   K K +  D  G  V    G+    P   + E   
Sbjct: 87  QKRAAYRKL---WKDVEEWEKSGESRKVKAVGADDKGVFVDLGAGILGYVPASQL-EIRF 142

Query: 403 VKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVK-SKLAILSSYAEATDRLITHGWI 459
           V+  KK+ VG  L  ++L V  KR  I +T ++ L +  K     ++    D  I  G +
Sbjct: 143 VRDTKKY-VGRSLRVKILRVNRKRNQIILTQRQVLEEEQKERAEKAWLRLKDSDIVRGHV 201

Query: 460 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           ++I   G FV   +G++GF P+ EL   P    + ++  G VV+ +++S     + + LS
Sbjct: 202 SRITDEGIFVDLGDGIEGFVPKDELDWRPIKNIAKVFRRGDVVRAKVLSVDEEKKEMVLS 261

Query: 520 FMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 576
             +    P ++  +    +G +VSG V       +++ V       G +P + ++   + 
Sbjct: 262 IRLATPNPWQLFAEKH-NVGDVVSGRVLRYLRGGLLLLV---DRVTGLVPAQEVS--WKR 315

Query: 577 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 635
              ++ + K G     ++L  D E+ +L+LS K +L +  + +  D       S   G V
Sbjct: 316 GAKVEDLYKIGDHVKAKILRFDPEAQDLILSVKEALGDPWENVERD---FPVGSKAEGTV 372

Query: 636 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
            NI + G FV     + G  PR      +  D+++   +G  V   +L +N    +ITLS
Sbjct: 373 VNITDFGVFVELAPGIEGLVPRRYVSWKRFKDINEVVNIGDQVEVVVLGINIVDRKITLS 432

Query: 696 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 755
           ++ +                EE +  +Q                 G ++ GKV      G
Sbjct: 433 MRDTRPDP-----------WEEVVKNIQP----------------GQLVRGKVVTIIPQG 465

Query: 756 VVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVF 808
           V V   +   V GFI   QL+          V  G  I A ++ + +  R + LS+K + 
Sbjct: 466 VFVEIADG--VEGFIHISQLSIRRVDDPRDAVSEGDEIVAKVIGIDEERRRISLSVKAIH 523

Query: 809 IDRFREANSNRQAQKKKRKREASKDLG 835
           +D+ RE   +  +Q+ + K   S  LG
Sbjct: 524 VDKEREELQDFLSQQGEDKFTLSDVLG 550



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 164/389 (42%), Gaps = 57/389 (14%)

Query: 1033 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1092
            V G+V ++ +E   + +   ++   F+     +   ++   + F  G  V   VLS+++E
Sbjct: 197  VRGHVSRITDEGIFVDLGDGIEG--FVPKDELDWRPIKNIAKVFRRGDVVRAKVLSVDEE 254

Query: 1093 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE----GDIVGGRISKILSGVGGLVVQIG 1148
            KK + L +R            ++  N      E    GD+V GR+ + L G   L+V   
Sbjct: 255  KKEMVLSIR------------LATPNPWQLFAEKHNVGDVVSGRVLRYLRGGLLLLVDRV 302

Query: 1149 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1208
              L      +  +   V D               Y  G  VK K+L      +      L
Sbjct: 303  TGLVPAQEVSWKRGAKVEDL--------------YKIGDHVKAKILRFDPEAQDLI---L 345

Query: 1209 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
            S++ +L                 P +++E+  D       +G V N+T  G F+ L+  +
Sbjct: 346  SVKEALG---------------DPWENVER--DFPVGSKAEGTVVNITDFGVFVELAPGI 388

Query: 1269 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1328
            +  V    +S    +   +   IG  V   VL +  + +++  TL   D+R     E+  
Sbjct: 389  EGLVPRRYVSWKRFKDINEVVNIGDQVEVVVLGINIVDRKI--TLSMRDTRPDPWEEV-- 444

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            + N+  G +V G++  +   G+F+ I +  + G  H+S+LS   VD+       G+++  
Sbjct: 445  VKNIQPGQLVRGKVVTIIPQGVFVEIAD-GVEGFIHISQLSIRRVDDPRDAVSEGDEIVA 503

Query: 1389 KILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            K++ +D+E+RRISL +K+ +   + + LQ
Sbjct: 504  KVIGIDEERRRISLSVKAIHVDKEREELQ 532



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 133/341 (39%), Gaps = 29/341 (8%)

Query: 190 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT 249
           +V   V  I + G+ +       G V    L +  P  N    + +   V A++L VD  
Sbjct: 196 IVRGHVSRITDEGIFVDLGDGIEGFVPKDEL-DWRPIKNIAKVFRRGDVVRAKVLSVDEE 254

Query: 250 SRAVGLTL-----NPYLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
            + + L++     NP+ L    HN       +V        ++ VDR  GL   +P+  V
Sbjct: 255 KKEMVLSIRLATPNPWQLFAEKHNVGDVVSGRVLRYLRGGLLLLVDRVTGL---VPAQEV 311

Query: 301 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 360
           S      + D+           YK G  V+ +IL F          +K +  +       
Sbjct: 312 SWKRGAKVEDL-----------YKIGDHVKAKILRFDPEAQDLILSVKEALGDPWENVER 360

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           D   G   +G V+ +  FG  V+   G++ L P  ++S        +   +G ++   VL
Sbjct: 361 DFPVGSKAEGTVVNITDFGVFVELAPGIEGLVPRRYVSWKRFKDINEVVNIGDQVEVVVL 420

Query: 421 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
           G+    ++IT++ + T       ++ +        +  G +  I   G FV   +GV+GF
Sbjct: 421 GINIVDRKITLSMRDTRPDPWEEVVKNIQPGQ---LVRGKVVTIIPQGVFVEIADGVEGF 477

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
              S+L +    +P      G  +  +++      RRI+LS
Sbjct: 478 IHISQLSIRRVDDPRDAVSEGDEIVAKVIGIDEERRRISLS 518



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 154/380 (40%), Gaps = 62/380 (16%)

Query: 66  LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG 125
           L++++KE  + K WL L+ S + +G              +V  I D G  +  G     G
Sbjct: 176 LEEEQKERAE-KAWLRLKDSDIVRG--------------HVSRITDEGIFVDLG-DGIEG 219

Query: 126 FLPRNNL----AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS 181
           F+P++ L     +N     + G +++  V S+D  +K + LS       +  T +   + 
Sbjct: 220 FVPKDELDWRPIKNIAKVFRRGDVVRAKVLSVDEEKKEMVLSI------RLATPNPWQLF 273

Query: 182 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND------YNQ 235
            +    G +VS RV   L    +L  +   TG V            +WK        Y  
Sbjct: 274 AEKHNVGDVVSGRVLRYLRG-GLLLLVDRVTGLV-------PAQEVSWKRGAKVEDLYKI 325

Query: 236 HKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHVK----VGDIYDQSKVVRVD 286
              V A+IL  DP ++ + L++     +P+    R  P   K    V +I D    V + 
Sbjct: 326 GDHVKAKILRFDPEAQDLILSVKEALGDPWENVERDFPVGSKAEGTVVNITDFGVFVELA 385

Query: 287 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 346
            G+  L  +P   VS   +  I++V              G  V V +LG   ++   T  
Sbjct: 386 PGIEGL--VPRRYVSWKRFKDINEVV-----------NIGDQVEVVVLGINIVDRKITLS 432

Query: 347 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 406
           ++ +  +       +++PG +V+GKV+ +   G  V+   GV+    +  +S   +  P 
Sbjct: 433 MRDTRPDPWEEVVKNIQPGQLVRGKVVTIIPQGVFVEIADGVEGFIHISQLSIRRVDDPR 492

Query: 407 KKFKVGAELVFRVLGVKSKR 426
                G E+V +V+G+  +R
Sbjct: 493 DAVSEGDEIVAKVIGIDEER 512


>gi|310287294|ref|YP_003938552.1| 30S ribosomal protein S1 [Bifidobacterium bifidum S17]
 gi|309251230|gb|ADO52978.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17]
          Length = 490

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 189/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ ++GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKSGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKSGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE       SG  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKSGEEVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 291
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 292 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 348
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 349 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 408
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 409 FKVGAELVFRVLGV--KSKRITVTHKKT 434
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKSGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKSGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|171743205|ref|ZP_02919012.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC
            27678]
 gi|283455814|ref|YP_003360378.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
 gi|306823050|ref|ZP_07456426.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
 gi|309801254|ref|ZP_07695383.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
 gi|171278819|gb|EDT46480.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27678]
 gi|283102448|gb|ADB09554.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
 gi|304553682|gb|EFM41593.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
 gi|308222143|gb|EFO78426.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
          Length = 490

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 188/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V KVD++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 291
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 292 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 348
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 349 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 408
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 409 FKVGAELVFRVLGV--KSKRITVTHKKT 434
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 41.6 bits (96), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|119025692|ref|YP_909537.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154487492|ref|ZP_02028899.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis
            L2-32]
 gi|118765276|dbj|BAF39455.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154084010|gb|EDN83055.1| putative ribosomal protein S1 [Bifidobacterium adolescentis L2-32]
          Length = 490

 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 188/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V KVD++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 291
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 292 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 348
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 349 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 408
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 409 FKVGAELVFRVLGV--KSKRITVTHKKT 434
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|311064142|ref|YP_003970867.1| 30S ribosomal protein S1 [Bifidobacterium bifidum PRL2010]
 gi|313139998|ref|ZP_07802191.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
 gi|390936652|ref|YP_006394211.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
 gi|310866461|gb|ADP35830.1| RpsA SSU ribosomal protein S1P [Bifidobacterium bifidum PRL2010]
 gi|313132508|gb|EFR50125.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
 gi|389890265|gb|AFL04332.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
          Length = 490

 Score = 98.2 bits (243), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 188/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 291
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 292 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 348
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 349 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 408
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 409 FKVGAELVFRVLGV--KSKRITVTHKKT 434
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|421735863|ref|ZP_16174741.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
 gi|407296849|gb|EKF16353.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
          Length = 490

 Score = 98.2 bits (243), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 188/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.0 bits (97), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 291
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 292 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 348
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 349 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 408
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 409 FKVGAELVFRVLGV--KSKRITVTHKKT 434
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|410865869|ref|YP_006980480.1| 30S ribosomal protein S1 [Propionibacterium acidipropionici ATCC
            4875]
 gi|410822510|gb|AFV89125.1| 30S ribosomal protein S1 [Propionibacterium acidipropionici ATCC
            4875]
          Length = 503

 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 188/416 (45%), Gaps = 64/416 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            +TV ++GS   F    D +I     G  VTG V KVD +  LL I       + ++   +
Sbjct: 30   VTVDDLGSPEAFMAAVDATIKYFNDGDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 89

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+        +G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 90   KHDVDPFEV------VQVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 136

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 137  KIKDEDGVVNGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 185

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S    +              ++
Sbjct: 186  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRHNF-------------LQ 223

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 224  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 282

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 283  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 336

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1415
             GL HVSEL+E HVD  E I   G++V VKI+ +D ++RRISL +K +    D D+
Sbjct: 337  EGLVHVSELAERHVDLPEQIVSVGQEVMVKIIDIDLDRRRISLSLKQANEGIDVDS 392



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 153/349 (43%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P +  +VG E+   V   + 
Sbjct: 55  GDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVQVGDEIEALVQQKED 114

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +     + +G + ++ K G  V    G++GF P S
Sbjct: 115 KEGRLILSKKRAQYERAWGTIEKIKDEDG--VVNGTVIEVVKGGLIVDI--GLRGFLPAS 170

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 171 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHNFLQQLQ 226

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 227 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 281

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 282 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 336

Query: 652 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  + +  DL  +   VGQ V   I+D++ +  RI+LSLKQ+
Sbjct: 337 EGLVHVSELAE-RHVDLPEQIVSVGQEVMVKIIDIDLDRRRISLSLKQA 384


>gi|156741406|ref|YP_001431535.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
            DSM 13941]
 gi|156232734|gb|ABU57517.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 503

 Score = 97.8 bits (242), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 10/186 (5%)

Query: 1229 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1288
             + P     +++DL+P M ++G V ++   G F+ +    D  V +S +SD  +ESP   
Sbjct: 123  AEAPTGRPRRVKDLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDL 182

Query: 1289 FPIGKLVAGRVLSVEPLSKRVEVTLKTSD-------SRTASQSEI--NNLSNLHVGDIVI 1339
              IG  V  RV SVEP  +R+ +T++  +        R   + E+  + L+ L VGD V 
Sbjct: 183  VKIGDTVKVRVKSVEPDGRRISLTMRMKERGAEPRSGRGKKKPEVDYDKLAALRVGDNVE 242

Query: 1340 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1399
            G +  +  +G+F+ I      GL HVSEL+E  V+  E + + G+    K+L+VD E  R
Sbjct: 243  GTVTGLAPFGVFVDI-GVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAEGAR 301

Query: 1400 ISLGMK 1405
            ISL ++
Sbjct: 302  ISLSLR 307



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 34/262 (12%)

Query: 456 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515
            G +T I  +G FV    G  G    SE+       PS +  +G  VK R+ S  P  RR
Sbjct: 143 EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRR 202

Query: 516 INLSFMM-------------KPTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGY 560
           I+L+  M             K   V  D L  +++G  V G V  + P  V V +   G 
Sbjct: 203 ISLTMRMKERGAEPRSGRGKKKPEVDYDKLAALRVGDNVEGTVTGLAPFGVFVDI---GV 259

Query: 561 SK-GTIPTEHLAD-HLEHATVMKSVIKPG--YEFDQLLVLDNESSNLLLSAKYSLINSAQ 616
            K G +    LA+  +E A   + V++ G  Y F ++L +D E + + LS + +     Q
Sbjct: 260 GKDGLVHVSELAEGRVEKA---EDVVQVGQTYTF-KVLEVDAEGARISLSLRRA--QRGQ 313

Query: 617 QLPSDASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           +L      +    ++ G +  +   G FV   +GR  G    S+  + + A +     VG
Sbjct: 314 KL----QQLEKGQILEGTISGLAPFGAFVDIGVGR-DGLVHISELSNARVARVEDAVKVG 368

Query: 676 QSVRSNILDVNSETGRITLSLK 697
             V+  +LDV+ ++ RI+LSL+
Sbjct: 369 DKVQVRVLDVDPQSKRISLSLR 390



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 27/263 (10%)

Query: 908  KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
            +A +E  T   +R K  +    G  ++  +T I    + +  G+G  G +HI+E++D + 
Sbjct: 120  QAPAEAPTGRPRRVKDLAP---GMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTR- 175

Query: 968  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD- 1026
              +E+     KIG TV  R+  KS +PD ++  L     +      S  G K    + D 
Sbjct: 176  --IESPSDLVKIGDTVKVRV--KSVEPDGRRISLTMRMKERGAEPRSGRGKKKPEVDYDK 231

Query: 1027 ---VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1083
               + +G  V G V  +      + I       + +  S      +++ +    +G+  T
Sbjct: 232  LAALRVGDNVEGTVTGLAPFGVFVDIGVGKDGLVHV--SELAEGRVEKAEDVVQVGQTYT 289

Query: 1084 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1143
              VL ++ E   + L LR  Q G            +Q  + +G I+ G IS +     G 
Sbjct: 290  FKVLEVDAEGARISLSLRRAQRG----------QKLQQ-LEKGQILEGTISGLAP--FGA 336

Query: 1144 VVQIGPHLYGRVHFTELKNICVS 1166
             V IG    G VH +EL N  V+
Sbjct: 337  FVDIGVGRDGLVHISELSNARVA 359


>gi|312133007|ref|YP_004000346.1| rpsa [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773993|gb|ADQ03481.1| RpsA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 491

 Score = 97.8 bits (242), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 195/426 (45%), Gaps = 71/426 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +     +D++
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA-----SDSV 369

Query: 1417 QMSSEE 1422
              +SE+
Sbjct: 370  DPASED 375



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQASDSVDPAS 373



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 147/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 LPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +     S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|56963639|ref|YP_175370.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
 gi|56909882|dbj|BAD64409.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
          Length = 384

 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 186/385 (48%), Gaps = 60/385 (15%)

Query: 1028 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1087
            S+G  VTG V KV+++ A + +        F +D     SEL       H+ KA    VL
Sbjct: 16   SVGDIVTGKVTKVEDKQAFVDVG-------FKVDGIVPISELS----SLHVEKA--SDVL 62

Query: 1088 SINKEKKLLRLVLRPFQDG---ISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1142
            S++ E   L L +   +D    +S K V      + ++    +G+++   +++++ G  G
Sbjct: 63   SVDDE---LELKVTKVEDDELILSKKAVQAEKAWEQLEEAYEKGEVIEAEVAEVVKG--G 117

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
            LVV +G  + G +            P S  +    +  S Y +G+ ++ KV EI +    
Sbjct: 118  LVVDVG--VRGFI------------PASLVERHYVEDFSDY-KGKPLRLKVTEIDKDNNK 162

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
                 LS R+ LD            +++   K +  +  LS   +V+G V+ +TS G F+
Sbjct: 163  LI---LSQRAVLD-----------AEIEEKKKQV--LHSLSTGDVVEGKVQRLTSFGAFV 206

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
             +   +D  V +S ++   VE P      G+ V  +VLSV+P S+RV +++K      A 
Sbjct: 207  DVG-GVDGLVHISQIAHERVEHPSDVLSEGQEVRVKVLSVDPDSERVSLSIK---EMLAG 262

Query: 1323 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1382
              E N  S    GDIV G +KR+ S+G F+ I    + GL H+S++S+ H+   + +   
Sbjct: 263  PWE-NIESKFSAGDIVTGTVKRLVSFGAFVEI-APGVEGLVHISQISKRHIGTPQEVLEE 320

Query: 1383 GEKVKVKILKVDKEKRRISLGMKSS 1407
            G++V+ K+L+V +  RR+SL ++ +
Sbjct: 321  GQQVQAKVLEVSEADRRVSLSIREA 345



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G VV+GKV  + SFGA V   GGV  L  +  ++   +  P      G E+  +VL V  
Sbjct: 189 GDVVEGKVQRLTSFGAFVDV-GGVDGLVHISQIAHERVEHPSDVLSEGQEVRVKVLSVDP 247

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
            S+R++++ K+ L      I S ++ A D  I  G + ++   G FV    GV+G    S
Sbjct: 248 DSERVSLSIKEMLAGPWENIESKFS-AGD--IVTGTVKRLVSFGAFVEIAPGVEGLVHIS 304

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++       P  +   GQ V+ +++    A RR++LS 
Sbjct: 305 QISKRHIGTPQEVLEEGQQVQAKVLEVSEADRRVSLSI 342



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 151/403 (37%), Gaps = 91/403 (22%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G +TK+E    FV     V G  P SEL         S  HV +     ++S     
Sbjct: 20  IVTGKVTKVEDKQAFVDVGFKVDGIVPISEL---------SSLHVEKA--SDVLS----- 63

Query: 514 RRINLSFMMKPTRVSEDDLV-------------------KLGSLVSGVVDVVTPNAVVVY 554
             ++    +K T+V +D+L+                   + G ++   V  V    +VV 
Sbjct: 64  --VDDELELKVTKVEDDELILSKKAVQAEKAWEQLEEAYEKGEVIEAEVAEVVKGGLVVD 121

Query: 555 VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS 614
           V  +G+   ++   H  +           +K       +  +D +++ L+LS +  L   
Sbjct: 122 VGVRGFIPASLVERHYVEDFSDYKGKPLRLK-------VTEIDKDNNKLILSQRAVLDAE 174

Query: 615 AQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 673
            ++      H +    VV G V  +   G FV  +G + G    S+    +    S    
Sbjct: 175 IEEKKKQVLHSLSTGDVVEGKVQRLTSFGAFVD-VGGVDGLVHISQIAHERVEHPSDVLS 233

Query: 674 VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 733
            GQ VR  +L V+ ++ R++LS+K+      +         +E K               
Sbjct: 234 EGQEVRVKVLSVDPDSERVSLSIKEMLAGPWEN--------IESK--------------- 270

Query: 734 WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG-------ATVESGSVI 786
               F  G ++ G V     FG  V       V G +   Q++          +E G  +
Sbjct: 271 ----FSAGDIVTGTVKRLVSFGAFVEI--APGVEGLVHISQISKRHIGTPQEVLEEGQQV 324

Query: 787 QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKRE 829
           QA +L+V++A+R V LS+        REA S  Q +K+ R  E
Sbjct: 325 QAKVLEVSEADRRVSLSI--------REA-SEEQERKETRAYE 358


>gi|296453875|ref|YP_003661018.1| RNA-binding S1 domain-containing protein [Bifidobacterium longum
            subsp. longum JDM301]
 gi|384199820|ref|YP_005585563.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC
            15697 = JCM 1222]
 gi|296183306|gb|ADH00188.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. longum
            JDM301]
 gi|320458772|dbj|BAJ69393.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC
            15697 = JCM 1222]
          Length = 491

 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEAVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEAVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEAVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|213692621|ref|YP_002323207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC
            15697 = JCM 1222]
 gi|213524082|gb|ACJ52829.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. infantis
            ATCC 15697 = JCM 1222]
          Length = 491

 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGEAVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEAVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEAVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|317481889|ref|ZP_07940916.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
 gi|316916680|gb|EFV38075.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
          Length = 491

 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|227546158|ref|ZP_03976207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum ATCC
            55813]
 gi|239621800|ref|ZP_04664831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis CCUG
            52486]
 gi|322688831|ref|YP_004208565.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
            157F]
 gi|322690819|ref|YP_004220389.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
            1217]
 gi|384201809|ref|YP_005587556.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
            91563]
 gi|419846596|ref|ZP_14369831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 1-6B]
 gi|419850464|ref|ZP_14373454.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
 gi|419853759|ref|ZP_14376564.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 2-2B]
 gi|419855926|ref|ZP_14378671.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
 gi|227213139|gb|EEI81011.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC
            55813]
 gi|239514991|gb|EEQ54858.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis CCUG
            52486]
 gi|291517108|emb|CBK70724.1| SSU ribosomal protein S1P [Bifidobacterium longum subsp. longum F8]
 gi|320455675|dbj|BAJ66297.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
            1217]
 gi|320460167|dbj|BAJ70787.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
            157F]
 gi|338754816|gb|AEI97805.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
            91563]
 gi|386406831|gb|EIJ21825.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 2-2B]
 gi|386408991|gb|EIJ23869.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
 gi|386413633|gb|EIJ28225.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 1-6B]
 gi|386414587|gb|EIJ29140.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
          Length = 491

 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
 gi|189439608|ref|YP_001954689.1| 30S ribosomal protein S1 [Bifidobacterium longum DJO10A]
 gi|23326226|gb|AAN24800.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
 gi|189428043|gb|ACD98191.1| Ribosomal protein S1 [Bifidobacterium longum DJO10A]
          Length = 491

 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|261338679|ref|ZP_05966563.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
 gi|270276304|gb|EFA22158.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
          Length = 495

 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 174/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 36   GDLVEGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVE------VGDTI--E 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1144
             L + KE K  RL+L   +        DI        I E D +V G + + + G  GL+
Sbjct: 88   ALVVTKEDKEGRLILSKKRAQYERAWGDIEK------IKEDDGVVEGTVIEAVKG--GLI 139

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V IG   +      E++ +    P  G               Q +K K+LE+ +      
Sbjct: 140  VDIGLRGFLPASLVEMRRVRDLSPYIG---------------QKIKAKILELDKNRN--- 181

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            +V LS R  L+   S                   +  L    I +G V ++ + G F+ L
Sbjct: 182  NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDL 228

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK +      + 
Sbjct: 229  G-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QED 282

Query: 1325 EINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  HV G IV G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + G
Sbjct: 283  PWQRFARTHVPGQIVRGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKPG 341

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            E+V VK++ VD ++RRISL +K +
Sbjct: 342  EEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G+V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKE--DDGVVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVRGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEDDGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G ++ GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVRGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 41.6 bits (96), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 291
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 292 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 348
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 349 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 408
              ++    TH    PG +V+GKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 409 FKVGAELVFRVLGV--KSKRITVTHKKT 434
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|384135335|ref|YP_005518049.1| RNA binding S1 domain-containing protein [Alicyclobacillus
            acidocaldarius subsp. acidocaldarius Tc-4-1]
 gi|339289420|gb|AEJ43530.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius subsp.
            acidocaldarius Tc-4-1]
          Length = 392

 Score = 97.1 bits (240), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 167/391 (42%), Gaps = 56/391 (14%)

Query: 1021 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1076
            +  +  V  G  VTG V  VD+    + +      H+  Q         PS++       
Sbjct: 15   MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDV------V 68

Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
             +G  VT  VL ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 69   SVGSTVTAQVLKVDMESGHVTLSKRRAEQASA-------WERMQRLLESGEPIEVEIRDV 121

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
            + G  GLV  +G   +               P S  D    + L  + +GQ ++ KV+E+
Sbjct: 122  VKG--GLVADVGVRAF--------------IPASLVDRHFVENLEQF-KGQKLRAKVIEV 164

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
                       LS R+ L+  S   +  L              E+L P  +++G V+ +T
Sbjct: 165  DPQKNKLI---LSRRAVLEEESEARARKL-------------FEELKPGDVIEGTVQRLT 208

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
              G F+ +    D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +
Sbjct: 209  DFGAFVDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAA 267

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
                  +           GD+V G ++RV  +G F+ +    L GL HVS++S + VD  
Sbjct: 268  ----LPEPWETYAHEFQPGDVVQGVVRRVLDFGAFVEL-RPGLEGLVHVSQISNERVDKP 322

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + + G++V V++L VD E++RISL M+ S
Sbjct: 323  SDVLQPGQEVTVRVLSVDPERKRISLSMRDS 353



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 147/359 (40%), Gaps = 33/359 (9%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           + T + V+ G VV G+V AVD  G  V  P G +       +S      P     VG+ +
Sbjct: 15  MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTV 74

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 470
             +VL V  +   VT  K     + A  +S  E   RL+  G   ++E     K G    
Sbjct: 75  TAQVLKVDMESGHVTLSK-----RRAEQASAWERMQRLLESGEPIEVEIRDVVKGGLVAD 129

Query: 471 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
              GV+ F P S +  D     +     GQ ++ +++   P   ++ LS        SE 
Sbjct: 130 V--GVRAFIPASLV--DRHFVENLEQFKGQKLRAKVIEVDPQKNKLILSRRAVLEEESEA 185

Query: 531 DLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 583
              KL      G ++ G V  +T     V V   G + G +    L+  H+ H +    V
Sbjct: 186 RARKLFEELKPGDVIEGTVQRLTDFGAFVDV---GGADGLVHISELSFSHVNHPS---EV 239

Query: 584 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
           ++ G     ++L +D E+  + LS K +L    +     A    P  VV G V  +++ G
Sbjct: 240 VREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETY---AHEFQPGDVVQGVVRRVLDFG 296

Query: 643 CFVRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
            FV     L G    S+ +  +R D  S     GQ V   +L V+ E  RI+LS++ S 
Sbjct: 297 AFVELRPGLEGLVHVSQ-ISNERVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSS 354



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 154/363 (42%), Gaps = 36/363 (9%)

Query: 87  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGID----VK 141
           L + L+   V+EG V+T  V +++DHG  +   LP  + G +    L+   G      V 
Sbjct: 12  LREMLTDAAVREGDVVTGEVTAVDDHGVTV--ALPHGYEGHISPQELSAVPGTHPSDVVS 69

Query: 142 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 201
            G  +   V  +D     V LS      +    +  +     LL  G  +   ++ +++ 
Sbjct: 70  VGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQR-----LLESGEPIEVEIRDVVKG 124

Query: 202 GVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 258
           G++  +    +   + VD   ++N         +  + +K+ A+++ VDP    + L+  
Sbjct: 125 GLVADVGVRAFIPASLVDRHFVENL--------EQFKGQKLRAKVIEVDPQKNKLILSRR 176

Query: 259 PYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
             L        R     +K GD+ + +     D   G  +D+          V IS+++ 
Sbjct: 177 AVLEEESEARARKLFEELKPGDVIEGTVQRLTD--FGAFVDVGGAD----GLVHISELSF 230

Query: 314 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
             V    +  +EG  V+VR+L      G  +  +KA+  E       + +PG VV+G V 
Sbjct: 231 SHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVR 290

Query: 374 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 431
            V  FGA V+   G++ L  +  +S   + KP    + G E+  RVL V  + KRI+++ 
Sbjct: 291 RVLDFGAFVELRPGLEGLVHVSQISNERVDKPSDVLQPGQEVTVRVLSVDPERKRISLSM 350

Query: 432 KKT 434
           + +
Sbjct: 351 RDS 353



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 156/390 (40%), Gaps = 63/390 (16%)

Query: 930  GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
            G +V  E+T +    + +    G+ G I   E++        ++ S   +G TVTA+++ 
Sbjct: 24   GDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVS---VGSTVTAQVLK 80

Query: 990  ---KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1046
               +S    + K    + S    M  + E G  +  E  DV  G  V     +     +L
Sbjct: 81   VDMESGHVTLSKRRAEQASAWERMQRLLESGEPIEVEIRDVVKGGLVADVGVRAFIPASL 140

Query: 1047 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106
              + RH     F+         L++F+     G+ +   V+ ++ +K  L L  R     
Sbjct: 141  --VDRH-----FV-------ENLEQFK-----GQKLRAKVIEVDPQKNKLILSRR----A 177

Query: 1107 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1166
            + ++  +     +   +  GD++ G + ++     G  V +G    G VH +EL    V+
Sbjct: 178  VLEEESEARARKLFEELKPGDVIEGTVQRLTDF--GAFVDVG-GADGLVHISELSFSHVN 234

Query: 1167 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226
             P     EG             VK +VL +         + LS++++L     T +    
Sbjct: 235  HPSEVVREGDR-----------VKVRVLRVDPE---AGRISLSIKAALPEPWETYA---- 276

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
                          +  P  +VQG V+ V   G F+ L   L+  V +S +S+  V+ P 
Sbjct: 277  -------------HEFQPGDVVQGVVRRVLDFGAFVELRPGLEGLVHVSQISNERVDKPS 323

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
                 G+ V  RVLSV+P  KR+ ++++ S
Sbjct: 324  DVLQPGQEVTVRVLSVDPERKRISLSMRDS 353


>gi|407044026|gb|EKE42318.1| S1 RNA binding domain containing protein, partial [Entamoeba
           nuttalli P19]
          Length = 1192

 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 194/438 (44%), Gaps = 26/438 (5%)

Query: 282 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 341
           + ++D  +G+   I  T      +++   + +E    + K+++ GS  + R++ +   +G
Sbjct: 86  ISKIDENVGI---IGETEDKEEVFLSKKQIKDESCSDIPKEFQIGSTHKGRVMYYSAFDG 142

Query: 342 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 401
                 + S       +  D+K GM+++G +  V+  G IV+    +   C   +  +  
Sbjct: 143 YCGITTRESILSDKYQSIFDIKSGMIIEGTIKEVNEKGIIVKIGEKIYGFCDKINSGDIP 202

Query: 402 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 459
           I      FK   +  FRVL V ++   I +THK+TL+K+   I+++  E     IT G +
Sbjct: 203 IEDLQSVFKKEQKSKFRVLTVNNRNNSIYLTHKRTLMKATTPIITTIEETELNTITFGTV 262

Query: 460 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 518
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 263 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKVRIISFDKQLLLCSL 318

Query: 519 SFMMK---PTRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLAD 572
           +   +   P +  +     ++G +  G+V V     +++  I  G  +    +P   + D
Sbjct: 319 NLFPEENVPEKYEDVSRHFEVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVID 377

Query: 573 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 632
             E   + K +I+ G    + L+L N+   ++++ K SLI+  +++    S        +
Sbjct: 378 GDEGQDIPK-MIRNGTILKECLLLKNQMGQMVITTKKSLISLRKKIGKFNSKEEMTVGKY 436

Query: 633 -GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
            GYV  I    CF+ F   +T    R    D     + +   VGQ+V   +        +
Sbjct: 437 IGYVSKIKGKYCFISFYNGITILCYRMNVSD-TNLPIEEVLEVGQTVYGYL------NKK 489

Query: 692 ITLSLKQSCCSSTDASFM 709
              SLK+S   S    FM
Sbjct: 490 GIFSLKESSVGSIKEEFM 507



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 135/312 (43%), Gaps = 44/312 (14%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            I EG+I+ G +    +    + V I  +  G +H+ ++ N  V +P          P   
Sbjct: 834  IKEGEIIVGEVIGNNTKELKIKVLIKGNRIGYIHYCDISN--VFNPF---------PRDY 882

Query: 1183 YDEGQFVKCKVL----EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
               G+++   VL    EIS ++R  +     L+ + D +       + T + T       
Sbjct: 883  LQNGKYINMYVLSNKPEISCSMRKEY-----LKEAYDEIFPPLIGGVQTRIVTK------ 931

Query: 1239 IEDLSPNMIVQGYV-KNVTSKGCFIMLSRKLDAKVLLSNLSDG---YVESPEKEFPIGKL 1294
             +++    I+ GY+ K+   +G  +M+SR +   V    L D    + +   + F I +L
Sbjct: 932  -DNIKEGEILTGYIIKSSEEEGVDVMVSRDVTIHVAPGELLDNTSYHGKDFSRIFCIQRL 990

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            V   ++  E L    E TLK S           ++    V   VI  I    S GLF+  
Sbjct: 991  VKVSIIDKEGL----EGTLKQSVIYPGIIKYFKDIKENIVTKCVIVNIT---SEGLFLRF 1043

Query: 1355 ENTNLVGLCHVSELSEDHV--DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
             N+N+ GLCH S++ +  +    +E  ++  + +  K++ +DK+K R++  +K      D
Sbjct: 1044 FNSNIRGLCHCSKIEDKKLTKKEMEKRFKIKDVIMAKVVHIDKKKHRVNFSIKPE----D 1099

Query: 1413 ADNLQMSSEEES 1424
               ++M  EEE+
Sbjct: 1100 VGEVEMKDEEET 1111


>gi|421733456|ref|ZP_16172561.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
 gi|407078595|gb|EKE51396.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
          Length = 490

 Score = 96.3 bits (238), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 190/411 (46%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +              
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVR------------- 159

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
              LS Y  GQ +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 160  -DLSPYI-GQKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ ++ E+V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKSSEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 153/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +        + V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKSSEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 152/376 (40%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-GSVIQAA------ 789
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+  +V++++      
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKSSEEVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|229817852|ref|ZP_04448134.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
            20098 = JCM 7096]
 gi|229784752|gb|EEP20866.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
            20098 = JCM 7096]
          Length = 490

 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  V    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTV--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q ++ K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIEAKILELDKNRN---NVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 147/373 (39%), Gaps = 42/373 (11%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 560
            V+  +++      R+ LS        +  D+ K+     GVV+     AV   +I    
Sbjct: 85  TVEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKE-ADGVVEGTVIEAVKGGLIVDIG 143

Query: 561 SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL-P 619
            +G +P   +   +     +   I    E  ++L LD   +N++LS +  L  +  ++  
Sbjct: 144 LRGFLPASLV--EMRRVRDLSPYIGQKIEA-KILELDKNRNNVVLSRRQYLEETQSEVRE 200

Query: 620 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
           +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG  V 
Sbjct: 201 TFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGDKVT 259

Query: 680 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 739
             +LDV+ +  RI+LSLK +        F + H                          +
Sbjct: 260 VEVLDVDLDRERISLSLK-ATQEDPWQRFARTH--------------------------V 292

Query: 740 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 792
            G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   ++D
Sbjct: 293 PGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVKVID 350

Query: 793 VAKAERLVDLSLK 805
           V    R + LSLK
Sbjct: 351 VDLDRRRISLSLK 363



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTVEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ ++ +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIEAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|449703272|gb|EMD43754.1| S1 RNA binding domain containing protein [Entamoeba histolytica
           KU27]
          Length = 1234

 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 196/439 (44%), Gaps = 28/439 (6%)

Query: 282 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 341
           + ++D  +G+   I  T      +++   + +E    + K++K GS  + R++ +   +G
Sbjct: 456 ISKIDENVGI---IGETEDKEEVFLSKKQIKDESCSDIPKEFKIGSTHKGRVMYYSAFDG 512

Query: 342 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 401
                 + S       +  D+K GM+++G +  V+  G IV+    +   C   +  +  
Sbjct: 513 YCGITTRESILSDKYQSIFDIKSGMIIEGTIKEVNEKGIIVKIGEKIYGFCDKINSGDIP 572

Query: 402 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 459
           I      FK   +  FRVL V ++   I +THK+TL+K+   I+++  E     IT G +
Sbjct: 573 IEDLQSVFKKEQKSKFRVLTVNNRNNSIYLTHKRTLMKATTPIITTIEETELNTITFGTV 632

Query: 460 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 518
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 633 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKVRIISFDKQLLLCSL 688

Query: 519 SFMMKPTRVSE--DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLA 571
           + +     V E  +D+ +   +G +  G+V V     +++  I  G  +    +P   + 
Sbjct: 689 N-LFPEENVPEKYEDVSRHFEVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVI 746

Query: 572 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 631
           D  E   + K +I+ G    + L+L N+   ++++ K SLI+  +++    S        
Sbjct: 747 DGDEGQDIPK-MIRNGTILKECLLLKNQMGQMVITTKKSLISLRKKIGKFNSKEEMTVGK 805

Query: 632 H-GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
           + GYV  I    CF+ F   +T    R    D     + +   VGQ+V   +        
Sbjct: 806 YIGYVSKIKGKYCFISFYNGVTILCYRMNVSD-TNLPIEEVLEVGQTVYGYL------NK 858

Query: 691 RITLSLKQSCCSSTDASFM 709
           +   SLK+S   S    FM
Sbjct: 859 KGIFSLKESSVGSIKEEFM 877


>gi|380494873|emb|CCF32825.1| rRNA biogenesis protein RRP5, partial [Colletotrichum higginsianum]
          Length = 565

 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 178/404 (44%), Gaps = 38/404 (9%)

Query: 3   LWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL----------- 48
           + G +  ++   L I LP  L G   +A  +D  +  L+ ++ A ++             
Sbjct: 142 VLGQITHIDTVQLTIALPNNLTGHVSIASISDTTNSKLEKDLNAADEESDDDEEEDDEGI 201

Query: 49  -LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 106
            L ++F +GQ V   VL   D+      KR+I LSLR +    G++ + V     L A +
Sbjct: 202 DLKSMFKIGQYVRTHVLSTADESGPGKAKRRIELSLRPAEANAGITGDDVVAHTTLMASI 261

Query: 107 KSIEDHGYILHFGLPS-FTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSS 164
            S++DHGY +  G+     GFLP+  +  +     ++PG +   VV+S+  T  VV LS+
Sbjct: 262 ASVQDHGYEMDLGIEGDLKGFLPKKEVGPDMDEASLRPGAVCLCVVKSV--TGIVVQLST 319

Query: 165 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 224
           DP  +           +I+  +PG +    +  +   G+    L +   T D+ H     
Sbjct: 320 DPLKLGNTSLVASTAPTINSFLPGSLADVLLTEVTSRGIQGKLLGHLPVTADLIHSGVGP 379

Query: 225 PTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLL-----------HNRAPPSHV 271
              + +  Y    +V ARI+   P +R   +G++L P+++             +AP   +
Sbjct: 380 DNVDLEAKYTVGTRVKARIICNFPAAREPKLGISLLPHIVGLQPKSSGKGSRAKAPLDIL 439

Query: 272 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSC 328
            +    ++  V +V+  +GL +D     ++   +V IS V + +V  L      +K GS 
Sbjct: 440 PIASFVEKCTVRKVEPEIGLYVDTGVPGIA--GFVHISRVKDGKVDALYETSGPHKVGST 497

Query: 329 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 372
            R R++G+  L+G+     + +  +       DV  G VV GK+
Sbjct: 498 HRGRVVGYSSLDGMFLLSFEQNILDQPFIRLEDVPVGEVVSGKI 541


>gi|384915508|ref|ZP_10015724.1| 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
 gi|384527058|emb|CCG91595.1| 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
          Length = 558

 Score = 95.5 bits (236), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 194/415 (46%), Gaps = 64/415 (15%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAV 1082
            V +G  V G V  V +  A + +   +   + I D ++     PSE+        +G+ +
Sbjct: 179  VHVGDLVKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWGRINHPSEI------LKVGQEI 231

Query: 1083 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1142
               V+ +++EK+ + L       G+  KT +   +N++     G  V G++  +     G
Sbjct: 232  EVVVIDVDREKERVSL-------GLKQKTPN-PWENIEEKYPVGTKVKGKVVNLAPY--G 281

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
              +++ P + G VH +E+           + +    P      GQ V+  VL+I++    
Sbjct: 282  AFIELEPGIEGLVHISEI----------SWTQKITKPSEVLSMGQEVEAMVLDINKA--- 328

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
                E  L  SL  +   N  D ++++  PG             IV+G VKN ++ G +I
Sbjct: 329  ----EQKLSLSLKALE-VNPWDKASELYPPG------------TIVKGKVKNFSAYGAYI 371

Query: 1263 MLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
             L   LD  + +++LS    +  P +    G+ +  +VL ++  ++++ + +K       
Sbjct: 372  ELENALDGFIHVNDLSWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKILLGIKQLTEDPW 431

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1381
             + E        VG+IV G++ ++ S+G FI + +  + GL H+S++S D V  ++ + +
Sbjct: 432  KEIE----KKYKVGEIVSGKVSKIASFGAFIQLAD-EIDGLVHISQISADRVAKVKDVLK 486

Query: 1382 AGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE---AIEEVGS 1433
             G++V  +I+K+DKE+RRI L +K+ ++  +    Q+  E E  E     EE+GS
Sbjct: 487  VGQEVSARIIKIDKEERRIGLSIKALHYTPE----QLEKEREKMEFSRPAEELGS 537



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 122/573 (21%), Positives = 243/573 (42%), Gaps = 96/573 (16%)

Query: 435 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 494
           +V+  LA +  + E +   I  G +         V      +G  P SE       EP S
Sbjct: 1   MVEMTLASIPDFVEGS---IVKGKVVDKNSKEVVVDIGYKSEGIIPLSEF-----EEPES 52

Query: 495 MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAV 551
           +  VGQ ++  + S       + LS      + + D ++K    G  ++G V  V    +
Sbjct: 53  I-QVGQEIEVLLESLENEEGMVVLSRQKAAQKQNWDKILKTFEEGGTITGKVKQVVKGGL 111

Query: 552 VVYVIAKGYSKGT----IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 607
           ++ +  + +   +    +P ++L ++ E AT+   ++K          +  E  N++LS 
Sbjct: 112 MLNIGVEAFLPASQIDVVPPKNLKEY-EGATLTCKIVK----------ISEERKNVVLSR 160

Query: 608 KYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 666
           +  +     Q+       +H   +V G V N+ + G F+   G + G    +    G+  
Sbjct: 161 REIVEAERNQKRLQFLEKVHVGDLVKGVVKNVTDFGAFIDLDG-IDGLIHITDMSWGRIN 219

Query: 667 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 726
             S+   VGQ +   ++DV+ E  R++L LKQ   +  +         +EEK        
Sbjct: 220 HPSEILKVGQEIEVVVIDVDREKERVSLGLKQKTPNPWEN--------IEEK-------- 263

Query: 727 HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GA 778
                      + +G+ ++GKV     +G  +  E    + G +   +++          
Sbjct: 264 -----------YPVGTKVKGKVVNLAPYGAFIELE--PGIEGLVHISEISWTQKITKPSE 310

Query: 779 TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 838
            +  G  ++A +LD+ KAE+ + LSLK + ++ + +A+         + +   K+   + 
Sbjct: 311 VLSMGQEVEAMVLDINKAEQKLSLSLKALEVNPWDKASELYPPGTIVKGK--VKNFSAY- 367

Query: 839 TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKF--PQKQFLNGQSVIATVMALP 895
              A +E+  EN L           G+  V+D + T+K   P +    G+ + A V+ + 
Sbjct: 368 --GAYIEL--ENAL----------DGFIHVNDLSWTRKINHPSEVLKKGEEIEAKVLEI- 412

Query: 896 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 955
              T  ++LL +K ++E      K  +KK  Y VG +V  ++++I      ++      G
Sbjct: 413 -DKTNQKILLGIKQLTE---DPWKEIEKK--YKVGEIVSGKVSKIASFGAFIQLADEIDG 466

Query: 956 RIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
            +HI++++ D+   V+++    K+GQ V+ARII
Sbjct: 467 LVHISQISADRVAKVKDV---LKVGQEVSARII 496



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 147/343 (42%), Gaps = 24/343 (6%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
           G +VKG V  V  FGA +    G+  L  +  MS   I  P +  KVG E+   V+ V  
Sbjct: 182 GDLVKGVVKNVTDFGAFIDL-DGIDGLIHITDMSWGRINHPSEILKVGQEIEVVVIDVDR 240

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           + +R+++  K+        I   Y   T      G +  +  +G F+    G++G    S
Sbjct: 241 EKERVSLGLKQKTPNPWENIEEKYPVGTK---VKGKVVNLAPYGAFIELEPGIEGLVHIS 297

Query: 483 ELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----LVKLGS 537
           E+       +PS +  +GQ V+  ++    A ++++LS  +K   V+  D    L   G+
Sbjct: 298 EISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLS--LKALEVNPWDKASELYPPGT 355

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFD-QLL 594
           +V G V   +  A   Y+  +    G I    L+    + H +    V+K G E + ++L
Sbjct: 356 IVKGKVKNFS--AYGAYIELENALDGFIHVNDLSWTRKINHPS---EVLKKGEEIEAKVL 410

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D  +  +LL  K    +  +++           +V G V  I   G F++    + G 
Sbjct: 411 EIDKTNQKILLGIKQLTEDPWKEI---EKKYKVGEIVSGKVSKIASFGAFIQLADEIDGL 467

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
              S+    + A +     VGQ V + I+ ++ E  RI LS+K
Sbjct: 468 VHISQISADRVAKVKDVLKVGQEVSARIIKIDKEERRIGLSIK 510



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 41/289 (14%)

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
            ++TF  EG  + G++ +++ G  GL++ IG        F     I V  P +        
Sbjct: 90   LKTF-EEGGTITGKVKQVVKG--GLMLNIGVE-----AFLPASQIDVVPPKN-------- 133

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
             L  Y EG  + CK+++IS   +   +V LS R  ++   +              K L+ 
Sbjct: 134  -LKEY-EGATLTCKIVKISEERK---NVVLSRREIVEAERNQ-------------KRLQF 175

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +E +    +V+G VKNVT  G FI L   +D  + ++++S G +  P +   +G+ +   
Sbjct: 176  LEKVHVGDLVKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWGRINHPSEILKVGQEIEVV 234

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            V+ V+   +RV + LK    +T +  E N      VG  V G++  +  YG FI +E   
Sbjct: 235  VIDVDREKERVSLGLK---QKTPNPWE-NIEEKYPVGTKVKGKVVNLAPYGAFIELE-PG 289

Query: 1359 LVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            + GL H+SE+S    +     +   G++V+  +L ++K ++++SL +K+
Sbjct: 290  IEGLVHISEISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLSLKA 338



 Score = 68.2 bits (165), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 198/473 (41%), Gaps = 69/473 (14%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           D   G +VKGKV+  +S   +V      + + PL    E E ++ G++     E++   L
Sbjct: 11  DFVEGSIVKGKVVDKNSKEVVVDIGYKSEGIIPLSEFEEPESIQVGQEI----EVLLESL 66

Query: 421 GVKSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
             +   + ++ +K   K     IL ++ E     IT G + ++ K G  +    GV+ F 
Sbjct: 67  ENEEGMVVLSRQKAAQKQNWDKILKTFEEGG--TIT-GKVKQVVKGGLMLNI--GVEAFL 121

Query: 480 PRSELGLDPGCEPSSMY-HVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 532
           P S++ + P   P ++  + G  + C+I+       ++  SRR  +       R+   + 
Sbjct: 122 PASQIDVVP---PKNLKEYEGATLTCKIVKISEERKNVVLSRREIVEAERNQKRLQFLEK 178

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
           V +G LV GVV  VT      ++   G       T+     + H +    ++K G E + 
Sbjct: 179 VHVGDLVKGVVKNVTDFG--AFIDLDGIDGLIHITDMSWGRINHPS---EILKVGQEIEV 233

Query: 593 LLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +++ +D E   + L  K    N  + +       +P  + V G V N+   G F+     
Sbjct: 234 VVIDVDREKERVSLGLKQKTPNPWENIEEK----YPVGTKVKGKVVNLAPYGAFIELEPG 289

Query: 651 LTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
           + G    S+    Q+    S+   +GQ V + +LD+N    +++LSLK    +  D +  
Sbjct: 290 IEGLVHISEISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLSLKALEVNPWDKA-- 347

Query: 710 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 769
                               SEL     +  G++++GKV   + +G  +  E   D  GF
Sbjct: 348 --------------------SEL-----YPPGTIVKGKVKNFSAYGAYIELENALD--GF 380

Query: 770 ITHHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
           I  + L+           ++ G  I+A +L++ K  + + L +K +  D ++E
Sbjct: 381 IHVNDLSWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKILLGIKQLTEDPWKE 433



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 105/496 (21%), Positives = 193/496 (38%), Gaps = 61/496 (12%)

Query: 50  PTIFHVGQLVSCIVLQLDDD-------KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 102
           P    VGQ +  ++  L+++       +++  +++ W  +          L+T +EG  +
Sbjct: 50  PESIQVGQEIEVLLESLENEEGMVVLSRQKAAQKQNWDKI----------LKTFEEGGTI 99

Query: 103 TAYVKSIEDHGYILHFGLPSF-----TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR 157
           T  VK +   G +L+ G+ +F        +P  NL E  G        L   +  I   R
Sbjct: 100 TGKVKQVVKGGLMLNIGVEAFLPASQIDVVPPKNLKEYEG------ATLTCKIVKISEER 153

Query: 158 KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 217
           K V LS      ++   K L+       +  + V   V+ +++N           G   +
Sbjct: 154 KNVVLSRREIVEAERNQKRLQ------FLEKVHVGDLVKGVVKNVTDFGAFIDLDGIDGL 207

Query: 218 FHLQN-TFPTTNWKNDYNQ-HKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSH 270
            H+ + ++   N  ++  +  +++   ++ VD     V L L     NP+       P  
Sbjct: 208 IHITDMSWGRINHPSEILKVGQEIEVVVIDVDREKERVSLGLKQKTPNPWENIEEKYPVG 267

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCV 329
            KV     + KVV +    G  +++          V IS+++  +++ K  +    G  V
Sbjct: 268 TKV-----KGKVVNL-APYGAFIELEP---GIEGLVHISEISWTQKITKPSEVLSMGQEV 318

Query: 330 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 389
              +L     E   +  LKA              PG +VKGKV    ++GA ++    + 
Sbjct: 319 EAMVLDINKAEQKLSLSLKALEVNPWDKASELYPPGTIVKGKVKNFSAYGAYIELENALD 378

Query: 390 ALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 448
               +  +S   +I  P +  K G E+  +VL      I  T++K L+  K      + E
Sbjct: 379 GFIHVNDLSWTRKINHPSEVLKKGEEIEAKVL-----EIDKTNQKILLGIKQLTEDPWKE 433

Query: 449 ATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 504
              +     I  G ++KI   G F++  + + G    S++  D   +   +  VGQ V  
Sbjct: 434 IEKKYKVGEIVSGKVSKIASFGAFIQLADEIDGLVHISQISADRVAKVKDVLKVGQEVSA 493

Query: 505 RIMSSIPASRRINLSF 520
           RI+      RRI LS 
Sbjct: 494 RIIKIDKEERRIGLSI 509



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 125/587 (21%), Positives = 232/587 (39%), Gaps = 96/587 (16%)

Query: 738  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA-TVESGSVIQAAILDVAKA 796
            F+ GS+++GKV + N   VVV     S+  G I   +     +++ G  I+  +  +   
Sbjct: 12   FVEGSIVKGKVVDKNSKEVVVDIGYKSE--GIIPLSEFEEPESIQVGQEIEVLLESLENE 69

Query: 797  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 856
            E +V L              S ++A +K+   +  K      T+   V+ V +  L+L  
Sbjct: 70   EGMVVL--------------SRQKAAQKQNWDKILKTFEEGGTITGKVKQVVKGGLML-- 113

Query: 857  PEYNHSIGY-ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 915
                 +IG  A +        P K     +    T   +  S     ++L  + I E E 
Sbjct: 114  -----NIGVEAFLPASQIDVVPPKNLKEYEGATLTCKIVKISEERKNVVLSRREIVEAE- 167

Query: 916  SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 975
             + KR +      VG LV+  +  +      +    G  G IHIT+++  + N    +  
Sbjct: 168  RNQKRLQFLEKVHVGDLVKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWGRINHPSEI-- 224

Query: 976  NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFE--ECDVSIGQRV 1033
              K+GQ +   +I    + +     L + +  P             +E  E    +G +V
Sbjct: 225  -LKVGQEIEVVVIDVDREKERVSLGLKQKTPNP-------------WENIEEKYPVGTKV 270

Query: 1034 TGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAVTGHVLS 1088
             G V  +    A + +   ++  + I + ++     +PSE+        +G+ V   VL 
Sbjct: 271  KGKVVNLAPYGAFIELEPGIEGLVHISEISWTQKITKPSEV------LSMGQEVEAMVLD 324

Query: 1089 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1148
            INK ++ L L L+  +    DK  ++           G IV G++ K  S  G   +++ 
Sbjct: 325  INKAEQKLSLSLKALEVNPWDKASEL--------YPPGTIVKGKV-KNFSAYGAY-IELE 374

Query: 1149 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1208
              L G +H  +L           +      P     +G+ ++ KVLEI +T +      L
Sbjct: 375  NALDGFIHVNDL----------SWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKIL---L 421

Query: 1209 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
             ++             L+ D   P K +EK        IV G V  + S G FI L+ ++
Sbjct: 422  GIKQ------------LTED---PWKEIEK--KYKVGEIVSGKVSKIASFGAFIQLADEI 464

Query: 1269 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
            D  V +S +S   V   +    +G+ V+ R++ ++   +R+ +++K 
Sbjct: 465  DGLVHISQISADRVAKVKDVLKVGQEVSARIIKIDKEERRIGLSIKA 511


>gi|403220619|dbj|BAM38752.1| uncharacterized protein TOT_010001225 [Theileria orientalis strain
           Shintoku]
          Length = 663

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 144/557 (25%), Positives = 242/557 (43%), Gaps = 79/557 (14%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 64
           G VA V    L I +   + G A+ ++  D +++++   +EDNL  + F VG  V C VL
Sbjct: 72  GSVALVTPFGLRIHIFNNIVGFAKYSELFD-LVESKSGGSEDNL-ASPFSVGSNVVCYVL 129

Query: 65  QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL---P 121
                  E+    + LSL+ SL+ K L    +  G++L A V S EDHG+ L F +    
Sbjct: 130 -------EVYHSSVALSLKPSLVNKNLRPNNLFAGLLLPATVLSQEDHGFTLSFNVNLKS 182

Query: 122 SFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT-VSKCV------- 173
           + +GF+  +   E S   VK   + +    S   T  V+  S +P+  + KCV       
Sbjct: 183 AISGFVMYD---EKSREGVKNEFIKRYPPSS---TAHVIVNSMNPERGLVKCVWPWEYKT 236

Query: 174 TKDLKGISI-DLLVPGMMVSTRVQSI----LEN-------GVMLSFLTYFTGTVDIFH-L 220
             DL   ++ D+L PG++++  V  +     EN       G  +  L   T  V   H L
Sbjct: 237 PMDLHTATVFDVLKPGLLLTAEVSEVHRLKCENSYKQPLSGYTVKCLGSLTAFVSPLHSL 296

Query: 221 QNTFPTTNWKN---DYNQHKKVN----ARILFVDPTSRAVGLTLNPYLLHNRAPP--SHV 271
           ++  P  + +    + +  K+VN    AR+++VD  +R + ++L   LL  R P   +H 
Sbjct: 297 ESYKPADSAEGSLGNLDDCKEVNDRAEARLIYVDFEARKLYVSLQWQLLKWRGPLGLAHK 356

Query: 272 KVGDIYDQSKVVR-VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKE 325
            +       KVVR +  GL L  +    P ST  + +I DV +++  K         Y  
Sbjct: 357 NLKHTVMSCKVVRSLSSGLVLEHEEEKEP-STLFFCSIKDVVDDKSLKPATILTSSTYSV 415

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 385
           G+    R+L F +L  L    LK S  +    +  +     +V+GK + + + GAIVQ  
Sbjct: 416 GTVHDCRVLDFNYLTRLTHVALKESVIKEKYASAFEFSASELVRGKTVKLVNSGAIVQLS 475

Query: 386 GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK-----S 438
             V    P+ H+++    K  + F+ G  +  RVL       R+ +T K +LV      +
Sbjct: 476 SLVYGKVPVGHLTDVPPTKVPENFQTGRNMRLRVLRFDHARNRLVLTAKPSLVNDTDPAA 535

Query: 439 KLAILSSYAEATDRLIT---HGWITKIEKHGCFVRFYNGVQGFAPR------SELGLDPG 489
           +   L    + T  +I      ++ + +     ++FY  +Q +  R       ELG+D  
Sbjct: 536 RFDHLHVGKKLTGYIINMKEKNYMDEKQNERIVIKFYGDLQTYMDRHEVERAEELGVD-- 593

Query: 490 CEPSSMYHVGQVVKCRI 506
                      VVKC +
Sbjct: 594 ------LKTDSVVKCAV 604


>gi|182414675|ref|YP_001819741.1| 30S ribosomal protein S1 [Opitutus terrae PB90-1]
 gi|177841889|gb|ACB76141.1| ribosomal protein S1 [Opitutus terrae PB90-1]
          Length = 557

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 114/192 (59%), Gaps = 16/192 (8%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V+G V+N+T+ G FI L   +D  V +S++S    V  P +    G  V   VL V+P  
Sbjct: 362  VRGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQ 421

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ + +K     T   S+I+  ++  +GD+V G + ++ S+G F+ +++  + GL H+S
Sbjct: 422  QRISLGMKQL--ATDPWSDID--AHFRIGDVVTGTVTKLTSFGAFVELKD-GIDGLVHIS 476

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1426
            ++SE+ +D ++ + + G++V  +++K+D+E+RR+ L +K++ +  +    Q+++E  + E
Sbjct: 477  QISEERIDKVKDVLKPGQQVTARVIKIDREERRLGLSIKAANYSAE----QLAAETNAFE 532

Query: 1427 AIEEVGSYNRSS 1438
            A+      NRSS
Sbjct: 533  AL------NRSS 538



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 40/290 (13%)

Query: 1117 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1176
            DN+ T   EG +  GR+   + G  GL+V IG        F    +I V  P +      
Sbjct: 92   DNILTKFPEGSVATGRVKAKVKG--GLIVSIGVD-----AFMPASHIDVQPPKN------ 138

Query: 1177 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1236
               L  Y  GQ    KVL+I+   +   ++ LS R  ++   +     L           
Sbjct: 139  ---LDQY-VGQTYDFKVLKINLERK---NIVLSRRELIEEQRTNKRRAL----------- 180

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
              ++ + P  I +G VKN+T  G FI L   +D  + ++++S G +  P +    G+ V 
Sbjct: 181  --LDSIQPGQIRRGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRISHPSEMLKQGEEVQ 237

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
              ++ V    +RV + LK +        EI+      VG  V G++  +  YG F+ IE 
Sbjct: 238  VMIIEVNREKERVSLGLKQTTKN--PWDEIDR--KYPVGAKVHGKVVNLVPYGAFVEIE- 292

Query: 1357 TNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              + GL H++E+S    +     + + G+++   +L + KE+++ISLG++
Sbjct: 293  PGVEGLVHITEMSWTKRITKPSELLKVGQELDAVVLGIQKEEQKISLGLR 342



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 150/361 (41%), Gaps = 42/361 (11%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++PG + +G V  +  FGA +   G +  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 184 IQPGQIRRGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRISHPSEMLKQGEEVQVMIIE 242

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V  + +R+++  K+T       I   Y         HG +  +  +G FV    GV+G  
Sbjct: 243 VNREKERVSLGLKQTTKNPWDEIDRKYPVGAK---VHGKVVNLVPYGAFVEIEPGVEGLV 299

Query: 480 PRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK--- 534
             +E+       +PS +  VGQ +   ++      ++I+L    ++P      D+V+   
Sbjct: 300 HITEMSWTKRITKPSELLKVGQELDAVVLGIQKEEQKISLGLRQLEPNPW---DMVRHNY 356

Query: 535 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 588
            +G+ V G V  +T     + +      +G     H++D      + H +    ++K G 
Sbjct: 357 PIGARVRGKVRNMTTYGAFIEL-----EEGIDGMVHVSDMSWTRKVNHPS---EILKKGD 408

Query: 589 EFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETG 642
           E D +++ +D +   + L  K        QL +D      +H     VV G V  +   G
Sbjct: 409 EVDAIVLDVDPQQQRISLGMK--------QLATDPWSDIDAHFRIGDVVTGTVTKLTSFG 460

Query: 643 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
            FV     + G    S+  + +   +      GQ V + ++ ++ E  R+ LS+K +  S
Sbjct: 461 AFVELKDGIDGLVHISQISEERIDKVKDVLKPGQQVTARVIKIDREERRLGLSIKAANYS 520

Query: 703 S 703
           +
Sbjct: 521 A 521



 Score = 57.8 bits (138), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 116/568 (20%), Positives = 226/568 (39%), Gaps = 85/568 (14%)

Query: 436 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 495
           V   L   SS+ +  +  I  G IT+I ++   V      +G  P +E  +D G      
Sbjct: 4   VMQDLLAQSSFDKLKEGSIVPGVITEIRQNEVVVDIGGKSEGLVPANEF-IDIGE----- 57

Query: 496 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVV 552
             VG  ++  +           LSF +   + + D+++     GS+ +G V       ++
Sbjct: 58  LQVGSTIEVLVQKLEGKDGAPILSFDLAEQKKNWDNILTKFPEGSVATGRVKAKVKGGLI 117

Query: 553 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 612
           V +    +    +P  H+   ++    +   +   Y+F ++L ++ E  N++LS +  LI
Sbjct: 118 VSIGVDAF----MPASHI--DVQPPKNLDQYVGQTYDF-KVLKINLERKNIVLS-RRELI 169

Query: 613 NSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 670
              +     A    I P  +  G V NI + G F+   G + G    +    G+ +  S+
Sbjct: 170 EEQRTNKRRALLDSIQPGQIRRGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRISHPSE 228

Query: 671 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 730
               G+ V+  I++VN E  R++L LKQ+  +  D         ++ K            
Sbjct: 229 MLKQGEEVQVMIIEVNREKERVSLGLKQTTKNPWDE--------IDRK------------ 268

Query: 731 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA------GATVESGS 784
                  + +G+ + GKV     +G  V  E   +    IT              ++ G 
Sbjct: 269 -------YPVGAKVHGKVVNLVPYGAFVEIEPGVEGLVHITEMSWTKRITKPSELLKVGQ 321

Query: 785 VIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 844
            + A +L + K E+ + L L+ +  + +     N     + R +  +       T  A +
Sbjct: 322 ELDAVVLGIQKEEQKISLGLRQLEPNPWDMVRHNYPIGARVRGKVRN-----MTTYGAFI 376

Query: 845 EIVKENYLVLSLPEYNHSI-GYASVSDYN-TQKF--PQKQFLNGQSVIATVMALPSSSTA 900
           E+                I G   VSD + T+K   P +    G  V A V+ +      
Sbjct: 377 EL-------------EEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQQ- 422

Query: 901 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 960
            R+ L +K ++    S        + + +G +V   +T++      ++   G  G +HI+
Sbjct: 423 -RISLGMKQLATDPWSDI-----DAHFRIGDVVTGTVTKLTSFGAFVELKDGIDGLVHIS 476

Query: 961 EVNDDKSNVVENLFSNFKIGQTVTARII 988
           ++++++ + V+++    K GQ VTAR+I
Sbjct: 477 QISEERIDKVKDV---LKPGQQVTARVI 501



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 110/483 (22%), Positives = 186/483 (38%), Gaps = 108/483 (22%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV 422
           G V  G+V A    G IV    GV A  P  H+     V+P K     VG    F+VL +
Sbjct: 101 GSVATGRVKAKVKGGLIVSI--GVDAFMPASHID----VQPPKNLDQYVGQTYDFKVLKI 154

Query: 423 KSKRITVT-HKKTLVKS-----KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
             +R  +   ++ L++      + A+L S        I  G +  I   G F+   +G+ 
Sbjct: 155 NLERKNIVLSRRELIEEQRTNKRRALLDSIQPGQ---IRRGVVKNITDFGAFIDL-DGMD 210

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK-- 534
           G    +++       PS M   G+ V+  I+       R++L  + + T+   D++ +  
Sbjct: 211 GLLHITDMSWGRISHPSEMLKQGEEVQVMIIEVNREKERVSLG-LKQTTKNPWDEIDRKY 269

Query: 535 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM---KSVIKP---- 586
            +G+ V G V  + P    V +            E   + L H T M   K + KP    
Sbjct: 270 PVGAKVHGKVVNLVPYGAFVEI------------EPGVEGLVHITEMSWTKRITKPSELL 317

Query: 587 --GYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD-ASHIHP-NSVVHGYVCNIIET 641
             G E D +++ +  E   + L  +    N     P D   H +P  + V G V N+   
Sbjct: 318 KVGQELDAVVLGIQKEEQKISLGLRQLEPN-----PWDMVRHNYPIGARVRGKVRNMTTY 372

Query: 642 GCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYV---------GQSVRSNILDVNSETG 690
           G F+             + +DG    +D+S T  V         G  V + +LDV+ +  
Sbjct: 373 GAFIEL----------EEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQQ 422

Query: 691 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 750
           RI+L +KQ   ++   S +  HF                          IG V+ G V +
Sbjct: 423 RISLGMKQ--LATDPWSDIDAHFR-------------------------IGDVVTGTVTK 455

Query: 751 SNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLS 803
              FG  V  ++  D  G +   Q++   ++        G  + A ++ + + ER + LS
Sbjct: 456 LTSFGAFVELKDGID--GLVHISQISEERIDKVKDVLKPGQQVTARVIKIDREERRLGLS 513

Query: 804 LKT 806
           +K 
Sbjct: 514 IKA 516



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            L ++  G I  G +K +  +G FI ++  +  GL H++++S   + +   + + GE+V+V
Sbjct: 181  LDSIQPGQIRRGVVKNITDFGAFIDLDGMD--GLLHITDMSWGRISHPSEMLKQGEEVQV 238

Query: 1389 KILKVDKEKRRISLGMKSSYFKNDADNL 1416
             I++V++EK R+SLG+K +  KN  D +
Sbjct: 239  MIIEVNREKERVSLGLKQTT-KNPWDEI 265



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 123/545 (22%), Positives = 216/545 (39%), Gaps = 84/545 (15%)

Query: 5   GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 64
           GV+ E+ + ++V+ + G   GL  A + +D          E         VG  +  +V 
Sbjct: 25  GVITEIRQNEVVVDIGGKSEGLVPANEFID--------IGE-------LQVGSTIEVLVQ 69

Query: 65  QLD-DDKKEIGKRKIWLSLRLSLLYKGLS--LETVQEGMVLTAYVKSIEDHGYILHFGLP 121
           +L+  D   I      LS  L+   K     L    EG V T  VK+    G I+  G+ 
Sbjct: 70  KLEGKDGAPI------LSFDLAEQKKNWDNILTKFPEGSVATGRVKAKVKGGLIVSIGVD 123

Query: 122 SFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 173
           +F   +P       S IDV+P        G      V  I+  RK + LS   + + +  
Sbjct: 124 AF---MP------ASHIDVQPPKNLDQYVGQTYDFKVLKINLERKNIVLSRR-ELIEEQR 173

Query: 174 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN------TFPTT 227
           T   + + +D + PG +    V++I + G  +       G   + H+ +      + P+ 
Sbjct: 174 TNKRRAL-LDSIQPGQIRRGVVKNITDFGAFIDL----DGMDGLLHITDMSWGRISHPSE 228

Query: 228 NWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPS----HVKVGDIYD 278
             K    Q ++V   I+ V+     V L L     NP+   +R  P     H KV ++  
Sbjct: 229 MLK----QGEEVQVMIIEVNREKERVSLGLKQTTKNPWDEIDRKYPVGAKVHGKVVNLVP 284

Query: 279 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 338
               V ++ G+  L+ I  T +S    +T          K  +  K G  +   +LG + 
Sbjct: 285 YGAFVEIEPGVEGLVHI--TEMSWTKRIT----------KPSELLKVGQELDAVVLGIQK 332

Query: 339 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 398
            E   +  L+            +   G  V+GKV  + ++GA ++   G+  +  +  MS
Sbjct: 333 EEQKISLGLRQLEPNPWDMVRHNYPIGARVRGKVRNMTTYGAFIELEEGIDGMVHVSDMS 392

Query: 399 EFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 455
               V  P +  K G E+   VL V  + +RI++  K+ L     + + ++    D  + 
Sbjct: 393 WTRKVNHPSEILKKGDEVDAIVLDVDPQQQRISLGMKQ-LATDPWSDIDAHFRIGD--VV 449

Query: 456 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515
            G +TK+   G FV   +G+ G    S++  +   +   +   GQ V  R++      RR
Sbjct: 450 TGTVTKLTSFGAFVELKDGIDGLVHISQISEERIDKVKDVLKPGQQVTARVIKIDREERR 509

Query: 516 INLSF 520
           + LS 
Sbjct: 510 LGLSI 514


>gi|183601485|ref|ZP_02962855.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            HN019]
 gi|219683973|ref|YP_002470356.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            AD011]
 gi|241191015|ref|YP_002968409.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            Bl-04]
 gi|241196421|ref|YP_002969976.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis DSM
            10140]
 gi|384194007|ref|YP_005579753.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            BLC1]
 gi|384195573|ref|YP_005581318.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis V9]
 gi|387820881|ref|YP_006300924.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            B420]
 gi|387822557|ref|YP_006302506.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            Bi-07]
 gi|423679541|ref|ZP_17654417.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis BS
            01]
 gi|183219091|gb|EDT89732.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            HN019]
 gi|219621623|gb|ACL29780.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            AD011]
 gi|240249407|gb|ACS46347.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            Bl-04]
 gi|240250975|gb|ACS47914.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis DSM
            10140]
 gi|295794004|gb|ADG33539.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis V9]
 gi|345282866|gb|AEN76720.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            BLC1]
 gi|366041185|gb|EHN17689.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis BS
            01]
 gi|386653582|gb|AFJ16712.1| SSU ribosomal protein S1p [Bifidobacterium animalis subsp. lactis
            B420]
 gi|386655165|gb|AFJ18294.1| SSU ribosomal protein S1p [Bifidobacterium animalis subsp. lactis
            Bi-07]
          Length = 493

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 171/380 (45%), Gaps = 52/380 (13%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            G  V G V KVD++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKVDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVKVGDTIEALVV 91

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1148
             KE K  RL+L   +        DI        I E D +V G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKENDGVVEGTVIEAVKG--GLIVDIG 143

Query: 1149 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1208
               +      E++ +    P  G               Q +K KVLE+ +      +V L
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG---------------QKIKAKVLELDKNRN---NVVL 185

Query: 1209 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
            S R  L+   S                   +  L    I +G V ++ + G F+ L   +
Sbjct: 186  SRRQYLEETQSEVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GV 231

Query: 1269 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1328
            D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK +      +     
Sbjct: 232  DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQR 286

Query: 1329 LSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
             +  HV G IV G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + GE+V 
Sbjct: 287  FARTHVPGQIVRGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKPGEEVF 345

Query: 1388 VKILKVDKEKRRISLGMKSS 1407
            VK++ VD ++RRISL +K +
Sbjct: 346  VKVIDVDLDRRRISLSLKQA 365



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 21/257 (8%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 507
           +  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +++      
Sbjct: 125 VVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKVLELDKNR 180

Query: 508 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 568 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
            P  +V G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDV 351

Query: 686 NSETGRITLSLKQSCCS 702
           + +  RI+LSLKQ+  S
Sbjct: 352 DLDRRRISLSLKQANDS 368



 Score = 45.8 bits (107), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDDVVKVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKENDGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KVLELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G ++ GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVRGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPNSE 374


>gi|408501167|ref|YP_006865086.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
 gi|408465991|gb|AFU71520.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
          Length = 501

 Score = 95.1 bits (235), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 186/406 (45%), Gaps = 58/406 (14%)

Query: 1010 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1063
             + V++IGS+  F +  D +I     G  V G V K+D++  LL I    +  +     +
Sbjct: 10   QVAVNDIGSEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----PS 65

Query: 1064 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1123
             E S  ++      +    T   L + KE K  RL+L   +        DI        I
Sbjct: 66   RELSIKKDVDPDDVVQVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------I 119

Query: 1124 HEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
             E D +V G + + + G  GL+V IG   +      E++ +                LS 
Sbjct: 120  KEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVR--------------DLSP 163

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            Y  GQ +K K+LE+ +      +V LS R  L+   S                   +  L
Sbjct: 164  YI-GQKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------MAQL 206

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V
Sbjct: 207  KKGQIREGTVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDV 265

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVG 1361
            +   +R+ ++LK +      +      +  HV G IV G++ ++  +G+F+++E+  + G
Sbjct: 266  DMDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFVSVED-GIEG 319

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L H+SEL+  HV+N ET+ + GE++ VK++ VD ++RRISL +K +
Sbjct: 320  LVHISELANRHVENPETVVKQGEEIFVKVIDVDLDRRRISLSLKQA 365



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 124/288 (43%), Gaps = 23/288 (7%)

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFMAQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  G V  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGTVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G FV     + G 
Sbjct: 264 DVDMDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFVSVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
              S+  +    +       G+ +   ++DV+ +  RI+LSLKQ+  S
Sbjct: 321 VHISELANRHVENPETVVKQGEEIFVKVIDVDLDRRRISLSLKQADDS 368



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 38/222 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++L LD   +N++LS +  L  +  ++     + +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQYLEETQSEVRETFMAQLKKGQIREGTVSSIVNFGAFVD-LGG 230

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDMDRERISLSLK-ATQEDPWQRFAR 289

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
            H                          + G +++GKV +   FGV VS E+   + G +
Sbjct: 290 TH--------------------------VPGQIVKGKVTKIVQFGVFVSVEDG--IEGLV 321

Query: 771 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 805
              +LA   VE+       G  I   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKQGEEIFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 19/208 (9%)

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 291
           +K+ A+IL +D     V L+   YL   ++       + +K G I + +    V+   G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFMAQLKKGQIREGTVSSIVN--FGA 224

Query: 292 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 348
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDMDRERISLSLKATQ 280

Query: 349 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 408
              ++    TH    PG +VKGKV  +  FG  V    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFVSVEDGIEGLVHISELANRHVENPETV 337

Query: 409 FKVGAELVFRVLGV--KSKRITVTHKKT 434
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKQGEEIFVKVIDVDLDRRRISLSLKQA 365


>gi|188586255|ref|YP_001917800.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
            thermophilus JW/NM-WN-LF]
 gi|179350942|gb|ACB85212.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
            thermophilus JW/NM-WN-LF]
          Length = 705

 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 105/194 (54%), Gaps = 6/194 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +E ++   IV G VK +T  G FI +   +D    +S +S   ++ PE E   G+ V  +
Sbjct: 494  METITEGDIVDGTVKRLTDFGAFIDIG-GIDGLCHISQISHSRIDHPESELETGENVKVK 552

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VLS++P ++R+ +++K +            +     GDIV G++ R  ++G FI I    
Sbjct: 553  VLSLDPENERISLSIKEAQPDPFE----TFMKQYKSGDIVQGKVVRTVNFGAFIEI-TPG 607

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GLCH+S+LS+DHV   + +   G++V VKIL +D +++++SL +K +  K+  +  Q 
Sbjct: 608  VEGLCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDDQQKKVSLSIKEAQGKSKKEQEQE 667

Query: 1419 SSEEESDEAIEEVG 1432
               +  D   EE G
Sbjct: 668  EFAKYQDSQEEEEG 681



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 44/249 (17%)

Query: 1297 GRVLSVEPLS---KRVEVTLKTSDSRTASQSEINN--LSNLHVGDIVIGQIKRVESYGLF 1351
            G  L ++P+     R ++ L   +     Q E  N  +  +  GDIV G +KR+  +G F
Sbjct: 457  GEELRLKPIELDRSRNKIVLSQKNILEQEQEEKKNKTMETITEGDIVDGTVKRLTDFGAF 516

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS---- 1407
            I I    + GLCH+S++S   +D+ E+    GE VKVK+L +D E  RISL +K +    
Sbjct: 517  IDI--GGIDGLCHISQISHSRIDHPESELETGENVKVKVLSLDPENERISLSIKEAQPDP 574

Query: 1408 -------YFKND------ADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1454
                   Y   D         +   +  E    +E  G  + S L ++     QD+  E 
Sbjct: 575  FETFMKQYKSGDIVQGKVVRTVNFGAFIEITPGVE--GLCHISQLSDDHVAKTQDVVNE- 631

Query: 1455 EDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE 1514
               G  V  +I          +++DD+Q  +   I + QG + + +  +E     AK ++
Sbjct: 632  ---GDQVTVKI----------LSIDDQQKKVSLSIKEAQGKSKKEQEQEE----FAKYQD 674

Query: 1515 KEEREQEIR 1523
             +E E+ ++
Sbjct: 675  SQEEEEGVK 683



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 6/177 (3%)

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
           IL+    E    T   +  G +V G V  +  FGA +   GG+  LC +  +S   I  P
Sbjct: 481 ILEQEQEEKKNKTMETITEGDIVDGTVKRLTDFGAFIDI-GGIDGLCHISQISHSRIDHP 539

Query: 406 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
             + + G  +  +VL +  +++RI+++ K+         +  Y       I  G + +  
Sbjct: 540 ESELETGENVKVKVLSLDPENERISLSIKEAQPDPFETFMKQYKSGD---IVQGKVVRTV 596

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             G F+    GV+G    S+L  D   +   + + G  V  +I+S     ++++LS 
Sbjct: 597 NFGAFIEITPGVEGLCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDDQQKKVSLSI 653



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 134/305 (43%), Gaps = 52/305 (17%)

Query: 521 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATV 579
           +MK T  S D L + G +V G V  VT +  ++ V   GY  +G++P   +   ++    
Sbjct: 312 LMKATEDSADKLDR-GQVVKGKVVKVTEDEAMIDV---GYKFEGSVPVNEMP--IKEGES 365

Query: 580 MKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 638
           ++ ++  G E D +++ +D+E   L+LS K++  +  +Q       +  +  +   V   
Sbjct: 366 LEDLLSEGDEIDVKVVKVDDEEGQLILSKKWA--DKDKQWEQLEQLMENDEEIKAQVTEE 423

Query: 639 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
           ++ G  V  LG+L GF P S        DLSK  YVG+ +R   ++++    +I LS K 
Sbjct: 424 VKGGLVVD-LGQLQGFIPASHVDIHYVPDLSK--YVGEELRLKPIELDRSRNKIVLSQKN 480

Query: 699 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 758
                          +LE++    Q  K N    K +E    G +++G V    DFG  +
Sbjct: 481 ---------------ILEQE----QEEKKN----KTMETITEGDIVDGTVKRLTDFGAFI 517

Query: 759 SFEEHSDVYGF--------ITHHQL--AGATVESGSVIQAAILDVAKAERLVDLSLKTVF 808
                 D+ G         I+H ++    + +E+G  ++  +L +      + LS+K   
Sbjct: 518 ------DIGGIDGLCHISQISHSRIDHPESELETGENVKVKVLSLDPENERISLSIKEAQ 571

Query: 809 IDRFR 813
            D F 
Sbjct: 572 PDPFE 576



 Score = 47.0 bits (110), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 14/171 (8%)

Query: 274 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 333
           GDI D +  V+     G  +DI            IS ++   +   E + + G  V+V++
Sbjct: 500 GDIVDGT--VKRLTDFGAFIDIGGID----GLCHISQISHSRIDHPESELETGENVKVKV 553

Query: 334 LGFR-HLEGLATGILKA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 390
           L      E ++  I +A    FE  +  +   K G +V+GKV+   +FGA ++   GV+ 
Sbjct: 554 LSLDPENERISLSIKEAQPDPFETFMKQY---KSGDIVQGKVVRTVNFGAFIEITPGVEG 610

Query: 391 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 439
           LC +  +S+  + K       G ++  ++L +  + K+++++ K+   KSK
Sbjct: 611 LCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDDQQKKVSLSIKEAQGKSK 661


>gi|402299919|ref|ZP_10819481.1| 30S ribosomal protein S1 [Bacillus alcalophilus ATCC 27647]
 gi|401724905|gb|EJS98228.1| 30S ribosomal protein S1 [Bacillus alcalophilus ATCC 27647]
          Length = 383

 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 186/382 (48%), Gaps = 54/382 (14%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
            + +G  ++G + KV+++ A + +        + +D     SEL       H+ K     V
Sbjct: 15   IVVGDVISGKITKVEDKQAFVDVG-------YKVDGVIPISELS----SLHVEK--VSDV 61

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGLV 1144
            LS++ E +L  L L   +  +S + V       ++Q     G+++   I+ ++ G  GLV
Sbjct: 62   LSVDDEVELKVLKLEDDELVLSKRAVQAEKAWVSLQNSFETGEVIETIIADVVKG--GLV 119

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V +G  + G +            P S  +    +  S Y +G+ ++ KV+E+ +      
Sbjct: 120  VDLG--VRGFI------------PASLVERHYVEDFSDY-KGKTLRLKVVELDKDNNKLI 164

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
               LS R  LD            +V+   KHL  ++ + P M+++G V+ +T+ G F+ L
Sbjct: 165  ---LSQRVVLD-----------EEVEKQKKHL--LQGIEPGMVIEGTVQRLTNFGAFVDL 208

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S L+   VESP      G  V  +VLSV+  S+RV +++K  D+      
Sbjct: 209  G-GVDGLVHISQLAHHRVESPSDVVSEGDKVKVKVLSVDTESERVSLSIK--DTLPGPWE 265

Query: 1325 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
            +I     +  GD+V G +KR+ S+G FI + +  + GL H+S+++  H+     +   GE
Sbjct: 266  KIEG--TISQGDVVSGTVKRLVSFGAFIEVAD-GVEGLVHISQIANRHIGTPSEVLTEGE 322

Query: 1385 KVKVKILKVDKEKRRISLGMKS 1406
            KV+ K+L V+ +++RISL +++
Sbjct: 323  KVQAKVLDVNLDEKRISLSIRA 344



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++PGMV++G V  + +FGA V   GGV  L  +  ++   +  P      G ++  +VL 
Sbjct: 186 IEPGMVIEGTVQRLTNFGAFVDL-GGVDGLVHISQLAHHRVESPSDVVSEGDKVKVKVLS 244

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V  +S+R++++ K TL      I  + ++     +  G + ++   G F+   +GV+G  
Sbjct: 245 VDTESERVSLSIKDTLPGPWEKIEGTISQGD---VVSGTVKRLVSFGAFIEVADGVEGLV 301

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             S++       PS +   G+ V+ +++      +RI+LS 
Sbjct: 302 HISQIANRHIGTPSEVLTEGEKVQAKVLDVNLDEKRISLSI 342



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            L  +  G ++ G ++R+ ++G F+ +   +  GL H+S+L+   V++   +   G+KVKV
Sbjct: 183  LQGIEPGMVIEGTVQRLTNFGAFVDLGGVD--GLVHISQLAHHRVESPSDVVSEGDKVKV 240

Query: 1389 KILKVDKEKRRISLGMKSS 1407
            K+L VD E  R+SL +K +
Sbjct: 241  KVLSVDTESERVSLSIKDT 259



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 158/395 (40%), Gaps = 72/395 (18%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 509
           +  G ITK+E    FV     V G  P SEL      + S +  V   V+ +++      
Sbjct: 20  VISGKITKVEDKQAFVDVGYKVDGVIPISELSSLHVEKVSDVLSVDDEVELKVLKLEDDE 79

Query: 510 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 569
           +  S+R   +   +   VS  +  + G ++  ++  V    +VV +  +G+   ++   H
Sbjct: 80  LVLSKR---AVQAEKAWVSLQNSFETGEVIETIIADVVKGGLVVDLGVRGFIPASLVERH 136

Query: 570 LADHL---EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-- 624
             +     +  T+   V++          LD +++ L+LS +  L    +++     H  
Sbjct: 137 YVEDFSDYKGKTLRLKVVE----------LDKDNNKLILSQRVVL---DEEVEKQKKHLL 183

Query: 625 --IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
             I P  V+ G V  +   G FV  LG + G    S+    +    S     G  V+  +
Sbjct: 184 QGIEPGMVIEGTVQRLTNFGAFVD-LGGVDGLVHISQLAHHRVESPSDVVSEGDKVKVKV 242

Query: 683 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW--VEGFII 740
           L V++E+ R++LS+K +                                  W  +EG I 
Sbjct: 243 LSVDTESERVSLSIKDTLPGP------------------------------WEKIEGTIS 272

Query: 741 -GSVIEGKVHESNDFGVVVSFEEHSD-VYGFITHHQLAGATVES-------GSVIQAAIL 791
            G V+ G V     FG   +F E +D V G +   Q+A   + +       G  +QA +L
Sbjct: 273 QGDVVSGTVKRLVSFG---AFIEVADGVEGLVHISQIANRHIGTPSEVLTEGEKVQAKVL 329

Query: 792 DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 826
           DV   E+ + LS++ +  +   +  ++ ++ K++ 
Sbjct: 330 DVNLDEKRISLSIRALIEEDVEDHYADYESHKEEE 364



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 1324 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
            SE+  + ++ VGD++ G+I +VE    F+ +    + G+  +SELS  HV+ +  +    
Sbjct: 7    SEVAGMKSIVVGDVISGKITKVEDKQAFVDV-GYKVDGVIPISELSSLHVEKVSDVLSVD 65

Query: 1384 EKVKVKILKVDKEKRRIS 1401
            ++V++K+LK++ ++  +S
Sbjct: 66   DEVELKVLKLEDDELVLS 83


>gi|386867152|ref|YP_006280146.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. animalis
            ATCC 25527]
 gi|385701235|gb|AFI63183.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. animalis
            ATCC 25527]
          Length = 493

 Score = 94.7 bits (234), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 171/380 (45%), Gaps = 52/380 (13%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            G  V G V KVD++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKVDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVKVGDTIEALVV 91

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1148
             KE K  RL+L   +        DI        I E D +V G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKEDDGVVEGTVIEAVKG--GLIVDIG 143

Query: 1149 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1208
               +      E++ +    P  G               Q +K KVLE+ +      +V L
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG---------------QKIKAKVLELDKNRN---NVVL 185

Query: 1209 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
            S R  L+   S                   +  L    I +G V ++ + G F+ L   +
Sbjct: 186  SRRQYLEETQSEVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GV 231

Query: 1269 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1328
            D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK +      +     
Sbjct: 232  DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQR 286

Query: 1329 LSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
             +  HV G IV G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + GE+V 
Sbjct: 287  FARTHVPGQIVRGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKPGEEVF 345

Query: 1388 VKILKVDKEKRRISLGMKSS 1407
            VK++ VD ++RRISL +K +
Sbjct: 346  VKVIDVDLDRRRISLSLKQA 365



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 125/288 (43%), Gaps = 23/288 (7%)

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKE--DDGVVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + +    + S   ++GQ +K +++      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKVLELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVRGKVTKIVQFGVFISVEDGIEGL 320

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDS 368



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDDVVKVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEDDGVVEGTVIEAVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KVLELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 789
             + G ++ GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVRGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 41.6 bits (96), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPNSE 374


>gi|283458186|ref|YP_003362803.1| 30S ribosomal protein S1 [Rothia mucilaginosa DY-18]
 gi|283134218|dbj|BAI64983.1| ribosomal protein S1 [Rothia mucilaginosa DY-18]
          Length = 484

 Score = 94.0 bits (232), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 191/416 (45%), Gaps = 66/416 (15%)

Query: 1004 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1053
            +S     + +++IG +  F E  + +I     G  V+G V K+D++  LL I       +
Sbjct: 1    MSTNIPQVAINDIGDEQAFLEAVEQTIKVFNDGDLVSGQVVKIDHDEVLLDIGYKTEGVI 60

Query: 1054 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1113
             ++   +    +PSE+ E      +G  V   VL+  KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDIDPSEVVE------LGSEVEALVLT--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1114 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            I        + E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------VKENDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
                          Q ++ K++E+ +      +V LS R+ L+   S   S         
Sbjct: 164  --------------QQIEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSSF------- 199

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
                  + +L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 200  ------LNELEKGQVREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLF 1351
            + V   VL V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F
Sbjct: 253  QPVTVEVLEVDLDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAF 307

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +E+  + GL H+SEL+  HVD  E +   GE+V VKI+ +D ++RRISL +K +
Sbjct: 308  VRVED-GIEGLVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           ++++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   V
Sbjct: 201 NELEKGQVREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEV 259

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G
Sbjct: 260 LEVDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEG 316

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL          +  VG+ V  +I+      RRI+LS 
Sbjct: 317 LVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSL 359



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 157/350 (44%), Gaps = 35/350 (10%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G+V+ +D    ++      + + P   +S    + P +  ++G+E+   VL  + 
Sbjct: 33  GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVELGSEVEALVLTKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKVKE-NDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R S  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELE 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P    + L
Sbjct: 205 KGQVREGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQP-VTVEVL 260

Query: 594 LV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
            V LD E  +L L A        Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 261 EVDLDRERVSLSLKA-------TQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 651 LTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+ +  +  DL+ +   VG+ V   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISE-LATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362


>gi|294790747|ref|ZP_06755905.1| ribosomal protein S1 [Scardovia inopinata F0304]
 gi|294458644|gb|EFG26997.1| ribosomal protein S1 [Scardovia inopinata F0304]
          Length = 494

 Score = 94.0 bits (232), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V K+D +  LL I       + ++   +    +P ++        +G  +   
Sbjct: 36   GDLVEGTVVKIDRDEVLLDIGYKTEGVIPSKELSIKKDVDPEDV------VQVGDTI--E 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1144
             L + KE K  RL+L   +        D+        I E D +V G + + + G  GL+
Sbjct: 88   ALVVTKEDKDGRLILSKKRAQYERAWGDVEK------IKEADGVVEGTVIETVKG--GLI 139

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V IG   +      E++ +    P  G               Q ++ K+LE+ +      
Sbjct: 140  VDIGLRGFLPASLVEMRRVRDLAPYIG---------------QRIQAKILELDKNRN--- 181

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            +V LS R  L+   S                   +  L    I +G + ++ + G F+ L
Sbjct: 182  NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIREGTISSIVNFGAFVDL 228

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK++      + 
Sbjct: 229  G-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKST-----QED 282

Query: 1325 EINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  HV G IV G++ ++  +G+F+++++  + GL H+SEL+  HVDN ET+ + G
Sbjct: 283  PWQRFARTHVPGQIVKGKVTKIVQFGVFVSVDD-GIEGLIHISELANRHVDNPETVVKPG 341

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            E+V VK++ VD ++RRISL +K +
Sbjct: 342  EEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G + +G + ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGTISSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +RI+++ K T          ++       I  G +TKI + G FV   +G++G
Sbjct: 263 LDVDLDRERISLSLKSTQEDPWQRFARTHVPGQ---IVKGKVTKIVQFGVFVSVDDGIEG 319

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LIHISELANRHVDNPETVVKPGEEVFVKVIDVDLDRRRISLSL 362



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI++    +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDRDEVLLDIGYKTEGVIPSKELSIKKDVDPEDVVQVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKDGRLILSKKRAQYERAWGDVEKIKEADGVVEGTVIETVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 617
           +G+   ++        L  A  +   I+      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--APYIGQRIQA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 618 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +  +  S +    +  G + +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGTISSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +LDV+ +  RI+LSLK S        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-STQEDPWQRFARTH------------------------ 291

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG-------ATVESGSVIQAA 789
             + G +++GKV +   FGV VS ++   + G I   +LA          V+ G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFVSVDDG--IEGLIHISELANRHVDNPETVVKPGEEVFVK 347

Query: 790 ILDVAKAERLVDLSLK 805
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 149/350 (42%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P    +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDRDEVLLDIGYKTEGVIPSKELSIKKDVDPEDVVQVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGDVEKIKEADG--VVEGTVIETVKGGLIVDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    +K
Sbjct: 152 LVEMRRVRDLAP----YIGQRIQAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLK 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  G +  +      V +   G   G I    L+  H++H +    V+K G +   +
Sbjct: 208 KGQIREGTISSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G FV     + 
Sbjct: 262 VLDVDLDRERISLSLKSTQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFVSVDDGIE 318

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S
Sbjct: 319 GLIHISELANRHVDNPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDS 368


>gi|288556073|ref|YP_003428008.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
 gi|288547233|gb|ADC51116.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
          Length = 385

 Score = 94.0 bits (232), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 196/419 (46%), Gaps = 65/419 (15%)

Query: 1015 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1074
            E+ ++ L E   +++G  VTG V KV+++ AL+ +        F ++     SEL     
Sbjct: 4    EMNNEQLAEMKSLAVGDVVTGKVTKVEDKQALVDVG-------FKVEGIVPISELS---- 52

Query: 1075 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGR 1132
              H+ K     VLS++ E K+  L L   +  +S + V      D ++    +G+I+   
Sbjct: 53   SLHVEK--VSDVLSVDDELKMKILKLEDDELILSKRAVQAEKAWDQLRKQQEKGEIITAE 110

Query: 1133 ISKILSGVGGLVVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            +++++ G  GLVV +G     P      HF E                     S Y +G+
Sbjct: 111  VAEVVKG--GLVVDVGVRGFIPASLVERHFVE-------------------DFSDY-KGR 148

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             ++ KV E+ +         LS R+ LD        ++             ++ L     
Sbjct: 149  ELRLKVEELDQENNKLI---LSQRAVLDAELEEKKKNV-------------LQSLKSGDT 192

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V+G V+ +T+ G F+ +   +D  V +S L+   VE+P      G  V  +VLSV+P S+
Sbjct: 193  VEGTVQRLTNFGAFVDVG-GVDGLVHISQLAHHRVETPSDIVNEGDKVKVKVLSVDPDSE 251

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
            RV +++K  D++     E+     +  GD++ G ++R+ S+G F+ +    + GL H+S+
Sbjct: 252  RVSLSIK--DTQPGPWEEV--AGQISTGDVIEGTVRRLVSFGAFVEV-APGVEGLVHISQ 306

Query: 1368 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1426
            ++  H+     +   GEKV+VK+L V+ + +RISL ++    K+D ++   ++ E + E
Sbjct: 307  IANRHIGTPSEVLTEGEKVEVKVLDVNLDDKRISLSIR-ELLKDDTNDGDYAAYEANKE 364



 Score = 44.7 bits (104), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K G  V+G V  + +FGA V   GGV  L  +  ++   +  P      G ++  +VL 
Sbjct: 187 LKSGDTVEGTVQRLTNFGAFVDV-GGVDGLVHISQLAHHRVETPSDIVNEGDKVKVKVLS 245

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V   S+R++++ K T       +    +      +  G + ++   G FV    GV+G  
Sbjct: 246 VDPDSERVSLSIKDTQPGPWEEVAGQISTGD---VIEGTVRRLVSFGAFVEVAPGVEGLV 302

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             S++       PS +   G+ V+ +++      +RI+LS 
Sbjct: 303 HISQIANRHIGTPSEVLTEGEKVEVKVLDVNLDDKRISLSI 343


>gi|337747030|ref|YP_004641192.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            KNP414]
 gi|379720890|ref|YP_005313021.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            3016]
 gi|386723496|ref|YP_006189822.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            K02]
 gi|336298219|gb|AEI41322.1| RNA binding S1 domain protein [Paenibacillus mucilaginosus KNP414]
 gi|378569562|gb|AFC29872.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            3016]
 gi|384090621|gb|AFH62057.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            K02]
          Length = 414

 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 178/383 (46%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ-----RRFHIGKAVTG 1084
            G  V G V KVD + A + +        +  D      EL   Q     +   IG+ +  
Sbjct: 33   GDIVKGKVIKVDADQAFVDVG-------YKYDGVVPVKELSSVQVDDASQNVEIGQEIEL 85

Query: 1085 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1144
             VL+I+  ++ L L  R   DG      + S D +   +    I+  ++++++ G  GLV
Sbjct: 86   KVLTIDDHREKLVLSKRAV-DG------EKSWDKLAADMENKTILEAKVAEVVKG--GLV 136

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V +G  L G V  + ++   V D             S Y +G+ ++ +V E+ R      
Sbjct: 137  VDVG--LRGFVPASMVERTFVED------------FSDY-KGRTLRLRVKEMDRE---KN 178

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
             V LS +  LD              +  GK  E +  LS   ++ G V+ +T  G F+ +
Sbjct: 179  KVILSQKDVLDE-------------EFEGKKKEVLAKLSVGQVLDGTVQRLTQFGAFVDI 225

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S ++  +VE P +    G  V  +VL V+P ++R+ +++K +      Q 
Sbjct: 226  G-GVDGLVHISEMAWHHVEKPSEVVKEGDKVQVQVLKVDPENERISLSIKATQPGPWQQV 284

Query: 1325 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                   ++ GDIV G +KR+  +G FI +    + GL H+S+++  HV   + + + GE
Sbjct: 285  ----AGRINTGDIVTGTVKRLVQFGAFIEV-APGVEGLVHISQIAHRHVATPQEVLKEGE 339

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +VKVK+L ++ +++RISL +K +
Sbjct: 340  EVKVKVLDMNPDEKRISLSIKET 362



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 150/349 (42%), Gaps = 27/349 (7%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K G +VKGKVI VD+  A V        + P+  +S  ++    +  ++G E+  +VL 
Sbjct: 30  IKKGDIVKGKVIKVDADQAFVDVGYKYDGVVPVKELSSVQVDDASQNVEIGQEIELKVLT 89

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           +   R  +   K  V  + +     A+  ++ I    + ++ K G  V    G++GF P 
Sbjct: 90  IDDHREKLVLSKRAVDGEKSWDKLAADMENKTILEAKVAEVVKGGLVVDV--GLRGFVPA 147

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPTRVSEDDLV 533
           S +      E  S Y  G+ ++ R+        ++ LS        F  K   V    L 
Sbjct: 148 S-MVERTFVEDFSDYK-GRTLRLRVKEMDREKNKVILSQKDVLDEEFEGKKKEV----LA 201

Query: 534 KL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 591
           KL  G ++ G V  +T     V +   G   G +    +A H  H      V+K G +  
Sbjct: 202 KLSVGQVLDGTVQRLTQFGAFVDI---GGVDGLVHISEMAWH--HVEKPSEVVKEGDKVQ 256

Query: 592 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
            Q+L +D E+  + LS K +     QQ+   A  I+   +V G V  +++ G F+     
Sbjct: 257 VQVLKVDPENERISLSIKATQPGPWQQV---AGRINTGDIVTGTVKRLVQFGAFIEVAPG 313

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+      A   +    G+ V+  +LD+N +  RI+LS+K++
Sbjct: 314 VEGLVHISQIAHRHVATPQEVLKEGEEVKVKVLDMNPDEKRISLSIKET 362


>gi|422324913|ref|ZP_16405950.1| 30S ribosomal protein S1 [Rothia mucilaginosa M508]
 gi|353343622|gb|EHB87937.1| 30S ribosomal protein S1 [Rothia mucilaginosa M508]
          Length = 484

 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 191/416 (45%), Gaps = 66/416 (15%)

Query: 1004 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1053
            +S     + +++IG +  F E  + +I     G  V+G V K+D++  LL I       +
Sbjct: 1    MSTNIPQVAINDIGDEQAFLEAVEKTIKVFNDGDLVSGQVVKIDHDEVLLDIGYKTEGVI 60

Query: 1054 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1113
             ++   +    +PSE+ E      +G  V   VL+  KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDIDPSEVVE------LGSEVEALVLT--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1114 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            I        + E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------VKENDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
                          Q ++ K++E+ +      +V LS R+ L+   S   S         
Sbjct: 164  --------------QQIEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSSF------- 199

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
                  + +L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 200  ------LNELEKGQVREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLF 1351
            + V   VL V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F
Sbjct: 253  QPVTVEVLEVDLDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAF 307

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +E+  + GL H+SEL+  HVD  E +   GE+V VKI+ +D ++RRISL +K +
Sbjct: 308  VRVED-GIEGLVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           ++++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   V
Sbjct: 201 NELEKGQVREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEV 259

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G
Sbjct: 260 LEVDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEG 316

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL          +  VG+ V  +I+      RRI+LS 
Sbjct: 317 LVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSL 359



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 157/350 (44%), Gaps = 35/350 (10%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G+V+ +D    ++      + + P   +S    + P +  ++G+E+   VL  + 
Sbjct: 33  GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVELGSEVEALVLTKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKVKE-NDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R S  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELE 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P    + L
Sbjct: 205 KGQVREGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQP-VTVEVL 260

Query: 594 LV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
            V LD E  +L L A        Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 261 EVDLDRERVSLSLKA-------TQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 651 LTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+ +  +  DL+ +   VG+ V   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISE-LATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362


>gi|159899614|ref|YP_001545861.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
            DSM 785]
 gi|159892653|gb|ABX05733.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
          Length = 501

 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 7/184 (3%)

Query: 1230 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1289
            D  G    ++ DL   M + G V +    G F+ +    D  V +S +SD  +ESP    
Sbjct: 90   DEDGTTPRRLADLHAGMELDGKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVV 149

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDS----RTASQSEINN--LSNLHVGDIVIGQIK 1343
             IG +V  RV SV+P ++R+ +T+++  S    R   + E+NN  L  L  GD+V G + 
Sbjct: 150  QIGDIVKVRVKSVDPDARRISLTMRSPRSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVN 209

Query: 1344 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403
             +  +G+F+ I      GL H+SELSE+ V+  E     G+    ++L+VD   +RISL 
Sbjct: 210  GIAPFGVFVDI-GVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVLEVDTGAQRISLS 268

Query: 1404 MKSS 1407
            ++ +
Sbjct: 269  LRRA 272



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 125/269 (46%), Gaps = 27/269 (10%)

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
            G+ V IG    G VH +E+ +  +  P    D  Q         G  VK +V  +    R
Sbjct: 119  GVFVDIGVGRDGLVHISEMSDQRIESP---TDVVQI--------GDIVKVRVKSVDPDAR 167

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
                + L++RS         S         P  + +K+ +L P  +V G V  +   G F
Sbjct: 168  ---RISLTMRSP-------RSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVNGIAPFGVF 217

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS----- 1316
            + +    D  V +S LS+  VE  E    +G+    RVL V+  ++R+ ++L+ +     
Sbjct: 218  VDIGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVLEVDTGAQRISLSLRRAKEDFQ 277

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
            +   A +    NL  +  G ++ G++  +  +G F+ +      GL H+SELSE  V  +
Sbjct: 278  ERPKAPRRREVNLDVIAPGTVLDGKVSGIAPFGAFVDL-GVGRDGLVHISELSEGRVGKV 336

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + + + G+ VKV++L+VD + +RISL M+
Sbjct: 337  DDVVKVGDPVKVRVLEVDPDSKRISLTMR 365



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 27/269 (10%)

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
           G +T    +G FV    G  G    SE+       P+ +  +G +VK R+ S  P +RRI
Sbjct: 110 GKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVVQIGDIVKVRVKSVDPDARRI 169

Query: 517 NLSF--------MMKPTR--VSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSK-G 563
           +L+            P R  V+ D L  +K G LV G V+ + P  V V +   G  K G
Sbjct: 170 SLTMRSPRSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVNGIAPFGVFVDI---GVGKDG 226

Query: 564 TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 623
            +    L+++          +   Y F ++L +D  +  + LS + +     Q+ P    
Sbjct: 227 LVHISELSENRVEKAEDAVTVGQSYTF-RVLEVDTGAQRISLSLRRAK-EDFQERPKAPR 284

Query: 624 H-------IHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVG 675
                   I P +V+ G V  I   G FV   +GR  G    S+  +G+   +     VG
Sbjct: 285 RREVNLDVIAPGTVLDGKVSGIAPFGAFVDLGVGR-DGLVHISELSEGRVGKVDDVVKVG 343

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSST 704
             V+  +L+V+ ++ RI+L+++     +T
Sbjct: 344 DPVKVRVLEVDPDSKRISLTMRVEEAPTT 372



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 28/247 (11%)

Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLR-PFQDGI--SDKTVDISNDNMQTFIHEGDIVGGRI 1133
             IG  V   V S++ + + + L +R P  +G   + K  +++ND +   +  GD+V G +
Sbjct: 150  QIGDIVKVRVKSVDPDARRISLTMRSPRSEGRRRAPKRPEVNNDKLGE-LKPGDLVDGTV 208

Query: 1134 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
            + I     G+ V IG    G VH +EL    V        E   D ++    GQ    +V
Sbjct: 209  NGIAPF--GVFVDIGVGKDGLVHISELSENRV--------EKAEDAVT---VGQSYTFRV 255

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            LE+     G   + LSLR +          D       P +    ++ ++P  ++ G V 
Sbjct: 256  LEVDT---GAQRISLSLRRA--------KEDFQERPKAPRRREVNLDVIAPGTVLDGKVS 304

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             +   G F+ L    D  V +S LS+G V   +    +G  V  RVL V+P SKR+ +T+
Sbjct: 305  GIAPFGAFVDLGVGRDGLVHISELSEGRVGKVDDVVKVGDPVKVRVLEVDPDSKRISLTM 364

Query: 1314 KTSDSRT 1320
            +  ++ T
Sbjct: 365  RVEEAPT 371



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 16/178 (8%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           ++KPG +V G V  +  FG  V    G   L  +  +SE  + K      VG    FRVL
Sbjct: 197 ELKPGDLVDGTVNGIAPFGVFVDIGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVL 256

Query: 421 GVKS--KRITVTHKKT---------LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 469
            V +  +RI+++ ++            + +   L   A  T   +  G ++ I   G FV
Sbjct: 257 EVDTGAQRISLSLRRAKEDFQERPKAPRRREVNLDVIAPGT---VLDGKVSGIAPFGAFV 313

Query: 470 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK--PT 525
               G  G    SEL      +   +  VG  VK R++   P S+RI+L+  ++  PT
Sbjct: 314 DLGVGRDGLVHISELSEGRVGKVDDVVKVGDPVKVRVLEVDPDSKRISLTMRVEEAPT 371



 Score = 42.0 bits (97), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 20/209 (9%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           +D+  GM + GKV +   +G  V    G   L  +  MS+  I  P    ++G  +  RV
Sbjct: 100 ADLHAGMELDGKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVVQIGDIVKVRV 159

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL-------ITHGWITKIEKHGCFVR 470
             V   ++RI++T +    + +           D+L       +  G +  I   G FV 
Sbjct: 160 KSVDPDARRISLTMRSPRSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVNGIAPFGVFVD 219

Query: 471 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS-------FMMK 523
              G  G    SEL  +   +      VGQ    R++     ++RI+LS       F  +
Sbjct: 220 IGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVLEVDTGAQRISLSLRRAKEDFQER 279

Query: 524 PT----RVSEDDLVKLGSLVSGVVDVVTP 548
           P     R    D++  G+++ G V  + P
Sbjct: 280 PKAPRRREVNLDVIAPGTVLDGKVSGIAP 308


>gi|283783083|ref|YP_003373837.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
 gi|283441435|gb|ADB13901.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
          Length = 500

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 58/407 (14%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1123 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1360
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +RI+++ K T          ++       +  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---VVKGKVTKIVQFGVFISVEDGIEG 319

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 113/255 (44%), Gaps = 21/255 (8%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 507
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 508 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 568 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
            P  VV G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDV 351

Query: 686 NSETGRITLSLKQSC 700
           + +  RI+LSLKQ+ 
Sbjct: 352 DLDRRRISLSLKQAT 366



 Score = 44.7 bits (104), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 771 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 805
              +LA   VE+       G  +   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 291
           +K+ A+IL +D     V L+   +L   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 292 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 348
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 349 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 408
              ++    TH    PG VVKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 409 FKVGAELVFRVLGV--KSKRITVTHKKT 434
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKGGEEVFVKVIDVDLDRRRISLSLKQA 365


>gi|415712938|ref|ZP_11465049.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
 gi|415713844|ref|ZP_11465297.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
 gi|388056538|gb|EIK79402.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
 gi|388059567|gb|EIK82298.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
          Length = 500

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 58/407 (14%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1123 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1360
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +RI+++ K T          ++       +  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---VVKGKVTKIVQFGVFISVEDGIEG 319

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSL 362



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 507
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 508 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 568 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
            P  VV G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDV 351

Query: 686 NSETGRITLSLKQS 699
           + +  RI+LSLKQ+
Sbjct: 352 DLDRRRISLSLKQA 365



 Score = 44.7 bits (104), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 771 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 805
              +LA   VE+       G  +   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 291
           +K+ A+IL +D     V L+   +L   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 292 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 348
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 349 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 408
              ++    TH    PG VVKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 409 FKVGAELVFRVLGV--KSKRITVTHKKT 434
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 40.8 bits (94), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  +V+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANEAVDPNSE 374


>gi|415720875|ref|ZP_11468119.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
 gi|415724199|ref|ZP_11469798.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
 gi|388061136|gb|EIK83793.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
 gi|388062890|gb|EIK85493.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
          Length = 501

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 182/406 (44%), Gaps = 56/406 (13%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKDADG 124

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            I EG +       I +  GGL+V IG   +      E++ +    P  G           
Sbjct: 125  IVEGTV-------IEAVKGGLIVDIGLRGFLPASLVEMRRVRDLSPYIG----------- 166

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
                Q +K K+LE+ +      +V LS R  L+   S                   +  L
Sbjct: 167  ----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQL 206

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V
Sbjct: 207  KKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDV 265

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVG 1361
            +   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + G
Sbjct: 266  DLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIEG 319

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 320  LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +RI+++ K T          ++       +  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---VVKGKVTKIVQFGVFISVEDGIEG 319

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSL 362



 Score = 48.5 bits (114), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 507
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 508 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 568 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
            P  VV G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDV 351

Query: 686 NSETGRITLSLKQS 699
           + +  RI+LSLKQ+
Sbjct: 352 DLDRRRISLSLKQA 365



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 771 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 805
              +LA   VE+       G  +   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLK 363



 Score = 40.8 bits (94), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 291
           +K+ A+IL +D     V L+   +L   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 292 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 348
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 349 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 408
              ++    TH    PG VVKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 409 FKVGAELVFRVLGV--KSKRITVTHKKT 434
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 40.8 bits (94), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  +V+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANEAVDPNSE 374


>gi|308235374|ref|ZP_07666111.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14018 = JCM
            11026]
 gi|311114868|ref|YP_003986089.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
 gi|385801539|ref|YP_005837942.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
 gi|415703249|ref|ZP_11459127.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
 gi|415705124|ref|ZP_11460395.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
 gi|415707058|ref|ZP_11461905.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
 gi|417556555|ref|ZP_12207612.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
 gi|310946362|gb|ADP39066.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
 gi|333392955|gb|AEF30873.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
 gi|333602243|gb|EGL13673.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
 gi|388051846|gb|EIK74870.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
 gi|388052709|gb|EIK75724.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
 gi|388054058|gb|EIK77003.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
          Length = 500

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 182/406 (44%), Gaps = 56/406 (13%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKDADG 124

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            I EG +       I +  GGL+V IG   +      E++ +    P  G           
Sbjct: 125  IVEGTV-------IEAVKGGLIVDIGLRGFLPASLVEMRRVRDLSPYIG----------- 166

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
                Q +K K+LE+ +      +V LS R  L+   S                   +  L
Sbjct: 167  ----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQL 206

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V
Sbjct: 207  KKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDV 265

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVG 1361
            +   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + G
Sbjct: 266  DLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIEG 319

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L H+SEL+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 320  LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +RI+++ K T          ++       +  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---VVKGKVTKIVQFGVFISVEDGIEG 319

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSL 362



 Score = 48.5 bits (114), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 507
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 508 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 568 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
            P  VV G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDV 351

Query: 686 NSETGRITLSLKQS 699
           + +  RI+LSLKQ+
Sbjct: 352 DLDRRRISLSLKQA 365



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 771 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 805
              +LA   VE+       G  +   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLK 363



 Score = 40.8 bits (94), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 237 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 291
           +K+ A+IL +D     V L+   +L   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 292 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 348
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 349 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 408
              ++    TH    PG VVKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 409 FKVGAELVFRVLGV--KSKRITVTHKKT 434
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKGGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 40.8 bits (94), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  +V+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+
Sbjct: 293  PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANEAVDPNSE 374


>gi|379058793|ref|ZP_09849319.1| 30S ribosomal protein S1 [Serinicoccus profundi MCCC 1A05965]
          Length = 486

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 190/416 (45%), Gaps = 66/416 (15%)

Query: 1009 SMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            S + V++IGS+  L    D +I     G  V G + KVD +  LL I       + ++  
Sbjct: 11   SQIAVNDIGSEEELLAAIDATIKNFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVIPSREL 70

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +PSE+        +G  V   VL   KE K  RL+L   +        + +  +
Sbjct: 71   AIKHDVDPSEV------VTVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGS 117

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
            ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +     
Sbjct: 118  IEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----- 170

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
                      ++ K++E+ +      +V LS R+ L+   S   +               
Sbjct: 171  ----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF------------- 204

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +++L+   +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   
Sbjct: 205  LKELAKGQVRSGVVSSIVNFGAFVDLGGGVDGLVHVSELSWKHIDHPGEVVEVGDEVTVE 264

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1357
            VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+ 
Sbjct: 265  VLDVDMDRERVSLSLKAT-----LEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED- 318

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
             + GL H+SEL+E HV+  E I   G +V VK++ +D E+RRISL +K +   NDA
Sbjct: 319  GIEGLVHISELAERHVELPEQIVTVGAEVFVKVIDIDLERRRISLSLKQA---NDA 371



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
           G V  G V ++ +FGA V   GGV  L  +  +S   I  PG+  +VG E+   VL V  
Sbjct: 211 GQVRSGVVSSIVNFGAFVDLGGGVDGLVHVSELSWKHIDHPGEVVEVGDEVTVEVLDVDM 270

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K TL         ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATLEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           EL       P  +  VG  V  +++      RRI+LS 
Sbjct: 328 ELAERHVELPEQIVTVGAEVFVKVIDIDLERRRISLSL 365



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 30/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   ++    V P +   VG E+   VL  + 
Sbjct: 38  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELAIKHDVDPSEVVTVGDEVEALVLQKED 97

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGSIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    + 
Sbjct: 154 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELA 209

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +       +V   G   G +    L+  H++H      V++ G E   +
Sbjct: 210 KGQVRSGVVSSIVNFGA--FVDLGGGVDGLVHVSELSWKHIDHPG---EVVEVGDEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +L +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLDVDMDRERVSLSLKATLEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAERHVELPEQIVTVGAEVFVKVIDIDLERRRISLSLKQA 368



 Score = 43.9 bits (102), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 124/284 (43%), Gaps = 39/284 (13%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
           G +V GV+  V  + V++ +   GY ++G IP+  LA  ++H      V+  G E + L+
Sbjct: 38  GDIVEGVIVKVDRDEVLLDI---GYKTEGVIPSRELA--IKHDVDPSEVVTVGDEVEALV 92

Query: 595 VL-DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
           +  +++   L+LS K +    A    S       + VV G V  +++ G  +     L G
Sbjct: 93  LQKEDKEGRLILSKKRAQYERA--WGSIEKIKEEDGVVTGTVIEVVKGGLILDI--GLRG 148

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDASFMQ 710
           F P S     +  DL    YVG+ + + I++++     + LS +   +   S    +F++
Sbjct: 149 FLPASLVEMRRVRDLQP--YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLK 206

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFI-IGSVIEGKVHESNDFGVVVSFEEHSDVYGF 769
           E    + +  ++ S  + G+       F+ +G  ++G VH S      +S++        
Sbjct: 207 ELAKGQVRSGVVSSIVNFGA-------FVDLGGGVDGLVHVSE-----LSWK-------- 246

Query: 770 ITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
             H    G  VE G  +   +LDV      V LSLK    D ++
Sbjct: 247 --HIDHPGEVVEVGDEVTVEVLDVDMDRERVSLSLKATLEDPWQ 288



 Score = 43.9 bits (102), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 133/305 (43%), Gaps = 53/305 (17%)

Query: 1031 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1081
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 112  ERAWGSIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 170

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1138
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 171  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELAKGQVRSGVVSSIVN 223

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
               G  V +G  + G VH +EL    +  P      G+       + G  V  +VL++  
Sbjct: 224  F--GAFVDLGGGVDGLVHVSELSWKHIDHP------GEV-----VEVGDEVTVEVLDVDM 270

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LSL+++L+    T +   +     PGK                 V  +   
Sbjct: 271  DRE---RVSLSLKATLEDPWQTFARTHAIGQVVPGK-----------------VTKLVPF 310

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   ++  V +S L++ +VE PE+   +G  V  +V+ ++   +R+ ++LK ++ 
Sbjct: 311  GAFVRVEDGIEGLVHISELAERHVELPEQIVTVGAEVFVKVIDIDLERRRISLSLKQAND 370

Query: 1319 RTASQ 1323
              A++
Sbjct: 371  AVANE 375


>gi|257068664|ref|YP_003154919.1| 30S ribosomal protein S1 [Brachybacterium faecium DSM 4810]
 gi|256559482|gb|ACU85329.1| SSU ribosomal protein S1P [Brachybacterium faecium DSM 4810]
          Length = 493

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 186/402 (46%), Gaps = 65/402 (16%)

Query: 1017 GSKLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPS 1067
            G+  L    D +I     G  V G V KVD++  LL I       + ++   +    +P 
Sbjct: 16   GADELMAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPG 75

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
            E+ E      +G  +   VL   KE K  RL+L   +        + +   ++    +  
Sbjct: 76   EIVE------VGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIEQIKEDEG 122

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            +V GR+ +++ G  GL+V IG   +      E++ +    P  G               Q
Sbjct: 123  VVTGRVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG---------------Q 165

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             ++ K++E+ +      +V LS R+ L+   S   SD              ++ L    +
Sbjct: 166  EIEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSDF-------------LQTLQKGQV 209

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
             +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V+  VL V+   +
Sbjct: 210  REGAVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVSVEVLDVDMDRE 268

Query: 1308 RVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
            RV ++LK      A+Q +   L +  H +G++V G++ ++  +G F+ +E+  + GL H+
Sbjct: 269  RVSLSLK------ATQEDPWQLFARTHAIGEVVPGKVTKLVPFGAFVRVED-GIEGLVHI 321

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            SEL++ HVD  E +    + V VK++ +D E+RRISL +K +
Sbjct: 322  SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQA 363



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 163/392 (41%), Gaps = 44/392 (11%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEIVEVGDEIEALVLQKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEQIKE--DEGVVTGRVIEVVKGGLIVDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFLQTLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  G V  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 206 KGQVREGAVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVSVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 260 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHAIGEVVPGKVTKLVPFGAFVRVEDGI 315

Query: 652 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSC----CSSTDA 706
            G    S+    +  DL  +   V Q V   ++D++ E  RI+LSLKQ+         D 
Sbjct: 316 EGLVHISELAQ-RHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQANEGVDPEGDDT 374

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 738
           +F    +       M      NG E K+ EGF
Sbjct: 375 TFDPALY------GMAAEYDANG-EYKYPEGF 399



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 2/159 (1%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   VL 
Sbjct: 204 LQKGQVREGAVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVSVEVLD 262

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           V   R  V+      +     L +   A   ++  G +TK+   G FVR  +G++G    
Sbjct: 263 VDMDRERVSLSLKATQEDPWQLFARTHAIGEVVP-GKVTKLVPFGAFVRVEDGIEGLVHI 321

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           SEL       P  +  V Q V  +++      RRI+LS 
Sbjct: 322 SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSL 360



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 60/294 (20%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
           G +V G V  V  + V++ +   GY ++G IP+  L+  ++H      +++ G E + L+
Sbjct: 34  GDIVEGTVVKVDHDEVLLDI---GYKTEGVIPSRELS--IKHDVDPGEIVEVGDEIEALV 88

Query: 595 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
           +  +++   L+LS K +    A    +Q+  D        VV G V  +++ G  V    
Sbjct: 89  LQKEDKEGRLILSKKRAQYERAWGTIEQIKED------EGVVTGRVIEVVKGGLIVDI-- 140

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDA 706
            L GF P S     +  DL    YVGQ + + I++++     + LS +   +   S+  +
Sbjct: 141 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRS 198

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
            F+Q           LQ                 G V EG V    +FG  V       V
Sbjct: 199 DFLQ----------TLQK----------------GQVREGAVSSIVNFGAFVDL---GGV 229

Query: 767 YGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
            G +   +L+          VE G  +   +LDV      V LSLK    D ++
Sbjct: 230 DGLVHVSELSWKHIDHPSEVVEVGQKVSVEVLDVDMDRERVSLSLKATQEDPWQ 283


>gi|374314868|ref|YP_005061296.1| 30S ribosomal protein S1 [Sphaerochaeta pleomorpha str. Grapes]
 gi|359350512|gb|AEV28286.1| ribosomal protein S1 [Sphaerochaeta pleomorpha str. Grapes]
          Length = 573

 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 172/377 (45%), Gaps = 54/377 (14%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            GQ V G V +V+NE+  + +    + ++             EF     +G+ V   V+ I
Sbjct: 32   GQLVAGTVVQVNNEYVFVDVGYKSEGRI----------SRDEFTTIPEVGEQV--KVVII 79

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
            NKE K  ++V+   +    ++T     D ++T       V G+  K++ G  G  V +G 
Sbjct: 80   NKEGKGGQIVVSKKRADFKERT-----DELKTAAEGRTPVMGKFEKVIKG--GFEVDLGG 132

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
               G    ++   I V DP +      +  +  +  G  +K  V               +
Sbjct: 133  EYKGFCPLSKADVIRVEDPETLIGISDYFIIDKFHGGTKLKSVV---------------N 177

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
             R  LD     N     + V        +I D     +V+G VK+ TS G FI L    D
Sbjct: 178  RREYLDQKIKENKEKFFSTV--------QIGD-----VVEGVVKSFTSFGAFIDLG-GFD 223

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1329
              + ++++S G+V  P+     G++V  R+++++P ++++ ++LK       +  E    
Sbjct: 224  GLLHINDMSWGHVTRPKDFVKKGQVVQLRLINIDPETQKINLSLKHMQEDPWTTFE---- 279

Query: 1330 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKV 1388
             N HVGD+V   + ++ ++G FI IE   + GL H+SELS    V+N + +   G+ V+ 
Sbjct: 280  HNFHVGDVVKAPVTKITTFGAFIEIE-PGIEGLAHISELSWTKRVNNPKEVLDVGDVVEA 338

Query: 1389 KILKVDKEKRRISLGMK 1405
            KIL  D +K+R+SLG+K
Sbjct: 339  KILGYDLDKKRVSLGLK 355



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 148/352 (42%), Gaps = 27/352 (7%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S V+ G VV+G V +  SFGA +   GG   L  +  MS   + +P    K G  +  R+
Sbjct: 195 STVQIGDVVEGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQVVQLRL 253

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           + +  ++++I ++ K  + +             D  +    +TKI   G F+    G++G
Sbjct: 254 INIDPETQKINLSLKH-MQEDPWTTFEHNFHVGD--VVKAPVTKITTFGAFIEIEPGIEG 310

Query: 478 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 533
            A  SEL        P  +  VG VV+ +I+      +R++L        P     +   
Sbjct: 311 LAHISELSWTKRVNNPKEVLDVGDVVEAKILGYDLDKKRVSLGLKQLESNPWDTIAERYP 370

Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFD 591
              +L   VV +    A V         +G     H+ D    +    M S    G   D
Sbjct: 371 TGMTLSKPVVKITNSGAFV------NLEEGIDGFLHIDDISWTKKVKNMSSFCAEGDVID 424

Query: 592 QLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLG 649
            ++  ++ E+  + L  K    N  Q L     H +P  S + G + N+ + G FV+ LG
Sbjct: 425 VVVTRVEPENRRIRLGVKQLEGNPWQTL----RHDYPKFSTISGVITNVTDFGVFVKVLG 480

Query: 650 RLTGFAPRSKAV--DGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            + G   +   V  D + +D + K Y VG  + + +++ N  T +++LS+K+
Sbjct: 481 DIEGLISKFNLVGPDEEFSDEVLKKYNVGDPITAMVVECNPTTQKLSLSIKE 532



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 121/300 (40%), Gaps = 25/300 (8%)

Query: 269 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 328
           S V++GD+ +   VV+     G  +D+          + I+D++   V + +   K+G  
Sbjct: 195 STVQIGDVVE--GVVKSFTSFGAFIDLGGFD----GLLHINDMSWGHVTRPKDFVKKGQV 248

Query: 329 VRVRILGFR-HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 387
           V++R++      + +   +          F H+    G VVK  V  + +FGA ++   G
Sbjct: 249 VQLRLINIDPETQKINLSLKHMQEDPWTTFEHN-FHVGDVVKAPVTKITTFGAFIEIEPG 307

Query: 388 VKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLA 441
           ++ L    H+SE    K    P +   VG  +  ++LG  +  KR+++  K+        
Sbjct: 308 IEGLA---HISELSWTKRVNNPKEVLDVGDVVEAKILGYDLDKKRVSLGLKQLESNPWDT 364

Query: 442 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQ 500
           I   Y      +     + KI   G FV    G+ GF    ++      +  SS    G 
Sbjct: 365 IAERYPTG---MTLSKPVVKITNSGAFVNLEEGIDGFLHIDDISWTKKVKNMSSFCAEGD 421

Query: 501 VVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
           V+   +    P +RRI L        P +    D  K  S +SGV+  VT   V V V+ 
Sbjct: 422 VIDVVVTRVEPENRRIRLGVKQLEGNPWQTLRHDYPKF-STISGVITNVTDFGVFVKVLG 480



 Score = 48.1 bits (113), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 7/161 (4%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1305
            +V+  V  +T+ G FI +   ++    +S LS    V +P++   +G +V  ++L  +  
Sbjct: 287  VVKAPVTKITTFGAFIEIEPGIEGLAHISELSWTKRVNNPKEVLDVGDVVEAKILGYDLD 346

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
             KRV + LK  +S           + + +   V+    ++ + G F+ +E   + G  H+
Sbjct: 347  KKRVSLGLKQLESNPWDTIAERYPTGMTLSKPVV----KITNSGAFVNLEE-GIDGFLHI 401

Query: 1366 SELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             ++S    V N+ +    G+ + V + +V+ E RRI LG+K
Sbjct: 402  DDISWTKKVKNMSSFCAEGDVIDVVVTRVEPENRRIRLGVK 442


>gi|255327556|ref|ZP_05368623.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296]
 gi|255295450|gb|EET74800.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296]
          Length = 484

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 191/416 (45%), Gaps = 66/416 (15%)

Query: 1004 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1053
            +S     + +++IG +  F E  + +I     G  V+G V K+D++  LL I       +
Sbjct: 1    MSTNIPQVAINDIGDEQAFLEAVEKTIKVFNDGDLVSGQVVKIDHDEVLLDIGYKTEGVI 60

Query: 1054 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1113
             ++   +    +PSE+ E      +G  V   VL+  KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDIDPSEVVE------LGSEVEALVLT--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1114 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            I        + E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------VKENDGVVTGAVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
                          Q ++ K++E+ +      +V LS R+ L+   S   S         
Sbjct: 164  --------------QQLEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSSF------- 199

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
                  + +L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 200  ------LNELEKGQVREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLF 1351
            + V   VL V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F
Sbjct: 253  QPVTVEVLEVDLDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAF 307

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +E+  + GL H+SEL+  HVD  E +   GE+V VKI+ +D ++RRISL +K +
Sbjct: 308  VRVED-GIEGLVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           ++++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   V
Sbjct: 201 NELEKGQVREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEV 259

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G
Sbjct: 260 LEVDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEG 316

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL          +  VG+ V  +I+      RRI+LS 
Sbjct: 317 LVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSL 359



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 157/350 (44%), Gaps = 35/350 (10%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G+V+ +D    ++      + + P   +S    + P +  ++G+E+   VL  + 
Sbjct: 33  GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVELGSEVEALVLTKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKVKE-NDGVVT-GAVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R S  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELE 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P    + L
Sbjct: 205 KGQVREGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQP-VTVEVL 260

Query: 594 LV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
            V LD E  +L L A        Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 261 EVDLDRERVSLSLKA-------TQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 651 LTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+ +  +  DL+ +   VG+ V   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISE-LATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362


>gi|415726676|ref|ZP_11470947.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
 gi|388062902|gb|EIK85501.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
          Length = 499

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 58/407 (14%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1123 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1360
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            GL H+SEL+  HV+N ET+ +A E+V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 21/262 (8%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 507
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 508 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 568 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
            P  VV G V  I++ G F+     + G    S+  +    +        + V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFVKVIDV 351

Query: 686 NSETGRITLSLKQSCCSSTDAS 707
           + +  RI+LSLKQ+  +   AS
Sbjct: 352 DLDRRRISLSLKQANEAVDPAS 373



 Score = 44.7 bits (104), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 771 THHQLAGATVESGSVIQAA-------ILDVAKAERLVDLSLK 805
              +LA   VE+   +  A       ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLK 363


>gi|410459394|ref|ZP_11313145.1| 30S ribosomal protein S1 [Bacillus azotoformans LMG 9581]
 gi|409930370|gb|EKN67371.1| 30S ribosomal protein S1 [Bacillus azotoformans LMG 9581]
          Length = 377

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 174/385 (45%), Gaps = 66/385 (17%)

Query: 1028 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1087
            +IG  V G V KV+++  L+ I        F ++     SEL       HI KA  G V+
Sbjct: 15   AIGDTVGGKVTKVEDKHVLVDIG-------FKVEGIVPISELS----SLHIEKA--GDVV 61

Query: 1088 SINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
             +N +  L  + +   +  +S K VD  N  D +      G++    +  ++ G  GLVV
Sbjct: 62   KVNDDLTLKVIKVEEEEIILSKKAVDAENAWDELVNKFETGEVFEAEVKDVVKG--GLVV 119

Query: 1146 QIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
             IG     P      HF E                     S Y +G+ +  KV+EI R  
Sbjct: 120  DIGVRGFIPASLVERHFVE-------------------DFSEY-KGRNISLKVVEIDRE- 158

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                 V LS R+ LD   ++                + I+ L    +++G V+ +   G 
Sbjct: 159  --KNRVILSHRAVLDDEIASQKQ-------------QTIDALKVGQVLEGTVQRLADFGV 203

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ +   +D  V +S L+  +V+ P      G+ V  +VLS++  ++R+ +++K +    
Sbjct: 204  FVDIG-GIDGLVHISQLAHQHVDKPADVVAEGQKVKVKVLSIDKDNERISLSIKETLPGP 262

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
                   +L     GD V G +KR+ ++G F+ +   N+ GL H+S++S  H+     + 
Sbjct: 263  W------DLIEYKRGDEVSGTVKRLVNFGAFVEV-APNVEGLVHISQISNRHIATPHEVL 315

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMK 1405
            + GEKVKVKIL ++KE +RISL +K
Sbjct: 316  KEGEKVKVKILDINKENQRISLSIK 340



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 69/117 (58%), Gaps = 4/117 (3%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            G+ ++ +V+ ++    RV ++ +   D   ASQ +   +  L VG ++ G ++R+  +G+
Sbjct: 145  GRNISLKVVEIDREKNRVILSHRAVLDDEIASQKQ-QTIDALKVGQVLEGTVQRLADFGV 203

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            F+ I   +  GL H+S+L+  HVD    +   G+KVKVK+L +DK+  RISL +K +
Sbjct: 204  FVDIGGID--GLVHISQLAHQHVDKPADVVAEGQKVKVKVLSIDKDNERISLSIKET 258



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 141/341 (41%), Gaps = 23/341 (6%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G  V GKV  V+    +V     V+ + P+  +S   I K G   KV  +L  +V+ V+ 
Sbjct: 17  GDTVGGKVTKVEDKHVLVDIGFKVEGIVPISELSSLHIEKAGDVVKVNDDLTLKVIKVEE 76

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
           + I ++ K    ++    L +  E  +  +    +  + K G  V    GV+GF P S L
Sbjct: 77  EEIILSKKAVDAENAWDELVNKFETGE--VFEAEVKDVVKGGLVVDI--GVRGFIPAS-L 131

Query: 485 GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSL 538
                 E  S Y  G+ +  +++      + +  S R  L   +   +    D +K+G +
Sbjct: 132 VERHFVEDFSEYK-GRNISLKVVEIDREKNRVILSHRAVLDDEIASQKQQTIDALKVGQV 190

Query: 539 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 597
           + G V  +    V V +   G   G +    LA   +H      V+  G +   ++L +D
Sbjct: 191 LEGTVQRLADFGVFVDI---GGIDGLVHISQLAH--QHVDKPADVVAEGQKVKVKVLSID 245

Query: 598 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
            ++  + LS K +L       P D         V G V  ++  G FV     + G    
Sbjct: 246 KDNERISLSIKETLPG-----PWDLIEYKRGDEVSGTVKRLVNFGAFVEVAPNVEGLVHI 300

Query: 658 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
           S+  +   A   +    G+ V+  ILD+N E  RI+LS+K+
Sbjct: 301 SQISNRHIATPHEVLKEGEKVKVKILDINKENQRISLSIKE 341



 Score = 41.2 bits (95), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 105/261 (40%), Gaps = 30/261 (11%)

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY--HVGQVVKCRIMSSIPASR 514
           G +TK+E     V     V+G  P SEL        SS++    G VVK     ++   +
Sbjct: 22  GKVTKVEDKHVLVDIGFKVEGIVPISEL--------SSLHIEKAGDVVKVNDDLTLKVIK 73

Query: 515 ----RINLSFMMKPTRVSEDDLV---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
                I LS        + D+LV   + G +    V  V    +VV +  +G+   ++  
Sbjct: 74  VEEEEIILSKKAVDAENAWDELVNKFETGEVFEAEVKDVVKGGLVVDIGVRGFIPASLVE 133

Query: 568 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL---INSAQQLPSDASH 624
            H  +           +K       ++ +D E + ++LS +  L   I S +Q   DA  
Sbjct: 134 RHFVEDFSEYKGRNISLK-------VVEIDREKNRVILSHRAVLDDEIASQKQQTIDALK 186

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V+ G V  + + G FV  +G + G    S+         +     GQ V+  +L 
Sbjct: 187 V--GQVLEGTVQRLADFGVFVD-IGGIDGLVHISQLAHQHVDKPADVVAEGQKVKVKVLS 243

Query: 685 VNSETGRITLSLKQSCCSSTD 705
           ++ +  RI+LS+K++     D
Sbjct: 244 IDKDNERISLSIKETLPGPWD 264


>gi|415728146|ref|ZP_11471719.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
 gi|388065284|gb|EIK87775.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
          Length = 500

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 58/407 (14%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1123 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1360
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            GL H+SEL+  HV+N ET+ +A E+V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 47.4 bits (111), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 21/255 (8%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 507
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 508 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 568 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
            P  VV G V  I++ G F+     + G    S+  +    +        + V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFVKVIDV 351

Query: 686 NSETGRITLSLKQSC 700
           + +  RI+LSLKQ+ 
Sbjct: 352 DLDRRRISLSLKQAT 366



 Score = 44.7 bits (104), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 771 THHQLAGATVESGSVIQAA-------ILDVAKAERLVDLSLK 805
              +LA   VE+   +  A       ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLK 363


>gi|415718164|ref|ZP_11467146.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
 gi|388059993|gb|EIK82694.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
          Length = 500

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 58/407 (14%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1123 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1360
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            GL H+SEL+  HV+N ET+ +A E+V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 47.4 bits (111), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 21/255 (8%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 507
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 508 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 568 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
            P  VV G V  I++ G F+     + G    S+  +    +        + V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFVKVIDV 351

Query: 686 NSETGRITLSLKQSC 700
           + +  RI+LSLKQ+ 
Sbjct: 352 DLDRRRISLSLKQAT 366



 Score = 44.7 bits (104), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 771 THHQLAGATVESGSVIQAA-------ILDVAKAERLVDLSLK 805
              +LA   VE+   +  A       ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLK 363


>gi|403251339|ref|ZP_10917683.1| ribosomal protein S1 [actinobacterium SCGC AAA027-L06]
 gi|402915310|gb|EJX36289.1| ribosomal protein S1 [actinobacterium SCGC AAA027-L06]
          Length = 444

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 184/413 (44%), Gaps = 64/413 (15%)

Query: 1006 IKPSMLTVSEIGSKLLFEEC------DVSIGQRVTGYVYKVDNEWALLTISRH----LKA 1055
            + PS + V+++GS   F         + + G  V+G V ++D E  LL I       + +
Sbjct: 1    MTPSQIAVNDVGSAEDFLAAIEGTIKNFNDGDLVSGIVVQIDREEVLLDIGYKTEGVIPS 60

Query: 1056 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1115
            +   +    +PSEL        +G  V   VL   KE K  RL+L   +        D+ 
Sbjct: 61   RELSIRHDVDPSEL------VKVGDRVEALVL--QKEDKEGRLILSKKRAQYEQAWGDVE 112

Query: 1116 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1175
                +      ++V G + +++ G  GL+V IG   +      E++ +    P  G    
Sbjct: 113  GKKERD-----EVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLTPYIG---- 161

Query: 1176 QFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1235
                       Q V+C+++E+ +      +V LS R+ L+   S + +            
Sbjct: 162  -----------QQVECRIIELDKNRN---NVVLSRRAFLEQSQSASRTTF---------- 197

Query: 1236 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1295
               +  L    +  G + ++ + G F+ L   +D  V +S LS  +++ P +   +G  V
Sbjct: 198  ---LNQLQKGQVRSGVISSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGDEV 253

Query: 1296 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITI 1354
               VL V+   +RV ++LK +      +      +  H +  +V G++ ++  +G FI +
Sbjct: 254  TVEVLEVDFERERVSLSLKAT-----QEDPWQAFARTHTINQVVPGEVTKLVPFGAFIKV 308

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
                + GL H+SEL+E HV+  E + + G+K+ VKI+ +D E+RRISL +K +
Sbjct: 309  -FEGIEGLVHISELAERHVEIPEQVVQVGDKLFVKIIDIDLERRRISLSLKQA 360



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 162/364 (44%), Gaps = 36/364 (9%)

Query: 350 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 409
           +A EG +   +D   G +V G V+ +D    ++      + + P   +S    V P +  
Sbjct: 19  AAIEGTIKNFND---GDLVSGIVVQIDREEVLLDIGYKTEGVIPSRELSIRHDVDPSELV 75

Query: 410 KVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 467
           KVG  +   VL  + K  R+ ++ K+   +     +    E  D ++T G + ++ K G 
Sbjct: 76  KVGDRVEALVLQKEDKEGRLILSKKRAQYEQAWGDVEGKKE-RDEVVT-GTVIEVVKGGL 133

Query: 468 FVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 519
            V    G++GF P S  E+       P    ++GQ V+CRI+      +++  SRR  L 
Sbjct: 134 IVDI--GLRGFLPASLVEMRRVRDLTP----YIGQQVECRIIELDKNRNNVVLSRRAFLE 187

Query: 520 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 578
                +R +  + ++ G + SGV+  +      V +   G   G +    L+  H++H +
Sbjct: 188 QSQSASRTTFLNQLQKGQVRSGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS 244

Query: 579 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYV 635
               V++ G E   ++L +D E   + LS K     + Q+ P  A +  H  N VV G V
Sbjct: 245 ---EVVEVGDEVTVEVLEVDFERERVSLSLK-----ATQEDPWQAFARTHTINQVVPGEV 296

Query: 636 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
             ++  G F++    + G    S+  +       +   VG  +   I+D++ E  RI+LS
Sbjct: 297 TKLVPFGAFIKVFEGIEGLVHISELAERHVEIPEQVVQVGDKLFVKIIDIDLERRRISLS 356

Query: 696 LKQS 699
           LKQ+
Sbjct: 357 LKQA 360



 Score = 43.9 bits (102), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 147/370 (39%), Gaps = 36/370 (9%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI  +     D  +  G + +I++    +      +G  P  EL +    +PS +  VG 
Sbjct: 20  AIEGTIKNFNDGDLVSGIVVQIDREEVLLDIGYKTEGVIPSRELSIRHDVDPSELVKVGD 79

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---VKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  ++       R+ LS        +  D+    +   +V+G V  V    ++V +  
Sbjct: 80  RVEALVLQKEDKEGRLILSKKRAQYEQAWGDVEGKKERDEVVTGTVIEVVKGGLIVDIGL 139

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINS-A 615
           +G+    +P    A  +E   V       G + + +++ LD   +N++LS +  L  S +
Sbjct: 140 RGF----LP----ASLVEMRRVRDLTPYIGQQVECRIIELDKNRNNVVLSRRAFLEQSQS 191

Query: 616 QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
               +  + +    V  G + +I+  G FV  LG + G    S+         S+   VG
Sbjct: 192 ASRTTFLNQLQKGQVRSGVISSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 250

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +L+V+ E  R++LSLK +      A F + H + +     +      G+ +K  
Sbjct: 251 DEVTVEVLEVDFERERVSLSLKATQEDPWQA-FARTHTINQVVPGEVTKLVPFGAFIKVF 309

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 795
           EG      IEG VH       +    E         H ++    V+ G  +   I+D+  
Sbjct: 310 EG------IEGLVH-------ISELAER--------HVEIPEQVVQVGDKLFVKIIDIDL 348

Query: 796 AERLVDLSLK 805
             R + LSLK
Sbjct: 349 ERRRISLSLK 358


>gi|15614199|ref|NP_242502.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
 gi|10174253|dbj|BAB05355.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
          Length = 383

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 178/380 (46%), Gaps = 54/380 (14%)

Query: 1028 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1087
            S+G  V+G V KV+++ A + +        F +D     SEL       H+ K     VL
Sbjct: 16   SVGDVVSGKVTKVEDKQAFVDVG-------FKVDGIIPISELS----SLHVEK--VSDVL 62

Query: 1088 SINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            S   E +L  L +   +  +S + V      + +Q  +  G+++   ++ ++ G  GLVV
Sbjct: 63   SEGDELELKVLKVEDDELILSKRAVQAEKAWETLQAALDSGEVIEAEVADVVKG--GLVV 120

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             +G  + G +            P S  +    +  S Y +G+ ++ KV+E+ +       
Sbjct: 121  DLG--VRGFI------------PASLVERHYVEDFSDY-KGRTLRLKVVELDKEANKLI- 164

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
              LS R+ LD              +   K  E +  L P  +V+G V+ +T  G F+ + 
Sbjct: 165  --LSQRAVLDE-------------EVEAKKKEVLASLQPGDVVEGTVQRLTDFGAFVDVG 209

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S L+   VE+P +    G  V  +VLSV+P S+RV +++K +      Q E
Sbjct: 210  -GVDGLVHISQLAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIKETLPGPWEQVE 268

Query: 1326 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1385
                  +  GD++ G +KR+ S+G F+ +    + GL H+S+++  H+     +   GE+
Sbjct: 269  ----GTIQPGDVIEGTVKRLVSFGAFVEV-APGVEGLVHISQIANRHIGTPGEVLSEGER 323

Query: 1386 VKVKILKVDKEKRRISLGMK 1405
            V+ K+L V+  ++RISL ++
Sbjct: 324  VQAKVLDVNISEKRISLSIR 343



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 141/341 (41%), Gaps = 21/341 (6%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G VV GKV  V+   A V     V  + P+  +S   + K       G EL  +VL V+ 
Sbjct: 18  GDVVSGKVTKVEDKQAFVDVGFKVDGIIPISELSSLHVEKVSDVLSEGDELELKVLKVED 77

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
             + ++ +    +     L +  ++ +  +    +  + K G  V    GV+GF P S L
Sbjct: 78  DELILSKRAVQAEKAWETLQAALDSGE--VIEAEVADVVKGGLVVDL--GVRGFIPAS-L 132

Query: 485 GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSL 538
                 E  S Y  G+ ++ +++      + +  S+R  L   ++  +      ++ G +
Sbjct: 133 VERHYVEDFSDYK-GRTLRLKVVELDKEANKLILSQRAVLDEEVEAKKKEVLASLQPGDV 191

Query: 539 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 597
           V G V  +T     V V   G   G +    LA H         V+K G     ++L +D
Sbjct: 192 VEGTVQRLTDFGAFVDV---GGVDGLVHISQLAHH--RVETPAEVVKEGDAVKVKVLSVD 246

Query: 598 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
            +S  + LS K +L    +Q+      I P  V+ G V  ++  G FV     + G    
Sbjct: 247 PDSERVSLSIKETLPGPWEQVEG---TIQPGDVIEGTVKRLVSFGAFVEVAPGVEGLVHI 303

Query: 658 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
           S+  +       +    G+ V++ +LDVN    RI+LS+++
Sbjct: 304 SQIANRHIGTPGEVLSEGERVQAKVLDVNISEKRISLSIRE 344



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            L++L  GD+V G ++R+  +G F+ +   +  GL H+S+L+   V+    + + G+ VKV
Sbjct: 183  LASLQPGDVVEGTVQRLTDFGAFVDVGGVD--GLVHISQLAHHRVETPAEVVKEGDAVKV 240

Query: 1389 KILKVDKEKRRISLGMKSS 1407
            K+L VD +  R+SL +K +
Sbjct: 241  KVLSVDPDSERVSLSIKET 259



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           + ++PG VV+G V  +  FGA V   GGV  L  +  ++   +  P +  K G  +  +V
Sbjct: 184 ASLQPGDVVEGTVQRLTDFGAFVDV-GGVDGLVHISQLAHHRVETPAEVVKEGDAVKVKV 242

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   S+R++++ K+TL      +  +        +  G + ++   G FV    GV+G
Sbjct: 243 LSVDPDSERVSLSIKETLPGPWEQVEGTIQPGD---VIEGTVKRLVSFGAFVEVAPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               S++       P  +   G+ V+ +++    + +RI+LS 
Sbjct: 300 LVHISQIANRHIGTPGEVLSEGERVQAKVLDVNISEKRISLSI 342



 Score = 48.1 bits (113), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 128/295 (43%), Gaps = 48/295 (16%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + G+ +   V+ ++KE    +L+L   Q  + D+ V+    
Sbjct: 127  FIPASLVERHYVEDFSD--YKGRTLRLKVVELDKEAN--KLILS--QRAVLDEEVEAKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             +   +  GD+V G + ++     G  V +G  + G VH ++L +  V  P     EG  
Sbjct: 181  EVLASLQPGDVVEGTVQRLTDF--GAFVDVG-GVDGLVHISQLAHHRVETPAEVVKEGDA 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      +  V LS++ +L G               P + +E
Sbjct: 238  -----------VKVKVLSVDPD---SERVSLSIKETLPG---------------PWEQVE 268

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
                + P  +++G VK + S G F+ ++  ++  V +S +++ ++ +P +    G+ V  
Sbjct: 269  GT--IQPGDVIEGTVKRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPGEVLSEGERVQA 326

Query: 1298 RVLSVEPLSKRVEVTLK--------TSDSRTASQSEINNLSNLHVGDIVIGQIKR 1344
            +VL V    KR+ ++++            R   +S     S   +GD++  ++K+
Sbjct: 327  KVLDVNISEKRISLSIRELLDDAGSNQSDREVYESTNEESSGFSLGDMIGDELKK 381



 Score = 44.3 bits (103), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 112/279 (40%), Gaps = 46/279 (16%)

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 593
           +G +VSG V  V      V V   G+   G IP   L+    H   +  V+  G E  +L
Sbjct: 17  VGDVVSGKVTKVEDKQAFVDV---GFKVDGIIPISELSSL--HVEKVSDVLSEGDEL-EL 70

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
            VL  E   L+LS +   + + +   +  + +    V+   V ++++ G  V    R  G
Sbjct: 71  KVLKVEDDELILSKRA--VQAEKAWETLQAALDSGEVIEAEVADVVKGGLVVDLGVR--G 126

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 713
           F P S        D S   Y G+++R  +++++ E  ++ LS +       +A       
Sbjct: 127 FIPASLVERHYVEDFSD--YKGRTLRLKVVELDKEANKLILSQRAVLDEEVEAK------ 178

Query: 714 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 773
             +E +A LQ                 G V+EG V    DFG   +F +   V G +   
Sbjct: 179 -KKEVLASLQP----------------GDVVEGTVQRLTDFG---AFVDVGGVDGLVHIS 218

Query: 774 QLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 805
           QLA   VE+       G  ++  +L V      V LS+K
Sbjct: 219 QLAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIK 257



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 304 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 363
             V IS +A   V    +  KEG  V+V++L         +  +K +           ++
Sbjct: 213 GLVHISQLAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIKETLPGPWEQVEGTIQ 272

Query: 364 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 423
           PG V++G V  + SFGA V+   GV+ L  +  ++   I  PG+    G  +  +VL V 
Sbjct: 273 PGDVIEGTVKRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPGEVLSEGERVQAKVLDVN 332

Query: 424 --SKRITVTHKKTL 435
              KRI+++ ++ L
Sbjct: 333 ISEKRISLSIRELL 346


>gi|408410414|ref|ZP_11181631.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
 gi|409350333|ref|ZP_11233493.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
 gi|407875408|emb|CCK83437.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
 gi|407877499|emb|CCK85551.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
          Length = 401

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 138/271 (50%), Gaps = 45/271 (16%)

Query: 1172 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1226
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1227 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1260
                    T++D P K      H E IE+            L    +V+G V  +T  G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTQFGA 212

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSP 271

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
              Q+     +NL+ GDI+ G++K + ++G F+ + +  + GL HVSE+S  HVD    + 
Sbjct: 272  FEQA----TANLNEGDIIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEISNKHVDKPSDVL 326

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1411
              G+KVKVK+L VD  +RRISL +K +  +N
Sbjct: 327  TVGQKVKVKVLNVDPSERRISLSIKQADPEN 357



 Score = 74.3 bits (181), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 121/251 (48%), Gaps = 24/251 (9%)

Query: 279 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 335
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 395
             H E +     +  AFE +    S +  G VV+G+V  +  FGA V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTQFGAFVDI-GGVDGLVHIS 226

Query: 396 HMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRL 453
            +S   + KP    KVG ++  +V+G+ +   RI+++ K+T         S + +AT  L
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTE-------PSPFEQATANL 279

Query: 454 ----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
               I  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++ 
Sbjct: 280 NEGDIIEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNV 339

Query: 510 IPASRRINLSF 520
            P+ RRI+LS 
Sbjct: 340 DPSERRISLSI 350



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 34/199 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD+V GR+S++     G  V IG  + G VH +E+    V  P         D L     
Sbjct: 197  GDVVEGRVSRLTQF--GAFVDIG-GVDGLVHISEISYKHVDKP--------SDVLK---V 242

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I                     +  N   LS     P    +   +L+  
Sbjct: 243  GQDVKVKVIGID--------------------NDRNRISLSIKQTEPSPFEQATANLNEG 282

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             I++G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+V+P 
Sbjct: 283  DIIEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPS 342

Query: 1306 SKRVEVTLKTSDSRTASQS 1324
             +R+ +++K +D   AS S
Sbjct: 343  ERRISLSIKQADPENASSS 361



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 151/369 (40%), Gaps = 45/369 (12%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVKPGKKFKVGA 413
           +VKPG +V   V++V+     V   G GV+ +      +        E VKPG  FK   
Sbjct: 16  EVKPGDIVDVNVLSVEDGQINVGVQGAGVEGVITRRDFTNDRSVNLREAVKPGDTFKA-- 73

Query: 414 ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 473
             V R  G   +        T VK + A      +  +     G +T   + G  V    
Sbjct: 74  -YVVRRAGGDKENGEFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSSVRGGLLVDV-- 130

Query: 474 GVQGFAPRSELG------LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPT 525
           G +GF P S +       L P        ++G+ +K +I    PA  R+ LS   +++  
Sbjct: 131 GTRGFLPASLISNRFVSDLKP--------YIGKTIKVKITEIDPAKNRLILSHKELIEEE 182

Query: 526 RVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 581
           R    + V     +G +V G V  +T     V +   G   G +    ++   +H     
Sbjct: 183 REQAFENVASQLVVGDVVEGRVSRLTQFGAFVDI---GGVDGLVHISEIS--YKHVDKPS 237

Query: 582 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 640
            V+K G +   +++ +DN+ + + LS K +  +  +Q     ++++   ++ G V ++  
Sbjct: 238 DVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQA---TANLNEGDIIEGEVKSLTN 294

Query: 641 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS- 699
            G FV     + G    S+  +      S    VGQ V+  +L+V+    RI+LS+KQ+ 
Sbjct: 295 FGAFVEVADGIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPSERRISLSIKQAD 354

Query: 700 ---CCSSTD 705
                SS D
Sbjct: 355 PENASSSND 363



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 140/365 (38%), Gaps = 53/365 (14%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 529
           GV+G   R +   D           G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLREAVKPGDTFKAYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 530 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 587 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 645
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  + + G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTQFGAFV 214

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSP-- 271

Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
                     E+  A L                  G +IEG+V    +FG  V  E    
Sbjct: 272 ---------FEQATANLNE----------------GDIIEGEVKSLTNFGAFV--EVADG 304

Query: 766 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 818
           + G +   +++   V+        G  ++  +L+V  +ER + LS+K    +    +N  
Sbjct: 305 IQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPSERRISLSIKQADPENASSSNDR 364

Query: 819 RQAQK 823
            +A++
Sbjct: 365 PRARR 369


>gi|297243679|ref|ZP_06927610.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
 gi|415709775|ref|ZP_11463354.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
 gi|296888430|gb|EFH27171.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
 gi|388055777|gb|EIK78662.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
          Length = 500

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 184/407 (45%), Gaps = 58/407 (14%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----P 64

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            + E S  ++      +    T   L + KE K  RL+L   +        DI        
Sbjct: 65   SRELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------ 118

Query: 1123 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
            I + D IV G + + + G  GL+V IG   +      E++ +    P  G          
Sbjct: 119  IKDADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG---------- 166

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
                 Q +K K+LE+ +      +V LS R  L+   S                   +  
Sbjct: 167  -----QKIKAKILELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQ 205

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL 
Sbjct: 206  LKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLD 264

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLV 1360
            V+   +R+ ++LK +      +      +  HV G +V G++ ++  +G+FI++E+  + 
Sbjct: 265  VDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIE 318

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            GL H+SEL+  HV+N ET+ +A E V VK++ VD ++RRISL +K +
Sbjct: 319  GLVHISELANRHVENPETVVKANEDVFVKVIDVDLDRRRISLSLKQA 365



 Score = 47.4 bits (111), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 112/254 (44%), Gaps = 21/254 (8%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 507
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 508 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 568 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
            P  VV G V  I++ G F+     + G    S+  +    +        + V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEDVFVKVIDV 351

Query: 686 NSETGRITLSLKQS 699
           + +  RI+LSLKQ+
Sbjct: 352 DLDRRRISLSLKQA 365



 Score = 44.7 bits (104), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 771 THHQLAGATVESGSVIQAA-------ILDVAKAERLVDLSLK 805
              +LA   VE+   +  A       ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKANEDVFVKVIDVDLDRRRISLSLK 363


>gi|430750092|ref|YP_007213000.1| 30S ribosomal protein S1 [Thermobacillus composti KWC4]
 gi|430734057|gb|AGA58002.1| ribosomal protein S1 [Thermobacillus composti KWC4]
          Length = 411

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 178/387 (45%), Gaps = 66/387 (17%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ-----RRFHIGKAVTG 1084
            G  V G V K+++  A +++        +  D      EL   Q         +G+ +  
Sbjct: 38   GDIVKGTVIKIEDNQAYVSLG-------YKYDGVIPLRELSAVQLDNAADAVQVGQELEL 90

Query: 1085 HVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1142
             V+SI+ +K+  RLVL       S + VD     D +Q    +G+++   ++ ++ G  G
Sbjct: 91   KVISIDDDKE--RLVL-------SKRQVDAGKAWDRLQEQFEKGEVLEVTVADVVKG--G 139

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
            LVV +G  + G +            P S  +    +  S Y +GQ ++ K+ E+ R    
Sbjct: 140  LVVDVG--VRGFI------------PASMVERHYVEDFSSY-KGQTLRVKIKELDRE--- 181

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
            T  V LS +  L+     N   +             +E L P  I++G V+ +T  G F+
Sbjct: 182  TNKVILSAKEVLEEEYEANKRRI-------------MESLEPGQIIEGTVQRLTPFGAFV 228

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
             +   +D  V +S L+  +V  P      G+ V  +VL V+P + ++ +++K      A+
Sbjct: 229  DIG-GIDGLVHVSELAWEHVAHPRDVVSEGQQVKVKVLKVDPEAGKISLSIK------AA 281

Query: 1323 QSEINNLS--NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
            Q     L+    H GDIV G +KR+ S+G F+ +    + GL H+S+++  H+     + 
Sbjct: 282  QPGPWELAADKFHNGDIVTGTVKRIVSFGAFVEV-APGVEGLVHISQIAHRHIATPHEVL 340

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + G++VK K+L  +  ++RISL +K +
Sbjct: 341  KEGQEVKAKVLDFNPAEKRISLSIKET 367



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 148/357 (41%), Gaps = 43/357 (12%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K G +VKG VI ++   A V        + PL  +S  ++       +VG EL  +V+ 
Sbjct: 35  LKKGDIVKGTVIKIEDNQAYVSLGYKYDGVIPLRELSAVQLDNAADAVQVGQELELKVIS 94

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 473
           +         K+ LV SK  +     +A DRL        +    +  + K G  V    
Sbjct: 95  IDD------DKERLVLSKRQV--DAGKAWDRLQEQFEKGEVLEVTVADVVKGGLVVDV-- 144

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPT 525
           GV+GF P S +      E  S Y  GQ ++ +I      + ++ LS        +     
Sbjct: 145 GVRGFIPASMVERHY-VEDFSSYK-GQTLRVKIKELDRETNKVILSAKEVLEEEYEANKR 202

Query: 526 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 585
           R+ E   ++ G ++ G V  +TP    V +   G   G +    LA   EH    + V+ 
Sbjct: 203 RIMES--LEPGQIIEGTVQRLTPFGAFVDI---GGIDGLVHVSELA--WEHVAHPRDVVS 255

Query: 586 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETG 642
            G +   ++L +D E+  + LS     I +AQ  P +  A   H   +V G V  I+  G
Sbjct: 256 EGQQVKVKVLKVDPEAGKISLS-----IKAAQPGPWELAADKFHNGDIVTGTVKRIVSFG 310

Query: 643 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            FV     + G    S+      A   +    GQ V++ +LD N    RI+LS+K++
Sbjct: 311 AFVEVAPGVEGLVHISQIAHRHIATPHEVLKEGQEVKAKVLDFNPAEKRISLSIKET 367



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 115/284 (40%), Gaps = 48/284 (16%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHL-ADHLEHATVMKSVIKPGYEF 590
           +K G +V G V  +  N   V +   GY   G IP   L A  L++A      ++ G E 
Sbjct: 35  LKKGDIVKGTVIKIEDNQAYVSL---GYKYDGVIPLRELSAVQLDNAA---DAVQVGQEL 88

Query: 591 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
           + +++ +D++   L+LS +   +++ +             V+   V ++++ G  V    
Sbjct: 89  ELKVISIDDDKERLVLSKRQ--VDAGKAWDRLQEQFEKGEVLEVTVADVVKGGLVVDVGV 146

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
           R  GF P S        D S   Y GQ++R  I +++ ET ++ LS K+           
Sbjct: 147 R--GFIPASMVERHYVEDFSS--YKGQTLRVKIKELDRETNKVILSAKE----------- 191

Query: 710 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 769
               +LEE+        +  ++ + +E    G +IEG V     FG  V       + G 
Sbjct: 192 ----VLEEE--------YEANKRRIMESLEPGQIIEGTVQRLTPFGAFVDI---GGIDGL 236

Query: 770 ITHHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKT 806
           +   +LA          V  G  ++  +L V      + LS+K 
Sbjct: 237 VHVSELAWEHVAHPRDVVSEGQQVKVKVLKVDPEAGKISLSIKA 280


>gi|222151374|ref|YP_002560530.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402]
 gi|222120499|dbj|BAH17834.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402]
          Length = 387

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 108/191 (56%), Gaps = 16/191 (8%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  ++++++    +++G V  +T+ G F+ +  ++D  V +S ++  +++  E    IG 
Sbjct: 181  KKEQRLDEIEVGSVIEGEVLRITNFGAFVDIG-EVDGLVHISQITHDHIDKVEDALSIGD 239

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             V  +VLSV+  ++RV +++K +        E        +GDIV G++ R+ ++G F+ 
Sbjct: 240  KVKVKVLSVDKEAERVSLSMKAALPGPFETIE----EKFSIGDIVDGEVVRLANFGAFVE 295

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK-------- 1405
            I +  L GL H+S++S DH+ N   +   G+KVKVKIL ++KE++RI L +K        
Sbjct: 296  I-DKGLQGLVHISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSIKATQEQVED 354

Query: 1406 --SSYFKNDAD 1414
              ++Y  ND++
Sbjct: 355  FDTTYLSNDSN 365



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            +G+++  ++  ++    RV +  K  ++      +   L  + VG ++ G++ R+ ++G 
Sbjct: 148  VGQVLTLKIEELDQEKNRVILNHKVIEAEENKVKKEQRLDEIEVGSVIEGEVLRITNFGA 207

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            F+ I   +  GL H+S+++ DH+D +E     G+KVKVK+L VDKE  R+SL MK++
Sbjct: 208  FVDIGEVD--GLVHISQITHDHIDKVEDALSIGDKVKVKVLSVDKEAERVSLSMKAA 262



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 6/179 (3%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           +++ G V++G+V+ + +FGA V   G V  L  +  ++   I K      +G ++  +VL
Sbjct: 188 EIEVGSVIEGEVLRITNFGAFVDI-GEVDGLVHISQITHDHIDKVEDALSIGDKVKVKVL 246

Query: 421 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
            V  +++R++++ K  L      I   ++      I  G + ++   G FV    G+QG 
Sbjct: 247 SVDKEAERVSLSMKAALPGPFETIEEKFSIGD---IVDGEVVRLANFGAFVEIDKGLQGL 303

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGS 537
              S++  D    PS +   GQ VK +I+      +RI LS      +V + D   L +
Sbjct: 304 VHISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSIKATQEQVEDFDTTYLSN 362



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 150/366 (40%), Gaps = 34/366 (9%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           +++ G  VKG V A++    ++   G     + P+  +S   I    +  ++G E+   V
Sbjct: 12  EIQEGDKVKGTVQAIEEKHVVLNLDGAKYDGIIPISQLSSLHIENAEEVVQIGDEIEAFV 71

Query: 420 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGV 475
             ++ K     +   L K +L    S+    ++          + +  K G  V    G+
Sbjct: 72  TKIEDKEEDGHY--ILSKRQLDESESFESLKEKFENGETLEAEVKEAVKGGLVVDV--GL 127

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSED-- 530
           +GF P S +  +   E  S Y VGQV+  +I        R+ L+  +   +  +V ++  
Sbjct: 128 RGFIPASLISTNY-IEDFSSY-VGQVLTLKIEELDQEKNRVILNHKVIEAEENKVKKEQR 185

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHATVMKSVIK 585
            D +++GS++ G V  +T     V +   G   G +    +     D +E A  +   +K
Sbjct: 186 LDEIEVGSVIEGEVLRITNFGAFVDI---GEVDGLVHISQITHDHIDKVEDALSIGDKVK 242

Query: 586 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
                 ++L +D E+  + LS K +L    + +    S      +V G V  +   G FV
Sbjct: 243 V-----KVLSVDKEAERVSLSMKAALPGPFETIEEKFS---IGDIVDGEVVRLANFGAFV 294

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK--QSCCSS 703
                L G    S+       + S+    GQ V+  ILD+N E  RI LS+K  Q     
Sbjct: 295 EIDKGLQGLVHISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSIKATQEQVED 354

Query: 704 TDASFM 709
            D +++
Sbjct: 355 FDTTYL 360



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 27/224 (12%)

Query: 902  RLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 961
            R++L  K I E E +  K+ ++    +VGS+++ E+  I      +  G    G +HI++
Sbjct: 165  RVILNHKVI-EAEENKVKKEQRLDEIEVGSVIEGEVLRITNFGAFVDIG-EVDGLVHISQ 222

Query: 962  VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1021
            +  D  + VE+  S   IG  V  ++++  +K   + S   + ++     T+ E      
Sbjct: 223  ITHDHIDKVEDALS---IGDKVKVKVLS-VDKEAERVSLSMKAALPGPFETIEE------ 272

Query: 1022 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFH 1077
                  SIG  V G V ++ N  A + I + L+  + I   +++    PSE+ E      
Sbjct: 273  ----KFSIGDIVDGEVVRLANFGAFVEIDKGLQGLVHISQISHDHIGNPSEVLE------ 322

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISD-KTVDISNDNMQ 1120
             G+ V   +L INKE+K + L ++  Q+ + D  T  +SND+ Q
Sbjct: 323  PGQKVKVKILDINKEEKRIGLSIKATQEQVEDFDTTYLSNDSNQ 366



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 52/245 (21%)

Query: 596 LDNESSNLLLS-----AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           LD E + ++L+     A+ + +   Q+L      I   SV+ G V  I   G FV  +G 
Sbjct: 159 LDQEKNRVILNHKVIEAEENKVKKEQRL----DEIEVGSVIEGEVLRITNFGAFVD-IGE 213

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+        +     +G  V+  +L V+ E  R++LS+K +     +     
Sbjct: 214 VDGLVHISQITHDHIDKVEDALSIGDKVKVKVLSVDKEAERVSLSMKAALPGPFET---- 269

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF- 769
               +EEK                   F IG +++G+V    +FG  V  +    + G  
Sbjct: 270 ----IEEK-------------------FSIGDIVDGEVVRLANFGAFVEID--KGLQGLV 304

Query: 770 ----ITHHQLAGAT--VESGSVIQAAILDVAKAERLVDLSLKTV------FIDRFREANS 817
               I+H  +   +  +E G  ++  ILD+ K E+ + LS+K        F   +   +S
Sbjct: 305 HISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSIKATQEQVEDFDTTYLSNDS 364

Query: 818 NRQAQ 822
           N++ Q
Sbjct: 365 NQENQ 369


>gi|297626694|ref|YP_003688457.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp.
            shermanii CIRM-BIA1]
 gi|296922459|emb|CBL57032.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp.
            shermanii CIRM-BIA1]
          Length = 484

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 66/411 (16%)

Query: 1009 SMLTVSEIGSKLLFEEC-DVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + V +IGS   FE   D +I     G  V G V KVD +  LL I       + ++  
Sbjct: 9    NQVAVDDIGSAEAFEAAVDSTIKYFNDGDIVKGTVVKVDRDEVLLDIGYKTEGVIPSKEL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+        +G  +    L   KE K  RL+L   +        + +   
Sbjct: 69   SIKHDVDPFEV------VSVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGT 115

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
            ++    E  +V G + +++ G  GL+V IG   +      E++ +    P  G       
Sbjct: 116  IEKIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG------- 166

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
                    Q ++ K++E+ +      +V LS R+ L+   S    +              
Sbjct: 167  --------QELEAKIIELDKNRN---NVVLSRRAWLEQTQSETRHNF------------- 202

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            ++ L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   
Sbjct: 203  LQQLQKGQIRKGIVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVE 261

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIEN 1356
            VL V+   +RV ++LK      A+Q +   L +  H +G+IV G++ ++  +G F+ +E 
Sbjct: 262  VLDVDMERERVSLSLK------ATQEDPWQLFARTHQIGEIVPGKVTKLVPFGAFVRVEE 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL HVSEL+E HV+  E +   G++V VKI+ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHVSELAERHVEIPEQVVSVGDEVLVKIIDIDLERRRISLSLKQA 365



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 158/368 (42%), Gaps = 32/368 (8%)

Query: 346 ILKASAFEGLVFTHSDVK---PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 402
           I  A AFE  V   S +K    G +VKG V+ VD    ++      + + P   +S    
Sbjct: 16  IGSAEAFEAAV--DSTIKYFNDGDIVKGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHD 73

Query: 403 VKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           V P +   VG E+   V   + K  R+ ++ K+   +     +    E  D ++T G + 
Sbjct: 74  VDPFEVVSVGDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVI 131

Query: 461 KIEKHGCFVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPA 512
           ++ K G  V    G++GF P S  E+      +P    +VGQ ++ +I+      +++  
Sbjct: 132 EVVKGGLIVDI--GLRGFLPASLVEMRRVRDLQP----YVGQELEAKIIELDKNRNNVVL 185

Query: 513 SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA- 571
           SRR  L      TR +    ++ G +  G+V  +      V +   G   G +    L+ 
Sbjct: 186 SRRAWLEQTQSETRHNFLQQLQKGQIRKGIVSSIVNFGAFVDL---GGVDGLVHVSELSW 242

Query: 572 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 631
            H++H + +  V +P     ++L +D E   + LS K +      QL +    I    +V
Sbjct: 243 KHIDHPSEVVEVGQPVTV--EVLDVDMERERVSLSLKATQ-EDPWQLFARTHQI--GEIV 297

Query: 632 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
            G V  ++  G FVR    + G    S+  +       +   VG  V   I+D++ E  R
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHVSELAERHVEIPEQVVSVGDEVLVKIIDIDLERRR 357

Query: 692 ITLSLKQS 699
           I+LSLKQ+
Sbjct: 358 ISLSLKQA 365


>gi|218290944|ref|ZP_03495001.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239109|gb|EED06312.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 385

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 169/391 (43%), Gaps = 56/391 (14%)

Query: 1021 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1076
            +  +  V  G  VTG V  VD+    + +      H+  Q         PS++       
Sbjct: 8    MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDV------V 61

Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
             +G  VT  VL ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 62   SVGSTVTAQVLKVDMESGHVTLSKRRAEQASA-------WERMQQLLESGEPIEVEIRDV 114

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
            + G  GLV  +G   +               P S  D    + L  + +GQ ++ KV+E+
Sbjct: 115  VKG--GLVADVGVRAF--------------IPASLVDRHFVENLEQF-KGQKLRAKVVEV 157

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
                       LS R+ L+  S   +  L              E+L P  +++G V+ +T
Sbjct: 158  DPHKNKLI---LSRRAVLEEESEARARKL-------------FEELKPGDVIEGTVQRLT 201

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
              G F+ +    D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +
Sbjct: 202  DFGAFVDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAA 260

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
                  +         H GD+V G ++RV  +G F+ +    L GL HVS++S +HVD  
Sbjct: 261  ----LPEPWETYAHEFHPGDVVQGVVRRVVDFGAFVEL-RPGLEGLVHVSQISNEHVDKP 315

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + + G++V V++L VD E++RISL M+ S
Sbjct: 316  SDVLQPGQEVTVRVLSVDPERKRISLSMRDS 346



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 145/358 (40%), Gaps = 31/358 (8%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           + T + V+ G VV G+V AVD  G  V  P G +       +S      P     VG+ +
Sbjct: 8   MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTV 67

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 470
             +VL V  +   VT  K     + A  +S  E   +L+  G   ++E     K G    
Sbjct: 68  TAQVLKVDMESGHVTLSK-----RRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVAD 122

Query: 471 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
              GV+ F P S +  D     +     GQ ++ +++   P   ++ LS        SE 
Sbjct: 123 V--GVRAFIPASLV--DRHFVENLEQFKGQKLRAKVVEVDPHKNKLILSRRAVLEEESEA 178

Query: 531 DLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 583
              KL      G ++ G V  +T     V V   G + G +    L+  H+ H +    V
Sbjct: 179 RARKLFEELKPGDVIEGTVQRLTDFGAFVDV---GGADGLVHISELSFSHVNHPS---EV 232

Query: 584 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
           ++ G     ++L +D E+  + LS K +L    +     A   HP  VV G V  +++ G
Sbjct: 233 VREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETY---AHEFHPGDVVQGVVRRVVDFG 289

Query: 643 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
            FV     L G    S+  +      S     GQ V   +L V+ E  RI+LS++ S 
Sbjct: 290 AFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSS 347



 Score = 41.2 bits (95), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 153/363 (42%), Gaps = 36/363 (9%)

Query: 87  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGID----VK 141
           L + L+   V+EG V+T  V +++DHG  +   LP  + G +    L+   G      V 
Sbjct: 5   LREMLTDAAVREGDVVTGEVTAVDDHGVTV--ALPHGYEGHISPQELSAVPGTHPSDVVS 62

Query: 142 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 201
            G  +   V  +D     V LS      +    +  +     LL  G  +   ++ +++ 
Sbjct: 63  VGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQQ-----LLESGEPIEVEIRDVVKG 117

Query: 202 GVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 258
           G++  +    +   + VD   ++N         +  + +K+ A+++ VDP    + L+  
Sbjct: 118 GLVADVGVRAFIPASLVDRHFVENL--------EQFKGQKLRAKVVEVDPHKNKLILSRR 169

Query: 259 PYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
             L        R     +K GD+ + +     D   G  +D+          V IS+++ 
Sbjct: 170 AVLEEESEARARKLFEELKPGDVIEGTVQRLTD--FGAFVDVGGAD----GLVHISELSF 223

Query: 314 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
             V    +  +EG  V+VR+L      G  +  +KA+  E       +  PG VV+G V 
Sbjct: 224 SHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFHPGDVVQGVVR 283

Query: 374 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 431
            V  FGA V+   G++ L  +  +S   + KP    + G E+  RVL V  + KRI+++ 
Sbjct: 284 RVVDFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSM 343

Query: 432 KKT 434
           + +
Sbjct: 344 RDS 346


>gi|380302401|ref|ZP_09852094.1| 30S ribosomal protein S1 [Brachybacterium squillarum M-6-3]
          Length = 494

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 184/402 (45%), Gaps = 65/402 (16%)

Query: 1017 GSKLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPS 1067
            G+  L    D +I     G  V G V KVD++  LL I       + ++   +     P 
Sbjct: 16   GADELMAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPD 75

Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1127
            E+ E      +G  +   VL   KE K  RL+L   +        + +   ++    +  
Sbjct: 76   EVVE------VGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIEQIKEDEG 122

Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQ 1187
            +V GR+ +++ G  GL+V IG   +      E++ +    P  G               Q
Sbjct: 123  VVTGRVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG---------------Q 165

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             ++ K++E+ +      +V LS R+ L+   S   SD              ++ L    +
Sbjct: 166  EIEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSDF-------------LQTLQKGQV 209

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
             +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +
Sbjct: 210  REGAVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLDVDMDRE 268

Query: 1308 RVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
            RV ++LK      A+Q +   L +  H +G++V G++ ++  +G F+ +E+  + GL H+
Sbjct: 269  RVSLSLK------ATQEDPWQLFARTHAIGEVVPGKVTKLVPFGAFVRVED-GIEGLVHI 321

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            SEL++ HVD  E +    + V VK++ +D E+RRISL +K +
Sbjct: 322  SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQA 363



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 2/159 (1%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   VL 
Sbjct: 204 LQKGQVREGAVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLD 262

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           V   R  V+      +     L +   A   ++  G +TK+   G FVR  +G++G    
Sbjct: 263 VDMDRERVSLSLKATQEDPWQLFARTHAIGEVVP-GKVTKLVPFGAFVRVEDGIEGLVHI 321

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           SEL       P  +  V Q V  +++      RRI+LS 
Sbjct: 322 SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSL 360



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 163/392 (41%), Gaps = 44/392 (11%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEIEALVLQKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEQIKE--DEGVVTGRVIEVVKGGLIVDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFLQTLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  G V  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 206 KGQVREGAVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVKVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 260 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHAIGEVVPGKVTKLVPFGAFVRVEDGI 315

Query: 652 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSC----CSSTDA 706
            G    S+    +  DL  +   V Q V   ++D++ E  RI+LSLKQ+         D+
Sbjct: 316 EGLVHISELAQ-RHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQANEGVDPEGDDS 374

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 738
           +F    +       M      NG E K+ +GF
Sbjct: 375 TFDPALY------GMAAEYDENG-EYKYPDGF 399



 Score = 45.1 bits (105), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 145/375 (38%), Gaps = 64/375 (17%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G + K++     +      +G  P  EL +     P  +  VG  ++  ++  
Sbjct: 32  NDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEIEALVLQK 91

Query: 510 IPASRRINLSFMMKP--------TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 561
                R+ LS              ++ ED+      +V+G V  V    ++V +  +G+ 
Sbjct: 92  EDKEGRLILSKKRAQYERAWGTIEQIKEDE-----GVVTGRVIEVVKGGLIVDIGLRGFL 146

Query: 562 KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPS 620
             ++        +E   V       G E + +++ LD   +N++LS +  L  +   + S
Sbjct: 147 PASL--------VEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRS 198

Query: 621 D-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
           D    +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V+
Sbjct: 199 DFLQTLQKGQVREGAVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQKVK 257

Query: 680 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 739
             +LDV+ +  R++LSLK +                +E    L +  H            
Sbjct: 258 VEVLDVDMDRERVSLSLKAT----------------QEDPWQLFARTH-----------A 290

Query: 740 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG---------ATVESGSVIQAAI 790
           IG V+ GKV +   FG  V  E+   + G +   +LA           TV+    ++  +
Sbjct: 291 IGEVVPGKVTKLVPFGAFVRVEDG--IEGLVHISELAQRHVDLPEQVVTVDQDVFVK--V 346

Query: 791 LDVAKAERLVDLSLK 805
           +D+    R + LSLK
Sbjct: 347 IDIDLERRRISLSLK 361



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 60/294 (20%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
           G +V G V  V  + V++ +   GY ++G IP+  L+  ++H      V++ G E + L+
Sbjct: 34  GDIVEGTVVKVDHDEVLLDI---GYKTEGVIPSRELS--IKHDVNPDEVVEVGDEIEALV 88

Query: 595 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
           +  +++   L+LS K +    A    +Q+  D        VV G V  +++ G  V    
Sbjct: 89  LQKEDKEGRLILSKKRAQYERAWGTIEQIKED------EGVVTGRVIEVVKGGLIVDI-- 140

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDA 706
            L GF P S     +  DL    YVGQ + + I++++     + LS +   +   S+  +
Sbjct: 141 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRS 198

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
            F+Q           LQ                 G V EG V    +FG  V       V
Sbjct: 199 DFLQ----------TLQK----------------GQVREGAVSSIVNFGAFVDL---GGV 229

Query: 767 YGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
            G +   +L+          VE G  ++  +LDV      V LSLK    D ++
Sbjct: 230 DGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLDVDMDRERVSLSLKATQEDPWQ 283


>gi|328944315|ref|ZP_08241779.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829]
 gi|327491234|gb|EGF23009.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829]
          Length = 409

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 188/409 (45%), Gaps = 65/409 (15%)

Query: 1025 CDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGK 1080
             D   G  VTG V K++++  LL I       + A+   +     P EL       H+G 
Sbjct: 41   TDFDEGDLVTGTVVKIEHDEVLLDIGFKSEGVIPARELSIRKDASPEEL------VHMGD 94

Query: 1081 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILS 1138
             +   VL   KE K  RL+L       S K  +     + ++     G  V G + +++ 
Sbjct: 95   TIEALVL--QKEDKEGRLIL-------SKKRAEYERAWNAVEEKFKAGVNVEGEVIEVVK 145

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            G  GL++ IG  L G +            P S  D  +   LS Y  G  ++ +V+E+ R
Sbjct: 146  G--GLILDIG--LRGFL------------PASLVDLRRVKDLSAY-MGTRIEARVIEMDR 188

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                  +V LS R  L+       S++ T              L P M ++G V ++   
Sbjct: 189  NRN---NVVLSRRVVLEAARKAERSEILTK-------------LKPGMKLKGTVSSIVEF 232

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ L   +D  + +S LS  +V  P +   +G+ V  +VL ++   +R+ + LK    
Sbjct: 233  GAFVDLG-GIDGLIHISELSWNHVNHPAEVVKVGQEVEVQVLDIDLNRERISLGLK---- 287

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
            +T        +    +G IV G + ++ ++G F+ + N  + GL H+SE+++ HVD    
Sbjct: 288  QTTEDPWRVLVKKYPIGAIVEGTVTKLVTFGAFVDLGN-GVEGLVHISEMAKAHVDAPAQ 346

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            + + G+ V+VK++++D E+RRISL +K++     A+ L    +EE+++A
Sbjct: 347  VCKVGDVVQVKVMEIDLERRRISLSIKAA-----AETLGTDQDEEANDA 390



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +KPGM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL 
Sbjct: 216 LKPGMKLKGTVSSIVEFGAFVDL-GGIDGLIHISELSWNHVNHPAEVVKVGQEVEVQVLD 274

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           +    +RI++  K+T       ++  Y       I  G +TK+   G FV   NGV+G  
Sbjct: 275 IDLNRERISLGLKQTTEDPWRVLVKKYPIGA---IVEGTVTKLVTFGAFVDLGNGVEGLV 331

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SE+       P+ +  VG VV+ ++M      RRI+LS 
Sbjct: 332 HISEMAKAHVDAPAQVCKVGDVVQVKVMEIDLERRRISLSI 372



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 157/390 (40%), Gaps = 62/390 (15%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G + KIE     +      +G  P  EL +     P  + H+G  ++  ++      
Sbjct: 48  LVTGTVVKIEHDEVLLDIGFKSEGVIPARELSIRKDASPEELVHMGDTIEALVLQKEDKE 107

Query: 514 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
            R+ LS     +      V E    K G  V G V  V    +++ +  +G+   ++   
Sbjct: 108 GRLILSKKRAEYERAWNAVEEK--FKAGVNVEGEVIEVVKGGLILDIGLRGFLPASLVDL 165

Query: 569 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 627
                L  +  M + I+      +++ +D   +N++LS +  L  + +   S+  + + P
Sbjct: 166 RRVKDL--SAYMGTRIEA-----RVIEMDRNRNNVVLSRRVVLEAARKAERSEILTKLKP 218

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
              + G V +I+E G FV  LG + G    S+         ++   VGQ V   +LD++ 
Sbjct: 219 GMKLKGTVSSIVEFGAFVD-LGGIDGLIHISELSWNHVNHPAEVVKVGQEVEVQVLDIDL 277

Query: 688 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 744
              RI+L LKQ+                              +E  W   V+ + IG+++
Sbjct: 278 NRERISLGLKQT------------------------------TEDPWRVLVKKYPIGAIV 307

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAE 797
           EG V +   FG  V     + V G +   ++A A V++       G V+Q  ++++    
Sbjct: 308 EGTVTKLVTFGAFVDL--GNGVEGLVHISEMAKAHVDAPAQVCKVGDVVQVKVMEIDLER 365

Query: 798 RLVDLSLK----TVFIDRFREANSNRQAQK 823
           R + LS+K    T+  D+  EAN    A +
Sbjct: 366 RRISLSIKAAAETLGTDQDEEANDAAPADE 395


>gi|152990412|ref|YP_001356134.1| 30S ribosomal protein S1 [Nitratiruptor sp. SB155-2]
 gi|151422273|dbj|BAF69777.1| 30S ribosomal protein S1 [Nitratiruptor sp. SB155-2]
          Length = 558

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 158/342 (46%), Gaps = 44/342 (12%)

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1125
            P+    F+ +  IG+ +T  V+ I+ E   + +  + +   I  K  +I N      ++E
Sbjct: 147  PNSQSFFKNKPEIGRKITAKVIKIDPENDSIVISRKAYLQDIFKKREEIVN----QLLNE 202

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            G IV G I KI +   G+ V++ P + G VH+ E+           Y +G  +P   + E
Sbjct: 203  GTIVEGTIKKITNY--GMFVEVAPQVEGLVHYNEI----------SY-KGPVNPAKYFQE 249

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            G  V  K ++ ++  R      LS++++                  P    E   +L P 
Sbjct: 250  GDKVNVKAIDFNKEKRRLL---LSIKAT-----------------QPDPWEEIKGELEPG 289

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEP 1304
             ++   + N+   G F+ L   ++  + +S +S D   + P++    G+ +   V+ ++ 
Sbjct: 290  DVINVTISNIEPYGAFVDLGNDIEGLLHISEMSWDKRPKHPKEYVQEGQQLDVEVIEIDA 349

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
             ++++ V+LK    +   +     LSN   GD+V G++  +  +G F+ I   ++ GL H
Sbjct: 350  ENRKLRVSLKNLLPKPFEEF----LSNYKEGDVVEGEVTSLTDFGAFVRI--GSVEGLLH 403

Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
              ++S +     +  +  GEKV+VKI K+D++  +ISL  KS
Sbjct: 404  NQDISWEKGQKAKDAFNVGEKVEVKIAKIDRDNEKISLDRKS 445



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 113/491 (23%), Positives = 203/491 (41%), Gaps = 75/491 (15%)

Query: 322 KYKEGSCVRVRILGFR-------HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 374
           KY+ G  ++V + G R       H + LA   +KA      +  H D   G++++G +  
Sbjct: 74  KYQPGDTIKVMVSGHRNERPVISHKKALAKEKVKA-----FIEQHKDDFDGLILEGVIKG 128

Query: 375 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 432
            +  G IV+   GV+    LP+   F   KP    ++G ++  +V+ +  ++  I ++ K
Sbjct: 129 KNRGGYIVENDEGVQFF--LPNSQSFFKNKP----EIGRKITAKVIKIDPENDSIVISRK 182

Query: 433 KTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 487
             L      I     E  ++L     I  G I KI  +G FV     V+G    +E+   
Sbjct: 183 AYL----QDIFKKREEIVNQLLNEGTIVEGTIKKITNYGMFVEVAPQVEGLVHYNEISYK 238

Query: 488 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVT 547
               P+  +  G  V  + +      RR+ LS  +K T+    + +K G L  G V  VT
Sbjct: 239 GPVNPAKYFQEGDKVNVKAIDFNKEKRRLLLS--IKATQPDPWEEIK-GELEPGDVINVT 295

Query: 548 PNAVVVYVIAKGYSKGTIPTEHLADHL--EHATVMKSVIKPGYEFD-QLLVLDNESSNLL 604
            + +  Y              H+++    +     K  ++ G + D +++ +D E+  L 
Sbjct: 296 ISNIEPYGAFVDLGNDIEGLLHISEMSWDKRPKHPKEYVQEGQQLDVEVIEIDAENRKLR 355

Query: 605 LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV--D 662
           +S K  L    ++     S+     VV G V ++ + G FVR +G + G           
Sbjct: 356 VSLKNLLPKPFEEF---LSNYKEGDVVEGEVTSLTDFGAFVR-IGSVEGLLHNQDISWEK 411

Query: 663 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 722
           GQ+A     + VG+ V   I  ++ +  +I+L  ++S   S    F +EH          
Sbjct: 412 GQKA--KDAFNVGEKVEVKIAKIDRDNEKISLD-RKSLLESPLEKFAKEH---------- 458

Query: 723 QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH---HQLAGAT 779
                            +G +++G V +  +FGV V+ +E+ D  G I +   + L    
Sbjct: 459 ----------------KVGDIVKGTVKDIKEFGVFVALDENVD--GLIRNEDLYPLKKEE 500

Query: 780 VESGSVIQAAI 790
           ++SG  I+A I
Sbjct: 501 IQSGDEIEAVI 511



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 11/174 (6%)

Query: 1236 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1295
            +E+ +D    +I++G +K   ++G +I+ + +   +  L N    +   PE    IG+ +
Sbjct: 110  IEQHKDDFDGLILEGVIKG-KNRGGYIVENDE-GVQFFLPNSQSFFKNKPE----IGRKI 163

Query: 1296 AGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
              +V+ ++P +  + ++ K    D     +  +N L  L+ G IV G IK++ +YG+F+ 
Sbjct: 164  TAKVIKIDPENDSIVISRKAYLQDIFKKREEIVNQL--LNEGTIVEGTIKKITNYGMFVE 221

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +    + GL H +E+S     N    ++ G+KV VK +  +KEKRR+ L +K++
Sbjct: 222  VA-PQVEGLVHYNEISYKGPVNPAKYFQEGDKVNVKAIDFNKEKRRLLLSIKAT 274



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/402 (20%), Positives = 175/402 (43%), Gaps = 30/402 (7%)

Query: 218 FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIY 277
           F L N+   + +KN     +K+ A+++ +DP + ++ ++   YL         + V  + 
Sbjct: 144 FFLPNS--QSFFKNKPEIGRKITAKVIKIDPENDSIVISRKAYLQDIFKKREEI-VNQLL 200

Query: 278 DQSKVV----RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 333
           ++  +V    +     G+ +++          V  ++++ +      K ++EG  V V+ 
Sbjct: 201 NEGTIVEGTIKKITNYGMFVEVAP---QVEGLVHYNEISYKGPVNPAKYFQEGDKVNVKA 257

Query: 334 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 393
           + F   +      +KA+  +       +++PG V+   +  ++ +GA V     ++ L  
Sbjct: 258 IDFNKEKRRLLLSIKATQPDPWEEIKGELEPGDVINVTISNIEPYGAFVDLGNDIEGLLH 317

Query: 394 LPHMSEFEIVKPGKKF-KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEAT 450
           +  MS  +  K  K++ + G +L   V+ +  +++++ V+ K  L K     LS+Y E  
Sbjct: 318 ISEMSWDKRPKHPKEYVQEGQQLDVEVIEIDAENRKLRVSLKNLLPKPFEEFLSNYKEGD 377

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
              +  G +T +   G FVR    V+G     ++  + G +    ++VG+ V+ +I    
Sbjct: 378 ---VVEGEVTSLTDFGAFVRI-GSVEGLLHNQDISWEKGQKAKDAFNVGEKVEVKIAKID 433

Query: 511 PASRRINL---SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
             + +I+L   S +  P      +  K+G +V G V  +      V+V       G I  
Sbjct: 434 RDNEKISLDRKSLLESPLEKFAKEH-KVGDIVKGTVKDIKEFG--VFVALDENVDGLIRN 490

Query: 568 EHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAK 608
           E L        + K  I+ G E + ++  LD +++ L LS +
Sbjct: 491 EDL------YPLKKEEIQSGDEIEAVISHLDTKNNRLRLSVR 526



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 199/456 (43%), Gaps = 76/456 (16%)

Query: 978  KIGQTVTARIIAKSNKPDM----KKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1033
            +IG+ +TA++I    + D     +K++L ++  K       EI ++LL E      G  V
Sbjct: 158  EIGRKITAKVIKIDPENDSIVISRKAYLQDIFKKRE-----EIVNQLLNE------GTIV 206

Query: 1034 TGYVYKVDNEWALLTISRHLKAQLFILDSAYE-PSELQEFQRRFHIGKAVTGHVLSINKE 1092
             G + K+ N    + ++  ++  +   + +Y+ P    ++   F  G  V    +  NKE
Sbjct: 207  EGTIKKITNYGMFVEVAPQVEGLVHYNEISYKGPVNPAKY---FQEGDKVNVKAIDFNKE 263

Query: 1093 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1152
            K+ L L ++  Q    D   +I  +     +  GD++   IS I     G  V +G  + 
Sbjct: 264  KRRLLLSIKATQ---PDPWEEIKGE-----LEPGDVINVTISNIEPY--GAFVDLGNDIE 313

Query: 1153 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1212
            G +H +E+           +D+    P     EGQ +  +V+EI    R        LR 
Sbjct: 314  GLLHISEM----------SWDKRPKHPKEYVQEGQQLDVEVIEIDAENR-------KLRV 356

Query: 1213 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1272
            SL  +              P    E + +     +V+G V ++T  G F+ +      + 
Sbjct: 357  SLKNL-------------LPKPFEEFLSNYKEGDVVEGEVTSLTDFGAFVRIGS---VEG 400

Query: 1273 LLSNLSDGYV--ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1330
            LL N    +   +  +  F +G+ V  ++  ++  ++++ +     D ++  +S +   +
Sbjct: 401  LLHNQDISWEKGQKAKDAFNVGEKVEVKIAKIDRDNEKISL-----DRKSLLESPLEKFA 455

Query: 1331 NLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1389
              H VGDIV G +K ++ +G+F+ + + N+ GL    +L     + I++    G++++  
Sbjct: 456  KEHKVGDIVKGTVKDIKEFGVFVAL-DENVDGLIRNEDLYPLKKEEIQS----GDEIEAV 510

Query: 1390 ILKVDKEKRRISLGMKS-SYFKNDADNLQMSSEEES 1424
            I  +D +  R+ L ++     K   D  +++S+E++
Sbjct: 511  ISHLDTKNNRLRLSVRRLQKMKEKEDLKKINSDEKT 546


>gi|304406967|ref|ZP_07388621.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304343954|gb|EFM09794.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 407

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 169/378 (44%), Gaps = 48/378 (12%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            G  V G + K+++  A  T+S   K    I        +L        +G+ V   V+SI
Sbjct: 30   GDTVKGTIVKIEDNQA--TVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVSI 87

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
            + EK+ L L  R      + + +    DN + F    D+V   + K     GGLV  +G 
Sbjct: 88   DDEKEKLVLSKRAIDGEKAWEELQAKFDNSEAF----DVVIADVVK-----GGLVADVG- 137

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
             + G +  + ++   V D             S Y +G+ +K KV EI R       V LS
Sbjct: 138  -VRGFIPASMVERHFVED------------FSDY-KGRSIKVKVKEIDRE---NNKVILS 180

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
             +  L+     N   +             I  L P   ++G V+ +T  G FI +   +D
Sbjct: 181  AKEVLEADFEANKQKI-------------IASLEPGQELEGTVQRLTPFGAFIDIG-GID 226

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1329
              V +S +S  +V  P+     G+ V  +VL V+P + ++ +++K +       +    +
Sbjct: 227  GLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKVDPAAGKISLSMKAAQPGPWDSA----I 282

Query: 1330 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1389
            ++ + GDIV G ++R+  +G FI I    + GL H+S+++  HV     + + G++VK K
Sbjct: 283  NSFNTGDIVTGTVRRIVDFGAFIEI-APGVEGLVHISQIAHRHVATPHEVLKEGQEVKAK 341

Query: 1390 ILKVDKEKRRISLGMKSS 1407
            IL  +  ++R+SL +K +
Sbjct: 342  ILDFNPAQKRVSLSIKET 359



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           + ++PG  ++G V  +  FGA +   GG+  L  +  +S   +  P      G  +  +V
Sbjct: 198 ASLEPGQELEGTVQRLTPFGAFIDI-GGIDGLVHVSEISWQHVAHPKDAVSEGQSVRVKV 256

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   + +I+++ K        + ++S+   T  ++T G + +I   G F+    GV+G
Sbjct: 257 LKVDPAAGKISLSMKAAQPGPWDSAINSFN--TGDIVT-GTVRRIVDFGAFIEIAPGVEG 313

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               S++       P  +   GQ VK +I+   PA +R++LS 
Sbjct: 314 LVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLSI 356



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 141/364 (38%), Gaps = 56/364 (15%)

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
           G I KIE +   V       G  P  EL        ++   VGQ V+ +++S      ++
Sbjct: 35  GTIVKIEDNQATVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVSIDDEKEKL 94

Query: 517 NLS-FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL- 574
            LS   +   +  E+   K  +  S   DVV  + V   ++A    +G IP   +  H  
Sbjct: 95  VLSKRAIDGEKAWEELQAKFDN--SEAFDVVIADVVKGGLVADVGVRGFIPASMVERHFV 152

Query: 575 -EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL-----INSAQQLPSDASHIHPN 628
            + +      IK      ++  +D E++ ++LSAK  L      N  + + S    + P 
Sbjct: 153 EDFSDYKGRSIKV-----KVKEIDRENNKVILSAKEVLEADFEANKQKIIAS----LEPG 203

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
             + G V  +   G F+  +G + G    S+      A        GQSVR  +L V+  
Sbjct: 204 QELEGTVQRLTPFGAFID-IGGIDGLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKVDPA 262

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
            G+I+LS+K +     D++                           +  F  G ++ G V
Sbjct: 263 AGKISLSMKAAQPGPWDSA---------------------------INSFNTGDIVTGTV 295

Query: 749 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 801
               DFG  +  E    V G +   Q+A   V +       G  ++A ILD   A++ V 
Sbjct: 296 RRIVDFGAFI--EIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVS 353

Query: 802 LSLK 805
           LS+K
Sbjct: 354 LSIK 357



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 143/362 (39%), Gaps = 53/362 (14%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K G  VKG ++ ++   A V        + PL  +S  ++       +VG E+  +V+ 
Sbjct: 27  LKKGDTVKGTIVKIEDNQATVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVS 86

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYA-----------EATDRLITHGWITKIEKHGCFVR 470
           +  +      K+ LV SK AI    A           EA D +I       + K G    
Sbjct: 87  IDDE------KEKLVLSKRAIDGEKAWEELQAKFDNSEAFDVVIAD-----VVKGGLVAD 135

Query: 471 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
              GV+GF P S +      E  S Y  G+ +K ++        R N   ++    V E 
Sbjct: 136 V--GVRGFIPASMVERH-FVEDFSDYK-GRSIKVKVKEI----DRENNKVILSAKEVLEA 187

Query: 531 DL----------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 580
           D           ++ G  + G V  +TP    + +   G   G +    ++   +H    
Sbjct: 188 DFEANKQKIIASLEPGQELEGTVQRLTPFGAFIDI---GGIDGLVHVSEIS--WQHVAHP 242

Query: 581 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCN 637
           K  +  G     ++L +D  +  + LS K     +AQ  P D++    +   +V G V  
Sbjct: 243 KDAVSEGQSVRVKVLKVDPAAGKISLSMK-----AAQPGPWDSAINSFNTGDIVTGTVRR 297

Query: 638 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
           I++ G F+     + G    S+      A   +    GQ V++ ILD N    R++LS+K
Sbjct: 298 IVDFGAFIEIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLSIK 357

Query: 698 QS 699
           ++
Sbjct: 358 ET 359



 Score = 45.1 bits (105), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 32/176 (18%)

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
            G  + IG  + G VH +E+    V+ P         D +S   EGQ V+ KVL++     
Sbjct: 217  GAFIDIG-GIDGLVHVSEISWQHVAHPK--------DAVS---EGQSVRVKVLKVDPAAG 264

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
                + LS++++                  PG     I   +   IV G V+ +   G F
Sbjct: 265  ---KISLSMKAA-----------------QPGPWDSAINSFNTGDIVTGTVRRIVDFGAF 304

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
            I ++  ++  V +S ++  +V +P +    G+ V  ++L   P  KRV +++K ++
Sbjct: 305  IEIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLSIKETE 360


>gi|297584436|ref|YP_003700216.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens
            MLS10]
 gi|297142893|gb|ADH99650.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10]
          Length = 388

 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 183/382 (47%), Gaps = 54/382 (14%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
            +S+G    G V KV+++ A + +        + +D     SEL       H+ KA  G V
Sbjct: 15   LSVGDVTKGTVSKVEDKQAYVNVG-------YKMDGVVPISELA----SLHVEKA--GDV 61

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTV--DISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1144
            ++  +E +   + L   +  +S + V  + + +NM   +  G++    ++ ++ G  GLV
Sbjct: 62   INEGEEYEFKVIKLTEDELVLSRRAVAAEKTWENMAEKLESGEVFEAEVADVVKG--GLV 119

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V +G  + G +  + ++   V D             S Y +G+ ++ KV+E+ R      
Sbjct: 120  VDVG--VRGFIPASLVERFYVED------------FSEY-KGKTLRLKVVELDRERNKLI 164

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
               LS R+ LD              +   +  E +  +S   +V G V+ +TS G F+ +
Sbjct: 165  ---LSQRAVLDE-------------EALNQKKETLHSISAGEVVSGTVQRITSFGVFVDI 208

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S LS  ++E+P +    G  V  +VLSV+P ++R+ +++K +        
Sbjct: 209  G-GVDGLVHISQLSHEHIETPSEVVSEGDEVKVKVLSVDPDNERISLSIKETMPGPWEGV 267

Query: 1325 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
            E        VGD+V G++KR+ S+G F+ +    + GL H+S+++  H+     + + GE
Sbjct: 268  E----EQFSVGDVVTGKVKRLVSFGAFVEVAK-GVEGLVHISQIANRHIGTPGEVLKEGE 322

Query: 1385 KVKVKILKVDKEKRRISLGMKS 1406
            +V  KIL ++ + +RISL +++
Sbjct: 323  EVSAKILDINLDDKRISLSIRA 344



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            L ++  G++V G ++R+ S+G+F+ I   +  GL H+S+LS +H++    +   G++VKV
Sbjct: 183  LHSISAGEVVSGTVQRITSFGVFVDIGGVD--GLVHISQLSHEHIETPSEVVSEGDEVKV 240

Query: 1389 KILKVDKEKRRISLGMKSS 1407
            K+L VD +  RISL +K +
Sbjct: 241  KVLSVDPDNERISLSIKET 259



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 7/164 (4%)

Query: 359 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           HS +  G VV G V  + SFG  V   GGV  L  +  +S   I  P +    G E+  +
Sbjct: 184 HS-ISAGEVVSGTVQRITSFGVFVDI-GGVDGLVHISQLSHEHIETPSEVVSEGDEVKVK 241

Query: 419 VLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
           VL V   ++RI+++ K+T+      +   ++      +  G + ++   G FV    GV+
Sbjct: 242 VLSVDPDNERISLSIKETMPGPWEGVEEQFSVGD---VVTGKVKRLVSFGAFVEVAKGVE 298

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           G    S++       P  +   G+ V  +I+      +RI+LS 
Sbjct: 299 GLVHISQIANRHIGTPGEVLKEGEEVSAKILDINLDDKRISLSI 342



 Score = 49.3 bits (116), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 134/294 (45%), Gaps = 57/294 (19%)

Query: 1066 PSELQEFQRRFHI-------GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
            P+ L E   RF++       GK +   V+ +++E+  L L  R   D   ++ ++   + 
Sbjct: 129  PASLVE---RFYVEDFSEYKGKTLRLKVVELDRERNKLILSQRAVLD---EEALNQKKET 182

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
            + + I  G++V G + +I S   G+ V IG  + G VH ++L +  +  P     EG   
Sbjct: 183  LHS-ISAGEVVSGTVQRITSF--GVFVDIGG-VDGLVHISQLSHEHIETPSEVVSEG--- 235

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
                 DE   VK KVL +         + LS++ ++ G               P + +E 
Sbjct: 236  -----DE---VKVKVLSVDPD---NERISLSIKETMPG---------------PWEGVE- 268

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
             E  S   +V G VK + S G F+ +++ ++  V +S +++ ++ +P +    G+ V+ +
Sbjct: 269  -EQFSVGDVVTGKVKRLVSFGAFVEVAKGVEGLVHISQIANRHIGTPGEVLKEGEEVSAK 327

Query: 1299 VLSVEPLSKRVEVTLKTSDSRT------ASQSEI---NNLSNLHVGDIVIGQIK 1343
            +L +    KR+ ++++  +  T      A + E       S  ++GD++  Q+K
Sbjct: 328  ILDINLDDKRISLSIRALEEETQEKEASAQKQEFAKDEEQSGFNLGDVIGDQLK 381



 Score = 47.4 bits (111), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 158/393 (40%), Gaps = 59/393 (15%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 509
           +T G ++K+E    +V     + G  P SEL      +   + + G+  + +++      
Sbjct: 20  VTKGTVSKVEDKQAYVNVGYKMDGVVPISELASLHVEKAGDVINEGEEYEFKVIKLTEDE 79

Query: 510 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE- 568
           +  SRR   +   + T  +  + ++ G +    V  V    +VV V  +G+   ++    
Sbjct: 80  LVLSRR---AVAAEKTWENMAEKLESGEVFEAEVADVVKGGLVVDVGVRGFIPASLVERF 136

Query: 569 HLADHLEH--ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-I 625
           ++ D  E+   T+   V++          LD E + L+LS +  L   A     +  H I
Sbjct: 137 YVEDFSEYKGKTLRLKVVE----------LDRERNKLILSQRAVLDEEALNQKKETLHSI 186

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
               VV G V  I   G FV  +G + G    S+         S+    G  V+  +L V
Sbjct: 187 SAGEVVSGTVQRITSFGVFVD-IGGVDGLVHISQLSHEHIETPSEVVSEGDEVKVKVLSV 245

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
           + +  RI+LS+K++     +         +EE+                   F +G V+ 
Sbjct: 246 DPDNERISLSIKETMPGPWEG--------VEEQ-------------------FSVGDVVT 278

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAER 798
           GKV     FG  V  E    V G +   Q+A       G  ++ G  + A ILD+   ++
Sbjct: 279 GKVKRLVSFGAFV--EVAKGVEGLVHISQIANRHIGTPGEVLKEGEEVSAKILDINLDDK 336

Query: 799 LVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 831
            + LS++ +  +  +E  ++ Q Q+  +  E S
Sbjct: 337 RISLSIRALE-EETQEKEASAQKQEFAKDEEQS 368



 Score = 40.4 bits (93), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 289 LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGIL 347
            G+ +DI          V IS ++ E +    +   EG  V+V++L      E ++  I 
Sbjct: 202 FGVFVDIGGVD----GLVHISQLSHEHIETPSEVVSEGDEVKVKVLSVDPDNERISLSIK 257

Query: 348 KA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
           +     +EG+         G VV GKV  + SFGA V+   GV+ L  +  ++   I  P
Sbjct: 258 ETMPGPWEGV---EEQFSVGDVVTGKVKRLVSFGAFVEVAKGVEGLVHISQIANRHIGTP 314

Query: 406 GKKFKVGAELVFRVLGVK--SKRITVT 430
           G+  K G E+  ++L +    KRI+++
Sbjct: 315 GEVLKEGEEVSAKILDINLDDKRISLS 341


>gi|309789714|ref|ZP_07684294.1| RNA binding S1 domain protein [Oscillochloris trichoides DG-6]
 gi|308228200|gb|EFO81848.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
          Length = 488

 Score = 90.9 bits (224), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 10/188 (5%)

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
            T V   G    +++DL   M ++G V ++   G F+ L    D  V +S +SD  +++P 
Sbjct: 88   TPVAEEGGRPRRLKDLQAGMELEGRVTSIALYGIFVDLGVGRDGLVHISEMSDTRIDTPS 147

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS---------EINNLSNLHVGDI 1337
                IG  V  RV SV+P ++R+ +T+++ +     ++         + + LS+L VGD+
Sbjct: 148  DLVQIGDTVTVRVKSVDPDARRISLTMRSQERSEGGRNRNRPKRAEVDRDRLSSLKVGDV 207

Query: 1338 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1397
            V G+I     +G F  I      GL HVSEL+E  V+  E   + G++   K+L++D + 
Sbjct: 208  VEGKITGFAPFGAFADI-GVGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKVLEIDPDG 266

Query: 1398 RRISLGMK 1405
             RISL ++
Sbjct: 267  TRISLSLR 274



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 114/262 (43%), Gaps = 34/262 (12%)

Query: 456 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515
            G +T I  +G FV    G  G    SE+       PS +  +G  V  R+ S  P +RR
Sbjct: 110 EGRVTSIALYGIFVDLGVGRDGLVHISEMSDTRIDTPSDLVQIGDTVTVRVKSVDPDARR 169

Query: 516 INLSFMM-----------KPTR--VSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGY 560
           I+L+              +P R  V  D L  +K+G +V G +    P      +   G 
Sbjct: 170 ISLTMRSQERSEGGRNRNRPKRAEVDRDRLSSLKVGDVVEGKITGFAPFGAFADI---GV 226

Query: 561 SK-GTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL 618
            K G I    LA+        +  +K G +F+ ++L +D + + + LS + ++ +   Q 
Sbjct: 227 GKDGLIHVSELAEG--RVEKPEDAVKVGDQFNFKVLEIDPDGTRISLSLRRAMRSQRMQ- 283

Query: 619 PSDASHIHPNSVVHGYVCNIIETGCFVRF-LGR--LTGFAPRSKAVDGQRADLSKTYYVG 675
                 + P  ++ G V  +   G FV   +GR  L   +  S +  G+  D+ K   VG
Sbjct: 284 -----GLEPGQILEGTVSGLAPFGAFVDIGVGRDGLVHISALSSSRVGKVEDVVK---VG 335

Query: 676 QSVRSNILDVNSETGRITLSLK 697
             V   +L+V+ ++ RI+L+++
Sbjct: 336 DKVTVKVLEVDQQSKRISLTMR 357



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 108/262 (41%), Gaps = 49/262 (18%)

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ--DGISD----KTVDISNDNM 1119
            PS+L        IG  VT  V S++ + + + L +R  +  +G  +    K  ++  D +
Sbjct: 146  PSDL------VQIGDTVTVRVKSVDPDARRISLTMRSQERSEGGRNRNRPKRAEVDRDRL 199

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
             + +  GD+V G+I+       G    IG    G +H +EL    V  P      G    
Sbjct: 200  SS-LKVGDVVEGKITGFAPF--GAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGD--- 253

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                   QF   KVLEI     GT  + LSLR ++                      +++
Sbjct: 254  -------QF-NFKVLEIDPD--GT-RISLSLRRAM--------------------RSQRM 282

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            + L P  I++G V  +   G F+ +    D  V +S LS   V   E    +G  V  +V
Sbjct: 283  QGLEPGQILEGTVSGLAPFGAFVDIGVGRDGLVHISALSSSRVGKVEDVVKVGDKVTVKV 342

Query: 1300 LSVEPLSKRVEVTLKTSDSRTA 1321
            L V+  SKR+ +T++  DS  A
Sbjct: 343  LEVDQQSKRISLTMRLDDSEPA 364



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 113/272 (41%), Gaps = 41/272 (15%)

Query: 185 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ-HKKVNARI 243
           L  GM +  RV SI   G+ +       G V I  + +T    +  +D  Q    V  R+
Sbjct: 103 LQAGMELEGRVTSIALYGIFVDLGVGRDGLVHISEMSDT--RIDTPSDLVQIGDTVTVRV 160

Query: 244 LFVDPTSRAVGLTLNPYLL----HNRAPP----------SHVKVGDIYDQSKVVRVDRGL 289
             VDP +R + LT+          NR  P          S +KVGD+  + K+       
Sbjct: 161 KSVDPDARRISLTMRSQERSEGGRNRNRPKRAEVDRDRLSSLKVGDVV-EGKITGF-APF 218

Query: 290 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI--- 346
           G   DI    V     + +S++AE  V K E   K G     ++L    ++   T I   
Sbjct: 219 GAFADIG---VGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKVL---EIDPDGTRISLS 272

Query: 347 ----LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 402
               +++   +GL       +PG +++G V  +  FGA V    G   L  +  +S   +
Sbjct: 273 LRRAMRSQRMQGL-------EPGQILEGTVSGLAPFGAFVDIGVGRDGLVHISALSSSRV 325

Query: 403 VKPGKKFKVGAELVFRVLGV--KSKRITVTHK 432
            K     KVG ++  +VL V  +SKRI++T +
Sbjct: 326 GKVEDVVKVGDKVTVKVLEVDQQSKRISLTMR 357



 Score = 47.4 bits (111), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+GK+     FGA      G   L  +  ++E  + KP    KVG +  F+V
Sbjct: 200 SSLKVGDVVEGKITGFAPFGAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKV 259

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L +     RI+++ ++ +   ++  L          I  G ++ +   G FV    G  G
Sbjct: 260 LEIDPDGTRISLSLRRAMRSQRMQGLEPGQ------ILEGTVSGLAPFGAFVDIGVGRDG 313

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
               S L      +   +  VG  V  +++     S+RI+L+  +
Sbjct: 314 LVHISALSSSRVGKVEDVVKVGDKVTVKVLEVDQQSKRISLTMRL 358



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 27/214 (12%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           D++ GM ++G+V ++  +G  V    G   L  +  MS+  I  P    ++G  +  RV 
Sbjct: 102 DLQAGMELEGRVTSIALYGIFVDLGVGRDGLVHISEMSDTRIDTPSDLVQIGDTVTVRVK 161

Query: 421 GV--KSKRITVTHK--------KTLVKSKLAILSSYAEATDRL-------ITHGWITKIE 463
            V   ++RI++T +        +   + K A +       DRL       +  G IT   
Sbjct: 162 SVDPDARRISLTMRSQERSEGGRNRNRPKRAEVDR-----DRLSSLKVGDVVEGKITGFA 216

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--M 521
             G F     G  G    SEL      +P     VG     +++   P   RI+LS    
Sbjct: 217 PFGAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKVLEIDPDGTRISLSLRRA 276

Query: 522 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 555
           M+  R+     ++ G ++ G V  + P    V +
Sbjct: 277 MRSQRMQG---LEPGQILEGTVSGLAPFGAFVDI 307


>gi|406575491|ref|ZP_11051195.1| 30S ribosomal protein S1 [Janibacter hoylei PVAS-1]
 gi|404555203|gb|EKA60701.1| 30S ribosomal protein S1 [Janibacter hoylei PVAS-1]
          Length = 496

 Score = 90.9 bits (224), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 191/417 (45%), Gaps = 66/417 (15%)

Query: 1011 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS+  L    D +I     G  V G++ KVD +  LL I       + ++   +
Sbjct: 13   IAVNDIGSEEDLLAAIDATIKDFNDGDIVEGHIVKVDRDEVLLDIGYKTEGVIPSRELSI 72

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +PSE+        +G +V   VL   KE K  RL+L   +        + +   ++
Sbjct: 73   KHDVDPSEI------VAVGDSVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 119

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 120  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 170

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+   S   +               ++
Sbjct: 171  --------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF-------------LK 206

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            +L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 207  ELQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGDEVTVEVL 265

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ +E+  +
Sbjct: 266  DVDMDRERVSLSLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVRVED-GI 319

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
             GL H+SEL+E HV+  E +   G+++ VK++ +D E+RRISL +K +    D  NL
Sbjct: 320  EGLVHISELAERHVELPEQVVNVGQEIFVKVIDIDLERRRISLSLKQA--NEDGANL 374



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 153/355 (43%), Gaps = 31/355 (8%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           T  D   G +V+G ++ VD    ++      + + P   +S    V P +   VG  +  
Sbjct: 31  TIKDFNDGDIVEGHIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEIVAVGDSVEA 90

Query: 418 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
            VL  + K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G+
Sbjct: 91  LVLQKEDKEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GL 146

Query: 476 QGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRV 527
           +GF P S  E+      +P    +VG+ ++ +I+      +++  SRR  L       R 
Sbjct: 147 RGFLPASLVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 202

Query: 528 SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 586
           +    ++ G + SGVV  +      V +   G   G +    L+  H++H +    V++ 
Sbjct: 203 TFLKELQKGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEV 256

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCF 644
           G E   ++L +D +   + LS K +  +  Q      +  H    VV G V  ++  G F
Sbjct: 257 GDEVTVEVLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAF 312

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           VR    + G    S+  +       +   VGQ +   ++D++ E  RI+LSLKQ+
Sbjct: 313 VRVEDGIEGLVHISELAERHVELPEQVVNVGQEIFVKVIDIDLERRRISLSLKQA 367



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 137/309 (44%), Gaps = 54/309 (17%)

Query: 1031 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1081
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 112  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 170

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1138
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 171  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELQKGQVRSGVVSSIVN 223

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
               G  V +G  + G VH +EL    +  P    + G        DE   V  +VL++  
Sbjct: 224  F--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG--------DE---VTVEVLDVDM 269

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LSL+++ +                P +H  +   +    +V G V  +   
Sbjct: 270  DRE---RVSLSLKATQE---------------DPWQHFARTHAI--GQVVPGKVTKLVPF 309

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   ++  V +S L++ +VE PE+   +G+ +  +V+ ++   +R+ ++LK ++ 
Sbjct: 310  GAFVRVEDGIEGLVHISELAERHVELPEQVVNVGQEIFVKVIDIDLERRRISLSLKQANE 369

Query: 1319 RTASQSEIN 1327
              A+ +E +
Sbjct: 370  DGANLTEFD 378


>gi|386773662|ref|ZP_10096040.1| 30S ribosomal protein S1 [Brachybacterium paraconglomeratum LC44]
          Length = 494

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 190/409 (46%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIG-SKLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IG +  L    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    IAINDIGDADELMAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P++         +G  +   VL   KE K  RL+L   +        + +  +++
Sbjct: 69   KHDVDPAD------EVEVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGSIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                +  +V GR+ +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 116  QIKEDEGVVTGRVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   SD              ++
Sbjct: 165  ------QEIEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSDF-------------LQ 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 203  TLQKGQVREGAVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVKVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
             V+   +RV ++LK      A+Q +   L +  H +G++V G++ ++  +G F+ +E+  
Sbjct: 262  DVDMDRERVSLSLK------ATQEDPWQLFARTHAIGEVVPGKVTKLVPFGAFVRVED-G 314

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL++ HVD  E +    + V VK++ +D E+RRISL +K +
Sbjct: 315  IEGLVHISELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQA 363



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 162/392 (41%), Gaps = 44/392 (11%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P  + +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPADEVEVGDEIEALVLQKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGSIEQIKE--DEGVVTGRVIEVVKGGLIVDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFLQTLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  G V  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 206 KGQVREGAVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVKVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 260 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHAIGEVVPGKVTKLVPFGAFVRVEDGI 315

Query: 652 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSC----CSSTDA 706
            G    S+    +  DL  +   V Q V   ++D++ E  RI+LSLKQ+         D 
Sbjct: 316 EGLVHISELAQ-RHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQANEGVDPEGDDT 374

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 738
           +F    +       M      NG E K+ EGF
Sbjct: 375 TFDPALY------GMAAEYDANG-EYKYPEGF 399



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 2/159 (1%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   VL 
Sbjct: 204 LQKGQVREGAVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLD 262

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           V   R  V+      +     L +   A   ++  G +TK+   G FVR  +G++G    
Sbjct: 263 VDMDRERVSLSLKATQEDPWQLFARTHAIGEVVP-GKVTKLVPFGAFVRVEDGIEGLVHI 321

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           SEL       P  +  V Q V  +++      RRI+LS 
Sbjct: 322 SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSL 360



 Score = 47.4 bits (111), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 146/380 (38%), Gaps = 56/380 (14%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI ++     D  I  G + K++     +      +G  P  EL +    +P+    VG 
Sbjct: 23  AIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPADEVEVGD 82

Query: 501 VVKCRIMSSIPASRRINLSFMMKP--------TRVSEDDLVKLGSLVSGVVDVVTPNAVV 552
            ++  ++       R+ LS              ++ ED+      +V+G V  V    ++
Sbjct: 83  EIEALVLQKEDKEGRLILSKKRAQYERAWGSIEQIKEDE-----GVVTGRVIEVVKGGLI 137

Query: 553 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 611
           V +  +G+   ++        +E   V       G E + +++ LD   +N++LS +  L
Sbjct: 138 VDIGLRGFLPASL--------VEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAYL 189

Query: 612 INSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 670
             +   + SD    +    V  G V +I+  G FV  LG + G    S+         S+
Sbjct: 190 EETQSAVRSDFLQTLQKGQVREGAVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSE 248

Query: 671 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 730
              VGQ V+  +LDV+ +  R++LSLK +                +E    L +  H   
Sbjct: 249 VVEVGQKVKVEVLDVDMDRERVSLSLKAT----------------QEDPWQLFARTH--- 289

Query: 731 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSV 785
                    IG V+ GKV +   FG  V  E+  +    I+     H  L    V     
Sbjct: 290 --------AIGEVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVTVDQD 341

Query: 786 IQAAILDVAKAERLVDLSLK 805
           +   ++D+    R + LSLK
Sbjct: 342 VFVKVIDIDLERRRISLSLK 361



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 60/294 (20%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
           G +V G V  V  + V++ +   GY ++G IP+  L+  ++H       ++ G E + L+
Sbjct: 34  GDIVEGTVVKVDHDEVLLDI---GYKTEGVIPSRELS--IKHDVDPADEVEVGDEIEALV 88

Query: 595 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
           +  +++   L+LS K +    A    +Q+  D        VV G V  +++ G  V    
Sbjct: 89  LQKEDKEGRLILSKKRAQYERAWGSIEQIKED------EGVVTGRVIEVVKGGLIVDI-- 140

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDA 706
            L GF P S     +  DL    YVGQ + + I++++     + LS +   +   S+  +
Sbjct: 141 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRS 198

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
            F+Q           LQ                 G V EG V    +FG  V       V
Sbjct: 199 DFLQ----------TLQK----------------GQVREGAVSSIVNFGAFVDL---GGV 229

Query: 767 YGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
            G +   +L+          VE G  ++  +LDV      V LSLK    D ++
Sbjct: 230 DGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLDVDMDRERVSLSLKATQEDPWQ 283


>gi|451944076|ref|YP_007464712.1| 30S ribosomal protein S1 [Corynebacterium halotolerans YIM 70093 =
            DSM 44683]
 gi|451903463|gb|AGF72350.1| 30S ribosomal protein S1 [Corynebacterium halotolerans YIM 70093 =
            DSM 44683]
          Length = 486

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 184/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEEFLAAVDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +  N++
Sbjct: 69   KHDVDPDEVVE------VGDEIDALVLT--KEDKEGRLILSKKR-----AQYERAWGNIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                  + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  QLQANDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKHRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL++ HVD  + I   GE V VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVDVPDQIVTVGEDVMVKVIDIDLERRRISLSLKQA 363



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVDVPDQIVTVGEDVMVKVIDIDLERRRISLSL 360



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP-- 480
           K  R+ ++ K+   +     +    +A D  +T G + ++ K G  +    G++GF P  
Sbjct: 94  KEGRLILSKKRAQYERAWGNIEQL-QANDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 481 ----RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
               R    LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVDVPDQIVTVGEDVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EG+
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPEANEWLEGY 405


>gi|385653141|ref|ZP_10047694.1| 30S ribosomal protein S1 [Leucobacter chromiiresistens JG 31]
          Length = 481

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 177/385 (45%), Gaps = 62/385 (16%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  + G V K+D +  LL +       + ++   +    +P E+ E      +G +V   
Sbjct: 36   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPGEVVE------VGDSVEAL 89

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1144
            VL   KE K  RL+L   +        D+        I E + +V G + +++ G  GL+
Sbjct: 90   VL--QKEDKEGRLILSKKRAQYERAWGDVEK------IKENEGVVTGTVIEVVKG--GLI 139

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V IG   +      EL+ +    P  G               Q ++ K+LE+ +      
Sbjct: 140  VDIGLRGFLPASLIELRRVRDLTPYLG---------------QEIEAKILELDKNRN--- 181

Query: 1205 HVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
            +V LS R+ L+   S+T SS L+              +L P  + +G + ++ + G F+ 
Sbjct: 182  NVVLSRRALLEETQSATRSSFLA--------------ELKPGQVRKGVISSIVNFGAFVD 227

Query: 1264 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1323
            L   +D  V +S LS  ++E       +G+ V   VLSVE   +RV ++LK +      +
Sbjct: 228  LG-GVDGLVHVSELSWKHIEHASDVVEVGQEVTVEVLSVELDRERVSLSLKAT-----QE 281

Query: 1324 SEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1382
                  +  H +G I  G + ++  +G F+ + +  + GL H+SELS  HV+  E + +A
Sbjct: 282  DPWQVFARTHAIGQIAPGVVTKLVPFGAFVRVAD-GIEGLVHISELSGQHVELAEQVVQA 340

Query: 1383 GEKVKVKILKVDKEKRRISLGMKSS 1407
            G++V VKI+ +D E+RRISL +K +
Sbjct: 341  GQEVFVKIIDIDLERRRISLSLKQA 365



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           +++KPG V KG + ++ +FGA V   GGV  L  +  +S   I       +VG E+   V
Sbjct: 204 AELKPGQVRKGVISSIVNFGAFVDL-GGVDGLVHVSELSWKHIEHASDVVEVGQEVTVEV 262

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V+   +R++++ K T          ++A      I  G +TK+   G FVR  +G++G
Sbjct: 263 LSVELDRERVSLSLKATQEDPWQVFARTHAIGQ---IAPGVVTKLVPFGAFVRVADGIEG 319

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL          +   GQ V  +I+      RRI+LS 
Sbjct: 320 LVHISELSGQHVELAEQVVQAGQEVFVKIIDIDLERRRISLSL 362



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 153/352 (43%), Gaps = 39/352 (11%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +++G V+ +D    ++      + + P   +S    V PG+  +VG  +   VL  + 
Sbjct: 36  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPGEVVEVGDSVEALVLQKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  +  +  G + ++ K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDVEKIKE--NEGVVTGTVIEVVKGGLIVDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             EL       P    ++GQ ++ +I+      +++  SRR  L      TR S    +K
Sbjct: 152 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEETQSATRSSFLAELK 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GV+  +      V +   G   G +    L+  H+EHA+    V++ G E    
Sbjct: 208 PGQVRKGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---DVVEVGQEVTVE 261

Query: 594 LV---LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFL 648
           ++   LD E  +L L A        Q+ P    +  H    +  G V  ++  G FVR  
Sbjct: 262 VLSVELDRERVSLSLKA-------TQEDPWQVFARTHAIGQIAPGVVTKLVPFGAFVRVA 314

Query: 649 GRLTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 699
             + G    S+ + GQ  +L+ +    GQ V   I+D++ E  RI+LSLKQ+
Sbjct: 315 DGIEGLVHISE-LSGQHVELAEQVVQAGQEVFVKIIDIDLERRRISLSLKQA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 150/371 (40%), Gaps = 38/371 (10%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI++    +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVESTLKFFNDGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPGEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG---SLVSGVVDVVTPNAVVVYVIA 557
            V+  ++       R+ LS        +  D+ K+     +V+G V  V    ++V +  
Sbjct: 85  SVEALVLQKEDKEGRLILSKKRAQYERAWGDVEKIKENEGVVTGTVIEVVKGGLIVDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+    +P    A  +E   V       G E + ++L LD   +N++LS + +L+   Q
Sbjct: 145 RGF----LP----ASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLS-RRALLEETQ 195

Query: 617 QLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 674
                +  + + P  V  G + +I+  G FV  LG + G    S+         S    V
Sbjct: 196 SATRSSFLAELKPGQVRKGVISSIVNFGAFVD-LGGVDGLVHVSELSWKHIEHASDVVEV 254

Query: 675 GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 734
           GQ V   +L V  +  R++LSLK +        F + H + +    ++      G+ ++ 
Sbjct: 255 GQEVTVEVLSVELDRERVSLSLKATQEDPWQV-FARTHAIGQIAPGVVTKLVPFGAFVRV 313

Query: 735 VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 794
            +G      IEG VH S   G                H +LA   V++G  +   I+D+ 
Sbjct: 314 ADG------IEGLVHISELSG---------------QHVELAEQVVQAGQEVFVKIIDID 352

Query: 795 KAERLVDLSLK 805
              R + LSLK
Sbjct: 353 LERRRISLSLK 363


>gi|295395316|ref|ZP_06805520.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971867|gb|EFG47738.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030]
          Length = 488

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 189/423 (44%), Gaps = 68/423 (16%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLF 1058
            + K S + V++IGS   F    D +I     G  V G + KVD +  L+ I    K +  
Sbjct: 8    TAKNSQVAVNDIGSADEFLAAVDETIKYFNDGDIVEGTIVKVDRDEVLVDIG--YKTEGV 65

Query: 1059 ILDSAY------EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1112
            IL          +P+E+ E      +G  +   VL+  KE K  RL+L   +        
Sbjct: 66   ILSRELSIKHDVDPAEVVE------VGDPIEALVLT--KEDKDGRLMLSKKRAQYERAWG 117

Query: 1113 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            DI     +   +EG +V G + +++ G  GL+V IG   +      E++ +    P  G 
Sbjct: 118  DIE----KVKENEG-VVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLTPYIG- 169

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
                          Q V  K++E+ +      +V LS R+ L+   ST   D        
Sbjct: 170  --------------QKVDAKIIELDKNRN---NVVLSRRAWLEETQSTVRHDF------- 205

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
                  ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 206  ------LQTLQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVTVG 258

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLF 1351
              V   VL V+   +RV ++LK +      +    + +  HV G IV G++ ++  +G F
Sbjct: 259  DEVTVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHVIGQIVPGKVTKLVPFGAF 313

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1411
            + +E+  + GL H+SEL+  HVD  E +    E V VK++ +D E+RRISL +K +    
Sbjct: 314  VRVED-GIEGLVHISELAVRHVDLPEQVVTVDETVYVKVIDIDLERRRISLSLKQANEGV 372

Query: 1412 DAD 1414
            D D
Sbjct: 373  DPD 375



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPNEVVTVGDEVTVEVLD 267

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G  
Sbjct: 268 VDMDRERVSLSLKATQEDPWQHFARTHVIGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +     P  +  V + V  +++      RRI+LS 
Sbjct: 325 HISELAVRHVDLPEQVVTVDETVYVKVIDIDLERRRISLSL 365



 Score = 47.8 bits (112), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 164/389 (42%), Gaps = 39/389 (10%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    +V      + +     +S    V P +  +VG  +   VL  + 
Sbjct: 39  GDIVEGTIVKVDRDEVLVDIGYKTEGVILSRELSIKHDVDPAEVVEVGDPIEALVLTKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  +  +  G + ++ K G  V    G++GF P S
Sbjct: 99  KDGRLMLSKKRAQYERAWGDIEKVKE--NEGVVTGTVIEVVKGGLIVDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ V  +I+      +++  SRR  L       R      ++
Sbjct: 155 LVEMRRVRDLTP----YIGQKVDAKIIELDKNRNNVVLSRRAWLEETQSTVRHDFLQTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H      V+  G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVTVGDEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  Q      +H+    +V G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQHFAR--THV-IGQIVPGKVTKLVPFGAFVRVEDGIE 321

Query: 653 GFAPRSK-AVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASFM 709
           G    S+ AV  +  DL  +   V ++V   ++D++ E  RI+LSLKQ+      DA   
Sbjct: 322 GLVHISELAV--RHVDLPEQVVTVDETVYVKVIDIDLERRRISLSLKQANEGVDPDA--- 376

Query: 710 QEHFLLEEKIAMLQSSKHNGSELKWVEGF 738
            E FL      M+Q    +G+  K+ EGF
Sbjct: 377 -EEFLDPALYGMVQEYDEDGN-YKYPEGF 403


>gi|354613005|ref|ZP_09030941.1| RNA binding S1 domain protein [Saccharomonospora paurometabolica YIM
            90007]
 gi|353222660|gb|EHB86961.1| RNA binding S1 domain protein [Saccharomonospora paurometabolica YIM
            90007]
          Length = 507

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 193/423 (45%), Gaps = 66/423 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S +   + V++IGS+  F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 12   SEQAKQVAVNDIGSEDDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 71

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G AV   VL   KE K  RL+L   +        + 
Sbjct: 72   SRELSIKHDVDPAEV------VAVGDAVEALVL--QKEDKEGRLILSKKR-----AQYER 118

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++      + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 119  AWGTIEELKERDEPVSGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE- 175

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 176  --------------LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF--------- 209

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L+   + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ 
Sbjct: 210  ----LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE 264

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VLSVE   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 265  VTVEVLSVEMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 319

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY--FKN 1411
            +E   + GL H+SEL+E HV+  E + + G +V VK++ +D E+RRISL +K +   F  
Sbjct: 320  VEE-GIEGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGFTP 378

Query: 1412 DAD 1414
            DA+
Sbjct: 379  DAE 381



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 144/366 (39%), Gaps = 46/366 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 41  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQK 100

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    VSG V  V    +++ +  +G+   ++ 
Sbjct: 101 EDKEGRLILSKKRAQYERAWGTIEELKERDEPVSGTVIEVVKGGLILDIGLRGFLPASL- 159

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 160 -------VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 212

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L 
Sbjct: 213 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLS 271

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V  +  R++LSLK +        F + H                           IG ++
Sbjct: 272 VEMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 304

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V+ G  +   ++D+    R 
Sbjct: 305 PGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRR 364

Query: 800 VDLSLK 805
           + LSLK
Sbjct: 365 ISLSLK 370



 Score = 47.0 bits (110), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 151/358 (42%), Gaps = 32/358 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKED 102

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKERDEPV--SGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L ++ +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLSVEMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 708
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T DA F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGFTPDAEF 382


>gi|311742677|ref|ZP_07716486.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272]
 gi|311314305|gb|EFQ84213.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272]
          Length = 489

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 183/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G + K+D +  LL I       + ++   +
Sbjct: 14   VAVNDIGSAEDFLAAIDKTIKYFNDGDIVDGTIVKIDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  V   VL   KE K  RL+L   +        DI     +
Sbjct: 74   KHDIDPNEV------VALGDTVEALVL--QKEDKEGRLILSKKRAQYERAWGDIEKIKAE 125

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
              + EG ++   + K     GGL++ IG   +      E++ +   DP  G         
Sbjct: 126  DGVVEGTVI--EVVK-----GGLIMDIGLRGFLPASLVEMRRVRDLDPYIG--------- 169

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S    +  T+            
Sbjct: 170  ------QKIEAKIIELDKNRN---NVVLSRRAWLEQTQSAVRQNFLTE------------ 208

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G + ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 209  -LKKGQVRKGVISSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVQVGDEVTVEVL 266

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 267  DVDMDRERVSLSLKAT-----QEDPWQHFARTHQIGQIVPGKVTKLVPFGAFVRVEE-GI 320

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HV+  E + + G+ V VKI+ +D E+RRISL +K +
Sbjct: 321  EGLVHISELAERHVEIPEQVVQIGDSVMVKIIDIDLERRRISLSLKQA 368



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 147/351 (41%), Gaps = 37/351 (10%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ +D    ++      + + P   +S    + P +   +G  +   VL  + 
Sbjct: 39  GDIVDGTIVKIDRDEVLLDIGYKTEGVIPSRELSIKHDIDPNEVVALGDTVEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +A D ++  G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKI-KAEDGVV-EGTVIEVVKGGLIMDI--GLRGFLPAS 154

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R +  
Sbjct: 155 LVEMRRVRDLDP--------YIGQKIEAKIIELDKNRNNVVLSRRAWLEQTQSAVRQNFL 206

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             +K G +  GV+  +      V +   G   G +    L+  H++H      V++ G E
Sbjct: 207 TELKKGQVRKGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVQVGDE 260

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 648
              ++L +D +   + LS K +  +  Q     A       +V G V  ++  G FVR  
Sbjct: 261 VTVEVLDVDMDRERVSLSLKATQEDPWQHF---ARTHQIGQIVPGKVTKLVPFGAFVRVE 317

Query: 649 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
             + G    S+  +       +   +G SV   I+D++ E  RI+LSLKQ+
Sbjct: 318 EGIEGLVHISELAERHVEIPEQVVQIGDSVMVKIIDIDLERRRISLSLKQA 368



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 113/261 (43%), Gaps = 42/261 (16%)

Query: 1066 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1121
            P+ L E +R      +IG+ +   ++ ++K +  + L  R + +    +T      N  T
Sbjct: 152  PASLVEMRRVRDLDPYIGQKIEAKIIELDKNRNNVVLSRRAWLE----QTQSAVRQNFLT 207

Query: 1122 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
             + +G +  G IS I++   G  V +G  + G VH +EL    +  P      G      
Sbjct: 208  ELKKGQVRKGVISSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPNEVVQVG------ 258

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
              DE   V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 259  --DE---VTVEVLDVDMDRE---RVSLSLKATQE---------------DPWQHFARTHQ 295

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   IG  V  +++ 
Sbjct: 296  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQIGDSVMVKIID 353

Query: 1302 VEPLSKRVEVTLKTSDSRTAS 1322
            ++   +R+ ++LK ++   A+
Sbjct: 354  IDLERRRISLSLKQANETEAA 374


>gi|430743377|ref|YP_007202506.1| 30S ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
 gi|430015097|gb|AGA26811.1| ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
          Length = 602

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 176/386 (45%), Gaps = 52/386 (13%)

Query: 1025 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1084
             D+++GQ  TG V  + +  A + +   +   L I D  +E   L+    R  + + +  
Sbjct: 198  ADIAVGQVRTGTVKNLADFGAFVDLG-GIDGLLHITDMGWE--RLKHPGERLRVEEKIEV 254

Query: 1085 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--G 1142
             +L+++KE+  + L L+                N    + E   VG R++  +  V   G
Sbjct: 255  MILNVDKERGKIALGLKQL------------TANPWEQVAEKYAVGARVTGEVVNVMSYG 302

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
              V++   + G VH +E+           +      P      G+ V+  VL I++  R 
Sbjct: 303  AFVKLESGIEGLVHISEMS----------WTRRINHPSEVVQAGEQVEVVVLGINQQKR- 351

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
                E+SL     GM  T +              + +E   P  +V+G V+N+T+ G F+
Sbjct: 352  ----EISL-----GMKQTQADPWD----------QVVEKYPPGTMVEGTVRNLTNYGAFV 392

Query: 1263 MLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
             +   +D  + +S++S    +  P +    G+ V+ +VLSV+   KR+ + LK       
Sbjct: 393  EVEEGIDGLLHVSDMSWTRKIGHPNEVLEKGQTVSCQVLSVDLERKRIALGLK---QLRQ 449

Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1381
               E +       GDIV G+  ++ ++G+F+ +E   L GL H+SEL++  +D+ E +  
Sbjct: 450  DPWETDIPDRYTAGDIVTGKATKLTNFGVFVELE-PGLEGLLHISELADHKIDSPEEVVN 508

Query: 1382 AGEKVKVKILKVDKEKRRISLGMKSS 1407
             G+ ++V++L+VD+ +R+I L  + +
Sbjct: 509  VGDDIEVRVLRVDRGERKIGLSRRKA 534



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 135/285 (47%), Gaps = 40/285 (14%)

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
             EGD+V G++++ +   GGL+V IG              I    P S  D  +   ++ Y
Sbjct: 115  REGDVVTGKVTRKIK--GGLLVDIG--------------INAFLPASQVDIRRPPDIADY 158

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
             + + V+C +L I    R   ++ +S RS ++         L             + D++
Sbjct: 159  LDRE-VRCVILSIDEDRR---NIVVSRRSLIETERVALREQL-------------LADIA 201

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
               +  G VKN+   G F+ L   +D  + ++++    ++ P +   + + +   +L+V+
Sbjct: 202  VGQVRTGTVKNLADFGAFVDLG-GIDGLLHITDMGWERLKHPGERLRVEEKIEVMILNVD 260

Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
                ++ + LK   +    Q          VG  V G++  V SYG F+ +E + + GL 
Sbjct: 261  KERGKIALGLKQLTANPWEQV----AEKYAVGARVTGEVVNVMSYGAFVKLE-SGIEGLV 315

Query: 1364 HVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            H+SE+S    +++   + +AGE+V+V +L ++++KR ISLGMK +
Sbjct: 316  HISEMSWTRRINHPSEVVQAGEQVEVVVLGINQQKREISLGMKQT 360



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 143/333 (42%), Gaps = 21/333 (6%)

Query: 308 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG-LATGI--LKASAFEGLVFTHSDVKP 364
           I+D+  E ++   ++ +    + V IL      G +A G+  L A+ +E +   ++    
Sbjct: 231 ITDMGWERLKHPGERLRVEEKIEVMILNVDKERGKIALGLKQLTANPWEQVAEKYA---V 287

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVK 423
           G  V G+V+ V S+GA V+   G++ L  +  MS    I  P +  + G ++   VLG+ 
Sbjct: 288 GARVTGEVVNVMSYGAFVKLESGIEGLVHISEMSWTRRINHPSEVVQAGEQVEVVVLGIN 347

Query: 424 SKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
            ++  I++  K+T       ++  Y   T   +  G +  +  +G FV    G+ G    
Sbjct: 348 QQKREISLGMKQTQADPWDQVVEKYPPGT---MVEGTVRNLTNYGAFVEVEEGIDGLLHV 404

Query: 482 SELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGS 537
           S++        P+ +   GQ V C+++S     +RI L        P      D    G 
Sbjct: 405 SDMSWTRKIGHPNEVLEKGQTVSCQVLSVDLERKRIALGLKQLRQDPWETDIPDRYTAGD 464

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVL 596
           +V+G    +T     V+V  +   +G +    LADH       + V+  G + + ++L +
Sbjct: 465 IVTGKATKLTNFG--VFVELEPGLEGLLHISELADH--KIDSPEEVVNVGDDIEVRVLRV 520

Query: 597 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 629
           D     + LS + +  + A +   +AS   P +
Sbjct: 521 DRGERKIGLSRRKAQDSPADREEGEASSAPPAA 553



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 137/366 (37%), Gaps = 43/366 (11%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           +D+  G V  G V  +  FGA V   GG+  L  +  M    +  PG++ +V  ++   +
Sbjct: 198 ADIAVGQVRTGTVKNLADFGAFVDL-GGIDGLLHITDMGWERLKHPGERLRVEEKIEVMI 256

Query: 420 LGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V  +R  I +  K+        +   YA         G +  +  +G FV+  +G++G
Sbjct: 257 LNVDKERGKIALGLKQLTANPWEQVAEKYAVGAR---VTGEVVNVMSYGAFVKLESGIEG 313

Query: 478 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--- 533
               SE+        PS +   G+ V+  ++      R I+L   MK T+    D V   
Sbjct: 314 LVHISEMSWTRRINHPSEVVQAGEQVEVVVLGINQQKREISLG--MKQTQADPWDQVVEK 371

Query: 534 -KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 591
              G++V G V  +T     V V            E   D L H + M    K G+  + 
Sbjct: 372 YPPGTMVEGTVRNLTNYGAFVEV------------EEGIDGLLHVSDMSWTRKIGHPNEV 419

Query: 592 ---------QLLVLDNESSNLLLSAKYSLINSAQQLPSDA---SHIHPNSVVHGYVCNII 639
                    Q+L +D E   + L  K       +Q P +           +V G    + 
Sbjct: 420 LEKGQTVSCQVLSVDLERKRIALGLK-----QLRQDPWETDIPDRYTAGDIVTGKATKLT 474

Query: 640 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
             G FV     L G    S+  D +     +   VG  +   +L V+    +I LS +++
Sbjct: 475 NFGVFVELEPGLEGLLHISELADHKIDSPEEVVNVGDDIEVRVLRVDRGERKIGLSRRKA 534

Query: 700 CCSSTD 705
             S  D
Sbjct: 535 QDSPAD 540



 Score = 45.1 bits (105), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 100/486 (20%), Positives = 194/486 (39%), Gaps = 84/486 (17%)

Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
           +  A+E +V  H   + G VV GKV      G +V    G+ A  P    S+ +I +P  
Sbjct: 103 RMRAWERVVSKH---REGDVVTGKVTRKIKGGLLVDI--GINAFLP---ASQVDIRRPPD 154

Query: 408 KFK-VGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSS--YAEATDRLITHGWITKIE 463
               +  E+   +L + + +R  V  +++L++++   L     A+     +  G +  + 
Sbjct: 155 IADYLDREVRCVILSIDEDRRNIVVSRRSLIETERVALREQLLADIAVGQVRTGTVKNLA 214

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 523
             G FV    G+ G    +++G +    P     V + ++  I++      +I L     
Sbjct: 215 DFGAFVDL-GGIDGLLHITDMGWERLKHPGERLRVEEKIEVMILNVDKERGKIALGLKQL 273

Query: 524 PTRVSEDDLVK--LGSLVSG-VVDVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHAT 578
                E    K  +G+ V+G VV+V++  A   +V  +   +G +    ++    + H +
Sbjct: 274 TANPWEQVAEKYAVGARVTGEVVNVMSYGA---FVKLESGIEGLVHISEMSWTRRINHPS 330

Query: 579 VMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 637
               V++ G + + +++ ++ +   + L  K +  +   Q+        P ++V G V N
Sbjct: 331 ---EVVQAGEQVEVVVLGINQQKREISLGMKQTQADPWDQV---VEKYPPGTMVEGTVRN 384

Query: 638 IIETGCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYVG---------QSVRSNILDVN 686
           +   G FV             + +DG    +D+S T  +G         Q+V   +L V+
Sbjct: 385 LTNYGAFVEV----------EEGIDGLLHVSDMSWTRKIGHPNEVLEKGQTVSCQVLSVD 434

Query: 687 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 746
            E  RI L LKQ                           + +  E    + +  G ++ G
Sbjct: 435 LERKRIALGLKQL--------------------------RQDPWETDIPDRYTAGDIVTG 468

Query: 747 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERL 799
           K  +  +FGV V  E    + G +   +LA   ++S       G  I+  +L V + ER 
Sbjct: 469 KATKLTNFGVFVELE--PGLEGLLHISELADHKIDSPEEVVNVGDDIEVRVLRVDRGERK 526

Query: 800 VDLSLK 805
           + LS +
Sbjct: 527 IGLSRR 532


>gi|423349119|ref|ZP_17326775.1| ribosomal protein S1 [Scardovia wiggsiae F0424]
 gi|393703348|gb|EJD65549.1| ribosomal protein S1 [Scardovia wiggsiae F0424]
          Length = 493

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 174/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V K+D++  LL I       + ++   +     P ++ E      +G  +   
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPEDVVE------VGDTI--E 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1144
             L + KE K  RL+L   +        D+        I E D +V G + + + G  GL+
Sbjct: 88   ALVVTKEDKDGRLILSKKRAQYERAWGDVEK------IKEADGVVEGTVIEAVKG--GLI 139

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V IG   +      E++ +    P  G               Q ++ K+LE+ +      
Sbjct: 140  VDIGLRGFLPASLVEMRRVRDLAPYIG---------------QKIQAKILELDKNRN--- 181

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            +V LS R  L+   S                   +  L    + +G + ++ + G F+ L
Sbjct: 182  NVVLSRREYLEETQSEVRETF-------------LSQLKKGQVREGTISSLVNFGAFVDL 228

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK++      + 
Sbjct: 229  G-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKST-----QED 282

Query: 1325 EINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
               + +  HV G IV G+I ++  +G+F+++++  + GL H+SEL+  HV+N ET+ + G
Sbjct: 283  PWQHFARTHVPGQIVKGKITKIVQFGVFVSVDD-GIEGLIHISELANRHVENPETVVKPG 341

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            E V VK++ VD ++RRISL +K +
Sbjct: 342  ETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G V +G + ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQVREGTISSLVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +RI+++ K T          ++       I  G ITKI + G FV   +G++G
Sbjct: 263 LDVDLDRERISLSLKSTQEDPWQHFARTHVPGQ---IVKGKITKIVQFGVFVSVDDGIEG 319

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LIHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSL 362



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 150/374 (40%), Gaps = 44/374 (11%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +     P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPEDVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 560
            ++  +++      R+ LS        +  D+ K+     GVV+     AV   +I    
Sbjct: 85  TIEALVVTKEDKDGRLILSKKRAQYERAWGDVEKIKE-ADGVVEGTVIEAVKGGLIVDIG 143

Query: 561 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL- 618
            +G +P    A  +E   V       G +   ++L LD   +N++LS +  L  +  ++ 
Sbjct: 144 LRGFLP----ASLVEMRRVRDLAPYIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVR 199

Query: 619 PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 678
            +  S +    V  G + +++  G FV  LG + G    S+         S+   VG  V
Sbjct: 200 ETFLSQLKKGQVREGTISSLVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 679 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 738
              +LDV+ +  RI+LSLK     ST     Q HF          +  H           
Sbjct: 259 TVEVLDVDLDRERISLSLK-----STQEDPWQ-HF----------ARTH----------- 291

Query: 739 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAIL 791
           + G +++GK+ +   FGV VS ++   + G I   +LA   VE+       G  +   ++
Sbjct: 292 VPGQIVKGKITKIVQFGVFVSVDDG--IEGLIHISELANRHVENPETVVKPGETVFVKVI 349

Query: 792 DVAKAERLVDLSLK 805
           DV    R + LSLK
Sbjct: 350 DVDLDRRRISLSLK 363



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 162/386 (41%), Gaps = 34/386 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + + P    +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPEDVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGDVEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    +K
Sbjct: 152 LVEMRRVRDLAP----YIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVRETFLSQLK 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  G +  +      V +   G   G I    L+  H++H +    V+K G +   +
Sbjct: 208 KGQVREGTISSLVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  Q      +H+ P  +V G +  I++ G FV     + 
Sbjct: 262 VLDVDLDRERISLSLKSTQEDPWQHFAR--THV-PGQIVKGKITKIVQFGVFVSVDDGIE 318

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 712
           G    S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS   + 
Sbjct: 319 GLIHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPASEDFDP 378

Query: 713 FLLEEKIAMLQSSKHNGSELKWVEGF 738
            L      M      NG+  K+ EGF
Sbjct: 379 ALY----GMPAEYDENGN-YKYPEGF 399



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 84/412 (20%), Positives = 171/412 (41%), Gaps = 81/412 (19%)

Query: 926  SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 985
            ++D G LV+  + +I   E+ L  G    G I   E++  K    E++    ++G T+ A
Sbjct: 32   NFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPEDVV---EVGDTIEA 88

Query: 986  RIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1045
             ++ K +K                 L +S+  ++           +R  G V K+     
Sbjct: 89   LVVTKEDKD--------------GRLILSKKRAQY----------ERAWGDVEKIKEADG 124

Query: 1046 LL--TISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLL 1096
            ++  T+   +K  L I+D     + P+ L E +R      +IG+ +   +L ++K +  +
Sbjct: 125  VVEGTVIEAVKGGL-IVDIGLRGFLPASLVEMRRVRDLAPYIGQKIQAKILELDKNRNNV 183

Query: 1097 RLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYG 1153
             L  R + +       +  ++  +TF+ +   G +  G IS +++   G  V +G  + G
Sbjct: 184  VLSRREYLE-------ETQSEVRETFLSQLKKGQVREGTISSLVNF--GAFVDLG-GVDG 233

Query: 1154 RVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1213
             +H +EL    +  P      G             V  +VL++         + LSL+S+
Sbjct: 234  LIHVSELSWKHIDHPSEVVKVGDK-----------VTVEVLDVDLDRE---RISLSLKST 279

Query: 1214 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1273
             +                P +H  +     P  IV+G +  +   G F+ +   ++  + 
Sbjct: 280  QE---------------DPWQHFARTH--VPGQIVKGKITKIVQFGVFVSVDDGIEGLIH 322

Query: 1274 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
            +S L++ +VE+PE     G+ V  +V+ V+   +R+ ++LK ++      SE
Sbjct: 323  ISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPASE 374


>gi|300812171|ref|ZP_07092615.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            PB2003/044-T3-4]
 gi|300496856|gb|EFK31934.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            PB2003/044-T3-4]
          Length = 401

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 139/271 (51%), Gaps = 45/271 (16%)

Query: 1172 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1226
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1227 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1260
                    T++D P K      H E IE+            L    +V+G V  +T+ G 
Sbjct: 154  GKAIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGS 212

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
              Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HVSE+S  HVD    + 
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEISYKHVDKPSDVL 326

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1411
              G+KVKVK+L +D  KRRISL +K +  +N
Sbjct: 327  TVGQKVKVKVLNIDPSKRRISLSIKQADPEN 357



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 120/249 (48%), Gaps = 20/249 (8%)

Query: 279 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 335
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKAIKVKITEIDPAKNRLI- 172

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 395
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 396 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 453
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 454 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 511
             +  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDP 341

Query: 512 ASRRINLSF 520
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 117/248 (47%), Gaps = 38/248 (15%)

Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
            +IGKA+   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD+V GR+S++
Sbjct: 152  YIGKAIKVKITEIDPAKN--RLILSHKE--LIEEEREQAFENVASQLVVGDVVEGRVSRL 207

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
             +   G  V IG  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  TN--FGSFVDIG-GVDGLVHISEISYKHVDKPS--------DVLK---VGQDVKVKVIGI 253

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
                     + LS++ +                  P    +    L+   +++G VK++T
Sbjct: 254  DND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDVIEGEVKSLT 293

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
            + G F+ ++  +   V +S +S  +V+ P     +G+ V  +VL+++P  +R+ +++K +
Sbjct: 294  NFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQA 353

Query: 1317 DSRTASQS 1324
            D   AS S
Sbjct: 354  DPENASSS 361


>gi|295426289|ref|ZP_06818949.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
 gi|295064028|gb|EFG54976.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
          Length = 401

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDR 258

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K ++     Q+     +NLH GDI  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  NRISLSIKQTEPSPFEQA----TANLHDGDIFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDN 256

Query: 425 --KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 478
              RI+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRNRISLSIKQTEP-------SPFEQATANLHDGDIFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 531
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S ++
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSNE 362



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            +GK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  MGKTMKLKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGA 213

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            FI +   +  GL H+SE+S  HVD    + + G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQT 268



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 34/198 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVG-GVDGLVHISEISYKHVDKP--------SDVLK---V 243

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I                     +  N   LS     P    +   +L   
Sbjct: 244  GQDVKVKVIGID--------------------NDRNRISLSIKQTEPSPFEQATANLHDG 283

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             I +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1306 SKRVEVTLKTSDSRTASQ 1323
             +R+ +++K +DS  +S 
Sbjct: 344  DRRISLSIKAADSNASSN 361



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 136/325 (41%), Gaps = 42/325 (12%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA---ILSSYAEATDRLITHG 457
           ++VK G KFK    LV R  G   +        T +K + A   +   Y   T      G
Sbjct: 64  DLVKTGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYNKLQKDYEAGTP---IEG 117

Query: 458 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIP 511
            +T   + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P
Sbjct: 118 TVTSSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYMGKTMKLKITEIDP 167

Query: 512 ASRRINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 565
              R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +
Sbjct: 168 NKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLV 224

Query: 566 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 624
               ++   +H      V+K G +   +++ +DN+ + + LS K +  +  +Q     ++
Sbjct: 225 HISEIS--YKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQA---TAN 279

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +H   +  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+
Sbjct: 280 LHDGDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLN 339

Query: 685 VNSETGRITLSLK--QSCCSSTDAS 707
           ++    RI+LS+K   S  SS ++S
Sbjct: 340 IDPSDRRISLSIKAADSNASSNESS 364


>gi|425734868|ref|ZP_18853185.1| 30S ribosomal protein S1 [Brevibacterium casei S18]
 gi|425480804|gb|EKU47968.1| 30S ribosomal protein S1 [Brevibacterium casei S18]
          Length = 492

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK---- 1054
            S++P  + V++IG+   F    D +I     G  V G V KVD +  L+ I    +    
Sbjct: 8    SVQPKQVAVNDIGTAEDFLAAVDETIKYFNDGDIVEGTVVKVDRDEVLVDIGYKTEGVVL 67

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P E+ E      +G  +   VL   KE K  RL+L   +        DI
Sbjct: 68   SRELSIKHDVDPGEVVE------VGDPIEALVL--QKEDKEGRLMLSKKRAQYERAWGDI 119

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
                 +    E  +V G + +++ G  GL+V IG   +      E++ +    P  G   
Sbjct: 120  -----EKIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLAPYIG--- 169

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                        Q V+ K++E+ +      +V LS R+ L+   S    D          
Sbjct: 170  ------------QQVEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRHDF--------- 205

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 206  ----LQTLQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPGEVVTVGDE 260

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  HV G IV G++ ++  +G F+ 
Sbjct: 261  VTVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHVIGQIVPGKVTKLVPFGAFVR 315

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E+  + GL H+SEL+  HVD  E +    E + VK++ +D E+RRISL +K +
Sbjct: 316  VED-GIEGLVHISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQA 368



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  PG+   VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPGEVVTVGDEVTVEVLD 267

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G  
Sbjct: 268 VDMDRERVSLSLKATQEDPWQHFARTHVIGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +     P  +  V + +  +++      RRI+LS 
Sbjct: 325 HISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSL 365



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 150/394 (38%), Gaps = 46/394 (11%)

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           V+ K++ V    T      A+  +     D  I  G + K+++    V      +G    
Sbjct: 9   VQPKQVAVNDIGTAEDFLAAVDETIKYFNDGDIVEGTVVKVDRDEVLVDIGYKTEGVVLS 68

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSL 538
            EL +    +P  +  VG  ++  ++       R+ LS        +  D+ K+     +
Sbjct: 69  RELSIKHDVDPGEVVEVGDPIEALVLQKEDKEGRLMLSKKRAQYERAWGDIEKIKEEDGV 128

Query: 539 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 597
           V+G V  V    ++V +  +G+   ++        +E   V       G + + +++ LD
Sbjct: 129 VTGTVIEVVKGGLIVDIGLRGFLPASL--------VEMRRVRDLAPYIGQQVEAKIIELD 180

Query: 598 NESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 656
              +N++LS +  L  +  ++  D    +    V  G V +I+  G FV  LG + G   
Sbjct: 181 KNRNNVVLSRRAWLEQTQSEVRHDFLQTLQKGQVRPGVVSSIVNFGAFVD-LGGVDGLVH 239

Query: 657 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 716
            S+          +   VG  V   +LDV+ +  R++LSLK +           +HF   
Sbjct: 240 VSELSWKHIDHPGEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDP------WQHF--- 290

Query: 717 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT----- 771
                  +  H           +IG ++ GKV +   FG  V  E+  +    I+     
Sbjct: 291 -------ARTH-----------VIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVR 332

Query: 772 HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
           H  L    V     I   ++D+    R + LSLK
Sbjct: 333 HVDLPEQVVSVDETIYVKVIDIDLERRRISLSLK 366



 Score = 47.8 bits (112), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 166/388 (42%), Gaps = 37/388 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    +V      + +     +S    V PG+  +VG  +   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLVDIGYKTEGVVLSRELSIKHDVDPGEVVEVGDPIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 99  KEGRLMLSKKRAQYERAWGDIEKIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ V+ +I+      +++  SRR  L       R      ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHDFLQTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H      V+  G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVTVGDEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  Q      +H+    +V G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQHFAR--THV-IGQIVPGKVTKLVPFGAFVRVEDGIE 321

Query: 653 GFAPRSK-AVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           G    S+ AV  +  DL  +   V +++   ++D++ E  RI+LSLKQ+       +   
Sbjct: 322 GLVHISELAV--RHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQANEGVDPEA--- 376

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGF 738
           E FL      M Q    +G+  K+ EGF
Sbjct: 377 EEFLDPALYGMPQEYDEDGN-YKYPEGF 403


>gi|147816462|emb|CAN64048.1| hypothetical protein VITISV_019942 [Vitis vinifera]
          Length = 378

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 5/77 (6%)

Query: 928  DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
            DV S  + EITEIKP EL+LK GIGFHGR+HITEV D+  NV+EN F N +IGQTV  RI
Sbjct: 191  DVNS--ETEITEIKPFELKLKLGIGFHGRVHITEVCDE--NVIENPFGNLRIGQTVFGRI 246

Query: 988  IAKSNKPDMK-KSFLWE 1003
            +AK+NK +   K+  WE
Sbjct: 247  VAKANKSENNGKNHQWE 263


>gi|260903786|ref|ZP_05912108.1| 30S ribosomal protein S1 [Brevibacterium linens BL2]
          Length = 495

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK---- 1054
            S++P  + V++IG+   F    D +I     G  V G V KVD +  L+ I    +    
Sbjct: 8    SVQPKQVAVNDIGTAEDFLAAVDETIKYFNDGDIVEGTVVKVDRDEVLVDIGYKTEGVVL 67

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P E+ E      +G  +   VL   KE K  RL+L   +        DI
Sbjct: 68   SRELSIKHDVDPGEVVE------VGDEIEALVL--QKEDKEGRLMLSKKRAQYERAWGDI 119

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
                 +    +  +V G + +++ G  GL+V IG   +      E++ +    P  G   
Sbjct: 120  -----EKIKEDNGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLAPYIG--- 169

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                        Q V+ K++E+ +      +V LS R+ L+   S    D          
Sbjct: 170  ------------QQVEAKIIELDKNRN---NVVLSRRAWLEQTQSAVRHDF--------- 205

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 206  ----LQTLQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPGEVVTVGDE 260

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  HV G IV G++ ++  +G F+ 
Sbjct: 261  VTVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHVIGQIVPGKVTKLVPFGAFVR 315

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E+  + GL H+SEL+  HVD  E +    E + VK++ +D E+RRISL +K +
Sbjct: 316  VED-GIEGLVHISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  PG+   VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPGEVVTVGDEVTVEVLD 267

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G  
Sbjct: 268 VDMDRERVSLSLKATQEDPWQHFARTHVIGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +     P  +  V + +  +++      RRI+LS 
Sbjct: 325 HISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSL 365



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 165/388 (42%), Gaps = 37/388 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    +V      + +     +S    V PG+  +VG E+   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLVDIGYKTEGVVLSRELSIKHDVDPGEVVEVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G++GF P S
Sbjct: 99  KEGRLMLSKKRAQYERAWGDIEKIKE--DNGVVTGTVIEVVKGGLIVDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ V+ +I+      +++  SRR  L       R      ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQVEAKIIELDKNRNNVVLSRRAWLEQTQSAVRHDFLQTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H      V+  G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVTVGDEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  Q      +H+    +V G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQHFAR--THV-IGQIVPGKVTKLVPFGAFVRVEDGIE 321

Query: 653 GFAPRSK-AVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           G    S+ AV  +  DL  +   V +++   ++D++ E  RI+LSLKQ+       +   
Sbjct: 322 GLVHISELAV--RHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQANEGVDPEA--- 376

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGF 738
           + FL      M Q    +G+  K+ EGF
Sbjct: 377 DEFLDPALYGMPQEYDEDGN-YKYPEGF 403



 Score = 47.8 bits (112), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 149/394 (37%), Gaps = 46/394 (11%)

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           V+ K++ V    T      A+  +     D  I  G + K+++    V      +G    
Sbjct: 9   VQPKQVAVNDIGTAEDFLAAVDETIKYFNDGDIVEGTVVKVDRDEVLVDIGYKTEGVVLS 68

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSL 538
            EL +    +P  +  VG  ++  ++       R+ LS        +  D+ K+     +
Sbjct: 69  RELSIKHDVDPGEVVEVGDEIEALVLQKEDKEGRLMLSKKRAQYERAWGDIEKIKEDNGV 128

Query: 539 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 597
           V+G V  V    ++V +  +G+   ++        +E   V       G + + +++ LD
Sbjct: 129 VTGTVIEVVKGGLIVDIGLRGFLPASL--------VEMRRVRDLAPYIGQQVEAKIIELD 180

Query: 598 NESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 656
              +N++LS +  L  +   +  D    +    V  G V +I+  G FV  LG + G   
Sbjct: 181 KNRNNVVLSRRAWLEQTQSAVRHDFLQTLQKGQVRPGVVSSIVNFGAFVD-LGGVDGLVH 239

Query: 657 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 716
            S+          +   VG  V   +LDV+ +  R++LSLK +           +HF   
Sbjct: 240 VSELSWKHIDHPGEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDP------WQHF--- 290

Query: 717 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT----- 771
                  +  H           +IG ++ GKV +   FG  V  E+  +    I+     
Sbjct: 291 -------ARTH-----------VIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVR 332

Query: 772 HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
           H  L    V     I   ++D+    R + LSLK
Sbjct: 333 HVDLPEQVVSVDETIYVKVIDIDLERRRISLSLK 366


>gi|313123536|ref|YP_004033795.1| ssu ribosomal protein s1p [Lactobacillus delbrueckii subsp.
            bulgaricus ND02]
 gi|422845529|ref|ZP_16892239.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis DSM
            20072]
 gi|312280099|gb|ADQ60818.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
            bulgaricus ND02]
 gi|325684297|gb|EGD26470.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis DSM
            20072]
          Length = 401

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 139/271 (51%), Gaps = 45/271 (16%)

Query: 1172 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1226
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1227 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1260
                    T++D P K      H E IE+            L    +V+G V  +T+ G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGS 212

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
              Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HVSE+S  HVD    + 
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEISYKHVDKPSDVL 326

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1411
              G+KVKVK+L +D  KRRISL +K +  +N
Sbjct: 327  TVGQKVKVKVLNIDPSKRRISLSIKQADPEN 357



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 120/249 (48%), Gaps = 20/249 (8%)

Query: 279 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 335
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 395
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 396 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 453
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 454 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 511
             +  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDP 341

Query: 512 ASRRINLSF 520
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 34/199 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD+V GR+S++ +   G  V IG  + G VH +E+    V  P         D L     
Sbjct: 197  GDVVEGRVSRLTN--FGSFVDIG-GVDGLVHISEISYKHVDKP--------SDVLK---V 242

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +                  P    +    L+  
Sbjct: 243  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATSSLNEG 282

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             +++G VK++T+ G F+ ++  +   V +S +S  +V+ P     +G+ V  +VL+++P 
Sbjct: 283  DVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPS 342

Query: 1306 SKRVEVTLKTSDSRTASQS 1324
             +R+ +++K +D   AS S
Sbjct: 343  KRRISLSIKQADPENASSS 361



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 140/365 (38%), Gaps = 53/365 (14%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 529
           GV+G   R +   D          +G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 530 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 587 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 645
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 766 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 818
           + G +   +++   V+        G  ++  +L++  ++R + LS+K    +    +N  
Sbjct: 305 IQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQADPENASSSNDR 364

Query: 819 RQAQK 823
            +A++
Sbjct: 365 PRARR 369


>gi|383807350|ref|ZP_09962910.1| 30S ribosomal protein S1 [Candidatus Aquiluna sp. IMCC13023]
 gi|383298704|gb|EIC91319.1| 30S ribosomal protein S1 [Candidatus Aquiluna sp. IMCC13023]
          Length = 485

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 191/417 (45%), Gaps = 70/417 (16%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKA--- 1055
            + KP  + V++IGS+  F    + ++     G  ++G V K+D +  LL +    +    
Sbjct: 6    TAKPVQIAVNDIGSEADFLAAVEATLKFFNDGDLISGTVVKIDRDEVLLDVGYKTEGVIP 65

Query: 1056 --QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1113
              +L I   A +P+++        +G A+   VL   KE K  RL+L   +        D
Sbjct: 66   SRELSIRQDA-DPNDI------VKVGDAIEALVL--QKEDKEGRLILSKKRAQYERAWGD 116

Query: 1114 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            +        I E D +V G + +++ G  G++V IG   +      EL+ +    P  G 
Sbjct: 117  VER------IKEADGVVTGTVIEVVKG--GVIVDIGLRGFLPASLIELRRVRDLGPYLGT 168

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
            +               V+ K+LE+ +      +V LS R+ L+   S N S         
Sbjct: 169  E---------------VEAKILELDKNRN---NVVLSRRALLEQSQSENRSTF------- 203

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
                  + DL    +  G V ++ + G FI L   +D  V +S LS  ++E   +   +G
Sbjct: 204  ------LNDLVKGQVRTGVVSSIVNFGAFIDLG-GVDGLVHVSELSWKHIEHASEVVEVG 256

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGL 1350
            + V   VL V+   +RV ++LK      A+Q +   L +  H +G  + G++ ++  +G 
Sbjct: 257  QEVTVEVLEVDQERERVSLSLK------ATQEDPWQLFARTHAIGQYIPGKVTKIVPFGA 310

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            F+ + +  + GL H+SELS  HV++ + +    ++V VK++ +D E+RRISL +K +
Sbjct: 311  FVRVAD-GIEGLVHISELSSKHVEHADQVVTVNQEVFVKLIDIDLERRRISLSLKQA 366



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 151/352 (42%), Gaps = 37/352 (10%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G ++ G V+ +D    ++      + + P   +S  +   P    KVG  +   VL  + 
Sbjct: 37  GDLISGTVVKIDRDEVLLDVGYKTEGVIPSRELSIRQDADPNDIVKVGDAIEALVLQKED 96

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA D ++T G + ++ K G  V    G++GF P S
Sbjct: 97  KEGRLILSKKRAQYERAWGDVERIKEA-DGVVT-GTVIEVVKGGVIVDI--GLRGFLPAS 152

Query: 483 ELGL----DPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVS-EDD 531
            + L    D G       ++G  V+ +I+      +++  SRR  L       R +  +D
Sbjct: 153 LIELRRVRDLGP------YLGTEVEAKILELDKNRNNVVLSRRALLEQSQSENRSTFLND 206

Query: 532 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEF 590
           LVK G + +GVV  +      + +   G   G +    L+  H+EHA+    V++ G E 
Sbjct: 207 LVK-GQVRTGVVSSIVNFGAFIDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEV 259

Query: 591 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFL 648
             ++L +D E   + LS K +  +  Q      +  H     + G V  I+  G FVR  
Sbjct: 260 TVEVLEVDQERERVSLSLKATQEDPWQLF----ARTHAIGQYIPGKVTKIVPFGAFVRVA 315

Query: 649 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
             + G    S+          +   V Q V   ++D++ E  RI+LSLKQ+ 
Sbjct: 316 DGIEGLVHISELSSKHVEHADQVVTVNQEVFVKLIDIDLERRRISLSLKQAL 367


>gi|300871842|ref|YP_003786715.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000]
 gi|300689543|gb|ADK32214.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000]
          Length = 556

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 15/345 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S++K G +V+GKV  ++ FGA +Q   G+     +P+MS  +I+ P      G E  F+V
Sbjct: 189 SNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQV 248

Query: 420 LGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
           L V K KR      K L               D  I  G +T ++K G FV  Y GV+G 
Sbjct: 249 LSVDKEKRKVDLGIKQLEGDTWYKFVEEYHVGD--IIKGEVTTVKKFGAFVNVYEGVEGL 306

Query: 479 APRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 534
              S+L  +     P+    VG  ++C+I+      R++ L        P   +E D   
Sbjct: 307 IHVSDLSWNSHVNNPNDFVKVGSYLECKILDMNVPERKLTLGLKQVKDNPWDSAERDFPV 366

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
             S+   V  +    A  V+ +  G  +G        D + +   +K  IK   E + ++
Sbjct: 367 KSSVKCKVKRIFKDFA--VFELPNGL-EGICDISDF-DWMNNTVNIKDYIKENEEVEMVI 422

Query: 595 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
           + +D +   + LS K++  +  +    D +H H  S+V+G V  II++G  V     L G
Sbjct: 423 MSIDRDKQRIKLSYKHTKESPWRVF--DKAHPH-GSIVNGTVKAIIDSGVIVSLENDLEG 479

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
           +   S+    +   L     VG+S    + +VN    RI+LS ++
Sbjct: 480 YMHISQIDLPKGETLESVLKVGESYPFVVREVNQVKRRISLSRRE 524



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 95/170 (55%), Gaps = 6/170 (3%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E + +L    IV+G VKN+   G FI L+  LD  + + N+S   + +P+     G+   
Sbjct: 186  EYLSNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERK 245

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
             +VLSV+   ++V++ +K  +  T  +     +   HVGDI+ G++  V+ +G F+ +  
Sbjct: 246  FQVLSVDKEKRKVDLGIKQLEGDTWYKF----VEEYHVGDIIKGEVTTVKKFGAFVNV-Y 300

Query: 1357 TNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  EGVEGLIHVSDLSWNSHVNNPNDFVKVGSYLECKILDMNVPERKLTLGLK 350



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 1318 SRTASQSEINN------LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1371
            SR   Q E  N      LSNL  GDIV G++K +E +G FI +    L G   +  +S  
Sbjct: 171  SRRVLQEETQNKVIEEYLSNLKEGDIVEGKVKNIEKFGAFIQL-TEGLDGFLAIPNMSWA 229

Query: 1372 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             + N + I   GE+ K ++L VDKEKR++ LG+K
Sbjct: 230  KIINPKNIITKGEERKFQVLSVDKEKRKVDLGIK 263



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 162/430 (37%), Gaps = 71/430 (16%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G I + +    F+ F   V+G   R+E   +P             VK   + ++   
Sbjct: 31  VVSGKIVQFDDTDVFIDFNYKVEGKINRNEFDKEP-------------VKGEEIEAVIKG 77

Query: 514 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGTIPTEHLA- 571
           +  N  +++   R  E D  K   L+   V   TP N VV   I  G++   +       
Sbjct: 78  QDNNKGYVILSKR--EIDKRKAQDLIEDAVKNATPINGVVKEAIKGGFTVSIMGHSAFCP 135

Query: 572 -DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 628
              ++ +  +K     G EF Q  ++D + +  ++ ++  L    Q   +    S++   
Sbjct: 136 FSQIDISRGIKEADYIGKEF-QFKIIDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEG 194

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            +V G V NI + G F++    L GF         +  +       G+  +  +L V+ E
Sbjct: 195 DIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKE 254

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             ++ L +KQ                LE             +  K+VE + +G +I+G+V
Sbjct: 255 KRKVDLGIKQ----------------LE-----------GDTWYKFVEEYHVGDIIKGEV 287

Query: 749 HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 802
                FG  V+  E      H     + +H       V+ GS ++  ILD+   ER + L
Sbjct: 288 TTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGSYLECKILDMNVPERKLTL 347

Query: 803 SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 862
            LK V               K      A +D  V  +V   V+ + +++ V  LP  N  
Sbjct: 348 GLKQV---------------KDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELP--NGL 390

Query: 863 IGYASVSDYN 872
            G   +SD++
Sbjct: 391 EGICDISDFD 400



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 143/325 (44%), Gaps = 52/325 (16%)

Query: 1085 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI---HEGDIVGGRISKILSGVG 1141
             VLS++KEK+ + L ++  +            D    F+   H GDI+ G ++ +     
Sbjct: 247  QVLSVDKEKRKVDLGIKQLE-----------GDTWYKFVEEYHVGDIIKGEVTTVKKF-- 293

Query: 1142 GLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            G  V +   + G +H ++L  N  V++P        F  +     G +++CK+L+++   
Sbjct: 294  GAFVNVYEGVEGLIHVSDLSWNSHVNNP------NDFVKV-----GSYLECKILDMNVPE 342

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
            R    + L L+   D    +   D         K     +D +   +  G ++ +     
Sbjct: 343  R---KLTLGLKQVKDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNG-LEGICDISD 398

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F  ++  +       N+ D   E+ E E  I        +S++   +R++++ K +    
Sbjct: 399  FDWMNNTV-------NIKDYIKENEEVEMVI--------MSIDRDKQRIKLSYKHT---K 440

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
             S   + + ++ H G IV G +K +   G+ +++EN +L G  H+S++     + +E++ 
Sbjct: 441  ESPWRVFDKAHPH-GSIVNGTVKAIIDSGVIVSLEN-DLEGYMHISQIDLPKGETLESVL 498

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMK 1405
            + GE     + +V++ KRRISL  +
Sbjct: 499  KVGESYPFVVREVNQVKRRISLSRR 523


>gi|300781295|ref|ZP_07091149.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
 gi|300533002|gb|EFK54063.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
          Length = 491

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 184/406 (45%), Gaps = 60/406 (14%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1064
            + +++IGS   F    D +I     G  VTG V KVD++  LL I    K +  IL    
Sbjct: 9    VAINDIGSSEEFLAAVDATIKYFNDGDIVTGTVVKVDHDEVLLDIG--YKTEGVILSREL 66

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL--RPFQDGISDKTVDISNDNMQTF 1122
                  +      IG  +   VL+  KE K  RL+L  +  Q   +  T++    N Q  
Sbjct: 67   SIKHDIDPDEVVQIGDEIDALVLT--KEDKEGRLLLSKKRAQYERAWGTIEELQKNDQP- 123

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
                  V G + +++ G  GL++ IG   +      E++ +   DP  G           
Sbjct: 124  ------VTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----------- 164

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
                Q ++ K++E+ +      +V LS R+ L+   S   SD              +  L
Sbjct: 165  ----QELEAKIIELDKHRN---NVVLSRRAYLEETQSAVRSDF-------------LHQL 204

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V
Sbjct: 205  EKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDV 263

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVG 1361
            +   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   + G
Sbjct: 264  DLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEG 317

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L H+SEL++ HV+  + +   G++V VK++ +D E+RRISL +K +
Sbjct: 318  LVHISELAQRHVEVPDQVVEVGQEVMVKVIDIDLERRRISLSLKQA 363



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LEKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  +  VGQ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVEVGQEVMVKVIDIDLERRRISLSL 360



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + +     +S    + P +  ++G E+   VL  + 
Sbjct: 34  GDIVTGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDIDPDEVVQIGDEIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +  D+ +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLLLSKKRAQYERAWGTIEEL-QKNDQPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKHRNNVVLSRRAYLEETQSAVRSDFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLEKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VGQ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVEVGQEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            +++E      +  M  S    G+ +          +W+EG+
Sbjct: 366 DYIEE--FDPSRYGMADSYDEQGNYIFPEGFDPETNEWMEGY 405


>gi|431807379|ref|YP_007234277.1| 30S ribosomal protein S1 [Brachyspira pilosicoli P43/6/78]
 gi|434382057|ref|YP_006703840.1| 30S ribosomal protein S1 [Brachyspira pilosicoli WesB]
 gi|404430706|emb|CCG56752.1| 30S ribosomal protein S1 [Brachyspira pilosicoli WesB]
 gi|430780738|gb|AGA66022.1| 30S ribosomal protein S1 [Brachyspira pilosicoli P43/6/78]
          Length = 556

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 15/345 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S++K G +V+GKV  ++ FGA +Q   G+     +P+MS  +I+ P      G E  F+V
Sbjct: 189 SNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQV 248

Query: 420 LGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
           L V K KR      K L               D  I  G +T ++K G FV  Y GV+G 
Sbjct: 249 LSVDKEKRKVDLGIKQLEGDTWYKFVEEYHVGD--IIKGEVTTVKKFGAFVNVYEGVEGL 306

Query: 479 APRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 534
              S+L  +     P+    VG  ++C+I+      R++ L        P   +E D   
Sbjct: 307 IHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLKQVKDNPWDSAERDFPV 366

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
             S+   V  +    A  V+ +  G  +G        D + +   +K  IK   E + ++
Sbjct: 367 KSSVKCKVKRIFKDFA--VFELPNGL-EGICDISDF-DWMNNTVNIKDYIKENEEVEMVI 422

Query: 595 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
           + +D +   + LS K++  +  +    D +H H  S+V+G V  II++G  V     L G
Sbjct: 423 MSIDRDKQRIKLSYKHTKESPWRVF--DKAHPH-GSIVNGTVKAIIDSGVIVSLENDLEG 479

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
           +   S+    +   L     VG+S    + +VN    RI+LS ++
Sbjct: 480 YMHISQIDLPKGETLESVLKVGESYPFVVREVNQVKRRISLSRRE 524



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 95/170 (55%), Gaps = 6/170 (3%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E + +L    IV+G VKN+   G FI L+  LD  + + N+S   + +P+     G+   
Sbjct: 186  EYLSNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERK 245

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
             +VLSV+   ++V++ +K  +  T  +     +   HVGDI+ G++  V+ +G F+ +  
Sbjct: 246  FQVLSVDKEKRKVDLGIKQLEGDTWYKF----VEEYHVGDIIKGEVTTVKKFGAFVNV-Y 300

Query: 1357 TNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  EGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLK 350



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 1318 SRTASQSEINN------LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1371
            SR   Q E  N      LSNL  GDIV G++K +E +G FI +    L G   +  +S  
Sbjct: 171  SRRVLQEETQNKVIEEYLSNLKEGDIVEGKVKNIEKFGAFIQL-TEGLDGFLAIPNMSWA 229

Query: 1372 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             + N + I   GE+ K ++L VDKEKR++ LG+K
Sbjct: 230  KIINPKNIITKGEERKFQVLSVDKEKRKVDLGIK 263



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 90/430 (20%), Positives = 162/430 (37%), Gaps = 71/430 (16%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G I + +    F+ F   V+G   R+E   +P             VK   + ++   
Sbjct: 31  VVSGKIVQFDDTDVFIDFNYKVEGKINRNEFDKEP-------------VKGEEIEAVIKG 77

Query: 514 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGTIPTEHLA- 571
           +  N  +++   R  E D  K   L+   V   TP N VV   I  G++   +       
Sbjct: 78  QDNNKGYVILSKR--EIDKRKAQDLIEDAVKNATPINGVVKEAIKGGFTVSIMGHSAFCP 135

Query: 572 -DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 628
              ++ +  +K     G EF Q  ++D + +  ++ ++  L    Q   +    S++   
Sbjct: 136 FSQIDISRGIKEADYIGKEF-QFKIIDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEG 194

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            +V G V NI + G F++    L GF         +  +       G+  +  +L V+ E
Sbjct: 195 DIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKE 254

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             ++ L +KQ                LE             +  K+VE + +G +I+G+V
Sbjct: 255 KRKVDLGIKQ----------------LE-----------GDTWYKFVEEYHVGDIIKGEV 287

Query: 749 HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 802
                FG  V+  E      H     + +H       V+ G+ ++  ILD+   ER + L
Sbjct: 288 TTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTL 347

Query: 803 SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 862
            LK V               K      A +D  V  +V   V+ + +++ V  LP  N  
Sbjct: 348 GLKQV---------------KDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELP--NGL 390

Query: 863 IGYASVSDYN 872
            G   +SD++
Sbjct: 391 EGICDISDFD 400



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 143/325 (44%), Gaps = 52/325 (16%)

Query: 1085 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI---HEGDIVGGRISKILSGVG 1141
             VLS++KEK+ + L ++  +            D    F+   H GDI+ G ++ +     
Sbjct: 247  QVLSVDKEKRKVDLGIKQLE-----------GDTWYKFVEEYHVGDIIKGEVTTVKKF-- 293

Query: 1142 GLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            G  V +   + G +H ++L  N  V++P        F  +     G +++CK+L+++   
Sbjct: 294  GAFVNVYEGVEGLIHVSDLSWNSHVNNP------NDFVKV-----GAYLECKILDMNVPE 342

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
            R    + L L+   D    +   D         K     +D +   +  G ++ +     
Sbjct: 343  R---KLTLGLKQVKDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNG-LEGICDISD 398

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F  ++  +       N+ D   E+ E E  I        +S++   +R++++ K +    
Sbjct: 399  FDWMNNTV-------NIKDYIKENEEVEMVI--------MSIDRDKQRIKLSYKHT---K 440

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
             S   + + ++ H G IV G +K +   G+ +++EN +L G  H+S++     + +E++ 
Sbjct: 441  ESPWRVFDKAHPH-GSIVNGTVKAIIDSGVIVSLEN-DLEGYMHISQIDLPKGETLESVL 498

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMK 1405
            + GE     + +V++ KRRISL  +
Sbjct: 499  KVGESYPFVVREVNQVKRRISLSRR 523


>gi|163845717|ref|YP_001633761.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
            J-10-fl]
 gi|222523422|ref|YP_002567892.1| RNA binding S1 domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163667006|gb|ABY33372.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447301|gb|ACM51567.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 520

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 18/212 (8%)

Query: 1212 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1271
            S+  G  +T +S      D P K   +++DL P M ++G V ++   G F+ +    D  
Sbjct: 72   SASSGSEATGASFTPVSDDQPHKP-RRLKDLQPGMELEGKVTSIALYGVFVDIGVGRDGL 130

Query: 1272 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK----------------T 1315
            V +S +SD  +E+P +   IG  V   V S+EP ++R+ +T++                 
Sbjct: 131  VHISEMSDRRIETPSEVVQIGDTVKVWVKSIEPEARRISLTMRDPARAETPRRARQPQPQ 190

Query: 1316 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
                   + +   L+ L VGD+V G I     +G F  I      GL HVSEL+E  V+ 
Sbjct: 191  QQQPRRQEVDREKLAALRVGDVVEGVITGFAPFGAFADI-GVGKDGLIHVSELAEGRVEK 249

Query: 1376 IETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             E   + GE+ + KIL++D E  RISL ++ +
Sbjct: 250  PEDAVKVGERYQFKILEIDGEAARISLSLRRA 281


>gi|395242108|ref|ZP_10419107.1| 30S Ribosomal protein S1 [Lactobacillus pasteurii CRBIP 24.76]
 gi|394480469|emb|CCI85347.1| 30S Ribosomal protein S1 [Lactobacillus pasteurii CRBIP 24.76]
          Length = 402

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +V+G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDALKVGQDVKVKVIGIDDDR 258

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K ++     Q+     S LH GDI  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TSGLHEGDIFEGEVKSLTNFGAFVEVTD-GIQGLVHVS 313

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            E+S  HVD    + + G+ VKVK+L +D  ++RISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQSVKVKVLGIDPSEKRISLSIKAT 354



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 14/162 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G VV+GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V+G+  
Sbjct: 198 GDVVEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDALKVGQDVKVKVIGIDD 256

Query: 425 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 478
            R  I+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATSGLHEGDIFEGEVKSLTNFGAFVEVTDGIQGL 309

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
              SE+      +PS +  VGQ VK +++   P+ +RI+LS 
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQSVKVKVLGIDPSEKRISLSI 351



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD+V G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFGKVASQLVVGDVVEGKVSRLTNFGA 213

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            FI +   +  GL H+SE+S  HVD      + G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDALKVGQDVKVKVIGIDDDRHRISLSIKQT 268



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 34/200 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD+V G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVVEGKVSRLTNF--GAFIDVG-GVDGLVHISEISYKHVDKP--------SDALK---V 243

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +                  P    +    L   
Sbjct: 244  GQDVKVKVIGIDDD---RHRISLSIKQT-----------------EPSPFEQATSGLHEG 283

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             I +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL ++P 
Sbjct: 284  DIFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLGIDPS 343

Query: 1306 SKRVEVTLKTSDSRTASQSE 1325
             KR+ +++K +D   +S  +
Sbjct: 344  EKRISLSIKATDENASSNED 363



 Score = 48.1 bits (113), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 129/322 (40%), Gaps = 37/322 (11%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           E+VKPG+ FK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  ELVKPGETFKA---LVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNPIEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        SS Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SSRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 515 RINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS         E+   K+      G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFGKVASQLVVGDVVEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H       +K G +   +++ +D++   + LS K +  +  +Q     S +H 
Sbjct: 228 EIS--YKHVDKPSDALKVGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQA---TSGLHE 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             +  G V ++   G FV     + G    S+  +      S    VGQSV+  +L ++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLGIDP 342

Query: 688 ETGRITLSLK---QSCCSSTDA 706
              RI+LS+K   ++  S+ DA
Sbjct: 343 SEKRISLSIKATDENASSNEDA 364


>gi|296140136|ref|YP_003647379.1| RNA binding S1 domain-containing protein [Tsukamurella paurometabola
            DSM 20162]
 gi|296028270|gb|ADG79040.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM 20162]
          Length = 499

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 177/391 (45%), Gaps = 58/391 (14%)

Query: 1022 FEECDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFH 1077
            F + D+  G  V G + KVD +  LL I       + ++   +    +PSE+       +
Sbjct: 33   FNDGDIVEGTIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEV------VN 86

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
            +G AV   VL+  KE K  RL+L   +        + +   ++    + + V G + +++
Sbjct: 87   VGDAVEALVLT--KEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEAVKGTVIEVV 139

Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
             G  GL++ IG   +      E++ +    P  G +               ++ K++E+ 
Sbjct: 140  KG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE---------------IEAKIIELD 182

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1257
            +      +V LS R+ L+   S   S+              +  L    + +G V ++ +
Sbjct: 183  KNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVN 226

Query: 1258 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
             G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK + 
Sbjct: 227  FGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQ 285

Query: 1318 SRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
                 Q      +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  
Sbjct: 286  EDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVP 339

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +   G+   VK++ +D E+RRISL +K +
Sbjct: 340  DQVVSVGDDAMVKVIDIDLERRRISLSLKQA 370



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 150/378 (39%), Gaps = 50/378 (13%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +PS + +VG  V+  +++     
Sbjct: 43  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDAVEALVLTKEDKE 102

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 154

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-IHPN 628
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  H +   
Sbjct: 155 ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKG 214

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            V  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 215 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 273

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 274 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 306

Query: 749 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 801
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 307 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLERRRIS 364

Query: 802 LSLKTVFIDRFREANSNR 819
           LSLK    D   E + ++
Sbjct: 365 LSLKQANEDYTEEFDPSK 382



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 163/405 (40%), Gaps = 48/405 (11%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F   D+  G +V+G ++ VD    ++      + + P   +S    V P +   VG  + 
Sbjct: 33  FNDGDIVEGTIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDAVE 92

Query: 417 FRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL  + K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G
Sbjct: 93  ALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--G 148

Query: 475 VQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTR 526
           ++GF P S  E+      +P    ++G+ ++ +I+      +++  SRR  L       R
Sbjct: 149 LRGFLPASLVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVR 204

Query: 527 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 585
                 ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+ 
Sbjct: 205 SEFLHQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVT 258

Query: 586 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGC 643
            G E   ++L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G 
Sbjct: 259 VGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGA 314

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           FVR    + G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    
Sbjct: 315 FVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLERRRISLSLKQANEDY 374

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           T      E F    K  M  S   NG  +          +W+EGF
Sbjct: 375 T------EEF-DPSKYGMADSYDENGEYIFPEGFDPETNEWLEGF 412


>gi|271964470|ref|YP_003338666.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
 gi|270507645|gb|ACZ85923.1| Ribosomal protein S1-like protein [Streptosporangium roseum DSM
            43021]
          Length = 500

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 191/408 (46%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS+  F    D++I     G  V G V KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEDFLAAIDLTIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+++ E      +G+ V   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPADVVE------VGEHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKDEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+    T S    T ++T         
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRQTFLNT--------- 208

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 209  -LQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 266

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ +E   +
Sbjct: 267  DVDMERERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGRVTKLVPFGAFVRVEE-GI 320

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HV+  E + + G+++ VKI+ +D E+RRISL +K +
Sbjct: 321  EGLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQA 368



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 154/356 (43%), Gaps = 29/356 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P    +VG  +   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPADVVEVGEHVEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKD-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D E   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMERERVSLSLKATQEDPWQQF---ARTHQIGQVVPGRVTKLVPFGAFVRVEEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 708
           G    S+  +       +   VG  +   I+D++ E  RI+LSLKQ+  S+T A  
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQANESATGADI 377


>gi|258511670|ref|YP_003185104.1| RNA binding S1 domain-containing protein [Alicyclobacillus
            acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478396|gb|ACV58715.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius subsp.
            acidocaldarius DSM 446]
          Length = 385

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 168/391 (42%), Gaps = 56/391 (14%)

Query: 1021 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1076
            +  +  V  G  VTG V  VD+    + +      H+  Q         PS++       
Sbjct: 8    MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDV------V 61

Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
             +G  VT  VL ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 62   SVGSTVTAQVLKVDMESGHVTLSKRRAEQASA-------WERMQQLLESGEPIEVEIRDV 114

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
            + G  GLV  +G   +               P S  D    + L  + +GQ ++ KV+E+
Sbjct: 115  VKG--GLVADVGVRAF--------------IPASLVDRHFVENLEQF-KGQKLRAKVIEV 157

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
                       LS R+ L+  S   +  L              E+L P  +++G V+ +T
Sbjct: 158  DPQKNKLI---LSRRAVLEEESEARARKL-------------FEELKPGDVIEGTVQRLT 201

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
              G F+ +    D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +
Sbjct: 202  DFGAFVDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAA 260

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
                  +           GD+V G ++RV  +G F+ +    L GL HVS++S +HVD  
Sbjct: 261  ----LPEPWETYAHEFQPGDVVQGVVRRVVDFGAFVEL-RPGLEGLVHVSQISNEHVDKP 315

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + + G++V V++L VD E++RISL M+ S
Sbjct: 316  SDVLQPGQEVTVRVLSVDPERKRISLSMRDS 346



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 12/251 (4%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G +T ++ HG  V   +G +G     EL   PG  PS +  VG  V  +++     S
Sbjct: 19  VVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTVTAQVLKVDMES 78

Query: 514 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
             + LS        + + + +L   G  +   +  V    +V  V  + +   ++   H 
Sbjct: 79  GHVTLSKRRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVADVGVRAFIPASLVDRHF 138

Query: 571 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNS 629
            ++LE     K   K       ++ +D + + L+LS +  L   ++         + P  
Sbjct: 139 VENLEQFKGQKLRAK-------VIEVDPQKNKLILSRRAVLEEESEARARKLFEELKPGD 191

Query: 630 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
           V+ G V  + + G FV  +G   G    S+         S+    G  V+  +L V+ E 
Sbjct: 192 VIEGTVQRLTDFGAFVD-VGGADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEA 250

Query: 690 GRITLSLKQSC 700
           GRI+LS+K + 
Sbjct: 251 GRISLSIKAAL 261



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 144/358 (40%), Gaps = 31/358 (8%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           + T + V+ G VV G+V AVD  G  V  P G +       +S      P     VG+ +
Sbjct: 8   MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTV 67

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 470
             +VL V  +   VT  K     + A  +S  E   +L+  G   ++E     K G    
Sbjct: 68  TAQVLKVDMESGHVTLSK-----RRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVAD 122

Query: 471 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
              GV+ F P S +  D     +     GQ ++ +++   P   ++ LS        SE 
Sbjct: 123 V--GVRAFIPASLV--DRHFVENLEQFKGQKLRAKVIEVDPQKNKLILSRRAVLEEESEA 178

Query: 531 DLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 583
              KL      G ++ G V  +T     V V   G + G +    L+  H+ H +    V
Sbjct: 179 RARKLFEELKPGDVIEGTVQRLTDFGAFVDV---GGADGLVHISELSFSHVNHPS---EV 232

Query: 584 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
           ++ G     ++L +D E+  + LS K +L    +     A    P  VV G V  +++ G
Sbjct: 233 VREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETY---AHEFQPGDVVQGVVRRVVDFG 289

Query: 643 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
            FV     L G    S+  +      S     GQ V   +L V+ E  RI+LS++ S 
Sbjct: 290 AFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSS 347



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 154/363 (42%), Gaps = 36/363 (9%)

Query: 87  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGID----VK 141
           L + L+   V+EG V+T  V +++DHG  +   LP  + G +    L+   G      V 
Sbjct: 5   LREMLTDAAVREGDVVTGEVTAVDDHGVTV--ALPHGYEGHISPQELSAVPGTHPSDVVS 62

Query: 142 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 201
            G  +   V  +D     V LS      +    +  +     LL  G  +   ++ +++ 
Sbjct: 63  VGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQQ-----LLESGEPIEVEIRDVVKG 117

Query: 202 GVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 258
           G++  +    +   + VD   ++N         +  + +K+ A+++ VDP    + L+  
Sbjct: 118 GLVADVGVRAFIPASLVDRHFVENL--------EQFKGQKLRAKVIEVDPQKNKLILSRR 169

Query: 259 PYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
             L        R     +K GD+ + +     D   G  +D+          V IS+++ 
Sbjct: 170 AVLEEESEARARKLFEELKPGDVIEGTVQRLTD--FGAFVDVGGAD----GLVHISELSF 223

Query: 314 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
             V    +  +EG  V+VR+L      G  +  +KA+  E       + +PG VV+G V 
Sbjct: 224 SHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVR 283

Query: 374 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 431
            V  FGA V+   G++ L  +  +S   + KP    + G E+  RVL V  + KRI+++ 
Sbjct: 284 RVVDFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSM 343

Query: 432 KKT 434
           + +
Sbjct: 344 RDS 346


>gi|185535577|gb|ACC77867.1| 30S ribosomal protein S1 [Staphylococcus xylosus]
          Length = 393

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 134/269 (49%), Gaps = 41/269 (15%)

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            GGLVV +G    G V  + +    + D             SG+ EGQ +K KV E+    
Sbjct: 121  GGLVVDVGQR--GFVPASLISTDFIED------------FSGF-EGQILKLKVEELDPA- 164

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                 V LS R +++ + +    D            E +E L+   +++G V  +T+ G 
Sbjct: 165  --NNRVILS-RKAVEALENAEKKD------------ELLESLNEGDVIEGKVARLTNFGA 209

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DS 1318
            F+ +   +D  V +S LS  +V+SPE    IG  V  ++ SV+  S+R+ +++K +    
Sbjct: 210  FVDIG-GVDGLVHVSELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDTLPSP 268

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
              A + EIN       G+++ G + R+ ++G F+ I+   + GL H+SE+S  H+     
Sbjct: 269  FEAIKGEINE------GEVIEGTVVRLTNFGAFVEIQ-PGVQGLVHISEISHSHIGTPGE 321

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + + GEKV VKIL VD E  RISL +K++
Sbjct: 322  VLQPGEKVSVKILSVDPENERISLSIKAT 350



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 93/170 (54%), Gaps = 10/170 (5%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP--IGKLVAG 1297
            E L  N  ++  V  V   G  + + ++    V  S +S  ++E    +F    G+++  
Sbjct: 103  EQLDNNQTIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSGFEGQILKL 156

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +V  ++P + RV ++ K  ++   ++ +   L +L+ GD++ G++ R+ ++G F+ I   
Sbjct: 157  KVEELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGV 216

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  GL HVSELS +HV + E +   G+ VKVKI  VDK+  RISL +K +
Sbjct: 217  D--GLVHVSELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDT 264



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 108/248 (43%), Gaps = 18/248 (7%)

Query: 279 QSKVVRVDRGLGLLLDIPS---TPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR-IL 334
           ++KV  V +G GL++D+      P S  +   I D +  E + L+ K +E      R IL
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSGFEGQILKLKVEELDPANNRVIL 170

Query: 335 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 394
             + +E L     K    E L         G V++GKV  + +FGA V   GGV  L  +
Sbjct: 171 SRKAVEALENAEKKDELLESL-------NEGDVIEGKVARLTNFGAFVDI-GGVDGLVHV 222

Query: 395 PHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDR 452
             +S   +  P     +G  +  ++  V   S+RI+++ K TL     AI     E    
Sbjct: 223 SELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDTLPSPFEAIKGEINEGE-- 280

Query: 453 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 512
            +  G + ++   G FV    GVQG    SE+       P  +   G+ V  +I+S  P 
Sbjct: 281 -VIEGTVVRLTNFGAFVEIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVKILSVDPE 339

Query: 513 SRRINLSF 520
           + RI+LS 
Sbjct: 340 NERISLSI 347



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 146/355 (41%), Gaps = 28/355 (7%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +++K G  V G+V  ++    IV   GG    + P+  +S   I  P    KVG E+   
Sbjct: 11  NEIKEGDKVTGEVQEIEEKQVIVHVNGGKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAY 70

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           V  V+      T    L K +L    SY    ++L         +T++ K G  V    G
Sbjct: 71  VTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV--G 128

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 529
            +GF P S +  D   E  S +  GQ++K ++    PA+ R+ LS   K     E     
Sbjct: 129 QRGFVPASLISTD-FIEDFSGFE-GQILKLKVEELDPANNRVILS--RKAVEALENAEKK 184

Query: 530 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
           D+L++    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 185 DELLESLNEGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVKSPEDVVAI 239

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
           G     ++  +D +S  + LS K +L +  + +  +   I+   V+ G V  +   G FV
Sbjct: 240 GDSVKVKIKSVDKDSERISLSIKDTLPSPFEAIKGE---INEGEVIEGTVVRLTNFGAFV 296

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
                + G    S+          +    G+ V   IL V+ E  RI+LS+K + 
Sbjct: 297 EIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVKILSVDPENERISLSIKATL 351



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 163/394 (41%), Gaps = 81/394 (20%)

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 150
           ++EG  +T  V+ IE+   I+H     F G +P + L+    +N    VK G  +   V 
Sbjct: 13  IKEGDKVTGEVQEIEEKQVIVHVNGGKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAYVT 72

Query: 151 -----------------RSIDRTRKVVYLSSDPD---TVSKCVTKDLKG-ISIDL----L 185
                            R ++  +   +L    D   T+   VT+ +KG + +D+     
Sbjct: 73  KVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDVGQRGF 132

Query: 186 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 245
           VP  ++ST             F+  F+G          F     K    +    N R++ 
Sbjct: 133 VPASLIST------------DFIEDFSG----------FEGQILKLKVEELDPANNRVIL 170

Query: 246 VDPTSRAVGLTLNPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 301
              + +AV    N      LL +      +  GD+  + KV R+    G  +DI      
Sbjct: 171 ---SRKAVEALENAEKKDELLES------LNEGDVI-EGKVARL-TNFGAFVDIGGVD-- 217

Query: 302 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLVFT 358
               V +S+++ E V+  E     G  V+V+I    +  E ++  I     S FE +   
Sbjct: 218 --GLVHVSELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDTLPSPFEAI--- 272

Query: 359 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
             ++  G V++G V+ + +FGA V+   GV+ L  +  +S   I  PG+  + G ++  +
Sbjct: 273 KGEINEGEVIEGTVVRLTNFGAFVEIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVK 332

Query: 419 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEAT 450
           +L V  +++RI+++ K TL      I+ S +E T
Sbjct: 333 ILSVDPENERISLSIKATLPDEN--IIESDSETT 364


>gi|294786795|ref|ZP_06752049.1| ribosomal protein S1 [Parascardovia denticolens F0305]
 gi|315226424|ref|ZP_07868212.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
            12538]
 gi|420237201|ref|ZP_14741672.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
 gi|294485628|gb|EFG33262.1| ribosomal protein S1 [Parascardovia denticolens F0305]
 gi|315120556|gb|EFT83688.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
            12538]
 gi|391879472|gb|EIT87978.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
          Length = 493

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 172/384 (44%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V K+D++  LL I       + ++   +     P ++ E      +G  +   
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDVTPEDVVE------VGDTI--E 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1144
             L + KE K  RL+L   +        D+        I E D +V G + + + G  GL+
Sbjct: 88   ALVVTKEDKEGRLILSKKRAQYERAWGDVEK------IKEADGVVEGTVIEAVKG--GLI 139

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V IG   +      E++ +    P  G               Q ++ K+LE+ +      
Sbjct: 140  VDIGLRGFLPASLVEMRRVRDLAPYIG---------------QKIQAKILELDKNRN--- 181

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            +V LS R  L+   S                   +  L    + +G + ++ + G F+ L
Sbjct: 182  NVVLSRREYLEETQSEVRETF-------------LSQLKKGQVREGTISSIVNFGAFVDL 228

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK +      + 
Sbjct: 229  G-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QED 282

Query: 1325 EINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  HV G IV G++ ++  +G+F+++++  + GL H+SEL+  HV+N ET+ + G
Sbjct: 283  PWQRFARTHVPGQIVRGKVTKIVQFGVFVSVDD-GIEGLIHISELANRHVENPETVVKPG 341

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            E + VK++ VD ++RRISL +K +
Sbjct: 342  ETIFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G V +G + ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQVREGTISSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +RI+++ K T          ++       I  G +TKI + G FV   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---IVRGKVTKIVQFGVFVSVDDGIEG 319

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL       P ++   G+ +  +++      RRI+LS 
Sbjct: 320 LIHISELANRHVENPETVVKPGETIFVKVIDVDLDRRRISLSL 362



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 146/374 (39%), Gaps = 44/374 (11%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +     P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDVTPEDVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 560
            ++  +++      R+ LS        +  D+ K+     GVV+     AV   +I    
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDVEKIKE-ADGVVEGTVIEAVKGGLIVDIG 143

Query: 561 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL- 618
            +G +P    A  +E   V       G +   ++L LD   +N++LS +  L  +  ++ 
Sbjct: 144 LRGFLP----ASLVEMRRVRDLAPYIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVR 199

Query: 619 PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 678
            +  S +    V  G + +I+  G FV  LG + G    S+         S+   VG  V
Sbjct: 200 ETFLSQLKKGQVREGTISSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 679 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 738
              +LDV+ +  RI+LSLK +        F + H                          
Sbjct: 259 TVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH-------------------------- 291

Query: 739 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAIL 791
           + G ++ GKV +   FGV VS ++   + G I   +LA   VE+       G  I   ++
Sbjct: 292 VPGQIVRGKVTKIVQFGVFVSVDDG--IEGLIHISELANRHVENPETVVKPGETIFVKVI 349

Query: 792 DVAKAERLVDLSLK 805
           DV    R + LSLK
Sbjct: 350 DVDLDRRRISLSLK 363



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 163/386 (42%), Gaps = 34/386 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S  + V P    +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDVTPEDVVEVGDTIEALVVTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDVEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    +K
Sbjct: 152 LVEMRRVRDLAP----YIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVRETFLSQLK 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  G +  +      V +   G   G I    L+  H++H +    V+K G +   +
Sbjct: 208 KGQVREGTISSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G FV     + 
Sbjct: 262 VLDVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVRGKVTKIVQFGVFVSVDDGIE 318

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 712
           G    S+  +    +       G+++   ++DV+ +  RI+LSLKQ+  S   AS   + 
Sbjct: 319 GLIHISELANRHVENPETVVKPGETIFVKVIDVDLDRRRISLSLKQANDSVDPASEDFDP 378

Query: 713 FLLEEKIAMLQSSKHNGSELKWVEGF 738
            L      M      NG+  K+ EGF
Sbjct: 379 ALY----GMPAEYDENGN-YKYPEGF 399



 Score = 40.4 bits (93), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  IV+G V  +   G F+ +   ++  + +S L++ +VE+PE     G+ +  +V+ V+
Sbjct: 293  PGQIVRGKVTKIVQFGVFVSVDDGIEGLIHISELANRHVENPETVVKPGETIFVKVIDVD 352

Query: 1304 PLSKRVEVTLKTSDSRTASQSE 1325
               +R+ ++LK ++      SE
Sbjct: 353  LDRRRISLSLKQANDSVDPASE 374


>gi|375096179|ref|ZP_09742444.1| ribosomal protein S1 [Saccharomonospora marina XMU15]
 gi|374656912|gb|EHR51745.1| ribosomal protein S1 [Saccharomonospora marina XMU15]
          Length = 497

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 180/392 (45%), Gaps = 60/392 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G AV   
Sbjct: 43   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDAVEAL 96

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 97   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKDKDEPVSGTVIEVVKG--GLIL 147

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 148  DIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNRN---N 189

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L+   + +G V ++ + G F+ L 
Sbjct: 190  VVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG 236

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q  
Sbjct: 237  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-- 293

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G 
Sbjct: 294  ---FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGT 349

Query: 1385 KVKVKILKVDKEKRRISLGMKSSY--FKNDAD 1414
            +V VK++ +D E+RRISL +K +   F +D+D
Sbjct: 350  EVMVKVIDIDLERRRISLSLKQANEGFTSDSD 381



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 145/362 (40%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 45  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKEDKE 104

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +    + ++L      VSG V  V    +++ +  +G+   ++     
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKDKDEPVSGTVIEVVKGGLILDIGLRGFLPASL----- 159

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 160 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKG 216

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 217 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 275

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 276 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 308

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  EE  +    I+     H ++    V+ G+ +   ++D+    R + LS
Sbjct: 309 TKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLS 368

Query: 804 LK 805
           LK
Sbjct: 369 LK 370



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 164/392 (41%), Gaps = 36/392 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKED 102

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKDKDEPV--SGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASFMQ 710
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    ++D+ F  
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQANEGFTSDSDFDP 384

Query: 711 EHFLL----EEKIAMLQSSKHNGSELKWVEGF 738
             + +    +E+   +     +    +W EG+
Sbjct: 385 TQYGMAAEYDEQGNYIYPEGFDPDTQEWQEGY 416


>gi|315655345|ref|ZP_07908245.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
 gi|315656742|ref|ZP_07909629.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
            35242]
 gi|315490285|gb|EFU79910.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
 gi|315492697|gb|EFU82301.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
            35242]
          Length = 489

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 187/405 (46%), Gaps = 58/405 (14%)

Query: 1011 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1064
            + +++IGS + L +E D +I     G  V+G V KVD +  LL I    K +  IL    
Sbjct: 13   VAINDIGSTEDLIKEIDKTIKYFNDGDLVSGTVVKVDRDEVLLDIG--YKTEGVILSREL 70

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
                  +      +G  +   VL   KE K  RL+L   +        DI     +    
Sbjct: 71   SIKHDVDPDAEVKVGDEIEALVL--QKEDKEGRLLLSKKRAQYERAWGDI-----EKVKQ 123

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            E  +V G + +++ G  GL++ IG   +      E++ +    P  G             
Sbjct: 124  EDGVVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLQPYIG------------- 168

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
              + ++ K++E+ +      +V LS R+ L+   S   ++ LST              L 
Sbjct: 169  --RQLETKIIELDKNRN---NVVLSRRAFLEQTQSEVRTTFLST--------------LQ 209

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
               + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+
Sbjct: 210  KGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVD 268

Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGL 1362
               +RV ++LK +      +      +  H +G IV G++ ++  +G+F+ +E+  + GL
Sbjct: 269  FDRERVSLSLKAT-----QEDPWQTFARTHKIGQIVPGKVTKLVPFGVFVRVED-GIEGL 322

Query: 1363 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             HVSEL+  HV+  E + + G+++ VK++ +D E+RRISL +K +
Sbjct: 323  VHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 367



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   V
Sbjct: 206 STLQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEV 264

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G
Sbjct: 265 LDVDFDRERVSLSLKATQEDPWQTFARTHKIGQ---IVPGKVTKLVPFGVFVRVEDGIEG 321

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL       P  +  +G  +  +++      RRI+LS 
Sbjct: 322 LVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSL 364



 Score = 47.4 bits (111), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 143/363 (39%), Gaps = 48/363 (13%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G + K+++    +      +G     EL +    +P +   VG  ++  ++      
Sbjct: 40  LVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKEDKE 99

Query: 514 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+   ++     
Sbjct: 100 GRLLLSKKRAQYERAWGDIEKVKQEDGVVTGTVIEVVKGGLIIDIGLRGFLPASLV---- 155

Query: 571 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNS 629
              +     ++  I    E  +++ LD   +N++LS +  L  +  ++ +   S +    
Sbjct: 156 --EMRRVRDLQPYIGRQLET-KIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQKGQ 212

Query: 630 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
           V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ + 
Sbjct: 213 VRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDR 271

Query: 690 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 749
            R++LSLK +       +F + H                           IG ++ GKV 
Sbjct: 272 ERVSLSLK-ATQEDPWQTFARTHK--------------------------IGQIVPGKVT 304

Query: 750 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDL 802
           +   FGV V  E+   + G +   +LA   VE        G  I   ++D+    R + L
Sbjct: 305 KLVPFGVFVRVEDG--IEGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISL 362

Query: 803 SLK 805
           SLK
Sbjct: 363 SLK 365



 Score = 43.9 bits (102), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + +     +S    V P  + KVG E+   VL  + 
Sbjct: 38  GDLVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKED 97

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLLLSKKRAQYERAWGDIEKVKQE-DGVVT-GTVIEVVKGGLIIDI--GLRGFLPAS 153

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQ 209

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGQEVTVE 263

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    +V G V  ++  G FVR    +
Sbjct: 264 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHKIGQIVPGKVTKLVPFGVFVRVEDGI 319

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   +G  +   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 367


>gi|298346799|ref|YP_003719486.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
 gi|304389496|ref|ZP_07371459.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
 gi|298236860|gb|ADI67992.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
 gi|304327306|gb|EFL94541.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
          Length = 489

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 187/405 (46%), Gaps = 58/405 (14%)

Query: 1011 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1064
            + +++IGS + L +E D +I     G  V+G V KVD +  LL I    K +  IL    
Sbjct: 13   VAINDIGSTEDLIKEIDKTIKYFNDGDLVSGTVVKVDRDEVLLDIG--YKTEGVILSREL 70

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
                  +      +G  +   VL   KE K  RL+L   +        DI     +    
Sbjct: 71   SIKHDVDPDAEVKVGDEIEALVL--QKEDKEGRLLLSKKRAQYERAWGDI-----EKVKQ 123

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            E  +V G + +++ G  GL++ IG   +      E++ +    P  G             
Sbjct: 124  EDGVVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLQPYIG------------- 168

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
              + ++ K++E+ +      +V LS R+ L+   S   ++ LST              L 
Sbjct: 169  --RQLETKIIELDKNRN---NVVLSRRAFLEQTQSEVRTTFLST--------------LQ 209

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
               + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+
Sbjct: 210  KGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVD 268

Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGL 1362
               +RV ++LK +      +      +  H +G IV G++ ++  +G+F+ +E+  + GL
Sbjct: 269  FDRERVSLSLKAT-----QEDPWQTFARTHKIGQIVPGKVTKLVPFGVFVRVED-GIEGL 322

Query: 1363 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             HVSEL+  HV+  E + + G+++ VK++ +D E+RRISL +K +
Sbjct: 323  VHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 367



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   V
Sbjct: 206 STLQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEV 264

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G
Sbjct: 265 LDVDFDRERVSLSLKATQEDPWQTFARTHKIGQ---IVPGKVTKLVPFGVFVRVEDGIEG 321

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL       P  +  +G  +  +++      RRI+LS 
Sbjct: 322 LVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSL 364



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 143/363 (39%), Gaps = 48/363 (13%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G + K+++    +      +G     EL +    +P +   VG  ++  ++      
Sbjct: 40  LVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKEDKE 99

Query: 514 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+   ++     
Sbjct: 100 GRLLLSKKRAQYERAWGDIEKVKQEDGVVTGTVIEVVKGGLIIDIGLRGFLPASLV---- 155

Query: 571 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNS 629
              +     ++  I    E  +++ LD   +N++LS +  L  +  ++ +   S +    
Sbjct: 156 --EMRRVRDLQPYIGRQLET-KIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQKGQ 212

Query: 630 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
           V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ + 
Sbjct: 213 VRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDR 271

Query: 690 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 749
            R++LSLK +       +F + H                           IG ++ GKV 
Sbjct: 272 ERVSLSLK-ATQEDPWQTFARTHK--------------------------IGQIVPGKVT 304

Query: 750 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDL 802
           +   FGV V  E+   + G +   +LA   VE        G  I   ++D+    R + L
Sbjct: 305 KLVPFGVFVRVEDG--IEGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISL 362

Query: 803 SLK 805
           SLK
Sbjct: 363 SLK 365



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + +     +S    V P  + KVG E+   VL  + 
Sbjct: 38  GDLVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKED 97

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLLLSKKRAQYERAWGDIEKVKQE-DGVVT-GTVIEVVKGGLIIDI--GLRGFLPAS 153

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQ 209

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGQEVTVE 263

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    +V G V  ++  G FVR    +
Sbjct: 264 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHKIGQIVPGKVTKLVPFGVFVRVEDGI 319

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   +G  +   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 367


>gi|269218432|ref|ZP_06162286.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211543|gb|EEZ77883.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 486

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 184/409 (44%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS+  L    D +I     G  + G V KVD++  LL +       + ++   +
Sbjct: 12   VAINDIGSEEDLIAAVDATIKYFNDGDIIEGTVVKVDHDEVLLDVGYKTEGVIPSKELSI 71

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                 P E+ E      +G  V   VL   KE K  RL+L   +         I      
Sbjct: 72   KHDINPDEVVE------VGDQVEALVL--QKEDKEGRLLLSKKRAQYERAWSQIEE---- 119

Query: 1121 TFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
              + E D +V G + +++ G  GL++ IG   +      E++ +    P  G +      
Sbjct: 120  --VKEADGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGRE------ 169

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                     ++ K++E+ +      +V LS RS L+   S    +  T+           
Sbjct: 170  ---------IEAKIIELDKNRN---NVVLSRRSWLEETQSQARGEFLTN----------- 206

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G + ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 207  --LKKGQVRDGVISSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEV 263

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E+  
Sbjct: 264  LDVDMDRERVSLSLKAT-----QEDPWQTFARTHGIGQIVPGKVTKLVPFGAFVRVED-G 317

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL++ HVD  E + + GE V VK++ +D E+RRISL +K +
Sbjct: 318  IEGLVHISELAQRHVDLPEQVVKVGEDVFVKVIDIDLERRRISLSLKQA 366



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           +++K G V  G + ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   V
Sbjct: 205 TNLKKGQVRDGVISSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEV 263

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G
Sbjct: 264 LDVDMDRERVSLSLKATQEDPWQTFARTHGIGQ---IVPGKVTKLVPFGAFVRVEDGIEG 320

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 321 LVHISELAQRHVDLPEQVVKVGEDVFVKVIDIDLERRRISLSL 363



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G + K++     +      +G  P  EL +     P  +  VG  V+  ++  
Sbjct: 35  NDGDIIEGTVVKVDHDEVLLDVGYKTEGVIPSKELSIKHDINPDEVVEVGDQVEALVLQK 94

Query: 510 IPASRRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 564
                R+ LS     +    +++ E  + +   +V+G V  V    +++ +  +G+    
Sbjct: 95  EDKEGRLLLSKKRAQYERAWSQIEE--VKEADGVVTGTVIEVVKGGLILDIGLRGF---- 148

Query: 565 IPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-A 622
           +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  Q   +  
Sbjct: 149 LP----ASLVEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRSWLEETQSQARGEFL 204

Query: 623 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
           +++    V  G + +I+  G FV  LG + G    S+         S+   VGQ V   +
Sbjct: 205 TNLKKGQVRDGVISSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEV 263

Query: 683 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 742
           LDV+ +  R++LSLK +       +F + H                           IG 
Sbjct: 264 LDVDMDRERVSLSLK-ATQEDPWQTFARTHG--------------------------IGQ 296

Query: 743 VIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAE 797
           ++ GKV +   FG  V  E+  +    I+     H  L    V+ G  +   ++D+    
Sbjct: 297 IVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVKVGEDVFVKVIDIDLER 356

Query: 798 RLVDLSLK 805
           R + LSLK
Sbjct: 357 RRISLSLK 364



 Score = 46.2 bits (108), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +++G V+ VD    ++      + + P   +S    + P +  +VG ++   VL  + 
Sbjct: 37  GDIIEGTVVKVDHDEVLLDVGYKTEGVIPSKELSIKHDINPDEVVEVGDQVEALVLQKED 96

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +   + +    EA D ++T G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLLLSKKRAQYERAWSQIEEVKEA-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      +K
Sbjct: 153 LVEMRRVRDLQP----YIGREIEAKIIELDKNRNNVVLSRRSWLEETQSQARGEFLTNLK 208

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GV+  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 209 KGQVRDGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVTVE 262

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    +V G V  ++  G FVR    +
Sbjct: 263 VLDVDMDRERVSLSLKATQEDPWQTF----ARTHGIGQIVPGKVTKLVPFGAFVRVEDGI 318

Query: 652 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+    +  DL  +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 319 EGLVHISELAQ-RHVDLPEQVVKVGEDVFVKVIDIDLERRRISLSLKQA 366


>gi|294055034|ref|YP_003548692.1| 30S ribosomal protein S1 [Coraliomargarita akajimensis DSM 45221]
 gi|293614367|gb|ADE54522.1| ribosomal protein S1 [Coraliomargarita akajimensis DSM 45221]
          Length = 552

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 98/163 (60%), Gaps = 6/163 (3%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V+G V+N+T+ G F+ L   +D  V +S++S    V  P +    G  V   VL V+  S
Sbjct: 362  VRGKVRNLTTYGAFVELEEGIDGMVHVSDMSWTRKVNHPSEVVKKGDEVDAIVLDVDADS 421

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ + +K        + E    ++  +GD+V G++ ++ SYG F+ ++N ++ GL H+S
Sbjct: 422  QRISLGMKQLAVDPWDEIE----THFKIGDMVKGKVSKITSYGAFVELDN-DIDGLVHIS 476

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
            ++SE+ V+ I+ +  +G +V  +++K+DK++RRI L +K++ +
Sbjct: 477  QISEERVEKIKDVLDSGAEVTARVIKIDKDERRIGLSIKAANY 519



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 191/468 (40%), Gaps = 78/468 (16%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRV--L 420
           G +++G+V +    G IV    GV +  P   +     ++P K     VG    F+V  +
Sbjct: 101 GSIIQGRVRSKVKGGLIVSI--GVDSFLPASQID----IQPPKNLDQYVGQTYDFKVVKI 154

Query: 421 GVKSKRITVTHKKTLVKSKL----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            ++ K I V+ ++ + + ++    A+L        R    G +  I  +G FV   +G+ 
Sbjct: 155 NLERKNIVVSRRELIEEQRMEKRRALLEEVKPGDKR---RGQVKNITDYGAFVDL-DGLD 210

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVK 534
           G    +++       PS M   G+ ++  I+       R++L          E  ++   
Sbjct: 211 GLLHITDMSWGRIQHPSEMVKQGEEIEVVIIEIDRDRERVSLGLKQLADNPWERIEEKYP 270

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
           + S ++G V  + P    V  I +G        E L  H+   +  K + KPG    ++L
Sbjct: 271 ISSTITGKVVNLVPYGAFVE-IEEG-------VEGLV-HVTELSWTKRISKPG----EVL 317

Query: 595 VLDNESSNLLLS-----AKYSL-INSAQQLPSD-ASHIHP-NSVVHGYVCNIIETGCFVR 646
            +  E   ++L       K SL +      P D A H +P  + V G V N+   G FV 
Sbjct: 318 RIGEEIQAVVLGIQKEEQKISLGVRQLDANPWDMARHNYPVGARVRGKVRNLTTYGAFVE 377

Query: 647 FLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
               + G    S     ++ +  S+    G  V + +LDV++++ RI+L +KQ      D
Sbjct: 378 LEEGIDGMVHVSDMSWTRKVNHPSEVVKKGDEVDAIVLDVDADSQRISLGMKQLAVDPWD 437

Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
              ++ HF                          IG +++GKV +   +G  V  +  +D
Sbjct: 438 E--IETHFK-------------------------IGDMVKGKVSKITSYGAFVELD--ND 468

Query: 766 VYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKT 806
           + G +   Q++   VE       SG+ + A ++ + K ER + LS+K 
Sbjct: 469 IDGLVHISQISEERVEKIKDVLDSGAEVTARVIKIDKDERRIGLSIKA 516



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 87/168 (51%), Gaps = 7/168 (4%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +E++ P    +G VKN+T  G F+ L   LD  + ++++S G ++ P +    G+ +   
Sbjct: 181  LEEVKPGDKRRGQVKNITDYGAFVDLD-GLDGLLHITDMSWGRIQHPSEMVKQGEEIEVV 239

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            ++ ++   +RV + LK        + E        +   + G++  +  YG F+ IE   
Sbjct: 240  IIEIDRDRERVSLGLKQLADNPWERIE----EKYPISSTITGKVVNLVPYGAFVEIEE-G 294

Query: 1359 LVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + GL HV+ELS    +     + R GE+++  +L + KE+++ISLG++
Sbjct: 295  VEGLVHVTELSWTKRISKPGEVLRIGEEIQAVVLGIQKEEQKISLGVR 342


>gi|23336678|ref|ZP_00121881.1| COG0539: Ribosomal protein S1 [Bifidobacterium longum DJO10A]
          Length = 484

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 181/403 (44%), Gaps = 66/403 (16%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1119 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G      
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q +K K+LE+ +      +V LS R  L+   S                  
Sbjct: 167  ---------QKIKAKILELDKN---RNNVVLSRRQYLEETQSEVRETF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V  
Sbjct: 203  -LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+
Sbjct: 261  EVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1399
              + GL H+SEL+  HV+N ET+ + GE V VK++ VD ++RR
Sbjct: 316  -GIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRR 357



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 6/119 (5%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN--LSNLHVGDIVIGQIKRVESY 1348
            IG+ +  ++L ++    R  V L        +QSE+    LS L  G I  G +  + ++
Sbjct: 165  IGQKIKAKILELD--KNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNF 222

Query: 1349 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            G F+ +   +  GL HVSELS  H+D+   + + G+KV V++L VD ++ RISL +K++
Sbjct: 223  GAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT 279



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 135/344 (39%), Gaps = 37/344 (10%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 560
            ++  +++      R+ LS        +  D+ K+     GVV+     AV   +I    
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKE-ADGVVEGTVIEAVKGGLIVDIG 143

Query: 561 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLP 619
            +G +P    A  +E   V       G +   ++L LD   +N++LS +  L  +  ++ 
Sbjct: 144 LRGFLP----ASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVR 199

Query: 620 SD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 678
               S +    +  G V +I+  G FV  LG + G    S+         S+   VG  V
Sbjct: 200 ETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 679 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 738
              +LDV+ +  RI+LSLK +        F + H                          
Sbjct: 259 TVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH-------------------------- 291

Query: 739 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 782
           + G +++GKV +   FGV +S E+   + G +   +LA   VE+
Sbjct: 292 VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVEN 333



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +RI+++ K T          ++       I  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---IVKGKVTKIVQFGVFISVEDGIEG 319

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515
               SEL       P ++   G+ V  +++      RR
Sbjct: 320 LVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRR 357


>gi|296269456|ref|YP_003652088.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM
            43833]
 gi|296092243|gb|ADG88195.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833]
          Length = 480

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 188/408 (46%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS+  F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPAEV------VKVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+    T S    T ++T         
Sbjct: 172  --------LEAKIIELDKN---RNNVVLSRRAWLE---QTQSEVRQTFLNT--------- 208

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 209  -LQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 266

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ +E   +
Sbjct: 267  DVDMERERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGRVTKLVPFGAFVRVEE-GI 320

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HV+  E + + G+++ VKI+ +D E+RRISL +K +
Sbjct: 321  EGLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQA 368



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 151/347 (43%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  KVG  +   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVKVGDHVEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D E   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMERERVSLSLKATQEDPWQQF---ARTHQIGQVVPGRVTKLVPFGAFVRVEEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   VG  +   I+D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQA 368


>gi|227875377|ref|ZP_03993518.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243]
 gi|269977367|ref|ZP_06184340.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1]
 gi|306818692|ref|ZP_07452414.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239]
 gi|307700853|ref|ZP_07637878.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16]
 gi|227843931|gb|EEJ54099.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243]
 gi|269934670|gb|EEZ91231.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1]
 gi|304648378|gb|EFM45681.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239]
 gi|307613848|gb|EFN93092.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16]
          Length = 489

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 187/406 (46%), Gaps = 60/406 (14%)

Query: 1011 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1064
            + +++IGS + L +E D +I     G  VTG V KVD +  LL I    K +  IL    
Sbjct: 12   VAINDIGSTEDLLKEIDKTIKYFNDGDLVTGTVVKVDRDEVLLDIG--YKTEGVILSREL 69

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
                  +      +G  +   VL   KE K  RL+L   +        D+        I 
Sbjct: 70   SIKHDVDPDEEVKVGDEIEALVL--QKEDKEGRLLLSKKRAQYERAWGDVEK------IK 121

Query: 1125 EGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
            E D +V G + +++ G  GL++ IG   +      E++ +    P  G            
Sbjct: 122  EADGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG------------ 167

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
               + ++ K++E+ +      +V LS R+ L+   S   ++ LST              L
Sbjct: 168  ---RQLETKIIELDKNRN---NVVLSRRAFLEQTQSEVRTTFLST--------------L 207

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V
Sbjct: 208  QKGQVRTGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDV 266

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVG 1361
            +   +RV ++LK +      +      +  H +G IV G++ ++  +G+F+ +E+  + G
Sbjct: 267  DFDRERVSLSLKAT-----QEDPWQTFARTHKIGQIVPGKVTKLVPFGVFVRVED-GIEG 320

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L HVSEL+  H++  E + + G+++ VK++ +D E+RRISL +K +
Sbjct: 321  LVHVSELATRHIEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 366



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 110/258 (42%), Gaps = 18/258 (6%)

Query: 282 VVRVDRGLGLLLDIP---STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 338
           V+ V +G GL+LDI      P S      + D+A    R+LE K  E    R  ++  R 
Sbjct: 131 VIEVVKG-GLILDIGLRGFLPASLVEMRRVRDLAPYIGRQLETKIIELDKNRNNVVLSRR 189

Query: 339 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 398
                   L+ +  E      S ++ G V  G V ++ +FGA V   GGV  L  +  +S
Sbjct: 190 ------AFLEQTQSEVRTTFLSTLQKGQVRTGVVSSIVNFGAFVDL-GGVDGLVHVSELS 242

Query: 399 EFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH 456
              I  P +  +VG E+   VL V    +R++++ K T          ++       I  
Sbjct: 243 WKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQTFARTHKIGQ---IVP 299

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
           G +TK+   G FVR  +G++G    SEL       P  +  +G  +  +++      RRI
Sbjct: 300 GKVTKLVPFGVFVRVEDGIEGLVHVSELATRHIEVPEQVAKIGDEIFVKVIDIDLERRRI 359

Query: 517 NLSFMM--KPTRVSEDDL 532
           +LS     +   VS DD 
Sbjct: 360 SLSLKQANEGVDVSSDDF 377



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + +     +S    V P ++ KVG E+   VL  + 
Sbjct: 37  GDLVTGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDEEVKVGDEIEALVLQKED 96

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    EA D ++T G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLLLSKKRAQYERAWGDVEKIKEA-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 153 LVEMRRVRDLAP----YIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQ 208

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 209 KGQVRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGQEVTVE 262

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    +V G V  ++  G FVR    +
Sbjct: 263 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHKIGQIVPGKVTKLVPFGVFVRVEDGI 318

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   +G  +   ++D++ E  RI+LSLKQ+
Sbjct: 319 EGLVHVSELATRHIEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 366



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 146/365 (40%), Gaps = 51/365 (13%)

Query: 453 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 512
           L+T G + K+++    +      +G     EL +    +P     VG  ++  ++     
Sbjct: 39  LVT-GTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDEEVKVGDEIEALVLQKEDK 97

Query: 513 SRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 569
             R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P   
Sbjct: 98  EGRLLLSKKRAQYERAWGDVEKIKEADGVVTGTVIEVVKGGLILDIGLRGF----LP--- 150

Query: 570 LADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHP 627
            A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ +   S +  
Sbjct: 151 -ASLVEMRRVRDLAPYIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQK 209

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ 
Sbjct: 210 GQVRTGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDF 268

Query: 688 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 747
           +  R++LSLK +       +F + H                           IG ++ GK
Sbjct: 269 DRERVSLSLK-ATQEDPWQTFARTH--------------------------KIGQIVPGK 301

Query: 748 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLV 800
           V +   FGV V  E+   + G +   +LA   +E        G  I   ++D+    R +
Sbjct: 302 VTKLVPFGVFVRVEDG--IEGLVHVSELATRHIEVPEQVAKIGDEIFVKVIDIDLERRRI 359

Query: 801 DLSLK 805
            LSLK
Sbjct: 360 SLSLK 364


>gi|284031037|ref|YP_003380968.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM
            17836]
 gi|283810330|gb|ADB32169.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836]
          Length = 492

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS+  F    D++I     G  V G + KVD +  LL I       + ++   +
Sbjct: 19   VAVNDIGSEEDFLAAIDLTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 78

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+       ++G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 79   KHDVDPNEV------VNVGDHVEALVL--QKEDKEGRLILSKKR-----AQYEKAWGTIE 125

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 126  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVG--------- 174

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S    +  T             
Sbjct: 175  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRMNFLTQ------------ 213

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 214  -LQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPTEVVEVGQEVTVEVL 271

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 272  DVDMDRERVSLSLKATQEDPWQQ-----FARTHQMGQIVPGKVTKLVPFGAFVRVEE-GI 325

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HV+  E + +  + V VKI+ +D E+RRISL +K +
Sbjct: 326  EGLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQA 373



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 44  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDHVEALVLQKED 103

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 104 KEGRLILSKKRAQYEKAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 159

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R++    ++
Sbjct: 160 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRMNFLTQLQ 215

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H T    V++ G E   +
Sbjct: 216 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPT---EVVEVGQEVTVE 269

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       +V G V  ++  G FVR    + 
Sbjct: 270 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQMGQIVPGKVTKLVPFGAFVRVEEGIE 326

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   V   I+D++ E  RI+LSLKQ+
Sbjct: 327 GLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQA 373


>gi|196231335|ref|ZP_03130194.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428]
 gi|196224671|gb|EDY19182.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428]
          Length = 566

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 98/163 (60%), Gaps = 6/163 (3%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V+G V+N+T+ G F+ L   +D  + +S++S    V  P +    G  +   V+ ++  +
Sbjct: 364  VKGTVRNLTAYGAFVELEEGIDGMIHVSDMSWTKKVNHPSEVLKKGDEIEAVVIDIDKQN 423

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ + +K  +     + E    +   +GD+V G++ ++ ++G FI++E  ++ GL H+S
Sbjct: 424  QRISLGIKQLEGDPWKEIE----NKYKIGDLVKGKVSKITTFGAFISLEG-DIDGLIHIS 478

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
            ++SED VD I+   + G++V+ +++KVDK +RRI L +K++ +
Sbjct: 479  QISEDRVDKIKDHLKVGQEVEARVIKVDKTERRIGLSLKAANY 521



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 151/364 (41%), Gaps = 44/364 (12%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K G  VKG V  +  FGA +   G +  L  +  M+   +  P +  KVG EL   VL 
Sbjct: 186 IKVGSTVKGVVKNLTDFGAFIDLDG-MDGLLHITDMTWGRLGHPSELVKVGQELDVIVLD 244

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGV 475
           +  + +R+++  K+T         + + E  +R        G IT +  +G FV    GV
Sbjct: 245 INKEKERVSLGLKQTQ-------KNPWEETENRFPVGSKVKGKITNLVPYGAFVEIEEGV 297

Query: 476 QGFAPRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDL 532
           +G    SEL        PS +  VGQ V+  ++      ++I+L    ++P    E +  
Sbjct: 298 EGLIHVSELSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQKISLGVRQLEPNPWDEIEHR 357

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 587
            ++G  V G V  +T     V +      +G     H++D      + H +    V+K G
Sbjct: 358 YQIGRQVKGTVRNLTAYGAFVEL-----EEGIDGMIHVSDMSWTKKVNHPS---EVLKKG 409

Query: 588 YEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-----SVVHGYVCNIIET 641
            E + +++ +D ++  + L  K        QL  D      N      +V G V  I   
Sbjct: 410 DEIEAVVIDIDKQNQRISLGIK--------QLEGDPWKEIENKYKIGDLVKGKVSKITTF 461

Query: 642 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701
           G F+   G + G    S+  + +   +     VGQ V + ++ V+    RI LSLK +  
Sbjct: 462 GAFISLEGDIDGLIHISQISEDRVDKIKDHLKVGQEVEARVIKVDKTERRIGLSLKAANY 521

Query: 702 SSTD 705
           S  D
Sbjct: 522 SEED 525



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 7/159 (4%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V+G VKN+T  G FI L   +D  + +++++ G +  P +   +G+ +   VL +    +
Sbjct: 192  VKGVVKNLTDFGAFIDLD-GMDGLLHITDMTWGRLGHPSELVKVGQELDVIVLDINKEKE 250

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
            RV + LK +      ++E    +   VG  V G+I  +  YG F+ IE   + GL HVSE
Sbjct: 251  RVSLGLKQTQKNPWEETE----NRFPVGSKVKGKITNLVPYGAFVEIEE-GVEGLIHVSE 305

Query: 1368 LS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            LS    +     +   G++V+  +L V+KE+++ISLG++
Sbjct: 306  LSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQKISLGVR 344



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 111/475 (23%), Positives = 190/475 (40%), Gaps = 77/475 (16%)

Query: 363 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
           K G +VKG++I V     +V    G K+   +  +SEF+        ++G E+   +L +
Sbjct: 20  KEGQIVKGRIIEVRPREVLVDI--GYKSEGAV-SLSEFD---DADDIQIGDEVEVLILRL 73

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEAT-----DRLITHGWITKIEKHGCFVRFYNGVQG 477
           +++  +V     L K K A   ++ +       D LI  G +  + K G  V    GV+ 
Sbjct: 74  ENEEGSVI----LSKEKAAYRQNWEKIVKVFQGDGLI-KGKVKAVVKGGLTVNI--GVEA 126

Query: 478 FAPRSELGLDPGCEPSSMYH-VGQVVKCRIMS------SIPASRRINLSFMMKPTRVSED 530
           F P S++ + P   P  +   VG     +I+       ++  SRR  +       R    
Sbjct: 127 FLPGSQIDIVP---PKDLQQFVGNTYDFKIVKINDDRKNVVLSRRELIEAERAEKRQRFM 183

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 590
           D +K+GS V GVV  +T      ++   G       T+     L H +    ++K G E 
Sbjct: 184 DTIKVGSTVKGVVKNLTDFG--AFIDLDGMDGLLHITDMTWGRLGHPS---ELVKVGQEL 238

Query: 591 DQLLVLD--NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 648
           D ++VLD   E   + L  K +  N  ++     +     S V G + N++  G FV   
Sbjct: 239 D-VIVLDINKEKERVSLGLKQTQKNPWEET---ENRFPVGSKVKGKITNLVPYGAFVEIE 294

Query: 649 GRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
             + G    S+    +R    S    VGQ V + +L VN E  +I+L ++Q   +  D  
Sbjct: 295 EGVEGLIHVSELSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQKISLGVRQLEPNPWDEI 354

Query: 708 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 767
              EH                         + IG  ++G V     +G  V  EE  D  
Sbjct: 355 ---EHR------------------------YQIGRQVKGTVRNLTAYGAFVELEEGID-- 385

Query: 768 GFITHHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
           G I    ++           ++ G  I+A ++D+ K  + + L +K +  D ++E
Sbjct: 386 GMIHVSDMSWTKKVNHPSEVLKKGDEIEAVVIDIDKQNQRISLGIKQLEGDPWKE 440


>gi|374709444|ref|ZP_09713878.1| 30S ribosomal protein S1 [Sporolactobacillus inulinus CASD]
          Length = 384

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 183/390 (46%), Gaps = 70/390 (17%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
            +++G  V G V KV+ + AL+ +        + +D     SEL       H+ K     V
Sbjct: 15   LNVGTVVNGKVTKVEEKHALVDVG-------YKVDGILPISELS----SLHVEK-----V 58

Query: 1087 LSINKEKKLLRLVLRPFQDG---ISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSGVG 1141
              + KE   + + +   +D    +S + VD  ++ D+++   +        I+ ++ G  
Sbjct: 59   ADLLKEGDEISVKVTKLEDDELVLSKREVDADLAWDDLEDKFNNKTTFSVEIADVVKG-- 116

Query: 1142 GLVVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
            GLVV +G     P      HF E                     S Y +G+ +  K++E+
Sbjct: 117  GLVVDLGVRGFIPASLVERHFVE-------------------DFSDY-KGKPLDVKIVEL 156

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
             R  R      LS R+ LD ++               K  E +E +    +++G V+ +T
Sbjct: 157  DREKRKVI---LSHRAVLDEVADK-------------KKTETLESIQEGSVLEGTVQRLT 200

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
              G F+ +   +D  V +S L+  +VE+P +    G  V  +VL+V+P ++R+ +++K +
Sbjct: 201  DFGVFVDIG-GVDGLVHISQLAHYHVETPSEVVAEGDHVKVKVLAVDPENERISLSIKAT 259

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
                   ++    S ++VGD++ G +KR+  +G F+ +    + GL H+SE+S +H+   
Sbjct: 260  QPGPWETAK----SKINVGDVLEGTVKRLVPFGAFVEL-LPGVEGLVHISEISHEHIGTP 314

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            E +    +K+KVK+L V+ +++R+SL +K+
Sbjct: 315  EEVLTENQKIKVKVLDVNFDEQRVSLSIKA 344



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 66/116 (56%), Gaps = 2/116 (1%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
            GK +  +++ ++   ++V ++ +      A + +   L ++  G ++ G ++R+  +G+F
Sbjct: 146  GKPLDVKIVELDREKRKVILSHRAVLDEVADKKKTETLESIQEGSVLEGTVQRLTDFGVF 205

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + I   +  GL H+S+L+  HV+    +   G+ VKVK+L VD E  RISL +K++
Sbjct: 206  VDIGGVD--GLVHISQLAHYHVETPSEVVAEGDHVKVKVLAVDPENERISLSIKAT 259



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 25/342 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G VV GKV  V+   A+V     V  + P+  +S   + K     K G E+  +V  ++ 
Sbjct: 18  GTVVNGKVTKVEEKHALVDVGYKVDGILPISELSSLHVEKVADLLKEGDEISVKVTKLED 77

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
             + ++ ++  V + LA      +  ++      I  + K G  V    GV+GF P S L
Sbjct: 78  DELVLSKRE--VDADLAWDDLEDKFNNKTTFSVEIADVVKGGLVVDL--GVRGFIPAS-L 132

Query: 485 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED------DLVKLGSL 538
                 E  S Y  G+ +  +I+      R++ LS       V++       + ++ GS+
Sbjct: 133 VERHFVEDFSDYK-GKPLDVKIVELDREKRKVILSHRAVLDEVADKKKTETLESIQEGSV 191

Query: 539 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 597
           + G V  +T   V V +   G   G +    LA +  H      V+  G     ++L +D
Sbjct: 192 LEGTVQRLTDFGVFVDI---GGVDGLVHISQLAHY--HVETPSEVVAEGDHVKVKVLAVD 246

Query: 598 NESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 655
            E+  + LS     I + Q  P +   S I+   V+ G V  ++  G FV  L  + G  
Sbjct: 247 PENERISLS-----IKATQPGPWETAKSKINVGDVLEGTVKRLVPFGAFVELLPGVEGLV 301

Query: 656 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
             S+          +     Q ++  +LDVN +  R++LS+K
Sbjct: 302 HISEISHEHIGTPEEVLTENQKIKVKVLDVNFDEQRVSLSIK 343



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 18/171 (10%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           T   ++ G V++G V  +  FG  V   GGV  L  +  ++ + +  P +    G  +  
Sbjct: 182 TLESIQEGSVLEGTVQRLTDFGVFVDI-GGVDGLVHISQLAHYHVETPSEVVAEGDHVKV 240

Query: 418 RVLGV--KSKRITVTHKKT------LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 469
           +VL V  +++RI+++ K T        KSK+ +           +  G + ++   G FV
Sbjct: 241 KVLAVDPENERISLSIKATQPGPWETAKSKINVGD---------VLEGTVKRLVPFGAFV 291

Query: 470 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               GV+G    SE+  +    P  +    Q +K +++      +R++LS 
Sbjct: 292 ELLPGVEGLVHISEISHEHIGTPEEVLTENQKIKVKVLDVNFDEQRVSLSI 342


>gi|225164097|ref|ZP_03726379.1| ribosomal protein S1 [Diplosphaera colitermitum TAV2]
 gi|224801303|gb|EEG19617.1| ribosomal protein S1 [Diplosphaera colitermitum TAV2]
          Length = 555

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 107/182 (58%), Gaps = 10/182 (5%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V G V+N+T+ G FI L   +D  V +S++S    V  P +    G  V   VL V+P  
Sbjct: 360  VHGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQ 419

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ + +K         S+I++     +GD+V G + ++ S+G F+ +++  + GL H+S
Sbjct: 420  QRISLGMKQL--AVDPWSDIDSF--FKIGDVVKGTVTKITSFGAFVDLKD-GIDGLVHIS 474

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1426
            ++SE+ ++ ++ + + G++V  +++K+D+++RR+ L +K++ +  +    Q++SE  + E
Sbjct: 475  QISEERIEKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYSPE----QLASETAAYE 530

Query: 1427 AI 1428
            A+
Sbjct: 531  AL 532



 Score = 70.5 bits (171), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 44/292 (15%)

Query: 1117 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1176
            +N+ T   EG +  GR+   + G  GL++ IG   +               P S  D   
Sbjct: 90   ENILTKFPEGSVAVGRVKAKVKG--GLIISIGVDAFM--------------PASHID--- 130

Query: 1177 FDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
              P    D+  GQ    KVL+I++  +   ++ LS R  ++   S    +L         
Sbjct: 131  IQPPKNLDQYVGQTYDFKVLKINQERK---NIVLSRRELIEQQRSEKRRNL--------- 178

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +E + P  + +G VKN+T  G FI L   +D  + ++++S G +  P +    G+ 
Sbjct: 179  ----LESIQPGQVRKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRIAHPSEMLKQGEE 233

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            +   ++ V    +RV + LK +      + E        VG  + G++  +  YG FI I
Sbjct: 234  IQVMIIEVNRDKERVSLGLKQTTKNPWDEIE----QKFPVGTKIHGKVVNLVPYGAFIEI 289

Query: 1355 ENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            E   + GL H++E+S    ++    + R G+++   +L + KE ++ISLG++
Sbjct: 290  E-PGVEGLVHITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLR 340



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 147/359 (40%), Gaps = 40/359 (11%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++PG V KG V  +  FGA +    G+  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 182 IQPGQVRKGVVKNITDFGAFIDL-DGMDGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIE 240

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R+++  K+T       I   +   T     HG +  +  +G F+    GV+G  
Sbjct: 241 VNRDKERVSLGLKQTTKNPWDEIEQKFPVGTK---IHGKVVNLVPYGAFIEIEPGVEGLV 297

Query: 480 PRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK--- 534
             +E+       +PS M  VGQ +   ++      ++I+L    ++P      D+V+   
Sbjct: 298 HITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPW---DMVRHNY 354

Query: 535 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 588
            +G+ V G V  +T     + +      +G     H++D      + H +    V+K G 
Sbjct: 355 PIGARVHGKVRNMTTYGAFIEL-----EEGIDGMVHVSDMSWTRKVNHPS---EVLKKGD 406

Query: 589 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGC 643
           E D + VLD + S   +S         +QL  D      S      VV G V  I   G 
Sbjct: 407 EVDAI-VLDVDPSQQRISL------GMKQLAVDPWSDIDSFFKIGDVVKGTVTKITSFGA 459

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           FV     + G    S+  + +   +      GQ V + ++ ++ +  R+ LS+K +  S
Sbjct: 460 FVDLKDGIDGLVHISQISEERIEKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYS 518



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 123/567 (21%), Positives = 226/567 (39%), Gaps = 91/567 (16%)

Query: 442 ILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG-CEPSSMY 496
           +L+    A D+L    I  G IT+I ++   V      +G  P +E  +D G  +  S  
Sbjct: 4   LLAQEPAAFDKLKEGQIVSGVITEIRQNEVVVDIGGKSEGVIPANEF-IDIGELQIGSTI 62

Query: 497 HVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVV 553
            V  V K    + +P      LSF   +  +  E+ L K   GS+  G V       +++
Sbjct: 63  EV-YVEKLEDKNGLPV-----LSFDKAEQKKNWENILTKFPEGSVAVGRVKAKVKGGLII 116

Query: 554 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 613
            +    +    +P  H+   ++    +   +   Y+F ++L ++ E  N++LS +  LI 
Sbjct: 117 SIGVDAF----MPASHI--DIQPPKNLDQYVGQTYDF-KVLKINQERKNIVLS-RRELIE 168

Query: 614 S--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 671
              +++  +    I P  V  G V NI + G F+   G + G    +    G+ A  S+ 
Sbjct: 169 QQRSEKRRNLLESIQPGQVRKGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRIAHPSEM 227

Query: 672 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 731
              G+ ++  I++VN +  R++L LKQ+  +  D         +E+K             
Sbjct: 228 LKQGEEIQVMIIEVNRDKERVSLGLKQTTKNPWDE--------IEQK------------- 266

Query: 732 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA------GATVESGSV 785
                 F +G+ I GKV     +G  +  E   +    IT              +  G  
Sbjct: 267 ------FPVGTKIHGKVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRINKPSEMLRVGQE 320

Query: 786 IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 845
           + A +L + K ++ + L L+ +  + +     N     +           VH  V  +  
Sbjct: 321 LDAVVLGIQKEDQKISLGLRQLEPNPWDMVRHNYPIGAR-----------VHGKVRNMT- 368

Query: 846 IVKENYLVLSLPEYNHSI-GYASVSDYN-TQKF--PQKQFLNGQSVIATVMALPSSSTAG 901
                    +  E    I G   VSD + T+K   P +    G  V A V+ +  S    
Sbjct: 369 ------TYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQ-- 420

Query: 902 RLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 961
           R+ L +K ++    S        S + +G +V+  +T+I      +    G  G +HI++
Sbjct: 421 RISLGMKQLAVDPWSDI-----DSFFKIGDVVKGTVTKITSFGAFVDLKDGIDGLVHISQ 475

Query: 962 VNDDKSNVVENLFSNFKIGQTVTARII 988
           +++++   +E +    K GQ VTAR+I
Sbjct: 476 ISEER---IEKVKDVLKPGQEVTARVI 499



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 71/127 (55%), Gaps = 3/127 (2%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            +G+    +VL +    K + ++ +    +  S+   N L ++  G +  G +K +  +G 
Sbjct: 141  VGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLLESIQPGQVRKGVVKNITDFGA 200

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
            FI ++  +  GL H++++S   + +   + + GE+++V I++V+++K R+SLG+K +  K
Sbjct: 201  FIDLDGMD--GLLHITDMSWGRIAHPSEMLKQGEEIQVMIIEVNRDKERVSLGLKQTT-K 257

Query: 1411 NDADNLQ 1417
            N  D ++
Sbjct: 258  NPWDEIE 264



 Score = 48.1 bits (113), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 88/471 (18%), Positives = 182/471 (38%), Gaps = 61/471 (12%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K G +V G +  +     +V   G  + + P     +   ++ G   +V  E +    G
Sbjct: 15  LKEGQIVSGVITEIRQNEVVVDIGGKSEGVIPANEFIDIGELQIGSTIEVYVEKLEDKNG 74

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           +         +K   K+   IL+ + E +   +  G +    K G  +    GV  F P 
Sbjct: 75  LPVLSFDKAEQK---KNWENILTKFPEGS---VAVGRVKAKVKGGLIISI--GVDAFMPA 126

Query: 482 SELGLDPGCEPSSM-YHVGQVVKCRIMS------SIPASRRINLSFMMKPTRVSEDDLVK 534
           S + + P   P ++  +VGQ    +++       +I  SRR  +       R +  + ++
Sbjct: 127 SHIDIQP---PKNLDQYVGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLLESIQ 183

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
            G +  GVV  +T      ++   G       T+     + H + M   +K G E   ++
Sbjct: 184 PGQVRKGVVKNITDFGA--FIDLDGMDGLLHITDMSWGRIAHPSEM---LKQGEEIQVMI 238

Query: 595 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
           + ++ +   + L  K +  N   ++          + +HG V N++  G F+     + G
Sbjct: 239 IEVNRDKERVSLGLKQTTKNPWDEI---EQKFPVGTKIHGKVVNLVPYGAFIEIEPGVEG 295

Query: 654 FAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 712
               ++    +R +  S+   VGQ + + +L +  E  +I+L L+Q   +  D       
Sbjct: 296 LVHITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPWDMV----- 350

Query: 713 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 772
                        +HN         + IG+ + GKV     +G  +  EE  D    ++ 
Sbjct: 351 -------------RHN---------YPIGARVHGKVRNMTTYGAFIELEEGIDGMVHVSD 388

Query: 773 HQLA------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 817
                        ++ G  + A +LDV  +++ + L +K + +D + + +S
Sbjct: 389 MSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQRISLGMKQLAVDPWSDIDS 439



 Score = 41.2 bits (95), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 156/385 (40%), Gaps = 39/385 (10%)

Query: 54  HVGQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 112
           +VGQ     VL+++ ++K I   R+  +  + S   + L LE++Q G V    VK+I D 
Sbjct: 140 YVGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNL-LESIQPGQVRKGVVKNITDF 198

Query: 113 GYILHF----GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
           G  +      GL   T  +    +A  S + +K G  +Q ++  ++R ++ V L      
Sbjct: 199 GAFIDLDGMDGLLHITD-MSWGRIAHPSEM-LKQGEEIQVMIIEVNRDKERVSLGL---- 252

Query: 169 VSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 227
             K  TK+     I+   P G  +  +V +++  G  +       G V I  +  T    
Sbjct: 253 --KQTTKN-PWDEIEQKFPVGTKIHGKVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRIN 309

Query: 228 NWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPP----SHVKVGDIYD 278
                    ++++A +L +    + + L L     NP+ +     P     H KV ++  
Sbjct: 310 KPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPWDMVRHNYPIGARVHGKVRNMTT 369

Query: 279 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGFR 337
               + ++ G+                V +SD++   +V    +  K+G  V   +L   
Sbjct: 370 YGAFIELEEGID-------------GMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVD 416

Query: 338 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 397
             +   +  +K  A +      S  K G VVKG V  + SFGA V    G+  L  +  +
Sbjct: 417 PSQQRISLGMKQLAVDPWSDIDSFFKIGDVVKGTVTKITSFGAFVDLKDGIDGLVHISQI 476

Query: 398 SEFEIVKPGKKFKVGAELVFRVLGV 422
           SE  I K     K G E+  RV+ +
Sbjct: 477 SEERIEKVKDVLKPGQEVTARVIKI 501


>gi|374856887|dbj|BAL59740.1| 30S ribosomal protein S1 [uncultured candidate division OP1
            bacterium]
          Length = 567

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 189/451 (41%), Gaps = 69/451 (15%)

Query: 593  LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRL 651
            +L LD    NL++S +  L    +Q   +  S + P  V+ G + +I++ G FV  +G  
Sbjct: 167  ILELDRRERNLVVSHREYLKELERQKKEELFSKLQPGQVIEGTIKSIVDFGLFVD-IGGF 225

Query: 652  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
             G   RS+           TY VG  V   +L V+    RI+LS+KQ             
Sbjct: 226  EGLVHRSEISWKDIPVPPNTYKVGDKVTVKVLGVDRSKERISLSIKQ------------- 272

Query: 712  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 771
                +  I + Q              +  G+   G V    DFG  V  EE  DV G + 
Sbjct: 273  -LRPDPWIGLKQR-------------YPAGTKTTGTVVSLTDFGAFVRIEE--DVEGLVH 316

Query: 772  HHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 824
              +L+          V+ G  ++  +LDV + ER V LS+K V  D + +         +
Sbjct: 317  ISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMKRVQPDPWEKI--------E 368

Query: 825  KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG 884
            ++  E S    VH  V  + +        + L +   ++ + S   ++    P      G
Sbjct: 369  EKYPEGSI---VHGRVTKLADF----GAFVHLEDGVEALLHISEMSWDKVNKPSDVVTEG 421

Query: 885  QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLE 944
            Q + A V+   S ++  ++ L LK + E         K   SY VGS+V+  ITE+K   
Sbjct: 422  QEITAKVIK--SDASKRKIRLSLKELQE-----DPWHKFLESYSVGSIVEGPITELKDFG 474

Query: 945  LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1004
              +K      G IH++E+ D++     ++    ++GQTV ARII  + +    +  +  L
Sbjct: 475  AFMKITDDVEGLIHVSEITDERIATPADV---LQVGQTVKARIIGINEEKRQVRLSMRNL 531

Query: 1005 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1035
              +  ++T S+ G +       +++G+R+ G
Sbjct: 532  HKQEHLVTSSDAGHEA------ITMGERIKG 556



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 166/383 (43%), Gaps = 41/383 (10%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S ++PG V++G + ++  FG  V   GG + L     +S  +I  P   +KVG ++  +V
Sbjct: 198 SKLQPGQVIEGTIKSIVDFGLFVDI-GGFEGLVHRSEISWKDIPVPPNTYKVGDKVTVKV 256

Query: 420 LGV-KSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           LGV +SK RI+++ K+      + +   Y   T    T G +  +   G FVR    V+G
Sbjct: 257 LGVDRSKERISLSIKQLRPDPWIGLKQRYPAGTK---TTGTVVSLTDFGAFVRIEEDVEG 313

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-- 535
               SEL       P  +  VGQ V+  ++      RR++LS      RV  D   K+  
Sbjct: 314 LVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSM----KRVQPDPWEKIEE 369

Query: 536 ----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEF 590
               GS+V G V  +      V++       G     H+++   +       V+  G E 
Sbjct: 370 KYPEGSIVHGRVTKLADFGAFVHL-----EDGVEALLHISEMSWDKVNKPSDVVTEGQEI 424

Query: 591 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-----IHPNSVVHGYVCNIIETGCFV 645
              ++  +       ++K  +  S ++L  D  H         S+V G +  + + G F+
Sbjct: 425 TAKVIKSD-------ASKRKIRLSLKELQEDPWHKFLESYSVGSIVEGPITELKDFGAFM 477

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK-----QSC 700
           +    + G    S+  D + A  +    VGQ+V++ I+ +N E  ++ LS++     +  
Sbjct: 478 KITDDVEGLIHVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMRNLHKQEHL 537

Query: 701 CSSTDASFMQEHFLLEEKIAMLQ 723
            +S+DA    E   + E+I  L+
Sbjct: 538 VTSSDAG--HEAITMGERIKGLK 558



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 178/431 (41%), Gaps = 45/431 (10%)

Query: 109 IEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 166
           ++D GY ++        FLP ++L E+    I+   G  +  ++  +DR  + + +S   
Sbjct: 124 VKDAGYHVNLLKSGIRAFLPGSHLGEDLTPNIEELRGKEVPFIILELDRRERNLVVSHR- 182

Query: 167 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 226
               K + +  K      L PG ++   ++SI++ G+ +  +  F G V    +      
Sbjct: 183 -EYLKELERQKKEELFSKLQPGQVIEGTIKSIVDFGLFVD-IGGFEGLVHRSEI------ 234

Query: 227 TNWK------NDYNQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHVKVG 274
            +WK      N Y    KV  ++L VD +   + L++     +P++ L  R P      G
Sbjct: 235 -SWKDIPVPPNTYKVGDKVTVKVLGVDRSKERISLSIKQLRPDPWIGLKQRYPAGTKTTG 293

Query: 275 DIY---DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 331
            +    D    VR++  +  L+ I       P +         EV K+      G  V V
Sbjct: 294 TVVSLTDFGAFVRIEEDVEGLVHISELSWGYPEH-------PREVVKV------GQQVEV 340

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
            +L     E   +  +K    +           G +V G+V  +  FGA V    GV+AL
Sbjct: 341 VVLDVNEQERRVSLSMKRVQPDPWEKIEEKYPEGSIVHGRVTKLADFGAFVHLEDGVEAL 400

Query: 392 CPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEA 449
             +  MS  ++ KP      G E+  +V+      ++I ++ K+         L SY+  
Sbjct: 401 LHISEMSWDKVNKPSDVVTEGQEITAKVIKSDASKRKIRLSLKELQEDPWHKFLESYSVG 460

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
           +   I  G IT+++  G F++  + V+G    SE+  +    P+ +  VGQ VK RI+  
Sbjct: 461 S---IVEGPITELKDFGAFMKITDDVEGLIHVSEITDERIATPADVLQVGQTVKARIIGI 517

Query: 510 IPASRRINLSF 520
               R++ LS 
Sbjct: 518 NEEKRQVRLSM 528



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 90/171 (52%), Gaps = 6/171 (3%)

Query: 1237 EKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1295
            EKIE+  P   IV G V  +   G F+ L   ++A + +S +S   V  P      G+ +
Sbjct: 365  EKIEEKYPEGSIVHGRVTKLADFGAFVHLEDGVEALLHISEMSWDKVNKPSDVVTEGQEI 424

Query: 1296 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
              +V+  +   +++ ++LK        +     L +  VG IV G I  ++ +G F+ I 
Sbjct: 425  TAKVIKSDASKRKIRLSLKELQEDPWHKF----LESYSVGSIVEGPITELKDFGAFMKIT 480

Query: 1356 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            + ++ GL HVSE++++ +     + + G+ VK +I+ +++EKR++ L M++
Sbjct: 481  D-DVEGLIHVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMRN 530



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 21/232 (9%)

Query: 323 YKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 379
           YK G  V V++LG  R  E ++  I  L+   + GL   +     G    G V+++  FG
Sbjct: 246 YKVGDKVTVKVLGVDRSKERISLSIKQLRPDPWIGLKQRYP---AGTKTTGTVVSLTDFG 302

Query: 380 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 437
           A V+    V+ L  +  +S      P +  KVG ++   VL V  + +R++++ K+    
Sbjct: 303 AFVRIEEDVEGLVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMKRVQPD 362

Query: 438 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 497
               I   Y E +   I HG +TK+   G FV   +GV+     SE+  D   +PS +  
Sbjct: 363 PWEKIEEKYPEGS---IVHGRVTKLADFGAFVHLEDGVEALLHISEMSWDKVNKPSDVVT 419

Query: 498 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK------LGSLVSGVV 543
            GQ +  +++ S  + R+I LS       + ED   K      +GS+V G +
Sbjct: 420 EGQEITAKVIKSDASKRKIRLSL----KELQEDPWHKFLESYSVGSIVEGPI 467



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L P  +++G +K++   G F+ +    +  V  S +S   +  P   + +G  V  +VL 
Sbjct: 200  LQPGQVIEGTIKSIVDFGLFVDIG-GFEGLVHRSEISWKDIPVPPNTYKVGDKVTVKVLG 258

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
            V+   +R+ +++K    +      I        G    G +  +  +G F+ IE  ++ G
Sbjct: 259  VDRSKERISLSIK----QLRPDPWIGLKQRYPAGTKTTGTVVSLTDFGAFVRIEE-DVEG 313

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            L H+SELS  + ++   + + G++V+V +L V++++RR+SL MK
Sbjct: 314  LVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMK 357



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 186/443 (41%), Gaps = 70/443 (15%)

Query: 387 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK---KTLVKSKLA 441
           G++A  P  H+ E   + P  +   G E+ F +L +  + + + V+H+   K L + K  
Sbjct: 137 GIRAFLPGSHLGED--LTPNIEELRGKEVPFIILELDRRERNLVVSHREYLKELERQKKE 194

Query: 442 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 501
            L S  +     +  G I  I   G FV    G +G   RSE+       P + Y VG  
Sbjct: 195 ELFSKLQPGQ--VIEGTIKSIVDFGLFVDI-GGFEGLVHRSEISWKDIPVPPNTYKVGDK 251

Query: 502 VKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVY 554
           V  +++    +  RI+LS   ++P     D  + L      G+  +G V  +T     V 
Sbjct: 252 VTVKVLGVDRSKERISLSIKQLRP-----DPWIGLKQRYPAGTKTTGTVVSLTDFGAFVR 306

Query: 555 VIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQLLVLD-NESSNLL-LSAKYSL 611
           +  +   +G +    L+  + EH    + V+K G +  +++VLD NE    + LS K   
Sbjct: 307 I--EEDVEGLVHISELSWGYPEHP---REVVKVGQQV-EVVVLDVNEQERRVSLSMKRVQ 360

Query: 612 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 671
            +  +++          S+VHG V  + + G FV     +      S+    +    S  
Sbjct: 361 PDPWEKIEEKYPE---GSIVHGRVTKLADFGAFVHLEDGVEALLHISEMSWDKVNKPSDV 417

Query: 672 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 731
              GQ + + ++  ++   +I LSLK+                       LQ    +   
Sbjct: 418 VTEGQEITAKVIKSDASKRKIRLSLKE-----------------------LQEDPWH--- 451

Query: 732 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF-----ITHHQLA--GATVESGS 784
            K++E + +GS++EG + E  DFG  +   +  DV G      IT  ++A     ++ G 
Sbjct: 452 -KFLESYSVGSIVEGPITELKDFGAFMKITD--DVEGLIHVSEITDERIATPADVLQVGQ 508

Query: 785 VIQAAILDVAKAERLVDLSLKTV 807
            ++A I+ + + +R V LS++ +
Sbjct: 509 TVKARIIGINEEKRQVRLSMRNL 531



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 99/468 (21%), Positives = 187/468 (39%), Gaps = 67/468 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE--IVKPGKKFKVGAELVFRVLGV 422
           G +++G+V+ V   G +V      +AL     ++ F    ++PG +     E++   +  
Sbjct: 30  GDILRGRVVQVSDQGVLVDIGYKSEALMKPTELAPFHKAPLQPGDEI----EVLITYIDE 85

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT-KIEKHGCFVRFY-NGVQGFAP 480
           +   I V+ K  L + +++ L        RL   G I  +++  G  V    +G++ F P
Sbjct: 86  EEGTIHVSEKAALYEKRISELERAYRH--RLPITGTIEDEVKDAGYHVNLLKSGIRAFLP 143

Query: 481 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDL---VK 534
            S LG D    P+     G+ V   I+      R + +S   ++ +  R  +++L   ++
Sbjct: 144 GSHLGED--LTPNIEELRGKEVPFIILELDRRERNLVVSHREYLKELERQKKEELFSKLQ 201

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QL 593
            G ++ G +  +    + V +   G  +G +    ++   +   V  +  K G +   ++
Sbjct: 202 PGQVIEGTIKSIVDFGLFVDI---GGFEGLVHRSEIS--WKDIPVPPNTYKVGDKVTVKV 256

Query: 594 LVLDNESSNLLLSAKY----SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
           L +D     + LS K       I   Q+ P+        +   G V ++ + G FVR   
Sbjct: 257 LGVDRSKERISLSIKQLRPDPWIGLKQRYPA-------GTKTTGTVVSLTDFGAFVRIEE 309

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
            + G    S+   G      +   VGQ V   +LDVN +  R++LS+K+           
Sbjct: 310 DVEGLVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMKR----------- 358

Query: 710 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 769
                       +Q       E K+ E    GS++ G+V +  DFG  V  E+  +    
Sbjct: 359 ------------VQPDPWEKIEEKYPE----GSIVHGRVTKLADFGAFVHLEDGVEALLH 402

Query: 770 ITHHQL-----AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
           I+             V  G  I A ++    ++R + LSLK +  D +
Sbjct: 403 ISEMSWDKVNKPSDVVTEGQEITAKVIKSDASKRKIRLSLKELQEDPW 450



 Score = 41.2 bits (95), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 94/427 (22%), Positives = 177/427 (41%), Gaps = 57/427 (13%)

Query: 46  DNLLPTIFHV-GQLVSCIVLQLDDDKKEIGKRKIWLSLR-----LSLLYKGLSLETVQEG 99
           ++L P I  + G+ V  I+L+LD  ++E   R + +S R     L    K      +Q G
Sbjct: 149 EDLTPNIEELRGKEVPFIILELD--RRE---RNLVVSHREYLKELERQKKEELFSKLQPG 203

Query: 100 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-----VVRSID 154
            V+   +KSI D G  +  G   F G + R+ ++    I V P     G      V  +D
Sbjct: 204 QVIEGTIKSIVDFGLFVDIG--GFEGLVHRSEISWKD-IPVPPNTYKVGDKVTVKVLGVD 260

Query: 155 RTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENGVMLSFLTYFTG 213
           R+++ + LS       K +  D   I +    P G   +  V S+ + G  +       G
Sbjct: 261 RSKERISLS------IKQLRPD-PWIGLKQRYPAGTKTTGTVVSLTDFGAFVRIEEDVEG 313

Query: 214 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAP 267
            V I  L   +P  + +      ++V   +L V+   R V L++     +P+  +  + P
Sbjct: 314 LVHISELSWGYP-EHPREVVKVGQQVEVVVLDVNEQERRVSLSMKRVQPDPWEKIEEKYP 372

Query: 268 PS---HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 324
                H +V  + D    V ++ G+  LL              IS+++ ++V K      
Sbjct: 373 EGSIVHGRVTKLADFGAFVHLEDGVEALLH-------------ISEMSWDKVNKPSDVVT 419

Query: 325 EGSCVRVRIL---GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 381
           EG  +  +++     +    L+   L+   +   + ++S    G +V+G +  +  FGA 
Sbjct: 420 EGQEITAKVIKSDASKRKIRLSLKELQEDPWHKFLESYS---VGSIVEGPITELKDFGAF 476

Query: 382 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKL 440
           ++    V+ L  +  +++  I  P    +VG  +  R++G+ + KR      + L K + 
Sbjct: 477 MKITDDVEGLIHVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMRNLHKQEH 536

Query: 441 AILSSYA 447
            + SS A
Sbjct: 537 LVTSSDA 543


>gi|339635169|ref|YP_004726810.1| 30S ribosomal protein S1P [Weissella koreensis KACC 15510]
 gi|420161165|ref|ZP_14667936.1| ribosomal protein S1 [Weissella koreensis KCTC 3621]
 gi|338854965|gb|AEJ24131.1| SSU ribosomal protein S1P [Weissella koreensis KACC 15510]
 gi|394745915|gb|EJF34733.1| ribosomal protein S1 [Weissella koreensis KCTC 3621]
          Length = 432

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 150/291 (51%), Gaps = 54/291 (18%)

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
            +E DIV   +++++ G  GLVV +   + G +  + ++N  V D            L+ Y
Sbjct: 111  NEDDIVEAPVTQVVKG--GLVVDVA-GVRGFIPASMIENRFVQD------------LNQY 155

Query: 1184 DEGQFVKCKVLEI----SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
             +GQ VK +++EI    SR +       LS ++ L    S              + L+++
Sbjct: 156  -KGQTVKAQIIEINVAESRLI-------LSRKAVLSAERS--------------EALKRV 193

Query: 1240 -EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
             E+L+   IV+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +
Sbjct: 194  FEELTVGDIVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYERVSQPSDVLSVGEDVKVK 252

Query: 1299 VLSVEPLSKRVEVTLKTSDS---RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
            VL ++P  +R+ +++K +      +A+Q       N   G ++ G ++RV  +G F+ + 
Sbjct: 253  VLGLDPEKERISLSIKATQPGPWDSAAQ-------NAPEGTVLEGTVRRVVDFGAFVEV- 304

Query: 1356 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
               + GL HVS++S  HV+N   + +AG+KV+VK+L V+ E++R+SL +K+
Sbjct: 305  FPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPERQRLSLSIKA 355



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 17/248 (6%)

Query: 279 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 338
           ++ V +V +G GL++D+       PA    S +    V+ L  +YK G  V+ +I+    
Sbjct: 117 EAPVTQVVKG-GLVVDVAGVRGFIPA----SMIENRFVQDL-NQYK-GQTVKAQIIEINV 169

Query: 339 LEGL----ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 394
            E         +L A   E L     ++  G +V+GKV  + +FGA +   GGV  L  +
Sbjct: 170 AESRLILSRKAVLSAERSEALKRVFEELTVGDIVEGKVARMTNFGAFIDL-GGVDGLVHV 228

Query: 395 PHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDR 452
             +S   + +P     VG ++  +VLG+  + +RI+++ K T      +   +  E T  
Sbjct: 229 SEISYERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKATQPGPWDSAAQNAPEGT-- 286

Query: 453 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 512
            +  G + ++   G FV  + GV+G    S++       PS +   G  V+ +++   P 
Sbjct: 287 -VLEGTVRRVVDFGAFVEVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPE 345

Query: 513 SRRINLSF 520
            +R++LS 
Sbjct: 346 RQRLSLSI 353



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 145/372 (38%), Gaps = 66/372 (17%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQ----VVKCRIMSS------IPASRRINL--SFM 521
           GV+G  P  EL  D   + + +  VG     VVK  I S       I + R++    ++ 
Sbjct: 45  GVEGVIPARELTSDRDADVNDLVKVGDKIEAVVKMPITSEKEGYSWILSKRQLEARRAWE 104

Query: 522 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH--ATV 579
              ++ +EDD+V+     + V  VV    VV     +G+   ++        L       
Sbjct: 105 EIASKYNEDDIVE-----APVTQVVKGGLVVDVAGVRGFIPASMIENRFVQDLNQYKGQT 159

Query: 580 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNI 638
           +K+         Q++ ++   S L+LS K  L    ++ L      +    +V G V  +
Sbjct: 160 VKA---------QIIEINVAESRLILSRKAVLSAERSEALKRVFEELTVGDIVEGKVARM 210

Query: 639 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
              G F+  LG + G    S+    + +  S    VG+ V+  +L ++ E  RI+LS+K 
Sbjct: 211 TNFGAFID-LGGVDGLVHVSEISYERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKA 269

Query: 699 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 758
           +     D                  S+  N  E         G+V+EG V    DFG  V
Sbjct: 270 TQPGPWD------------------SAAQNAPE---------GTVLEGTVRRVVDFGAFV 302

Query: 759 SFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDR 811
             E    V G +   Q++   VE       +G  +Q  +LDV    + + LS+K +    
Sbjct: 303 --EVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPERQRLSLSIKALTEAP 360

Query: 812 FREANSNRQAQK 823
            RE   N   ++
Sbjct: 361 AREGGDNNDGEQ 372



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 152/362 (41%), Gaps = 43/362 (11%)

Query: 358 THSDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
              DVK G VV G+V+ +D +   +V   G GV+ + P   ++           KVG ++
Sbjct: 14  AQPDVKVGDVVTGEVLTIDDAHQVVVGIDGAGVEGVIPARELTSDRDADVNDLVKVGDKI 73

Query: 416 VFRVLGVKSKRITVTHKK-----TLVKSKLAILSSYAEATDRL----ITHGWITKIEKHG 466
              V      ++ +T +K      L K +L    ++ E   +     I    +T++ K G
Sbjct: 74  EAVV------KMPITSEKEGYSWILSKRQLEARRAWEEIASKYNEDDIVEAPVTQVVKGG 127

Query: 467 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSF 520
             V    GV+GF P S +  +   +  + Y  GQ VK +I+      S +  SR+  LS 
Sbjct: 128 LVVDVA-GVRGFIPASMIE-NRFVQDLNQYK-GQTVKAQIIEINVAESRLILSRKAVLSA 184

Query: 521 MMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 578
                  RV E+  + +G +V G V  +T     + +   G   G +    ++   E  +
Sbjct: 185 ERSEALKRVFEE--LTVGDIVEGKVARMTNFGAFIDL---GGVDGLVHVSEIS--YERVS 237

Query: 579 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYV 635
               V+  G +   ++L LD E   + LS     I + Q  P D  A +    +V+ G V
Sbjct: 238 QPSDVLSVGEDVKVKVLGLDPEKERISLS-----IKATQPGPWDSAAQNAPEGTVLEGTV 292

Query: 636 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
             +++ G FV     + G    S+       + S     G  V+  +LDVN E  R++LS
Sbjct: 293 RRVVDFGAFVEVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPERQRLSLS 352

Query: 696 LK 697
           +K
Sbjct: 353 IK 354


>gi|452909695|ref|ZP_21958379.1| SSU ribosomal protein S1p [Kocuria palustris PEL]
 gi|452835067|gb|EME37864.1| SSU ribosomal protein S1p [Kocuria palustris PEL]
          Length = 498

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 192/430 (44%), Gaps = 70/430 (16%)

Query: 1004 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1057
            ++     + V++IG++  F    D +I     G  V G V KVD +  LL I    +  +
Sbjct: 1    MTTTTPQVAVNDIGTEEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVI 60

Query: 1058 FILDSAYEPSELQEFQRRFH------IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1111
                    PS     +   +      +G  +   VL+  KE K  RL+L   +       
Sbjct: 61   --------PSRELSIKHDINPDSVVAVGDEIEALVLT--KEDKEGRLILSKKRAQYERAW 110

Query: 1112 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1171
             DI     +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G
Sbjct: 111  GDI-----EKIKEEDGVVNGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG 163

Query: 1172 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1231
                           Q ++ K++E+ +      +V LS R+ L+   S   SD       
Sbjct: 164  ---------------QQLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSDF------ 199

Query: 1232 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1291
                   +  L    +  G+V ++ + G F+ L   +D  V +S LS  +++ P +   +
Sbjct: 200  -------LNKLQKGQVRTGHVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPGEVVEV 251

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYG 1349
            G+ V   VL V+   +RV ++LK      A+Q +   L +  H +G +V G++ ++  +G
Sbjct: 252  GQEVKVEVLDVDMDRERVSLSLK------ATQEDPWQLFARTHALGQVVPGKVTKLVPFG 305

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
             F+ +E+  + GL H+SEL++ HVD  E +   GE++ VK++ +D ++RRISL +K +  
Sbjct: 306  AFVRVED-GIEGLVHISELAQRHVDMAEQVVSVGEELFVKVIDIDLDRRRISLSLKQANE 364

Query: 1410 KNDADNLQMS 1419
              D D+ +  
Sbjct: 365  GVDPDSTEFD 374



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 124/281 (44%), Gaps = 34/281 (12%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL- 593
           G LV G V  V  + V++ +   GY ++G IP+  L+  ++H     SV+  G E + L 
Sbjct: 33  GDLVEGTVVKVDRDEVLLDI---GYKTEGVIPSRELS--IKHDINPDSVVAVGDEIEALV 87

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLT 652
           L  +++   L+LS K +    A     D   I   + VV+G V  +++ G  +     L 
Sbjct: 88  LTKEDKEGRLILSKKRAQYERAW---GDIEKIKEEDGVVNGTVIEVVKGGLILDI--GLR 142

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 712
           GF P S     +  DL+   Y+GQ + + I++++     + LS +++    T  S ++  
Sbjct: 143 GFLPASLVEMRRVRDLAP--YIGQQLEAKIIELDKNRNNVVLS-RRAWLEQT-QSEVRSD 198

Query: 713 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 772
           FL   K+   Q    + S +     F+    ++G VH S      +S++          H
Sbjct: 199 FL--NKLQKGQVRTGHVSSIVNFGAFVDLGGVDGLVHVSE-----LSWK----------H 241

Query: 773 HQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
               G  VE G  ++  +LDV      V LSLK    D ++
Sbjct: 242 IDHPGEVVEVGQEVKVEVLDVDMDRERVSLSLKATQEDPWQ 282



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 145/348 (41%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    + P     VG E+   VL  + 
Sbjct: 33  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDINPDSVVAVGDEIEALVLTKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E     + +G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKIKEEDG--VVNGTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSDFLNKLQ 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + +G V  +      V +   G   G +    L+  H++H      V++ G E   +
Sbjct: 205 KGQVRTGHVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVEVGQEVKVE 258

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 259 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 314

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VG+ +   ++D++ +  RI+LSLKQ+
Sbjct: 315 EGLVHISELAQRHVDMAEQVVSVGEELFVKVIDIDLDRRRISLSLKQA 362


>gi|410667902|ref|YP_006920273.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Thermacetogenium
            phaeum DSM 12270]
 gi|409105649|gb|AFV11774.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH
            [Thermacetogenium phaeum DSM 12270]
          Length = 708

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 10/203 (4%)

Query: 1234 KHLEK----IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1289
            +HLE      E + P+ I +G V+++T+ G F+ L   +D  + +S LS G V+ P    
Sbjct: 497  EHLEAQRRLWETIEPDQIRKGTVRHLTNFGAFVDLG-GVDGLLHISELSWGRVKHPSDVV 555

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1349
              G  +   VLSV+   KR+ ++LK          +        VG+IV G + R+ S+G
Sbjct: 556  QEGDEIEVYVLSVDKERKRISLSLKQVQGNPWDTVD----ERYQVGEIVTGTVVRLVSFG 611

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
             F+ +E   + GL H+S +++ HV+  E I   GE+++VKIL ++K+ +RISL +K +  
Sbjct: 612  AFVELE-PGVEGLVHISRMADYHVEKPEDIVAVGEQIQVKILDINKQDQRISLSIKDARS 670

Query: 1410 KNDADNLQMSSEEESDEAIEEVG 1432
              +        EE+S  A   VG
Sbjct: 671  DKNEPRGNTQEEEKSQPASAGVG 693



 Score = 40.8 bits (94), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
           G +V G V+ + SFGA V+   GV+ L  +  M+++ + KP     VG ++  ++L +  
Sbjct: 597 GEIVTGTVVRLVSFGAFVELEPGVEGLVHISRMADYHVEKPEDIVAVGEQIQVKILDINK 656

Query: 423 KSKRITVTHK 432
           + +RI+++ K
Sbjct: 657 QDQRISLSIK 666


>gi|229820681|ref|YP_002882207.1| 30S ribosomal protein S1 [Beutenbergia cavernae DSM 12333]
 gi|229566594|gb|ACQ80445.1| RNA binding S1 domain protein [Beutenbergia cavernae DSM 12333]
          Length = 488

 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 173/380 (45%), Gaps = 52/380 (13%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            G  V G + KVD +  LL I    K +  IL          + +    +G+ V   VL  
Sbjct: 39   GDIVEGTIVKVDRDEVLLDIG--YKTEGVILSRELSIKHDVDPEEVVSVGERVEALVL-- 94

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
             KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++ IG 
Sbjct: 95   QKEDKEGRLLLSKKR-----AQYERAWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGL 147

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
              +      E++ +    P  G +               ++ K++E+ +      +V LS
Sbjct: 148  RGFLPASLVEMRRVRDLQPYVGKE---------------LEAKIIELDKNRN---NVVLS 189

Query: 1210 LRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
             R+ L+   S   S+ L+T              L    I  G V ++ + G F+ L   +
Sbjct: 190  RRAWLEQTQSEVRSTFLAT--------------LQKGQIRNGVVSSIVNFGAFVDLG-GV 234

Query: 1269 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1328
            D  V +S LS  +++ P +   +G+ V   VL VE   +RV ++LK +      Q     
Sbjct: 235  DGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVELDRERVSLSLKATQEDPWQQ----- 289

Query: 1329 LSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
             +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+  HV+  E + + GE+V 
Sbjct: 290  FARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAVRHVEVPEQVAKVGEEVF 348

Query: 1388 VKILKVDKEKRRISLGMKSS 1407
            VK++ +D E+RRISL +K +
Sbjct: 349  VKVIDIDLERRRISLSLKQA 368



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G +  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LQKGQIRNGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 267

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V+   +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VELDRERVSLSLKATQEDPWQQFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +     P  +  VG+ V  +++      RRI+LS 
Sbjct: 325 HISELAVRHVEVPEQVAKVGEEVFVKVIDIDLERRRISLSL 365



 Score = 43.9 bits (102), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 144/367 (39%), Gaps = 50/367 (13%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  I  G I K+++    +      +G     EL +    +P  +  VG+ V+  ++   
Sbjct: 38  DGDIVEGTIVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEVVSVGERVEALVLQKE 97

Query: 511 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS        +   + K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLLLSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 625
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLATL 209

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
               + +G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV
Sbjct: 210 QKGQIRNGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDV 268

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
             +  R++LSLK +        F + H                           IG V+ 
Sbjct: 269 ELDRERVSLSLK-ATQEDPWQQFARTH--------------------------AIGQVVP 301

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAER 798
           GKV +   FG  V  E+   + G +   +LA   VE        G  +   ++D+    R
Sbjct: 302 GKVTKLVPFGAFVRVEDG--IEGLVHISELAVRHVEVPEQVAKVGEEVFVKVIDIDLERR 359

Query: 799 LVDLSLK 805
            + LSLK
Sbjct: 360 RISLSLK 366



 Score = 40.8 bits (94), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + +     +S    V P +   VG  +   VL  + 
Sbjct: 39  GDIVEGTIVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEVVSVGERVEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLLLSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLATLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQIRNGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L ++ +   + LS K +  +  QQ     +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLDVELDRERVSLSLKATQEDPWQQF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVEVPEQVAKVGEEVFVKVIDIDLERRRISLSLKQA 368


>gi|145295496|ref|YP_001138317.1| 30S ribosomal protein S1 [Corynebacterium glutamicum R]
 gi|140845416|dbj|BAF54415.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 486

 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 187/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNL--SNLHVGDIVIGQIKRVESYGLFITIENTN 1358
             V+   +RV ++LK      A+Q +   +   N  VG IV G++ ++  +G F+ +E   
Sbjct: 262  DVDLDRERVSLSLK------ATQEDPWRVFARNHAVGQIVPGKVTKLVPFGAFVRVEE-G 314

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL++ HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 315  IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARNHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    A +     +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARNHAVGQIVPGKVTKLVPFGAFVR 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 405


>gi|377574946|ref|ZP_09803956.1| 30S ribosomal protein S1 [Mobilicoccus pelagius NBRC 104925]
 gi|377536455|dbj|GAB49121.1| 30S ribosomal protein S1 [Mobilicoccus pelagius NBRC 104925]
          Length = 485

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 191/415 (46%), Gaps = 64/415 (15%)

Query: 1004 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1053
            +++    + +++IGS+  L    D +I     G  V G + KVD +  LL I       +
Sbjct: 1    MTVSHPEIAINDIGSEEDLLAAIDATIKHFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVI 60

Query: 1054 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1113
             ++   +    +P+E+        +G       L + KE K  RL+L   +        +
Sbjct: 61   PSRELSIKHDVDPNEV--------VGVGDEVEALVLQKEDKEGRLILSKKR-----AQYE 107

Query: 1114 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1173
             +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +
Sbjct: 108  RAWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE 165

Query: 1174 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1233
                           ++ K++E+ +      +V LS R+ L+   S   ++         
Sbjct: 166  ---------------IEAKIIELDKN---RNNVVLSRRAWLEQTQSEVRTNF-------- 199

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
                 +++L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+
Sbjct: 200  -----LQELGKGQVRTGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQ 253

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFI 1352
             V   VL V+   +RV ++LK +      +    + +  H +G +V G++ ++  +G F+
Sbjct: 254  EVKVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFV 308

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             +++  + GL H+SEL+E HV+  E + + G+++ VK++ +D E+RRISL +K +
Sbjct: 309  RVDD-GIEGLVHISELAERHVELPEQVVQVGQEIFVKVIDIDLERRRISLSLKQA 362



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 152/352 (43%), Gaps = 31/352 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 33  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVGVGDEVEALVLQKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    + 
Sbjct: 149 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQELG 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVKVE 258

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 259 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAFVRVDDGI 314

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
            G    S+  +       +   VGQ +   ++D++ E  RI+LSLKQ+   S
Sbjct: 315 EGLVHISELAERHVELPEQVVQVGQEIFVKVIDIDLERRRISLSLKQANDPS 366



 Score = 44.7 bits (104), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 136/306 (44%), Gaps = 48/306 (15%)

Query: 1031 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1081
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 107  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 165

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
            +   ++ ++K +  + L  R +     ++T      N    + +G +  G +S I++   
Sbjct: 166  IEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRTNFLQELGKGQVRTGVVSSIVNF-- 219

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
            G  V +G  + G VH +EL    +  P    + GQ            VK +VL++     
Sbjct: 220  GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQE-----------VKVEVLDVDMDRE 267

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
                V LSL+++ +                P +H  +   +    +V G V  +   G F
Sbjct: 268  ---RVSLSLKATQE---------------DPWQHFARTHAI--GQVVPGKVTKLVPFGAF 307

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            + +   ++  V +S L++ +VE PE+   +G+ +  +V+ ++   +R+ ++LK ++  + 
Sbjct: 308  VRVDDGIEGLVHISELAERHVELPEQVVQVGQEIFVKVIDIDLERRRISLSLKQANDPSV 367

Query: 1322 SQSEIN 1327
            + +E +
Sbjct: 368  ATTEFD 373


>gi|367467422|ref|ZP_09467362.1| SSU ribosomal protein S1p [Patulibacter sp. I11]
 gi|365817505|gb|EHN12463.1| SSU ribosomal protein S1p [Patulibacter sp. I11]
          Length = 494

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 22/218 (10%)

Query: 1188 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1247
             ++CKV+E++R      +V LS R+ L+         +             ++ L P +I
Sbjct: 161  IIECKVIELNRQ---RNNVVLSRRAVLEEERKEQRQAI-------------LDVLQPGVI 204

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V+G + N+   G F+ L+  +D  + +S LS  +V  P +   IG  V  +VL ++   +
Sbjct: 205  VEGQISNIVDFGAFVDLN-GIDGLIHISELSWTHVNHPTEVVAIGDTVQVKVLDIDRDRQ 263

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
            R+ + LK    +T        +   +VGD + G + +V ++G F+ I    + GL H+SE
Sbjct: 264  RISLGLK----QTQEDPWQRVVDTYNVGDELEGTVTKVVTFGAFVEI-MEGVEGLVHISE 318

Query: 1368 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            L+  HV++   +   G+ VKVKIL++D ++RR+SL +K
Sbjct: 319  LAAHHVESPREVVHPGDDVKVKILEIDDDRRRLSLSVK 356



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++PG++V+G++  +  FGA V    G+  L  +  +S   +  P +   +G  +  +VL 
Sbjct: 199 LQPGVIVEGQISNIVDFGAFVDL-NGIDGLIHISELSWTHVNHPTEVVAIGDTVQVKVLD 257

Query: 422 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           +    +RI++  K+T       ++ +Y    D L   G +TK+   G FV    GV+G  
Sbjct: 258 IDRDRQRISLGLKQTQEDPWQRVVDTY-NVGDEL--EGTVTKVVTFGAFVEIMEGVEGLV 314

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
             SEL       P  + H G  VK +I+      RR++LS
Sbjct: 315 HISELAAHHVESPREVVHPGDDVKVKILEIDDDRRRLSLS 354



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            L  L  G IV GQI  +  +G F+ +   +  GL H+SELS  HV++   +   G+ V+V
Sbjct: 196  LDVLQPGVIVEGQISNIVDFGAFVDLNGID--GLIHISELSWTHVNHPTEVVAIGDTVQV 253

Query: 1389 KILKVDKEKRRISLGMKSS 1407
            K+L +D++++RISLG+K +
Sbjct: 254  KVLDIDRDRQRISLGLKQT 272



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 44/227 (19%)

Query: 592 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           +++ L+ + +N++LS +  L     +Q  +    + P  +V G + NI++ G FV   G 
Sbjct: 165 KVIELNRQRNNVVLSRRAVLEEERKEQRQAILDVLQPGVIVEGQISNIVDFGAFVDLNG- 223

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+         ++   +G +V+  +LD++ +  RI+L LKQ+           
Sbjct: 224 IDGLIHISELSWTHVNHPTEVVAIGDTVQVKVLDIDRDRQRISLGLKQT----------- 272

Query: 711 EHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 767
                               E  W   V+ + +G  +EG V +   FG  V   E   V 
Sbjct: 273 -------------------QEDPWQRVVDTYNVGDELEGTVTKVVTFGAFVEIMEG--VE 311

Query: 768 GFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 807
           G +   +LA   VES       G  ++  IL++    R + LS+K V
Sbjct: 312 GLVHISELAAHHVESPREVVHPGDDVKVKILEIDDDRRRLSLSVKRV 358


>gi|336119735|ref|YP_004574512.1| 30S ribosomal protein S1 [Microlunatus phosphovorus NM-1]
 gi|334687524|dbj|BAK37109.1| 30S ribosomal protein S1 [Microlunatus phosphovorus NM-1]
          Length = 488

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 182/417 (43%), Gaps = 64/417 (15%)

Query: 1008 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1057
            P  + + ++GS   F    D +I     G  VTG V KVD +  LL I       + ++ 
Sbjct: 8    PPQVAIDDLGSPEAFLAAIDATIKYFNDGDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKE 67

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +P E+        +G  +    L   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPFEV------VSVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWG 114

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G      
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVG------ 166

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                     Q ++ K++E+ +      +V LS R+ L+   S    +  T          
Sbjct: 167  ---------QELEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNFLTQ--------- 205

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
                L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 206  ----LQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E 
Sbjct: 261  EVLDVDMDRERVSLSLKAT-----QEDPWQAFARTHQIGQIVPGKVTKLVPFGAFVRVEE 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
              + GL HVSEL+E HV+  E +    + V VKI+ +D E+RRISL +K +    DA
Sbjct: 316  -GIEGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLERRRISLSLKQANEGVDA 371



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 149/349 (42%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 36  GDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVSVGDEIEALVQQKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGQELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLTQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 262 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHQIGQIVPGKVTKLVPFGAFVRVEEG 316

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+  +       +   V   V   I+D++ E  RI+LSLKQ+
Sbjct: 317 IEGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLERRRISLSLKQA 365


>gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            ATCC BAA-365]
 gi|385815547|ref|YP_005851938.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            2038]
 gi|116093232|gb|ABJ58385.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
            bulgaricus ATCC BAA-365]
 gi|325125584|gb|ADY84914.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            2038]
          Length = 401

 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 45/265 (16%)

Query: 1172 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1226
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1227 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1260
                    T++D P K      H E IE+            L    +V+G V  +T+ G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGS 212

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
              Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HVSE++  HVD    + 
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEIAYKHVDKPSDVL 326

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMK 1405
              G KVKVK+L +D  KRRISL +K
Sbjct: 327  TVGPKVKVKVLNIDPSKRRISLSIK 351



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 279 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 335
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 395
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 396 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 453
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 454 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 511
             +  G +  +   G FV   +G+QG    SE+      +PS +  VG  VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDP 341

Query: 512 ASRRINLSF 520
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 34/199 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD+V GR+S++ +   G  V IG  + G VH +E+    V  P         D L     
Sbjct: 197  GDVVEGRVSRLTN--FGSFVDIG-GVDGLVHISEISYKHVDKP--------SDVLK---V 242

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +                  P    +    L+  
Sbjct: 243  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATSSLNEG 282

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             +++G VK++T+ G F+ ++  +   V +S ++  +V+ P     +G  V  +VL+++P 
Sbjct: 283  DVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPS 342

Query: 1306 SKRVEVTLKTSDSRTASQS 1324
             +R+ +++K  D   AS S
Sbjct: 343  KRRISLSIKQVDPENASSS 361



 Score = 44.3 bits (103), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 141/365 (38%), Gaps = 53/365 (14%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 529
           GV+G   R +   D          +G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 530 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 587 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 645
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 766 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 818
           + G +   ++A   V+        G  ++  +L++  ++R + LS+K V  +    +N  
Sbjct: 305 IQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVDPENASSSNDR 364

Query: 819 RQAQK 823
            +A++
Sbjct: 365 PRARR 369


>gi|350569650|ref|ZP_08938046.1| 30S ribosomal protein S1 [Propionibacterium avidum ATCC 25577]
 gi|348660468|gb|EGY77178.1| 30S ribosomal protein S1 [Propionibacterium avidum ATCC 25577]
          Length = 498

 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.9 bits (115), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|418029506|ref|ZP_12668044.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
            subsp. bulgaricus CNCM I-1632]
 gi|354689812|gb|EHE89785.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
            subsp. bulgaricus CNCM I-1632]
          Length = 401

 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 135/265 (50%), Gaps = 45/265 (16%)

Query: 1172 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1226
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1227 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1260
                    T++D P K      H E IE+            L    +V+G V  +T+ G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGS 212

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
              Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HVSE++  HVD    + 
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEIAYKHVDKPSDVL 326

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMK 1405
              G KVKVK+L +D  KRRISL +K
Sbjct: 327  TVGPKVKVKVLNIDPSKRRISLSIK 351



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 279 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 335
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 395
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 396 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 453
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 454 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 511
             +  G +  +   G FV   +G+QG    SE+      +PS +  VG  VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDP 341

Query: 512 ASRRINLSF 520
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 34/208 (16%)

Query: 1117 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1176
            +N+ + +  GD+V GR+S++ +   G  V IG  + G VH +E+    V  P        
Sbjct: 188  ENVASQLVVGDVVEGRVSRLTN--FGSFVDIG-GVDGLVHISEISYKHVDKP-------- 236

Query: 1177 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1236
             D L     GQ VK KV+ I         + LS++ +                  P    
Sbjct: 237  SDVLK---VGQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFE 273

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            +    L+   +++G VK++T+ G F+ ++  +   V +S ++  +V+ P     +G  V 
Sbjct: 274  QATSSLNEGDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVK 333

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
             +VL+++P  +R+ +++K  D   AS S
Sbjct: 334  VKVLNIDPSKRRISLSIKQVDPENASSS 361



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 142/365 (38%), Gaps = 53/365 (14%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 529
           GV+G   R +   D          +G  +K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTIKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 530 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 587 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 645
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 766 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 818
           + G +   ++A   V+        G  ++  +L++  ++R + LS+K V  +    +N  
Sbjct: 305 IQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVDPENASSSNDR 364

Query: 819 RQAQK 823
            +A++
Sbjct: 365 PRARR 369


>gi|300741419|ref|ZP_07071440.1| ribosomal protein S1 [Rothia dentocariosa M567]
 gi|311113502|ref|YP_003984724.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931]
 gi|300380604|gb|EFJ77166.1| ribosomal protein S1 [Rothia dentocariosa M567]
 gi|310944996|gb|ADP41290.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931]
          Length = 486

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 189/416 (45%), Gaps = 66/416 (15%)

Query: 1004 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1053
            +S     + +++IG++  F +  D +I     G  V+G V KVD++  LL I       +
Sbjct: 1    MSTNIPQVAINDIGNEEEFLKAVDETIKYFNDGDLVSGQVVKVDHDEVLLDIGYKTEGVI 60

Query: 1054 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1113
             ++   +    +P E+        +G  +   VL+  KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDVDPGEV------VAVGDEIEALVLT--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1114 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            I        I E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------IKENDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
                          Q ++ K++E+ +      +V LS R+ L+   S   S         
Sbjct: 164  --------------QQLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSTF------- 199

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
                  +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 200  ------LNQLEKGQVREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLF 1351
            + V   VL V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F
Sbjct: 253  QPVTVEVLEVDLDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAF 307

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +E+  + GL H+SEL+  HVD  E +   GE++ VKI+ +D ++RRISL +K +
Sbjct: 308  VRVED-GIEGLVHISELAVRHVDLAEQVVSVGEELFVKIIDIDMDRRRISLSLKQA 362



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   VL 
Sbjct: 203 LEKGQVREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLE 261

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G  
Sbjct: 262 VDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +        +  VG+ +  +I+      RRI+LS 
Sbjct: 319 HISELAVRHVDLAEQVVSVGEELFVKIIDIDMDRRRISLSL 359



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 37/351 (10%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G+V+ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 33  GDLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDEIEALVLTKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKIKE-NDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNQLE 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P    + L
Sbjct: 205 KGQVREGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQP-VTVEVL 260

Query: 594 LV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
            V LD E  +L L A        Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 261 EVDLDRERVSLSLKA-------TQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 651 LTGFAPRSK-AVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+ AV  +  DL+ +   VG+ +   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAV--RHVDLAEQVVSVGEELFVKIIDIDMDRRRISLSLKQA 362


>gi|282854237|ref|ZP_06263574.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
 gi|386071678|ref|YP_005986574.1| 30S ribosomal protein S1 [Propionibacterium acnes ATCC 11828]
 gi|422390898|ref|ZP_16470993.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1]
 gi|422459760|ref|ZP_16536408.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2]
 gi|422464648|ref|ZP_16541255.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1]
 gi|422466302|ref|ZP_16542878.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4]
 gi|422470228|ref|ZP_16546749.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3]
 gi|422564991|ref|ZP_16640642.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2]
 gi|422576182|ref|ZP_16651720.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1]
 gi|282583690|gb|EFB89070.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
 gi|314923224|gb|EFS87055.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1]
 gi|314966991|gb|EFT11090.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2]
 gi|314980945|gb|EFT25039.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3]
 gi|315091676|gb|EFT63652.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4]
 gi|315093089|gb|EFT65065.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1]
 gi|315103138|gb|EFT75114.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2]
 gi|327327811|gb|EGE69587.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1]
 gi|353456044|gb|AER06563.1| 30S ribosomal protein S1 [Propionibacterium acnes ATCC 11828]
          Length = 498

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|395204361|ref|ZP_10395301.1| 30S ribosomal protein S1 [Propionibacterium humerusii P08]
 gi|422440242|ref|ZP_16517056.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3]
 gi|422471366|ref|ZP_16547866.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2]
 gi|422572458|ref|ZP_16648028.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1]
 gi|313837427|gb|EFS75141.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2]
 gi|314929361|gb|EFS93192.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1]
 gi|314971634|gb|EFT15732.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3]
 gi|328907023|gb|EGG26789.1| 30S ribosomal protein S1 [Propionibacterium humerusii P08]
          Length = 498

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            +TV ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VTVDDLGSTEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S                   + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQSF-------------LH 221

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R S    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQSFLHQLQ 224

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|405983923|ref|ZP_11042228.1| ribosomal protein S1 [Slackia piriformis YIT 12062]
 gi|404388738|gb|EJZ83820.1| ribosomal protein S1 [Slackia piriformis YIT 12062]
          Length = 396

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 148/305 (48%), Gaps = 48/305 (15%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            G++V G + +++ G  GL++ IG   +      +L+ +   D   G +            
Sbjct: 121  GEVVTGEVIEVVKG--GLILDIGLRGFLPASLVDLRRVKDLDMYLGTE------------ 166

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
               ++ +V+E+ R      +V LS R  L+ G  +  +  LS               L+ 
Sbjct: 167  ---IEARVIEMDRN---RNNVVLSRRVLLEEGRKNERAEILSK--------------LAK 206

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
             M ++G V ++   G F+ L   +D  V +S LS  +V  P +   +G  V   VL V+ 
Sbjct: 207  GMRLKGTVSSIVDFGAFVDLG-GIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDL 265

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
              +R+ + LK    +T     +  + +  VG IV G++ ++  +G FI + N N+ GL H
Sbjct: 266  QRERISLGLK----QTTEDPWLKLVESYPVGSIVDGKVTKIVPFGAFIELGN-NVEGLVH 320

Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1424
            +SE++  H+D    + + G++VKVK+++++ ++RRISL MK++     AD L    E E 
Sbjct: 321  ISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRISLSMKAA-----ADELGF--EIEV 373

Query: 1425 DEAIE 1429
            DE I+
Sbjct: 374  DETIQ 378



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +  GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 202 SKLAKGMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEV 260

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V  + +RI++  K+T     L ++ SY   +   I  G +TKI   G F+   N V+G
Sbjct: 261 LDVDLQRERISLGLKQTTEDPWLKLVESYPVGS---IVDGKVTKIVPFGAFIELGNNVEG 317

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SE+       P+ +  VGQ VK ++M   P  RRI+LS 
Sbjct: 318 LVHISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRISLSM 360



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/365 (19%), Positives = 148/365 (40%), Gaps = 50/365 (13%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G + K+E     +      +G  P  EL +    +PS +  +G  ++  ++      
Sbjct: 36  LVKGTVVKLEHDEVLLDIGFKSEGVIPSRELSIRKDADPSDIVALGDEIEALVLQKEDKD 95

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +   +  ++  K G +V+G V  V    +++ +  +G+   ++     
Sbjct: 96  GRLILSKKRAEYERAWIQVEEKFKAGEVVTGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 628
              L+           G E + +++ +D   +N++LS +  L    +   ++  S +   
Sbjct: 156 VKDLDMYL--------GTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLAKG 207

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
             + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 208 MRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDLQ 266

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             RI+L LKQ+                                LK VE + +GS+++GKV
Sbjct: 267 RERISLGLKQTTEDPW---------------------------LKLVESYPVGSIVDGKV 299

Query: 749 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 801
            +   FG  +     ++V G +   ++A   +++       G  ++  ++++    R + 
Sbjct: 300 TKIVPFGAFIEL--GNNVEGLVHISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRIS 357

Query: 802 LSLKT 806
           LS+K 
Sbjct: 358 LSMKA 362



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 151/354 (42%), Gaps = 27/354 (7%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           T ++   G +VKG V+ ++    ++      + + P   +S  +   P     +G E+  
Sbjct: 27  TLTNFDEGDLVKGTVVKLEHDEVLLDIGFKSEGVIPSRELSIRKDADPSDIVALGDEIEA 86

Query: 418 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
            VL  + K  R+ ++ K+   +     +    +A +  +  G + ++ K G  +    G+
Sbjct: 87  LVLQKEDKDGRLILSKKRAEYERAWIQVEEKFKAGE--VVTGEVIEVVKGGLILDI--GL 142

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSE 529
           +GF P S + L    +   MY +G  ++ R++      +++  SRR+ L    K  R   
Sbjct: 143 RGFLPASLVDLRR-VKDLDMY-LGTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEI 200

Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGY 588
              +  G  + G V  +      V +   G   G +    L+ +H+ H +    V+K G 
Sbjct: 201 LSKLAKGMRLKGTVSSIVDFGAFVDL---GGIDGLVHISELSWNHVNHPS---EVVKVGD 254

Query: 589 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 646
           E + ++L +D +   + L  K +  +   +L       +P  S+V G V  I+  G F+ 
Sbjct: 255 EVEVEVLDVDLQRERISLGLKQTTEDPWLKLVES----YPVGSIVDGKVTKIVPFGAFIE 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
               + G    S+         ++   VGQ V+  ++++N +  RI+LS+K + 
Sbjct: 311 LGNNVEGLVHISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRISLSMKAAA 364


>gi|400291413|ref|ZP_10793431.1| 30S ribosomal protein S1 [Actinomyces naeslundii str. Howell 279]
 gi|399903470|gb|EJN86207.1| 30S ribosomal protein S1 [Actinomyces naeslundii str. Howell 279]
          Length = 484

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 187/411 (45%), Gaps = 64/411 (15%)

Query: 1008 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1057
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 203  -LQTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 261  EVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.0 bits (110), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 33/357 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+      AS
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPAS 373


>gi|221195607|ref|ZP_03568661.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
 gi|221184373|gb|EEE16766.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
          Length = 441

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 178/387 (45%), Gaps = 56/387 (14%)

Query: 1025 CDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGK 1080
             D + G  VTG V K++ +  LL I       + A+   +    EPSEL       H+G 
Sbjct: 29   TDFNEGDLVTGTVVKIERDEVLLDIGYKSEGVIPARELSIRKDVEPSEL------VHMGD 82

Query: 1081 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1140
             +   VL   KE K  RLVL   +        + S   ++   + G+ V G + +++ G 
Sbjct: 83   EIEALVL--QKEDKEGRLVLSKKR-----AEYERSWKAVEEKFNAGETVEGEVIEVVKG- 134

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
             GL++ IG  L G +            P S  D  +   LS +  G  ++ +V+E+ R  
Sbjct: 135  -GLILDIG--LRGFL------------PASLVDLRRVKDLSTF-MGTRIEARVIEMDRN- 177

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                +V LS R  L+        D+       GK       L   M +QG V ++   G 
Sbjct: 178  --RNNVVLSRRVVLEEARKAERQDI------LGK-------LKVGMKLQGTVSSIVEFGA 222

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ L   +D  V +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK    +T
Sbjct: 223  FVDLG-GIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK----QT 277

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
                    +S   V  IV G + ++ ++G F+ +    + GL H+SE+++ HV     + 
Sbjct: 278  TEDPWRVLVSKFPVDAIVEGTVTKLVTFGAFVDL-GDGVEGLVHISEMAKQHVTAPSQVC 336

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSS 1407
              G+KV+VK++++D ++RRISL MK++
Sbjct: 337  TVGDKVQVKVMEIDLDRRRISLSMKAA 363



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K GM ++G V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL 
Sbjct: 204 LKVGMKLQGTVSSIVEFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLD 262

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +RI++  K+T       ++S +       I  G +TK+   G FV   +GV+G  
Sbjct: 263 VDLNRERISLGLKQTTEDPWRVLVSKFPVDA---IVEGTVTKLVTFGAFVDLGDGVEGLV 319

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SE+       PS +  VG  V+ ++M      RRI+LS 
Sbjct: 320 HISEMAKQHVTAPSQVCTVGDKVQVKVMEIDLDRRRISLSM 360



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 143/367 (38%), Gaps = 54/367 (14%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G + KIE+    +      +G  P  EL +    EPS + H+G  ++  ++      
Sbjct: 36  LVTGTVVKIERDEVLLDIGYKSEGVIPARELSIRKDVEPSELVHMGDEIEALVLQKEDKE 95

Query: 514 RRINLSFMMKPTRVSE---DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS        S    ++    G  V G V  V    +++ +  +G+   ++     
Sbjct: 96  GRLVLSKKRAEYERSWKAVEEKFNAGETVEGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 571 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNS 629
              L  +T M + I+      +++ +D   +N++LS +  L  + +    D    +    
Sbjct: 156 VKDL--STFMGTRIEA-----RVIEMDRNRNNVVLSRRVVLEEARKAERQDILGKLKVGM 208

Query: 630 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
            + G V +I+E G FV  LG + G    S+         S+   VGQ V   +LDV+   
Sbjct: 209 KLQGTVSSIVEFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNR 267

Query: 690 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVIEG 746
            RI+L LKQ+                              +E  W   V  F + +++EG
Sbjct: 268 ERISLGLKQT------------------------------TEDPWRVLVSKFPVDAIVEG 297

Query: 747 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERL 799
            V +   FG  V   +   V G +   ++A   V +       G  +Q  ++++    R 
Sbjct: 298 TVTKLVTFGAFVDLGDG--VEGLVHISEMAKQHVTAPSQVCTVGDKVQVKVMEIDLDRRR 355

Query: 800 VDLSLKT 806
           + LS+K 
Sbjct: 356 ISLSMKA 362


>gi|422554450|ref|ZP_16630222.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2]
 gi|314987702|gb|EFT31793.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2]
          Length = 498

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTESVIPSKELSI 87

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      +++ P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTESVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|283780187|ref|YP_003370942.1| 30S ribosomal protein S1 [Pirellula staleyi DSM 6068]
 gi|283438640|gb|ADB17082.1| ribosomal protein S1 [Pirellula staleyi DSM 6068]
          Length = 600

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 179/391 (45%), Gaps = 68/391 (17%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKA 1081
            ++ IGQ   G V  +    A + +   +   L I D ++E    PSE+    +   +   
Sbjct: 215  ELEIGQVRKGVVKNIAEFGAFVDLG-GIDGLLHITDMSWERIGHPSEMVAIDQEIEV--- 270

Query: 1082 VTGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
                VL I++EKK + L L+     P+ D             + T    G +V G +  +
Sbjct: 271  ---MVLHIDREKKKIALGLKQKEGNPWAD-------------VDTKYPVGTVVKGSVVNV 314

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
            +S   G  V++ P + G VH +E+           +      P    + G  +   +L +
Sbjct: 315  MSY--GAFVKLEPGIEGLVHISEMS----------WTRRVNHPSELVNIGDEISVVILGV 362

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNV 1255
             +  +     +LSL     GM  T  +  +           ++ +  P + IV+G V+N+
Sbjct: 363  DKDGQ-----QLSL-----GMKQTQENPWT-----------RVAEKYPVDTIVEGKVRNL 401

Query: 1256 TSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            T+ G F+ L   +D  + +S++S    +  P +    G+ V  ++LSV+   +R+ + LK
Sbjct: 402  TNYGAFVELEEGIDGLLHVSDMSWTRKISHPSEMLEKGQPVRCKILSVDQERRRIALGLK 461

Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
              D    ++   +       G +V G + ++ ++G+F+ +E+  L GL H+SEL++  V+
Sbjct: 462  QLDEDPWAR---DIPGKYQPGQVVSGAVTKITNFGVFVGLED-GLEGLLHISELADHKVE 517

Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            N E + + G+K+ VKIL+VD ++R+I L  K
Sbjct: 518  NPEDVVKVGDKIDVKILRVDIDERKIGLSRK 548



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 137/290 (47%), Gaps = 39/290 (13%)

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
            M   I EG +V G +S+ + G  GL+V I             + + V  P S  D  +  
Sbjct: 125  MMDRIKEGQVVTGTVSRKIKG--GLLVDI-------------EGVNVFLPASQVDIRRPA 169

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
             +  Y  G+ V+C+VL+I    R   ++ +S RS ++     +   L             
Sbjct: 170  DIGDYI-GRTVQCEVLKIDEARR---NIVVSRRSLIERQREEDREAL------------- 212

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +++L    + +G VKN+   G F+ L   +D  + ++++S   +  P +   I + +   
Sbjct: 213  LKELEIGQVRKGVVKNIAEFGAFVDLG-GIDGLLHITDMSWERIGHPSEMVAIDQEIEVM 271

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VL ++   K++ + LK  +    +  +    +   VG +V G +  V SYG F+ +E   
Sbjct: 272  VLHIDREKKKIALGLKQKEGNPWADVD----TKYPVGTVVKGSVVNVMSYGAFVKLE-PG 326

Query: 1359 LVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SE+S    V++   +   G+++ V IL VDK+ +++SLGMK +
Sbjct: 327  IEGLVHISEMSWTRRVNHPSELVNIGDEISVVILGVDKDGQQLSLGMKQT 376



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IG+ V   VL ++   + + V+ ++   R   +     L  L +G +  G +K +  +G 
Sbjct: 175  IGRTVQCEVLKIDEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKNIAEFGA 234

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
            F+ +   +  GL H++++S + + +   +    ++++V +L +D+EK++I+LG+K     
Sbjct: 235  FVDLGGID--GLLHITDMSWERIGHPSEMVAIDQEIEVMVLHIDREKKKIALGLKQKEGN 292

Query: 1411 NDAD 1414
              AD
Sbjct: 293  PWAD 296



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 159/399 (39%), Gaps = 66/399 (16%)

Query: 437 KSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 492
           K K   L ++ E  DR+    +  G +++  K G  V    GV  F P S++ +     P
Sbjct: 113 KRKAKKLDAWKEMMDRIKEGQVVTGTVSRKIKGGLLVDI-EGVNVFLPASQVDI---RRP 168

Query: 493 SSMY-HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL------VKLGSLVSGVVDV 545
           + +  ++G+ V+C ++    A R I +S      R  E+D       +++G +  GVV  
Sbjct: 169 ADIGDYIGRTVQCEVLKIDEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKN 228

Query: 546 VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLL 604
           +       +V   G       T+   + + H + M ++ +   E + +++ +D E   + 
Sbjct: 229 IAEFGA--FVDLGGIDGLLHITDMSWERIGHPSEMVAIDQ---EIEVMVLHIDREKKKIA 283

Query: 605 LSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 663
           L  K    N      +D    +P  +VV G V N++  G FV+    + G    S+    
Sbjct: 284 LGLKQKEGNPW----ADVDTKYPVGTVVKGSVVNVMSYGAFVKLEPGIEGLVHISEMSWT 339

Query: 664 QRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 722
           +R +  S+   +G  +   IL V+ +  +++L +KQ+                       
Sbjct: 340 RRVNHPSELVNIGDEISVVILGVDKDGQQLSLGMKQT----------------------- 376

Query: 723 QSSKHNGSELKW---VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--- 776
                   E  W    E + + +++EGKV    ++G  V  EE  D    ++        
Sbjct: 377 -------QENPWTRVAEKYPVDTIVEGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKI 429

Query: 777 ---GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
                 +E G  ++  IL V +  R + L LK +  D +
Sbjct: 430 SHPSEMLEKGQPVRCKILSVDQERRRIALGLKQLDEDPW 468



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 7/157 (4%)

Query: 367 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVKSK 425
           +V+GKV  + ++GA V+   G+  L  +  MS   +I  P +  + G  +  ++L V  +
Sbjct: 393 IVEGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKISHPSEMLEKGQPVRCKILSVDQE 452

Query: 426 RITVTHK-KTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           R  +    K L +   A  I   Y       +  G +TKI   G FV   +G++G    S
Sbjct: 453 RRRIALGLKQLDEDPWARDIPGKYQPGQ---VVSGAVTKITNFGVFVGLEDGLEGLLHIS 509

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           EL       P  +  VG  +  +I+      R+I LS
Sbjct: 510 ELADHKVENPEDVVKVGDKIDVKILRVDIDERKIGLS 546



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 163/405 (40%), Gaps = 52/405 (12%)

Query: 54  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
           ++G+ V C VL++D+ ++ I   +  L  R     +   L+ ++ G V    VK+I + G
Sbjct: 174 YIGRTVQCEVLKIDEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKNIAEFG 233

Query: 114 YILHFGLPSFTGFLPRNNLA--------ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 165
             +  G     G L   +++        E   ID +    ++ +V  IDR +K + L   
Sbjct: 234 AFVDLG--GIDGLLHITDMSWERIGHPSEMVAIDQE----IEVMVLHIDREKKKIALGLK 287

Query: 166 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 225
               +     D K         G +V   V +++  G  +       G V I  +  T  
Sbjct: 288 QKEGNPWADVDTK------YPVGTVVKGSVVNVMSYGAFVKLEPGIEGLVHISEMSWTRR 341

Query: 226 TTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDI 276
             +     N   +++  IL VD   + + L +     NP+  +  + P   +   KV ++
Sbjct: 342 VNHPSELVNIGDEISVVILGVDKDGQQLSLGMKQTQENPWTRVAEKYPVDTIVEGKVRNL 401

Query: 277 YDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 332
            +    V ++ G+  LL +     +  +S P+ +            LEK    G  VR +
Sbjct: 402 TNYGAFVELEEGIDGLLHVSDMSWTRKISHPSEM------------LEK----GQPVRCK 445

Query: 333 ILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
           IL   +    +A G+ +              +PG VV G V  + +FG  V    G++ L
Sbjct: 446 ILSVDQERRRIALGLKQLDEDPWARDIPGKYQPGQVVSGAVTKITNFGVFVGLEDGLEGL 505

Query: 392 CPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 434
             +  +++ ++  P    KVG ++  ++L   +  ++I ++ K+ 
Sbjct: 506 LHISELADHKVENPEDVVKVGDKIDVKILRVDIDERKIGLSRKRV 550


>gi|404475817|ref|YP_006707248.1| 30S ribosomal protein S1 [Brachyspira pilosicoli B2904]
 gi|404437306|gb|AFR70500.1| 30S ribosomal protein S1 [Brachyspira pilosicoli B2904]
          Length = 556

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 151/345 (43%), Gaps = 15/345 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S++K G +V+GKV  ++ FGA +Q   G+     +P+MS  +I+ P      G E  F+V
Sbjct: 189 SNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQV 248

Query: 420 LGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
           L V K KR      K L               D  I  G +T ++K G FV  Y GV+G 
Sbjct: 249 LSVDKEKRKVDLGIKQLEGDTWYKFVEEYHVGD--IIKGEVTTVKKFGAFVNVYEGVEGL 306

Query: 479 APRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 534
              S+L  +     P+    VG  ++C+I+      R++ L        P   +E D   
Sbjct: 307 IHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLKQVKDNPWDSAERDFPV 366

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
             S+   V  +    A  V+ +  G  +G        D + +   +K  IK   E + ++
Sbjct: 367 KSSVKCKVKRIFKDFA--VFELPNGL-EGICDISDF-DWMNNTVNIKDYIKENEEVEMVI 422

Query: 595 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
           + +D +   + LS K++  +  +    D ++ H  S+V+G V  II++G  V     L G
Sbjct: 423 MSIDRDKQRIKLSYKHTKESPWRVF--DKAYPH-GSIVNGTVKAIIDSGVIVSLENDLEG 479

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
           +   S+    +   L     VG+S    + +VN    RI+LS ++
Sbjct: 480 YMHISQIDLPKGETLESVLKVGESYPFVVREVNQVKRRISLSRRE 524



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 95/170 (55%), Gaps = 6/170 (3%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E + +L    IV+G VKN+   G FI L+  LD  + + N+S   + +P+     G+   
Sbjct: 186  EYLSNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERK 245

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
             +VLSV+   ++V++ +K  +  T  +     +   HVGDI+ G++  V+ +G F+ +  
Sbjct: 246  FQVLSVDKEKRKVDLGIKQLEGDTWYKF----VEEYHVGDIIKGEVTTVKKFGAFVNV-Y 300

Query: 1357 TNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  EGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLK 350



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 109/541 (20%), Positives = 203/541 (37%), Gaps = 80/541 (14%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G I + +    F+ F   V+G   R+E   +P             VK   + ++   
Sbjct: 31  VVSGKIVQFDDTDVFIDFNYKVEGKINRNEFDKEP-------------VKGEEIEAVIKG 77

Query: 514 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGTIPTEHLA- 571
           +  N  +++   R  E D  K   L+   V   TP N VV   I  G++   +       
Sbjct: 78  QDNNKGYVILSKR--EIDKRKAQDLIEDAVKNATPINGVVKEAIKGGFTVSIMGHSAFCP 135

Query: 572 -DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 628
              ++ +  +K     G EF Q  ++D + +  ++ ++  L    Q   +    S++   
Sbjct: 136 FSQIDISRGIKETDYIGKEF-QFKIIDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEG 194

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            +V G V NI + G F++    L GF         +  +       G+  +  +L V+ E
Sbjct: 195 DIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKE 254

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             ++ L +KQ                LE             +  K+VE + +G +I+G+V
Sbjct: 255 KRKVDLGIKQ----------------LE-----------GDTWYKFVEEYHVGDIIKGEV 287

Query: 749 HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 802
                FG  V+  E      H     + +H       V+ G+ ++  ILD+   ER + L
Sbjct: 288 TTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTL 347

Query: 803 SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 862
            LK V               K      A +D  V  +V   V+ + +++ V  LP     
Sbjct: 348 GLKQV---------------KDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNGLEG 392

Query: 863 IGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 921
           I   S  D+       K ++   + V   +M++       R+ L  K   E+      +A
Sbjct: 393 ICDISDFDWMNNTVNIKDYIKENEEVEMVIMSIDRDKQ--RIKLSYKHTKESPWRVFDKA 450

Query: 922 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 981
                Y  GS+V   +  I    + +       G +HI++++  K   +E++    K+G+
Sbjct: 451 -----YPHGSIVNGTVKAIIDSGVIVSLENDLEGYMHISQIDLPKGETLESV---LKVGE 502

Query: 982 T 982
           +
Sbjct: 503 S 503



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 142/325 (43%), Gaps = 52/325 (16%)

Query: 1085 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI---HEGDIVGGRISKILSGVG 1141
             VLS++KEK+ + L ++  +            D    F+   H GDI+ G ++ +     
Sbjct: 247  QVLSVDKEKRKVDLGIKQLE-----------GDTWYKFVEEYHVGDIIKGEVTTVKKF-- 293

Query: 1142 GLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            G  V +   + G +H ++L  N  V++P        F  +     G +++CK+L+++   
Sbjct: 294  GAFVNVYEGVEGLIHVSDLSWNSHVNNP------NDFVKV-----GAYLECKILDMNVPE 342

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
            R    + L L+   D    +   D         K     +D +   +  G ++ +     
Sbjct: 343  R---KLTLGLKQVKDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNG-LEGICDISD 398

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F  ++  +       N+ D   E+ E E  I        +S++   +R++++ K +    
Sbjct: 399  FDWMNNTV-------NIKDYIKENEEVEMVI--------MSIDRDKQRIKLSYKHT---K 440

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
             S   + + +  H G IV G +K +   G+ +++EN +L G  H+S++     + +E++ 
Sbjct: 441  ESPWRVFDKAYPH-GSIVNGTVKAIIDSGVIVSLEN-DLEGYMHISQIDLPKGETLESVL 498

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMK 1405
            + GE     + +V++ KRRISL  +
Sbjct: 499  KVGESYPFVVREVNQVKRRISLSRR 523


>gi|417972279|ref|ZP_12613190.1| 30S ribosomal protein S1 [Corynebacterium glutamicum S9114]
 gi|344043437|gb|EGV39130.1| 30S ribosomal protein S1 [Corynebacterium glutamicum S9114]
          Length = 486

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL++ HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 405


>gi|375101674|ref|ZP_09747937.1| ribosomal protein S1 [Saccharomonospora cyanea NA-134]
 gi|374662406|gb|EHR62284.1| ribosomal protein S1 [Saccharomonospora cyanea NA-134]
          Length = 493

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 183/406 (45%), Gaps = 62/406 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G AV   
Sbjct: 41   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDAVEAL 94

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 95   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVRGTVIEVVKG--GLIL 145

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 146  DIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKN---RNN 187

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L+   + +G V ++ + G F+ L 
Sbjct: 188  VVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG 234

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q  
Sbjct: 235  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-- 291

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G 
Sbjct: 292  ---FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGG 347

Query: 1385 KVKVKILKVDKEKRRISLGMKSSY--FKNDA--DNLQMSSEEESDE 1426
            +V VK++ +D E+RRISL +K +   F  DA  D  Q     E DE
Sbjct: 348  EVMVKVIDIDLERRRISLSLKQANEGFTPDAEFDPTQYGMAAEYDE 393



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 146/366 (39%), Gaps = 46/366 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 39  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQK 98

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 99  EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGF----LP 154

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 155 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 210

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 211 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 269

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 270 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 302

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V+ G  +   ++D+    R 
Sbjct: 303 PGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRR 362

Query: 800 VDLSLK 805
           + LSLK
Sbjct: 363 ISLSLK 368



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 151/358 (42%), Gaps = 32/358 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKED 100

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 708
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T DA F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGFTPDAEF 380


>gi|422455909|ref|ZP_16532578.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1]
 gi|315107101|gb|EFT79077.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1]
          Length = 498

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 179/408 (43%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+      F          L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEVVNVGDEFE--------ALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.9 bits (115), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 150/352 (42%), Gaps = 39/352 (11%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAELVFR 418
           G +V G V+ VD    ++      + + P   +S       FE+V  G +F    E + +
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEF----EALVQ 108

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
               K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF
Sbjct: 109 QKEDKEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGF 164

Query: 479 APRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            P S  E+      +P    +VGQ ++ +I+      +++  SRR  L       R +  
Sbjct: 165 LPASLVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFL 220

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H + +  V +P   
Sbjct: 221 HQLQKGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV 277

Query: 590 FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRF 647
             ++L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR 
Sbjct: 278 --EVLDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRV 330

Query: 648 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
              + G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 331 EDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 40.8 bits (94), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 54/291 (18%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
           G +VSG V  V  + V++ +   GY ++G IP++ L+  ++H      V+  G EF+ L+
Sbjct: 53  GDIVSGTVVKVDRDEVLLDI---GYKTEGVIPSKELS--IKHDVDPFEVVNVGDEFEALV 107

Query: 595 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
              +++   L+LS K +    A    +Q+  +      + VV G V  +++ G  V    
Sbjct: 108 QQKEDKEGRLILSKKRAQYERAWGTIEQIKEE------DGVVTGTVIEVVKGGLIVDI-- 159

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
            L GF P S     +  DL    YVGQ + + I++++     + LS +++    T +   
Sbjct: 160 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVR 216

Query: 710 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 769
           Q +FL +     LQ                 G + +G V    +FG  V       V G 
Sbjct: 217 Q-NFLHQ-----LQK----------------GQIRKGVVSSIVNFGAFVDL---GGVDGL 251

Query: 770 ITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
           +   +L+          VE G  +   +LDV      V LSLK    D ++
Sbjct: 252 VHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQ 302


>gi|50842265|ref|YP_055492.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
 gi|289426251|ref|ZP_06427997.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
 gi|289427839|ref|ZP_06429545.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
 gi|295130353|ref|YP_003581016.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
 gi|335052226|ref|ZP_08545118.1| 30S ribosomal protein S1 [Propionibacterium sp. 409-HC1]
 gi|335053985|ref|ZP_08546810.1| 30S ribosomal protein S1 [Propionibacterium sp. 434-HC2]
 gi|342212943|ref|ZP_08705668.1| 30S ribosomal protein S1 [Propionibacterium sp. CC003-HC2]
 gi|354606752|ref|ZP_09024722.1| 30S ribosomal protein S1 [Propionibacterium sp. 5_U_42AFAA]
 gi|365962490|ref|YP_004944056.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn31]
 gi|365964734|ref|YP_004946299.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn17]
 gi|365973670|ref|YP_004955229.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn33]
 gi|386023737|ref|YP_005942040.1| 30S ribosomal protein S1 [Propionibacterium acnes 266]
 gi|407935191|ref|YP_006850833.1| 30S ribosomal protein S1 [Propionibacterium acnes C1]
 gi|417929618|ref|ZP_12573002.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182]
 gi|419420987|ref|ZP_13961215.1| 30S ribosomal protein S1 [Propionibacterium acnes PRP-38]
 gi|422385153|ref|ZP_16465288.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3]
 gi|422388231|ref|ZP_16468334.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2]
 gi|422393353|ref|ZP_16473406.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1]
 gi|422396184|ref|ZP_16476215.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1]
 gi|422424231|ref|ZP_16501181.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1]
 gi|422428339|ref|ZP_16505250.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1]
 gi|422431256|ref|ZP_16508135.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2]
 gi|422432942|ref|ZP_16509810.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2]
 gi|422435485|ref|ZP_16512342.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2]
 gi|422443300|ref|ZP_16520098.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1]
 gi|422445462|ref|ZP_16522209.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1]
 gi|422448818|ref|ZP_16525543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3]
 gi|422454691|ref|ZP_16531371.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3]
 gi|422461630|ref|ZP_16538254.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1]
 gi|422474499|ref|ZP_16550963.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1]
 gi|422477823|ref|ZP_16554246.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1]
 gi|422480378|ref|ZP_16556781.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1]
 gi|422482871|ref|ZP_16559260.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1]
 gi|422485652|ref|ZP_16562014.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2]
 gi|422488901|ref|ZP_16565230.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2]
 gi|422490994|ref|ZP_16567309.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1]
 gi|422493049|ref|ZP_16569349.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1]
 gi|422496028|ref|ZP_16572315.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1]
 gi|422498768|ref|ZP_16575040.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3]
 gi|422501060|ref|ZP_16577314.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2]
 gi|422502579|ref|ZP_16578824.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2]
 gi|422506528|ref|ZP_16582751.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2]
 gi|422507862|ref|ZP_16584043.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2]
 gi|422510900|ref|ZP_16587046.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1]
 gi|422513122|ref|ZP_16589245.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2]
 gi|422515996|ref|ZP_16592105.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2]
 gi|422521619|ref|ZP_16597649.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1]
 gi|422527010|ref|ZP_16603000.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1]
 gi|422529451|ref|ZP_16605417.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1]
 gi|422534099|ref|ZP_16610023.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1]
 gi|422537621|ref|ZP_16613509.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1]
 gi|422539707|ref|ZP_16615580.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1]
 gi|422542629|ref|ZP_16618479.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1]
 gi|422545683|ref|ZP_16621513.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1]
 gi|422547568|ref|ZP_16623384.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3]
 gi|422549423|ref|ZP_16625223.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1]
 gi|422552498|ref|ZP_16628289.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3]
 gi|422556547|ref|ZP_16632301.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2]
 gi|422561230|ref|ZP_16636917.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1]
 gi|422563322|ref|ZP_16638999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1]
 gi|422568915|ref|ZP_16644533.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2]
 gi|422569692|ref|ZP_16645299.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1]
 gi|422578941|ref|ZP_16654465.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4]
 gi|50839867|gb|AAT82534.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
 gi|289153416|gb|EFD02131.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
 gi|289158971|gb|EFD07169.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
 gi|291375457|gb|ADD99311.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
 gi|313764712|gb|EFS36076.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1]
 gi|313802151|gb|EFS43383.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2]
 gi|313807266|gb|EFS45753.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2]
 gi|313809772|gb|EFS47493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1]
 gi|313813186|gb|EFS50900.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1]
 gi|313815779|gb|EFS53493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1]
 gi|313818313|gb|EFS56027.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2]
 gi|313820074|gb|EFS57788.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1]
 gi|313823117|gb|EFS60831.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2]
 gi|313825606|gb|EFS63320.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1]
 gi|313827848|gb|EFS65562.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2]
 gi|313830682|gb|EFS68396.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1]
 gi|313833902|gb|EFS71616.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1]
 gi|313838482|gb|EFS76196.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1]
 gi|314915204|gb|EFS79035.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4]
 gi|314918567|gb|EFS82398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1]
 gi|314919829|gb|EFS83660.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3]
 gi|314925498|gb|EFS89329.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3]
 gi|314931844|gb|EFS95675.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1]
 gi|314956000|gb|EFT00398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1]
 gi|314958395|gb|EFT02498.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1]
 gi|314960251|gb|EFT04353.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2]
 gi|314963061|gb|EFT07161.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1]
 gi|314968106|gb|EFT12205.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1]
 gi|314973683|gb|EFT17779.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1]
 gi|314976278|gb|EFT20373.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1]
 gi|314978238|gb|EFT22332.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2]
 gi|314983513|gb|EFT27605.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1]
 gi|314990181|gb|EFT34272.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3]
 gi|315080309|gb|EFT52285.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1]
 gi|315084567|gb|EFT56543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2]
 gi|315085905|gb|EFT57881.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3]
 gi|315088677|gb|EFT60653.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1]
 gi|315096304|gb|EFT68280.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1]
 gi|315098286|gb|EFT70262.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2]
 gi|315101023|gb|EFT72999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1]
 gi|327325939|gb|EGE67729.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2]
 gi|327330637|gb|EGE72383.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1]
 gi|327332188|gb|EGE73925.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3]
 gi|327442810|gb|EGE89464.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2]
 gi|327446180|gb|EGE92834.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2]
 gi|327447838|gb|EGE94492.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1]
 gi|327451032|gb|EGE97686.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3]
 gi|327453616|gb|EGF00271.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2]
 gi|328753065|gb|EGF66681.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1]
 gi|328753719|gb|EGF67335.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1]
 gi|328759190|gb|EGF72806.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2]
 gi|328760564|gb|EGF74132.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1]
 gi|332675193|gb|AEE72009.1| 30S ribosomal protein S1 [Propionibacterium acnes 266]
 gi|333764312|gb|EGL41709.1| 30S ribosomal protein S1 [Propionibacterium sp. 409-HC1]
 gi|333765766|gb|EGL43098.1| 30S ribosomal protein S1 [Propionibacterium sp. 434-HC2]
 gi|340768487|gb|EGR91012.1| 30S ribosomal protein S1 [Propionibacterium sp. CC003-HC2]
 gi|340773741|gb|EGR96233.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182]
 gi|353556867|gb|EHC26236.1| 30S ribosomal protein S1 [Propionibacterium sp. 5_U_42AFAA]
 gi|365739171|gb|AEW83373.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn31]
 gi|365741415|gb|AEW81109.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn17]
 gi|365743669|gb|AEW78866.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn33]
 gi|379977478|gb|EIA10803.1| 30S ribosomal protein S1 [Propionibacterium acnes PRP-38]
 gi|407903772|gb|AFU40602.1| 30S ribosomal protein S1 [Propionibacterium acnes C1]
 gi|456739550|gb|EMF64089.1| 30S ribosomal protein S1 [Propionibacterium acnes FZ1/2/0]
          Length = 498

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|418245351|ref|ZP_12871758.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 14067]
 gi|354510759|gb|EHE83681.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 14067]
          Length = 486

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL++ HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 405


>gi|319892466|ref|YP_004149341.1| 30S ribosomal protein S1p [Staphylococcus pseudintermedius HKU10-03]
 gi|317162162|gb|ADV05705.1| SSU ribosomal protein S1p [Staphylococcus pseudintermedius HKU10-03]
          Length = 394

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 99/174 (56%), Gaps = 6/174 (3%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  E ++ +    +++G V  +T+ G FI L   +D  V +S LS  +V+SPE+   IG 
Sbjct: 184  KKAELLQSIKAGDVIEGKVARLTNFGAFIDLG-GVDGLVHVSELSHEHVKSPEEVVSIGD 242

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             V  +V SVE  S+RV +++K  D+  +    I        GDIV G++ R+ S+G F+ 
Sbjct: 243  TVKVKVRSVEQDSERVSLSIK--DTLPSPFETIQ--EKYSEGDIVEGKVMRLASFGAFVE 298

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            I  + L GL H+SE+S  H+     +   G+ V+VKIL ++ E+ RISL +K++
Sbjct: 299  I-GSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 24/251 (9%)

Query: 279 QSKVVRVDRGLGLLLD------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 332
           ++KV  V +G GL++D      IP++ +ST     I D ++ E R LE K +E    + R
Sbjct: 113 EAKVTEVVKG-GLVVDVGQRGFIPASLISTD---YIEDFSDYEGRVLELKVEELEPEKNR 168

Query: 333 -ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
            IL  + +E       KA   +        +K G V++GKV  + +FGA +   GGV  L
Sbjct: 169 VILSRKAVEAEENEKKKAELLQS-------IKAGDVIEGKVARLTNFGAFIDL-GGVDGL 220

Query: 392 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 449
             +  +S   +  P +   +G  +  +V  V+  S+R++++ K TL      I   Y+E 
Sbjct: 221 VHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSEG 280

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
               I  G + ++   G FV   +G+QG    SE+       P  +   GQ V+ +I+  
Sbjct: 281 D---IVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGI 337

Query: 510 IPASRRINLSF 520
            P   RI+LS 
Sbjct: 338 NPEEERISLSI 348



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 10/170 (5%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
            E L  N  ++  V  V   G  + + ++    +  S +S  Y+E    +F    G+++  
Sbjct: 104  EKLENNETIEAKVTEVVKGGLVVDVGQR--GFIPASLISTDYIE----DFSDYEGRVLEL 157

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +V  +EP   RV ++ K  ++    + +   L ++  GD++ G++ R+ ++G FI +   
Sbjct: 158  KVEELEPEKNRVILSRKAVEAEENEKKKAELLQSIKAGDVIEGKVARLTNFGAFIDLGGV 217

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  GL HVSELS +HV + E +   G+ VKVK+  V+++  R+SL +K +
Sbjct: 218  D--GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDT 265



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 28/354 (7%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +D+K G  + G+V  ++    +V   GG    + P+  +S + +    +  KVG E+   
Sbjct: 12  NDIKEGDKITGEVQQIEDKHVVVHINGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAY 71

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           V  ++      T    L K KL    SYA   ++L         +T++ K G  V    G
Sbjct: 72  VTKIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDV--G 129

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 532
            +GF P S +  D   E  S Y  G+V++ ++    P   R+ LS   K     E++   
Sbjct: 130 QRGFIPASLISTDY-IEDFSDYE-GRVLELKVEELEPEKNRVILS--RKAVEAEENEKKK 185

Query: 533 ------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
                 +K G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 186 AELLQSIKAGDVIEGKVARLTNFGAFIDL---GGVDGLVHVSELSH--EHVKSPEEVVSI 240

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
           G     ++  ++ +S  + LS K +L +  + +    S      +V G V  +   G FV
Sbjct: 241 GDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSE---GDIVEGKVMRLASFGAFV 297

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
                L G    S+          +    GQ+V+  IL +N E  RI+LS+K +
Sbjct: 298 EIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 158/376 (42%), Gaps = 79/376 (21%)

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 150
           ++EG  +T  V+ IED   ++H     + G +P + L+    EN+   VK G  +   V 
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHINGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAYVT 73

Query: 151 -----------------RSIDRTRKVVYLSS---DPDTVSKCVTKDLKG-ISIDL----L 185
                            R ++  +   YL     + +T+   VT+ +KG + +D+     
Sbjct: 74  KIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDVGQRGF 133

Query: 186 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 245
           +P  ++ST           +   + + G V    ++   P  N             R++ 
Sbjct: 134 IPASLISTD---------YIEDFSDYEGRVLELKVEELEPEKN-------------RVIL 171

Query: 246 VDPTSRAVGLTLN----PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 301
              + +AV    N      LL +      +K GD+  + KV R+    G  +D+      
Sbjct: 172 ---SRKAVEAEENEKKKAELLQS------IKAGDVI-EGKVARL-TNFGAFIDLGGVD-- 218

Query: 302 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK---ASAFEGLVFT 358
               V +S+++ E V+  E+    G  V+V++          +  +K    S FE +   
Sbjct: 219 --GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEK 276

Query: 359 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +S+   G +V+GKV+ + SFGA V+   G++ L  +  +S   I  PG+  + G  +  +
Sbjct: 277 YSE---GDIVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVK 333

Query: 419 VLGV--KSKRITVTHK 432
           +LG+  + +RI+++ K
Sbjct: 334 ILGINPEEERISLSIK 349



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 112/294 (38%), Gaps = 49/294 (16%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 591
           +K G  ++G V  +    VVV++    Y+ G IP   L+  H+E+A     V+K G E  
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHINGGKYN-GIIPISQLSTYHVENAN---EVVKVGDEIG 69

Query: 592 QLLVL-----DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
             +       +NE+ + +LS +   +   Q        +  N  +   V  +++ G  V 
Sbjct: 70  AYVTKIEVDEENETGSYILSKRK--LEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVD 127

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
              R  GF P S        D S   Y G+ +   + ++  E  R+ LS K       + 
Sbjct: 128 VGQR--GFIPASLISTDYIEDFSD--YEGRVLELKVEELEPEKNRVILSRKAVEAEENE- 182

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
                    ++K  +LQS K              G VIEGKV    +FG  +       V
Sbjct: 183 ---------KKKAELLQSIK-------------AGDVIEGKVARLTNFGAFIDL---GGV 217

Query: 767 YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
            G +   +L+   V+S       G  ++  +  V +    V LS+K      F 
Sbjct: 218 DGLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFE 271


>gi|387503162|ref|YP_005944391.1| 30S ribosomal protein S1 [Propionibacterium acnes 6609]
 gi|335277207|gb|AEH29112.1| 30S ribosomal protein S1 [Propionibacterium acnes 6609]
          Length = 498

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYLG--------- 183

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 47.4 bits (111), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YLGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|325068715|ref|ZP_08127388.1| 30S ribosomal protein S1 [Actinomyces oris K20]
 gi|326773413|ref|ZP_08232696.1| ribosomal protein S1 [Actinomyces viscosus C505]
 gi|343522613|ref|ZP_08759579.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 175 str. F0384]
 gi|326636643|gb|EGE37546.1| ribosomal protein S1 [Actinomyces viscosus C505]
 gi|343402022|gb|EGV14528.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 175 str. F0384]
          Length = 484

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 187/411 (45%), Gaps = 64/411 (15%)

Query: 1008 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1057
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 203  -LQTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 261  EVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 33/357 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+      AS
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPAS 373


>gi|320531284|ref|ZP_08032260.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136487|gb|EFW28459.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 484

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 187/411 (45%), Gaps = 64/411 (15%)

Query: 1008 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1057
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 203  -LQTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 261  EVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 151/349 (43%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365


>gi|329946785|ref|ZP_08294197.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526596|gb|EGF53609.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 484

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 187/411 (45%), Gaps = 64/411 (15%)

Query: 1008 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1057
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 203  -LQTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 261  EVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.4 bits (111), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 33/357 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+      AS
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPAS 373


>gi|227496060|ref|ZP_03926369.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434]
 gi|226834388|gb|EEH66771.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434]
          Length = 483

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 188/411 (45%), Gaps = 64/411 (15%)

Query: 1008 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1057
            P+ + V++IGS + +    D ++     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETMKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 203  -LQTLQKGQVRTGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 261  EVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL++ HV+  E + + GE+V VK++ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHISELAQRHVEVPEQVVKVGEEVFVKVIDIDLERRRISLSLKQA 365



 Score = 48.5 bits (114), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 152/349 (43%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERVKEE-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 317 IEGLVHISELAQRHVEVPEQVVKVGEEVFVKVIDIDLERRRISLSLKQA 365


>gi|104773910|ref|YP_618890.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            ATCC 11842]
 gi|103422991|emb|CAI97673.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            ATCC 11842]
          Length = 401

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 135/265 (50%), Gaps = 45/265 (16%)

Query: 1172 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1226
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1227 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1260
                    T++D P K      H E IE+            L    +V+G V  +T  G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGS 212

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
              Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HVSE++  HVD    + 
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEIAYKHVDKPSDVL 326

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMK 1405
            + G+ VKVK+L +D  KRRISL +K
Sbjct: 327  KVGQDVKVKVLNIDPSKRRISLSIK 351



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 279 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 335
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 395
             H E +     +  AFE +    S +  G VV+G+V  +  FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTDFGSFVDI-GGVDGLVHIS 226

Query: 396 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 453
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 454 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 511
             +  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDP 341

Query: 512 ASRRINLSF 520
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 34/199 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD+V GR+S++     G  V IG  + G VH +E+    V  P         D L     
Sbjct: 197  GDVVEGRVSRLTD--FGSFVDIG-GVDGLVHISEISYKHVDKP--------SDVLK---V 242

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +                  P    +    L+  
Sbjct: 243  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATSSLNEG 282

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             +++G VK++T+ G F+ ++  +   V +S ++  +V+ P     +G+ V  +VL+++P 
Sbjct: 283  DVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPS 342

Query: 1306 SKRVEVTLKTSDSRTASQS 1324
             +R+ +++K  D   AS S
Sbjct: 343  KRRISLSIKQVDPENASSS 361



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 146/362 (40%), Gaps = 38/362 (10%)

Query: 403 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 462
           VK G  FKV    V R  G   +        T VK + A      +  +     G +T  
Sbjct: 65  VKLGDTFKV---YVVRRAGGDKENGDFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSS 121

Query: 463 EKHGCFVRFYNGVQGFAPRSELG--LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
            + G  V    G +GF P S +        +P    ++G+ +K +I    PA  R+ LS 
Sbjct: 122 VRGGLLVDV--GTRGFLPASLISNRFVSDLKP----YIGKTIKVKITEIDPAKNRLILSH 175

Query: 521 --MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 574
             +++  R    + V     +G +V G V  +T     V +   G   G +    ++   
Sbjct: 176 KELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSFVDI---GGVDGLVHISEIS--Y 230

Query: 575 EHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 633
           +H      V+K G +   +++ +DN+   + LS K +  +  +Q     S ++   V+ G
Sbjct: 231 KHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQA---TSSLNEGDVIEG 287

Query: 634 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            V ++   G FV     + G    S+         S    VGQ V+  +L+++    RI+
Sbjct: 288 EVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSKRRIS 347

Query: 694 LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV----EGFIIGSVIEGKVH 749
           LS+KQ    +  +S         ++    +SS +N    K++     GF +G +I  ++ 
Sbjct: 348 LSIKQVDPENASSS--------NDRPRARRSSNNNAFARKYMNNDDNGFSLGDMIGDQLK 399

Query: 750 ES 751
            S
Sbjct: 400 NS 401


>gi|19552573|ref|NP_600575.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|62390242|ref|YP_225644.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|21324127|dbj|BAB98752.1| Ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|41325579|emb|CAF21368.1| 30S RIBOSOMAL PROTEIN S1 [Corynebacterium glutamicum ATCC 13032]
 gi|385143485|emb|CCH24524.1| 30S ribosomal protein S1 [Corynebacterium glutamicum K051]
          Length = 486

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  EVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL++ HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLEVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLEVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 405


>gi|119717213|ref|YP_924178.1| 30S ribosomal protein S1 [Nocardioides sp. JS614]
 gi|119537874|gb|ABL82491.1| SSU ribosomal protein S1P [Nocardioides sp. JS614]
          Length = 490

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 16   VAVNDIGSEADFLAAIDETIKYFNDGDIVAGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 75

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +PSE+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 76   KHDVDPSEV------VAVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 122

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 123  QVKEEDGVVEGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVG--------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S       T             
Sbjct: 172  ------QTLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRHGFLTQ------------ 210

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 211  -LQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 268

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 269  DVDMDRERVSLSLKAT-----QEDPWQHFARTHQIGQIVPGKVTKLVPFGAFVRVEE-GI 322

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HV+  E + +  + V VKI+ +D E+RRISL +K +
Sbjct: 323  EGLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQA 370



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 146/354 (41%), Gaps = 29/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 41  GDIVAGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVAVGDEVEALVLQKED 100

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E     +  G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEQVKEEDG--VVEGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 157 LVEMRRVRDLQP----YVGQTLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHGFLTQLQ 212

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 213 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 266

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  Q     A       +V G V  ++  G FVR    + 
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWQHF---ARTHQIGQIVPGKVTKLVPFGAFVRVEEGIE 323

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
           G    S+  +       +   V   V   I+D++ E  RI+LSLKQ+  ++T A
Sbjct: 324 GLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQANETATAA 377


>gi|418036541|ref|ZP_12674957.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
            subsp. bulgaricus CNCM I-1519]
 gi|354687591|gb|EHE87671.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
            subsp. bulgaricus CNCM I-1519]
          Length = 401

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 134/265 (50%), Gaps = 45/265 (16%)

Query: 1172 YDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG--MSSTNSSDLS--- 1226
            YD+ Q D    ++EG+ ++ KV   + +VRG   V++  R  L    +S+   SDL    
Sbjct: 101  YDKLQKD----FEEGKTIEGKV---TSSVRGGLLVDVGTRGFLPASLISNRFVSDLKPYI 153

Query: 1227 --------TDVDTPGK------HLEKIED------------LSPNMIVQGYVKNVTSKGC 1260
                    T++D P K      H E IE+            L    +V+G V  +T  G 
Sbjct: 154  GKTIKVKITEID-PAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGS 212

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++    R+ +++K ++   
Sbjct: 213  FVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSP 271

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
              Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HVSE++  HVD    + 
Sbjct: 272  FEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHVSEIAYKHVDKPSDVL 326

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMK 1405
              G KVKVK+L +D  KRRISL +K
Sbjct: 327  TVGPKVKVKVLNIDPSKRRISLSIK 351



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 20/249 (8%)

Query: 279 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 335
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 395
             H E +     +  AFE +    S +  G VV+G+V  +  FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTDFGSFVDI-GGVDGLVHIS 226

Query: 396 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 453
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 454 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 511
             +  G +  +   G FV   +G+QG    SE+      +PS +  VG  VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDP 341

Query: 512 ASRRINLSF 520
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 34/199 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD+V GR+S++     G  V IG  + G VH +E+    V  P         D L     
Sbjct: 197  GDVVEGRVSRLTD--FGSFVDIG-GVDGLVHISEISYKHVDKP--------SDVLK---V 242

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +                  P    +    L+  
Sbjct: 243  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATSSLNEG 282

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             +++G VK++T+ G F+ ++  +   V +S ++  +V+ P     +G  V  +VL+++P 
Sbjct: 283  DVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPS 342

Query: 1306 SKRVEVTLKTSDSRTASQS 1324
             +R+ +++K  D   AS S
Sbjct: 343  KRRISLSIKQVDPENASSS 361



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 142/365 (38%), Gaps = 53/365 (14%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 529
           GV+G   R +   D          +G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 530 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 587 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 645
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  + + G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSFV 214

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 766 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 818
           + G +   ++A   V+        G  ++  +L++  ++R + LS+K V  +    +N  
Sbjct: 305 IQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVDPENASSSNDR 364

Query: 819 RQAQK 823
            +A++
Sbjct: 365 PRARR 369


>gi|386319260|ref|YP_006015423.1| 30S ribosomal protein S1 [Staphylococcus pseudintermedius ED99]
 gi|323464431|gb|ADX76584.1| ribosomal protein S1 [Staphylococcus pseudintermedius ED99]
          Length = 394

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 99/174 (56%), Gaps = 6/174 (3%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  E ++ +    +++G V  +T+ G FI L   +D  V +S LS  +V+SPE+   IG 
Sbjct: 184  KKAELLQSIKAGDVIEGKVARLTNFGAFIDLG-GVDGLVHVSELSHEHVKSPEEVVSIGD 242

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             V  +V SVE  S+RV +++K  D+  +    I        GDIV G++ R+ S+G F+ 
Sbjct: 243  TVKVKVRSVEQDSERVSLSIK--DTLPSPFETIQ--EKYSEGDIVEGKVMRLASFGAFVE 298

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            I  + L GL H+SE+S  H+     +   G+ V+VKIL ++ E+ RISL +K++
Sbjct: 299  I-GSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 24/251 (9%)

Query: 279 QSKVVRVDRGLGLLLD------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 332
           ++KV  V +G GL++D      IP++ +ST     I D ++ E R LE K +E    + R
Sbjct: 113 EAKVTEVVKG-GLVVDVGQRGFIPASLISTDY---IEDFSDYEGRVLELKVEELEPEKNR 168

Query: 333 -ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
            IL  + +E       KA   +        +K G V++GKV  + +FGA +   GGV  L
Sbjct: 169 VILSRKAVEAEENEKKKAELLQS-------IKAGDVIEGKVARLTNFGAFIDL-GGVDGL 220

Query: 392 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 449
             +  +S   +  P +   +G  +  +V  V+  S+R++++ K TL      I   Y+E 
Sbjct: 221 VHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSEG 280

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
               I  G + ++   G FV   +G+QG    SE+       P  +   GQ V+ +I+  
Sbjct: 281 D---IVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGI 337

Query: 510 IPASRRINLSF 520
            P   RI+LS 
Sbjct: 338 NPEEERISLSI 348



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 10/170 (5%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
            E L  N  ++  V  V   G  + + ++    +  S +S  Y+E    +F    G+++  
Sbjct: 104  EKLENNETIEAKVTEVVKGGLVVDVGQR--GFIPASLISTDYIE----DFSDYEGRVLEL 157

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +V  +EP   RV ++ K  ++    + +   L ++  GD++ G++ R+ ++G FI +   
Sbjct: 158  KVEELEPEKNRVILSRKAVEAEENEKKKAELLQSIKAGDVIEGKVARLTNFGAFIDLGGV 217

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  GL HVSELS +HV + E +   G+ VKVK+  V+++  R+SL +K +
Sbjct: 218  D--GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDT 265



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 28/354 (7%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +D+K G  + G+V  ++    +V   GG    + P+  +S + +    +  KVG E+   
Sbjct: 12  NDIKEGDKITGEVQQIEDKHVVVHVNGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAY 71

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           V  ++      T    L K KL    SYA   ++L         +T++ K G  V    G
Sbjct: 72  VTKIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDV--G 129

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 532
            +GF P S +  D   E  S Y  G+V++ ++    P   R+ LS   K     E++   
Sbjct: 130 QRGFIPASLISTDY-IEDFSDYE-GRVLELKVEELEPEKNRVILS--RKAVEAEENEKKK 185

Query: 533 ------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
                 +K G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 186 AELLQSIKAGDVIEGKVARLTNFGAFIDL---GGVDGLVHVSELSH--EHVKSPEEVVSI 240

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
           G     ++  ++ +S  + LS K +L +  + +    S      +V G V  +   G FV
Sbjct: 241 GDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSE---GDIVEGKVMRLASFGAFV 297

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
                L G    S+          +    GQ+V+  IL +N E  RI+LS+K +
Sbjct: 298 EIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 158/376 (42%), Gaps = 79/376 (21%)

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 150
           ++EG  +T  V+ IED   ++H     + G +P + L+    EN+   VK G  +   V 
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHVNGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAYVT 73

Query: 151 -----------------RSIDRTRKVVYLSS---DPDTVSKCVTKDLKG-ISIDL----L 185
                            R ++  +   YL     + +T+   VT+ +KG + +D+     
Sbjct: 74  KIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDVGQRGF 133

Query: 186 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 245
           +P  ++ST           +   + + G V    ++   P  N             R++ 
Sbjct: 134 IPASLISTD---------YIEDFSDYEGRVLELKVEELEPEKN-------------RVIL 171

Query: 246 VDPTSRAVGLTLN----PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 301
              + +AV    N      LL +      +K GD+  + KV R+    G  +D+      
Sbjct: 172 ---SRKAVEAEENEKKKAELLQS------IKAGDVI-EGKVARL-TNFGAFIDLGGVD-- 218

Query: 302 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK---ASAFEGLVFT 358
               V +S+++ E V+  E+    G  V+V++          +  +K    S FE +   
Sbjct: 219 --GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEK 276

Query: 359 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +S+   G +V+GKV+ + SFGA V+   G++ L  +  +S   I  PG+  + G  +  +
Sbjct: 277 YSE---GDIVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVK 333

Query: 419 VLGV--KSKRITVTHK 432
           +LG+  + +RI+++ K
Sbjct: 334 ILGINPEEERISLSIK 349



 Score = 41.6 bits (96), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 112/294 (38%), Gaps = 49/294 (16%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 591
           +K G  ++G V  +    VVV+V    Y+ G IP   L+  H+E+A     V+K G E  
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHVNGGKYN-GIIPISQLSTYHVENAN---EVVKVGDEIG 69

Query: 592 QLLVL-----DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
             +       +NE+ + +LS +   +   Q        +  N  +   V  +++ G  V 
Sbjct: 70  AYVTKIEVDEENETGSYILSKRK--LEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVD 127

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
              R  GF P S        D S   Y G+ +   + ++  E  R+ LS K       + 
Sbjct: 128 VGQR--GFIPASLISTDYIEDFSD--YEGRVLELKVEELEPEKNRVILSRKAVEAEENE- 182

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
                    ++K  +LQS K              G VIEGKV    +FG  +       V
Sbjct: 183 ---------KKKAELLQSIK-------------AGDVIEGKVARLTNFGAFIDL---GGV 217

Query: 767 YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
            G +   +L+   V+S       G  ++  +  V +    V LS+K      F 
Sbjct: 218 DGLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFE 271


>gi|170289126|ref|YP_001739364.1| RNA-binding S1 domain-containing protein [Thermotoga sp. RQ2]
 gi|170176629|gb|ACB09681.1| RNA binding S1 domain protein [Thermotoga sp. RQ2]
          Length = 543

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 116/521 (22%), Positives = 219/521 (42%), Gaps = 59/521 (11%)

Query: 322 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 381
           +YK G  + ++IL   + E       +    + L     D +    VK +V++    G  
Sbjct: 60  EYKVGENLTLQILNLNYEERSILSERRPVLRKTLEELRKDYEEKKPVKARVVSQTKGGYN 119

Query: 382 VQFPGGVKALCPLPH--MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSK 439
           V   G V A  P  H  +   + + P K+ +V   ++  ++  K     V  ++ L   K
Sbjct: 120 VLLKGVVSAFLPGSHSLLRRNDPI-PEKEIEV---IILEMVQTKRGPRIVVSRRALQDKK 175

Query: 440 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 499
           +    S  +  D  I  G +  I   G  V    GV+GF PRSEL  D    P  +   G
Sbjct: 176 IEEFFSEKKVGD--IVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTRISPEDIVKPG 233

Query: 500 QVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI 556
           Q +  +I+      + + LS    M  P    E+    +G +V+G  +V++ +    +V 
Sbjct: 234 QNITAKIIELDKEKKNVILSLKRLMPDPWEKVEEKY-PVGKVVNG--EVISIHPFGFFVR 290

Query: 557 AKGYSKGTIPTEHL-----ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 611
            +   +G +P   +        LE       ++K      +++ +D E+  L LS K + 
Sbjct: 291 LEPGVEGLVPRSEVFWGNTRKSLEEVVSAGDLVKV-----EVINVDKENRKLTLSYKKAK 345

Query: 612 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 671
            +  + +       + N+VV G V  II+ G FV     + GF P S+    +  +  + 
Sbjct: 346 GDPWENI---EDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEI 402

Query: 672 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 731
             +G+ V+  IL ++ E  +ITLS+K++  +  + +  +           L++       
Sbjct: 403 LKIGEKVKVKILKIDKENRKITLSIKRTQENPWERALKE-----------LETD------ 445

Query: 732 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL 791
                     S++ G + +  + GVVV  EE+ D+ GF+ ++ L  +  E+G V+   +L
Sbjct: 446 ----------SIVSGTIKKIVNSGVVVEVEEY-DLEGFVPNNHLL-SEPETGKVLNLVVL 493

Query: 792 DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK 832
            +   E    L  + +  ++  E   N +  KK  ++E+S+
Sbjct: 494 RIDPDEV---LGGRMILSEKRYEERKNIEEYKKMVEKESSQ 531



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 44/299 (14%)

Query: 1114 ISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
            + +  ++ F  E   GDIV G +  I +   G+ V+I   + G +  +EL          
Sbjct: 171  LQDKKIEEFFSEKKVGDIVEGTVKGISNA--GVEVEISEGVRGFIPRSEL---------- 218

Query: 1171 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1230
             YD  +  P      GQ +  K++E+ +  +   +V LSL+             L  D  
Sbjct: 219  SYD-TRISPEDIVKPGQNITAKIIELDKEKK---NVILSLKR------------LMPD-- 260

Query: 1231 TPGKHLEKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKE 1288
                  EK+E+  P   +V G V ++   G F+ L   ++  V  S +  G   +S E+ 
Sbjct: 261  ----PWEKVEEKYPVGKVVNGEVISIHPFGFFVRLEPGVEGLVPRSEVFWGNTRKSLEEV 316

Query: 1289 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1348
               G LV   V++V+  ++++ ++ K +        E       +V ++V G++  +   
Sbjct: 317  VSAGDLVKVEVINVDKENRKLTLSYKKAKGDPWENIE----DRYNVNNVVTGKVTGIIKQ 372

Query: 1349 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            G F+ +E   + G   VSE+S   +D    I + GEKVKVKILK+DKE R+I+L +K +
Sbjct: 373  GAFVELEE-GVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIKRT 430


>gi|365827220|ref|ZP_09369084.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 849 str. F0330]
 gi|365265226|gb|EHM94999.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 849 str. F0330]
          Length = 484

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 187/411 (45%), Gaps = 64/411 (15%)

Query: 1008 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1057
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 202

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 203  -LQTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 261  EVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 315

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 316  -GIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 48.1 bits (113), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 33/357 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+      AS
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPAS 373


>gi|433449333|ref|ZP_20412197.1| 30S ribosomal protein S1 [Weissella ceti NC36]
 gi|429538847|gb|ELA06885.1| 30S ribosomal protein S1 [Weissella ceti NC36]
          Length = 416

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 139/281 (49%), Gaps = 38/281 (13%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GDIV   +++++ G  GLVV +   + G V  + ++N  V D            L+ Y +
Sbjct: 113  GDIVEAPVTQVVKG--GLVVDVA-GVRGFVPASMIENRFVQD------------LNQY-K 156

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ ++ K++EI  T      + LS R  L+   S   S +               +L+  
Sbjct: 157  GQTIRAKIIEIDPT---ESRLILSRRDVLNEERSEALSRI-------------FNELAEG 200

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G  V  ++L ++P 
Sbjct: 201  DVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPE 259

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
             +R+ +++K +       +      N   G ++ G +KRV  +G F+ +    + GL HV
Sbjct: 260  KERISLSIKATQPGPWEAA----AENAPEGTVLEGTVKRVVDFGAFVEV-FPGVEGLVHV 314

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            S+++  HV+N   +  AG+KV VK+L+V+ +K+R+SL +K+
Sbjct: 315  SQIAHKHVNNPADVLTAGDKVNVKVLEVNPDKQRLSLSIKA 355



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1349
            G+ +  +++ ++P   R+ ++ +   ++ R+ + S I N   L  GD+V G++ R+ ++G
Sbjct: 157  GQTIRAKIIEIDPTESRLILSRRDVLNEERSEALSRIFN--ELAEGDVVEGKVARMTNFG 214

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             FI +   +  GL HVSE+S D V     +   G+ VKVKIL +D EK RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPEKERISLSIKAT 270



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 269 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 328
           S    GDI  ++ V +V +G GL++D+         +V  S +    V+ L  +YK G  
Sbjct: 108 SKFNAGDIV-EAPVTQVVKG-GLVVDV----AGVRGFVPASMIENRFVQDL-NQYK-GQT 159

Query: 329 VRVRILGFRHLEGLAT----GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 384
           +R +I+     E         +L     E L    +++  G VV+GKV  + +FGA +  
Sbjct: 160 IRAKIIEIDPTESRLILSRRDVLNEERSEALSRIFNELAEGDVVEGKVARMTNFGAFIDL 219

Query: 385 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
            GGV  L  +  +S   + +P     VG ++  ++LG+  + +RI+++ K T      A 
Sbjct: 220 -GGVDGLVHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPEKERISLSIKATQPGPWEAA 278

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
             +  E T   +  G + ++   G FV  + GV+G    S++       P+ +   G  V
Sbjct: 279 AENAPEGT---VLEGTVKRVVDFGAFVEVFPGVEGLVHVSQIAHKHVNNPADVLTAGDKV 335

Query: 503 KCRIMSSIPASRRINLSF 520
             +++   P  +R++LS 
Sbjct: 336 NVKVLEVNPDKQRLSLSI 353



 Score = 47.8 bits (112), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 153/390 (39%), Gaps = 64/390 (16%)

Query: 440 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--VQGFAPRSELGLDPGCEPSSMYH 497
           LA L S AE     +  G +  I+ +   +    G  V+G  P  EL  D   + + +  
Sbjct: 9   LAALDSVAEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPMRELTSDRDADVNDLVK 68

Query: 498 VGQVVKCRIMSSIPASRRINLSFMMKPTRVS-----EDDLVKL--GSLVSGVVDVVTPNA 550
           VG V+   ++S+I  S +   S+++   R+      E+   K   G +V   V  V    
Sbjct: 69  VGDVIDLVVVSTI-GSDKEGGSYLLSKRRLEARRAWEEIASKFNAGDIVEAPVTQVVKGG 127

Query: 551 VVVYVIA-KGYSKGTIPTEHLADHLEH---ATVMKSVIKPGYEFDQLLVLDNESSNLLLS 606
           +VV V   +G+   ++        L      T+   +I+          +D   S L+LS
Sbjct: 128 LVVDVAGVRGFVPASMIENRFVQDLNQYKGQTIRAKIIE----------IDPTESRLILS 177

Query: 607 AKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
            +  ++N   ++ L    + +    VV G V  +   G F+  LG + G    S+    +
Sbjct: 178 -RRDVLNEERSEALSRIFNELAEGDVVEGKVARMTNFGAFID-LGGVDGLVHVSEISHDR 235

Query: 665 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS 724
            +  S    VG  V+  IL ++ E  RI+LS+K +     +A+                 
Sbjct: 236 VSQPSDVLAVGDDVKVKILGLDPEKERISLSIKATQPGPWEAA----------------- 278

Query: 725 SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------G 777
              N  E         G+V+EG V    DFG  V  E    V G +   Q+A        
Sbjct: 279 -AENAPE---------GTVLEGTVKRVVDFGAFV--EVFPGVEGLVHVSQIAHKHVNNPA 326

Query: 778 ATVESGSVIQAAILDVAKAERLVDLSLKTV 807
             + +G  +   +L+V   ++ + LS+K +
Sbjct: 327 DVLTAGDKVNVKVLEVNPDKQRLSLSIKAL 356



 Score = 44.7 bits (104), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 153/360 (42%), Gaps = 43/360 (11%)

Query: 360 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           ++VK G VVKG+V+A+D +   IV   G GV+ + P+  ++           KVG  +  
Sbjct: 16  AEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPMRELTSDRDADVNDLVKVGDVIDL 75

Query: 418 RVLGVKSKRITVTHKKT-----LVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCF 468
            V+       T+   K      L K +L    ++ E   +     I    +T++ K G  
Sbjct: 76  VVVS------TIGSDKEGGSYLLSKRRLEARRAWEEIASKFNAGDIVEAPVTQVVKGGLV 129

Query: 469 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 528
           V    GV+GF P S +  +   +  + Y  GQ ++ +I+   P   R+ LS         
Sbjct: 130 VDVA-GVRGFVPASMI-ENRFVQDLNQYK-GQTIRAKIIEIDPTESRLILSRRDVLNEER 186

Query: 529 EDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK- 581
            + L ++      G +V G V  +T     + +   G   G +   H+++ + H  V + 
Sbjct: 187 SEALSRIFNELAEGDVVEGKVARMTNFGAFIDL---GGVDGLV---HVSE-ISHDRVSQP 239

Query: 582 -SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCN 637
             V+  G +   ++L LD E   + LS     I + Q  P +A+  +    +V+ G V  
Sbjct: 240 SDVLAVGDDVKVKILGLDPEKERISLS-----IKATQPGPWEAAAENAPEGTVLEGTVKR 294

Query: 638 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
           +++ G FV     + G    S+       + +     G  V   +L+VN +  R++LS+K
Sbjct: 295 VVDFGAFVEVFPGVEGLVHVSQIAHKHVNNPADVLTAGDKVNVKVLEVNPDKQRLSLSIK 354


>gi|225022623|ref|ZP_03711815.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii ATCC
            33806]
 gi|305682064|ref|ZP_07404868.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
 gi|224944531|gb|EEG25740.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii ATCC
            33806]
 gi|305658537|gb|EFM48040.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
          Length = 493

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 185/412 (44%), Gaps = 64/412 (15%)

Query: 1007 KPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFI- 1059
            K   + +++IGS   F    D +I     G  V G V KVD++  LL I    +  + + 
Sbjct: 5    KAPQVAINDIGSPEEFLAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPVR 64

Query: 1060 ---LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1116
               +    +P E+ E      +G  +   VL+  KE K  RL+L   +        + + 
Sbjct: 65   ELSIKHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAW 111

Query: 1117 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1176
              ++    + + V G + +++ G  GL++ IG   +      E++ +   DP  G     
Sbjct: 112  GAIEELKEKDEAVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----- 164

Query: 1177 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1236
                      Q ++ K++E+ +      +V LS R+ L+   S   S+            
Sbjct: 165  ----------QQIEAKIIELDKQRN---NVVLSRRAWLEQTQSEVRSEF----------- 200

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
              +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V 
Sbjct: 201  --LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVSVGDEVT 257

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1355
              VL V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E
Sbjct: 258  VEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVE 312

Query: 1356 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
               + GL H+SEL++ HV+  + +  A E   VK++ +D E+RRISL +K +
Sbjct: 313  E-GIEGLVHISELAQRHVEVPDQVVNANEDAMVKVIDIDLERRRISLSLKQA 363



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVSVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  + +  +    +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNANEDAMVKVIDIDLERRRISLSL 360



 Score = 47.8 bits (112), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P+  +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPVRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP-- 480
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P  
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEAVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 481 ----RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
               R    LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H + + SV   G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVSV---GDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +     +     ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNANEDAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI ++     D  I  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 23  AIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPVRELSIKHDVDPDEVVEVGD 82

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            +   +++      R+ LS      +    + ++L +    V+G V  V    +++ +  
Sbjct: 83  QIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEAVTGTVIEVVKGGLILDIGL 142

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G + + +++ LD + +N++LS +  L  +  
Sbjct: 143 RGFLPASL--------VEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQS 194

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 195 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVSVG 253

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 254 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRVFARTH----------------------- 289

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-SGSVIQA------ 788
               +G ++ GKV +   FG  V  EE   + G +   +LA   VE    V+ A      
Sbjct: 290 ---AVGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAQRHVEVPDQVVNANEDAMV 344

Query: 789 AILDVAKAERLVDLSLK 805
            ++D+    R + LSLK
Sbjct: 345 KVIDIDLERRRISLSLK 361


>gi|86739768|ref|YP_480168.1| 30S ribosomal protein S1 [Frankia sp. CcI3]
 gi|86566630|gb|ABD10439.1| SSU ribosomal protein S1P [Frankia sp. CcI3]
          Length = 492

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 195/433 (45%), Gaps = 71/433 (16%)

Query: 1004 LSIKPSMLT----VSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH- 1052
            ++I PS  T    V++IGS   F    D +I     G  V G + KVD +  LL I    
Sbjct: 13   VTISPSPTTPQVAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGIIVKVDRDEVLLDIGYKT 72

Query: 1053 ---LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1109
               + ++   +    +P E+        +G  V   VL   KE K  RL+L   +     
Sbjct: 73   EGVIPSRELSIKHDVDPHEV------VSVGDHVEALVL--QKEDKEGRLILSKKR----- 119

Query: 1110 KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1169
               + +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P 
Sbjct: 120  AQYERAWGTIEKLKDEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPY 177

Query: 1170 SGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1229
             G +               ++ K++E+ +      +V LS R+ L+   S   S+     
Sbjct: 178  VGRE---------------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF---- 215

Query: 1230 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1289
                     +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +  
Sbjct: 216  ---------LAQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVV 265

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESY 1348
             +G+ V   VL V+   +RV ++LK +      Q      +  H +G +V G++ ++  +
Sbjct: 266  EVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPF 320

Query: 1349 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1408
            G F+ ++   + GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K + 
Sbjct: 321  GAFVRVDE-GIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA- 378

Query: 1409 FKNDADNLQMSSE 1421
              N+A  L +  E
Sbjct: 379  --NEATGLAVDGE 389



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDKE 110

Query: 514 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKDEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 222

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 804 LK 805
           LK
Sbjct: 375 LK 376



 Score = 40.8 bits (94), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKED 108

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKD-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 220

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA 378


>gi|427391803|ref|ZP_18886027.1| 30S ribosomal protein S1 [Actinobaculum massiliae ACS-171-V-Col2]
 gi|425731770|gb|EKU94583.1| 30S ribosomal protein S1 [Actinobaculum massiliae ACS-171-V-Col2]
          Length = 497

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 183/406 (45%), Gaps = 56/406 (13%)

Query: 1009 SMLTVSEIGSK-LLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1062
            S + V++IG +  L    D +I     G  V G + KVD++  LL I    +  +     
Sbjct: 12   SEIAVNDIGDEEALLAAVDKTIKYFNDGDIVEGTIVKVDHDEVLLDIGYKTEGVI----P 67

Query: 1063 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1122
            + E S   +      +    T   L + KE K  RL+L   +        + +   ++  
Sbjct: 68   SKELSIKHDVDPDDVVEVGDTIEALVLQKEDKEGRLLLSKKR-----AQYERAWKQIEKI 122

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
              E  +V G + +++ G  GL++ IG   +      E++ +    P  G +         
Sbjct: 123  KEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE--------- 171

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
                  ++ KV+E+ +      +V LS R+ L+   S   +D              +  L
Sbjct: 172  ------LEAKVIELDKNRN---NVVLSRRAWLEETQSQVRADF-------------LAGL 209

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V
Sbjct: 210  HKGQIREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGQKVNVEVLDV 268

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVG 1361
            +   +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ +E+  + G
Sbjct: 269  DLDRERVSLSLKAT-----QEDPWQSFARTHAIGQVVPGKVTKIVPFGAFVRVED-GIEG 322

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L H+SEL+  HVD  + + + GE + VK++ +D ++RRISL +K +
Sbjct: 323  LVHISELASHHVDTPDEVVKVGEDIFVKVIDIDLDRRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G + +G V ++ +FGA V   GGV  L  +  +S   I  P +   VG ++   VL V  
Sbjct: 212 GQIREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGQKVNVEVLDVDL 270

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T      +   ++A      +  G +TKI   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQSFARTHAIGQ---VVPGKVTKIVPFGAFVRVEDGIEGLVHIS 327

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           EL       P  +  VG+ +  +++      RRI+LS 
Sbjct: 328 ELASHHVDTPDEVVKVGEDIFVKVIDIDLDRRRISLSL 365



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 38/222 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           +++ LD   +N++LS +  L  +  Q+ +D  + +H   +  G V +I+  G FV  LG 
Sbjct: 175 KVIELDKNRNNVVLSRRAWLEETQSQVRADFLAGLHKGQIREGVVSSIVNFGAFVD-LGG 233

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+         S+   VGQ V   +LDV+ +  R++LSLK +       SF +
Sbjct: 234 VDGLVHVSELSWKHIDHPSEVVTVGQKVNVEVLDVDLDRERVSLSLK-ATQEDPWQSFAR 292

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
            H                           IG V+ GKV +   FG  V  E+   + G +
Sbjct: 293 TH--------------------------AIGQVVPGKVTKIVPFGAFVRVEDG--IEGLV 324

Query: 771 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 805
              +LA   V++       G  I   ++D+    R + LSLK
Sbjct: 325 HISELASHHVDTPDEVVKVGEDIFVKVIDIDLDRRRISLSLK 366


>gi|422452099|ref|ZP_16528800.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2]
 gi|315108213|gb|EFT80189.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2]
          Length = 498

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.1 bits (113), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|256379526|ref|YP_003103186.1| 30S ribosomal protein S1 [Actinosynnema mirum DSM 43827]
 gi|255923829|gb|ACU39340.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827]
          Length = 495

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 188/414 (45%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++ P  + +++IG++  F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 11   AVAPKQVAINDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 70

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL   KE K  RL+L   +        + 
Sbjct: 71   SRELSIKHDVDPNEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYER 117

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 118  AWGTIEALKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE- 174

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 175  --------------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 208

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ 
Sbjct: 209  ----LNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE 263

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 264  VTVEVLDVDMERERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 318

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            ++   + GL H+SEL+E HV+  E + + G+ V VK++ +D ++RRISL +K +
Sbjct: 319  VDE-GIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQA 371



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 155/358 (43%), Gaps = 32/358 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 42  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKED 101

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 102 KEGRLILSKKRAQYERAWGTIEALKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 157

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 158 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 213

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 214 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 267

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D E   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 268 VLDVDMERERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 323

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 708
            G    S+  +       +   VG  V   ++D++ +  RI+LSLKQ+    T D+ F
Sbjct: 324 EGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQANEGFTVDSEF 381



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 145/366 (39%), Gaps = 46/366 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 40  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQK 99

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P
Sbjct: 100 EDKEGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP 155

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 156 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 211

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 212 LQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 270

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ E  R++LSLK +        F + H                           IG ++
Sbjct: 271 VDMERERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 303

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  +E  +    I+     H ++    V+ G  +   ++D+    R 
Sbjct: 304 PGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRR 363

Query: 800 VDLSLK 805
           + LSLK
Sbjct: 364 ISLSLK 369


>gi|404443511|ref|ZP_11008680.1| 30S ribosomal protein S1 [Mycobacterium vaccae ATCC 25954]
 gi|403655333|gb|EJZ10196.1| 30S ribosomal protein S1 [Mycobacterium vaccae ATCC 25954]
          Length = 480

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 187/414 (45%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            SI    + +++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SITSPQVAINDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 804 LK 805
           LK
Sbjct: 362 LK 363



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ   ++ D S   E
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQ---ANEDYSEEFE 374

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            +    K  M  S    G+ +          +W+EGF
Sbjct: 375 AW----KYGMADSYDDQGNYIFPEGFDADTNEWLEGF 407


>gi|373852974|ref|ZP_09595774.1| ribosomal protein S1 [Opitutaceae bacterium TAV5]
 gi|391229292|ref|ZP_10265498.1| ribosomal protein S1 [Opitutaceae bacterium TAV1]
 gi|372475203|gb|EHP35213.1| ribosomal protein S1 [Opitutaceae bacterium TAV5]
 gi|391218953|gb|EIP97373.1| ribosomal protein S1 [Opitutaceae bacterium TAV1]
          Length = 552

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 107/186 (57%), Gaps = 18/186 (9%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V G V+N+T+ G FI L   +D  V +S++S    V  P +    G  V   VL V+   
Sbjct: 358  VHGKVRNMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDASQ 417

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNL----HVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
            +R+ + +K        Q  I+  S++     +GD+V G + ++ S+G F+ +++  + GL
Sbjct: 418  QRISLGMK--------QLAIDPWSDIDSFFKIGDVVKGTVTKITSFGAFVDLKD-GIDGL 468

Query: 1363 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEE 1422
             H+S++SE+ +D ++ + + G++V  +++K+D+++RR+ L +K++ +  +    Q++SE 
Sbjct: 469  VHISQISEERIDKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYSPE----QLASET 524

Query: 1423 ESDEAI 1428
             + EA+
Sbjct: 525  AAYEAL 530



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 44/292 (15%)

Query: 1117 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1176
            +N+ T   EG +  GR+   + G  GL++ IG   +               P S  D   
Sbjct: 88   ENILTKFPEGSVAVGRVKAKVKG--GLIISIGVDAFM--------------PASHID--- 128

Query: 1177 FDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
              P    D+  GQ    KVL+I++  +   ++ LS R  ++   S    +L         
Sbjct: 129  IQPPKNLDQYVGQTYDFKVLKINQERK---NIVLSRRELIEQQRSEKRRNL--------- 176

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +E + P  + +G VKN+T  G FI L   +D  + ++++S G +  P +    G+ 
Sbjct: 177  ----LESIEPGQVRKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRIAHPSEMLKQGEE 231

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            +   ++ V    +RV + LK +      + E        VG  + G++  +  YG FI I
Sbjct: 232  IQVMIIEVNREKERVSLGLKQTTKNPWDEIE----QKFPVGAKIHGKVVNLVPYGAFIEI 287

Query: 1355 ENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            E   + GL H++E+S    ++    + R G+++   +L + K+ ++ISLG++
Sbjct: 288  E-PGVEGLVHITEMSWTKRINKPSEVLRVGQELDAVVLGIQKDDQKISLGLR 338



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 148/359 (41%), Gaps = 40/359 (11%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++PG V KG V  +  FGA +   G +  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 180 IEPGQVRKGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIE 238

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V  + +R+++  K+T       I   +         HG +  +  +G F+    GV+G  
Sbjct: 239 VNREKERVSLGLKQTTKNPWDEIEQKFPVGAK---IHGKVVNLVPYGAFIEIEPGVEGLV 295

Query: 480 PRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK--- 534
             +E+       +PS +  VGQ +   ++      ++I+L    ++P      D+V+   
Sbjct: 296 HITEMSWTKRINKPSEVLRVGQELDAVVLGIQKDDQKISLGLRQLEPNPW---DMVRHNY 352

Query: 535 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 588
            +G+ V G V  +T     + +      +G     H++D      + H +    V+K G 
Sbjct: 353 PIGARVHGKVRNMTTYGAFIEL-----EEGIDGMVHVSDMSWTRKVNHPS---EVLKKGD 404

Query: 589 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGC 643
           E D + VLD ++S   +S         +QL  D      S      VV G V  I   G 
Sbjct: 405 EVDAI-VLDVDASQQRISL------GMKQLAIDPWSDIDSFFKIGDVVKGTVTKITSFGA 457

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           FV     + G    S+  + +   +      GQ V + ++ ++ +  R+ LS+K +  S
Sbjct: 458 FVDLKDGIDGLVHISQISEERIDKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYS 516



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 71/127 (55%), Gaps = 3/127 (2%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            +G+    +VL +    K + ++ +    +  S+   N L ++  G +  G +K +  +G 
Sbjct: 139  VGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLLESIEPGQVRKGVVKNITDFGA 198

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
            FI ++  +  GL H++++S   + +   + + GE+++V I++V++EK R+SLG+K +  K
Sbjct: 199  FIDLDGMD--GLLHITDMSWGRIAHPSEMLKQGEEIQVMIIEVNREKERVSLGLKQTT-K 255

Query: 1411 NDADNLQ 1417
            N  D ++
Sbjct: 256  NPWDEIE 262



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 96/491 (19%), Positives = 189/491 (38%), Gaps = 76/491 (15%)

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
           +L  S+F+ L       K G +V G +  +     +V   G  + + P     +   ++ 
Sbjct: 4   LLAESSFDNL-------KEGSIVPGVITEIRQNEVVVDIGGKSEGVIPANEFIDIGELQI 56

Query: 406 GKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 465
           G   +V  E +    G+         +K   K+   IL+ + E +   +  G +    K 
Sbjct: 57  GSTIEVYVEKLESKNGLPVLSFDKAEQK---KNWENILTKFPEGS---VAVGRVKAKVKG 110

Query: 466 GCFVRFYNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRIMS------SIPASRRINL 518
           G  +    GV  F P S + + P   P ++  +VGQ    +++       +I  SRR  +
Sbjct: 111 GLIISI--GVDAFMPASHIDIQP---PKNLDQYVGQTYDFKVLKINQERKNIVLSRRELI 165

Query: 519 SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 578
                  R +  + ++ G +  GVV  +T      ++   G       T+     + H +
Sbjct: 166 EQQRSEKRRNLLESIEPGQVRKGVVKNITDFGA--FIDLDGMDGLLHITDMSWGRIAHPS 223

Query: 579 VMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINS----AQQLPSDASHIHPNSVVHG 633
            M   +K G E   +++ ++ E   + L  K +  N      Q+ P  A        +HG
Sbjct: 224 EM---LKQGEEIQVMIIEVNREKERVSLGLKQTTKNPWDEIEQKFPVGAK-------IHG 273

Query: 634 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRI 692
            V N++  G F+     + G    ++    +R +  S+   VGQ + + +L +  +  +I
Sbjct: 274 KVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRINKPSEVLRVGQELDAVVLGIQKDDQKI 333

Query: 693 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 752
           +L L+Q   +  D                    +HN         + IG+ + GKV    
Sbjct: 334 SLGLRQLEPNPWDMV------------------RHN---------YPIGARVHGKVRNMT 366

Query: 753 DFGVVVSFEEHSDVYGFITHHQLA------GATVESGSVIQAAILDVAKAERLVDLSLKT 806
            +G  +  EE  D    ++              ++ G  + A +LDV  +++ + L +K 
Sbjct: 367 TYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDASQQRISLGMKQ 426

Query: 807 VFIDRFREANS 817
           + ID + + +S
Sbjct: 427 LAIDPWSDIDS 437


>gi|163841039|ref|YP_001625444.1| 30S ribosomal protein S1 [Renibacterium salmoninarum ATCC 33209]
 gi|162954515|gb|ABY24030.1| SSU ribosomal protein S1P [Renibacterium salmoninarum ATCC 33209]
          Length = 504

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 192/420 (45%), Gaps = 64/420 (15%)

Query: 1010 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1059
            ++ +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 28   VVAINDIGSAEDFLAAIDATIKYFNDGDLVEGIVVKVDRDEVLLDIGYKTEGVIPSRELS 87

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
            +    +PSE+        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 88   IKHDVDPSEV------VSVGDEVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 134

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 135  EKVQEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 184

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 185  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 224

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 225  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGREVTVEV 280

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 281  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGRVTKLVPFGAFVRVED-G 334

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DA++ + 
Sbjct: 335  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGLDAESTEF 394



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 227 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGREVTVEVLEVDL 285

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 286 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGRVTKLVPFGAFVRVEDGIEGLVHIS 342

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           EL +        +  VG  +  +++      RRI+LS 
Sbjct: 343 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSL 380



 Score = 45.1 bits (105), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 54  GDLVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGDEVEALVLTKED 113

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 114 KEGRLILSKKRAQYERAWGDIEKVQE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 169

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 170 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 225

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 226 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGREVTVE 279

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 280 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGRVTKLVPFGAFVRVEDGI 335

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 336 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 383


>gi|25028013|ref|NP_738067.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|259506404|ref|ZP_05749306.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|23493296|dbj|BAC18267.1| putative 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|259166011|gb|EEW50565.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
          Length = 485

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+        +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEV------VQVGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL++ HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVTVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVQVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVTVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|425737299|ref|ZP_18855572.1| 30S ribosomal protein S1 [Staphylococcus massiliensis S46]
 gi|425482647|gb|EKU49803.1| 30S ribosomal protein S1 [Staphylococcus massiliensis S46]
          Length = 393

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 16/204 (7%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +++G V  +T+ G FI L   +D  V +S LS  +V++P++   IG+ V  +V SVE  S
Sbjct: 196  VLEGKVARLTNFGAFIDLG-GVDGLVHVSELSHEHVKTPDEVVEIGQTVNVKVRSVEKDS 254

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ +++K  D+  +    I      + GD+V G++ R+ ++G F+ I    L GL H+S
Sbjct: 255  ERISLSIK--DTLPSPFETIK--EKFNEGDVVEGKVMRLANFGAFVEI-GAGLQGLVHIS 309

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1426
            E+S  H+     +   G+ V VKIL +D+E+ RISL +K++  K +++        ESDE
Sbjct: 310  EISHKHIGTPNEVLEPGDTVNVKILGIDQEEERISLSIKATEEKEESN--------ESDE 361

Query: 1427 AIEEVGSYNRSSLLENSSVAVQDM 1450
              E   SY  S      +  + DM
Sbjct: 362  --ETTQSYTTSQDSNEDNPTIGDM 383



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 68/116 (58%), Gaps = 2/116 (1%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
            GK++  +V  ++P + RV ++ K  ++    + +   L ++  GD++ G++ R+ ++G F
Sbjct: 151  GKVLELKVEELDPENNRVILSRKAVEAIENEKKKEQLLDSIQAGDVLEGKVARLTNFGAF 210

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            I +   +  GL HVSELS +HV   + +   G+ V VK+  V+K+  RISL +K +
Sbjct: 211  IDLGGVD--GLVHVSELSHEHVKTPDEVVEIGQTVNVKVRSVEKDSERISLSIKDT 264



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 113/251 (45%), Gaps = 24/251 (9%)

Query: 279 QSKVVRVDRGLGLLLD------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 332
           ++KV  V +G GL++D      IP++ +ST     I D ++ + + LE K +E      R
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFIPASLISTDY---IEDFSDYDGKVLELKVEELDPENNR 167

Query: 333 -ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
            IL  + +E +     K    +        ++ G V++GKV  + +FGA +   GGV  L
Sbjct: 168 VILSRKAVEAIENEKKKEQLLDS-------IQAGDVLEGKVARLTNFGAFIDL-GGVDGL 219

Query: 392 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 449
             +  +S   +  P +  ++G  +  +V  V+  S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVKTPDEVVEIGQTVNVKVRSVEKDSERISLSIKDTLPSPFETIKEKFNEG 279

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
               +  G + ++   G FV    G+QG    SE+       P+ +   G  V  +I+  
Sbjct: 280 D---VVEGKVMRLANFGAFVEIGAGLQGLVHISEISHKHIGTPNEVLEPGDTVNVKILGI 336

Query: 510 IPASRRINLSF 520
                RI+LS 
Sbjct: 337 DQEEERISLSI 347



 Score = 41.2 bits (95), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 82/169 (48%), Gaps = 14/169 (8%)

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 330
           ++ GD+  + KV R+    G  +D+          V +S+++ E V+  ++  + G  V 
Sbjct: 191 IQAGDVL-EGKVARL-TNFGAFIDLGGVD----GLVHVSELSHEHVKTPDEVVEIGQTVN 244

Query: 331 VRILGF-RHLEGLATGILKA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 387
           V++    +  E ++  I     S FE +         G VV+GKV+ + +FGA V+   G
Sbjct: 245 VKVRSVEKDSERISLSIKDTLPSPFETI---KEKFNEGDVVEGKVMRLANFGAFVEIGAG 301

Query: 388 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 434
           ++ L  +  +S   I  P +  + G  +  ++LG+  + +RI+++ K T
Sbjct: 302 LQGLVHISEISHKHIGTPNEVLEPGDTVNVKILGIDQEEERISLSIKAT 350


>gi|303232665|ref|ZP_07319350.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4]
 gi|302481151|gb|EFL44226.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4]
          Length = 391

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 179/391 (45%), Gaps = 64/391 (16%)

Query: 1025 CDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGK 1080
             D   G  VTG V K++++  LL I       + A+   +     P +L        +G 
Sbjct: 29   TDFDEGDLVTGTVVKIEHDEVLLDIGFKSEGVIPARELTIRKDVNPEDL------VSLGD 82

Query: 1081 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILS 1138
             +   VL   KE K  RL+L       S K  +       ++     G  V G + +++ 
Sbjct: 83   TIEALVL--QKEDKEGRLIL-------SKKRAEYERAWKAVEEKFKAGVNVEGEVIEVVK 133

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            G  GL++ IG  L G +            P S  D  +   LS +  G+ ++ +V+E+ R
Sbjct: 134  G--GLILDIG--LRGFL------------PASLVDLRRVKDLSAF-MGERIESRVIEMDR 176

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                  +V LS R  L+       S++             ++ L P M ++G V ++   
Sbjct: 177  N---RNNVVLSRRVVLEAARKAERSEI-------------LDKLKPGMKLKGTVSSIVDF 220

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TS 1316
            G F+ L   +D  + +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK  T 
Sbjct: 221  GAFVDLG-GIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLDVDLNRERISLGLKQTTE 279

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
            D   A       +    +G I+ G++ ++ ++G F+ +    + GL H+SE+S+ HVD  
Sbjct: 280  DPWRAL------IKKYPIGAIIEGKVTKLVTFGAFVDL-GDGVEGLVHISEMSKQHVDAP 332

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + + G+ V+VK+++VD E+RRISL MK++
Sbjct: 333  AQVCKVGDTVQVKVMEVDLERRRISLSMKAA 363



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +KPGM +KG V ++  FGA V   GG+  L  +  +S   + +P +  KVG E+  +VL 
Sbjct: 204 LKPGMKLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLD 262

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +RI++  K+T      A++  Y       I  G +TK+   G FV   +GV+G  
Sbjct: 263 VDLNRERISLGLKQTTEDPWRALIKKYPIGA---IIEGKVTKLVTFGAFVDLGDGVEGLV 319

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 531
             SE+       P+ +  VG  V+ ++M      RRI+LS       + +DD
Sbjct: 320 HISEMSKQHVDAPAQVCKVGDTVQVKVMEVDLERRRISLSMKAAAETLGQDD 371



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 147/368 (39%), Gaps = 56/368 (15%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G + KIE     +      +G  P  EL +     P  +  +G  ++  ++      
Sbjct: 36  LVTGTVVKIEHDEVLLDIGFKSEGVIPARELTIRKDVNPEDLVSLGDTIEALVLQKEDKE 95

Query: 514 RRINLSFMM----KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 569
            R+ LS       +  +  E+   K G  V G V  V    +++ +  +G+    +P   
Sbjct: 96  GRLILSKKRAEYERAWKAVEEKF-KAGVNVEGEVIEVVKGGLILDIGLRGF----LPA-S 149

Query: 570 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 628
           L D L     + + +    E  +++ +D   +N++LS +  L  + +   S+    + P 
Sbjct: 150 LVD-LRRVKDLSAFMGERIE-SRVIEMDRNRNNVVLSRRVVLEAARKAERSEILDKLKPG 207

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
             + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+  
Sbjct: 208 MKLKGTVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLDVDLN 266

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVIE 745
             RI+L LKQ+                              +E  W   ++ + IG++IE
Sbjct: 267 RERISLGLKQT------------------------------TEDPWRALIKKYPIGAIIE 296

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAER 798
           GKV +   FG  V   +   V G +   +++   V++       G  +Q  +++V    R
Sbjct: 297 GKVTKLVTFGAFVDLGDG--VEGLVHISEMSKQHVDAPAQVCKVGDTVQVKVMEVDLERR 354

Query: 799 LVDLSLKT 806
            + LS+K 
Sbjct: 355 RISLSMKA 362


>gi|422437824|ref|ZP_16514668.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1]
 gi|422524653|ref|ZP_16600662.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2]
 gi|422532624|ref|ZP_16608570.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1]
 gi|313791764|gb|EFS39875.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1]
 gi|315077524|gb|EFT49582.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2]
 gi|327452888|gb|EGE99542.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1]
          Length = 498

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 172/383 (44%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V+G V KVD +  LL I       + ++   +    +P E+       ++G  +   
Sbjct: 53   GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEV------VNVGDEI--E 104

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
             L   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL+V
Sbjct: 105  ALVQQKEDKEGRLILSKKR-----AQYERAWGTIEQIKEEDGVVTGTVIEVVKG--GLIV 157

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 158  DIGLRGFLPASLVEMRRVRDLQPYVG---------------QEIEAKIIELDKNRN---N 199

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S    +              +  L    I +G V ++ + G F+ L 
Sbjct: 200  VVLSRRAWLEQTQSEVRQNF-------------LHQLQKGQIRKGVVSSIVNFGAFVDLG 246

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +  
Sbjct: 247  -GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKAT-----QEDP 300

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E HV+  E +    +
Sbjct: 301  WQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAERHVEIPEQVVSVND 359

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
             V VKI+ +D ++RRISL +K +
Sbjct: 360  DVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.5 bits (114), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|403515139|ref|YP_006655959.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
 gi|403080577|gb|AFR22155.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
          Length = 403

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDR 258

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K ++     Q+     ++LH GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLHEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 14/173 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDN 256

Query: 425 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 478
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLHEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 531
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S  D
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSSD 362



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGA 213

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            FI +   +  GL H+SE+S  HVD    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 34/197 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +                  P    +   DL   
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATADLHEG 283

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1306 SKRVEVTLKTSDSRTAS 1322
             +R+ +++K +DS  +S
Sbjct: 344  DRRISLSIKAADSNASS 360



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 134/320 (41%), Gaps = 36/320 (11%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 515 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LHE 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 688 ETGRITLSLK--QSCCSSTD 705
              RI+LS+K   S  SS+D
Sbjct: 343 SDRRISLSIKAADSNASSSD 362


>gi|145224145|ref|YP_001134823.1| 30S ribosomal protein S1 [Mycobacterium gilvum PYR-GCK]
 gi|315444481|ref|YP_004077360.1| 30S ribosomal protein S1 [Mycobacterium gilvum Spyr1]
 gi|145216631|gb|ABP46035.1| SSU ribosomal protein S1P [Mycobacterium gilvum PYR-GCK]
 gi|315262784|gb|ADT99525.1| SSU ribosomal protein S1P [Mycobacterium gilvum Spyr1]
          Length = 481

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 187/414 (45%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 804 LK 805
           LK
Sbjct: 362 LK 363



 Score = 47.4 bits (111), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ   ++ D S   E
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQ---ANEDYSEEFE 374

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            +    K  M  S    G+ +          +W+EGF
Sbjct: 375 AW----KYGMADSYDDQGNYIFPEGFDADTNEWLEGF 407


>gi|302787034|ref|XP_002975287.1| hypothetical protein SELMODRAFT_415455 [Selaginella moellendorffii]
 gi|300156861|gb|EFJ23488.1| hypothetical protein SELMODRAFT_415455 [Selaginella moellendorffii]
          Length = 312

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 19/218 (8%)

Query: 972  NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1030
            N    + +GQTV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 51   NPLRKYSVGQTVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFE-TVTIE 109

Query: 1031 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT---GHVL 1087
            Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F +     K+VT    H+ 
Sbjct: 110  QSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFLK--STSKSVTCSSCHIR 167

Query: 1088 SINKEKKLLRLVLRP-----FQDG--ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1140
            S+N E+K + L L P     F +G  +  + +D+           G  + G +  ++   
Sbjct: 168  SVNHERKQVDLSLHPKATSLFTEGQFVRCRVLDLKRPGRGEM---GLELSGFVKNVME-- 222

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
             G  V + P L  R+    L N  V +P   +  G+ D
Sbjct: 223  KGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGKVD 260



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 48/134 (35%)

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
            + EGQFV+C+VL++ R  RG   +ELS                                 
Sbjct: 188  FTEGQFVRCRVLDLKRPGRGEMGLELS--------------------------------- 214

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                   G+VKNV  KGCF++LS  L+A++ L NLS+ +V++P + FP GK        V
Sbjct: 215  -------GFVKNVMEKGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGK--------V 259

Query: 1303 EPLSKRVEVTLKTS 1316
            +  +KR+ + +K S
Sbjct: 260  DAETKRISLGMKAS 273



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 121/286 (42%), Gaps = 48/286 (16%)

Query: 1172 YDEGQFDPLSGYDEGQFVKCKVL---EISRTVRGTFHVELSLR-SSLDGMSSTNSSDLST 1227
            Y EG  +PL  Y  GQ V+ K+L   + SR  R    ++LSLR S L G      +D + 
Sbjct: 47   YREG--NPLRKYSVGQTVRAKILSKRKTSRKHRNAATLDLSLRPSELAG------NDAAC 98

Query: 1228 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG------Y 1281
             V T        E ++    V  YV+ V     +++LS  L   + + + SD       +
Sbjct: 99   SVIT-------FETVTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERF 151

Query: 1282 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL--------H 1333
            ++S  K        +  + SV    K+V+++L    +   ++ +      L         
Sbjct: 152  LKSTSKSVTCS---SCHIRSVNHERKQVDLSLHPKATSLFTEGQFVRCRVLDLKRPGRGE 208

Query: 1334 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1393
            +G  + G +K V   G F+ + + +L     +  LS   V N   ++  G        KV
Sbjct: 209  MGLELSGFVKNVMEKGCFVVL-SPSLEARIQLKNLSNSFVQNPAEMFPPG--------KV 259

Query: 1394 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSL 1439
            D E +RISLGMK+SY   +     + + EE     ++   Y R+SL
Sbjct: 260  DAETKRISLGMKASYLTPEDG---IDTMEEEGRLQQKRSYYRRTSL 302


>gi|383831036|ref|ZP_09986125.1| ribosomal protein S1 [Saccharomonospora xinjiangensis XJ-54]
 gi|383463689|gb|EID55779.1| ribosomal protein S1 [Saccharomonospora xinjiangensis XJ-54]
          Length = 493

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 175/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G AV   
Sbjct: 41   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDAVEAL 94

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 95   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVRGTVIEVVKG--GLIL 145

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 146  DIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNRN---N 187

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L+   + +G V ++ + G F+ L 
Sbjct: 188  VVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG 234

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q  
Sbjct: 235  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-- 291

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G 
Sbjct: 292  ---FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGG 347

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +V VK++ +D E+RRISL +K +
Sbjct: 348  EVMVKVIDIDLERRRISLSLKQA 370



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 145/362 (40%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 43  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKEDKE 102

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGF----LP---- 154

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 155 ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKG 214

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 215 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 273

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 274 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 306

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  EE  +    I+     H ++    V+ G  +   ++D+    R + LS
Sbjct: 307 TKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLS 366

Query: 804 LK 805
           LK
Sbjct: 367 LK 368



 Score = 47.8 bits (112), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 150/358 (41%), Gaps = 32/358 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKED 100

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 708
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T D  F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGFTPDTEF 380


>gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
 gi|256843084|ref|ZP_05548572.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
 gi|256850264|ref|ZP_05555693.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
 gi|262046344|ref|ZP_06019306.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
 gi|293379767|ref|ZP_06625899.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
 gi|295692880|ref|YP_003601490.1| 30S ribosomal protein s1 [Lactobacillus crispatus ST1]
 gi|423318778|ref|ZP_17296655.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
 gi|423321585|ref|ZP_17299456.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
 gi|227861336|gb|EEJ68966.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
 gi|256614504|gb|EEU19705.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
 gi|256712901|gb|EEU27893.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
 gi|260573215|gb|EEX29773.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
 gi|290923676|gb|EFE00547.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
 gi|295030986|emb|CBL50465.1| 30S Ribosomal protein S1 [Lactobacillus crispatus ST1]
 gi|405591865|gb|EKB65324.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
 gi|405594274|gb|EKB67691.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
          Length = 402

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +V+G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDR 258

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K ++     Q+     ++L+ GDI  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDIFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISLSIKAA 354



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 14/170 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G VV+GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V+G+ +
Sbjct: 198 GDVVEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDN 256

Query: 425 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 478
            R  I+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDIFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 528
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISLSIKAADSNAS 359



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD+V G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGA 213

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            FI +   +  GL H+SE+S  HVD    + + G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 34/199 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD+V G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVVEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKP--------SDVLK---V 243

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             I +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPS 343

Query: 1306 SKRVEVTLKTSDSRTASQS 1324
             +R+ +++K +DS  +S++
Sbjct: 344  DRRISLSIKAADSNASSEN 362



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 133/317 (41%), Gaps = 34/317 (10%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           ++VKPG KFK    LV R  G   +        T +K + A      +  D     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEDGNAVEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLIVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 515 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS   +++  R    D V     +G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             +  G V ++   G FV     + G    S+  +      S    VGQSV+  +L+++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDP 342

Query: 688 ETGRITLSLKQSCCSST 704
              RI+LS+K +  +++
Sbjct: 343 SDRRISLSIKAADSNAS 359


>gi|407983878|ref|ZP_11164515.1| S1 RNA binding domain protein [Mycobacterium hassiacum DSM 44199]
 gi|407374455|gb|EKF23434.1| S1 RNA binding domain protein [Mycobacterium hassiacum DSM 44199]
          Length = 478

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VSVGDKVEALVLT--KEDKDGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE H++  + + + G+ V VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHIEVADQVVQVGDDVMVKVIDIDLERRRISLSLKQA 365



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 146/366 (39%), Gaps = 46/366 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDKVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKDGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++A   V+ G  +   ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHIEVADQVVQVGDDVMVKVIDIDLERRR 357

Query: 800 VDLSLK 805
           + LSLK
Sbjct: 358 ISLSLK 363



 Score = 47.4 bits (111), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 152/354 (42%), Gaps = 31/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG ++   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDKVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    +D
Sbjct: 318 EGLVHISELSERHIEVADQVVQVGDDVMVKVIDIDLERRRISLSLKQANEDYSD 371


>gi|266623563|ref|ZP_06116498.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
            hathewayi DSM 13479]
 gi|288864643|gb|EFC96941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
            hathewayi DSM 13479]
          Length = 367

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 103/190 (54%), Gaps = 17/190 (8%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E  E + P  +V+G +KNVT  G FI L    D  + +S +S G VESP+K F  G+ + 
Sbjct: 186  ELFERIHPGDVVEGTIKNVTDFGAFIDLG-GADGLLHISEMSWGRVESPKKVFKAGEKM- 243

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
             RVL  +    ++ ++LK  ++     + +   +    G++V+G++ R+  +G F+ +E 
Sbjct: 244  -RVLIKDINGDKIALSLKFPETNPWKDAAVKYAA----GNVVVGRVARMTDFGAFVELE- 297

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
              +  L HVS++S DHVD    +   G++++ K++  +++ R+ISL MK+         L
Sbjct: 298  PGVDALLHVSQISRDHVDKPSDVLSIGQEIEAKVVDFNEDDRKISLSMKA---------L 348

Query: 1417 QMSSEEESDE 1426
            QM    + DE
Sbjct: 349  QMQDMAQVDE 358



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 22/255 (8%)

Query: 285 VDRGLGLLLD-----IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 339
           +D GL ++++     IP++ VS      +S  A++E+   E    E +  R RI+G R  
Sbjct: 118 LDGGLSVVVEGARVFIPASLVSDTYEKDLSKYADQEI---EFVITEFNPKRRRIIGDRKQ 174

Query: 340 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 399
             +A    + +  +  +F    + PG VV+G +  V  FGA +   GG   L  +  MS 
Sbjct: 175 LMVA----RRAEMQKELFER--IHPGDVVEGTIKNVTDFGAFIDL-GGADGLLHISEMSW 227

Query: 400 FEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 459
             +  P K FK G ++   +  +   +I ++ K             YA      +  G +
Sbjct: 228 GRVESPKKVFKAGEKMRVLIKDINGDKIALSLKFPETNPWKDAAVKYAAGN---VVVGRV 284

Query: 460 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
            ++   G FV    GV      S++  D   +PS +  +GQ ++ +++      R+I+LS
Sbjct: 285 ARMTDFGAFVELEPGVDALLHVSQISRDHVDKPSDVLSIGQEIEAKVVDFNEDDRKISLS 344

Query: 520 F----MMKPTRVSED 530
                M    +V ED
Sbjct: 345 MKALQMQDMAQVDED 359



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 35/189 (18%)

Query: 624 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
            IHP  VV G + N+ + G F+  LG   G    S+   G+     K +  G+ +R  I 
Sbjct: 190 RIHPGDVVEGTIKNVTDFGAFID-LGGADGLLHISEMSWGRVESPKKVFKAGEKMRVLIK 248

Query: 684 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 743
           D+N +  +I LSLK                         +++    + +K+      G+V
Sbjct: 249 DINGD--KIALSLK-----------------------FPETNPWKDAAVKYA----AGNV 279

Query: 744 IEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAER 798
           + G+V    DFG  V  E   D    ++     H       +  G  I+A ++D  + +R
Sbjct: 280 VVGRVARMTDFGAFVELEPGVDALLHVSQISRDHVDKPSDVLSIGQEIEAKVVDFNEDDR 339

Query: 799 LVDLSLKTV 807
            + LS+K +
Sbjct: 340 KISLSMKAL 348



 Score = 41.6 bits (96), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 616 QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           Q L      I    +V G V ++ E    +    +  G  PR++  D Q  DL+    VG
Sbjct: 8   QMLEESLKTIRTGEIVTGKVIDVKEDEIVLNIGYKSDGIIPRNEYTDDQNLDLTTVVSVG 67

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASF---MQEHFLLEEKIAML 722
             + + ++ VN   G++ LS K+      +       + H +L  K+A +
Sbjct: 68  DEMEAKVIKVNDGEGQVALSYKRLAADRGNKRLEEAFENHEVLTAKVAAV 117


>gi|373486910|ref|ZP_09577581.1| SSU ribosomal protein S1P [Holophaga foetida DSM 6591]
 gi|372010863|gb|EHP11466.1| SSU ribosomal protein S1P [Holophaga foetida DSM 6591]
          Length = 585

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 14/210 (6%)

Query: 1231 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEF 1289
            TP   +E  E  +   IV G V+N+T  G F+ L   +D  + +S+ S    ++ P +  
Sbjct: 378  TPNPWMEVAEKYNIGQIVTGTVRNITEFGAFVELEEGIDGLIHVSDFSWTKKIKHPGEVV 437

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1349
              G  V  +VL+++PL++R+ + +K  +     Q          VGD V G+I R+  +G
Sbjct: 438  KKGDSVTAKVLNLDPLNQRMSLGVKQMEPNVWEQF----FDGHRVGDTVTGKIARLTDFG 493

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
             F+ + +  + GL HVSELS   V++I+  +   +++ +KI+K+D  + RI L +K   +
Sbjct: 494  AFVDLGD-GIEGLVHVSELSRKRVEDIQKEFTTAQELTMKIVKLDPTEHRIGLSVKQ--Y 550

Query: 1410 KNDADNLQMSSEEESDEAIEEVGSYNRSSL 1439
            + D +  +M      DEA  ++  + +++L
Sbjct: 551  ETDLEKGEM------DEARAKMEPFKKATL 574



 Score = 67.4 bits (163), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 7/170 (4%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E +  L    +V+G VKN+T  G FI L   +D  + ++++S G +  P + F +G  V 
Sbjct: 212  ETLAGLEEGKLVEGTVKNITEYGAFIDLG-GVDGLLHITDMSWGRLNHPSEMFQVGDKVE 270

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
              +L  +  ++RV +  K   +      E     N  V     G++  +  YG F+ +E 
Sbjct: 271  VAILKYDKDTERVSLGYKQKFADPWLTVEERFPMNASVK----GKVVSITDYGAFVELE- 325

Query: 1357 TNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              + GL HVSE+S    V + + +   G+ V+  IL+VD E RRISLGMK
Sbjct: 326  PGVEGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQVDVESRRISLGMK 375



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 148/352 (42%), Gaps = 26/352 (7%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           T + ++ G +V+G V  +  +GA +   GGV  L  +  MS   +  P + F+VG ++  
Sbjct: 213 TLAGLEEGKLVEGTVKNITEYGAFIDL-GGVDGLLHITDMSWGRLNHPSEMFQVGDKVEV 271

Query: 418 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
            +L     ++R+++ +K+      L +   +          G +  I  +G FV    GV
Sbjct: 272 AILKYDKDTERVSLGYKQKFADPWLTVEERFPMNAS---VKGKVVSITDYGAFVELEPGV 328

Query: 476 QGFAPRSELGLDPGCEPS-SMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDL 532
           +G    SE+      + +  M ++G +V+  I+     SRRI+L    + P    E  + 
Sbjct: 329 EGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQVDVESRRISLGMKQVTPNPWMEVAEK 388

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 587
             +G +V+G V  +T     V +      +G     H++D      ++H      V+K G
Sbjct: 389 YNIGQIVTGTVRNITEFGAFVEL-----EEGIDGLIHVSDFSWTKKIKHPG---EVVKKG 440

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
                ++L LD  +  + L  K    N  +Q   D   +     V G +  + + G FV 
Sbjct: 441 DSVTAKVLNLDPLNQRMSLGVKQMEPNVWEQF-FDGHRV--GDTVTGKIARLTDFGAFVD 497

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
               + G    S+    +  D+ K +   Q +   I+ ++    RI LS+KQ
Sbjct: 498 LGDGIEGLVHVSELSRKRVEDIQKEFTTAQELTMKIVKLDPTEHRIGLSVKQ 549



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 162/414 (39%), Gaps = 68/414 (16%)

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSL--INSAQQLPSDASHIHPNSVVHGYVCNIIETGC 643
           G  +D +++ ++    N++LS K  +  IN++ +  + A  +    +V G V NI E G 
Sbjct: 177 GKSYDMKVIKVNRRRGNIVLSRKLFMETINASLKEETLAG-LEEGKLVEGTVKNITEYGA 235

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           F+  LG + G    +    G+    S+ + VG  V   IL  + +T R++L  KQ     
Sbjct: 236 FID-LGGVDGLLHITDMSWGRLNHPSEMFQVGDKVEVAILKYDKDTERVSLGYKQK---- 290

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
               F      +EE+  M  S                   ++GKV    D+G  V  E  
Sbjct: 291 ----FADPWLTVEERFPMNAS-------------------VKGKVVSITDYGAFVELEPG 327

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 817
                H     +    + A   V  G +++A IL V    R + L +K V  + +     
Sbjct: 328 VEGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQVDVESRRISLGMKQVTPNPW----- 382

Query: 818 NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ--- 874
                      E ++   + Q V   V  + E    + L E     G   VSD++     
Sbjct: 383 ----------MEVAEKYNIGQIVTGTVRNITEFGAFVELEEGID--GLIHVSDFSWTKKI 430

Query: 875 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 934
           K P +    G SV A V+ L   +   R+ L +K     +   +   +    + VG  V 
Sbjct: 431 KHPGEVVKKGDSVTAKVLNLDPLNQ--RMSLGVK-----QMEPNVWEQFFDGHRVGDTVT 483

Query: 935 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
            +I  +      +  G G  G +H++E++  +   VE++   F   Q +T +I+
Sbjct: 484 GKIARLTDFGAFVDLGDGIEGLVHVSELSRKR---VEDIQKEFTTAQELTMKIV 534



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            L+ L  G +V G +K +  YG FI +   +  GL H++++S   +++   +++ G+KV+V
Sbjct: 214  LAGLEEGKLVEGTVKNITEYGAFIDLGGVD--GLLHITDMSWGRLNHPSEMFQVGDKVEV 271

Query: 1389 KILKVDKEKRRISLGMKSSY 1408
             ILK DK+  R+SLG K  +
Sbjct: 272  AILKYDKDTERVSLGYKQKF 291



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 107/507 (21%), Positives = 188/507 (37%), Gaps = 95/507 (18%)

Query: 55  VGQLVSCIVLQLDD-------DKKEIGKRKIW----LSLRLSLLYKGLSLETVQEGMVLT 103
           VG +V  +V  L+D        ++   K KIW     + R ++   G+ LE V+ G+ + 
Sbjct: 93  VGDVVEVLVEHLEDVNGNVRLSRERAEKMKIWDEVEKAFRSNMTVHGVVLEKVKGGLAVD 152

Query: 104 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDR 155
             +++                 FLP       S +DVKP        G      V  ++R
Sbjct: 153 IGIRA-----------------FLP------GSQVDVKPVRNLDPYLGKSYDMKVIKVNR 189

Query: 156 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 215
            R  + LS       + +   LK  ++  L  G +V   V++I E G  +       G V
Sbjct: 190 RRGNIVLSRK--LFMETINASLKEETLAGLEEGKLVEGTVKNITEYGAFIDL-----GGV 242

Query: 216 D-IFHLQN-TFPTTNWKNDYNQ-HKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAP 267
           D + H+ + ++   N  ++  Q   KV   IL  D  +  V L       +P+L      
Sbjct: 243 DGLLHITDMSWGRLNHPSEMFQVGDKVEVAILKYDKDTERVSLGYKQKFADPWLTVEERF 302

Query: 268 PSHV----KVGDIYDQSKVVRVDRGLGLLLDIPSTPV-----STPAYVTISDVAEEEVRK 318
           P +     KV  I D    V ++ G+  L+ +          S    V + D+ E  + +
Sbjct: 303 PMNASVKGKVVSITDYGAFVELEPGVEGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQ 362

Query: 319 LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 378
           ++ + +  S    ++     +E                        G +V G V  +  F
Sbjct: 363 VDVESRRISLGMKQVTPNPWME-----------------VAEKYNIGQIVTGTVRNITEF 405

Query: 379 GAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVLGVK--SKRITVTHK 432
           GA V+   G+  L    H+S+F   K    PG+  K G  +  +VL +   ++R+++  K
Sbjct: 406 GAFVELEEGIDGLI---HVSDFSWTKKIKHPGEVVKKGDSVTAKVLNLDPLNQRMSLGVK 462

Query: 433 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 492
           +            +          G I ++   G FV   +G++G    SEL      + 
Sbjct: 463 QMEPNVWEQFFDGHRVGD---TVTGKIARLTDFGAFVDLGDGIEGLVHVSELSRKRVEDI 519

Query: 493 SSMYHVGQVVKCRIMSSIPASRRINLS 519
              +   Q +  +I+   P   RI LS
Sbjct: 520 QKEFTTAQELTMKIVKLDPTEHRIGLS 546


>gi|347753863|ref|YP_004861427.1| 30S ribosomal protein S1 [Candidatus Chloracidobacterium thermophilum
            B]
 gi|347586381|gb|AEP10911.1| SSU ribosomal protein S1P [Candidatus Chloracidobacterium
            thermophilum B]
          Length = 562

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 103/190 (54%), Gaps = 6/190 (3%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V G V+N+T  G F+ +   +D  + +S+LS    V+ P      G+ V   + +++  +
Sbjct: 372  VSGKVRNLTDFGAFVEIEDGIDGLIHVSDLSWTKRVKHPSDVLKKGQSVEAIITNIDTAN 431

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ +++K  +     +       +  VGD+V G++ R+  +G+F+ +E   + GLCH+S
Sbjct: 432  RRLSLSIKDLEPNAWERF----FQSHRVGDVVTGKVVRLAGFGVFVELEE-GIEGLCHIS 486

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1426
            ELS+  VD  E++   G+ +  KILK+D+  R+I L  ++   +ND +++      ES  
Sbjct: 487  ELSDQRVDRPESVVSVGQVLPFKILKLDESNRKIGLSARAVGKENDPEDVSNYLNNESMT 546

Query: 1427 AIEEVGSYNR 1436
            ++ EV  + R
Sbjct: 547  SLGEVARFLR 556



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 13/176 (7%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            +  E +  L  N+IV G VKN+T  G FI L   +D  + ++++S G +  P   F IG 
Sbjct: 186  RKAETLRMLDENVIVSGQVKNLTDYGAFIDLG-GIDGLLHVTDMSWGRLPKPSDMFNIGD 244

Query: 1294 LVAGRVLSVEPLSKRVEVTLKT---SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
             +  +VL  +   +RV +  K        T ++    N       DIV G++  V  YG 
Sbjct: 245  TIQVKVLKFDRERERVSLGYKQLLPDPWDTVTERYRKN-------DIVKGRVVSVTDYGA 297

Query: 1351 FITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            F+ +E   + GL HVSE++    + +   +   G++V+  IL+VD   RRISLGMK
Sbjct: 298  FVELEE-GVEGLVHVSEMTWSKRIKHPSKLVSVGDEVEAMILEVDPANRRISLGMK 352



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 151/346 (43%), Gaps = 32/346 (9%)

Query: 366 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 423
           ++V G+V  +  +GA +   GG+  L  +  MS   + KP   F +G  +  +VL    +
Sbjct: 198 VIVSGQVKNLTDYGAFIDL-GGIDGLLHVTDMSWGRLPKPSDMFNIGDTIQVKVLKFDRE 256

Query: 424 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 483
            +R+++ +K+ L      +   Y +     I  G +  +  +G FV    GV+G    SE
Sbjct: 257 RERVSLGYKQLLPDPWDTVTERYRKND---IVKGRVVSVTDYGAFVELEEGVEGLVHVSE 313

Query: 484 LGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV----KLGSL 538
           +      + PS +  VG  V+  I+   PA+RRI+L   MK  + +  D V     +GS 
Sbjct: 314 MTWSKRIKHPSKLVSVGDEVEAMILEVDPANRRISLG--MKQIQPNPWDSVAQRYSVGSR 371

Query: 539 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFDQL 593
           VSG V  +T     V +       G     H++D      ++H +    V+K G   + +
Sbjct: 372 VSGKVRNLTDFGAFVEI-----EDGIDGLIHVSDLSWTKRVKHPS---DVLKKGQSVEAI 423

Query: 594 LV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +  +D  +  L LS K    N+ ++     SH     VV G V  +   G FV     + 
Sbjct: 424 ITNIDTANRRLSLSIKDLEPNAWERFFQ--SH-RVGDVVTGKVVRLAGFGVFVELEEGIE 480

Query: 653 GFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLK 697
           G    S+  D QR D  ++   VGQ +   IL ++    +I LS +
Sbjct: 481 GLCHISELSD-QRVDRPESVVSVGQVLPFKILKLDESNRKIGLSAR 525



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 168/393 (42%), Gaps = 61/393 (15%)

Query: 55  VGQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
           +G+ ++  +L+L+  +  I   RK+ L   ++   K  +L  + E ++++  VK++ D+G
Sbjct: 153 IGREMTFRILKLNKKRNNIVLSRKVLLEEEMTA-RKAETLRMLDENVIVSGQVKNLTDYG 211

Query: 114 YILHFGLPSFTGFLPRNNLAENSGIDVKP------GLLLQGVVRSIDRTRKVVYLS---- 163
             +  G     G L   +++   G   KP      G  +Q  V   DR R+ V L     
Sbjct: 212 AFIDLG--GIDGLLHVTDMS--WGRLPKPSDMFNIGDTIQVKVLKFDRERERVSLGYKQL 267

Query: 164 -SDP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
             DP DTV++   K+             +V  RV S+ + G  +       G V +  + 
Sbjct: 268 LPDPWDTVTERYRKN------------DIVKGRVVSVTDYGAFVELEEGVEGLVHVSEMT 315

Query: 222 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY--LLHNRAPPSHV--K 272
            +    +     +   +V A IL VDP +R + L +     NP+  +    +  S V  K
Sbjct: 316 WSKRIKHPSKLVSVGDEVEAMILEVDPANRRISLGMKQIQPNPWDSVAQRYSVGSRVSGK 375

Query: 273 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRV 331
           V ++ D    V ++ G+  L             + +SD++  + V+      K+G  V  
Sbjct: 376 VRNLTDFGAFVEIEDGIDGL-------------IHVSDLSWTKRVKHPSDVLKKGQSVEA 422

Query: 332 RILGF----RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 387
            I       R L  L+   L+ +A+E    +H   + G VV GKV+ +  FG  V+   G
Sbjct: 423 IITNIDTANRRLS-LSIKDLEPNAWERFFQSH---RVGDVVTGKVVRLAGFGVFVELEEG 478

Query: 388 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           ++ LC +  +S+  + +P     VG  L F++L
Sbjct: 479 IEGLCHISELSDQRVDRPESVVSVGQVLPFKIL 511



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 6/117 (5%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1348
            IG+ +  R+L +      + ++ K    +  TA ++E   + + +V  IV GQ+K +  Y
Sbjct: 153  IGREMTFRILKLNKKRNNIVLSRKVLLEEEMTARKAETLRMLDENV--IVSGQVKNLTDY 210

Query: 1349 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            G FI +   +  GL HV+++S   +     ++  G+ ++VK+LK D+E+ R+SLG K
Sbjct: 211  GAFIDLGGID--GLLHVTDMSWGRLPKPSDMFNIGDTIQVKVLKFDRERERVSLGYK 265



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVG--AELVFRVLG 421
           G  V GKV  +  FGA V+   G+  L  +  +S  + VK P    K G   E +   + 
Sbjct: 369 GSRVSGKVRNLTDFGAFVEIEDGIDGLIHVSDLSWTKRVKHPSDVLKKGQSVEAIITNID 428

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
             ++R++++ K     +      S+       +  G + ++   G FV    G++G    
Sbjct: 429 TANRRLSLSIKDLEPNAWERFFQSHRVGD---VVTGKVVRLAGFGVFVELEEGIEGLCHI 485

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           SEL       P S+  VGQV+  +I+    ++R+I LS
Sbjct: 486 SELSDQRVDRPESVVSVGQVLPFKILKLDESNRKIGLS 523


>gi|296129804|ref|YP_003637054.1| RNA binding S1 domain-containing protein [Cellulomonas flavigena DSM
            20109]
 gi|296021619|gb|ADG74855.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109]
          Length = 492

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 193/425 (45%), Gaps = 68/425 (16%)

Query: 1007 KPS--MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            KP+   + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 8    KPASPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 67

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P E+        +G AV   VL   KE K  RL+L   +        + 
Sbjct: 68   SRELSIKHDVDPGEV------VKVGDAVEALVL--QKEDKEGRLILSKKR-----AQYER 114

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 115  AWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 171

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+    T S   ST + T   
Sbjct: 172  --------------IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT--- 208

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                   L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ 
Sbjct: 209  -------LQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE 260

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ 
Sbjct: 261  VTVEVLEVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVR 315

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY--FKN 1411
            +E+  + GL H+SEL+  HV+  E + + G+ V VK++ +D E+RRISL +K +   F  
Sbjct: 316  VED-GIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQANEGFDP 374

Query: 1412 DADNL 1416
            ++D+ 
Sbjct: 375  ESDDF 379



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLE 267

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +     P  +  VG  V  +++      RRI+LS 
Sbjct: 325 HISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSL 365



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 152/349 (43%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V PG+  KVG  +   VL  + 
Sbjct: 39  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDAVEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 265 VLEVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 319

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 IEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQA 368


>gi|227893491|ref|ZP_04011296.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
 gi|227864716|gb|EEJ72137.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
          Length = 402

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 95/169 (56%), Gaps = 6/169 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDR 258

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K ++     Q+     +NL  GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TANLSEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1415
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++     +DN
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSDN 362



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDN 256

Query: 425 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 478
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATANLSEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 531
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S D+
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSDN 362



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGA 213

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            FI +   +  GL H+SE+S  HVD    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 94/199 (47%), Gaps = 34/199 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +                  P    +   +LS  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATANLSEG 283

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1306 SKRVEVTLKTSDSRTASQS 1324
             +R+ +++K +DS  +S +
Sbjct: 344  DRRISLSIKAADSNASSDN 362



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 132/317 (41%), Gaps = 34/317 (10%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGKAIEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 515 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  ++ S    
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATANLSE--- 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 688 ETGRITLSLKQSCCSST 704
              RI+LS+K +  +++
Sbjct: 343 SDRRISLSIKAADSNAS 359



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 144/371 (38%), Gaps = 59/371 (15%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 529
           GV+G   R E   D   +   +   G   K  ++      +  N  F    TR+ E    
Sbjct: 44  GVEGVITRREYTSDRNADLRDLVKPGDKFKALVLRRAGGDKE-NGEFFFSVTRLKEREAY 102

Query: 530 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
           D L K    G  + G V       ++V V  +G+    +P   +++   + + +K  I  
Sbjct: 103 DKLQKDFEEGKAIEGTVTSSVRGGLLVDVGTRGF----LPASLISNR--YVSDLKPYIGK 156

Query: 587 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 644
             +  ++  +D   + L+LS K  L+   ++   D  AS +    V+ G V  +   G F
Sbjct: 157 TMKL-KITEIDPNKNRLILSHK-DLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAF 214

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
           +  +G + G    S+         S     GQ V+  ++ ++++  RI+LS+KQ+  S  
Sbjct: 215 ID-VGGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSP- 272

Query: 705 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 764
                      E+  A L                  G V EG+V    +FG  V  E   
Sbjct: 273 ----------FEQATANLSE----------------GDVFEGEVKSLTNFGAFV--EVAD 304

Query: 765 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 817
            + G +   +++   V+        G  ++  +L++  ++R + LS+K         A+S
Sbjct: 305 GIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA----DSNASS 360

Query: 818 NRQAQKKKRKR 828
           +    + +R R
Sbjct: 361 DNHNSRPRRSR 371


>gi|227495256|ref|ZP_03925572.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436]
 gi|226831708|gb|EEH64091.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436]
          Length = 481

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 182/411 (44%), Gaps = 62/411 (15%)

Query: 1007 KPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1060
            +P  + V++IGS+  L    D +I     G  V G V KVD++  LL I    K +  IL
Sbjct: 6    QPEQIAVNDIGSREDLIAAIDATIKYFKEGDIVEGTVVKVDHDEVLLDIG--YKTEGVIL 63

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSI-NKEKKLLRLVLRPFQDGISDKTVDISN--D 1117
                        +    IG  V   VL + +KE +LL          +S K         
Sbjct: 64   SRELSIKHDIAPEDIVKIGDKVEALVLQMEDKEGRLL----------LSKKRAQYERAWG 113

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 114  TIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 167

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS RS L+   S   ++             
Sbjct: 168  -----------LEAKIIELDKNRN---NVVLSRRSYLEQTQSEVRTNF------------ 201

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 202  -LHTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPAEVVEVGDEVTV 259

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 260  EVLEVDMSRERVSLSLKAT-----MEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 314

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL++ H++  E + + G+   VKI+ +D E+RRISL +K +
Sbjct: 315  -GIEGLVHISELAQRHIEAPEQVVKVGDGAFVKIIDIDLERRRISLSLKQA 364



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 148/350 (42%), Gaps = 31/350 (8%)

Query: 363 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
           K G +V+G V+ VD    ++      + +     +S    + P    K+G ++   VL +
Sbjct: 33  KEGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDIAPEDIVKIGDKVEALVLQM 92

Query: 423 KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
           + K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P
Sbjct: 93  EDKEGRLLLSKKRAQYERAWGTIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLP 148

Query: 481 RS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 532
            S  E+       P    ++G+ ++ +I+      +++  SRR  L       R +    
Sbjct: 149 ASLVEMRRVRDLAP----YIGRELEAKIIELDKNRNNVVLSRRSYLEQTQSEVRTNFLHT 204

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD 591
           ++ G + SGVV  +      V +   G   G +    L+  H++H      V++ G E  
Sbjct: 205 LQKGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPA---EVVEVGDEVT 258

Query: 592 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 649
            ++L +D     + LS K ++ +  Q      +  H    VV G V  ++  G FVR   
Sbjct: 259 VEVLEVDMSRERVSLSLKATMEDPWQAF----ARTHAIGQVVPGKVTKLVPFGAFVRVED 314

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            + G    S+          +   VG      I+D++ E  RI+LSLKQ+
Sbjct: 315 GIEGLVHISELAQRHIEAPEQVVKVGDGAFVKIIDIDLERRRISLSLKQA 364


>gi|381162416|ref|ZP_09871646.1| ribosomal protein S1 [Saccharomonospora azurea NA-128]
 gi|418461759|ref|ZP_13032823.1| 30S ribosomal protein S1 [Saccharomonospora azurea SZMC 14600]
 gi|359738168|gb|EHK87068.1| 30S ribosomal protein S1 [Saccharomonospora azurea SZMC 14600]
 gi|379254321|gb|EHY88247.1| ribosomal protein S1 [Saccharomonospora azurea NA-128]
          Length = 493

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 182/406 (44%), Gaps = 62/406 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 41   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDEVEAL 94

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 95   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVRGTVIEVVKG--GLIL 145

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 146  DIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNRN---N 187

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L+   + +G V ++ + G F+ L 
Sbjct: 188  VVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG 234

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q  
Sbjct: 235  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-- 291

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G 
Sbjct: 292  ---FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGS 347

Query: 1385 KVKVKILKVDKEKRRISLGMKSSY--FKNDA--DNLQMSSEEESDE 1426
            +V VK++ +D E+RRISL +K +   F  DA  D  Q     E DE
Sbjct: 348  EVMVKVIDIDLERRRISLSLKQANEGFTPDAEFDPTQYGMAAEYDE 393



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 157/393 (39%), Gaps = 46/393 (11%)

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           ++K++ V    T      AI  +     D  I  G I K+++    +      +G  P  
Sbjct: 12  QAKQVAVNDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSR 71

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLV 539
           EL +    +P+ +  VG  V+  ++       R+ LS      +    + ++L +    V
Sbjct: 72  ELSIKHDVDPAEVVAVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPV 131

Query: 540 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDN 598
            G V  V    +++ +  +G+    +P    A  +E   V       G E + +++ LD 
Sbjct: 132 RGTVIEVVKGGLILDIGLRGF----LP----ASLVEMRRVRDLQPYVGRELEAKIIELDK 183

Query: 599 ESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
             +N++LS +  L  +  ++ S+  + +    V  G V +I+  G FV  LG + G    
Sbjct: 184 NRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHV 242

Query: 658 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 717
           S+         S+   VGQ V   +LDV+ +  R++LSLK +        F + H     
Sbjct: 243 SELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----- 296

Query: 718 KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----H 772
                                 IG ++ GKV +   FG  V  EE  +    I+     H
Sbjct: 297 ---------------------AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERH 335

Query: 773 HQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
            ++    V+ GS +   ++D+    R + LSLK
Sbjct: 336 VEIPEQVVQVGSEVMVKVIDIDLERRRISLSLK 368



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKED 100

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 708
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T DA F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGSEVMVKVIDIDLERRRISLSLKQANEGFTPDAEF 380


>gi|120404330|ref|YP_954159.1| 30S ribosomal protein S1 [Mycobacterium vanbaalenii PYR-1]
 gi|119957148|gb|ABM14153.1| SSU ribosomal protein S1P [Mycobacterium vanbaalenii PYR-1]
          Length = 481

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 187/414 (45%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 146/366 (39%), Gaps = 46/366 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRR 357

Query: 800 VDLSLK 805
           + LSLK
Sbjct: 358 ISLSLK 363



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ   ++ D S   E
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQ---ANEDYSEEFE 374

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            +    K  M  S    G+ +          +W+EGF
Sbjct: 375 AW----KYGMADSYDDQGNYIFPEGFDADTNEWLEGF 407


>gi|315038198|ref|YP_004031766.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
 gi|325956650|ref|YP_004292062.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
 gi|385817537|ref|YP_005853927.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
 gi|312276331|gb|ADQ58971.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
 gi|325333215|gb|ADZ07123.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
 gi|327183475|gb|AEA31922.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
          Length = 403

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDALKAGQDVKVKVIGIDNDR 258

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K ++     Q+     +NL+ GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TANLNEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 14/162 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDALKAGQDVKVKVIGIDN 256

Query: 425 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 478
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATANLNEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS 
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSI 351



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGA 213

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            FI +   +  GL H+SE+S  HVD      +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDALKAGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 108/237 (45%), Gaps = 53/237 (22%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVG-GVDGLVHISEISYKHVDKP--------SDALKA--- 243

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +                  P    +   +L+  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATANLNEG 283

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1306 SKRVEVTLKTSDS-------------RTASQSEIN------NLSNLHVGDIVIGQIK 1343
             +R+ +++K +DS             R+ +++ +N      N +   +GDI+  Q+K
Sbjct: 344  DRRISLSIKAADSNTSSSDNNSSRPRRSRNENSVNKKYMSDNDNGFALGDIIGDQLK 400



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 129/312 (41%), Gaps = 34/312 (10%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGKAIEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 515 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H       +K G +   +++ +DN+   + LS K +  +  +Q     ++++ 
Sbjct: 228 EIS--YKHVDKPSDALKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQA---TANLNE 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 688 ETGRITLSLKQS 699
              RI+LS+K +
Sbjct: 343 SDRRISLSIKAA 354


>gi|309810340|ref|ZP_07704176.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
 gi|308435705|gb|EFP59501.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
          Length = 499

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S   S + V++IGS+  L    D +I     G  V G + KVD +  LL I       + 
Sbjct: 3    STTTSPIAVNDIGSEEELLAAIDATIKHFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVIP 62

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P E+        +G  V   VL   KE K  RL+L   +        + 
Sbjct: 63   SRELSIKHDVDPGEV------VKVGDDVEALVL--QKEDKEGRLILSKKR-----AQYER 109

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    +  +V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 110  AWGTIEQIKEDDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 166

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   +           
Sbjct: 167  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF--------- 200

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +++L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ 
Sbjct: 201  ----LKELQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE 255

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ 
Sbjct: 256  VTVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVR 310

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E+  + GL H+SEL+E HV+  E +   G  + VK++ +D E+RRISL +K +
Sbjct: 311  VED-GIEGLVHISELAERHVELPEQVVTVGSDIFVKVIDIDLERRRISLSLKQA 363



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 153/356 (42%), Gaps = 31/356 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V PG+  KVG ++   VL  + 
Sbjct: 34  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDDVEALVLQKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEQIKE--DDGVVTGTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 150 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 206 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 260 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 315

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
            G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ+      AS
Sbjct: 316 EGLVHISELAERHVELPEQVVTVGSDIFVKVIDIDLERRRISLSLKQANEDGAAAS 371



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 121/280 (43%), Gaps = 51/280 (18%)

Query: 1058 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
             ILD     + P+ L E +R    + ++GK +   ++ ++K +  + L  R + +     
Sbjct: 136  LILDIGLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLE----- 190

Query: 1111 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1167
                 ++   TF+ E   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 191  --QTQSEVRTTFLKELQKGQVRSGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 245

Query: 1168 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1227
            P    + GQ            V  +VL++         V LSL+++ +            
Sbjct: 246  PSEVVEVGQE-----------VTVEVLDVDMDRE---RVSLSLKATQE------------ 279

Query: 1228 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1287
                P +H  +   +    +V G V  +   G F+ +   ++  V +S L++ +VE PE+
Sbjct: 280  ---DPWQHFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQ 334

Query: 1288 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1327
               +G  +  +V+ ++   +R+ ++LK ++   A+ SE +
Sbjct: 335  VVTVGSDIFVKVIDIDLERRRISLSLKQANEDGAAASEFD 374


>gi|257792261|ref|YP_003182867.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM 2243]
 gi|317490189|ref|ZP_07948677.1| S1 RNA binding domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325833424|ref|ZP_08165873.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
 gi|257476158|gb|ACV56478.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243]
 gi|316910683|gb|EFV32304.1| S1 RNA binding domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325485348|gb|EGC87817.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
          Length = 405

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 178/384 (46%), Gaps = 74/384 (19%)

Query: 1103 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI-----LSGVG----GLV--------- 1144
            F+D ISD+ ++   D   T   EGD+V G + KI     L  +G    G++         
Sbjct: 12   FED-ISDEQMNAMIDGTLTEFDEGDLVDGTVVKIEHDEVLVDIGFKSEGVIPSRELSIRK 70

Query: 1145 -------VQIGPHLYGRVHFTELKN--ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1195
                   V++G  +   V   E K+  + +S   + Y+         +  G+ V  +V+E
Sbjct: 71   DADPSDIVELGEKIEALVLQKEDKDGRLILSKKRAEYERAWIRVEEKFKAGEVVTGEVIE 130

Query: 1196 ISRTVRGTFHVELSLR----SSLDGMSSTNSSD--LSTDVDT------------------ 1231
            +   V+G   +++ LR    +SL  +      D  L T+++                   
Sbjct: 131  V---VKGGLILDIGLRGFLPASLVDLRRVKDLDMYLGTEIEARVIEMDRNRNNVVLSRRV 187

Query: 1232 ---PGKHLEKIE---DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1285
                G+  E+ E    LS  M ++G V ++   G F+ L   +D  V +S LS  +V  P
Sbjct: 188  LLEEGRKNERAEILAKLSKGMRLKGTVSSIVDFGAFVDLG-GIDGLVHISELSWNHVNHP 246

Query: 1286 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1345
             +   +G  V   VL V+   +R+ + LK    +T     +  + +  VG IV G++ ++
Sbjct: 247  SEVVKVGDEVEVEVLDVDLQRERISLGLK----QTTEDPWVKLVESYPVGTIVDGKVTKI 302

Query: 1346 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              +G FI +   ++ GL H+SE++  H+D    + +AG++VKVK+++++ E+RRISL MK
Sbjct: 303  VPFGAFIEL-GQSIEGLVHISEMAMRHIDTPAQVVKAGDEVKVKVMEINPERRRISLSMK 361

Query: 1406 SSYFKNDADNLQMSSEEESDEAIE 1429
            ++     AD   +  E E DE+I+
Sbjct: 362  AAA----AD---LGFEIEVDESIQ 378



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
           GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   VL V  
Sbjct: 207 GMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDL 265

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           + +RI++  K+T     + ++ SY   T   I  G +TKI   G F+     ++G    S
Sbjct: 266 QRERISLGLKQTTEDPWVKLVESYPVGT---IVDGKVTKIVPFGAFIELGQSIEGLVHIS 322

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           E+ +     P+ +   G  VK ++M   P  RRI+LS 
Sbjct: 323 EMAMRHIDTPAQVVKAGDEVKVKVMEINPERRRISLSM 360



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 74/371 (19%), Positives = 150/371 (40%), Gaps = 54/371 (14%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G + KIE     V      +G  P  EL +    +PS +  +G+ ++  ++      
Sbjct: 36  LVDGTVVKIEHDEVLVDIGFKSEGVIPSRELSIRKDADPSDIVELGEKIEALVLQKEDKD 95

Query: 514 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
            R+ LS     +     RV E    K G +V+G V  V    +++ +  +G+   ++   
Sbjct: 96  GRLILSKKRAEYERAWIRVEEK--FKAGEVVTGEVIEVVKGGLILDIGLRGFLPASLVDL 153

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIH 626
                L+        +  G E + +++ +D   +N++LS +  L    +   ++  + + 
Sbjct: 154 RRVKDLD--------MYLGTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILAKLS 205

Query: 627 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 686
               + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+
Sbjct: 206 KGMRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVD 264

Query: 687 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 746
            +  RI+L LKQ+                                +K VE + +G++++G
Sbjct: 265 LQRERISLGLKQTTEDPW---------------------------VKLVESYPVGTIVDG 297

Query: 747 KVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERL 799
           KV +   FG  +   +   + G +   ++A          V++G  ++  ++++    R 
Sbjct: 298 KVTKIVPFGAFIELGQS--IEGLVHISEMAMRHIDTPAQVVKAGDEVKVKVMEINPERRR 355

Query: 800 VDLSLKTVFID 810
           + LS+K    D
Sbjct: 356 ISLSMKAAAAD 366


>gi|58337265|ref|YP_193850.1| 30S ribosomal protein S1 [Lactobacillus acidophilus NCFM]
 gi|227903850|ref|ZP_04021655.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
 gi|58254582|gb|AAV42819.1| 30S Ribosomal protein S1 [Lactobacillus acidophilus NCFM]
 gi|227868737|gb|EEJ76158.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
          Length = 403

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +V+G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGSFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDR 258

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K ++     Q+     ++L+ GDI  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDIFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPNDRRISLSIKAA 354



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 14/162 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G VV+GKV  + +FG+ +   GGV  L  +  +S   + KP    KVG ++  +V+G+ +
Sbjct: 198 GDVVEGKVSRLTNFGSFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDN 256

Query: 425 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 478
            R  I+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDIFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
              SE+      +PS +  VGQ VK ++++  P  RRI+LS 
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPNDRRISLSI 351



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD+V G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGS 213

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            FI +   +  GL H+SE+S  HVD    + + G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 53/237 (22%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD+V G++S++ +   G  + +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVVEGKVSRLTNF--GSFIDVG-GVDGLVHISEISYKHVDKP--------SDVLK---V 243

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             I +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPN 343

Query: 1306 SKRVEVTLKTSDS-------------RTASQSEIN------NLSNLHVGDIVIGQIK 1343
             +R+ +++K +DS             R+ +++ +N      N +   +GDI+  Q+K
Sbjct: 344  DRRISLSIKAADSNSSSSDNHNSRPRRSRNENTVNKKYMSDNDNGFALGDIIGDQLK 400



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 130/312 (41%), Gaps = 34/312 (10%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNAIEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 515 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS   +++  R    D V     +G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGSFIDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             +  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 688 ETGRITLSLKQS 699
              RI+LS+K +
Sbjct: 343 NDRRISLSIKAA 354


>gi|383808184|ref|ZP_09963736.1| 30S ribosomal protein S1 [Rothia aeria F0474]
 gi|383449142|gb|EID52087.1| 30S ribosomal protein S1 [Rothia aeria F0474]
          Length = 484

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 185/416 (44%), Gaps = 66/416 (15%)

Query: 1004 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1057
            +S     + +++IG++  F +  D +I     G  V+G V KVD++  LL I    +  +
Sbjct: 1    MSTNIPQVAINDIGNEEEFLKAVDETIKYFNDGDLVSGQVVKVDHDEVLLDIGYKTEGVI 60

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTG----HVLSINKEKKLLRLVLRPFQDGISDKTVD 1113
                    PS     +     G+ VT       L + KE K  RL+L   +        D
Sbjct: 61   --------PSRELSIKHDVDPGEVVTVGDEIEALVLTKEDKEGRLILSKKRAQYERAWGD 112

Query: 1114 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            I        I E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------IKENDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
                          Q ++ K++E+ +      +V LS R+ L+   S   S         
Sbjct: 164  --------------QQLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSTF------- 199

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
                  +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 200  ------LNQLEKGQVRDGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLF 1351
            + V   VL V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F
Sbjct: 253  QKVTVEVLEVDLDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAF 307

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +E+  + GL H+SEL+  HVD  + +   GE++ VKI+ +D ++RRISL +K +
Sbjct: 308  VRVED-GIEGLVHISELAVRHVDLADQVVSVGEELFVKIIDIDMDRRRISLSLKQA 362



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   VL 
Sbjct: 203 LEKGQVRDGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEVLE 261

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G  
Sbjct: 262 VDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +        +  VG+ +  +I+      RRI+LS 
Sbjct: 319 HISELAVRHVDLADQVVSVGEELFVKIIDIDMDRRRISLSL 359



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 145/366 (39%), Gaps = 46/366 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  +  G + K++     +      +G  P  EL +    +P  +  VG  ++  +++ 
Sbjct: 31  NDGDLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDEIEALVLTK 90

Query: 510 IPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P
Sbjct: 91  EDKEGRLILSKKRAQYERAWGDIEKIKENDGVVTGTVIEVVKGGLILDIGLRGF----LP 146

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + 
Sbjct: 147 ----ASLVEMRRVRDLAPYIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNQ 202

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+
Sbjct: 203 LEKGQVRDGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEVLE 261

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +      A F + H L                          G ++
Sbjct: 262 VDLDRERVSLSLKATQEDPWQA-FARTHAL--------------------------GQIV 294

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  E+  +    I+     H  LA   V  G  +   I+D+    R 
Sbjct: 295 PGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLADQVVSVGEELFVKIIDIDMDRRR 354

Query: 800 VDLSLK 805
           + LSLK
Sbjct: 355 ISLSLK 360



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 159/351 (45%), Gaps = 37/351 (10%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G+V+ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 33  GDLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDEIEALVLTKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKIKE-NDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNQLE 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 205 KGQVRDGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVTVE 258

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 259 VLEVDLDRERVSLSLK-----ATQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 651 LTGFAPRSK-AVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+ AV  +  DL+ +   VG+ +   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAV--RHVDLADQVVSVGEELFVKIIDIDMDRRRISLSLKQA 362


>gi|326332716|ref|ZP_08198978.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
 gi|325949497|gb|EGD41575.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
          Length = 493

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 171/383 (44%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +PSE+ E      +G  V   
Sbjct: 42   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVE------VGDKVEAL 95

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 96   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEQVKEEDGVVEGAVIEVVKG--GLIL 146

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 147  DIGLRGFLPASLVEMRRVRDLQPYVG---------------QTLEAKIIELDKNRN---N 188

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S       T              L    I +G V ++ + G F+ L 
Sbjct: 189  VVLSRRAWLEQTQSEVRHGFLTQ-------------LQKGQIRKGVVSSIVNFGAFVDLG 235

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 236  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDP 289

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
              + +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + +  +
Sbjct: 290  WQHFARTHQIGQIVPGKVTKLVPFGSFVRVEE-GIEGLVHISELAERHVEIPEQVVQVND 348

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
             V VKI+ +D E+RRISL +K +
Sbjct: 349  DVMVKIIDIDLERRRISLSLKQA 371



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 147/355 (41%), Gaps = 31/355 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 42  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVEVGDKVEALVLQKED 101

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E     +  G + ++ K G  +    G++GF P S
Sbjct: 102 KEGRLILSKKRAQYERAWGTIEQVKEEDG--VVEGAVIEVVKGGLILDI--GLRGFLPAS 157

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 158 LVEMRRVRDLQP----YVGQTLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHGFLTQLQ 213

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 214 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 267

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  Q     A       +V G V  ++  G FVR    + 
Sbjct: 268 VLDVDMDRERVSLSLKATQEDPWQHF---ARTHQIGQIVPGKVTKLVPFGSFVRVEEGIE 324

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--CCSSTD 705
           G    S+  +       +   V   V   I+D++ E  RI+LSLKQ+    +STD
Sbjct: 325 GLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQANETVTSTD 379


>gi|417931599|ref|ZP_12574964.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182B-JCVI]
 gi|340775542|gb|EGR97595.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182B-JCVI]
          Length = 498

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 181/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LH 221

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL HVSEL+E HV+  E +    +   VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDAMVKIIDIDLDRRRISLSLKQA 382



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   V       I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDAMVKIIDIDLDRRRISLSLKQA 382


>gi|256832461|ref|YP_003161188.1| RNA binding S1 domain-containing protein [Jonesia denitrificans DSM
            20603]
 gi|256685992|gb|ACV08885.1| RNA binding S1 domain protein [Jonesia denitrificans DSM 20603]
          Length = 488

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 188/415 (45%), Gaps = 64/415 (15%)

Query: 1004 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1053
            ++I    + V++IG++  F    D +I     G  V G + KVD +  LL I       +
Sbjct: 1    MTISTPQVAVNDIGTEEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVI 60

Query: 1054 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1113
             ++   +    +P E+       ++G +V   VL   KE K  RL+L   +        +
Sbjct: 61   PSRELSIKHDVDPGEV------VNVGDSVEALVL--QKEDKEGRLILSKKR-----AQYE 107

Query: 1114 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1173
             +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +
Sbjct: 108  RAWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE 165

Query: 1174 EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1233
                           ++ K++E+ +      +V LS R+ L+    T S   ST + T  
Sbjct: 166  ---------------IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT-- 202

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
                    L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+
Sbjct: 203  --------LQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQ 253

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFI 1352
             V   VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+
Sbjct: 254  EVTVEVLDVDFDRERVSLSLKAT-----QEDPWQTFARTHAIGQVVPGKVTKLVPFGAFV 308

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             +E+  + GL H+SEL+  HVD  E +   G+   VK++ +D E+RRISL +K +
Sbjct: 309  RVED-GIEGLVHISELAVRHVDLPEQVVNVGDDAFVKVIDIDLERRRISLSLKQA 362



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 203 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 261

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 262 VDFDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +     P  + +VG     +++      RRI+LS 
Sbjct: 319 HISELAVRHVDLPEQVVNVGDDAFVKVIDIDLERRRISLSL 359



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 146/375 (38%), Gaps = 46/375 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P  + +VG 
Sbjct: 22  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVNVGD 81

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            V+  ++       R+ LS        +   + K+     +V+G V  V    +++ +  
Sbjct: 82  SVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDIGL 141

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 142 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 193

Query: 617 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S     +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 194 EVRSTFLQTLQKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
           Q V   +LDV+ +  R++LSLK +       +F + H                       
Sbjct: 253 QEVTVEVLDVDFDRERVSLSLK-ATQEDPWQTFARTH----------------------- 288

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 790
               IG V+ GKV +   FG  V  E+  +    I+     H  L    V  G      +
Sbjct: 289 ---AIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVNVGDDAFVKV 345

Query: 791 LDVAKAERLVDLSLK 805
           +D+    R + LSLK
Sbjct: 346 IDIDLERRRISLSLK 360



 Score = 48.1 bits (113), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 153/350 (43%), Gaps = 35/350 (10%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG  +   VL  + 
Sbjct: 33  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVNVGDSVEALVLQKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 259 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 314

Query: 652 TGFAPRSK-AVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+ AV  +  DL  +   VG      ++D++ E  RI+LSLKQ+
Sbjct: 315 EGLVHISELAV--RHVDLPEQVVNVGDDAFVKVIDIDLERRRISLSLKQA 362


>gi|452990290|emb|CCQ98504.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
            [Clostridium ultunense Esp]
          Length = 440

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 179/383 (46%), Gaps = 54/383 (14%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            +V +G  +TG V +++ + AL+ +    +A L I  S      +++ +   H+G  +   
Sbjct: 66   EVQVGDILTGKVSRIEEKQALIDVGFKYEAILPI--SEVSSLHIEKIEDVLHLGDEIEVK 123

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            V   N EK  L +  R      + + +    +N +TF  E  IV   + K     GGLV 
Sbjct: 124  VKKFNPEKDELVVSKRAVAAEKAWEVLSQRFENGETF--ETTIVD--VVK-----GGLVA 174

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             +G  L G +  ++++   V D             S Y +G+ +K KV+E+ R       
Sbjct: 175  DVG--LRGFIPASQVERNYVED------------FSDY-KGKPLKVKVIELDRE---NNR 216

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+  +     ++             +  L    +V+G V+ +T  G F+ L 
Sbjct: 217  VILSHRAVLEEEAERRKKEV-------------LNRLEAGQVVEGRVERITDFGAFVDLG 263

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS---RTAS 1322
              +D  + +S LS  +VE       +G +V  +VL V+  ++R+ ++LK +       A+
Sbjct: 264  -GVDGLIHISELSWDHVEKATDAVSVGDIVKVKVLKVDRENERISLSLKATQPSPWEKAA 322

Query: 1323 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1382
            QS       +  GD+V G ++R+ S+G F+ +    + GL HVS++S   V     + + 
Sbjct: 323  QS-------IKPGDVVKGIVRRLPSFGAFVEL-MPGVEGLVHVSQISRKRVGTPGEVLKE 374

Query: 1383 GEKVKVKILKVDKEKRRISLGMK 1405
            G++V+VK+L  + E +RISL MK
Sbjct: 375  GQEVEVKVLDFNLEDKRISLSMK 397



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            L+ L  G +V G+++R+  +G F+ +   +  GL H+SELS DHV+        G+ VKV
Sbjct: 237  LNRLEAGQVVEGRVERITDFGAFVDLGGVD--GLIHISELSWDHVEKATDAVSVGDIVKV 294

Query: 1389 KILKVDKEKRRISLGMKSS 1407
            K+LKVD+E  RISL +K++
Sbjct: 295  KVLKVDRENERISLSLKAT 313



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 155/368 (42%), Gaps = 29/368 (7%)

Query: 343 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 402
             G  +A++    V    +V+ G ++ GKV  ++   A++      +A+ P+  +S   I
Sbjct: 48  GNGPEEATSVNEAVSAVPEVQVGDILTGKVSRIEEKQALIDVGFKYEAILPISEVSSLHI 107

Query: 403 VKPGKKFKVGAELVFRV--LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
            K      +G E+  +V     +   + V+ +    +    +LS   E  +   T   I 
Sbjct: 108 EKIEDVLHLGDEIEVKVKKFNPEKDELVVSKRAVAAEKAWEVLSQRFENGETFETT--IV 165

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASR 514
            + K G       G++GF P S++  +   E  S Y  G+ +K +++      + +  S 
Sbjct: 166 DVVKGGLVADV--GLRGFIPASQVERNY-VEDFSDYK-GKPLKVKVIELDRENNRVILSH 221

Query: 515 RINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DH 573
           R  L    +  +    + ++ G +V G V+ +T     V +   G   G I    L+ DH
Sbjct: 222 RAVLEEEAERRKKEVLNRLEAGQVVEGRVERITDFGAFVDL---GGVDGLIHISELSWDH 278

Query: 574 LEHATVMKSV---IKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 630
           +E AT   SV   +K      ++L +D E+  + LS K +  +  ++    A  I P  V
Sbjct: 279 VEKATDAVSVGDIVKV-----KVLKVDRENERISLSLKATQPSPWEKA---AQSIKPGDV 330

Query: 631 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
           V G V  +   G FV  +  + G    S+    +     +    GQ V   +LD N E  
Sbjct: 331 VKGIVRRLPSFGAFVELMPGVEGLVHVSQISRKRVGTPGEVLKEGQEVEVKVLDFNLEDK 390

Query: 691 RITLSLKQ 698
           RI+LS+K+
Sbjct: 391 RISLSMKE 398



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 304 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 363
             + IS+++ + V K       G  V+V++L         +  LKA+           +K
Sbjct: 267 GLIHISELSWDHVEKATDAVSVGDIVKVKVLKVDRENERISLSLKATQPSPWEKAAQSIK 326

Query: 364 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--G 421
           PG VVKG V  + SFGA V+   GV+ L  +  +S   +  PG+  K G E+  +VL   
Sbjct: 327 PGDVVKGIVRRLPSFGAFVELMPGVEGLVHVSQISRKRVGTPGEVLKEGQEVEVKVLDFN 386

Query: 422 VKSKRITVTHKK 433
           ++ KRI+++ K+
Sbjct: 387 LEDKRISLSMKE 398



 Score = 40.4 bits (93), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 1320 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
            T+    ++ +  + VGDI+ G++ R+E     I +       +  +SE+S  H++ IE +
Sbjct: 55   TSVNEAVSAVPEVQVGDILTGKVSRIEEKQALIDV-GFKYEAILPISEVSSLHIEKIEDV 113

Query: 1380 YRAGEKVKVKILKVDKEK 1397
               G++++VK+ K + EK
Sbjct: 114  LHLGDEIEVKVKKFNPEK 131


>gi|340359951|ref|ZP_08682422.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 448 str. F0400]
 gi|339883718|gb|EGQ73550.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 448 str. F0400]
          Length = 484

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 188/412 (45%), Gaps = 66/412 (16%)

Query: 1008 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1057
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERVKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHL 1236
                       ++ K++E+ +      +V LS R+ L+   S   +S L T         
Sbjct: 169  -----------LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRTSFLQT--------- 205

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
                 L    I  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V 
Sbjct: 206  -----LQKGQIRTGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVT 259

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1355
              VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E
Sbjct: 260  VEVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVE 314

Query: 1356 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  + GL H+SEL++ HV+  E + + G++V VK++ +D ++RRISL +K +
Sbjct: 315  D-GIEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G +  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQIRTGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 264

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSL 362



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 151/349 (43%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERVKEE-DGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R S    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRTSFLQTLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQIRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+          +   VG  V   ++D++ +  RI+LSLKQ+
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQA 365



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 143/369 (38%), Gaps = 60/369 (16%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G + K+++    +      +G     EL +    +P  +  VG  ++  ++      
Sbjct: 38  IVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKEDKE 97

Query: 514 RRINLSFMMKP--------TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 565
            R+ LS              RV E+D V  GS++      V    +++ +  +G+    +
Sbjct: 98  GRLLLSKKRAQYERAWGTIERVKEEDGVVTGSVIE-----VVKGGLILDIGLRGF----L 148

Query: 566 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL-PSDAS 623
           P    A  +E   V       G E + +++ LD   +N++LS +  L  +  ++  S   
Sbjct: 149 P----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRTSFLQ 204

Query: 624 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
            +    +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L
Sbjct: 205 TLQKGQIRTGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 263

Query: 684 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 743
           DV+ +  R++LSLK +      A F + H                           IG V
Sbjct: 264 DVDFDRERVSLSLKATQEDPWQA-FARTH--------------------------AIGQV 296

Query: 744 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKA 796
           + GKV +   FG  V  E+   + G +   +LA   VE        G  +   ++D+   
Sbjct: 297 VPGKVTKLVPFGAFVRVEDG--IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLD 354

Query: 797 ERLVDLSLK 805
            R + LSLK
Sbjct: 355 RRRISLSLK 363


>gi|118472813|ref|YP_888124.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|399988146|ref|YP_006568496.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|441210769|ref|ZP_20974767.1| 30S ribosomal protein S1 [Mycobacterium smegmatis MKD8]
 gi|118174100|gb|ABK74996.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|399232708|gb|AFP40201.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|440626699|gb|ELQ88527.1| 30S ribosomal protein S1 [Mycobacterium smegmatis MKD8]
          Length = 479

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 149/376 (39%), Gaps = 46/376 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 804 LKTVFIDRFREANSNR 819
           LK    D   E + ++
Sbjct: 362 LKQANEDYTEEFDPSK 377



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|317124795|ref|YP_004098907.1| 30S ribosomal protein S1 [Intrasporangium calvum DSM 43043]
 gi|315588883|gb|ADU48180.1| SSU ribosomal protein S1P [Intrasporangium calvum DSM 43043]
          Length = 493

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 175/387 (45%), Gaps = 58/387 (14%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKA 1081
            D + G  V G + KVD +  LL I       + ++   +    +P E+        +G  
Sbjct: 34   DFNDGDIVEGRIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEI------VKVGDE 87

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
            V   VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  
Sbjct: 88   VEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGVVTGTVIEVVKG-- 138

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
            GL++ IG   +      E++ +    P  G +               ++ K++E+ +   
Sbjct: 139  GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE---------------IEAKIIELDKNRN 183

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
               +V LS R+ L+   S   +               +++L    + QG V ++ + G F
Sbjct: 184  ---NVVLSRRAWLEQTQSEVRTTF-------------LKELQKGQVRQGVVSSIVNFGAF 227

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            + L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +     
Sbjct: 228  VDLG-GVDGLVHVSELSWKHIDHPSEVVEVGTDVTVEVLDVDMDRERVSLSLKAT----- 281

Query: 1322 SQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
             +    + +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+E HV+  E + 
Sbjct: 282  QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAERHVELPEQVV 340

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSS 1407
               +++ VK++ +D E+RRISL +K +
Sbjct: 341  NVADEIFVKVIDIDLERRRISLSLKQA 367



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 156/363 (42%), Gaps = 31/363 (8%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           T  D   G +V+G+++ VD    ++      + + P   +S    V PG+  KVG E+  
Sbjct: 31  TIKDFNDGDIVEGRIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEIVKVGDEVEA 90

Query: 418 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
            VL  + K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G+
Sbjct: 91  LVLQKEDKEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GL 146

Query: 476 QGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRV 527
           +GF P S  E+      +P    +VG+ ++ +I+      +++  SRR  L       R 
Sbjct: 147 RGFLPASLVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 202

Query: 528 SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 586
           +    ++ G +  GVV  +      V +   G   G +    L+  H++H +    V++ 
Sbjct: 203 TFLKELQKGQVRQGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEV 256

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCF 644
           G +   ++L +D +   + LS K +  +  Q      +  H    VV G V  ++  G F
Sbjct: 257 GTDVTVEVLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAF 312

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
           VR    + G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+   S 
Sbjct: 313 VRVEDGIEGLVHISELAERHVELPEQVVNVADEIFVKVIDIDLERRRISLSLKQANDESV 372

Query: 705 DAS 707
             S
Sbjct: 373 PVS 375


>gi|422518357|ref|ZP_16594425.1| 30S ribosomal protein S1 [Propionibacterium acnes HL074PA1]
 gi|313772539|gb|EFS38505.1| 30S ribosomal protein S1 [Propionibacterium acnes HL074PA1]
          Length = 498

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 181/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G         
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG--------- 183

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V L  R+ L+   S    +              + 
Sbjct: 184  ------QEIEAKIIELDKNRN---NVVLPRRAWLEQTQSEVRQNF-------------LH 221

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 222  QLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVL 280

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +E+  +
Sbjct: 281  DVDMDRERVSLSLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GI 334

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL HVSEL+E HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 335  EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VGQ ++ +I+      +++   RR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLPRRAWLEQTQSEVRQNFLHQLQ 224

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|383817893|ref|ZP_09973194.1| 30S ribosomal protein S1 [Mycobacterium phlei RIVM601174]
 gi|383339724|gb|EID18052.1| 30S ribosomal protein S1 [Mycobacterium phlei RIVM601174]
          Length = 477

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 150/380 (39%), Gaps = 46/380 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRR 357

Query: 800 VDLSLKTVFIDRFREANSNR 819
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|403737731|ref|ZP_10950459.1| 30S ribosomal protein S1 [Austwickia chelonae NBRC 105200]
 gi|403191843|dbj|GAB77229.1| 30S ribosomal protein S1 [Austwickia chelonae NBRC 105200]
          Length = 485

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 67/414 (16%)

Query: 1011 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1064
            + +++IGS+  L    D +I     G  V G + KVD +  LL I    +  +       
Sbjct: 10   IAINDIGSEEDLLAAIDATIKHFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVI------- 62

Query: 1065 EPSELQEFQRRFHIGKAVTG----HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
             PS     +     G+ VT       L + KE K  RL+L   +        + +   ++
Sbjct: 63   -PSRELSIKHDVDPGEVVTVGDEVEALVLQKEDKEGRLILSKKR-----AQYERAWGTIE 116

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 117  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 167

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+   S   +               ++
Sbjct: 168  --------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF-------------LK 203

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            +L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 204  ELQKGQVRTGQVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 262

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ +++  +
Sbjct: 263  DVDMDRERVSLSLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVRVDD-GI 316

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
             GL H+SEL+E HV+  E +   G  + VK++ +D E+RRISL +K +   NDA
Sbjct: 317  EGLVHISELAERHVELPEQVVTVGTDIFVKVIDIDLERRRISLSLKQA---NDA 367



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 6/162 (3%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           +++ G V  G+V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL
Sbjct: 204 ELQKGQVRTGQVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 262

Query: 421 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
            V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G 
Sbjct: 263 DVDMDRERVSLSLKATQEDPWQHFARTHAIGQ---VVPGKVTKLVPFGAFVRVDDGIEGL 319

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
              SEL       P  +  VG  +  +++      RRI+LS 
Sbjct: 320 VHISELAERHVELPEQVVTVGTDIFVKVIDIDLERRRISLSL 361



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 155/362 (42%), Gaps = 35/362 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 35  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDEVEALVLQKED 94

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 150

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 151 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQ 206

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + +G V  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRTGQVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 260

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 261 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAFVRVDDGI 316

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ    + DA+    
Sbjct: 317 EGLVHISELAERHVELPEQVVTVGTDIFVKVIDIDLERRRISLSLKQ----ANDAAVATN 372

Query: 712 HF 713
            F
Sbjct: 373 EF 374



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 135/309 (43%), Gaps = 54/309 (17%)

Query: 1031 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1081
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 109  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 167

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1138
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G++S I++
Sbjct: 168  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELQKGQVRTGQVSSIVN 220

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
               G  V +G  + G VH +EL    +  P    + GQ            V  +VL++  
Sbjct: 221  F--GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQE-----------VTVEVLDVDM 266

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LSL+++ +                P +H  +   +    +V G V  +   
Sbjct: 267  DRE---RVSLSLKATQE---------------DPWQHFARTHAIG--QVVPGKVTKLVPF 306

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   ++  V +S L++ +VE PE+   +G  +  +V+ ++   +R+ ++LK ++ 
Sbjct: 307  GAFVRVDDGIEGLVHISELAERHVELPEQVVTVGTDIFVKVIDIDLERRRISLSLKQAND 366

Query: 1319 RTASQSEIN 1327
               + +E +
Sbjct: 367  AAVATNEFD 375


>gi|375141664|ref|YP_005002313.1| 30S ribosomal protein S1 [Mycobacterium rhodesiae NBB3]
 gi|359822285|gb|AEV75098.1| ribosomal protein S1 [Mycobacterium rhodesiae NBB3]
          Length = 482

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 187/414 (45%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVNVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 151/380 (39%), Gaps = 46/380 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVNVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRR 357

Query: 800 VDLSLKTVFIDRFREANSNR 819
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVNVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407


>gi|433641768|ref|YP_007287527.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070008]
 gi|432158316|emb|CCK55607.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070008]
          Length = 481

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                + +L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  ++
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLK 805
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|340626635|ref|YP_004745087.1| putative ribosomal protein S1 RPSA [Mycobacterium canettii CIPT
            140010059]
 gi|433626722|ref|YP_007260351.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140060008]
 gi|340004825|emb|CCC43970.1| putative ribosomal protein S1 RPSA [Mycobacterium canettii CIPT
            140010059]
 gi|432154328|emb|CCK51560.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140060008]
          Length = 481

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                + +L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNNLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  ++
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLK 805
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|389611195|dbj|BAM19209.1| unknown unsecreted protein [Papilio polytes]
          Length = 111

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 68/103 (66%)

Query: 1695 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1754
            +  + + A LE   G A+R  ++ + +L+ YP R D+ ++Y+D  I+  D++ IR L ER
Sbjct: 5    VSLLVRFAQLERGCGAAERAAALLDHVLAAYPHRVDVAALYVDMLIKSNDIEQIRQLMER 64

Query: 1755 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797
              S  LP +KMK LFKK++E E+ +G  +++E ++++A+E++E
Sbjct: 65   MTSQKLPARKMKVLFKKWIEVEEKIGNHQQVENIRKRAVEFIE 107


>gi|395240782|ref|ZP_10417806.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
 gi|394475564|emb|CCI87783.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
          Length = 400

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 95/161 (59%), Gaps = 6/161 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +V+G V  +T+ G FI +   +D  V +S +S  +++ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDDDR 258

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K ++     Q+     S+L+ GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TSSLNEGDVFEGEVKSLTNFGAFVEVTD-GIQGLVHVS 313

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            E+S  HVD    + + G+ VKVK+L +D  ++RISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSIKAT 354



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 10/160 (6%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G VV+GKV  + +FGA +   GGV  L  +  +S   I KP    +VG ++  +V+G+  
Sbjct: 198 GDVVEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDD 256

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 480
            R    H+ +L   K    S + +AT  L    +  G +  +   G FV   +G+QG   
Sbjct: 257 DR----HRISL-SIKQTEPSPFEQATSSLNEGDVFEGEVKSLTNFGAFVEVTDGIQGLVH 311

Query: 481 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
            SE+      +PS +  VGQ VK ++++  P+ +RI+LS 
Sbjct: 312 VSEISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSI 351



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 95/439 (21%), Positives = 188/439 (42%), Gaps = 71/439 (16%)

Query: 922  KKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIG 980
            K+    +VG +V  E+ +++  +L +     G  G I   E   D++    +L    K G
Sbjct: 13   KQMQGVEVGDIVDVEVLDVEDGQLDVGVVNAGVEGVITRREFTTDRN---ADLTELVKPG 69

Query: 981  QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1040
            +T+ A ++ ++        F + ++     L   E   KL   + D   G  + G V   
Sbjct: 70   ETIKALVLKRAGGDKENGEFFFSVT----RLKEREAFDKL---QKDFEEGNAIEGTVTSS 122

Query: 1041 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1100
                 L+ +         ++ S Y  S+L+ +     IGK +   +  I+  K   RL+L
Sbjct: 123  VRGGLLVDVGTRGFLPASLISSRY-VSDLKPY-----IGKTMKLKITEIDPNKN--RLIL 174

Query: 1101 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1160
               +D + ++  + + D + + +  GD+V G++S++ +   G  + +G  + G VH +E+
Sbjct: 175  -SHKDLVEEEREE-AFDKVASQLVVGDVVEGKVSRLTNF--GAFIDVG-GVDGLVHISEI 229

Query: 1161 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1220
                +  P         D L     GQ VK KV+ I         + LS++ +       
Sbjct: 230  SYKHIDKP--------SDALR---VGQDVKVKVIGIDDD---RHRISLSIKQT------- 268

Query: 1221 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1280
                       P    +    L+   + +G VK++T+ G F+ ++  +   V +S +S+ 
Sbjct: 269  ----------EPSPFEQATSSLNEGDVFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNK 318

Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE--------------- 1325
            +V+ P     +G+ V  +VL+++P  KR+ +++K ++   AS+S                
Sbjct: 319  HVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSIKATEENAASESARPRRPRTDNSVNKKY 378

Query: 1326 INNLSN-LHVGDIVIGQIK 1343
            +NN  N   +GDI+  Q+K
Sbjct: 379  MNNDDNGFALGDIIGDQLK 397



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 152/373 (40%), Gaps = 65/373 (17%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 529
           GV+G   R E   D   + + +   G+ +K  ++      +  N  F    TR+ E    
Sbjct: 44  GVEGVITRREFTTDRNADLTELVKPGETIKALVLKRAGGDKE-NGEFFFSVTRLKEREAF 102

Query: 530 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGT-IPTEHLADHLEHATVMKSVIK 585
           D L K    G+ + G V       ++V V  +G+   + I + +++D       +K  I 
Sbjct: 103 DKLQKDFEEGNAIEGTVTSSVRGGLLVDVGTRGFLPASLISSRYVSD-------LKPYIG 155

Query: 586 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGC 643
              +  ++  +D   + L+LS K  L+   ++   D  AS +    VV G V  +   G 
Sbjct: 156 KTMKL-KITEIDPNKNRLILSHK-DLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGA 213

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           F+  +G + G    S+         S    VGQ V+  ++ ++ +  RI+LS+KQ+  S 
Sbjct: 214 FID-VGGVDGLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDDDRHRISLSIKQTEPS- 271

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
               F Q    L E                       G V EG+V    +FG   +F E 
Sbjct: 272 ---PFEQATSSLNE-----------------------GDVFEGEVKSLTNFG---AFVEV 302

Query: 764 SD-VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 815
           +D + G +   +++   V+        G  ++  +L++  +E+ + LS+K        E 
Sbjct: 303 TDGIQGLVHVSEISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSIKAT------EE 356

Query: 816 NSNRQAQKKKRKR 828
           N+  ++ + +R R
Sbjct: 357 NAASESARPRRPR 369



 Score = 40.4 bits (93), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 127/312 (40%), Gaps = 34/312 (10%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           E+VKPG+  K    LV +  G   +        T +K + A      +  +     G +T
Sbjct: 64  ELVKPGETIKA---LVLKRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNAIEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        SS Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SSRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 515 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS   +++  R    D V     +G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H       ++ G +   +++ +D++   + LS K +  +  +Q     S ++ 
Sbjct: 228 EIS--YKHIDKPSDALRVGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQA---TSSLNE 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKVGQNVKVKVLNIDP 342

Query: 688 ETGRITLSLKQS 699
              RI+LS+K +
Sbjct: 343 SEKRISLSIKAT 354


>gi|404329832|ref|ZP_10970280.1| 30S ribosomal protein S1 [Sporolactobacillus vineae DSM 21990 =
            SL153]
          Length = 387

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 173/387 (44%), Gaps = 64/387 (16%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
            +++G  V G V KV+ + AL+ +   +   L I  S      +++     H G  +T  +
Sbjct: 15   LNVGDVVNGKVTKVEEKHALVDVGYKVDGILPI--SELSSLHVEKVSDLLHEGDDITVKI 72

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLV 1144
              +  ++ +L           S + VD     D+++      +     I+ ++ G  GLV
Sbjct: 73   TKMEDDELVL-----------SKREVDADKAWDDLEEKYKNKETFSVEIADVVKG--GLV 119

Query: 1145 VQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1199
            V +G     P      HF E                     S Y +G+ +  K++E+ R 
Sbjct: 120  VDLGVRGFIPASLVERHFVE-------------------DFSDY-KGKPLDVKIVELDRE 159

Query: 1200 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1259
             R      LS R+ LD  +               K  E +  +    +++G V+ +T  G
Sbjct: 160  KRKVI---LSHRAVLDEEADK-------------KKAETLASIKEGDVIEGTVQRLTDFG 203

Query: 1260 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1319
             F+ +   +D  V +S L+  +VE+P +    G  V  +VLSV+P S+R+ +++K +   
Sbjct: 204  AFVDIG-GVDGLVHISQLAHYHVETPSEVVSEGDKVKVKVLSVDPESERISLSIKATQPG 262

Query: 1320 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
                ++      +H GD + G +KR+  +G F+ +    + GL H+SE+S +H+   E +
Sbjct: 263  PWETAK----DKIHQGDALQGTVKRLVPFGAFVEL-LPGVEGLVHISEISHEHIGTPEEV 317

Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKS 1406
               G+ +KVK+L V+ + +R+SL +K+
Sbjct: 318  LSEGQVIKVKVLDVNFQDQRVSLSIKA 344



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 68/116 (58%), Gaps = 2/116 (1%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
            GK +  +++ ++   ++V ++ +      A + +   L+++  GD++ G ++R+  +G F
Sbjct: 146  GKPLDVKIVELDREKRKVILSHRAVLDEEADKKKAETLASIKEGDVIEGTVQRLTDFGAF 205

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + I   +  GL H+S+L+  HV+    +   G+KVKVK+L VD E  RISL +K++
Sbjct: 206  VDIGGVD--GLVHISQLAHYHVETPSEVVSEGDKVKVKVLSVDPESERISLSIKAT 259



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           T + +K G V++G V  +  FGA V   GGV  L  +  ++ + +  P +    G ++  
Sbjct: 182 TLASIKEGDVIEGTVQRLTDFGAFVDI-GGVDGLVHISQLAHYHVETPSEVVSEGDKVKV 240

Query: 418 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRF 471
           +VL V  +S+RI+++ K T           +  A D++       G + ++   G FV  
Sbjct: 241 KVLSVDPESERISLSIKATQP-------GPWETAKDKIHQGDALQGTVKRLVPFGAFVEL 293

Query: 472 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             GV+G    SE+  +    P  +   GQV+K +++      +R++LS 
Sbjct: 294 LPGVEGLVHISEISHEHIGTPEEVLSEGQVIKVKVLDVNFQDQRVSLSI 342



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 123/281 (43%), Gaps = 54/281 (19%)

Query: 1079 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKI 1136
            GK +   ++ +++EK+ + L  R   D  +DK         +T   I EGD++ G + ++
Sbjct: 146  GKPLDVKIVELDREKRKVILSHRAVLDEEADKK------KAETLASIKEGDVIEGTVQRL 199

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
                 G  V IG  + G VH ++L +  V  P     EG             VK KVL +
Sbjct: 200  TDF--GAFVDIGG-VDGLVHISQLAHYHVETPSEVVSEGDK-----------VKVKVLSV 245

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
                  +  + LS++++                  PG      + +     +QG VK + 
Sbjct: 246  DPE---SERISLSIKAT-----------------QPGPWETAKDKIHQGDALQGTVKRLV 285

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT- 1315
              G F+ L   ++  V +S +S  ++ +PE+    G+++  +VL V    +RV +++K  
Sbjct: 286  PFGAFVELLPGVEGLVHISEISHEHIGTPEEVLSEGQVIKVKVLDVNFQDQRVSLSIKAL 345

Query: 1316 -----SDSRTASQSEI------NNLSNLHVGDIVIGQIKRV 1345
                 S S++AS  +I      ++ S   +GD++  Q+K++
Sbjct: 346  ENEQPSQSKSASARDIAKATSDDDASGFSLGDMIGDQLKKL 386



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 136/342 (39%), Gaps = 25/342 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G VV GKV  V+   A+V     V  + P+  +S   + K       G ++  ++  ++ 
Sbjct: 18  GDVVNGKVTKVEEKHALVDVGYKVDGILPISELSSLHVEKVSDLLHEGDDITVKITKMED 77

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
             + ++ ++         L    +  +       I  + K G  V    GV+GF P S L
Sbjct: 78  DELVLSKREVDADKAWDDLEEKYKNKETFSVE--IADVVKGGLVVDL--GVRGFIPAS-L 132

Query: 485 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDDL--VKLGSL 538
                 E  S Y  G+ +  +I+      R++ LS       +  +   + L  +K G +
Sbjct: 133 VERHFVEDFSDYK-GKPLDVKIVELDREKRKVILSHRAVLDEEADKKKAETLASIKEGDV 191

Query: 539 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 597
           + G V  +T     V +   G   G +    LA +  H      V+  G +   ++L +D
Sbjct: 192 IEGTVQRLTDFGAFVDI---GGVDGLVHISQLAHY--HVETPSEVVSEGDKVKVKVLSVD 246

Query: 598 NESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 655
            ES  + LS     I + Q  P + +   IH    + G V  ++  G FV  L  + G  
Sbjct: 247 PESERISLS-----IKATQPGPWETAKDKIHQGDALQGTVKRLVPFGAFVELLPGVEGLV 301

Query: 656 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
             S+          +    GQ ++  +LDVN +  R++LS+K
Sbjct: 302 HISEISHEHIGTPEEVLSEGQVIKVKVLDVNFQDQRVSLSIK 343


>gi|444305869|ref|ZP_21141645.1| 30S ribosomal protein S1 [Arthrobacter sp. SJCon]
 gi|443481791|gb|ELT44710.1| 30S ribosomal protein S1 [Arthrobacter sp. SJCon]
          Length = 491

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 1010 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1059
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
            +    +P E+        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGEV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
           EL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVSVGDQVEALVLTKE 97

Query: 511 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 625
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 800
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 801 DLSLK 805
            LSLK
Sbjct: 362 SLSLK 366



 Score = 47.4 bits (111), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG+   VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVSVGDQVEALVLTKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|392944252|ref|ZP_10309894.1| ribosomal protein S1 [Frankia sp. QA3]
 gi|392287546|gb|EIV93570.1| ribosomal protein S1 [Frankia sp. QA3]
          Length = 493

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 190/422 (45%), Gaps = 67/422 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 24   VAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSI 83

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 84   KHDVDPHEV------VSVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 130

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 131  KLKDEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 181

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 182  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LA 217

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 218  QLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 276

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   +
Sbjct: 277  DVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRVDE-GI 330

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1419
             GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   N+A  L + 
Sbjct: 331  EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NEASGLAVD 387

Query: 1420 SE 1421
             E
Sbjct: 388  GE 389



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDKE 110

Query: 514 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKDEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 222

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 804 LK 805
           LK
Sbjct: 375 LK 376



 Score = 42.0 bits (97), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 149/352 (42%), Gaps = 31/352 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKED 108

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKD-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 220

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEAS 382


>gi|433630724|ref|YP_007264352.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070010]
 gi|433634681|ref|YP_007268308.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070017]
 gi|432162317|emb|CCK59693.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070010]
 gi|432166274|emb|CCK63767.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070017]
          Length = 481

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                + +L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  ++
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLK 805
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|15608768|ref|NP_216146.1| 30S ribosomal protein S1 RpsA [Mycobacterium tuberculosis H37Rv]
 gi|15841085|ref|NP_336122.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
 gi|148661425|ref|YP_001282948.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|148822837|ref|YP_001287591.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis F11]
 gi|167968417|ref|ZP_02550694.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|253799332|ref|YP_003032333.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 1435]
 gi|254231831|ref|ZP_04925158.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
 gi|254364480|ref|ZP_04980526.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
            Haarlem]
 gi|254550636|ref|ZP_05141083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis '98-R604
            INH-RIF-EM']
 gi|289443082|ref|ZP_06432826.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
 gi|289447238|ref|ZP_06436982.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
 gi|289569675|ref|ZP_06449902.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
 gi|289574297|ref|ZP_06454524.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
 gi|289745933|ref|ZP_06505311.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
 gi|289750175|ref|ZP_06509553.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
 gi|289753717|ref|ZP_06513095.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
 gi|289757732|ref|ZP_06517110.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
 gi|289761778|ref|ZP_06521156.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
 gi|294996579|ref|ZP_06802270.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 210]
 gi|297634183|ref|ZP_06951963.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 4207]
 gi|297731170|ref|ZP_06960288.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN R506]
 gi|298525126|ref|ZP_07012535.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis 94_M4241A]
 gi|306784360|ref|ZP_07422682.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
 gi|306788728|ref|ZP_07427050.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
 gi|306793065|ref|ZP_07431367.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
 gi|306797447|ref|ZP_07435749.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
 gi|307084210|ref|ZP_07493323.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
 gi|313658502|ref|ZP_07815382.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN V2475]
 gi|339631686|ref|YP_004723328.1| 30S ribosomal protein S1 [Mycobacterium africanum GM041182]
 gi|375296577|ref|YP_005100844.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207]
 gi|385991029|ref|YP_005909327.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5180]
 gi|385994631|ref|YP_005912929.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5079]
 gi|392386301|ref|YP_005307930.1| rpsA [Mycobacterium tuberculosis UT205]
 gi|392432788|ref|YP_006473832.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
 gi|397673484|ref|YP_006515019.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv]
 gi|422812616|ref|ZP_16861000.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A]
 gi|424803967|ref|ZP_18229398.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148]
 gi|424947350|ref|ZP_18363046.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis NCGM2209]
 gi|6226090|sp|O06147.1|RS1_MYCTU RecName: Full=30S ribosomal protein S1
 gi|13881299|gb|AAK45936.1| ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
 gi|124600890|gb|EAY59900.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
 gi|134149994|gb|EBA42039.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
            Haarlem]
 gi|148505577|gb|ABQ73386.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|148721364|gb|ABR05989.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis F11]
 gi|253320835|gb|ACT25438.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435]
 gi|289416001|gb|EFD13241.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
 gi|289420196|gb|EFD17397.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
 gi|289538728|gb|EFD43306.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
 gi|289543429|gb|EFD47077.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
 gi|289686461|gb|EFD53949.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
 gi|289690762|gb|EFD58191.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
 gi|289694304|gb|EFD61733.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
 gi|289709284|gb|EFD73300.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
 gi|289713296|gb|EFD77308.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
 gi|298494920|gb|EFI30214.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis 94_M4241A]
 gi|308330908|gb|EFP19759.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
 gi|308334743|gb|EFP23594.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
 gi|308338520|gb|EFP27371.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
 gi|308342191|gb|EFP31042.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
 gi|308366155|gb|EFP55006.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
 gi|323719890|gb|EGB29003.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A]
 gi|326903243|gb|EGE50176.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148]
 gi|328459082|gb|AEB04505.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207]
 gi|339294585|gb|AEJ46696.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5079]
 gi|339298222|gb|AEJ50332.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5180]
 gi|339331042|emb|CCC26714.1| putative ribosomal protein S1 RPSA [Mycobacterium africanum GM041182]
 gi|358231865|dbj|GAA45357.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis NCGM2209]
 gi|378544852|emb|CCE37127.1| rpsA [Mycobacterium tuberculosis UT205]
 gi|379027853|dbj|BAL65586.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis str. Erdman =
            ATCC 35801]
 gi|392054197|gb|AFM49755.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
 gi|395138389|gb|AFN49548.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv]
 gi|440581096|emb|CCG11499.1| putative RIBOSOMAL protein S1 RPSA [Mycobacterium tuberculosis
            7199-99]
 gi|444895138|emb|CCP44394.1| 30S ribosomal protein S1 RpsA [Mycobacterium tuberculosis H37Rv]
          Length = 481

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                + +L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  ++
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLK 805
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|404421594|ref|ZP_11003308.1| 30S ribosomal protein S1 [Mycobacterium fortuitum subsp. fortuitum
            DSM 46621]
 gi|403658822|gb|EJZ13520.1| 30S ribosomal protein S1 [Mycobacterium fortuitum subsp. fortuitum
            DSM 46621]
          Length = 479

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 151/380 (39%), Gaps = 46/380 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRR 357

Query: 800 VDLSLKTVFIDRFREANSNR 819
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407


>gi|339444205|ref|YP_004710209.1| hypothetical protein EGYY_05950 [Eggerthella sp. YY7918]
 gi|338903957|dbj|BAK43808.1| hypothetical protein EGYY_05950 [Eggerthella sp. YY7918]
          Length = 424

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 104/188 (55%), Gaps = 13/188 (6%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L+  M ++G V ++   G F+ L   +D  V +S LS  +V  P +   +G  V   VL 
Sbjct: 204  LTKGMRLKGTVSSIVDFGAFVDLG-GIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLD 262

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
            V+   +R+ + LK    +T     I  + +  VG IV G++ ++  +G FI +   ++ G
Sbjct: 263  VDLQRERISLGLK----QTTEDPWIKLVESYPVGSIVDGKVTKIVPFGAFIEL-GQSIEG 317

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1421
            L H+SE++  H+D    + +AG++VKVK+++++ E+RRISL MK++         ++  E
Sbjct: 318  LVHISEMAMKHIDTPAQVVKAGDEVKVKVMEINPERRRISLSMKAAAS-------ELGFE 370

Query: 1422 EESDEAIE 1429
             E DE+I+
Sbjct: 371  IEVDESIQ 378



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +  GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 202 SKLTKGMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEV 260

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V  + +RI++  K+T     + ++ SY   +   I  G +TKI   G F+     ++G
Sbjct: 261 LDVDLQRERISLGLKQTTEDPWIKLVESYPVGS---IVDGKVTKIVPFGAFIELGQSIEG 317

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SE+ +     P+ +   G  VK ++M   P  RRI+LS 
Sbjct: 318 LVHISEMAMKHIDTPAQVVKAGDEVKVKVMEINPERRRISLSM 360



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 74/366 (20%), Positives = 149/366 (40%), Gaps = 52/366 (14%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G + KIE     V      +G  P  EL +    +PS + ++G  ++  ++      
Sbjct: 36  LVDGTVVKIEHDEVLVDIGFKSEGVIPSRELSIRKDADPSDIVNLGDKIEALVLQKEDKD 95

Query: 514 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
            R+ LS     +     RV E    K G +V+G V  V    +++ +  +G+   ++   
Sbjct: 96  GRLILSKKRAEYERAWIRVEEK--FKAGEVVTGEVIEVVKGGLILDIGLRGFLPASLVDL 153

Query: 569 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 627
                L+    + + I+      +++ +D   +N++LS +  L    +   ++  S +  
Sbjct: 154 RRVKDLD--MYLNTEIEA-----RVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLTK 206

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
              + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+ 
Sbjct: 207 GMRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDL 265

Query: 688 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 747
           +  RI+L LKQ+                                +K VE + +GS+++GK
Sbjct: 266 QRERISLGLKQTTEDPW---------------------------IKLVESYPVGSIVDGK 298

Query: 748 VHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERLV 800
           V +   FG  +   +   + G +   ++A          V++G  ++  ++++    R +
Sbjct: 299 VTKIVPFGAFIELGQS--IEGLVHISEMAMKHIDTPAQVVKAGDEVKVKVMEINPERRRI 356

Query: 801 DLSLKT 806
            LS+K 
Sbjct: 357 SLSMKA 362


>gi|111221225|ref|YP_712019.1| 30S ribosomal protein S1 [Frankia alni ACN14a]
 gi|111148757|emb|CAJ60433.1| 30S ribosomal protein S1 [Frankia alni ACN14a]
          Length = 518

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 190/422 (45%), Gaps = 67/422 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 49   VAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSI 108

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 109  KHDVDPHEV------VSVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 155

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 156  KLKDEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 206

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 207  --------LEAKIIELDKN---RNNVVLSRRAWLEQTQSEVRSEF-------------LA 242

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 243  QLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 301

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   +
Sbjct: 302  DVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRVDE-GI 355

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1419
             GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   N+A  L + 
Sbjct: 356  EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NEASGLAVD 412

Query: 1420 SE 1421
             E
Sbjct: 413  GE 414



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 76  IVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDKE 135

Query: 514 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 136 GRLILSKKRAQYERAWGTIEKLKDEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 190

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 191 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 247

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 248 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 306

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 307 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 339

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 340 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 399

Query: 804 LK 805
           LK
Sbjct: 400 LK 401



 Score = 40.4 bits (93), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 149/352 (42%), Gaps = 31/352 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 74  GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKED 133

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 134 KEGRLILSKKRAQYERAWGTIEKLKD-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 189

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 190 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 245

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 246 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 299

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 300 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 355

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S
Sbjct: 356 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEAS 407


>gi|31792816|ref|NP_855309.1| 30S ribosomal protein S1 [Mycobacterium bovis AF2122/97]
 gi|121637537|ref|YP_977760.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Pasteur
            1173P2]
 gi|224990012|ref|YP_002644699.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
 gi|378771371|ref|YP_005171104.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Mexico]
 gi|449063688|ref|YP_007430771.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Korea 1168P]
 gi|31618406|emb|CAD96324.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium bovis AF2122/97]
 gi|121493184|emb|CAL71655.1| Probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|224773125|dbj|BAH25931.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341601555|emb|CCC64228.1| probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str.
            Moreau RDJ]
 gi|356593692|gb|AET18921.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Mexico]
 gi|449032196|gb|AGE67623.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Korea 1168P]
          Length = 481

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                + +L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.1 bits (113), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 47.4 bits (111), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 146/368 (39%), Gaps = 50/368 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  ++
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLK 805
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|269127063|ref|YP_003300433.1| RNA binding S1 domain-containing protein [Thermomonospora curvata DSM
            43183]
 gi|268312021|gb|ACY98395.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183]
          Length = 487

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 186/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSAEEFLAAIDETIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPHEV------VKVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+    T S    T ++T         
Sbjct: 172  --------LEAKIIELDKN---RNNVVLSRRAWLE---QTQSEVRQTFLNT--------- 208

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 209  -LQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 266

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ +E   +
Sbjct: 267  DVDMERERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGRVTKLVPFGAFVRVEE-GI 320

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HV+  E + + G+++ VKI+ +D ++RRISL +K +
Sbjct: 321  EGLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLDRRRISLSLKQA 368



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 153/351 (43%), Gaps = 29/351 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  KVG  +   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDHVEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D E   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMERERVSLSLKATQEDPWQQF---ARTHQIGQVVPGRVTKLVPFGAFVRVEEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           G    S+  +       +   VG  +   I+D++ +  RI+LSLKQ+  ++
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLDRRRISLSLKQANETA 372


>gi|385998404|ref|YP_005916702.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CTRI-2]
 gi|344219450|gb|AEN00081.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CTRI-2]
          Length = 481

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                + +L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  ++
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLK 805
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|205373820|ref|ZP_03226622.1| 30S ribosomal protein S1 [Bacillus coahuilensis m4-4]
          Length = 299

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 99/167 (59%), Gaps = 6/167 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +E L  + +++G V+ +T  G F+ +   +D  V +S LS  +VE P      G+ V  +
Sbjct: 103  LESLKQDQVLEGTVQRITDFGAFVDIG-GVDGLVHISQLSHEHVEKPTDVVAEGQAVKVK 161

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VLSV+  ++R+ +++K  ++     SEI N ++   G ++ G++KR+ SYG FI +    
Sbjct: 162  VLSVDRDNERISLSIK--ETLPGPWSEIANRASK--GSVLEGEVKRIVSYGAFIEL-FPG 216

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + GL H+S+LS  HV     + + G+ VKVK+L V+++ +R+SL +K
Sbjct: 217  VEGLVHISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSIK 263



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            L +L    ++ G ++R+  +G F+ I   +  GL H+S+LS +HV+    +   G+ VKV
Sbjct: 103  LESLKQDQVLEGTVQRITDFGAFVDIGGVD--GLVHISQLSHEHVEKPTDVVAEGQAVKV 160

Query: 1389 KILKVDKEKRRISLGMKSS 1407
            K+L VD++  RISL +K +
Sbjct: 161  KVLSVDRDNERISLSIKET 179



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K   V++G V  +  FGA V   GGV  L  +  +S   + KP      G  +  +VL 
Sbjct: 106 LKQDQVLEGTVQRITDFGAFVDI-GGVDGLVHISQLSHEHVEKPTDVVAEGQAVKVKVLS 164

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V   ++RI+++ K+TL      I +  ++ +   +  G + +I  +G F+  + GV+G  
Sbjct: 165 VDRDNERISLSIKETLPGPWSEIANRASKGS---VLEGEVKRIVSYGAFIELFPGVEGLV 221

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             S+L       P  +   GQ VK +++      +R++LS 
Sbjct: 222 HISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSI 262



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 36/206 (17%)

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
            G  V IG  + G VH ++L +  V  P         D ++   EGQ VK KVL + R   
Sbjct: 123  GAFVDIGG-VDGLVHISQLSHEHVEKPT--------DVVA---EGQAVKVKVLSVDRD-- 168

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
                + LS++ +L                 PG   E     S   +++G VK + S G F
Sbjct: 169  -NERISLSIKETL-----------------PGPWSEIANRASKGSVLEGEVKRIVSYGAF 210

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            I L   ++  V +S LS  +V +P +    G+ V  +VL V    +R+ +++K  + +  
Sbjct: 211  IELFPGVEGLVHISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSIKELEEKPV 270

Query: 1322 SQSEINNL----SNLHVGDIVIGQIK 1343
             + E   L    S   +G+++  ++K
Sbjct: 271  QEVEKYELPEENSGFQLGEMIGDKLK 296



 Score = 43.9 bits (102), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 3/107 (2%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 651
           ++L +D ++  + LS K +L     ++ + AS     SV+ G V  I+  G F+     +
Sbjct: 161 KVLSVDRDNERISLSIKETLPGPWSEIANRAS---KGSVLEGEVKRIVSYGAFIELFPGV 217

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            G    S+          +    GQSV+  +LDVN +  R++LS+K+
Sbjct: 218 EGLVHISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSIKE 264


>gi|118617252|ref|YP_905584.1| 30S ribosomal protein S1 [Mycobacterium ulcerans Agy99]
 gi|183982447|ref|YP_001850738.1| 30S ribosomal protein S1 [Mycobacterium marinum M]
 gi|443491265|ref|YP_007369412.1| 30S ribosomal protein S1 [Mycobacterium liflandii 128FXT]
 gi|118569362|gb|ABL04113.1| ribosomal protein S1 RpsA [Mycobacterium ulcerans Agy99]
 gi|183175773|gb|ACC40883.1| ribosomal protein S1 RpsA [Mycobacterium marinum M]
 gi|442583762|gb|AGC62905.1| 30S ribosomal protein S1 [Mycobacterium liflandii 128FXT]
          Length = 481

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDQTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VTVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVTVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDDQGNYIFPEGFDPETNEWMEGF 407



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 147/377 (38%), Gaps = 53/377 (14%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVTVGDEVEALVLTKEDKE 97

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 TIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 749 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 801
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 802 LSLKTV---FIDRFREA 815
           LSLK     + D F  A
Sbjct: 360 LSLKQANEDYTDEFDPA 376


>gi|41407423|ref|NP_960259.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            K-10]
 gi|118464486|ref|YP_882336.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
 gi|254775602|ref|ZP_05217118.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. avium ATCC
            25291]
 gi|417750612|ref|ZP_12398967.1| ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            S397]
 gi|41395775|gb|AAS03642.1| RpsA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165773|gb|ABK66670.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
 gi|336457775|gb|EGO36769.1| ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            S397]
          Length = 480

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 144/368 (39%), Gaps = 50/368 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLK 805
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|257056579|ref|YP_003134411.1| 30S ribosomal protein S1 [Saccharomonospora viridis DSM 43017]
 gi|256586451|gb|ACU97584.1| SSU ribosomal protein S1P [Saccharomonospora viridis DSM 43017]
          Length = 495

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 189/414 (45%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S + + + V++IG++  F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 11   SSQANQVAVNDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 70

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL   KE K  RL+L   +        + 
Sbjct: 71   SRELSIKHDVDPAEV------VAVGDEVEALVL--QKEDKEGRLILSKKR-----AQYER 117

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 118  AWGTIEELKEKDEPVRGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE- 174

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 175  --------------LEAKIIELDKN---RNNVVLSRRAYLEQTQSEVRSEF--------- 208

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L+   + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ 
Sbjct: 209  ----LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE 263

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 264  VTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 318

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  E + + G +V VK++ +D E+RRISL +K +
Sbjct: 319  VEE-GIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQA 371



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 147/366 (40%), Gaps = 46/366 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 40  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQK 99

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 100 EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGF----LP 155

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 156 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 211

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 212 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 270

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 271 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 303

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V+ G+ +   ++D+    R 
Sbjct: 304 PGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRR 363

Query: 800 VDLSLK 805
           + LSLK
Sbjct: 364 ISLSLK 369



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 42  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKED 101

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 102 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 157

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 158 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 213

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 214 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 267

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 268 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 323

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 708
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    S DA F
Sbjct: 324 EGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQANEGYSPDAEF 381


>gi|225619757|ref|YP_002721014.1| 30S ribosomal protein S1 [Brachyspira hyodysenteriae WA1]
 gi|225214576|gb|ACN83310.1| 30S ribosomal protein S1 [Brachyspira hyodysenteriae WA1]
          Length = 554

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 159/360 (44%), Gaps = 17/360 (4%)

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
           +L+ +   G+    +++K   ++ GKV  ++ FGA ++   G      +P+MS  ++V P
Sbjct: 173 LLEETQNAGIETFLNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVVNP 232

Query: 406 GKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
                 G E +F+VL + K  R      K L +             D  I +G +T ++K
Sbjct: 233 KSVISKGEERMFKVLHIDKENRKVDLGLKQLDEDPWGKFVEQYHIGD--IINGEVTNVKK 290

Query: 465 HGCFVRFYNGVQGFAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
            G FV+  +G++G    S+L  +     PS     G  ++C+I+    A R++ L     
Sbjct: 291 FGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQV 350

Query: 523 --KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 580
              P    E D   + S V   V  +  N   V+ +  G  +G        D   +   M
Sbjct: 351 KENPWDTVEKDF-PVKSAVKCKVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVNM 406

Query: 581 KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNI 638
           K  +K G E + +++ +D +   + LS K++  +S  +L   A   HP  S+V G V  I
Sbjct: 407 KDYVKEGEEVNMVIMSIDRDKQRIKLSYKHTK-DSPWRLFEKA---HPQGSIVDGTVKAI 462

Query: 639 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
           +++G  V     L G+   S+    + + L +   VG++    + +VN    RI+LS ++
Sbjct: 463 VDSGAIVSLEDDLEGYMHVSQVEIPKGSTLEEVVKVGETYPFVVREVNQSKRRISLSRRE 522



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 93/168 (55%), Gaps = 6/168 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            + +L  N I+ G VKN+   G FI ++   D  + + N+S   V +P+     G+    +
Sbjct: 186  LNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVVNPKSVISKGEERMFK 245

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VL ++  +++V++ LK  D     +     +   H+GDI+ G++  V+ +G F+ + +  
Sbjct: 246  VLHIDKENRKVDLGLKQLDEDPWGKF----VEQYHIGDIINGEVTNVKKFGAFVKVAD-G 300

Query: 1359 LVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  IEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLK 348



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 49/300 (16%)

Query: 1116 NDNMQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            N  ++TF++   E DI+ G++  I     G  ++I P   G +    +    V +P S  
Sbjct: 179  NAGIETFLNNLKENDIINGKVKNIEKF--GAFIEITPGFDGFLAIPNMSWDKVVNPKSVI 236

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
             +G+        E  F   KVL I +  R    V+L L+                D D  
Sbjct: 237  SKGE--------ERMF---KVLHIDKENR---KVDLGLKQ--------------LDEDPW 268

Query: 1233 GKHLEK--IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEF 1289
            GK +E+  I D     I+ G V NV   G F+ ++  ++  V +S+LS + +V +P    
Sbjct: 269  GKFVEQYHIGD-----IINGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFV 323

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESY 1348
              G  +  ++L +    +++ + LK          E     +  V   V  ++KR+ +++
Sbjct: 324  KKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVE----KDFPVKSAVKCKVKRIIKNF 379

Query: 1349 GLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             +F  + N  L G+C +S+    +++ N++   + GE+V + I+ +D++K+RI L  K +
Sbjct: 380  AVF-ELPN-GLEGICDISDFDWRNNIVNMKDYVKEGEEVNMVIMSIDRDKQRIKLSYKHT 437



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 110/541 (20%), Positives = 199/541 (36%), Gaps = 82/541 (15%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G + + +    F+ F +  +G   RSE   +P         +G+ ++  I+S     
Sbjct: 31  IVKGKVVQFDDTDVFIDFDSKSEGKIKRSEFDKEP--------TIGEEIEA-IVSGEDDK 81

Query: 514 RRINLSFMMKPTRVSE---DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
             + LS      R S+   D+ VK  + ++GVV  V      V ++     +   P   +
Sbjct: 82  GYVILSKSEIDKRKSQELIDNAVKNNTAITGVVKEVIKGGFKVSIMG---HQAFCPFSQI 138

Query: 571 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 628
              L         I   YEF    V+     ++++S +  L+   Q   + +  +++  N
Sbjct: 139 --DLARGIKEADYIGKEYEF---RVIKKNGRDVVVSRRV-LLEETQNAGIETFLNNLKEN 192

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            +++G V NI + G F+       GF         +  +       G+     +L ++ E
Sbjct: 193 DIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVVNPKSVISKGEERMFKVLHIDKE 252

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             ++ L LKQ               L E+               K+VE + IG +I G+V
Sbjct: 253 NRKVDLGLKQ---------------LDEDPWG------------KFVEQYHIGDIINGEV 285

Query: 749 HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 802
                FG  V   +      H     + +H       V+ G+ ++  ILD+  AER + L
Sbjct: 286 TNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTL 345

Query: 803 SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 862
            LK V               K+       KD  V   V   V+ + +N+ V  LP     
Sbjct: 346 GLKQV---------------KENPWDTVEKDFPVKSAVKCKVKRIIKNFAVFELPNGLEG 390

Query: 863 IGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 921
           I   S  D+       K ++  G+ V   +M++       +L       S   T  S   
Sbjct: 391 ICDISDFDWRNNIVNMKDYVKEGEEVNMVIMSIDRDKQRIKL-------SYKHTKDSPWR 443

Query: 922 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 981
             + ++  GS+V   +  I      +       G +H+++V   K + +E +    K+G+
Sbjct: 444 LFEKAHPQGSIVDGTVKAIVDSGAIVSLEDDLEGYMHVSQVEIPKGSTLEEV---VKVGE 500

Query: 982 T 982
           T
Sbjct: 501 T 501



 Score = 47.4 bits (111), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 142/353 (40%), Gaps = 51/353 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +VKGKV+  D     + F    +        SEF+     K+  +G E+   V G   
Sbjct: 29  GKIVKGKVVQFDDTDVFIDFDSKSEGKI---KRSEFD-----KEPTIGEEIEAIVSGEDD 80

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
           K   +  K  + K K   L   A   +  IT G + ++ K G  V    G Q F P S++
Sbjct: 81  KGYVILSKSEIDKRKSQELIDNAVKNNTAIT-GVVKEVIKGGFKVSIM-GHQAFCPFSQI 138

Query: 485 GLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 540
            L  G + +   ++G+  + R++      +  SRR+ L         +  + +K   +++
Sbjct: 139 DLARGIKEAD--YIGKEYEFRVIKKNGRDVVVSRRVLLEETQNAGIETFLNNLKENDIIN 196

Query: 541 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLVLDNE 599
           G V  +      +  I  G+  G +   +++   +     KSVI  G E   ++L +D E
Sbjct: 197 GKVKNIEKFGAFIE-ITPGFD-GFLAIPNMS--WDKVVNPKSVISKGEERMFKVLHIDKE 252

Query: 600 SSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
           +  + L  K        QL  D         H   +++G V N+ + G FV+    + G 
Sbjct: 253 NRKVDLGLK--------QLDEDPWGKFVEQYHIGDIINGEVTNVKKFGAFVKVADGIEGL 304

Query: 655 APRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 698
              S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 305 VHVS--------DLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQ 349



 Score = 43.9 bits (102), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 140/332 (42%), Gaps = 68/332 (20%)

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL I+KE + + L L+   +    K V+          H GDI+ G ++ +     G  V
Sbjct: 246  VLHIDKENRKVDLGLKQLDEDPWGKFVEQ--------YHIGDIINGEVTNVKKF--GAFV 295

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
            ++   + G VH ++L           ++    +P     +G F++CK+L+++   R    
Sbjct: 296  KVADGIEGLVHVSDL----------SWNSHVNNPSDFVKKGAFLECKILDMNAAER---- 341

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
             +L+L     G+            + P   +EK  D      V+  VK +        L 
Sbjct: 342  -KLTL-----GLKQVK--------ENPWDTVEK--DFPVKSAVKCKVKRIIKNFAVFELP 385

Query: 1266 RKLDAKVLLS---------NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-T 1315
              L+    +S         N+ D YV+        G+ V   ++S++   +R++++ K T
Sbjct: 386  NGLEGICDISDFDWRNNIVNMKD-YVKE-------GEEVNMVIMSIDRDKQRIKLSYKHT 437

Query: 1316 SDS--RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
             DS  R   ++          G IV G +K +   G  +++E+ +L G  HVS++     
Sbjct: 438  KDSPWRLFEKAHPQ-------GSIVDGTVKAIVDSGAIVSLED-DLEGYMHVSQVEIPKG 489

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              +E + + GE     + +V++ KRRISL  +
Sbjct: 490  STLEEVVKVGETYPFVVREVNQSKRRISLSRR 521


>gi|433608430|ref|YP_007040799.1| 30S ribosomal protein S1 [Saccharothrix espanaensis DSM 44229]
 gi|407886283|emb|CCH33926.1| 30S ribosomal protein S1 [Saccharothrix espanaensis DSM 44229]
          Length = 498

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 186/411 (45%), Gaps = 64/411 (15%)

Query: 1008 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1057
            P  + +++IG++  F    D +I     G  V G + KVD +  LL I       + ++ 
Sbjct: 14   PKQVAINDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRE 73

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +P+E+        +G  V   VL   KE K  RL+L   +        + +  
Sbjct: 74   LSIKHDVDPNEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWG 120

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 121  TIEALKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 174

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   S+             
Sbjct: 175  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF------------ 208

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 209  -LNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 266

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ ++ 
Sbjct: 267  EVLDVDMERERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVDE 321

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+E HV+  E + + G+ V VK++ +D ++RRISL +K +
Sbjct: 322  -GIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQA 371



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 167/392 (42%), Gaps = 36/392 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 42  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKED 101

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 102 KEGRLILSKKRAQYERAWGTIEALKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 157

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 158 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 213

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 214 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 267

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D E   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 268 VLDVDMERERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 323

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASFMQ 710
            G    S+  +       +   VG  V   ++D++ +  RI+LSLKQ+    T D+ F  
Sbjct: 324 EGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQANEGFTVDSEFDP 383

Query: 711 EHFLL----EEKIAMLQSSKHNGSELKWVEGF 738
             + +    +++   +     +    +W EGF
Sbjct: 384 TQYGMAAEYDDQGNYIYPEGFDPETQEWQEGF 415



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 145/365 (39%), Gaps = 46/365 (12%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++   
Sbjct: 41  DGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKE 100

Query: 511 PASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P 
Sbjct: 101 DKEGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP- 155

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 625
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +
Sbjct: 156 ---ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQL 212

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV
Sbjct: 213 QKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDV 271

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
           + E  R++LSLK +        F + H                           IG ++ 
Sbjct: 272 DMERERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVP 304

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 800
           GKV +   FG  V  +E  +    I+     H ++    V+ G  +   ++D+    R +
Sbjct: 305 GKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRI 364

Query: 801 DLSLK 805
            LSLK
Sbjct: 365 SLSLK 369


>gi|336441302|gb|AEI54876.1| 30S ribosomal protein S1 [Mycobacterium franklinii]
          Length = 481

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ R      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 149/380 (39%), Gaps = 46/380 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V  G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRR 357

Query: 800 VDLSLKTVFIDRFREANSNR 819
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377


>gi|169629382|ref|YP_001703031.1| 30S ribosomal protein S1 [Mycobacterium abscessus ATCC 19977]
 gi|420909888|ref|ZP_15373201.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-R]
 gi|420916343|ref|ZP_15379647.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-S]
 gi|420920887|ref|ZP_15384184.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-S]
 gi|420927169|ref|ZP_15390451.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-1108]
 gi|420966669|ref|ZP_15429874.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0810-R]
 gi|420977508|ref|ZP_15440687.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0212]
 gi|420982889|ref|ZP_15446058.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-R]
 gi|421007295|ref|ZP_15470407.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0119-R]
 gi|421012807|ref|ZP_15475894.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-R]
 gi|421017716|ref|ZP_15480776.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-S]
 gi|421023271|ref|ZP_15486318.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0731]
 gi|421029448|ref|ZP_15492482.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-R]
 gi|421033301|ref|ZP_15496323.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-S]
 gi|169241349|emb|CAM62377.1| 30S ribosomal protein S1 [Mycobacterium abscessus]
 gi|336441300|gb|AEI54875.1| 30S ribosomal protein S1 [Mycobacterium abscessus]
 gi|392120483|gb|EIU46249.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-S]
 gi|392122262|gb|EIU48027.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-R]
 gi|392130723|gb|EIU56469.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-S]
 gi|392134402|gb|EIU60143.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-1108]
 gi|392166708|gb|EIU92391.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0212]
 gi|392172369|gb|EIU98040.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-R]
 gi|392200224|gb|EIV25831.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0119-R]
 gi|392205347|gb|EIV30931.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-R]
 gi|392210502|gb|EIV36069.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-S]
 gi|392214240|gb|EIV39792.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0731]
 gi|392228953|gb|EIV54465.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-R]
 gi|392229842|gb|EIV55352.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-S]
 gi|392252110|gb|EIV77579.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0810-R]
          Length = 481

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ R      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 148/376 (39%), Gaps = 46/376 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  EE  +    I+     H ++    V  G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLS 361

Query: 804 LKTVFIDRFREANSNR 819
           LK    D   E + ++
Sbjct: 362 LKQANEDYTEEFDPSK 377


>gi|336178098|ref|YP_004583473.1| RNA binding S1 domain-containing protein [Frankia symbiont of Datisca
            glomerata]
 gi|334859078|gb|AEH09552.1| RNA binding S1 domain protein [Frankia symbiont of Datisca glomerata]
          Length = 484

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 188/418 (44%), Gaps = 67/418 (16%)

Query: 1010 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1059
             + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   
Sbjct: 14   QVAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELS 73

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
            +    +P E+        +G  V   VL   KE K  RL+L   +        + +   +
Sbjct: 74   IKHDVDPHEV------VTVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTI 120

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +      
Sbjct: 121  EKLKEEDGVVNGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------ 172

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                     ++ K++E+ +      +V LS R+ L+   S   S+              +
Sbjct: 173  ---------LEAKIIELDKN---RNNVVLSRRAWLEQTQSEVRSEF-------------L 207

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 208  AQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 266

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 267  LDVDLERERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRV-DEG 320

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
            + GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   ND+  L
Sbjct: 321  IEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NDSSAL 375



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 42  IVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKEDKE 101

Query: 514 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 102 GRLILSKKRAQYERAWGTIEKLKEEDGVVNGTVIEVVKGGLILDIGLRGFLPASL----- 156

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 157 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 213

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ E
Sbjct: 214 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLE 272

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 273 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 305

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 306 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 365

Query: 804 LK 805
           LK
Sbjct: 366 LK 367



 Score = 47.4 bits (111), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 147/353 (41%), Gaps = 31/353 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 40  GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKED 99

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E     + +G + ++ K G  +    G++GF P S
Sbjct: 100 KEGRLILSKKRAQYERAWGTIEKLKEEDG--VVNGTVIEVVKGGLILDI--GLRGFLPAS 155

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 156 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 211

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 212 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 265

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D E   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 266 VLDVDLERERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 321

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  SS 
Sbjct: 322 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANDSSA 374


>gi|336441308|gb|AEI54879.1| 30S ribosomal protein S1 [Mycobacterium immunogenum]
          Length = 481

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ R      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 149/380 (39%), Gaps = 46/380 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V  G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRR 357

Query: 800 VDLSLKTVFIDRFREANSNR 819
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377


>gi|336441306|gb|AEI54878.1| 30S ribosomal protein S1 [Mycobacterium chelonae]
          Length = 481

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ R      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 150/380 (39%), Gaps = 46/380 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V  G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRR 357

Query: 800 VDLSLKTVFIDRFREANSNR 819
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377


>gi|365870180|ref|ZP_09409724.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 = JCM
            15300]
 gi|397679450|ref|YP_006520985.1| 30S ribosomal protein S1 [Mycobacterium massiliense str. GO 06]
 gi|414580037|ref|ZP_11437178.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1215]
 gi|418248590|ref|ZP_12874976.1| 30S ribosomal protein S1 [Mycobacterium abscessus 47J26]
 gi|418420385|ref|ZP_12993566.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii BD]
 gi|419712654|ref|ZP_14240111.1| 30S ribosomal protein S1 [Mycobacterium abscessus M93]
 gi|419715386|ref|ZP_14242790.1| 30S ribosomal protein S1 [Mycobacterium abscessus M94]
 gi|420861808|ref|ZP_15325204.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0303]
 gi|420868499|ref|ZP_15331881.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RA]
 gi|420872943|ref|ZP_15336320.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RB]
 gi|420877185|ref|ZP_15340554.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0304]
 gi|420883048|ref|ZP_15346411.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0421]
 gi|420889059|ref|ZP_15352410.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0422]
 gi|420893374|ref|ZP_15356716.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0708]
 gi|420898783|ref|ZP_15362118.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0817]
 gi|420904588|ref|ZP_15367907.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1212]
 gi|420931348|ref|ZP_15394623.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-151-0930]
 gi|420937500|ref|ZP_15400769.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-152-0914]
 gi|420941605|ref|ZP_15404863.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-153-0915]
 gi|420948277|ref|ZP_15411527.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-154-0310]
 gi|420951858|ref|ZP_15415102.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0626]
 gi|420956028|ref|ZP_15419265.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0107]
 gi|420961691|ref|ZP_15424917.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-1231]
 gi|420971496|ref|ZP_15434691.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0921]
 gi|420989221|ref|ZP_15452377.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0206]
 gi|420991997|ref|ZP_15455145.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0307]
 gi|420997834|ref|ZP_15460972.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-R]
 gi|421002273|ref|ZP_15465399.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-S]
 gi|421037697|ref|ZP_15500709.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-R]
 gi|421043297|ref|ZP_15506298.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-S]
 gi|421049238|ref|ZP_15512233.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 = JCM
            15300]
 gi|183427450|gb|ACC62511.1| S1 ribosomal protein [Mycobacterium abscessus]
 gi|336441304|gb|AEI54877.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii]
 gi|336441310|gb|AEI54880.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii]
 gi|353453083|gb|EHC01477.1| 30S ribosomal protein S1 [Mycobacterium abscessus 47J26]
 gi|363997369|gb|EHM18581.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 = JCM
            15300]
 gi|364000222|gb|EHM21423.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii BD]
 gi|382937435|gb|EIC61789.1| 30S ribosomal protein S1 [Mycobacterium abscessus M93]
 gi|382943954|gb|EIC68264.1| 30S ribosomal protein S1 [Mycobacterium abscessus M94]
 gi|392067969|gb|EIT93816.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RA]
 gi|392071971|gb|EIT97812.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RB]
 gi|392076969|gb|EIU02800.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0303]
 gi|392088676|gb|EIU14496.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0304]
 gi|392090018|gb|EIU15834.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0421]
 gi|392090152|gb|EIU15966.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0422]
 gi|392101964|gb|EIU27751.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0708]
 gi|392106492|gb|EIU32277.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0817]
 gi|392107053|gb|EIU32836.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1212]
 gi|392119861|gb|EIU45628.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1215]
 gi|392136107|gb|EIU61844.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-151-0930]
 gi|392143015|gb|EIU68740.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-152-0914]
 gi|392151087|gb|EIU76799.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-153-0915]
 gi|392155307|gb|EIU81013.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-154-0310]
 gi|392157170|gb|EIU82867.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0626]
 gi|392168207|gb|EIU93886.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0921]
 gi|392183500|gb|EIV09151.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0206]
 gi|392186611|gb|EIV12257.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0307]
 gi|392187546|gb|EIV13187.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-R]
 gi|392197486|gb|EIV23101.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-S]
 gi|392229378|gb|EIV54889.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-R]
 gi|392237149|gb|EIV62643.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-S]
 gi|392241151|gb|EIV66641.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898]
 gi|392251725|gb|EIV77197.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-1231]
 gi|392252927|gb|EIV78395.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0107]
 gi|395457715|gb|AFN63378.1| 30S ribosomal protein S1 [Mycobacterium massiliense str. GO 06]
          Length = 481

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ R      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 149/380 (39%), Gaps = 46/380 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V  G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRR 357

Query: 800 VDLSLKTVFIDRFREANSNR 819
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377


>gi|166154319|ref|YP_001654437.1| 30S ribosomal protein S1 [Chlamydia trachomatis 434/Bu]
 gi|166155194|ref|YP_001653449.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|255348460|ref|ZP_05380467.1| 30S ribosomal protein S1 [Chlamydia trachomatis 70]
 gi|255503002|ref|ZP_05381392.1| 30S ribosomal protein S1 [Chlamydia trachomatis 70s]
 gi|301335570|ref|ZP_07223814.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2tet1]
 gi|339625750|ref|YP_004717229.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2c]
 gi|165930307|emb|CAP03793.1| SSU ribosomal protein S1P [Chlamydia trachomatis 434/Bu]
 gi|165931182|emb|CAP06747.1| SSU ribosomal protein S1P [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|339460979|gb|AEJ77482.1| ribosomal protein S1 [Chlamydia trachomatis L2c]
 gi|440525903|emb|CCP51387.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/8200/07]
 gi|440535727|emb|CCP61240.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/795]
 gi|440536617|emb|CCP62131.1| 30S ribosomal protein S1 [Chlamydia trachomatis L1/440/LN]
 gi|440537509|emb|CCP63023.1| 30S ribosomal protein S1 [Chlamydia trachomatis L1/1322/p2]
 gi|440538399|emb|CCP63913.1| 30S ribosomal protein S1 [Chlamydia trachomatis L1/115]
 gi|440539288|emb|CCP64802.1| 30S ribosomal protein S1 [Chlamydia trachomatis L1/224]
 gi|440540178|emb|CCP65692.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2/25667R]
 gi|440541068|emb|CCP66582.1| 30S ribosomal protein S1 [Chlamydia trachomatis L3/404/LN]
 gi|440541956|emb|CCP67470.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/UCH-2]
 gi|440542846|emb|CCP68360.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Canada2]
 gi|440543738|emb|CCP69252.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/LST]
 gi|440544628|emb|CCP70142.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams1]
 gi|440545518|emb|CCP71032.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/CV204]
 gi|440913780|emb|CCP90197.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams2]
 gi|440914670|emb|CCP91087.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams3]
 gi|440915562|emb|CCP91979.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Canada1]
 gi|440916455|emb|CCP92872.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams4]
 gi|440917345|emb|CCP93762.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams5]
          Length = 569

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K        + E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIE----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1425
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLAHGGDAGHDAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 385
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 386 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 503 KCRIMSSIPASRRINLSF 520
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471


>gi|254820984|ref|ZP_05225985.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
          Length = 479

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 148/381 (38%), Gaps = 53/381 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLKTV---FIDRFREA 815
           R + LSLK     + D F  A
Sbjct: 356 RRISLSLKQANEDYTDEFDPA 376


>gi|374339665|ref|YP_005096401.1| 30S ribosomal protein S1 [Marinitoga piezophila KA3]
 gi|372101199|gb|AEX85103.1| ribosomal protein S1 [Marinitoga piezophila KA3]
          Length = 519

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 170/387 (43%), Gaps = 31/387 (8%)

Query: 323 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 382
           YK+G  ++V++L     EG A G  KA+  + ++    ++  G VVKGK+      G IV
Sbjct: 63  YKKGEKIKVKLLKINDAEGQAFGSEKAAKKDEII---DEIVEGKVVKGKIKERVEKGYIV 119

Query: 383 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 442
           +    V+A  P        ++ P + F    E+ F V+  + +R     +  +V S+  +
Sbjct: 120 ELENVVRAFLP----GSLAMLNPNEPFP-REEMDFLVIKREERR----RRLNIVVSRKGL 170

Query: 443 LSSYAEA---TDRLIT--HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 497
           +  Y E    T  L T   G +T I++ G F+     +    P+SE+  D   + + MY 
Sbjct: 171 VDKYIEEFFNTHNLNTLVEGVVTGIKEFGLFISLNPYITALVPKSEISWDKKVDINEMYK 230

Query: 498 VGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY 554
           +G  VK  I+     +R+I++S       P    E D   + S+V G V  + P     +
Sbjct: 231 IGDKVKGIIIKLDKENRKISVSVKRLKDDPWETVEKDY-PVDSIVEGEVIEIFP-----F 284

Query: 555 VIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLI 612
             A    +G     H ++        ++ V+  G +   ++L +D +   + LS K  L 
Sbjct: 285 GFAVKLGEGIEGLVHESEIFWSGKRKIEDVVSVGDKVKVKVLSIDKDKKKITLSYKQVLG 344

Query: 613 NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 672
           +  + +      +H   +V G V  I+  G  ++    LTGF+  S+       ++   +
Sbjct: 345 DPWKDID---EKLHEGDIVDGVVEKILPNGLIIKLDNELTGFSHVSELSWNFVDNVEDLF 401

Query: 673 YVGQSVRSNILDVNSETGRITLSLKQS 699
             G  V+  +L V+ E  +I LS+KQ+
Sbjct: 402 KEGDKVKVKVLHVDKENRKIKLSVKQA 428



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 34/256 (13%)

Query: 1230 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1289
            D P + +EK  D   + IV+G V  +   G  + L   ++  V  S +        E   
Sbjct: 258  DDPWETVEK--DYPVDSIVEGEVIEIFPFGFAVKLGEGIEGLVHESEIFWSGKRKIEDVV 315

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1349
             +G  V  +VLS++   K++  TL           +I+    LH GDIV G ++++   G
Sbjct: 316  SVGDKVKVKVLSIDKDKKKI--TLSYKQVLGDPWKDID--EKLHEGDIVDGVVEKILPNG 371

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY- 1408
            L I ++N  L G  HVSELS + VDN+E +++ G+KVKVK+L VDKE R+I L +K +  
Sbjct: 372  LIIKLDN-ELTGFSHVSELSWNFVDNVEDLFKEGDKVKVKVLHVDKENRKIKLSVKQAKE 430

Query: 1409 --FKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIE 1466
              +K  ++ L+ + +E S + ++ VG                        G  +++ + E
Sbjct: 431  NPWKKVSNELK-NGDEISGKVVKYVGK-----------------------GAVIIVDEYE 466

Query: 1467 SRASVPPLEVNLDDEQ 1482
              A +P  ++NL++ Q
Sbjct: 467  VEAFIPKSKINLEENQ 482



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 121/276 (43%), Gaps = 36/276 (13%)

Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD-----EGQFDPLSGYDEGQFV 1189
            K+L  V    ++ G  L G +       + VS P   +D     +     +  Y +G+ +
Sbjct: 10   KMLDEVSEFHIKKGETLTGEIISISSDGVYVSAPGKAFDVYVGKDYLLKNIDEYKKGEKI 69

Query: 1190 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1249
            K K+L+I+      F  E + +                         E I+++    +V+
Sbjct: 70   KVKLLKINDAEGQAFGSEKAAKKD-----------------------EIIDEIVEGKVVK 106

Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1309
            G +K    KG  + L   + A  L  +L+   + +P + FP  ++    V+  E   +R+
Sbjct: 107  GKIKERVEKGYIVELENVVRA-FLPGSLA---MLNPNEPFPREEM-DFLVIKREERRRRL 161

Query: 1310 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1369
             + +           E  N  NL+   +V G +  ++ +GLFI++ N  +  L   SE+S
Sbjct: 162  NIVVSRKGLVDKYIEEFFNTHNLNT--LVEGVVTGIKEFGLFISL-NPYITALVPKSEIS 218

Query: 1370 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             D   +I  +Y+ G+KVK  I+K+DKE R+IS+ +K
Sbjct: 219  WDKKVDINEMYKIGDKVKGIIIKLDKENRKISVSVK 254



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 113/283 (39%), Gaps = 51/283 (18%)

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
           N++V G V  I E G F+     +T   P+S+    ++ D+++ Y +G  V+  I+ ++ 
Sbjct: 185 NTLVEGVVTGIKEFGLFISLNPYITALVPKSEISWDKKVDINEMYKIGDKVKGIIIKLDK 244

Query: 688 ETGRITLS---LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII--GS 742
           E  +I++S   LK     + +  +  +  +  E I +               GF +  G 
Sbjct: 245 ENRKISVSVKRLKDDPWETVEKDYPVDSIVEGEVIEIFPF------------GFAVKLGE 292

Query: 743 VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 802
            IEG VHES  F                +  +     V  G  ++  +L + K ++ + L
Sbjct: 293 GIEGLVHESEIFW---------------SGKRKIEDVVSVGDKVKVKVLSIDKDKKKITL 337

Query: 803 SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 862
           S K V  D +++ +                 L     V+ +VE +  N L++ L   N  
Sbjct: 338 SYKQVLGDPWKDIDEK---------------LHEGDIVDGVVEKILPNGLIIKLD--NEL 380

Query: 863 IGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 903
            G++ VS+  +N     +  F  G  V   V+ +   +   +L
Sbjct: 381 TGFSHVSELSWNFVDNVEDLFKEGDKVKVKVLHVDKENRKIKL 423



 Score = 45.1 bits (105), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 24/157 (15%)

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
            +G  V   VLSI+K+KK + L    ++  + D   DI        +HEGDIV G + KIL
Sbjct: 317  VGDKVKVKVLSIDKDKKKITL---SYKQVLGDPWKDIDEK-----LHEGDIVDGVVEKIL 368

Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
                GL++++   L G  H +EL    V +          + L  + EG  VK KVL + 
Sbjct: 369  P--NGLIIKLDNELTGFSHVSELSWNFVDN---------VEDL--FKEGDKVKVKVLHVD 415

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
            +  R    ++LS++ + +      S++L    +  GK
Sbjct: 416  KENR---KIKLSVKQAKENPWKKVSNELKNGDEISGK 449


>gi|339448321|ref|ZP_08651877.1| 30S ribosomal protein S1 [Lactobacillus fructivorans KCTC 3543]
          Length = 406

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 6/165 (3%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L P  IV+G V  +T+ G F+ L   +D  V +S +S  +V  P     +G+ V  +VLS
Sbjct: 201  LKPGDIVEGKVARLTNFGAFVDLG-GIDGLVHVSEISYEHVNKPSDVLKVGEEVKVKVLS 259

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
            V+P   R+ +++K +     S  E         G ++ G++KR+  +G F+ +    + G
Sbjct: 260  VDPDRNRISLSIKQTQPGPWSDIE----EKAPKGSVLDGKVKRLVDFGAFVEV-FPGVEG 314

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            L H+S++S  H+D    + ++GE VKVK+L V  E+ R++L MK+
Sbjct: 315  LVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQPEEHRLALSMKA 359



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            +S L  GDIV G++ R+ ++G F+ +   +  GL HVSE+S +HV+    + + GE+VKV
Sbjct: 198  MSTLKPGDIVEGKVARLTNFGAFVDLGGID--GLVHVSEISYEHVNKPSDVLKVGEEVKV 255

Query: 1389 KILKVDKEKRRISLGMKSS 1407
            K+L VD ++ RISL +K +
Sbjct: 256  KVLSVDPDRNRISLSIKQT 274



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +KPG +V+GKV  + +FGA V   GG+  L  +  +S   + KP    KVG E+  +V
Sbjct: 199 STLKPGDIVEGKVARLTNFGAFVDL-GGIDGLVHVSEISYEHVNKPSDVLKVGEEVKVKV 257

Query: 420 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V     RI+++ K+T       I     + +   +  G + ++   G FV  + GV+G
Sbjct: 258 LSVDPDRNRISLSIKQTQPGPWSDIEEKAPKGS---VLDGKVKRLVDFGAFVEVFPGVEG 314

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               S++      +PS +   G+ VK +++   P   R+ LS 
Sbjct: 315 LVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQPEEHRLALSM 357



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 156/391 (39%), Gaps = 54/391 (13%)

Query: 437 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--VQGFAPRSELGLDPGCEPSS 494
           K  LA L +  +     + +G +  I+     V    G  V+G  PR E+       P+S
Sbjct: 10  KDLLAALDNIKQVNVGYVVNGEVLAIDDDQQLVVGIEGAGVEGVIPRKEISAQREDNPTS 69

Query: 495 MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---DLVKLGSLVSGVVDVVTPNAV 551
            Y VG  VK  ++S I   +    S+++   R+      D +K  +     ++V    AV
Sbjct: 70  NYKVGDKVKVVVVSRIGDDKE-GGSYLLSIRRLEALKVWDEIKEKADKGETINVTVTRAV 128

Query: 552 V--VYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 608
              + V A G  +G IP   + DH ++     K     G E +  ++      N L+ + 
Sbjct: 129 KGGLVVNADGV-RGFIPASMITDHFVDDLNQFK-----GQELEVKIIEVVPEENRLILSH 182

Query: 609 YSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 666
            ++  + ++   D   S + P  +V G V  +   G FV  LG + G    S+       
Sbjct: 183 RAIAEAERKEARDRIMSTLKPGDIVEGKVARLTNFGAFVD-LGGIDGLVHVSEISYEHVN 241

Query: 667 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 726
             S    VG+ V+  +L V+ +  RI+LS+KQ+               +EEK        
Sbjct: 242 KPSDVLKVGEEVKVKVLSVDPDRNRISLSIKQTQPGPWSD--------IEEKAPK----- 288

Query: 727 HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE----- 781
                         GSV++GKV    DFG  V  E    V G +   Q++   ++     
Sbjct: 289 --------------GSVLDGKVKRLVDFGAFV--EVFPGVEGLVHISQISHKHIDKPSDV 332

Query: 782 --SGSVIQAAILDVAKAERLVDLSLKTVFID 810
             SG  ++  +LDV   E  + LS+K +  D
Sbjct: 333 LKSGEDVKVKVLDVQPEEHRLALSMKALEKD 363



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 148/352 (42%), Gaps = 31/352 (8%)

Query: 362 VKPGMVVKGKVIAVDSFGA-IVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVF-- 417
           V  G VV G+V+A+D     +V   G GV+ + P   +S      P   +KVG ++    
Sbjct: 22  VNVGYVVNGEVLAIDDDQQLVVGIEGAGVEGVIPRKEISAQREDNPTSNYKVGDKVKVVV 81

Query: 418 --RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT-HGWITKIEKHGCFVRFYNG 474
             R+   K     +   + L    L +     E  D+  T +  +T+  K G  V   +G
Sbjct: 82  VSRIGDDKEGGSYLLSIRRL--EALKVWDEIKEKADKGETINVTVTRAVKGGLVVN-ADG 138

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL 532
           V+GF P S +  D   +  + +  GQ ++ +I+  +P   R+ LS   + +  R    D 
Sbjct: 139 VRGFIPASMI-TDHFVDDLNQFK-GQELEVKIIEVVPEENRLILSHRAIAEAERKEARDR 196

Query: 533 V----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
           +    K G +V G V  +T     V +   G   G +    ++   EH      V+K G 
Sbjct: 197 IMSTLKPGDIVEGKVARLTNFGAFVDL---GGIDGLVHVSEIS--YEHVNKPSDVLKVGE 251

Query: 589 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFV 645
           E   ++L +D + + + LS K +     Q  P SD     P  SV+ G V  +++ G FV
Sbjct: 252 EVKVKVLSVDPDRNRISLSIKQT-----QPGPWSDIEEKAPKGSVLDGKVKRLVDFGAFV 306

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
                + G    S+         S     G+ V+  +LDV  E  R+ LS+K
Sbjct: 307 EVFPGVEGLVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQPEEHRLALSMK 358


>gi|300858350|ref|YP_003783333.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
 gi|375288519|ref|YP_005123060.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 3/99-5]
 gi|379715230|ref|YP_005303567.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 316]
 gi|383314109|ref|YP_005374964.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis P54B96]
 gi|384504528|ref|YP_005681198.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
 gi|384506621|ref|YP_005683290.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
 gi|384508709|ref|YP_005685377.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
 gi|384510800|ref|YP_005690378.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis PAT10]
 gi|385807399|ref|YP_005843796.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 267]
 gi|386740269|ref|YP_006213449.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 31]
 gi|387136462|ref|YP_005692442.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 42/02-A]
 gi|387138534|ref|YP_005694513.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis CIP
            52.97]
 gi|387140533|ref|YP_005696511.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1/06-A]
 gi|389850285|ref|YP_006352520.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 258]
 gi|300685804|gb|ADK28726.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
 gi|302206068|gb|ADL10410.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
 gi|302330619|gb|ADL20813.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
 gi|308276305|gb|ADO26204.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
 gi|341824739|gb|AEK92260.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis PAT10]
 gi|348606907|gb|AEP70180.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 42/02-A]
 gi|349735012|gb|AEQ06490.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis CIP
            52.97]
 gi|355392324|gb|AER68989.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1/06-A]
 gi|371575808|gb|AEX39411.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 3/99-5]
 gi|377653936|gb|AFB72285.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 316]
 gi|380869610|gb|AFF22084.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis P54B96]
 gi|383804792|gb|AFH51871.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 267]
 gi|384476963|gb|AFH90759.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 31]
 gi|388247591|gb|AFK16582.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 258]
          Length = 487

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAVDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QQIEAKIIELDKQRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL++ HV+  + +   G++  VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA 363



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 360



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|429758811|ref|ZP_19291324.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 181 str. F0379]
 gi|429173025|gb|EKY14562.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 181 str. F0379]
          Length = 485

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 188/418 (44%), Gaps = 56/418 (13%)

Query: 1005 SIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLF 1058
            ++    + V++IGS+  L    D +I     G  V G V KVD++  LL I    K +  
Sbjct: 9    AVSTPQVAVNDIGSREDLLAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEGV 66

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
            IL                 +G  +   VL   KE K  RL+L   +        + +   
Sbjct: 67   ILSRELSIKHDVNPDDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWGQ 119

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
            ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +     
Sbjct: 120  IEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE----- 172

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
                      ++ K++E+ +      +V LS R+ L+   S   ++              
Sbjct: 173  ----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------- 206

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   
Sbjct: 207  LHTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVE 265

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1357
            VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+ 
Sbjct: 266  VLDVDMDRERVSLSLKAT-----QEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED- 319

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1415
             + GL H+SEL++ HV+  E + + G++V VK++ +D E+RRISL +K +  + D ++
Sbjct: 320  GIEGLVHISELAQRHVELPEQVVKVGDEVFVKVIDIDLERRRISLSLKQANERVDPNS 377



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 7/173 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H+ ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 206 FLHT-LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 263

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      +  G +TK+   G FVR  +G
Sbjct: 264 VEVLDVDMDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDG 320

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 527
           ++G    SEL       P  +  VG  V  +++      RRI+LS      RV
Sbjct: 321 IEGLVHISELAQRHVELPEQVVKVGDEVFVKVIDIDLERRRISLSLKQANERV 373



 Score = 47.4 bits (111), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 79/371 (21%), Positives = 144/371 (38%), Gaps = 56/371 (15%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G + K++     +      +G     EL +     P  +  VG  ++  ++  
Sbjct: 38  NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQK 97

Query: 510 IPASRRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 561
                R+ LS           +  +V E+D      +V+G V  V    +++ +  +G+ 
Sbjct: 98  EDKEGRLLLSKKRAQYERAWGQIEKVKEED-----GVVTGTVIEVVKGGLILDIGLRGFL 152

Query: 562 KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPS 620
             ++        +E   V       G E + +++ LD   +N++LS +  L  +  ++ +
Sbjct: 153 PASL--------VEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 204

Query: 621 DASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
           +  H +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V 
Sbjct: 205 NFLHTLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 263

Query: 680 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 739
             +LDV+ +  R++LSLK +       +F + H                           
Sbjct: 264 VEVLDVDMDRERVSLSLK-ATQEDPWQTFARTH--------------------------A 296

Query: 740 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVA 794
           IG V+ GKV +   FG  V  E+  +    I+     H +L    V+ G  +   ++D+ 
Sbjct: 297 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPEQVVKVGDEVFVKVIDID 356

Query: 795 KAERLVDLSLK 805
              R + LSLK
Sbjct: 357 LERRRISLSLK 367



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 40  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKED 99

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 100 KEGRLLLSKKRAQYERAWGQIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 155

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 156 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 211

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 212 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 265

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 266 VLDVDMDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 321

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 322 EGLVHISELAQRHVELPEQVVKVGDEVFVKVIDIDLERRRISLSLKQA 369



 Score = 40.4 bits (93), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 130/304 (42%), Gaps = 48/304 (15%)

Query: 1031 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1081
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R      +IG+ 
Sbjct: 114  ERAWGQIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLAPYIGRE 172

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
            +   ++ ++K +  + L  R +   +     ++  + + T + +G +  G +S I++   
Sbjct: 173  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLHT-LQKGQVRSGVVSSIVNF-- 226

Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
            G  V +G  + G VH +EL    +  P    + GQ            V  +VL++     
Sbjct: 227  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE-----------VTVEVLDVDMDRE 274

Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
                V LSL+++ +    T +   +     PGK                 V  +   G F
Sbjct: 275  ---RVSLSLKATQEDPWQTFARTHAIGQVVPGK-----------------VTKLVPFGAF 314

Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
            + +   ++  V +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++ R  
Sbjct: 315  VRVEDGIEGLVHISELAQRHVELPEQVVKVGDEVFVKVIDIDLERRRISLSLKQANERVD 374

Query: 1322 SQSE 1325
              SE
Sbjct: 375  PNSE 378


>gi|392416422|ref|YP_006453027.1| ribosomal protein S1 [Mycobacterium chubuense NBB4]
 gi|390616198|gb|AFM17348.1| ribosomal protein S1 [Mycobacterium chubuense NBB4]
          Length = 480

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 187/414 (45%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S+    + +++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVALNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLTKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 804 LK 805
           LK
Sbjct: 362 LK 363



 Score = 47.4 bits (111), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 149/354 (42%), Gaps = 31/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    +D
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYSD 371


>gi|337290612|ref|YP_004629633.1| 30S ribosomal protein S1 [Corynebacterium ulcerans BR-AD22]
 gi|384515525|ref|YP_005710617.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 809]
 gi|397653858|ref|YP_006494541.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 0102]
 gi|334696726|gb|AEG81523.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 809]
 gi|334698918|gb|AEG83714.1| 30S ribosomal protein S1 [Corynebacterium ulcerans BR-AD22]
 gi|393402814|dbj|BAM27306.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 0102]
          Length = 487

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAVDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QQIEAKIIELDKQRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL++ HV+  + +   G++  VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA 363



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 360



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|392400474|ref|YP_006437074.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis Cp162]
 gi|390531552|gb|AFM07281.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis Cp162]
          Length = 487

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAVDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QQIEAKIIELDKQRN---NVVLSRRTWLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL++ HV+  + +   G++  VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA 363



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 360



 Score = 48.9 bits (115), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRTWLEQTQSEVRSEFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|172040820|ref|YP_001800534.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
 gi|448823792|ref|YP_007416958.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7111]
 gi|171852124|emb|CAQ05100.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
 gi|448277289|gb|AGE36713.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7111]
          Length = 486

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD++  LL I       + ++   +    +P+E+ E      +G  +   
Sbjct: 34   GDIVEGTIVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVE------VGDEIDAL 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++      + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEQLKENDEPVTGTVIEVVKG--GLIL 138

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG---------------QEIEAKIIELDKHRN---N 180

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAYLEETQSAVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + I   GE
Sbjct: 282  WRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQIVNVGE 340

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +V VK++ +D E+RRISL +K +
Sbjct: 341  EVMVKVIDIDLERRRISLSLKQA 363



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 166/398 (41%), Gaps = 50/398 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTIVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVEVGDEIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEQLKE-NDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAYLEETQSAVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+  +       +   VG+ V   ++D++ E  RI+LSLKQ+     D  F +
Sbjct: 315 IEGLVHISELAERHVEVPDQIVNVGEEVMVKVIDIDLERRRISLSLKQA-----DEDFTE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|332637853|ref|ZP_08416716.1| SSU ribosomal protein S1P [Weissella cibaria KACC 11862]
          Length = 410

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 42/282 (14%)

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            DIV   +++++ G  GLVV +   + G V  + ++N  V D            L+ Y +G
Sbjct: 114  DIVEAPVTQVVKG--GLVVDV-EGVRGFVPASMIENRFVQD------------LNQY-KG 157

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            Q ++ K++EI+        + LS R   D ++   S+ L+              +LS   
Sbjct: 158  QTIRAKIIEINAA---DSRLILSRR---DVLNEERSAALA----------RVFNELSVGD 201

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  
Sbjct: 202  VVEGKVARMTNFGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLDPEK 260

Query: 1307 KRVEVTLKTSDSRT--ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
            +R+ +++K +      A+ SE         G ++ G +KRV  +G F+ +    + GL H
Sbjct: 261  ERISLSIKATQPGPWEAAASEAPE------GTVLEGTVKRVVDFGAFVEV-FPGVEGLVH 313

Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            VS++S  H+ N   + +AG+KVKVK+L+V+ +K+R+SL +K+
Sbjct: 314  VSQISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSIKA 355



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1349
            G+ +  +++ +     R+ ++ +   ++ R+A+ + + N   L VGD+V G++ R+ ++G
Sbjct: 157  GQTIRAKIIEINAADSRLILSRRDVLNEERSAALARVFN--ELSVGDVVEGKVARMTNFG 214

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             FI +   +  GL HVSE+S + V     +   GE VKVK+L +D EK RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKAT 270



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
           G VV+GKV  + +FGA +   GGV  L  +  +S   + +P     VG ++  +VLG+  
Sbjct: 200 GDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLDP 258

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           + +RI+++ K T      A  S   E T   +  G + ++   G FV  + GV+G    S
Sbjct: 259 EKERISLSIKATQPGPWEAAASEAPEGT---VLEGTVKRVVDFGAFVEVFPGVEGLVHVS 315

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++       PS +   G  VK +++   P  +R++LS 
Sbjct: 316 QISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSI 353



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 30/230 (13%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL-ADHLEHAT-VMKSVIKPGYEF 590
           VK+G +V G V  +     V+  I     +G IP   L AD   +   ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELTADRDANVNDLVKVGDVLDLVV 77

Query: 591 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
              +  D E  + LLS +   + + +     AS  + + +V   V  +++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEG- 134

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS +             
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRD------------ 180

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
              L EE+ A L          +      +G V+EGKV    +FG  +  
Sbjct: 181 --VLNEERSAALA---------RVFNELSVGDVVEGKVARMTNFGAFIDL 219



 Score = 41.2 bits (95), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 149/356 (41%), Gaps = 35/356 (9%)

Query: 360 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           ++VK G VVKG+V+A+D +   IV   G GV+ + P+  ++        +   V   +  
Sbjct: 16  AEVKVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELT------ADRDANVNDLVKV 69

Query: 418 RVLGVKSKRITVTHKKT-----LVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCF 468
             +       T+   K      L K +L    ++ E   +     I    +T++ K G  
Sbjct: 70  GDVLDLVVVSTIGSDKEGGSYLLSKRRLEARRAWEEIASKHNVDDIVEAPVTQVVKGGLV 129

Query: 469 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTR 526
           V    GV+GF P S +  +   +  + Y  GQ ++ +I+    A  R+ LS   ++   R
Sbjct: 130 VDV-EGVRGFVPASMI-ENRFVQDLNQYK-GQTIRAKIIEINAADSRLILSRRDVLNEER 186

Query: 527 VSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 582
            +    V     +G +V G V  +T     + +   G   G +    ++   E  +    
Sbjct: 187 SAALARVFNELSVGDVVEGKVARMTNFGAFIDL---GGVDGLVHVSEISH--ERVSQPSD 241

Query: 583 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 641
           V+  G +   ++L LD E   + LS K +     +   S+A      +V+ G V  +++ 
Sbjct: 242 VLSVGEDVKVKVLGLDPEKERISLSIKATQPGPWEAAASEAPE---GTVLEGTVKRVVDF 298

Query: 642 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
           G FV     + G    S+      A+ S     G  V+  +L+VN +  R++LS+K
Sbjct: 299 GAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSIK 354


>gi|384045064|ref|YP_005493081.1| 30S ribosomal protein S1 [Bacillus megaterium WSH-002]
 gi|345442755|gb|AEN87772.1| 30S ribosomal protein S1-like protein [Bacillus megaterium WSH-002]
          Length = 384

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 6/186 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +E L    +++G V+ +T  G F+ +   +D  V +S LS   VE P      G  V  R
Sbjct: 188  LESLKEGQVLEGTVQRLTDFGAFVDVG-GVDGLVHISQLSHTRVEKPSDVVAEGDTVKVR 246

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VLSV+  + RV +++K  D+     S I+  + L  GD+V G +KR+ S+G F+ +    
Sbjct: 247  VLSVDKSTGRVSLSIK--DTLEGPWSNIS--TKLRQGDVVDGTVKRLVSFGAFVEV-LPG 301

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H+S++S  H+     +   GEKV VK+L V++++RR+SL ++    +   D    
Sbjct: 302  VEGLVHISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSIRDLEEEEQEDYGDY 361

Query: 1419 SSEEES 1424
              +EES
Sbjct: 362  ELQEES 367



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K G V++G V  +  FGA V   GGV  L  +  +S   + KP      G  +  RVL 
Sbjct: 191 LKEGQVLEGTVQRLTDFGAFVDV-GGVDGLVHISQLSHTRVEKPSDVVAEGDTVKVRVLS 249

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V   + R++++ K TL +   + +S+     D  +  G + ++   G FV    GV+G  
Sbjct: 250 VDKSTGRVSLSIKDTL-EGPWSNISTKLRQGD--VVDGTVKRLVSFGAFVEVLPGVEGLV 306

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             S++       P  +   G+ V  +++      RR++LS 
Sbjct: 307 HISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSI 347



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 42/67 (62%)

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
             +++L VG+ V G I +VE   +++ + N+ L G+  +SEL+  H++    + + G +V+
Sbjct: 15   EVTSLEVGETVKGTITKVEEKQVYVDVPNSKLDGIIPISELASLHIEKAGDVIQEGAEVE 74

Query: 1388 VKILKVD 1394
             K++KV+
Sbjct: 75   AKVIKVE 81



 Score = 40.4 bits (93), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 15/249 (6%)

Query: 457 GWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515
           G ITK+E+   +V   N  + G  P SEL      +   +   G  V+ +++        
Sbjct: 27  GTITKVEEKQVYVDVPNSKLDGIIPISELASLHIEKAGDVIQEGAEVEAKVIK--VEDDL 84

Query: 516 INLSFMMKPTRVSEDDL-VKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 572
           + LS        + D L  KL  G +   VV  +    +VV +  +G+   ++   H  D
Sbjct: 85  LVLSKRAVDAEKAWDGLEAKLSSGEVFEAVVKEIVKGGLVVDIGVRGFIPASLVETHFVD 144

Query: 573 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVV 631
                      +K       ++ LD E + ++LS +  +     QQ  +    +    V+
Sbjct: 145 DFAEYQDQTLTVK-------VVELDKEKNRVILSHRAVVEEELVQQKENVLESLKEGQVL 197

Query: 632 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
            G V  + + G FV  +G + G    S+    +    S     G +V+  +L V+  TGR
Sbjct: 198 EGTVQRLTDFGAFVD-VGGVDGLVHISQLSHTRVEKPSDVVAEGDTVKVRVLSVDKSTGR 256

Query: 692 ITLSLKQSC 700
           ++LS+K + 
Sbjct: 257 VSLSIKDTL 265


>gi|400537313|ref|ZP_10800846.1| 30S ribosomal protein S1 [Mycobacterium colombiense CECT 3035]
 gi|400329342|gb|EJO86842.1| 30S ribosomal protein S1 [Mycobacterium colombiense CECT 3035]
          Length = 478

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 148/381 (38%), Gaps = 53/381 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLKTV---FIDRFREA 815
           R + LSLK     + D F  A
Sbjct: 356 RRISLSLKQANEDYTDEFDPA 376


>gi|32472024|ref|NP_865018.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
 gi|32397396|emb|CAD72702.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
          Length = 691

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 96/159 (60%), Gaps = 5/159 (3%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V+G V+N+T+ G FI L   +D  + +S++S    +  P +    G+ +  R+LSV+   
Sbjct: 489  VKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQR 548

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ + LK  D+      +I +      G +V G++ ++ ++G+FI +E+  L GL H+S
Sbjct: 549  RRIALGLKQLDN-DPWDGDIPD--KYQPGQLVKGEVTKITNFGVFIGLED-GLEGLLHIS 604

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            EL+E  V++ E + + G+ ++VK+L+VD ++R+I L +K
Sbjct: 605  ELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLK 643



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 184/399 (46%), Gaps = 56/399 (14%)

Query: 1023 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1082
            E+ D + G+ V G + ++++EWAL+ +    K++  +    + P E Q       IG  V
Sbjct: 132  EQQDYNSGKIVDGRIVELNDEWALVDVG--FKSEGTVGLDEWGPEEDQP-----KIGDTV 184

Query: 1083 TGHVLSINKEKKLLRLVLRPF-QDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSG 1139
               +  +  E   L     P+    +S +  +  I  + M   + EG +V G + + + G
Sbjct: 185  KVLIEEMEDE---LGAADDPYGMISLSKRKAEKIIEWEAMMETVAEGQVVTGTVIRKIKG 241

Query: 1140 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1199
              GL+V IG ++     F     + +  P    D G F        G+ V+ +VL+I  T
Sbjct: 242  --GLLVDIGVNV-----FLPGSQVDIRRP---GDIGDF-------IGRVVQAEVLKIDDT 284

Query: 1200 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1259
             R   ++ +S RS ++     + + L             +++L    I +G VKN+   G
Sbjct: 285  RR---NIVISRRSLIERQREEDRAYL-------------MQELEVGQIRKGIVKNIADFG 328

Query: 1260 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1319
             F+ L   +D  + +++++   +  P +   I + +  +VL ++   +++ + LK  D  
Sbjct: 329  AFVDLG-GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRN 387

Query: 1320 TASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIE 1377
                 E    + ++H G++V      V SYG F+ +E   + GL H+SE+S    V++  
Sbjct: 388  PWENIETKYPVESVHPGEVV-----NVMSYGAFVKLE-PGIEGLVHISEMSWTKRVNHPS 441

Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
             +   G+K+ V IL VD E +++SLGMK +  KN  D +
Sbjct: 442  ELVNIGDKIDVMILGVDPEGQQLSLGMKQT-LKNPWDEV 479



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IG++V   VL ++   + + ++ ++   R   +     +  L VG I  G +K +  +G 
Sbjct: 270  IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 329

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
            F+ +   +  GL H+++++ + + +   +    ++++VK+L +D+EK++I+LG+K    +
Sbjct: 330  FVDLGGID--GLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKD-R 386

Query: 1411 NDADNLQMSSEEES 1424
            N  +N++     ES
Sbjct: 387  NPWENIETKYPVES 400



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 171/469 (36%), Gaps = 71/469 (15%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           V  G VV G VI     G +V    GV    P    S+ +I +PG       + + RV+ 
Sbjct: 225 VAEGQVVTGTVIRKIKGGLLVDI--GVNVFLP---GSQVDIRRPGDI----GDFIGRVVQ 275

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 473
            +  +I  T +  ++  +  I     E    L        I  G +  I   G FV    
Sbjct: 276 AEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDL-G 334

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 533
           G+ G    +++  +    P+ M  + Q ++ +++      ++I L    K     E+   
Sbjct: 335 GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIET 394

Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------G 587
           K        V+ V P  VV  +    + K     E L  H+   +  K V  P      G
Sbjct: 395 KY------PVESVHPGEVVNVMSYGAFVKLEPGIEGLV-HISEMSWTKRVNHPSELVNIG 447

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
            + D  +L +D E   L L  K +L N   ++            V G V N+   G F+ 
Sbjct: 448 DKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV---LERYPEGKDVKGKVRNLTNYGAFIE 504

Query: 647 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
               + G    S     ++ A  S+    GQ +   IL V+ +  RI L LKQ      D
Sbjct: 505 LEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDNDPWD 564

Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
                +                          +  G +++G+V +  +FGV +  E+   
Sbjct: 565 GDIPDK--------------------------YQPGQLVKGEVTKITNFGVFIGLEDG-- 596

Query: 766 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 807
           + G +   +LA   VE        G  I+  +L V   ER + LSLK V
Sbjct: 597 LEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 645



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 167/412 (40%), Gaps = 70/412 (16%)

Query: 55  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 114
           +G++V   VL++DD ++ I   +  L  R     +   ++ ++ G +    VK+I D G 
Sbjct: 270 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 329

Query: 115 ILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 162
            +  G     G L            P   L+ +  I+VK        V  IDR ++ + L
Sbjct: 330 FVDLG--GIDGLLHITDMAWERIGHPTEMLSIDQEIEVK--------VLHIDREKQKIAL 379

Query: 163 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
                D +      TK      ++ + PG +V+     ++  G  +       G V I  
Sbjct: 380 GLKQKDRNPWENIETK----YPVESVHPGEVVN-----VMSYGAFVKLEPGIEGLVHISE 430

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSH--- 270
           +  T    +     N   K++  IL VDP  + + L +     NP+  +  R P      
Sbjct: 431 MSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEVLERYPEGKDVK 490

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEG 326
            KV ++ +    + ++ G+  LL +     +  ++ P+ V            LEK    G
Sbjct: 491 GKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEV------------LEK----G 534

Query: 327 SCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 383
             +  RIL     R    L    L    ++G +      +PG +VKG+V  + +FG  + 
Sbjct: 535 QEIECRILSVDEQRRRIALGLKQLDNDPWDGDI--PDKYQPGQLVKGEVTKITNFGVFIG 592

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKK 433
              G++ L  +  ++E ++  P +  KVG  +  +VL V +  ++I ++ K+
Sbjct: 593 LEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKR 644


>gi|379747704|ref|YP_005338525.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
 gi|379755006|ref|YP_005343678.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-02]
 gi|379762496|ref|YP_005348893.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-64]
 gi|387876359|ref|YP_006306663.1| 30S ribosomal protein S1 [Mycobacterium sp. MOTT36Y]
 gi|443306116|ref|ZP_21035904.1| 30S ribosomal protein S1 [Mycobacterium sp. H4Y]
 gi|378800068|gb|AFC44204.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
 gi|378805222|gb|AFC49357.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-02]
 gi|378810438|gb|AFC54572.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-64]
 gi|386789817|gb|AFJ35936.1| 30S ribosomal protein S1 [Mycobacterium sp. MOTT36Y]
 gi|442767680|gb|ELR85674.1| 30S ribosomal protein S1 [Mycobacterium sp. H4Y]
          Length = 480

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 148/381 (38%), Gaps = 53/381 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLKTV---FIDRFREA 815
           R + LSLK     + D F  A
Sbjct: 356 RRISLSLKQANEDYTDEFDPA 376


>gi|406031209|ref|YP_006730099.1| 30S ribosomal protein S1 [Mycobacterium indicus pranii MTCC 9506]
 gi|405129756|gb|AFS15011.1| 30S ribosomal protein S1 [Mycobacterium indicus pranii MTCC 9506]
          Length = 480

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407



 Score = 48.9 bits (115), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 148/381 (38%), Gaps = 53/381 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLKTV---FIDRFREA 815
           R + LSLK     + D F  A
Sbjct: 356 RRISLSLKQANEDYTDEFDPA 376


>gi|357018753|ref|ZP_09081016.1| 30S ribosomal protein S1 [Mycobacterium thermoresistibile ATCC 19527]
 gi|356481471|gb|EHI14576.1| 30S ribosomal protein S1 [Mycobacterium thermoresistibile ATCC 19527]
          Length = 478

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VSVGDQVEALVLT--KEDKDGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGRE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE H++  + + + G+ V VK++ +D ++RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHIEVPDQVVQVGDDVMVKVIDIDLDRRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 148/376 (39%), Gaps = 46/376 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDQVEALVLTKEDKD 97

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  EE  +    I+     H ++    V+ G  +   ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHIEVPDQVVQVGDDVMVKVIDIDLDRRRISLS 361

Query: 804 LKTVFIDRFREANSNR 819
           LK    D   E + ++
Sbjct: 362 LKQANEDYSEEFDPSK 377



 Score = 45.8 bits (107), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG ++   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDQVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGTIEALKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   VG  V   ++D++ +  RI+LSLKQ+
Sbjct: 318 EGLVHISELSERHIEVPDQVVQVGDDVMVKVIDIDLDRRRISLSLKQA 365


>gi|160892582|ref|ZP_02073372.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50]
 gi|156865623|gb|EDO59054.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
            L2-50]
          Length = 650

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 8/170 (4%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E  E +   M V+G VKNVT  G FI L    D  + +S +S G VESP+K F +G  V 
Sbjct: 471  ELFEKIEVGMTVEGTVKNVTDFGAFIDLG-GADGLLHISEMSWGRVESPKKMFKVGDTVK 529

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
              +  +     ++ ++LK  ++     +E        VG +V G+I R+  +G F+ +E 
Sbjct: 530  AFIKDIN--GDKIALSLKFDETNPWLNAE----EKYAVGTVVTGKIARMTDFGAFVELE- 582

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
              +  L HVS++S DHV   E +Y+ G++++ K++    E+++ISL +K+
Sbjct: 583  PGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVDFKPEEKKISLSVKA 632



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 18/251 (7%)

Query: 274 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSC 328
           GDI     V  V+ GL +L +   T +  PA + +SD+ E+ + K     +E +  E + 
Sbjct: 392 GDILTGKVVQVVNGGLNVLYE--ETRIFIPASL-VSDLYEKNLDKYLDQDIEFQLTEFNP 448

Query: 329 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 388
            + RI+G R    +     KA+A + L      ++ GM V+G V  V  FGA +   GG 
Sbjct: 449 KKRRIIGNRKKLIVER---KAAAAKEL---FEKIEVGMTVEGTVKNVTDFGAFIDL-GGA 501

Query: 389 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 448
             L  +  MS   +  P K FKVG  +   +  +   +I ++ K       L     YA 
Sbjct: 502 DGLLHISEMSWGRVESPKKMFKVGDTVKAFIKDINGDKIALSLKFDETNPWLNAEEKYAV 561

Query: 449 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 508
            T   +  G I ++   G FV    GV      S++  D   +P  +Y +G  ++ +++ 
Sbjct: 562 GT---VVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVD 618

Query: 509 SIPASRRINLS 519
             P  ++I+LS
Sbjct: 619 FKPEEKKISLS 629



 Score = 42.0 bits (97), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G VV GK+  +  FGA V+   GV AL  +  +S   + KP   +K+G E+  +V+  K 
Sbjct: 562 GTVVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVDFKP 621

Query: 424 -SKRITVTHKKTL 435
             K+I+++ K  L
Sbjct: 622 EEKKISLSVKALL 634



 Score = 41.2 bits (95), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 1225 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1284
            LS   D     L   E  +   +V G +  +T  G F+ L   +DA + +S +S  +V  
Sbjct: 542  LSLKFDETNPWLNAEEKYAVGTVVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAK 601

Query: 1285 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
            PE  + IG  +  +V+  +P  K++ +++K
Sbjct: 602  PEDVYKIGDEIEAKVVDFKPEEKKISLSVK 631


>gi|440716171|ref|ZP_20896684.1| 30S ribosomal protein S1 [Rhodopirellula baltica SWK14]
 gi|436438795|gb|ELP32313.1| 30S ribosomal protein S1 [Rhodopirellula baltica SWK14]
          Length = 613

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 96/159 (60%), Gaps = 5/159 (3%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V+G V+N+T+ G FI L   +D  + +S++S    +  P +    G+ +  R+LSV+   
Sbjct: 411  VKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQR 470

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ + LK  D+      +I +      G +V G++ ++ ++G+FI +E+  L GL H+S
Sbjct: 471  RRIALGLKQLDN-DPWDGDIPD--KYQPGQLVKGEVTKITNFGVFIGLED-GLEGLLHIS 526

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            EL+E  V++ E + + G+ ++VK+L+VD ++R+I L +K
Sbjct: 527  ELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLK 565



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 184/399 (46%), Gaps = 56/399 (14%)

Query: 1023 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1082
            E+ D + G+ V G + ++++EWAL+ +    K++  +    + P E Q       IG  V
Sbjct: 54   EQQDYNSGKIVDGRIVELNDEWALVDVG--FKSEGTVGLDEWGPEEDQP-----KIGDTV 106

Query: 1083 TGHVLSINKEKKLLRLVLRPF-QDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSG 1139
               +  +  E   L     P+    +S +  +  I  + M   + EG +V G + + + G
Sbjct: 107  KVLIEEMEDE---LGAADDPYGMISLSKRKAEKIIEWEAMMETVAEGQVVTGTVIRKIKG 163

Query: 1140 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1199
              GL+V IG ++     F     + +  P    D G F        G+ V+ +VL+I  T
Sbjct: 164  --GLLVDIGVNV-----FLPGSQVDIRRP---GDIGDF-------IGRVVQAEVLKIDDT 206

Query: 1200 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1259
             R   ++ +S RS ++     + + L             +++L    I +G VKN+   G
Sbjct: 207  RR---NIVISRRSLIERQREEDRAYL-------------MQELEVGQIRKGIVKNIADFG 250

Query: 1260 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1319
             F+ L   +D  + +++++   +  P +   I + +  +VL ++   +++ + LK  D  
Sbjct: 251  AFVDLG-GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRN 309

Query: 1320 TASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIE 1377
                 E    + ++H G++V      V SYG F+ +E   + GL H+SE+S    V++  
Sbjct: 310  PWENIETKYPVESVHPGEVV-----NVMSYGAFVKLE-PGIEGLVHISEMSWTKRVNHPS 363

Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
             +   G+K+ V IL VD E +++SLGMK +  KN  D +
Sbjct: 364  ELVNIGDKIDVMILGVDPEGQQLSLGMKQT-LKNPWDEV 401



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 171/469 (36%), Gaps = 71/469 (15%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           V  G VV G VI     G +V    GV    P    S+ +I +PG       + + RV+ 
Sbjct: 147 VAEGQVVTGTVIRKIKGGLLVDI--GVNVFLP---GSQVDIRRPGDI----GDFIGRVVQ 197

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 473
            +  +I  T +  ++  +  I     E    L        I  G +  I   G FV    
Sbjct: 198 AEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDL-G 256

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 533
           G+ G    +++  +    P+ M  + Q ++ +++      ++I L    K     E+   
Sbjct: 257 GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIET 316

Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------G 587
           K        V+ V P  VV  +    + K     E L  H+   +  K V  P      G
Sbjct: 317 KY------PVESVHPGEVVNVMSYGAFVKLEPGIEGLV-HISEMSWTKRVNHPSELVNIG 369

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
            + D  +L +D E   L L  K +L N   ++            V G V N+   G F+ 
Sbjct: 370 DKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV---LERYPEGKDVKGKVRNLTNYGAFIE 426

Query: 647 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
               + G    S     ++ A  S+    GQ +   IL V+ +  RI L LKQ      D
Sbjct: 427 LEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDNDPWD 486

Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
                +                          +  G +++G+V +  +FGV +  E+   
Sbjct: 487 GDIPDK--------------------------YQPGQLVKGEVTKITNFGVFIGLEDG-- 518

Query: 766 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 807
           + G +   +LA   VE        G  I+  +L V   ER + LSLK V
Sbjct: 519 LEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 567



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IG++V   VL ++   + + ++ ++   R   +     +  L VG I  G +K +  +G 
Sbjct: 192  IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 251

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
            F+ +   +  GL H+++++ + + +   +    ++++VK+L +D+EK++I+LG+K    +
Sbjct: 252  FVDLGGID--GLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKD-R 308

Query: 1411 NDADNLQMSSEEES 1424
            N  +N++     ES
Sbjct: 309  NPWENIETKYPVES 322



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 167/413 (40%), Gaps = 70/413 (16%)

Query: 55  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 114
           +G++V   VL++DD ++ I   +  L  R     +   ++ ++ G +    VK+I D G 
Sbjct: 192 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 251

Query: 115 ILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 162
            +  G     G L            P   L+ +  I+VK        V  IDR ++ + L
Sbjct: 252 FVDLG--GIDGLLHITDMAWERIGHPTEMLSIDQEIEVK--------VLHIDREKQKIAL 301

Query: 163 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
                D +      TK      ++ + PG +V+     ++  G  +       G V I  
Sbjct: 302 GLKQKDRNPWENIETK----YPVESVHPGEVVN-----VMSYGAFVKLEPGIEGLVHISE 352

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSH--- 270
           +  T    +     N   K++  IL VDP  + + L +     NP+  +  R P      
Sbjct: 353 MSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEVLERYPEGKDVK 412

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEG 326
            KV ++ +    + ++ G+  LL +     +  ++ P+ V            LEK    G
Sbjct: 413 GKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEV------------LEK----G 456

Query: 327 SCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 383
             +  RIL     R    L    L    ++G +      +PG +VKG+V  + +FG  + 
Sbjct: 457 QEIECRILSVDEQRRRIALGLKQLDNDPWDGDI--PDKYQPGQLVKGEVTKITNFGVFIG 514

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 434
              G++ L  +  ++E ++  P +  KVG  +  +VL V +  ++I ++ K+ 
Sbjct: 515 LEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 567


>gi|15604817|ref|NP_219601.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/UW-3/CX]
 gi|255506673|ref|ZP_05382312.1| 30S ribosomal protein S1 [Chlamydia trachomatis D(s)2923]
 gi|385243304|ref|YP_005811150.1| 30S ribosomal protein S1P [Chlamydia trachomatis D-EC]
 gi|385244184|ref|YP_005812028.1| 30S ribosomal protein S1P [Chlamydia trachomatis D-LC]
 gi|385245070|ref|YP_005813893.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/150]
 gi|386262454|ref|YP_005815733.1| 30S ribosomal protein S1P [Chlamydia trachomatis Sweden2]
 gi|389857795|ref|YP_006360037.1| 30S ribosomal protein S1P [Chlamydia trachomatis F/SW4]
 gi|389858668|ref|YP_006360909.1| 30S ribosomal protein S1P [Chlamydia trachomatis E/SW3]
 gi|6831540|sp|O84100.1|RS1_CHLTR RecName: Full=30S ribosomal protein S1
 gi|3328495|gb|AAC67689.1| S1 Ribosomal Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|289525142|emb|CBJ14614.1| SSU ribosomal protein S1P [Chlamydia trachomatis Sweden2]
 gi|296434686|gb|ADH16864.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/150]
 gi|297748227|gb|ADI50773.1| SSU ribosomal protein S1P [Chlamydia trachomatis D-EC]
 gi|297749107|gb|ADI51785.1| SSU ribosomal protein S1P [Chlamydia trachomatis D-LC]
 gi|380249742|emb|CCE13263.1| SSU ribosomal protein S1P [Chlamydia trachomatis F/SW4]
 gi|380250617|emb|CCE12374.1| SSU ribosomal protein S1P [Chlamydia trachomatis E/SW3]
 gi|440525012|emb|CCP50263.1| 30S ribosomal protein S1 [Chlamydia trachomatis K/SotonK1]
 gi|440526794|emb|CCP52278.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/SotonD1]
 gi|440527688|emb|CCP53172.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/SotonD5]
 gi|440528579|emb|CCP54063.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/SotonD6]
 gi|440529470|emb|CCP54954.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/SotonE4]
 gi|440530363|emb|CCP55847.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/SotonE8]
 gi|440531260|emb|CCP56770.1| 30S ribosomal protein S1 [Chlamydia trachomatis F/SotonF3]
 gi|440532151|emb|CCP57661.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/SotonG1]
          Length = 569

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K        + E+       VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIEVM----FPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1425
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 385
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 386 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
              +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EVMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 503 KCRIMSSIPASRRINLSF 520
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471



 Score = 40.8 bits (94), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 131/584 (22%), Positives = 227/584 (38%), Gaps = 101/584 (17%)

Query: 536  GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL- 594
            G+++ G V  ++ + VVV V  K  S+G IP     D  E  TV       G E +  L 
Sbjct: 52   GAILKGTVVDISKDFVVVDVGLK--SEGVIPMSEFIDSSEGLTV-------GAEVEVYLD 102

Query: 595  -VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
               D+E   +L   K +     +Q     +H    S+V G +   ++ G  V     +  
Sbjct: 103  QTEDDEGKVVLSREKAT---RQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEA 157

Query: 654  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 713
            F P S+  + +  +L    YVG+     IL +N +   + +S ++               
Sbjct: 158  FLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVDRRNVVVSRRE--------------L 201

Query: 714  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------EHSDVY 767
            L  E+I+         +EL  +E   IG   +G V    DFGV +  +        +D+ 
Sbjct: 202  LEAERIS-------KKAEL--IEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMT 252

Query: 768  GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK--- 824
                 H      VE    ++  IL V K +  V L LK       +E N     +KK   
Sbjct: 253  WKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIEKKYPP 304

Query: 825  -KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQK 879
             KR R              IV+++     +    E    I G   VS+ +  K    P +
Sbjct: 305  GKRVR------------GKIVKLLPYGAFI----EIEEGIEGLIHVSEMSWVKNIVDPNE 348

Query: 880  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 939
                G  V   V+++      G++ L LK     +T  +     +  Y +G  V AEI  
Sbjct: 349  VVNKGDEVEVVVLSI--QKDEGKISLGLK-----QTKHNPWDNIEEKYPIGLRVTAEIKN 401

Query: 940  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 999
            +      ++   G  G IHI++++  K   V +    FK G TV A I+  S   + KK 
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNTVEAVIL--SVDKESKKI 457

Query: 1000 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1059
             L    + P+     E+    +F      +G  ++G V K+    A + +   ++  + +
Sbjct: 458  TLGVKQLTPNPWDEIEV----MF-----PVGSDISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1103
             + + +P    + +    IG  V+  V+ ++ + K + L ++ F
Sbjct: 509  SELSEKP--FAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEF 550


>gi|359420845|ref|ZP_09212776.1| 30S ribosomal protein S1 [Gordonia araii NBRC 100433]
 gi|358243118|dbj|GAB10845.1| 30S ribosomal protein S1 [Gordonia araii NBRC 100433]
          Length = 487

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVTVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDALVKVIDIDLERRRISLSLKQA 365



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 155/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         ++   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPNEVVTVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAA------ 789
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE    + A       
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDALV 346

Query: 790 -ILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 147/354 (41%), Gaps = 31/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H      V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVTVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDALVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|385676805|ref|ZP_10050733.1| 30S ribosomal protein S1 [Amycolatopsis sp. ATCC 39116]
          Length = 498

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 186/410 (45%), Gaps = 64/410 (15%)

Query: 1009 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1058
            + + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++  
Sbjct: 14   AQVAVNDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSREL 73

Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
             +    +P E+        +G  V   VL   KE K  RL+L   +        + +   
Sbjct: 74   SIKHDVDPGEV------VSVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGT 120

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
            ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G +     
Sbjct: 121  IEELKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----- 173

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
                      ++ K++E+ +      +V LS R+ L+   S   S+              
Sbjct: 174  ----------LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF------------- 207

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +  L+   + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   
Sbjct: 208  LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVE 266

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1357
            VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E  
Sbjct: 267  VLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE- 320

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             + GL H+SEL+E HV+  E + + G +V VK++ +D E+RRISL +K +
Sbjct: 321  GIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQA 370



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 153/358 (42%), Gaps = 32/358 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVSVGDEVEALVLQKED 100

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 708
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    +TD  F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQANEGFTTDTEF 380



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 146/366 (39%), Gaps = 46/366 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++  
Sbjct: 39  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVSVGDEVEALVLQK 98

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 99  EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP 154

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 155 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 210

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 211 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 269

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 270 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 302

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V+ G+ +   ++D+    R 
Sbjct: 303 PGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRR 362

Query: 800 VDLSLK 805
           + LSLK
Sbjct: 363 ISLSLK 368


>gi|389859545|ref|YP_006361785.1| 30S ribosomal protein S1P [Chlamydia trachomatis F/SW5]
 gi|380248865|emb|CCE14152.1| SSU ribosomal protein S1P [Chlamydia trachomatis F/SW5]
          Length = 569

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K        + E+       VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIEVM----FPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1425
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 385
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 386 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
              +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EVMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 503 KCRIMSSIPASRRINLSF 520
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471



 Score = 40.8 bits (94), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 131/584 (22%), Positives = 227/584 (38%), Gaps = 101/584 (17%)

Query: 536  GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL- 594
            G+++ G V  ++ + VVV V  K  S+G IP     D  E  TV       G E +  L 
Sbjct: 52   GAILKGTVVDISKDFVVVDVGLK--SEGVIPMSEFIDSSEGLTV-------GAEVEVYLD 102

Query: 595  -VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
               D+E   +L   K +     +Q     +H    S+V G +   ++ G  V     +  
Sbjct: 103  QTEDDEGKVVLSREKAT---RQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEA 157

Query: 654  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 713
            F P S+  + +  +L    YVG+     IL +N +   + +S ++               
Sbjct: 158  FLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVDRRNVVVSRRE--------------L 201

Query: 714  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------EHSDVY 767
            L  E+I+         +EL  +E   IG   +G V    DFGV +  +        +D+ 
Sbjct: 202  LEAERIS-------KKAEL--IEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMT 252

Query: 768  GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK--- 824
                 H      VE    ++  IL V K +  V L LK       +E N     +KK   
Sbjct: 253  WKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIEKKYPP 304

Query: 825  -KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQK 879
             KR R              IV+++     +    E    I G   VS+ +  K    P +
Sbjct: 305  GKRVR------------GKIVKLLPYGAFI----EIEEGIEGLIHVSEMSWVKNIVDPNE 348

Query: 880  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 939
                G  V   V+++      G++ L LK     +T  +     +  Y +G  V AEI  
Sbjct: 349  VVNKGDEVEVVVLSI--QKDEGKISLGLK-----QTKHNPWDNIEEKYPIGLRVTAEIKN 401

Query: 940  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 999
            +      ++   G  G IHI++++  K   V +    FK G TV A I+  S   + KK 
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNTVEAVIL--SVDKESKKI 457

Query: 1000 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1059
             L    + P+     E+    +F      +G  ++G V K+    A + +   ++  + +
Sbjct: 458  TLGVKQLTPNPWDEIEV----MF-----PVGSDISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1103
             + + +P    + +    IG  V+  V+ ++ + K + L ++ F
Sbjct: 509  SELSEKP--FAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEF 550


>gi|237785408|ref|YP_002906113.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758320|gb|ACR17570.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
          Length = 488

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 186/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G V K+D++  LL I       + ++   +
Sbjct: 9    VAVNDIGSTEDFLAAIDSTIKYFNDGDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHEIDPNEVVE------VGDEIDALVLT--KEDKEGRLILSKKR-----AQYERAWGTIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKHRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDMDRERVSLSLKAT-----QEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAERHVEVPDQVVNVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 166/398 (41%), Gaps = 50/398 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S    + P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKHEIDPNEVVEVGDEIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQELEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDMDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+  +       +   VG+ V   ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVEVPDQVVNVGEEVMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|357590914|ref|ZP_09129580.1| 30S ribosomal protein S1 [Corynebacterium nuruki S6-4]
          Length = 487

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 184/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEDFLAAVDKTIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDEIDALVLT--KEDKDGRLILSKKR-----AQYERAWGTIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 116  DLKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QELEAKIIELDKQRN---NVVLSRRAWLEETQSAVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVSVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HVD  + I   G+ + VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAERHVDVPDQIVSVGQDLMVKVIDIDLERRRISLSLKQA 363



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVSVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  +  VGQ +  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAERHVDVPDQIVSVGQDLMVKVIDIDLERRRISLSL 360



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 153/355 (43%), Gaps = 33/355 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KDGRLILSKKRAQYERAWGTIEDLKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQELEAKIIELDKQRNNVVLSRRAWLEETQSAVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H + + SV   G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVSV---GDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
           + G    S+  +       +   VGQ +   ++D++ E  RI+LSLKQ+    +D
Sbjct: 315 IEGLVHISELAERHVDVPDQIVSVGQDLMVKVIDIDLERRRISLSLKQADEDYSD 369



 Score = 40.4 bits (93), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 117/287 (40%), Gaps = 46/287 (16%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL- 593
           G +V G V  V  + V++ +   GY ++G IP+  L+  ++H      V++ G E D L 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDI---GYKTEGVIPSRELS--IKHDVDPDEVVEVGDEIDALV 88

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
           L  +++   L+LS K +    A     D      +  V G V  +++ G  +     L G
Sbjct: 89  LTKEDKDGRLILSKKRAQYERAWGTIEDLKE--KDEPVTGTVIEVVKGGLILDI--GLRG 144

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 713
           F P S     +  DL    Y+GQ + + I++++ +   + LS +++    T ++   E F
Sbjct: 145 FLPASLVEMRRVRDLQP--YIGQELEAKIIELDKQRNNVVLS-RRAWLEETQSAVRSE-F 200

Query: 714 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 773
           L +     LQ                 G V +G V    +FG  V       V G +   
Sbjct: 201 LHQ-----LQK----------------GQVRKGVVSSIVNFGAFVDL---GGVDGLVHVS 236

Query: 774 QLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
           +L+          V  G  +   +LDV      V LSLK    D +R
Sbjct: 237 ELSWKHIDHPSEVVSVGDEVTVEVLDVDLDRERVSLSLKATQEDPWR 283


>gi|295696379|ref|YP_003589617.1| RNA binding S1 domain-containing protein [Kyrpidia tusciae DSM 2912]
 gi|295411981|gb|ADG06473.1| RNA binding S1 domain protein [Kyrpidia tusciae DSM 2912]
          Length = 383

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 101/183 (55%), Gaps = 6/183 (3%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L P  I+ G V+ +T+ G F+ +   +D  V +S L+   VE P +    G  V  +VL 
Sbjct: 186  LQPGDIITGKVQRLTNFGAFVDVG-GVDGLVHISELAWHRVEHPSEVVKEGDEVTVKVLK 244

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
            V+P  +RV +++K ++    S          HVGD+V G ++R+ S+G F+ +E   + G
Sbjct: 245  VDPERERVSLSIKEANPGPWSGVS----ERYHVGDVVTGTVRRLVSFGAFVELE-PGVEG 299

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1421
            L H+S+++   +   + +   G++V+VKIL V++E +RISL ++ +    +  +++  +E
Sbjct: 300  LVHISQIANRRIGTPQEVLEPGQEVRVKILDVNEEDQRISLSIREAEGDRNRRDVERYNE 359

Query: 1422 EES 1424
             + 
Sbjct: 360  RQG 362



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            L  L  GDI+ G+++R+ ++G F+ +   +  GL H+SEL+   V++   + + G++V V
Sbjct: 183  LHRLQPGDIITGKVQRLTNFGAFVDVGGVD--GLVHISELAWHRVEHPSEVVKEGDEVTV 240

Query: 1389 KILKVDKEKRRISLGMKSS 1407
            K+LKVD E+ R+SL +K +
Sbjct: 241  KVLKVDPERERVSLSIKEA 259



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++PG ++ GKV  + +FGA V   GGV  L  +  ++   +  P +  K G E+  +VL 
Sbjct: 186 LQPGDIITGKVQRLTNFGAFVDV-GGVDGLVHISELAWHRVEHPSEVVKEGDEVTVKVLK 244

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQG 477
           V  +R  V+     +  K A    ++  ++R     +  G + ++   G FV    GV+G
Sbjct: 245 VDPERERVS-----LSIKEANPGPWSGVSERYHVGDVVTGTVRRLVSFGAFVELEPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               S++       P  +   GQ V+ +I+      +RI+LS 
Sbjct: 300 LVHISQIANRRIGTPQEVLEPGQEVRVKILDVNEEDQRISLSI 342



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 142/345 (41%), Gaps = 25/345 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G VVKG++  ++     V        + P+  +S   +  P    +VG E+  RV  +  
Sbjct: 16  GDVVKGRITKIEDGQVFVDVGYKFDGVIPIGELSALRVESPSDVVQVGDEVEVRVQRIND 75

Query: 425 KRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           +   +   K  V ++ A   L    E+ +       +  + K G       GV+ F P S
Sbjct: 76  EEGKLVLSKKAVDAEKAWERLQQRFESQETFEVQ--VADVVKGGLVADV--GVRAFIPAS 131

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSEDDLVKL--G 536
            L      E  S Y  G+ ++ ++     +  ++ LS       +  +  E+ L +L  G
Sbjct: 132 -LVERHFVEDFSEYK-GRTLRVKVAELDRSDNKVILSQKAVLEEEYQQKKEEVLHRLQPG 189

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFD-QLL 594
            +++G V  +T     V V   G   G +    LA H +EH +    V+K G E   ++L
Sbjct: 190 DIITGKVQRLTNFGAFVDV---GGVDGLVHISELAWHRVEHPS---EVVKEGDEVTVKVL 243

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D E   + LS K +   +       +   H   VV G V  ++  G FV     + G 
Sbjct: 244 KVDPERERVSLSIKEA---NPGPWSGVSERYHVGDVVTGTVRRLVSFGAFVELEPGVEGL 300

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
              S+  + +     +    GQ VR  ILDVN E  RI+LS++++
Sbjct: 301 VHISQIANRRIGTPQEVLEPGQEVRVKILDVNEEDQRISLSIREA 345



 Score = 42.0 bits (97), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 1325 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
            ++ +L  LH GD+V G+I ++E   +F+ +      G+  + ELS   V++   + + G+
Sbjct: 6    DMTDLVALHKGDVVKGRITKIEDGQVFVDV-GYKFDGVIPIGELSALRVESPSDVVQVGD 64

Query: 1385 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1423
            +V+V++ +++ E+ ++ L  K+   +   + LQ   E +
Sbjct: 65   EVEVRVQRINDEEGKLVLSKKAVDAEKAWERLQQRFESQ 103


>gi|239917616|ref|YP_002957174.1| 30S ribosomal protein S1 [Micrococcus luteus NCTC 2665]
 gi|239838823|gb|ACS30620.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665]
          Length = 485

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 187/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS + L    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 10   VAINDIGSAEDLLAAIDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 69

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+        +G  V   VL+  KE K  RL+L   +        DI     +
Sbjct: 70   KHDVDPDEV------VAVGDTVEALVLT--KEDKEGRLILSKKRAQYERAWGDI-----E 116

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 117  KIKEEDGVVEGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG--------- 165

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+           L K+E
Sbjct: 166  ------QKLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSNF----------LHKLE 206

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
                  +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 207  ---KGQVRNGTVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 262

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
             V+   +RV ++LK      A+Q +   L +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 263  EVDMDRERVSLSLK------ATQEDPWQLFARTHALGQVVPGKVTKLVPFGAFVRVED-G 315

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+  H+D  E +    +++ VK++ +D E+RRISL +K +
Sbjct: 316  IEGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSLKQA 364


>gi|296164500|ref|ZP_06847071.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
            BAA-614]
 gi|295900100|gb|EFG79535.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
            BAA-614]
          Length = 480

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLK 805
           R + LSLK
Sbjct: 356 RRISLSLK 363


>gi|289705499|ref|ZP_06501891.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
 gi|289557728|gb|EFD51027.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
          Length = 485

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS + L    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 10   VAINDIGSAEDLLAAIDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 69

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+        +G  V   VL+  KE K  RL+L   +        DI     +
Sbjct: 70   KHDVDPDEV------VAVGDTVEALVLT--KEDKEGRLILSKKRAQYERAWGDI-----E 116

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 117  KIKEEDGVVEGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG--------- 165

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 166  ------QKLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSNF-------------LH 203

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 204  KLEKGQVRNGTVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 262

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
             V+   +RV ++LK      A+Q +   L +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 263  EVDMDRERVSLSLK------ATQEDPWQLFARTHALGQVVPGKVTKLVPFGAFVRVED-G 315

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+  H+D  E +    +++ VK++ +D E+RRISL +K +
Sbjct: 316  IEGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSLKQA 364



 Score = 40.8 bits (94), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 143/348 (41%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 35  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVAVGDTVEALVLTKED 94

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E     +  G + ++ K G  +    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGDIEKIKEEDG--VVEGTVIEVVKGGLILDI--GLRGFLPAS 150

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 151 LVEMRRVRDLAP----YIGQKLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSNFLHKLE 206

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + +G V  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRNGTVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 260

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 261 VLEVDMDRERVSLSLKATQEDPWQLF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 316

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 317 EGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSLKQA 364


>gi|383824746|ref|ZP_09979918.1| 30S ribosomal protein S1 [Mycobacterium xenopi RIVM700367]
 gi|383336812|gb|EID15207.1| 30S ribosomal protein S1 [Mycobacterium xenopi RIVM700367]
          Length = 486

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVSSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VKVGDKVEALVLT--KEDKDGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE H++  + +   G++V VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHIEVADQVVGVGDEVMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 144/366 (39%), Gaps = 46/366 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDKVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKDGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++A   V  G  +   ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHIEVADQVVGVGDEVMVKVIDIDLERRR 357

Query: 800 VDLSLK 805
           + LSLK
Sbjct: 358 ISLSLK 363



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 153/354 (43%), Gaps = 31/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG ++   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDKVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELSERHIEVADQVVGVGDEVMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|237802530|ref|YP_002887724.1| 30S ribosomal protein S1 [Chlamydia trachomatis B/Jali20/OT]
 gi|231273764|emb|CAX10545.1| SSU ribosomal protein S1P [Chlamydia trachomatis B/Jali20/OT]
          Length = 569

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K        + E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIE----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1425
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSTGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 385
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 386 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +   G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSTGDKV 529

Query: 503 KCRIMSSIPASRRINLSF 520
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 41.6 bits (96), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471


>gi|453363488|dbj|GAC80781.1| 30S ribosomal protein S1 [Gordonia malaquae NBRC 108250]
          Length = 491

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +PSE+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VTVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          V+ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------VEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D ++RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI ++     D  I  G I K+++    +      +G  P  EL +    +PS +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVTVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVSVGDDAMV 346

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLDRRRISLSLKQANEDYAEEFDPSK 377



 Score = 47.4 bits (111), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVTVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ V+ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   VG      ++D++ +  RI+LSLKQ+
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQA 365


>gi|433647758|ref|YP_007292760.1| ribosomal protein S1 [Mycobacterium smegmatis JS623]
 gi|433297535|gb|AGB23355.1| ribosomal protein S1 [Mycobacterium smegmatis JS623]
          Length = 481

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S+    + +++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAINDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 151/380 (39%), Gaps = 46/380 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRR 357

Query: 800 VDLSLKTVFIDRFREANSNR 819
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377



 Score = 48.1 bits (113), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407


>gi|158317247|ref|YP_001509755.1| 30S ribosomal protein S1 [Frankia sp. EAN1pec]
 gi|158112652|gb|ABW14849.1| RNA binding S1 domain protein [Frankia sp. EAN1pec]
          Length = 493

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 190/422 (45%), Gaps = 67/422 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 24   VAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSI 83

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 84   KHDVDPHEV------VTVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 130

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 131  KLKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 181

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 182  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LA 217

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 218  QLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 276

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   +
Sbjct: 277  DVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRVDE-GI 330

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1419
             GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   N+A +L   
Sbjct: 331  EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NEASSLVAE 387

Query: 1420 SE 1421
             E
Sbjct: 388  GE 389



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKEDKE 110

Query: 514 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 222

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 804 LK 805
           LK
Sbjct: 375 LK 376



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 150/353 (42%), Gaps = 31/353 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKED 108

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKEE-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 220

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S+
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEASS 383


>gi|340794195|ref|YP_004759658.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
 gi|340534105|gb|AEK36585.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
          Length = 486

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 173/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD++  LL I       + ++   +    +P E+ E      IG  V   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVE------IGDEVDAL 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKDGRLILSKKR-----AQYERAWGTIEELKEKDEPVTGTVIEVVKG--GLIL 138

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG---------------QELEAKIIELDKQRN---N 180

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E H+D  + I   G+
Sbjct: 282  WRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHIDVPDQIVTVGQ 340

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
             + VK++ +D E+RRISL +K +
Sbjct: 341  DLMVKVIDIDLERRRISLSLKQA 363



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 167/398 (41%), Gaps = 50/398 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG+  ++G E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEIGDEVDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KDGRLILSKKRAQYERAWGTIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQELEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+  +       +   VGQ +   ++D++ E  RI+LSLKQ+     D  F +
Sbjct: 315 IEGLVHISELAERHIDVPDQIVTVGQDLMVKVIDIDLERRRISLSLKQA-----DEDFTE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWMEGF 405


>gi|237804447|ref|YP_002888601.1| 30S ribosomal protein S1 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231272747|emb|CAX09651.1| SSU ribosomal protein S1P [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 569

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K        + E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIE----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1425
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHNAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 385
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 386 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 503 KCRIMSSIPASRRINLSF 520
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471


>gi|449134245|ref|ZP_21769746.1| 30S ribosomal protein S1 [Rhodopirellula europaea 6C]
 gi|448886875|gb|EMB17263.1| 30S ribosomal protein S1 [Rhodopirellula europaea 6C]
          Length = 598

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 96/159 (60%), Gaps = 5/159 (3%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V+G V+N+T+ G FI L   +D  + +S++S    +  P +    G+ +  R+LSV+   
Sbjct: 396  VKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQR 455

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ + LK  D+      +I +      G +V G++ ++ ++G+FI +E+  L GL H+S
Sbjct: 456  RRIALGLKQLDN-DPWDGDIPD--KYQPGQLVKGEVTKITNFGVFIGLED-GLEGLLHIS 511

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            EL+E  V++ E + + G+ ++VK+L+VD ++R+I L +K
Sbjct: 512  ELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLK 550



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 184/399 (46%), Gaps = 56/399 (14%)

Query: 1023 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1082
            E+ D + G+ V G + ++++EWAL+ +    K++  +    + P E Q       IG  V
Sbjct: 39   EQQDYNSGKIVDGRIVELNDEWALVDVG--FKSEGTVGLDEWGPEEDQP-----KIGDTV 91

Query: 1083 TGHVLSINKEKKLLRLVLRPF-QDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSG 1139
               +  +  E   L     P+    +S +  +  I  + M   + EG +V G + + + G
Sbjct: 92   KVLIEEMEDE---LGAADDPYGMISLSKRKAEKIIEWEAMMETVAEGQVVTGTVIRKIKG 148

Query: 1140 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1199
              GL+V IG ++     F     + +  P    D G F        G+ V+ +VL+I  T
Sbjct: 149  --GLLVDIGVNV-----FLPGSQVDIRRP---GDIGDF-------IGRVVQAEVLKIDDT 191

Query: 1200 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1259
             R   ++ +S RS ++     + + L             +++L    I +G VKN+   G
Sbjct: 192  RR---NIVISRRSLIERQREEDRAYL-------------MQELEVGQIRKGIVKNIADFG 235

Query: 1260 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1319
             F+ L   +D  + +++++   +  P +   I + +  +VL ++   +++ + LK  D  
Sbjct: 236  AFVDLG-GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRN 294

Query: 1320 TASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIE 1377
                 E    + ++H G++V      V SYG F+ +E   + GL H+SE+S    V++  
Sbjct: 295  PWENIETKYPVESVHPGEVV-----NVMSYGAFVKLE-PGIEGLVHISEMSWTKRVNHPS 348

Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
             +   G+K+ V IL VD E +++SLGMK +  KN  D +
Sbjct: 349  ELVNIGDKIDVMILGVDPEGQQLSLGMKQT-LKNPWDEV 386



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 171/469 (36%), Gaps = 71/469 (15%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           V  G VV G VI     G +V    GV    P    S+ +I +PG       + + RV+ 
Sbjct: 132 VAEGQVVTGTVIRKIKGGLLVDI--GVNVFLP---GSQVDIRRPGDI----GDFIGRVVQ 182

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 473
            +  +I  T +  ++  +  I     E    L        I  G +  I   G FV    
Sbjct: 183 AEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDL-G 241

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 533
           G+ G    +++  +    P+ M  + Q ++ +++      ++I L    K     E+   
Sbjct: 242 GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIET 301

Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------G 587
           K        V+ V P  VV  +    + K     E L  H+   +  K V  P      G
Sbjct: 302 KY------PVESVHPGEVVNVMSYGAFVKLEPGIEGLV-HISEMSWTKRVNHPSELVNIG 354

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
            + D  +L +D E   L L  K +L N   ++            V G V N+   G F+ 
Sbjct: 355 DKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV---LERYPEGKDVKGKVRNLTNYGAFIE 411

Query: 647 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
               + G    S     ++ A  S+    GQ +   IL V+ +  RI L LKQ      D
Sbjct: 412 LEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDNDPWD 471

Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
                +                          +  G +++G+V +  +FGV +  E+   
Sbjct: 472 GDIPDK--------------------------YQPGQLVKGEVTKITNFGVFIGLEDG-- 503

Query: 766 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 807
           + G +   +LA   VE        G  I+  +L V   ER + LSLK V
Sbjct: 504 LEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 552



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IG++V   VL ++   + + ++ ++   R   +     +  L VG I  G +K +  +G 
Sbjct: 177  IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 236

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
            F+ +   +  GL H+++++ + + +   +    ++++VK+L +D+EK++I+LG+K    +
Sbjct: 237  FVDLGGID--GLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKD-R 293

Query: 1411 NDADNLQMSSEEES 1424
            N  +N++     ES
Sbjct: 294  NPWENIETKYPVES 307



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 167/413 (40%), Gaps = 70/413 (16%)

Query: 55  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 114
           +G++V   VL++DD ++ I   +  L  R     +   ++ ++ G +    VK+I D G 
Sbjct: 177 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 236

Query: 115 ILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 162
            +  G     G L            P   L+ +  I+VK        V  IDR ++ + L
Sbjct: 237 FVDLG--GIDGLLHITDMAWERIGHPTEMLSIDQEIEVK--------VLHIDREKQKIAL 286

Query: 163 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
                D +      TK      ++ + PG +V+     ++  G  +       G V I  
Sbjct: 287 GLKQKDRNPWENIETK----YPVESVHPGEVVN-----VMSYGAFVKLEPGIEGLVHISE 337

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSH--- 270
           +  T    +     N   K++  IL VDP  + + L +     NP+  +  R P      
Sbjct: 338 MSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEVLERYPEGKDVK 397

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEG 326
            KV ++ +    + ++ G+  LL +     +  ++ P+ V            LEK    G
Sbjct: 398 GKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEV------------LEK----G 441

Query: 327 SCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 383
             +  RIL     R    L    L    ++G +      +PG +VKG+V  + +FG  + 
Sbjct: 442 QEIECRILSVDEQRRRIALGLKQLDNDPWDGDI--PDKYQPGQLVKGEVTKITNFGVFIG 499

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 434
              G++ L  +  ++E ++  P +  KVG  +  +VL V +  ++I ++ K+ 
Sbjct: 500 LEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 552


>gi|377557965|ref|ZP_09787587.1| 30S ribosomal protein S1 [Gordonia otitidis NBRC 100426]
 gi|377524870|dbj|GAB32752.1| 30S ribosomal protein S1 [Gordonia otitidis NBRC 100426]
          Length = 487

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VDD-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  ++   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDDG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDDGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|358463314|ref|ZP_09173384.1| RNA binding S1 domain protein [Frankia sp. CN3]
 gi|357070427|gb|EHI80131.1| RNA binding S1 domain protein [Frankia sp. CN3]
          Length = 492

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 189/423 (44%), Gaps = 67/423 (15%)

Query: 1010 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1059
             + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   
Sbjct: 23   QVAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELS 82

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
            +    +P E+        +G  V   VL   KE K  RL+L   +        + +   +
Sbjct: 83   IKHDVDPHEV------VSVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTI 129

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +      
Sbjct: 130  EKLKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------ 181

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                     ++ K++E+ +      +V LS R+ L+   S   S+              +
Sbjct: 182  ---------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------L 216

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 217  SQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 275

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   
Sbjct: 276  LDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGKVTKLVPFGAFVRVDE-G 329

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   N+A  L  
Sbjct: 330  IEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NEASGLAG 386

Query: 1419 SSE 1421
              E
Sbjct: 387  DGE 389



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDKE 110

Query: 514 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  S +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLAKG 222

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG V+ GKV
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGKV 314

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 804 LK 805
           LK
Sbjct: 375 LK 376



 Score = 43.9 bits (102), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 149/352 (42%), Gaps = 31/352 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKED 108

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLA 220

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGKVTKLVPFGAFVRVDEGI 330

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEAS 382


>gi|385241460|ref|YP_005809300.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/11023]
 gi|296438403|gb|ADH20556.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/11023]
 gi|440534832|emb|CCP60342.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/Bour]
          Length = 569

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K        + E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIE----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1425
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 385
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 386 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 503 KCRIMSSIPASRRINLSF 520
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471



 Score = 40.4 bits (93), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 132/584 (22%), Positives = 226/584 (38%), Gaps = 101/584 (17%)

Query: 536  GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL- 594
            G+++ G V  ++ + VVV V  K  S+G IP     D  E  TV       G E +  L 
Sbjct: 52   GAILKGTVVDISKDFVVVDVGLK--SEGVIPMSEFIDSSEGLTV-------GAEVEVYLD 102

Query: 595  -VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
               D+E   +L   K +     +Q     +H    S+V G +   ++ G  V     +  
Sbjct: 103  QTEDDEGKVVLSREKAT---RQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEA 157

Query: 654  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 713
            F P S+  + +  +L    YVG+     IL +N +   + +S ++               
Sbjct: 158  FLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVDRRNVVVSRRE--------------L 201

Query: 714  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------EHSDVY 767
            L  E+I+         +EL  +E   IG   +G V    DFGV +  +        +D+ 
Sbjct: 202  LEAERIS-------KKAEL--IEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMT 252

Query: 768  GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK--- 824
                 H      VE    ++  IL V K +  V L LK       +E N     +KK   
Sbjct: 253  WKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIEKKYPP 304

Query: 825  -KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQK 879
             KR R              IV+++     +    E    I G   VS+ +  K    P +
Sbjct: 305  GKRVR------------GKIVKLLPYGAFI----EIEEGIEGLIHVSEMSWVKNIVDPNE 348

Query: 880  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 939
                G  V   V+++      G++ L LK     +T  +     +  Y +G  V AEI  
Sbjct: 349  VVNKGDEVEVVVLSI--QKDEGKISLGLK-----QTKHNPWDNIEEKYPIGLRVTAEIKN 401

Query: 940  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 999
            +      ++   G  G IHI++++  K   V +    FK G TV A I+  S   + KK 
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNTVEAVIL--SVDKESKKI 457

Query: 1000 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1059
             L    + P+     EI       E    +G  ++G V K+    A + +   ++  + +
Sbjct: 458  TLGVKQLTPNPW--DEI-------EAMFPVGSDISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1103
             + + +P    + +    IG  V+  V+ ++ + K + L ++ F
Sbjct: 509  SELSEKP--FAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEF 550


>gi|312198706|ref|YP_004018767.1| RNA binding S1 domain-containing protein [Frankia sp. EuI1c]
 gi|311230042|gb|ADP82897.1| RNA binding S1 domain protein [Frankia sp. EuI1c]
          Length = 493

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 185/410 (45%), Gaps = 68/410 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 24   VAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 83

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHV--LSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1118
                +P E+           AV  HV  L + KE K  RL+L   +        + +   
Sbjct: 84   KHDVDPHEV----------VAVGDHVEALVLQKEDKEGRLILSKKR-----AQYERAWGT 128

Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
            ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +     
Sbjct: 129  IEKLKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----- 181

Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
                      ++ K++E+ +      +V LS R+ L+   S   S+              
Sbjct: 182  ----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF------------- 215

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +  L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   
Sbjct: 216  LSQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVE 274

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1357
            VL V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++  
Sbjct: 275  VLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRVDE- 328

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             + GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +
Sbjct: 329  GIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA 378



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVAVGDHVEALVLQKEDKE 110

Query: 514 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  S +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLAKG 222

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 804 LK 805
           LK
Sbjct: 375 LK 376



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVAVGDHVEALVLQKED 108

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLA 220

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA 378


>gi|397670587|ref|YP_006512122.1| 30S ribosomal protein S1 [Propionibacterium propionicum F0230a]
 gi|395141590|gb|AFN45697.1| 30S ribosomal protein S1 [Propionibacterium propionicum F0230a]
          Length = 482

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 181/414 (43%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            + + S + V + GS   F    D +I     G  V+G V KVD +  LL I       + 
Sbjct: 5    TTEASTVAVDDFGSPEAFMAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P ++        +G  +    L   KE K  RL+L   +        + 
Sbjct: 65   SKELSIKHDVDPFDV------VRVGDEI--EALVQQKEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    E  +V G + +++ G  GL+V IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEKIKEEDGVVSGSVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVGME- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S               
Sbjct: 169  --------------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVEVGTP 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +      + LH +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLEVDMDRERVSLSLKAT-----QEDPWQTFARLHQIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +    + GL HVSEL+E HV+  E +   G++V VK++ +D E+RR+SL +K +
Sbjct: 313  V-GDGIEGLVHVSELAERHVEIPEQVVSVGDEVMVKVIDIDLERRRVSLSLKQA 365



 Score = 44.7 bits (104), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 143/347 (41%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P    +VG E+   V   + 
Sbjct: 36  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFDVVRVGDEIEALVQQKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E     +  G + ++ K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEKIKEEDG--VVSGSVIEVVKGGLIVDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG  ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 152 LVEMRRVRDLQP----YVGMELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 593
            G +  GVV  +      V +   G   G +    L+  H++H   +  V  P     ++
Sbjct: 208 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPNEVVEVGTPVTV--EV 262

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLT 652
           L +D +   + LS K +  +  Q      + +H    +V G V  ++  G FVR    + 
Sbjct: 263 LEVDMDRERVSLSLKATQEDPWQTF----ARLHQIGQIVPGKVTKLVPFGAFVRVGDGIE 318

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   VG  V   ++D++ E  R++LSLKQ+
Sbjct: 319 GLVHVSELAERHVEIPEQVVSVGDEVMVKVIDIDLERRRVSLSLKQA 365


>gi|303245616|ref|ZP_07331899.1| ribosomal protein S1 [Desulfovibrio fructosovorans JJ]
 gi|302492879|gb|EFL52744.1| ribosomal protein S1 [Desulfovibrio fructosovorans JJ]
          Length = 576

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 152/348 (43%), Gaps = 34/348 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
           G VV G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQVVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ 266

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           + +++++  K+ +      I   Y E T RL   G +T +  +G FV    GV+G    S
Sbjct: 267 EKQKVSLGMKQLVSDPWENIAGKYPEGT-RLA--GKVTNLVDYGAFVELEAGVEGLVHIS 323

Query: 483 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 537
           E+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V      G+
Sbjct: 324 EMSWTRKLRHPSQMVHVGDEVEVVVLSVDPEKKRISLG--MKQVRPNPWDIVAEKYPEGT 381

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 591
           ++ G V  +T   + +     G   G     H++D     +  K V  PG  F       
Sbjct: 382 ILEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKTGDIVM 432

Query: 592 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 649
            ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGTMVKGTVTNITDFGLFVEVEE 488

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 489 GIEGLVHVSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 63/385 (16%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1085
            GQ VTG V  +  E+ +      L   + I D +++    P EL       H+G  +   
Sbjct: 208  GQVVTGRVKNI-TEYGVFVDLGGLDGLMHITDMSWKRIKHPKEL------VHLGDELELK 260

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VLS ++EK+ + L ++     +SD       +N+     EG  + G+++ ++    G  V
Sbjct: 261  VLSFDQEKQKVSLGMKQL---VSDPW-----ENIAGKYPEGTRLAGKVTNLVDY--GAFV 310

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
            ++   + G VH +E+           +      P      G  V+  VL +    +    
Sbjct: 311  ELEAGVEGLVHISEMS----------WTRKLRHPSQMVHVGDEVEVVVLSVDPEKK---- 356

Query: 1206 VELSLRSSLDGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
                 R SL GM     N  D+              E      I++G VKN+T  G FI 
Sbjct: 357  -----RISL-GMKQVRPNPWDIVA------------EKYPEGTILEGSVKNITEFGIFIG 398

Query: 1264 LSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
            +   +D  + +S++S    V  P + F  G +V  +VL+V+  +++  + +K       S
Sbjct: 399  IEDGIDGLIHVSDISWTKKVRHPGEMFKTGDIVMAKVLTVDKENEKFTLGIKQ-----LS 453

Query: 1323 QSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1381
            +     + + + VG +V G +  +  +GLF+ +E   + GL HVSE+S   V     +Y+
Sbjct: 454  EDPWTRVPDTYPVGTMVKGTVTNITDFGLFVEVEE-GIEGLVHVSEISRKKVKTPAELYK 512

Query: 1382 AGEKVKVKILKVDKEKRRISLGMKS 1406
             G++++ K++ V  ++RR+ L +KS
Sbjct: 513  EGDEIEAKVIHVSADERRLGLSIKS 537



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L    +V G VKN+T  G F+ L   LD  + ++++S   ++ P++   +G  +  +VLS
Sbjct: 205  LEEGQVVTGRVKNITEYGVFVDLG-GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
             +   ++V + +K    +  S    N       G  + G++  +  YG F+ +E   + G
Sbjct: 264  FDQEKQKVSLGMK----QLVSDPWENIAGKYPEGTRLAGKVTNLVDYGAFVELE-AGVEG 318

Query: 1362 LCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            L H+SE+S    + +   +   G++V+V +L VD EK+RISLGMK
Sbjct: 319  LVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPEKKRISLGMK 363



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 70/123 (56%), Gaps = 6/123 (4%)

Query: 1285 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQI 1342
            P+ +  +G+    RVL +      V V+ +    + R + + ++  L  L  G +V G++
Sbjct: 158  PDMDALVGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL--LKTLEEGQVVTGRV 215

Query: 1343 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
            K +  YG+F+ +    L GL H++++S   + + + +   G+++++K+L  D+EK+++SL
Sbjct: 216  KNITEYGVFVDL--GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQEKQKVSL 273

Query: 1403 GMK 1405
            GMK
Sbjct: 274  GMK 276



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 152/389 (39%), Gaps = 79/389 (20%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--- 507
           D +IT   + +I+  G +     GV+ F P S + L P  +  ++  VGQ  + R++   
Sbjct: 121 DDVITGRIVRRIK--GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKIN 176

Query: 508 ---SSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV-------- 553
              S++  SRR+ L       R    DL+K    G +V+G V  +T   V V        
Sbjct: 177 RRRSNVIVSRRVLLEERRDSMR---KDLLKTLEEGQVVTGRVKNITEYGVFVDLGGLDGL 233

Query: 554 -YVIAKGYSKGTIPTE--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 610
            ++    + +   P E  HL D LE                ++L  D E   + L  K  
Sbjct: 234 MHITDMSWKRIKHPKELVHLGDELEL---------------KVLSFDQEKQKVSLGMKQL 278

Query: 611 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLS 669
           + +  + +   A      + + G V N+++ G FV     + G    S+    ++    S
Sbjct: 279 VSDPWENI---AGKYPEGTRLAGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPS 335

Query: 670 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 729
           +  +VG  V   +L V+ E  RI+L +KQ   +  D        ++ EK           
Sbjct: 336 QMVHVGDEVEVVVLSVDPEKKRISLGMKQVRPNPWD--------IVAEK----------- 376

Query: 730 SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESG 783
                   +  G+++EG V    +FG+ +  E+      H     +    +  G   ++G
Sbjct: 377 --------YPEGTILEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKTG 428

Query: 784 SVIQAAILDVAKAERLVDLSLKTVFIDRF 812
            ++ A +L V K      L +K +  D +
Sbjct: 429 DIVMAKVLTVDKENEKFTLGIKQLSEDPW 457



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 168/384 (43%), Gaps = 35/384 (9%)

Query: 55  VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG V+T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQVVTGRVKNITEYG 222

Query: 114 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV 169
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQEKQKVSLG-----M 275

Query: 170 SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 229
            + V+   + I+      G  ++ +V ++++ G  +       G V I  +  T    + 
Sbjct: 276 KQLVSDPWENIA-GKYPEGTRLAGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHP 334

Query: 230 KNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIYDQSKVV 283
               +   +V   +L VDP  + + L +     NP+ ++  + P   +  G + + ++  
Sbjct: 335 SQMVHVGDEVEVVVLSVDPEKKRISLGMKQVRPNPWDIVAEKYPEGTILEGSVKNITE-- 392

Query: 284 RVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEG 341
                 G+ + I          + +SD++  ++VR   + +K G  V  ++L   +  E 
Sbjct: 393 -----FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKTGDIVMAKVLTVDKENEK 444

Query: 342 LATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
              GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +  +S  
Sbjct: 445 FTLGIKQLS--EDPWTRVPDTYPVGTMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRK 502

Query: 401 EIVKPGKKFKVGAELVFRVLGVKS 424
           ++  P + +K G E+  +V+ V +
Sbjct: 503 KVKTPAELYKEGDEIEAKVIHVSA 526


>gi|76788812|ref|YP_327898.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/HAR-13]
 gi|255310900|ref|ZP_05353470.1| 30S ribosomal protein S1 [Chlamydia trachomatis 6276]
 gi|255317200|ref|ZP_05358446.1| 30S ribosomal protein S1 [Chlamydia trachomatis 6276s]
 gi|376282107|ref|YP_005155933.1| 30S ribosomal protein S1P [Chlamydia trachomatis A2497]
 gi|385239610|ref|YP_005807452.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9768]
 gi|385240530|ref|YP_005808371.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11222]
 gi|385242386|ref|YP_005810225.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9301]
 gi|385245996|ref|YP_005814818.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11074]
 gi|385269750|ref|YP_005812910.1| SSU ribosomal protein S1P [Chlamydia trachomatis A2497]
 gi|76167342|gb|AAX50350.1| SSU ribosomal protein S1P [Chlamydia trachomatis A/HAR-13]
 gi|296435615|gb|ADH17789.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9768]
 gi|296436538|gb|ADH18708.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11222]
 gi|296437475|gb|ADH19636.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11074]
 gi|297139974|gb|ADH96732.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9301]
 gi|347974890|gb|AEP34911.1| SSU ribosomal protein S1P [Chlamydia trachomatis A2497]
 gi|371908137|emb|CAX08757.1| SSU ribosomal protein S1P [Chlamydia trachomatis A2497]
 gi|438690015|emb|CCP49272.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/7249]
 gi|438691099|emb|CCP48373.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/5291]
 gi|438692472|emb|CCP47474.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/363]
 gi|440533044|emb|CCP58554.1| 30S ribosomal protein S1 [Chlamydia trachomatis Ia/SotonIa1]
 gi|440533938|emb|CCP59448.1| 30S ribosomal protein S1 [Chlamydia trachomatis Ia/SotonIa3]
          Length = 569

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K        + E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLTPNPWDEIE----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1425
              IE +   G+KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 517  AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 385
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 386 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 503 KCRIMSSIPASRRINLSF 520
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471



 Score = 40.4 bits (93), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 132/584 (22%), Positives = 226/584 (38%), Gaps = 101/584 (17%)

Query: 536  GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL- 594
            G+++ G V  ++ + VVV V  K  S+G IP     D  E  TV       G E +  L 
Sbjct: 52   GAILKGTVVDISKDFVVVDVGLK--SEGVIPMSEFIDSSEGLTV-------GAEVEVYLD 102

Query: 595  -VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
               D+E   +L   K +     +Q     +H    S+V G +   ++ G  V     +  
Sbjct: 103  QTEDDEGKVVLSREKAT---RQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEA 157

Query: 654  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 713
            F P S+  + +  +L    YVG+     IL +N +   + +S ++               
Sbjct: 158  FLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVDRRNVVVSRRE--------------L 201

Query: 714  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------EHSDVY 767
            L  E+I+         +EL  +E   IG   +G V    DFGV +  +        +D+ 
Sbjct: 202  LEAERIS-------KKAEL--IEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMT 252

Query: 768  GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK--- 824
                 H      VE    ++  IL V K +  V L LK       +E N     +KK   
Sbjct: 253  WKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIEKKYPP 304

Query: 825  -KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQK 879
             KR R              IV+++     +    E    I G   VS+ +  K    P +
Sbjct: 305  GKRVR------------GKIVKLLPYGAFI----EIEEGIEGLIHVSEMSWVKNIVDPNE 348

Query: 880  QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 939
                G  V   V+++      G++ L LK     +T  +     +  Y +G  V AEI  
Sbjct: 349  VVNKGDEVEVVVLSI--QKDEGKISLGLK-----QTKHNPWDNIEEKYPIGLRVTAEIKN 401

Query: 940  IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 999
            +      ++   G  G IHI++++  K   V +    FK G TV A I+  S   + KK 
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNTVEAVIL--SVDKESKKI 457

Query: 1000 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1059
             L    + P+     EI       E    +G  ++G V K+    A + +   ++  + +
Sbjct: 458  TLGVKQLTPNPW--DEI-------EAMFPVGSDISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1103
             + + +P    + +    IG  V+  V+ ++ + K + L ++ F
Sbjct: 509  SELSEKP--FAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEF 550


>gi|417300529|ref|ZP_12087738.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47]
 gi|421613092|ref|ZP_16054184.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH28]
 gi|327543203|gb|EGF29638.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47]
 gi|408496112|gb|EKK00679.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH28]
          Length = 598

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 96/159 (60%), Gaps = 5/159 (3%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V+G V+N+T+ G FI L   +D  + +S++S    +  P +    G+ +  R+LSV+   
Sbjct: 396  VKGKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQR 455

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ + LK  D+      +I +      G +V G++ ++ ++G+FI +E+  L GL H+S
Sbjct: 456  RRIALGLKQLDN-DPWDGDIPD--KYQPGQLVKGEVTKITNFGVFIGLED-GLEGLLHIS 511

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            EL+E  V++ E + + G+ ++VK+L+VD ++R+I L +K
Sbjct: 512  ELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLK 550



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 184/399 (46%), Gaps = 56/399 (14%)

Query: 1023 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1082
            E+ D + G+ V G + ++++EWAL+ +    K++  +    + P E Q       IG  V
Sbjct: 39   EQQDYNSGKIVDGRIVELNDEWALVDVG--FKSEGTVGLDEWGPEEDQP-----KIGDTV 91

Query: 1083 TGHVLSINKEKKLLRLVLRPF-QDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSG 1139
               +  +  E   L     P+    +S +  +  I  + M   + EG +V G + + + G
Sbjct: 92   KVLIEEMEDE---LGAADDPYGMISLSKRKAEKIIEWEAMMETVAEGQVVTGTVIRKIKG 148

Query: 1140 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1199
              GL+V IG ++     F     + +  P    D G F        G+ V+ +VL+I  T
Sbjct: 149  --GLLVDIGVNV-----FLPGSQVDIRRP---GDIGDF-------IGRVVQAEVLKIDDT 191

Query: 1200 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1259
             R   ++ +S RS ++     + + L             +++L    I +G VKN+   G
Sbjct: 192  RR---NIVISRRSLIERQREEDRAYL-------------MQELEVGQIRKGIVKNIADFG 235

Query: 1260 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1319
             F+ L   +D  + +++++   +  P +   I + +  +VL ++   +++ + LK  D  
Sbjct: 236  AFVDLG-GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRN 294

Query: 1320 TASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIE 1377
                 E    + ++H G++V      V SYG F+ +E   + GL H+SE+S    V++  
Sbjct: 295  PWENIETKYPVESVHPGEVV-----NVMSYGAFVKLE-PGIEGLVHISEMSWTKRVNHPS 348

Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
             +   G+K+ V IL VD E +++SLGMK +  KN  D +
Sbjct: 349  ELVNIGDKIDVMILGVDPEGQQLSLGMKQT-LKNPWDEV 386



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 171/469 (36%), Gaps = 71/469 (15%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           V  G VV G VI     G +V    GV    P    S+ +I +PG       + + RV+ 
Sbjct: 132 VAEGQVVTGTVIRKIKGGLLVDI--GVNVFLP---GSQVDIRRPGDI----GDFIGRVVQ 182

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 473
            +  +I  T +  ++  +  I     E    L        I  G +  I   G FV    
Sbjct: 183 AEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDL-G 241

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 533
           G+ G    +++  +    P+ M  + Q ++ +++      ++I L    K     E+   
Sbjct: 242 GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIET 301

Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------G 587
           K        V+ V P  VV  +    + K     E L  H+   +  K V  P      G
Sbjct: 302 KY------PVESVHPGEVVNVMSYGAFVKLEPGIEGLV-HISEMSWTKRVNHPSELVNIG 354

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
            + D  +L +D E   L L  K +L N   ++            V G V N+   G F+ 
Sbjct: 355 DKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV---LERYPEGKDVKGKVRNLTNYGAFIE 411

Query: 647 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
               + G    S     ++ A  S+    GQ +   IL V+ +  RI L LKQ      D
Sbjct: 412 LEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDNDPWD 471

Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
                +                          +  G +++G+V +  +FGV +  E+   
Sbjct: 472 GDIPDK--------------------------YQPGQLVKGEVTKITNFGVFIGLEDG-- 503

Query: 766 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 807
           + G +   +LA   VE        G  I+  +L V   ER + LSLK V
Sbjct: 504 LEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 552



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IG++V   VL ++   + + ++ ++   R   +     +  L VG I  G +K +  +G 
Sbjct: 177  IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 236

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
            F+ +   +  GL H+++++ + + +   +    ++++VK+L +D+EK++I+LG+K    +
Sbjct: 237  FVDLGGID--GLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKD-R 293

Query: 1411 NDADNLQMSSEEES 1424
            N  +N++     ES
Sbjct: 294  NPWENIETKYPVES 307



 Score = 48.5 bits (114), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 167/413 (40%), Gaps = 70/413 (16%)

Query: 55  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 114
           +G++V   VL++DD ++ I   +  L  R     +   ++ ++ G +    VK+I D G 
Sbjct: 177 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 236

Query: 115 ILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 162
            +  G     G L            P   L+ +  I+VK        V  IDR ++ + L
Sbjct: 237 FVDLG--GIDGLLHITDMAWERIGHPTEMLSIDQEIEVK--------VLHIDREKQKIAL 286

Query: 163 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 219
                D +      TK      ++ + PG +V+     ++  G  +       G V I  
Sbjct: 287 GLKQKDRNPWENIETK----YPVESVHPGEVVN-----VMSYGAFVKLEPGIEGLVHISE 337

Query: 220 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSH--- 270
           +  T    +     N   K++  IL VDP  + + L +     NP+  +  R P      
Sbjct: 338 MSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEVLERYPEGKDVK 397

Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEG 326
            KV ++ +    + ++ G+  LL +     +  ++ P+ V            LEK    G
Sbjct: 398 GKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEV------------LEK----G 441

Query: 327 SCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 383
             +  RIL     R    L    L    ++G +      +PG +VKG+V  + +FG  + 
Sbjct: 442 QEIECRILSVDEQRRRIALGLKQLDNDPWDGDI--PDKYQPGQLVKGEVTKITNFGVFIG 499

Query: 384 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 434
              G++ L  +  ++E ++  P +  KVG  +  +VL V +  ++I ++ K+ 
Sbjct: 500 LEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 552


>gi|288920743|ref|ZP_06415044.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
 gi|288347871|gb|EFC82147.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
          Length = 492

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 188/418 (44%), Gaps = 67/418 (16%)

Query: 1010 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1059
             + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   
Sbjct: 23   QVAVNDIGSAEDFLAAVDKTIKFFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELS 82

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
            +    +P E+        +G  V   VL   KE K  RL+L   +        + +   +
Sbjct: 83   IKHDVDPHEV------VSVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTI 129

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +      
Sbjct: 130  EKLKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------ 181

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                     ++ K++E+ +      +V LS R+ L+   S   S+              +
Sbjct: 182  ---------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------L 216

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 217  AQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 275

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 276  LDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRV-DEG 329

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
            + GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   N+A  L
Sbjct: 330  IEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NEASAL 384



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLQKEDKE 110

Query: 514 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 222

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 749 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 804 LK 805
           LK
Sbjct: 375 LK 376



 Score = 46.2 bits (108), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 151/353 (42%), Gaps = 31/353 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 49  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLQKED 108

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 220

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S 
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEASA 383


>gi|359425923|ref|ZP_09217013.1| 30S ribosomal protein S1 [Gordonia amarae NBRC 15530]
 gi|358238782|dbj|GAB06595.1| 30S ribosomal protein S1 [Gordonia amarae NBRC 15530]
          Length = 491

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  V-DEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELAERHVEVPDQVVSVGDDAMV 346

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 48.1 bits (113), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|46581552|ref|YP_012360.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601286|ref|YP_965686.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris DP4]
 gi|387154752|ref|YP_005703688.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris RCH1]
 gi|46450974|gb|AAS97620.1| ribosomal protein S1 [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561515|gb|ABM27259.1| SSU ribosomal protein S1P [Desulfovibrio vulgaris DP4]
 gi|311235196|gb|ADP88050.1| ribosomal protein S1 [Desulfovibrio vulgaris RCH1]
          Length = 577

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 153/349 (43%), Gaps = 34/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G VVKGK   +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQVVKGKAKNITEYGVFVDL-GGLDGLLHITDMSWKRIRHPKELVSLGQELELKVLSFDR 266

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
            S+++++  K+ +      I + + E    L   G +T +  +G FV    GV+G    S
Sbjct: 267 DSQKVSLGMKQLVADPWQDITAKFPEG---LRGQGKVTNLVDYGAFVELEPGVEGLVHIS 323

Query: 483 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL----GS 537
           E+        PS M  VG  V+  I+   P  +RI+L   MK  + +  ++V      G+
Sbjct: 324 EMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLG--MKQVKPNPWEVVAEKYPEGT 381

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 591
           ++ GV+  +T   + +     G   G     H++D     +  K +  P   +       
Sbjct: 382 ILEGVIKNITEFGMFI-----GIEDGIDGLIHVSD----ISWTKKIRHPNEMYKVGDVVQ 432

Query: 592 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 649
            ++L +D E+    L  K    +   ++P+     +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDQENEKFTLGVKQLAEDPWSRVPA----TYPVGTLVTGSVTNITDFGLFVEVEE 488

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            + G    S+    +    S+ Y  GQ +++ ++ V++E  R+ LS+KQ
Sbjct: 489 GIEGLVHVSEISQKKIKSPSEIYKEGQEIQAKVIHVSAEERRLGLSIKQ 537



 Score = 77.0 bits (188), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 90/160 (56%), Gaps = 6/160 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1305
            I++G +KN+T  G FI +   +D  + +S++S    +  P + + +G +V  +VL+V+  
Sbjct: 382  ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNEMYKVGDVVQAKVLTVDQE 441

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
            +++  + +K       S+      +   VG +V G +  +  +GLF+ +E   + GL HV
Sbjct: 442  NEKFTLGVKQLAEDPWSRVP----ATYPVGTLVTGSVTNITDFGLFVEVEE-GIEGLVHV 496

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            SE+S+  + +   IY+ G++++ K++ V  E+RR+ L +K
Sbjct: 497  SEISQKKIKSPSEIYKEGQEIQAKVIHVSAEERRLGLSIK 536



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 7/165 (4%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L    +V+G  KN+T  G F+ L   LD  + ++++S   +  P++   +G+ +  +VLS
Sbjct: 205  LEEGQVVKGKAKNITEYGVFVDLG-GLDGLLHITDMSWKRIRHPKELVSLGQELELKVLS 263

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
             +  S++V + +K    +  +    +  +    G    G++  +  YG F+ +E   + G
Sbjct: 264  FDRDSQKVSLGMK----QLVADPWQDITAKFPEGLRGQGKVTNLVDYGAFVELE-PGVEG 318

Query: 1362 LCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            L H+SE+S    + +   + R G++V+V IL VD +K+RISLGMK
Sbjct: 319  LVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLGMK 363



 Score = 49.3 bits (116), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            L  L  G +V G+ K +  YG+F+ +    L GL H++++S   + + + +   G+++++
Sbjct: 202  LRTLEEGQVVKGKAKNITEYGVFVDL--GGLDGLLHITDMSWKRIRHPKELVSLGQELEL 259

Query: 1389 KILKVDKEKRRISLGMK 1405
            K+L  D++ +++SLGMK
Sbjct: 260  KVLSFDRDSQKVSLGMK 276


>gi|405981074|ref|ZP_11039403.1| 30S ribosomal protein S1 [Actinomyces neuii BVS029A5]
 gi|404393093|gb|EJZ88150.1| 30S ribosomal protein S1 [Actinomyces neuii BVS029A5]
          Length = 490

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 140/292 (47%), Gaps = 43/292 (14%)

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
            +++    E  +V G + +++ G  GL+V IG   +      E++ +    P  G +    
Sbjct: 116  SIEKIKQEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 169

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHL 1236
                       ++ K++E+ +      +V LS R+ L+   S   SS L T         
Sbjct: 170  -----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSSFLQT--------- 206

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
                 L    I  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V 
Sbjct: 207  -----LQKGQIRNGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVT 260

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1355
              VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E
Sbjct: 261  VEVLDVDMDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVE 315

Query: 1356 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  + GL H+SEL+  HVD  + + + GE++ VK++ +D ++RRISL +K +
Sbjct: 316  D-GIEGLVHISELAVRHVDLPDQVVKVGEEIFVKVIDIDLDRRRISLSLKQA 366



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G +  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   VL 
Sbjct: 207 LQKGQIRNGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLD 265

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 266 VDMDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 322

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +     P  +  VG+ +  +++      RRI+LS 
Sbjct: 323 HISELAVRHVDLPDQVVKVGEEIFVKVIDIDLDRRRISLSL 363



 Score = 44.7 bits (104), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 34/220 (15%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           +++ LD   +N++LS +  L  +  ++ S     +    + +G V +I+  G FV  LG 
Sbjct: 173 KIIELDKNRNNVVLSRRAWLEQTQSEVRSSFLQTLQKGQIRNGVVSSIVNFGAFVD-LGG 231

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+         S+   VGQ V   +LDV+ +  R++LSLK +      A F +
Sbjct: 232 VDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQA-FAR 290

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
            H                           IG V+ GKV +   FG  V  E+  +    I
Sbjct: 291 TH--------------------------AIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHI 324

Query: 771 T-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
           +     H  L    V+ G  I   ++D+    R + LSLK
Sbjct: 325 SELAVRHVDLPDQVVKVGEEIFVKVIDIDLDRRRISLSLK 364



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 31/259 (11%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM---- 507
           +  G + ++ K G  V    G++GF P S  E+      +P    +VG+ ++ +I+    
Sbjct: 126 VVTGTVIEVVKGGLIVDI--GLRGFLPASLVEMRRVRDLQP----YVGREIEAKIIELDK 179

Query: 508 --SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 565
             +++  SRR  L       R S    ++ G + +GVV  +      V +   G   G +
Sbjct: 180 NRNNVVLSRRAWLEQTQSEVRSSFLQTLQKGQIRNGVVSSIVNFGAFVDL---GGVDGLV 236

Query: 566 PTEHLA-DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-S 623
               L+  H++H + +  V +P     ++L +D +   + LS K     + Q+ P  A +
Sbjct: 237 HVSELSWKHIDHPSEVVEVGQPVTV--EVLDVDMDRERVSLSLK-----ATQEDPWQAFA 289

Query: 624 HIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADL-SKTYYVGQSVRS 680
             H    VV G V  ++  G FVR    + G    S+ AV  +  DL  +   VG+ +  
Sbjct: 290 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAV--RHVDLPDQVVKVGEEIFV 347

Query: 681 NILDVNSETGRITLSLKQS 699
            ++D++ +  RI+LSLKQ+
Sbjct: 348 KVIDIDLDRRRISLSLKQA 366


>gi|38233738|ref|NP_939505.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae NCTC 13129]
 gi|419860721|ref|ZP_14383362.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae bv. intermedius
            str. NCTC 5011]
 gi|38199999|emb|CAE49668.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae]
 gi|387983115|gb|EIK56614.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae bv. intermedius
            str. NCTC 5011]
          Length = 486

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 138

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +   DP  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLDPYIG---------------QQIEAKIIELDKQRN---N 180

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 282  WRVFARTHAVGQIVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGD 340

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +  VK++ +D E+RRISL +K +
Sbjct: 341  EAMVKVIDIDLERRRISLSLKQA 363



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGRVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 360



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGRVTKLVPFGAFVR 310

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|452959839|gb|EME65170.1| 30S ribosomal protein S1 [Amycolatopsis decaplanina DSM 44594]
          Length = 499

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 185/411 (45%), Gaps = 64/411 (15%)

Query: 1008 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1057
            P  + +++IGS+  F    D +I     G  V G + KVD +  LL I       + ++ 
Sbjct: 15   PQQVAINDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRE 74

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +P+E+        +G  V   VL   KE K  RL+L   +        + +  
Sbjct: 75   LSIKHDVDPAEV------VTVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWG 121

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 122  TIEELKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 175

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   S+             
Sbjct: 176  -----------LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF------------ 209

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L+   + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 210  -LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 267

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E 
Sbjct: 268  EVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE 322

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+E HV+  E + +    V VK++ +D E+RRISL +K +
Sbjct: 323  -GIEGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQA 372



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 52/369 (14%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 41  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQK 100

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 101 EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP 156

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 157 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 212

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 213 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 271

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 272 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 304

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAILDVAKA 796
            GKV +   FG  V  EE   + G +   +LA   VE        +G V+   ++D+   
Sbjct: 305 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEIPEQVVQVNGDVM-VKVIDIDLE 361

Query: 797 ERLVDLSLK 805
            R + LSLK
Sbjct: 362 RRRISLSLK 370



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 31/353 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKED 102

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
            G    S+  +       +   V   V   ++D++ E  RI+LSLKQ+    T
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVT 377


>gi|302336104|ref|YP_003801311.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
 gi|301319944|gb|ADK68431.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
          Length = 392

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 178/385 (46%), Gaps = 52/385 (13%)

Query: 1025 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1084
             D   G  VTG V K++++  LL I    K++  I   + E S  ++      +    T 
Sbjct: 29   TDFDEGDLVTGTVVKIEHDEVLLDIG--FKSEGVI--PSRELSIRKDVNPEEVVALGDTI 84

Query: 1085 HVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1142
              L + KE K  RL+L       S K  +     + ++   + G+ V G + +++ G  G
Sbjct: 85   EALVLQKEDKEGRLIL-------SKKRAEYERAWNRVEEKFNAGENVEGEVIEVVKG--G 135

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
            L++ IG  L G +            P S  D  +   L+ Y  G  ++ +V+E+ R    
Sbjct: 136  LILDIG--LRGFL------------PASLVDLRRVKDLNAY-MGTRIEARVIEMDRN--- 177

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
              +V LS R  L+       S++             +  L P M ++G V ++   G F+
Sbjct: 178  RNNVVLSRRVVLEEARKAERSEI-------------LSKLQPGMRLKGTVSSIVDFGAFV 224

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
             L   +D  + +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK    +T  
Sbjct: 225  DLG-GIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK----QTTE 279

Query: 1323 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1382
                  +    VG IV G + ++ ++G F+ +    + GL H+SE+++ HVD    +   
Sbjct: 280  DPWRTLVKKYPVGAIVEGSVTKLVTFGAFVDL-GDGVEGLVHISEMAKQHVDAPAQVCAV 338

Query: 1383 GEKVKVKILKVDKEKRRISLGMKSS 1407
            G+ V+VK++++D ++RRISL MK++
Sbjct: 339  GDTVQVKVMEIDLDRRRISLSMKAA 363



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S ++PGM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +V
Sbjct: 202 SKLQPGMRLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQV 260

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +RI++  K+T       ++  Y       I  G +TK+   G FV   +GV+G
Sbjct: 261 LDVDLNRERISLGLKQTTEDPWRTLVKKYPVGA---IVEGSVTKLVTFGAFVDLGDGVEG 317

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SE+       P+ +  VG  V+ ++M      RRI+LS 
Sbjct: 318 LVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDRRRISLSM 360



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 144/369 (39%), Gaps = 58/369 (15%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G + KIE     +      +G  P  EL +     P  +  +G  ++  ++      
Sbjct: 36  LVTGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDVNPEEVVALGDTIEALVLQKEDKE 95

Query: 514 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
            R+ LS     +     RV E      G  V G V  V    +++ +  +G+   ++   
Sbjct: 96  GRLILSKKRAEYERAWNRVEEK--FNAGENVEGEVIEVVKGGLILDIGLRGFLPASLVDL 153

Query: 569 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 627
                L     M + I+      +++ +D   +N++LS +  L  + +   S+  S + P
Sbjct: 154 RRVKDLN--AYMGTRIEA-----RVIEMDRNRNNVVLSRRVVLEEARKAERSEILSKLQP 206

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
              + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+ 
Sbjct: 207 GMRLKGTVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDL 265

Query: 688 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 744
              RI+L LKQ+                              +E  W   V+ + +G+++
Sbjct: 266 NRERISLGLKQT------------------------------TEDPWRTLVKKYPVGAIV 295

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAE 797
           EG V +   FG  V   +   V G +   ++A   V++       G  +Q  ++++    
Sbjct: 296 EGSVTKLVTFGAFVDLGDG--VEGLVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDR 353

Query: 798 RLVDLSLKT 806
           R + LS+K 
Sbjct: 354 RRISLSMKA 362


>gi|430743122|ref|YP_007202251.1| 30S ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
 gi|430014842|gb|AGA26556.1| ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
          Length = 632

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 100/167 (59%), Gaps = 5/167 (2%)

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSV 1302
            P  +++G V+N+T+ G FI +   +D  + +S++S    +  P +    G+ ++ +VL+V
Sbjct: 381  PGTMIEGTVRNLTNYGAFIEIEEGIDGLLHISDMSWTRKIGHPNELLEKGQRLSCQVLNV 440

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1362
            +   KR+ + LK        +++I N       D+V G++ ++ ++G+F+ +E   L GL
Sbjct: 441  DQERKRIALGLKQL-REDPWETDIPN--RYEPNDVVKGKVTKLTNFGVFVELE-PGLEGL 496

Query: 1363 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
             H+SEL++  VD+ E + + G+ ++VKIL+VD+ +R+I L  K +++
Sbjct: 497  LHISELADHKVDSPEEVVKVGDDIEVKILRVDRGERKIGLSRKKAHW 543



 Score = 79.0 bits (193), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 139/285 (48%), Gaps = 40/285 (14%)

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
            HEGD+V G++++ +   GGL+V IG +++               P S  D  +   ++ Y
Sbjct: 122  HEGDVVKGKVTRKIK--GGLLVDIGVNVFL--------------PASQVDIRRPSDIADY 165

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
             + + ++C +L+I     G  ++ +S R  ++         L             + ++ 
Sbjct: 166  IDSE-IECMILKID---EGRRNIVVSRRKLIEITREQQKKQL-------------LAEIE 208

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
            P  +  G VKN+   G F+ L   +D  + ++++S G +  P     I   +   VL V+
Sbjct: 209  PGQVRMGTVKNIADFGAFVDLG-GIDGLLHITDMSWGRINHPSDMVKIDDQIEVMVLHVD 267

Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
               +++ + LK    ++AS  E N      VG  V+G++  V SYG F+ +E   + GL 
Sbjct: 268  KDREKIALGLK---QKSASPWE-NVADKYPVGTRVMGEVVNVMSYGAFVKLEE-GIEGLV 322

Query: 1364 HVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            H+SE+S    +++   + +  +K++V +L ++KEK+ ISLGMK +
Sbjct: 323  HISEMSWTKRINHPSELVQISDKIEVVVLGINKEKQEISLGMKQT 367



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 177/461 (38%), Gaps = 66/461 (14%)

Query: 274 GDIYDQSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS 327
           GD+  + KV R  +G GLL+DI      P++ V       I+D  + E+  +  K  EG 
Sbjct: 124 GDVV-KGKVTRKIKG-GLLVDIGVNVFLPASQVDIRRPSDIADYIDSEIECMILKIDEGR 181

Query: 328 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 387
             R  ++  R L  +     K           ++++PG V  G V  +  FGA V   GG
Sbjct: 182 --RNIVVSRRKLIEITREQQKKQLL-------AEIEPGQVRMGTVKNIADFGAFVDL-GG 231

Query: 388 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSS 445
           +  L  +  MS   I  P    K+  ++   VL V   R  I +  K+        +   
Sbjct: 232 IDGLLHITDMSWGRINHPSDMVKIDDQIEVMVLHVDKDREKIALGLKQKSASPWENVADK 291

Query: 446 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE-PSSMYHVGQVVKC 504
           Y   T R++  G +  +  +G FV+   G++G    SE+        PS +  +   ++ 
Sbjct: 292 YPVGT-RVM--GEVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRINHPSELVQISDKIEV 348

Query: 505 RIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGY 560
            ++      + I+L   MK T+ +  D V      G+++ G V  +T     + +     
Sbjct: 349 VVLGINKEKQEISLG--MKQTQTNPWDQVAGKYPPGTMIEGTVRNLTNYGAFIEI----- 401

Query: 561 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD----------QLLVLDNESSNLLLSAKYS 610
                  E   D L H + M    K G+  +          Q+L +D E   + L  K  
Sbjct: 402 -------EEGIDGLLHISDMSWTRKIGHPNELLEKGQRLSCQVLNVDQERKRIALGLK-- 452

Query: 611 LINSAQQLPSDA------SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
                 QL  D       +   PN VV G V  +   G FV     L G    S+  D +
Sbjct: 453 ------QLREDPWETDIPNRYEPNDVVKGKVTKLTNFGVFVELEPGLEGLLHISELADHK 506

Query: 665 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
                +   VG  +   IL V+    +I LS K++  +  D
Sbjct: 507 VDSPEEVVKVGDDIEVKILRVDRGERKIGLSRKKAHWTKGD 547



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 107/478 (22%), Positives = 187/478 (39%), Gaps = 99/478 (20%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK-VGAELVFRVLGVK 423
           G VVKGKV      G +V    GV    P    S+ +I +P      + +E+   +L + 
Sbjct: 124 GDVVKGKVTRKIKGGLLVDI--GVNVFLP---ASQVDIRRPSDIADYIDSEIECMILKID 178

Query: 424 SKR--ITVTHKK----TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
             R  I V+ +K    T  + K  +L+       R+   G +  I   G FV    G+ G
Sbjct: 179 EGRRNIVVSRRKLIEITREQQKKQLLAEIEPGQVRM---GTVKNIADFGAFVDL-GGIDG 234

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 535
               +++       PS M  +   ++  ++       +I L    K     E+  D   +
Sbjct: 235 LLHITDMSWGRINHPSDMVKIDDQIEVMVLHVDKDREKIALGLKQKSASPWENVADKYPV 294

Query: 536 GSLVSG-VVDVVTPNAVV---------VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 585
           G+ V G VV+V++  A V         V++    ++K      H ++ ++ +  ++ V+ 
Sbjct: 295 GTRVMGEVVNVMSYGAFVKLEEGIEGLVHISEMSWTK---RINHPSELVQISDKIEVVV- 350

Query: 586 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
                   L ++ E   + L  K +  N   Q+   A    P +++ G V N+   G F+
Sbjct: 351 --------LGINKEKQEISLGMKQTQTNPWDQV---AGKYPPGTMIEGTVRNLTNYGAFI 399

Query: 646 RFLGRLTGFAPRSKAVDG--QRADLSKTYYVG---------QSVRSNILDVNSETGRITL 694
                        + +DG    +D+S T  +G         Q +   +L+V+ E  RI L
Sbjct: 400 EI----------EEGIDGLLHISDMSWTRKIGHPNELLEKGQRLSCQVLNVDQERKRIAL 449

Query: 695 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 754
            LKQ               L E+       +++  ++           V++GKV +  +F
Sbjct: 450 GLKQ---------------LREDPWETDIPNRYEPND-----------VVKGKVTKLTNF 483

Query: 755 GVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 805
           GV V  E    + G +   +LA   V+S       G  I+  IL V + ER + LS K
Sbjct: 484 GVFVELE--PGLEGLLHISELADHKVDSPEEVVKVGDDIEVKILRVDRGERKIGLSRK 539



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 79/143 (55%), Gaps = 15/143 (10%)

Query: 1275 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1334
            S+++D Y++S E E  I K+  GR   V    K +E+T          Q +   L+ +  
Sbjct: 160  SDIAD-YIDS-EIECMILKIDEGRRNIVVSRRKLIEIT--------REQQKKQLLAEIEP 209

Query: 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1394
            G + +G +K +  +G F+ +   +  GL H++++S   +++   + +  ++++V +L VD
Sbjct: 210  GQVRMGTVKNIADFGAFVDLGGID--GLLHITDMSWGRINHPSDMVKIDDQIEVMVLHVD 267

Query: 1395 KEKRRISLGMK---SSYFKNDAD 1414
            K++ +I+LG+K   +S ++N AD
Sbjct: 268  KDREKIALGLKQKSASPWENVAD 290


>gi|375293001|ref|YP_005127540.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae INCA 402]
 gi|376293166|ref|YP_005164840.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC02]
 gi|371582672|gb|AEX46338.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae INCA 402]
 gi|372110489|gb|AEX76549.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC02]
          Length = 513

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 61   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 114

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 115  VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 165

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +   DP  G               Q ++ K++E+ +      +
Sbjct: 166  DIGLRGFLPASLVEMRRVRDLDPYIG---------------QQIEAKIIELDKQRN---N 207

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 208  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 254

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 255  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 308

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 309  WRVFARTHAVGQIVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGD 367

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +  VK++ +D E+RRISL +K +
Sbjct: 368  EAMVKVIDIDLERRRISLSLKQA 390



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 227 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 284

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 285 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGRVTKLVPFGAFVRVEEG 341

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 342 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 387



 Score = 48.5 bits (114), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 61  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 120

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 121 KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 176

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 177 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 228

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 229 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 282

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 283 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGRVTKLVPFGAFVR 337

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 338 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 392

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 393 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 432


>gi|375290806|ref|YP_005125346.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 241]
 gi|376242739|ref|YP_005133591.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae CDCE 8392]
 gi|376245637|ref|YP_005135876.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC01]
 gi|376248430|ref|YP_005140374.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC04]
 gi|376251220|ref|YP_005138101.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC03]
 gi|376254226|ref|YP_005142685.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae PW8]
 gi|376257038|ref|YP_005144929.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae VA01]
 gi|376287654|ref|YP_005160220.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae BH8]
 gi|376290348|ref|YP_005162595.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae C7 (beta)]
 gi|371580477|gb|AEX44144.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 241]
 gi|371584988|gb|AEX48653.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae BH8]
 gi|372103744|gb|AEX67341.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae C7 (beta)]
 gi|372105981|gb|AEX72043.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae CDCE 8392]
 gi|372108267|gb|AEX74328.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC01]
 gi|372112724|gb|AEX78783.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC03]
 gi|372114998|gb|AEX81056.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC04]
 gi|372117310|gb|AEX69780.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae PW8]
 gi|372119555|gb|AEX83289.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae VA01]
          Length = 513

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 61   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 114

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 115  VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 165

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +   DP  G               Q ++ K++E+ +      +
Sbjct: 166  DIGLRGFLPASLVEMRRVRDLDPYIG---------------QQIEAKIIELDKQRN---N 207

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 208  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 254

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 255  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 308

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 309  WRVFARTHAVGQIVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGD 367

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +  VK++ +D E+RRISL +K +
Sbjct: 368  EAMVKVIDIDLERRRISLSLKQA 390



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 227 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 284

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 285 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGRVTKLVPFGAFVRVEEG 341

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 342 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 387



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 61  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 120

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 121 KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 176

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 177 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 228

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 229 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 282

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 283 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGRVTKLVPFGAFVR 337

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 338 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 392

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 393 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 432


>gi|119962586|ref|YP_947812.1| 30S ribosomal protein S1 [Arthrobacter aurescens TC1]
 gi|403527278|ref|YP_006662165.1| 30S ribosomal protein S1 [Arthrobacter sp. Rue61a]
 gi|119949445|gb|ABM08356.1| ribosomal protein S1 [Arthrobacter aurescens TC1]
 gi|403229705|gb|AFR29127.1| 30S ribosomal protein S1 [Arthrobacter sp. Rue61a]
          Length = 491

 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 1010 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1059
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VAVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVAVGDQVEALVLTKE 97

Query: 511 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 625
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 800
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 801 DLSLK 805
            LSLK
Sbjct: 362 SLSLK 366



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
           EL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVAVGDQVEALVLTKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|116670612|ref|YP_831545.1| 30S ribosomal protein S1 [Arthrobacter sp. FB24]
 gi|116610721|gb|ABK03445.1| SSU ribosomal protein S1P [Arthrobacter sp. FB24]
          Length = 491

 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 1010 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1059
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKE 97

Query: 511 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 625
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 800
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 801 DLSLK 805
            LSLK
Sbjct: 362 SLSLK 366



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
           EL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|325963167|ref|YP_004241073.1| 30S ribosomal protein S1 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469254|gb|ADX72939.1| SSU ribosomal protein S1P [Arthrobacter phenanthrenivorans Sphe3]
          Length = 492

 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 1010 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1059
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LEKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLE 267

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDLDRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
             SEL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 325 HISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKE 97

Query: 511 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 625
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 800
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 801 DLSLK 805
            LSLK
Sbjct: 362 SLSLK 366



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|451336997|ref|ZP_21907548.1| SSU ribosomal protein S1p [Amycolatopsis azurea DSM 43854]
 gi|449420339|gb|EMD25826.1| SSU ribosomal protein S1p [Amycolatopsis azurea DSM 43854]
          Length = 499

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 185/411 (45%), Gaps = 64/411 (15%)

Query: 1008 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1057
            P  + +++IGS+  F    D +I     G  V G + KVD +  LL I       + ++ 
Sbjct: 15   PQQVAINDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRE 74

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +P+E+        +G  V   VL   KE K  RL+L   +        + +  
Sbjct: 75   LSIKHDVDPAEV------VTVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWG 121

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 122  TIEELKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 175

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   S+             
Sbjct: 176  -----------LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF------------ 209

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L+   + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 210  -LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 267

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E 
Sbjct: 268  EVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE 322

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL+E HV+  E + +    V VK++ +D E+RRISL +K +
Sbjct: 323  -GIEGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQA 372



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 52/369 (14%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 41  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQK 100

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 101 EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP 156

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 157 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 212

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 213 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 271

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 272 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 304

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAILDVAKA 796
            GKV +   FG  V  EE   + G +   +LA   VE        +G V+   ++D+   
Sbjct: 305 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEIPEQVVQVNGDVM-VKVIDIDLE 361

Query: 797 ERLVDLSLK 805
            R + LSLK
Sbjct: 362 RRRISLSLK 370



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 31/353 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKED 102

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
            G    S+  +       +   V   V   ++D++ E  RI+LSLKQ+    T
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVT 377


>gi|376284650|ref|YP_005157860.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 31A]
 gi|371578165|gb|AEX41833.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 31A]
          Length = 506

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 54   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 107

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 108  VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 158

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +   DP  G               Q ++ K++E+ +      +
Sbjct: 159  DIGLRGFLPASLVEMRRVRDLDPYIG---------------QQIEAKIIELDKQRN---N 200

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 201  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 247

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 248  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 301

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 302  WRVFARTHAVGQIVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGD 360

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +  VK++ +D E+RRISL +K +
Sbjct: 361  EAMVKVIDIDLERRRISLSLKQA 383



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 220 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 277

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 278 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGRVTKLVPFGAFVRVEEG 334

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 335 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 380



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 54  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 113

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 114 KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 169

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 170 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 221

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 222 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 275

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 646
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 276 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGRVTKLVPFGAFVR 330

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 331 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 385

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 386 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 425


>gi|359778625|ref|ZP_09281888.1| 30S ribosomal protein S1 [Arthrobacter globiformis NBRC 12137]
 gi|359304084|dbj|GAB15717.1| 30S ribosomal protein S1 [Arthrobacter globiformis NBRC 12137]
          Length = 491

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 1010 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1059
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFAGTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFAGTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
           EL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 146/365 (40%), Gaps = 46/365 (12%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKE 97

Query: 511 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 625
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
           + +  R++LSLK +       +F   H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFAGTHAL--------------------------GQVVP 301

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 800
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 801 DLSLK 805
            LSLK
Sbjct: 362 SLSLK 366



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  Q     A       VV G V  ++  G FVR    + 
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF---AGTHALGQVVPGKVTKLVPFGAFVRVEDGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|220912560|ref|YP_002487869.1| 30S ribosomal protein S1 [Arthrobacter chlorophenolicus A6]
 gi|219859438|gb|ACL39780.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
          Length = 491

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 191/420 (45%), Gaps = 64/420 (15%)

Query: 1010 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1059
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LEKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLE 267

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDLDRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
             SEL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 325 HISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKE 97

Query: 511 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 625
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 800
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 801 DLSLK 805
            LSLK
Sbjct: 362 SLSLK 366



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|308177716|ref|YP_003917122.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117]
 gi|307745179|emb|CBT76151.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117]
          Length = 491

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 188/409 (45%), Gaps = 64/409 (15%)

Query: 1010 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1059
            ++ +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   
Sbjct: 13   VVAINDIGSAEDFLAAVDATIKYFNDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELS 72

Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1119
            +    +P E+        +G +V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGEV------VTVGDSVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1120 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDP 1179
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G        
Sbjct: 120  EKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG-------- 169

Query: 1180 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1239
                   Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+
Sbjct: 170  -------QEIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKL 209

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            E      +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 210  E---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  
Sbjct: 266  LEVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-G 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 146/365 (40%), Gaps = 46/365 (12%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  +  G + K++     +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDSVEALVLTKE 97

Query: 511 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKIKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 625
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 800
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 801 DLSLK 805
            LSLK
Sbjct: 362 SLSLK 366



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           EL +        +  VG  +  +++      RRI+LS 
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSL 365



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG+   VG  +   VL  + 
Sbjct: 39  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDSVEALVLTKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|269956314|ref|YP_003326103.1| RNA binding S1 domain-containing protein [Xylanimonas cellulosilytica
            DSM 15894]
 gi|269304995|gb|ACZ30545.1| RNA binding S1 domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 490

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 186/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IG+ + L    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 12   VAINDIGTAEDLLAAIDATIKNFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 71

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +PSE+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 72   KHDVDPSEV------VSLGDVVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 118

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 119  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 169

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+    T S   ST + T         
Sbjct: 170  --------IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT--------- 206

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 207  -LQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 264

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  +
Sbjct: 265  DVDFDRERVSLSLKAT-----QEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED-GI 318

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+  HV+  E +   G++V VK++ +D E+RRISL +K +
Sbjct: 319  EGLVHISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQA 366



 Score = 57.4 bits (137), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 207 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 265

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 266 VDFDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 322

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +     P  +  VGQ V  +++      RRI+LS 
Sbjct: 323 HISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSL 363



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   +G  +   VL  + 
Sbjct: 37  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSLGDVVEALVLQKED 96

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 153 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 208

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 209 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 262

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 263 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 318

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VGQ V   ++D++ E  RI+LSLKQ+
Sbjct: 319 EGLVHISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQA 366


>gi|348171102|ref|ZP_08877996.1| 30S ribosomal protein S1 [Saccharopolyspora spinosa NRRL 18395]
          Length = 499

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 129/268 (48%), Gaps = 39/268 (14%)

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            GGL++ IG   +      E++ +    P  G +               ++ K++E+ +  
Sbjct: 143  GGLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNR 187

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                +V LS R+ L+   S   S+              +  L    + +G V ++ + G 
Sbjct: 188  N---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKGQVRKGVVSSIVNFGA 231

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +    
Sbjct: 232  FVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDP 290

Query: 1321 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
              Q      +  H +G IV G++ ++  +G F+ + +  + GL H+SEL+E HV+  E +
Sbjct: 291  WRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQV 344

Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             + G++V +K++ +D E+RRISL +K +
Sbjct: 345  VQVGDEVMIKVIDIDLERRRISLSLKQA 372



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 146/366 (39%), Gaps = 46/366 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 41  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQK 100

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 101 EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGF----LP 156

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 157 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 212

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 213 LQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 271

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 272 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 304

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  +E  +    I+     H ++    V+ G  +   ++D+    R 
Sbjct: 305 PGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEVMIKVIDIDLERRR 364

Query: 800 VDLSLK 805
           + LSLK
Sbjct: 365 ISLSLK 370



 Score = 48.1 bits (113), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQKED 102

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 214

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 324

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 708
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    S D+ F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVGDEVMIKVIDIDLERRRISLSLKQANEGFSPDSEF 382


>gi|384566732|ref|ZP_10013836.1| ribosomal protein S1 [Saccharomonospora glauca K62]
 gi|384522586|gb|EIE99781.1| ribosomal protein S1 [Saccharomonospora glauca K62]
          Length = 491

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 41   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDEVEAL 94

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 95   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVRGTVIEVVKG--GLIL 145

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 146  DIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKN---RNN 187

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L+   + +G V ++ + G F+ L 
Sbjct: 188  VVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG 234

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q  
Sbjct: 235  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-- 291

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G 
Sbjct: 292  ---FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGG 347

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +V VK++ +D E+RRISL +K +
Sbjct: 348  EVMVKVIDIDLERRRISLSLKQA 370



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 156/393 (39%), Gaps = 46/393 (11%)

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           ++K++ V    T      AI  +     D  I  G I K+++    +      +G  P  
Sbjct: 12  QAKQVAVNDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSR 71

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLV 539
           EL +    +P+ +  VG  V+  ++       R+ LS      +    + ++L +    V
Sbjct: 72  ELSIKHDVDPAEVVAVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPV 131

Query: 540 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDN 598
            G V  V    +++ +  +G+    +P    A  +E   V       G E + +++ LD 
Sbjct: 132 RGTVIEVVKGGLILDIGLRGF----LP----ASLVEMRRVRDLQPYVGRELEAKIIELDK 183

Query: 599 ESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 657
             +N++LS +  L  +  ++ S+  + +    V  G V +I+  G FV  LG + G    
Sbjct: 184 NRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHV 242

Query: 658 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 717
           S+         S+   VGQ V   +LDV+ +  R++LSLK +        F + H     
Sbjct: 243 SELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----- 296

Query: 718 KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----H 772
                                 IG ++ GKV +   FG  V  EE  +    I+     H
Sbjct: 297 ---------------------AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERH 335

Query: 773 HQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
            ++    V+ G  +   ++D+    R + LSLK
Sbjct: 336 VEIPEQVVQVGGEVMVKVIDIDLERRRISLSLK 368



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKED 100

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 708
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    S DA F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGYSPDAEF 380


>gi|377567051|ref|ZP_09796296.1| 30S ribosomal protein S1 [Gordonia sputi NBRC 100414]
 gi|377525785|dbj|GAB41461.1| 30S ribosomal protein S1 [Gordonia sputi NBRC 100414]
          Length = 489

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VDD-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  ++   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDDG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDDGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|377809630|ref|YP_005004851.1| 30S ribosomal protein S1 [Pediococcus claussenii ATCC BAA-344]
 gi|361056371|gb|AEV95175.1| 30S ribosomal protein S1 [Pediococcus claussenii ATCC BAA-344]
          Length = 405

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 40/305 (13%)

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            GGLVV  G  + G +  + ++N  V++            LS Y EG+ +K K++EI  T 
Sbjct: 130  GGLVVDAG--VRGFIPASMIENRFVNN------------LSAY-EGKTLKVKIIEIDAT- 173

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                 + LS +  L+              +   K  E +  +    IV+G V  +T+ G 
Sbjct: 174  --KNRLILSHKDVLNE-------------ERAAKREEVLNSIHEGDIVEGKVARLTNFGA 218

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            FI L   +D  V +S +S   V  PE    +G+ V  +VLSV+P   R+ +++K + +  
Sbjct: 219  FIDLG-GMDGLVHISEISYERVNKPEDVLKVGEDVKVKVLSVDPERNRISLSIKQTLAGP 277

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
                E    +   VG ++ G++KR+  +G F+ +    + GL H+S++S  H+     + 
Sbjct: 278  WDDIE----TKAPVGAVLDGKVKRLTDFGAFVEV-FPGVEGLVHISQISHKHIATPGDVL 332

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE---SDEAIEEVGSYNRS 1437
            ++GE VKVK+L V  E+ R++L +K+       DN   S+ E    +++A EE   +   
Sbjct: 333  KSGEDVKVKVLDVRPEEHRLALSIKALEEAPKGDNTSSSNNESVNIANDAPEEESGFTLG 392

Query: 1438 SLLEN 1442
             L+ N
Sbjct: 393  DLIGN 397



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +  G +V+GKV  + +FGA +   GG+  L  +  +S   + KP    KVG ++  +VL 
Sbjct: 200 IHEGDIVEGKVARLTNFGAFIDL-GGMDGLVHISEISYERVNKPEDVLKVGEDVKVKVLS 258

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V  +  RI+++ K+TL      I     +A    +  G + ++   G FV  + GV+G  
Sbjct: 259 VDPERNRISLSIKQTLAGPWDDI---ETKAPVGAVLDGKVKRLTDFGAFVEVFPGVEGLV 315

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             S++       P  +   G+ VK +++   P   R+ LS 
Sbjct: 316 HISQISHKHIATPGDVLKSGEDVKVKVLDVRPEEHRLALSI 356



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 139/356 (39%), Gaps = 67/356 (18%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP----------ASRRINLSFMMK 523
           GV+G  P  EL      + + +  +G  ++  ++S I           + +R+    + K
Sbjct: 49  GVEGVVPLRELSNKHIDDINEVAKIGDELELVVISKIGNDKEGGSYLLSKKRLEAQAIWK 108

Query: 524 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 583
             +  ED+   L   V+ VV       +VV    +G+   ++      ++L         
Sbjct: 109 DIQAKEDNNETLEVPVTQVV----KGGLVVDAGVRGFIPASMIENRFVNNL--------- 155

Query: 584 IKPGYEFDQLLV----LDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNI 638
               YE   L V    +D   + L+LS K  L    A +     + IH   +V G V  +
Sbjct: 156 --SAYEGKTLKVKIIEIDATKNRLILSHKDVLNEERAAKREEVLNSIHEGDIVEGKVARL 213

Query: 639 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
              G F+  LG + G    S+    +         VG+ V+  +L V+ E  RI+LS+KQ
Sbjct: 214 TNFGAFID-LGGMDGLVHISEISYERVNKPEDVLKVGEDVKVKVLSVDPERNRISLSIKQ 272

Query: 699 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 758
           +     D         +E K                     +G+V++GKV    DFG  V
Sbjct: 273 TLAGPWDD--------IETKAP-------------------VGAVLDGKVKRLTDFGAFV 305

Query: 759 SFEEHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 807
             E    V G      I+H  +A  G  ++SG  ++  +LDV   E  + LS+K +
Sbjct: 306 --EVFPGVEGLVHISQISHKHIATPGDVLKSGEDVKVKVLDVRPEEHRLALSIKAL 359



 Score = 47.0 bits (110), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 17/197 (8%)

Query: 235 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGL 289
           + K +  +I+ +D T   + L+    L   RA       + +  GDI  + KV R+    
Sbjct: 159 EGKTLKVKIIEIDATKNRLILSHKDVLNEERAAKREEVLNSIHEGDIV-EGKVARL-TNF 216

Query: 290 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGI 346
           G  +D+          V IS+++ E V K E   K G  V+V++L     R+   L+   
Sbjct: 217 GAFIDLGGMD----GLVHISEISYERVNKPEDVLKVGEDVKVKVLSVDPERNRISLSIKQ 272

Query: 347 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 406
             A  ++ +    +    G V+ GKV  +  FGA V+   GV+ L  +  +S   I  PG
Sbjct: 273 TLAGPWDDI---ETKAPVGAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPG 329

Query: 407 KKFKVGAELVFRVLGVK 423
              K G ++  +VL V+
Sbjct: 330 DVLKSGEDVKVKVLDVR 346



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 42/216 (19%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            IHEGDIV G+++++ +   G  + +G  + G VH +E+    V+ P         D L  
Sbjct: 200  IHEGDIVEGKVARLTN--FGAFIDLG-GMDGLVHISEISYERVNKP--------EDVLK- 247

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
               G+ VK KVL +         + LS++ +L G                    + IE  
Sbjct: 248  --VGEDVKVKVLSVDPE---RNRISLSIKQTLAG------------------PWDDIETK 284

Query: 1243 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            +P   ++ G VK +T  G F+ +   ++  V +S +S  ++ +P      G+ V  +VL 
Sbjct: 285  APVGAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPGDVLKSGEDVKVKVLD 344

Query: 1302 VEPLSKRVEVTLKT------SDSRTASQSEINNLSN 1331
            V P   R+ +++K        D+ ++S +E  N++N
Sbjct: 345  VRPEEHRLALSIKALEEAPKGDNTSSSNNESVNIAN 380



 Score = 43.9 bits (102), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 147/350 (42%), Gaps = 24/350 (6%)

Query: 360 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAEL-- 415
            DV+ G VV G+V+ +D S   IV   G GV+ + PL  +S   I    +  K+G EL  
Sbjct: 20  GDVQIGDVVTGEVLDIDDSRQLIVGIQGAGVEGVVPLRELSNKHIDDINEVAKIGDELEL 79

Query: 416 -VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
            V   +G   +  +    K  ++++       A+  +       +T++ K G  V    G
Sbjct: 80  VVISKIGNDKEGGSYLLSKKRLEAQAIWKDIQAKEDNNETLEVPVTQVVKGGLVVDA--G 137

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL 532
           V+GF P S +  +      S Y  G+ +K +I+       R+ LS   ++   R ++ + 
Sbjct: 138 VRGFIPASMIE-NRFVNNLSAYE-GKTLKVKIIEIDATKNRLILSHKDVLNEERAAKREE 195

Query: 533 V----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
           V      G +V G V  +T     + +   G   G +    ++   E     + V+K G 
Sbjct: 196 VLNSIHEGDIVEGKVARLTNFGAFIDL---GGMDGLVHISEIS--YERVNKPEDVLKVGE 250

Query: 589 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
           +   ++L +D E + + LS K +L      + + A      +V+ G V  + + G FV  
Sbjct: 251 DVKVKVLSVDPERNRISLSIKQTLAGPWDDIETKAP---VGAVLDGKVKRLTDFGAFVEV 307

Query: 648 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
              + G    S+      A        G+ V+  +LDV  E  R+ LS+K
Sbjct: 308 FPGVEGLVHISQISHKHIATPGDVLKSGEDVKVKVLDVRPEEHRLALSIK 357



 Score = 41.2 bits (95), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 1326 INNLSNLHVGDIVIGQIKRVE-SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
            IN++ ++ +GD+V G++  ++ S  L + I+   + G+  + ELS  H+D+I  + + G+
Sbjct: 16   INSVGDVQIGDVVTGEVLDIDDSRQLIVGIQGAGVEGVVPLRELSNKHIDDINEVAKIGD 75

Query: 1385 KVK-VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1429
            +++ V I K+  +K   S  +     +  A    + ++E+++E +E
Sbjct: 76   ELELVVISKIGNDKEGGSYLLSKKRLEAQAIWKDIQAKEDNNETLE 121


>gi|365824972|ref|ZP_09366932.1| 30S ribosomal protein S1 [Actinomyces graevenitzii C83]
 gi|365259160|gb|EHM89155.1| 30S ribosomal protein S1 [Actinomyces graevenitzii C83]
          Length = 487

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 184/404 (45%), Gaps = 56/404 (13%)

Query: 1011 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1064
            + V++IGS + L    D +I     G  V G V KVD +  LL I    K +  IL    
Sbjct: 14   VAVNDIGSTEELLAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIG--YKTEGVILSREL 71

Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
                  + +    +G  +   VL   KE K  RL+L   +        + +   ++    
Sbjct: 72   SIKHDVDPEEIVAVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWGQIEKIKE 124

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            E  +V G + +++ G  GL++ IG   +      E++ +    P  G +           
Sbjct: 125  EDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----------- 171

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
                ++ K++E+ +      +V LS R+ L+   S   ++              ++ L  
Sbjct: 172  ----LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LQTLQK 211

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
              +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+ 
Sbjct: 212  GQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDF 270

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
              +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL 
Sbjct: 271  DRERVSLSLKAT-----QEDPWQAFARAHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLV 324

Query: 1364 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            H+SEL++ HV+  E + + G++V VK++ +D ++RRISL +K +
Sbjct: 325  HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQA 368



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 267

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDFDRERVSLSLKATQEDPWQAFARAHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 325 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSL 365



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 145/369 (39%), Gaps = 60/369 (16%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G + K+++    +      +G     EL +    +P  +  VG  ++  ++      
Sbjct: 41  IVEGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEIVAVGDEIEALVLQKEDKE 100

Query: 514 RRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 565
            R+ LS           +  ++ E+D V  GS++      V    +++ +  +G+    +
Sbjct: 101 GRLLLSKKRAQYERAWGQIEKIKEEDGVVTGSVIE-----VVKGGLILDIGLRGF----L 151

Query: 566 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-AS 623
           P    A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ ++   
Sbjct: 152 P----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQ 207

Query: 624 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
            +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L
Sbjct: 208 TLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 266

Query: 684 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 743
           DV+ +  R++LSLK +      A F + H                           IG V
Sbjct: 267 DVDFDRERVSLSLKATQEDPWQA-FARAH--------------------------AIGQV 299

Query: 744 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKA 796
           + GKV +   FG  V  E+   + G +   +LA   VE        G  +   ++D+   
Sbjct: 300 VPGKVTKLVPFGAFVRVEDG--IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLD 357

Query: 797 ERLVDLSLK 805
            R + LSLK
Sbjct: 358 RRRISLSLK 366



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 151/349 (43%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEIVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLLLSKKRAQYERAWGQIEKIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 265 VLDVDFDRERVSLSLK-----ATQEDPWQAFARAHAIGQVVPGKVTKLVPFGAFVRVEDG 319

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+          +   VG  V   ++D++ +  RI+LSLKQ+
Sbjct: 320 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQA 368


>gi|84496588|ref|ZP_00995442.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649]
 gi|84383356|gb|EAP99237.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649]
          Length = 502

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 184/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS+  L    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 13   IAINDIGSEEDLLAAIDATIKHFNDGDIVEGIIVKVDRDEVLLDIGYKTEGVIPSRELSI 72

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 73   KHDIDPNEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 119

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 120  KVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 170

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+   S   +               ++
Sbjct: 171  --------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF-------------LK 206

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            +L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 207  ELQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGDEVTVEVL 265

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ +E+  +
Sbjct: 266  DVDMDRERVSLSLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGSFVRVED-GI 319

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HV+  E +   G  + VK++ +D E+RRISL +K +
Sbjct: 320  EGLVHISELAERHVELPEQVVTVGADIFVKVIDIDLERRRISLSLKQA 367



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 152/348 (43%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    + P +  KVG E+   VL  + 
Sbjct: 38  GDIVEGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDIDPNEVVKVGDEVEALVLQKED 97

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGTIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQ 209

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGDEVTVE 263

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 264 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGSFVRVEDGI 319

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISELAERHVELPEQVVTVGADIFVKVIDIDLERRRISLSLKQA 367



 Score = 40.8 bits (94), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 135/309 (43%), Gaps = 54/309 (17%)

Query: 1031 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1081
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 112  ERAWGTIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 170

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1138
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 171  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELQKGQVRSGVVSSIVN 223

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
               G  V +G  + G VH +EL    +  P    + G        DE   V  +VL++  
Sbjct: 224  F--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG--------DE---VTVEVLDVDM 269

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LSL+++ +                P +H  +   +    +V G V  +   
Sbjct: 270  DRE---RVSLSLKATQE---------------DPWQHFARTHAI--GQVVPGKVTKLVPF 309

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   ++  V +S L++ +VE PE+   +G  +  +V+ ++   +R+ ++LK ++ 
Sbjct: 310  GSFVRVEDGIEGLVHISELAERHVELPEQVVTVGADIFVKVIDIDLERRRISLSLKQANE 369

Query: 1319 RTASQSEIN 1327
              A  +E +
Sbjct: 370  DGAGLTEFD 378


>gi|400974618|ref|ZP_10801849.1| 30S ribosomal protein S1 [Salinibacterium sp. PAMC 21357]
          Length = 488

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  + G V K+D +  LL +       + ++   +    +P+E+       ++G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEV------VNVGDTVEAL 91

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1144
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVE------LIKESDGVVTGSVIEVVKG--GLI 141

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V IG   +      EL+ +    P  G               Q ++ K+LE+ +      
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG---------------QEIEAKILELDKNRN--- 183

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            +V LS R+ L+   S + +               + +L+   + +G V ++ + G F+ L
Sbjct: 184  NVVLSRRALLEETQSASRTSF-------------LNNLAKGQVRKGVVSSIVNFGAFVDL 230

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S LS  ++E   +   +G+ V   +L V+   +RV ++LK +      + 
Sbjct: 231  G-GVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLERERVSLSLKAT-----QED 284

Query: 1325 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  H +G +  G++ ++  +G F+ + +  + GL H+SELS  HV+  E +   G
Sbjct: 285  PWQVFARTHAIGQVAPGKVTKLVPFGAFVRVAD-GIEGLVHISELSGKHVELAEQVVSVG 343

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            ++V VK++ +D E+RRISL +K +
Sbjct: 344  DEVFVKVIDIDLERRRISLSLKQA 367



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +++G V+ +D    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKED 97

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E +D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVELIKE-SDGVVT-GSVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R S  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEETQSASRTSFLNNLA 209

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D E   + LS K +  +  Q      +  H    V  G V  ++  G FVR    +
Sbjct: 264 ILEVDLERERVSLSLKATQEDPWQVF----ARTHAIGQVAPGKVTKLVPFGAFVRVADGI 319

Query: 652 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+ + G+  +L+ +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGDEVFVKVIDIDLERRRISLSLKQA 367



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 149/362 (41%), Gaps = 40/362 (11%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  +  G + KI++    +      +G  P  EL +    +P+ + +VG  V+  ++   
Sbjct: 37  DGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKE 96

Query: 511 PASRRINLSFMMKPTRVSEDD--LVKLG-SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS        +  D  L+K    +V+G V  V    ++V +  +G+    +P 
Sbjct: 97  DKEGRLILSKKRAQYERAWGDVELIKESDGVVTGSVIEVVKGGLIVDIGLRGF----LP- 151

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SH 624
              A  +E   V       G E + ++L LD   +N++LS + +L+   Q     +  ++
Sbjct: 152 ---ASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLS-RRALLEETQSASRTSFLNN 207

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   IL+
Sbjct: 208 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILE 266

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-IGSV 743
           V+ E  R++LSLK +        F + H       A+ Q +    ++L     F+ +   
Sbjct: 267 VDLERERVSLSLKATQEDPWQV-FARTH-------AIGQVAPGKVTKLVPFGAFVRVADG 318

Query: 744 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
           IEG VH S   G                H +LA   V  G  +   ++D+    R + LS
Sbjct: 319 IEGLVHISELSG---------------KHVELAEQVVSVGDEVFVKVIDIDLERRRISLS 363

Query: 804 LK 805
           LK
Sbjct: 364 LK 365


>gi|423555636|ref|ZP_17531939.1| ribosomal protein S1 [Bacillus cereus MC67]
 gi|401197040|gb|EJR03978.1| ribosomal protein S1 [Bacillus cereus MC67]
          Length = 382

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +N+  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELNQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 44.3 bits (103), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|377556031|ref|ZP_09785754.1| 30S ribosomal protein S1 [Lactobacillus gastricus PS3]
 gi|376168769|gb|EHS87497.1| 30S ribosomal protein S1 [Lactobacillus gastricus PS3]
          Length = 409

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 95/166 (57%), Gaps = 6/166 (3%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            +L+P  +V+G V  +T+ G FI L   +D  V +S +S  +V+ P     +G+ V  +VL
Sbjct: 197  ELAPGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPADVLEVGEDVKVKVL 255

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            SV+P  +R+ +++K +        E    S    G ++ G +KR+ S+G F+ +    + 
Sbjct: 256  SVDPERERISLSIKQTLPGPWDDIE----SKAPQGTVLTGTVKRLTSFGAFVEV-FPGVE 310

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            GL H+S++S  H+     + + GE+V+VK+L V+ +K+R+ L +K+
Sbjct: 311  GLVHISQISHKHIATPADVLKVGEEVQVKVLNVEADKQRLGLSIKA 356



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 2/110 (1%)

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +++ +EP   R+ ++ K       +++       L  GD+V G++ R+ ++G FI +   
Sbjct: 164  KIVEIEPSENRLILSHKEIVQEQHAEAAAKIFGELAPGDVVEGKVARMTNFGAFIDLGGV 223

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  GL HVSE+S DHVD    +   GE VKVK+L VD E+ RISL +K +
Sbjct: 224  D--GLVHVSEISYDHVDKPADVLEVGEDVKVKVLSVDPERERISLSIKQT 271



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 19/242 (7%)

Query: 473 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 529
           +GV+G  P ++L   P  + + +  VG V+   ++S I  S + N S+++   R+     
Sbjct: 46  SGVEGIVPANQLSTKPVNDINEVVKVGDVLDLVVISKI-GSDKENGSYLLSHRRLEAMKV 104

Query: 530 -DDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 585
            D++      G  ++  V       +VV    +G+   ++ T+H  D L           
Sbjct: 105 WDEIQAKFDNGETLTATVTQAVRGGLVVDAGVRGFVPASMITDHYVDDLNQFK------- 157

Query: 586 PGYEFDQLLVLDNESSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGC 643
            G E +  +V    S N L+ +   ++    A+        + P  VV G V  +   G 
Sbjct: 158 -GQELEFKIVEIEPSENRLILSHKEIVQEQHAEAAAKIFGELAPGDVVEGKVARMTNFGA 216

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           F+  LG + G    S+         +    VG+ V+  +L V+ E  RI+LS+KQ+    
Sbjct: 217 FID-LGGVDGLVHVSEISYDHVDKPADVLEVGEDVKVKVLSVDPERERISLSIKQTLPGP 275

Query: 704 TD 705
            D
Sbjct: 276 WD 277



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 16/241 (6%)

Query: 387 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKL-AIL 443
           GV+   P   +++   V    +FK G EL F+++ ++    R+ ++HK+ + +    A  
Sbjct: 135 GVRGFVPASMITDH-YVDDLNQFK-GQELEFKIVEIEPSENRLILSHKEIVQEQHAEAAA 192

Query: 444 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 503
             + E     +  G + ++   G F+    GV G    SE+  D   +P+ +  VG+ VK
Sbjct: 193 KIFGELAPGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKPADVLEVGEDVK 251

Query: 504 CRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYS 561
            +++S  P   RI+LS         +D   K   G++++G V  +T     V V      
Sbjct: 252 VKVLSVDPERERISLSIKQTLPGPWDDIESKAPQGTVLTGTVKRLTSFGAFVEVFPG--V 309

Query: 562 KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD 621
           +G +    ++   +H      V+K G E  Q+ VL+ E+    L      I + Q+ P D
Sbjct: 310 EGLVHISQISH--KHIATPADVLKVGEEV-QVKVLNVEADKQRLGLS---IKALQEAPKD 363

Query: 622 A 622
           A
Sbjct: 364 A 364


>gi|354582632|ref|ZP_09001533.1| RNA binding S1 domain protein [Paenibacillus lactis 154]
 gi|353198924|gb|EHB64390.1| RNA binding S1 domain protein [Paenibacillus lactis 154]
          Length = 407

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 170/383 (44%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            G  V G + K+++  A ++I       + + +      +L        +G+ V   V+SI
Sbjct: 28   GDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRE--LSSVQLDNASDAVQVGQEVECKVVSI 85

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1147
            N +K+ L L         S + +D  N  D ++      D+    ++ ++ G  GLV  +
Sbjct: 86   NDDKESLVL---------SKRAIDAENAWDELEKHFEAQDVFEVTVADVVKG--GLVADV 134

Query: 1148 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1207
            G   +               P S  +    +  S Y +G+ ++ KV E+ R       V 
Sbjct: 135  GARGF--------------IPASMVERHFVEDFSDY-KGRTLRVKVKELDRE---NNKVI 176

Query: 1208 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1267
            LS +  L+     N   +             + +L    +++G V+ +T  G F+ +   
Sbjct: 177  LSQKDVLEEEFEANKQKV-------------MAELKEGQVLEGTVQRLTQFGAFVDVG-G 222

Query: 1268 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS---RTASQS 1324
            +D  V +S ++  +V+ P      G  V  +VL V+P   ++ +++K +      TA + 
Sbjct: 223  VDGLVHVSEIAWNHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAAGPGPWETAGE- 281

Query: 1325 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                    H GDIV G +KR+ S+G F+ +    + GL H+S++S  H+   + + + G+
Sbjct: 282  ------QFHTGDIVTGVVKRLVSFGAFVEL-APGVEGLVHISQISHKHIGTPQEVLKEGQ 334

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +V+VK+L ++  ++R+SL +K +
Sbjct: 335  EVQVKVLDINPSEQRVSLSIKET 357



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           +++K G V++G V  +  FGA V   GGV  L  +  ++   + KP      G ++  +V
Sbjct: 196 AELKEGQVLEGTVQRLTQFGAFVDV-GGVDGLVHVSEIAWNHVDKPSDVLSEGDQVRVKV 254

Query: 420 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGV 475
           L V  ++  ++     +  K A    +  A ++     I  G + ++   G FV    GV
Sbjct: 255 LKVDPEKGKIS-----LSIKAAGPGPWETAGEQFHTGDIVTGVVKRLVSFGAFVELAPGV 309

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           +G    S++       P  +   GQ V+ +++   P+ +R++LS 
Sbjct: 310 EGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINPSEQRVSLSI 354



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 306 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 365
           V +S++A   V K      EG  VRV++L     +G  +  +KA+              G
Sbjct: 227 VHVSEIAWNHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAAGPGPWETAGEQFHTG 286

Query: 366 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK-- 423
            +V G V  + SFGA V+   GV+ L  +  +S   I  P +  K G E+  +VL +   
Sbjct: 287 DIVTGVVKRLVSFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINPS 346

Query: 424 SKRITVTHKKT 434
            +R++++ K+T
Sbjct: 347 EQRVSLSIKET 357



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 34/199 (17%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            + EG ++ G + ++     G  V +G  + G VH +E+    V  P         D LS 
Sbjct: 198  LKEGQVLEGTVQRLTQF--GAFVDVG-GVDGLVHVSEIAWNHVDKP--------SDVLS- 245

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
              EG  V+ KVL++    +G   + LS++++                  PG      E  
Sbjct: 246  --EGDQVRVKVLKVDPE-KG--KISLSIKAA-----------------GPGPWETAGEQF 283

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                IV G VK + S G F+ L+  ++  V +S +S  ++ +P++    G+ V  +VL +
Sbjct: 284  HTGDIVTGVVKRLVSFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDI 343

Query: 1303 EPLSKRVEVTLKTSDSRTA 1321
             P  +RV +++K ++   A
Sbjct: 344  NPSEQRVSLSIKETEEAPA 362



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 141/357 (39%), Gaps = 43/357 (12%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K G  VKG ++ ++   A V        + P+  +S  ++       +VG E+  +V+ 
Sbjct: 25  LKKGDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRELSSVQLDNASDAVQVGQEVECKVVS 84

Query: 422 VKSKRITVTHKKTLVKSKLAI--------LSSYAEATDRLITHGWITKIEKHGCFVRFYN 473
           +         K++LV SK AI        L  + EA D  +    +  + K G       
Sbjct: 85  IND------DKESLVLSKRAIDAENAWDELEKHFEAQD--VFEVTVADVVKGGLVADV-- 134

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPT 525
           G +GF P S +      E  S Y  G+ ++ ++      + ++ LS        F     
Sbjct: 135 GARGFIPASMVERH-FVEDFSDYK-GRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQ 192

Query: 526 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 585
           +V  +  +K G ++ G V  +T     V V   G   G +    +A    H      V+ 
Sbjct: 193 KVMAE--LKEGQVLEGTVQRLTQFGAFVDV---GGVDGLVHVSEIA--WNHVDKPSDVLS 245

Query: 586 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETG 642
            G +   ++L +D E   + LS     I +A   P + +    H   +V G V  ++  G
Sbjct: 246 EGDQVRVKVLKVDPEKGKISLS-----IKAAGPGPWETAGEQFHTGDIVTGVVKRLVSFG 300

Query: 643 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            FV     + G    S+          +    GQ V+  +LD+N    R++LS+K++
Sbjct: 301 AFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINPSEQRVSLSIKET 357



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%)

Query: 1310 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1369
            E T     +   SQ +++ + +L  GD V G I ++E    +++I      G+  V ELS
Sbjct: 3    EETRNQESAEMQSQEQLDQIVSLKKGDTVKGTIVKLEDNQAYVSI-GYKYDGVIPVRELS 61

Query: 1370 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
               +DN     + G++V+ K++ ++ +K  + L  ++   +N  D L+
Sbjct: 62   SVQLDNASDAVQVGQEVECKVVSINDDKESLVLSKRAIDAENAWDELE 109


>gi|108799971|ref|YP_640168.1| 30S ribosomal protein S1 [Mycobacterium sp. MCS]
 gi|119869083|ref|YP_939035.1| 30S ribosomal protein S1 [Mycobacterium sp. KMS]
 gi|126435599|ref|YP_001071290.1| 30S ribosomal protein S1 [Mycobacterium sp. JLS]
 gi|108770390|gb|ABG09112.1| SSU ribosomal protein S1P [Mycobacterium sp. MCS]
 gi|119695172|gb|ABL92245.1| SSU ribosomal protein S1P [Mycobacterium sp. KMS]
 gi|126235399|gb|ABN98799.1| SSU ribosomal protein S1P [Mycobacterium sp. JLS]
          Length = 479

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 173/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 36   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VSVGDEVEAL 89

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 90   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEAVKGTVIEVVKG--GLIL 140

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 141  DIGLRGFLPASLVEMRRVRDLQPYIGKE---------------IEAKIIELDKNRN---N 182

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    I +G V ++ + G F+ L 
Sbjct: 183  VVLSRRAWLEQTQSEVRSEF-------------LNQLQKGAIRKGVVSSIVNFGAFVDLG 229

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 230  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDP 283

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
              + +  H +G IV G++ ++  +G F+ +E   + GL H+SELSE HV+  + + + G+
Sbjct: 284  WRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELSERHVEVPDQVVQVGD 342

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
               VK++ +D E+RRISL +K +
Sbjct: 343  DAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 151/380 (39%), Gaps = 46/380 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRR 357

Query: 800 VDLSLKTVFIDRFREANSNR 819
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377



 Score = 47.4 bits (111), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407


>gi|441510773|ref|ZP_20992675.1| 30S ribosomal protein S1 [Gordonia aichiensis NBRC 108223]
 gi|441445109|dbj|GAC50636.1| 30S ribosomal protein S1 [Gordonia aichiensis NBRC 108223]
          Length = 487

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VDD-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  ++   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDDG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.4 bits (111), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDDGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|134101930|ref|YP_001107591.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
 gi|291007060|ref|ZP_06565033.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
 gi|133914553|emb|CAM04666.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
          Length = 501

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 128/268 (47%), Gaps = 39/268 (14%)

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            GGL++ IG   +      E++ +    P  G +               ++ K++E+ +  
Sbjct: 143  GGLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNR 187

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                +V LS R+ L+   S   S+              +  L    + +G V ++ + G 
Sbjct: 188  N---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKGQVRKGVVSSIVNFGA 231

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +    
Sbjct: 232  FVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDP 290

Query: 1321 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
              Q      +  H +G IV G++ ++  +G F+ + +  + GL H+SEL+E HV+  E +
Sbjct: 291  WRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQV 344

Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             + G+ V +K++ +D E+RRISL +K +
Sbjct: 345  VQVGDDVMIKVIDIDLERRRISLSLKQA 372



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 145/366 (39%), Gaps = 46/366 (12%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 41  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQK 100

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 101 EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGFLPASL- 159

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 160 -------VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 212

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 213 LQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 271

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 272 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 304

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 799
            GKV +   FG  V  +E  +    I+     H ++    V+ G  +   ++D+    R 
Sbjct: 305 PGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMIKVIDIDLERRR 364

Query: 800 VDLSLK 805
           + LSLK
Sbjct: 365 ISLSLK 370



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQKED 102

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 214

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 324

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 708
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T D+ F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVGDDVMIKVIDIDLERRRISLSLKQANEGFTPDSEF 382


>gi|332670357|ref|YP_004453365.1| RNA binding S1 domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332339395|gb|AEE45978.1| RNA binding S1 domain protein [Cellulomonas fimi ATCC 484]
          Length = 510

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 187/414 (45%), Gaps = 66/414 (15%)

Query: 1007 KPS--MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            KP+   + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 28   KPATPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 87

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P E+        +G  V   VL   KE K  RL+L   +        + 
Sbjct: 88   SRELSIKHDVDPGEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYER 134

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 135  AWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 191

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+    T S   ST + T   
Sbjct: 192  --------------IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT--- 228

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                   L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ 
Sbjct: 229  -------LQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQE 280

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ 
Sbjct: 281  VTVEVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVR 335

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E+  + GL H+SEL+  HV+  E + + G+ V VK++ +D E+RRISL +K +
Sbjct: 336  VED-GIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQA 388



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 229 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 287

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 288 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 344

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +     P  +  VG  V  +++      RRI+LS 
Sbjct: 345 HISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSL 385



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 166/394 (42%), Gaps = 39/394 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V PG+  KVG E+   VL  + 
Sbjct: 59  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDEVEALVLQKED 118

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 119 KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 174

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 175 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 230

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 231 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 284

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 285 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 339

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS------CCSST 704
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+           
Sbjct: 340 IEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQANEGFDPASEDF 399

Query: 705 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 738
           D +        +E+         + S  +W+EGF
Sbjct: 400 DPALYGMAAEYDEQGNYKYPEGFDPSTNEWLEGF 433


>gi|88856205|ref|ZP_01130865.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
 gi|88814524|gb|EAR24386.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
          Length = 488

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  + G V K+D +  LL +       + ++   +    +P+E+       ++G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEV------VNVGDTVEAL 91

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1144
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVE------LIKESDGVVTGSVIEVVKG--GLI 141

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V IG   +      EL+ +    P  G               Q ++ K+LE+ +      
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG---------------QEIEAKILELDKNRN--- 183

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            +V LS R+ L+   S + +               + +L+   + +G V ++ + G F+ L
Sbjct: 184  NVVLSRRALLEETQSASRTSF-------------LNNLAKGQVRKGVVSSIVNFGAFVDL 230

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S LS  ++E   +   +G+ V   +L V+   +RV ++LK +      + 
Sbjct: 231  G-GVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLERERVSLSLKAT-----QED 284

Query: 1325 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  H +G +  G++ ++  +G F+ + +  + GL H+SELS  HV+  E +   G
Sbjct: 285  PWQVFARTHAIGQVAPGKVTKLVPFGAFVRVAD-GIEGLVHISELSGKHVELAEQVVSVG 343

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            ++V VK++ +D E+RRISL +K +
Sbjct: 344  DEVFVKVIDIDLERRRISLSLKQA 367



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +++G V+ +D    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKED 97

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E +D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVELIKE-SDGVVT-GSVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R S  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEETQSASRTSFLNNLA 209

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D E   + LS K +  +  Q      +  H    V  G V  ++  G FVR    +
Sbjct: 264 ILEVDLERERVSLSLKATQEDPWQVF----ARTHAIGQVAPGKVTKLVPFGAFVRVADGI 319

Query: 652 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+ + G+  +L+ +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGDEVFVKVIDIDLERRRISLSLKQA 367



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 149/362 (41%), Gaps = 40/362 (11%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  +  G + KI++    +      +G  P  EL +    +P+ + +VG  V+  ++   
Sbjct: 37  DGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKE 96

Query: 511 PASRRINLSFMMKPTRVSEDD--LVKLG-SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS        +  D  L+K    +V+G V  V    ++V +  +G+    +P 
Sbjct: 97  DKEGRLILSKKRAQYERAWGDVELIKESDGVVTGSVIEVVKGGLIVDIGLRGF----LP- 151

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SH 624
              A  +E   V       G E + ++L LD   +N++LS + +L+   Q     +  ++
Sbjct: 152 ---ASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLS-RRALLEETQSASRTSFLNN 207

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   IL+
Sbjct: 208 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILE 266

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-IGSV 743
           V+ E  R++LSLK +        F + H       A+ Q +    ++L     F+ +   
Sbjct: 267 VDLERERVSLSLKATQEDPWQV-FARTH-------AIGQVAPGKVTKLVPFGAFVRVADG 318

Query: 744 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
           IEG VH S   G                H +LA   V  G  +   ++D+    R + LS
Sbjct: 319 IEGLVHISELSG---------------KHVELAEQVVSVGDEVFVKVIDIDLERRRISLS 363

Query: 804 LK 805
           LK
Sbjct: 364 LK 365


>gi|330836582|ref|YP_004411223.1| RNA binding S1 domain-containing protein [Sphaerochaeta coccoides DSM
            17374]
 gi|329748485|gb|AEC01841.1| RNA binding S1 domain protein [Sphaerochaeta coccoides DSM 17374]
          Length = 571

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 93/160 (58%), Gaps = 7/160 (4%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +VQG VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  R+++++P +
Sbjct: 204  VVQGVVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGQTIELRLINIDPET 262

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            ++V ++LK       S  E     N +VGD+V   + ++ ++G FI I    + GL H+S
Sbjct: 263  QKVNLSLKHMHEDPWSSFE----KNFNVGDVVKAPVTKLTTFGAFIEIA-PGIEGLAHIS 317

Query: 1367 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            ELS    V+N + +   G+ V+ KIL  D +K+R+SLG+K
Sbjct: 318  ELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKKRVSLGLK 357



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 154/352 (43%), Gaps = 27/352 (7%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S V  G VV+G V +  SFGA +   GG   L  +  MS   + +P    K G  +  R+
Sbjct: 197 SSVHIGDVVQGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQTIELRL 255

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           + +  +++++ ++ K  + +   +         D  +    +TK+   G F+    G++G
Sbjct: 256 INIDPETQKVNLSLKH-MHEDPWSSFEKNFNVGD--VVKAPVTKLTTFGAFIEIAPGIEG 312

Query: 478 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVK 534
            A  SEL        P  +  VG VV+ +I+      +R++L    + +    S DD   
Sbjct: 313 LAHISELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKKRVSLGLKQLEENPWDSIDDRYP 372

Query: 535 LG-SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFD 591
           +G +L   VV +    A +      G   G     H+ D    E    M S  K G   D
Sbjct: 373 VGKTLTRPVVKITNSGAFI------GLEDGIDGFLHIDDISWTEKVRNMSSFAKEGDMVD 426

Query: 592 QLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLG 649
            ++  ++ E+  + LS K    N    L  D    +P  S + G V N+ + G FV+ LG
Sbjct: 427 VVVTRVEPENRRIRLSVKQLEDNPWNTLKKD----YPKYSSISGEVTNVTDFGVFVKVLG 482

Query: 650 RLTGFAPRSKAV--DGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            + G   +   V  D +  D + K + VG  V + ++DVN  T +++LS+K+
Sbjct: 483 GIEGLISKFHLVGPDEEYNDSVLKNFKVGDVVTAAVMDVNPSTQKLSLSIKE 534



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 42/201 (20%)

Query: 1236 LEKIEDL-------SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK- 1287
            LEK EDL       SP   V G    V   G  I L  +      +S      VE PE  
Sbjct: 100  LEKTEDLRKAAEDRSP---VLGKFVKVIKGGYEIDLGGEYRGFCPMSKADVSRVEDPESL 156

Query: 1288 -----EFPIGKLVAGRVLSV-----EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1337
                  F I K  AG  L       E L KR++   +T              S++H+GD+
Sbjct: 157  IGLSDYFIIDKFHAGTKLKSVVSRREYLEKRIKENKETF------------FSSVHIGDV 204

Query: 1338 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1397
            V G +K   S+G FI +   +  GL H++++S  HV   +   + G+ ++++++ +D E 
Sbjct: 205  VQGVVKSFTSFGAFIDLGGFD--GLLHINDMSWGHVTRPKDFVKKGQTIELRLINIDPET 262

Query: 1398 RRISLGMK-------SSYFKN 1411
            ++++L +K       SS+ KN
Sbjct: 263  QKVNLSLKHMHEDPWSSFEKN 283



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 152/368 (41%), Gaps = 40/368 (10%)

Query: 347 LKASAFEGLVFTHSD-VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV-K 404
           L  S  E  VF   D ++ G +V G VI V++    V    G K+   +P + EF+++ +
Sbjct: 15  LMESLLEHDVFKSLDEIEDGTLVTGTVIQVNNEYVFVDV--GYKSEGRIP-LDEFDVIPE 71

Query: 405 PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 464
            G+K KV    +    G K  +I ++ ++ +   K   L   AE  DR    G   K+ K
Sbjct: 72  DGEKVKV---FIITKDG-KGGQIQISKRRAVTLEKTEDLRKAAE--DRSPVLGKFVKVIK 125

Query: 465 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSM-----------YHVGQVVKCRIMSSIPAS 513
            G  +      +GF P S+  +    +P S+           +H G  +K  +      S
Sbjct: 126 GGYEIDLGGEYRGFCPMSKADVSRVEDPESLIGLSDYFIIDKFHAGTKLKSVV------S 179

Query: 514 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD- 572
           RR  L   +K  + +    V +G +V GVV   T     + +   G   G +   H+ D 
Sbjct: 180 RREYLEKRIKENKETFFSSVHIGDVVQGVVKSFTSFGAFIDL---GGFDGLL---HINDM 233

Query: 573 HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 631
              H T  K  +K G   + +L+ +D E+  + LS K+          S   + +   VV
Sbjct: 234 SWGHVTRPKDFVKKGQTIELRLINIDPETQKVNLSLKHM---HEDPWSSFEKNFNVGDVV 290

Query: 632 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETG 690
              V  +   G F+     + G A  S+    +R +  K    VG  V + IL  + +  
Sbjct: 291 KAPVTKLTTFGAFIEIAPGIEGLAHISELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKK 350

Query: 691 RITLSLKQ 698
           R++L LKQ
Sbjct: 351 RVSLGLKQ 358


>gi|423408547|ref|ZP_17385696.1| ribosomal protein S1 [Bacillus cereus BAG2X1-3]
 gi|401657637|gb|EJS75145.1| ribosomal protein S1 [Bacillus cereus BAG2X1-3]
          Length = 382

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 185/417 (44%), Gaps = 64/417 (15%)

Query: 1018 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1077
            +K + +  ++ +G  VTG V KV+ +  L+ +        +  D     SEL       H
Sbjct: 6    NKEVMDSKELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVH 54

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISK 1135
            I KA    V+ +++  +L  + L      +S + VD       +Q     G +    +  
Sbjct: 55   IEKA--SDVVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVALQEKFTSGHVFDVTVKD 112

Query: 1136 ILSGVGGLVVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1190
            I++G  GLVV +G     P     VH+ E                     + Y +G+ + 
Sbjct: 113  IVNG--GLVVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLA 150

Query: 1191 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1250
             K++E+ R       V LS ++ ++             ++   K  E I  L    +V+G
Sbjct: 151  VKIVELDRE---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEG 194

Query: 1251 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1310
             V+ +T  G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ 
Sbjct: 195  TVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRIS 253

Query: 1311 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            +++K +          N    + VGDI  G +KR+ ++G F+ I    + GL HVS+++ 
Sbjct: 254  LSIKAAQPGPWE----NVAGEIKVGDIREGVVKRLATFGAFVEI-LPGVEGLVHVSQIAN 308

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
             HV N   +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 309  RHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          ++   +  D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKVGD--IREGVVKRLATFGAFVEILPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 530
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 134/294 (45%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++  G     + ++            
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAAQPGPWENVAGEI------------ 271

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            K+ D+      +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 272  KVGDIR-----EGVVKRLATFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|256826974|ref|YP_003150933.1| 30S ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
 gi|256583117|gb|ACU94251.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
          Length = 403

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 178/385 (46%), Gaps = 62/385 (16%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V K++ +  L+ I       + A+   +    +PS++       ++G ++   
Sbjct: 34   GDLVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRKDADPSDI------VNLGDSIEAL 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            VL   KE K  RL+L       S K  +      +++     G+IV G + +++ G  GL
Sbjct: 88   VL--QKEDKDGRLIL-------SKKRAEYERAWISVEEKFKAGEIVSGEVIEVVKG--GL 136

Query: 1144 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1203
            ++ IG   +      +L+ +   D   G       PL         + +V+E+ R     
Sbjct: 137  ILDIGLRGFLPASLVDLRRVKDLDMYLGT------PL---------EARVIEMDRN---R 178

Query: 1204 FHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
             +V LS R  L+ G  +  +  LS               L+  M ++G V ++   G F+
Sbjct: 179  NNVVLSRRVLLEEGRKNERAEILSR--------------LTKGMRLKGTVSSIVDFGAFV 224

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
             L   +D  V +S LS  +V  P +   +G  V  +VL V+   +R+ + LK    +T  
Sbjct: 225  DLG-GIDGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDLQRERISLGLK----QTTE 279

Query: 1323 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1382
               +  + +  VG I+ G++ +   +G F+ +   N+ GL H+SE++  H++    +  A
Sbjct: 280  DPWVKLVESYPVGSIIDGKVTKTVPFGAFVEL-GPNVEGLVHISEMANKHIEAPTQVVHA 338

Query: 1383 GEKVKVKILKVDKEKRRISLGMKSS 1407
            G++VKVK+++++ E+RRISL MK++
Sbjct: 339  GDEVKVKVMEINTERRRISLSMKAA 363



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
           GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL V  
Sbjct: 207 GMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDL 265

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           + +RI++  K+T     + ++ SY   +   I  G +TK    G FV     V+G    S
Sbjct: 266 QRERISLGLKQTTEDPWVKLVESYPVGS---IIDGKVTKTVPFGAFVELGPNVEGLVHIS 322

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           E+       P+ + H G  VK ++M      RRI+LS 
Sbjct: 323 EMANKHIEAPTQVVHAGDEVKVKVMEINTERRRISLSM 360



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/366 (20%), Positives = 152/366 (41%), Gaps = 52/366 (14%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G + KIE+    V      +G  P  EL +    +PS + ++G  ++  ++      
Sbjct: 36  LVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRKDADPSDIVNLGDSIEALVLQKEDKD 95

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +   +S ++  K G +VSG V  V    +++ +  +G+   ++     
Sbjct: 96  GRLILSKKRAEYERAWISVEEKFKAGEIVSGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 571 ADHLEH--ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 627
              L+    T +++         +++ +D   +N++LS +  L    +   ++  S +  
Sbjct: 156 VKDLDMYLGTPLEA---------RVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSRLTK 206

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
              + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+ 
Sbjct: 207 GMRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDL 265

Query: 688 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 747
           +  RI+L LKQ+                                +K VE + +GS+I+GK
Sbjct: 266 QRERISLGLKQTTEDPW---------------------------VKLVESYPVGSIIDGK 298

Query: 748 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLV 800
           V ++  FG  V      +V G +   ++A   +E       +G  ++  ++++    R +
Sbjct: 299 VTKTVPFGAFVEL--GPNVEGLVHISEMANKHIEAPTQVVHAGDEVKVKVMEINTERRRI 356

Query: 801 DLSLKT 806
            LS+K 
Sbjct: 357 SLSMKA 362



 Score = 41.2 bits (95), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 145/352 (41%), Gaps = 23/352 (6%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           T ++   G +V G V+ ++    +V      + + P   +S  +   P     +G  +  
Sbjct: 27  TLTEFDEGDLVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRKDADPSDIVNLGDSIEA 86

Query: 418 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
            VL  + K   +   K   + + A +S   +     I  G + ++ K G  +    G++G
Sbjct: 87  LVLQKEDKDGRLILSKKRAEYERAWISVEEKFKAGEIVSGEVIEVVKGGLILDI--GLRG 144

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDD 531
           F P S + L    +   MY +G  ++ R++      +++  SRR+ L    K  R     
Sbjct: 145 FLPASLVDLRR-VKDLDMY-LGTPLEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILS 202

Query: 532 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEF 590
            +  G  + G V  +      V +   G   G +    L+  H+ H +    V+K G E 
Sbjct: 203 RLTKGMRLKGTVSSIVDFGAFVDL---GGIDGLVHISELSWSHVNHPS---EVVKVGDEV 256

Query: 591 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFL 648
           + Q+L +D +   + L  K +  +   +L       +P  S++ G V   +  G FV   
Sbjct: 257 EVQVLDVDLQRERISLGLKQTTEDPWVKLVES----YPVGSIIDGKVTKTVPFGAFVELG 312

Query: 649 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
             + G    S+  +      ++  + G  V+  ++++N+E  RI+LS+K + 
Sbjct: 313 PNVEGLVHISEMANKHIEAPTQVVHAGDEVKVKVMEINTERRRISLSMKAAA 364


>gi|15827720|ref|NP_301983.1| 30S ribosomal protein S1 [Mycobacterium leprae TN]
 gi|221230197|ref|YP_002503613.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
 gi|13432211|sp|P46836.2|RS1_MYCLE RecName: Full=30S ribosomal protein S1
 gi|13093271|emb|CAC31763.1| 30S ribosomal protein S1 [Mycobacterium leprae]
 gi|219933304|emb|CAR71477.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
          Length = 481

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V+++GS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVPSPQIAVNDVGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGIVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGNE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 150/381 (39%), Gaps = 53/381 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G+V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLKTV---FIDRFREA 815
           R + LSLK     +I+ F  A
Sbjct: 356 RRISLSLKQANEDYIEEFDPA 376



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 166/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGIVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGNEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+     +  +++E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA-----NEDYIEE 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDPDSNEWLEGF 407


>gi|359772824|ref|ZP_09276239.1| 30S ribosomal protein S1 [Gordonia effusa NBRC 100432]
 gi|359310011|dbj|GAB19017.1| 30S ribosomal protein S1 [Gordonia effusa NBRC 100432]
          Length = 491

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         ++   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPNEVVQVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H      V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDDQGNYIFPEGFDAETNEWLEGF 407


>gi|251796396|ref|YP_003011127.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JDR-2]
 gi|247544022|gb|ACT01041.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
          Length = 411

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 173/378 (45%), Gaps = 48/378 (12%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            G  V G + K+D+  A +++       + + +      +L        +G+ V   V+SI
Sbjct: 22   GDTVKGTIIKIDDNQAYVSLGYKYDGVIPVRE--LSAVQLDNANDAVQVGQEVELKVVSI 79

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
            + EK+ L L  R   DG      + + D +Q+    G++    ++ ++ G  GLV  +G 
Sbjct: 80   DDEKEKLVLSKR-LIDG------ERAWDGLQSRFESGEVFEVAVADVVKG--GLVADVG- 129

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
             + G +  + ++   V D             S Y +G+ ++ KV EI R       V LS
Sbjct: 130  -VRGFIPASMVERHFVED------------FSDY-KGRTLRVKVKEIDRE---NNKVILS 172

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
             +  LD     N            +H+  I  L     ++G V+ +T  G F+ +   +D
Sbjct: 173  AKDVLDAEFEQNK-----------QHV--IAGLQVGAQLEGTVQRLTPFGAFVDIG-GID 218

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1329
              V +S LS  +V  P+     G+ V  +VL V+P + ++ +++K +       +     
Sbjct: 219  GLVHVSELSWQHVAHPKDVVSEGQQVTVKVLKVDPAAGKISLSIKAAQPGPWESA----A 274

Query: 1330 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1389
               +VGDIV G ++R+ ++G F+ I    + GL H+S+++  H+     + + G++V+ K
Sbjct: 275  GQFNVGDIVTGTVRRLVTFGAFVEIA-PGVEGLVHISQIAHRHIATPFEVLKEGQEVQAK 333

Query: 1390 ILKVDKEKRRISLGMKSS 1407
            +L  +  ++R+SL +K +
Sbjct: 334  VLDFNPAEKRVSLSIKET 351



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 145/351 (41%), Gaps = 31/351 (8%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K G  VKG +I +D   A V        + P+  +S  ++       +VG E+  +V+ 
Sbjct: 19  LKKGDTVKGTIIKIDDNQAYVSLGYKYDGVIPVRELSAVQLDNANDAVQVGQEVELKVVS 78

Query: 422 VKSKRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           +  ++  +   K L+  + A   L S  E+ +  +    +  + K G       GV+GF 
Sbjct: 79  IDDEKEKLVLSKRLIDGERAWDGLQSRFESGE--VFEVAVADVVKGGLVADV--GVRGFI 134

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPTRVSEDD 531
           P S +      E  S Y  G+ ++ ++      + ++ LS        F      V    
Sbjct: 135 PASMVERH-FVEDFSDYK-GRTLRVKVKEIDRENNKVILSAKDVLDAEFEQNKQHVIAG- 191

Query: 532 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 591
            +++G+ + G V  +TP    V +   G   G +    L+   +H    K V+  G +  
Sbjct: 192 -LQVGAQLEGTVQRLTPFGAFVDI---GGIDGLVHVSELS--WQHVAHPKDVVSEGQQVT 245

Query: 592 -QLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNIIETGCFVRFL 648
            ++L +D  +  + LS     I +AQ  P  S A   +   +V G V  ++  G FV   
Sbjct: 246 VKVLKVDPAAGKISLS-----IKAAQPGPWESAAGQFNVGDIVTGTVRRLVTFGAFVEIA 300

Query: 649 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
             + G    S+      A   +    GQ V++ +LD N    R++LS+K++
Sbjct: 301 PGVEGLVHISQIAHRHIATPFEVLKEGQEVQAKVLDFNPAEKRVSLSIKET 351



 Score = 44.3 bits (103), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 82/383 (21%), Positives = 156/383 (40%), Gaps = 60/383 (15%)

Query: 961  EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL 1020
            E+N      ++N F + K G TV   II    K D  ++++        ++ V E+ +  
Sbjct: 4    EINVQDQAAMDN-FVSLKKGDTVKGTII----KIDDNQAYVSLGYKYDGVIPVRELSAVQ 58

Query: 1021 LFEECD-VSIGQRVTGYVYKVDNEWALLTISRHL---KAQLFILDSAYEPSELQEFQRRF 1076
            L    D V +GQ V   V  +D+E   L +S+ L   +     L S +E  E+ E     
Sbjct: 59   LDNANDAVQVGQEVELKVVSIDDEKEKLVLSKRLIDGERAWDGLQSRFESGEVFEVA--- 115

Query: 1077 HIGKAVTGHVLSINKEKKLL--RLVLRPFQDGISD--------KTVDISNDNMQTFIHEG 1126
             +   V G +++    +  +   +V R F +  SD        K  +I  +N +  +   
Sbjct: 116  -VADVVKGGLVADVGVRGFIPASMVERHFVEDFSDYKGRTLRVKVKEIDRENNKVILSAK 174

Query: 1127 DIVGGRISK----ILSGVGGLVVQIGPHLYGRVH----FTELKNICVSDPLSGYDEGQFD 1178
            D++     +    +++G+     Q+G  L G V     F    +I   D L    E  + 
Sbjct: 175  DVLDAEFEQNKQHVIAGL-----QVGAQLEGTVQRLTPFGAFVDIGGIDGLVHVSELSWQ 229

Query: 1179 ----PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                P     EGQ V  KVL++         + LS++++  G   + +   +        
Sbjct: 230  HVAHPKDVVSEGQQVTVKVLKVDPA---AGKISLSIKAAQPGPWESAAGQFNV------- 279

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                        IV G V+ + + G F+ ++  ++  V +S ++  ++ +P +    G+ 
Sbjct: 280  ----------GDIVTGTVRRLVTFGAFVEIAPGVEGLVHISQIAHRHIATPFEVLKEGQE 329

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSD 1317
            V  +VL   P  KRV +++K ++
Sbjct: 330  VQAKVLDFNPAEKRVSLSIKETE 352



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 1323 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1382
            Q+ ++N  +L  GD V G I +++    ++++      G+  V ELS   +DN     + 
Sbjct: 10   QAAMDNFVSLKKGDTVKGTIIKIDDNQAYVSL-GYKYDGVIPVRELSAVQLDNANDAVQV 68

Query: 1383 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1429
            G++V++K++ +D EK ++ L  +    +   D LQ  S  ES E  E
Sbjct: 69   GQEVELKVVSIDDEKEKLVLSKRLIDGERAWDGLQ--SRFESGEVFE 113


>gi|403746310|ref|ZP_10954843.1| RNA binding S1 domain-containing protein [Alicyclobacillus hesperidum
            URH17-3-68]
 gi|403120641|gb|EJY54995.1| RNA binding S1 domain-containing protein [Alicyclobacillus hesperidum
            URH17-3-68]
          Length = 393

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 172/389 (44%), Gaps = 56/389 (14%)

Query: 1021 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1076
            +  +  V  G  VTG V  VD     + +S     H+  Q         P+E+       
Sbjct: 15   MLTDAAVREGDVVTGEVTAVDENGVTVALSHGFEGHIAPQELSAVPGTNPTEVTS----- 69

Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
             +G  +T  V+ ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 70   -VGSQITAVVVKVDMESGQVTLSKRRAEQASA-------WNRMQELLASGEPIEVEIRDV 121

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
            + G  GLV  +G   +               P S  D    + L  + +G+ ++ KV+E+
Sbjct: 122  VKG--GLVADVGVRAF--------------IPASLVDRRFVENLDEF-KGKTLRAKVVEV 164

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
                       LS R+ L+  +   +  L             +E+L P  +++G V+ +T
Sbjct: 165  DPEKNKLI---LSRRALLEEETEAKAKAL-------------MEELKPGDVIEGTVQRLT 208

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
              G F+ +    D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +
Sbjct: 209  DFGAFVDIG-GADGLVHISELSFSHVNHPSEVVHEGDRVKVRVLRVDPEAGRISLSIKAA 267

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
                  +    + ++   GD+V G +KRV  +G F+ ++   L GL HVS++S +HV + 
Sbjct: 268  LPEPWEE----HANDYQPGDVVQGVVKRVVDFGAFVELQ-PGLEGLVHVSQISNEHVAHA 322

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              + + G++V V++L VD E+RRISL M+
Sbjct: 323  SDVLQPGQEVTVRVLSVDPERRRISLSMR 351



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 14/122 (11%)

Query: 1292 GKLVAGRVLSVEP------LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1345
            GK +  +V+ V+P      LS+R  +  +T     A   E      L  GD++ G ++R+
Sbjct: 154  GKTLRAKVVEVDPEKNKLILSRRALLEEETEAKAKALMEE------LKPGDVIEGTVQRL 207

Query: 1346 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              +G F+ I   +  GL H+SELS  HV++   +   G++VKV++L+VD E  RISL +K
Sbjct: 208  TDFGAFVDIGGAD--GLVHISELSFSHVNHPSEVVHEGDRVKVRVLRVDPEAGRISLSIK 265

Query: 1406 SS 1407
            ++
Sbjct: 266  AA 267



 Score = 45.8 bits (107), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 149/363 (41%), Gaps = 31/363 (8%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           + T + V+ G VV G+V AVD  G  V    G +       +S      P +   VG+++
Sbjct: 15  MLTDAAVREGDVVTGEVTAVDENGVTVALSHGFEGHIAPQELSAVPGTNPTEVTSVGSQI 74

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 470
              V+ V  +   VT  K     + A  +S       L+  G   ++E     K G    
Sbjct: 75  TAVVVKVDMESGQVTLSK-----RRAEQASAWNRMQELLASGEPIEVEIRDVVKGGLVAD 129

Query: 471 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRV 527
              GV+ F P S +  D     +     G+ ++ +++   P   ++ LS    + + T  
Sbjct: 130 V--GVRAFIPASLV--DRRFVENLDEFKGKTLRAKVVEVDPEKNKLILSRRALLEEETEA 185

Query: 528 SEDDLV---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 583
               L+   K G ++ G V  +T     V +   G + G +    L+  H+ H +    V
Sbjct: 186 KAKALMEELKPGDVIEGTVQRLTDFGAFVDI---GGADGLVHISELSFSHVNHPS---EV 239

Query: 584 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
           +  G     ++L +D E+  + LS K +L    ++  +D     P  VV G V  +++ G
Sbjct: 240 VHEGDRVKVRVLRVDPEAGRISLSIKAALPEPWEEHAND---YQPGDVVQGVVKRVVDFG 296

Query: 643 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
            FV     L G    S+  +   A  S     GQ V   +L V+ E  RI+LS+++   S
Sbjct: 297 AFVELQPGLEGLVHVSQISNEHVAHASDVLQPGQEVTVRVLSVDPERRRISLSMREPGPS 356

Query: 703 STD 705
            ++
Sbjct: 357 RSE 359



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 145/356 (40%), Gaps = 40/356 (11%)

Query: 87  LYKGLSLETVQEGMVLTAYVKSIED--------HGYILHFGLPSFTGFLPRNNLAENSGI 138
           L + L+   V+EG V+T  V ++++        HG+  H   P     +P  N  E + +
Sbjct: 12  LREMLTDAAVREGDVVTGEVTAVDENGVTVALSHGFEGHIA-PQELSAVPGTNPTEVTSV 70

Query: 139 DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 198
               G  +  VV  +D     V LS      +    +       +LL  G  +   ++ +
Sbjct: 71  ----GSQITAVVVKVDMESGQVTLSKRRAEQASAWNR-----MQELLASGEPIEVEIRDV 121

Query: 199 LENGVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 255
           ++ G++  +    +   + VD   ++N         D  + K + A+++ VDP    + L
Sbjct: 122 VKGGLVADVGVRAFIPASLVDRRFVENL--------DEFKGKTLRAKVVEVDPEKNKLIL 173

Query: 256 TLNPYLLHN-----RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD 310
           +    L        +A    +K GD+ + +     D   G  +DI          V IS+
Sbjct: 174 SRRALLEEETEAKAKALMEELKPGDVIEGTVQRLTD--FGAFVDIGGAD----GLVHISE 227

Query: 311 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 370
           ++   V    +   EG  V+VR+L      G  +  +KA+  E      +D +PG VV+G
Sbjct: 228 LSFSHVNHPSEVVHEGDRVKVRVLRVDPEAGRISLSIKAALPEPWEEHANDYQPGDVVQG 287

Query: 371 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
            V  V  FGA V+   G++ L  +  +S   +       + G E+  RVL V  +R
Sbjct: 288 VVKRVVDFGAFVELQPGLEGLVHVSQISNEHVAHASDVLQPGQEVTVRVLSVDPER 343


>gi|325674222|ref|ZP_08153911.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707]
 gi|325554902|gb|EGD24575.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707]
          Length = 528

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 188/428 (43%), Gaps = 64/428 (14%)

Query: 991  SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEW 1044
            +N P      +   ++    + V++IGS   F    D +I     G  V G + KVD + 
Sbjct: 29   TNNPSGATQHMPSNTVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDE 88

Query: 1045 ALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1100
             LL I       + ++   +    +P+E+        +G  V   VL+  KE K  RL+L
Sbjct: 89   VLLDIGYKTEGVIPSRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLIL 140

Query: 1101 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1160
               +        + +   ++    + + V G + +++ G  GL++ IG   +      E+
Sbjct: 141  SKKR-----AQYERAWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEM 193

Query: 1161 KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1220
            + +    P  G +               ++ K++E+ +      +V LS R+ L+   S 
Sbjct: 194  RRVRDLQPYVGKE---------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSE 235

Query: 1221 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1280
              S+              +  L    + +G V ++ + G F+ L   +D  V +S LS  
Sbjct: 236  VRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWK 281

Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVI 1339
            +++ P +   +G  V   VL V+   +RV ++LK +      Q      +  H +G IV 
Sbjct: 282  HIDHPSEVVEVGNEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVP 336

Query: 1340 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1399
            G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RR
Sbjct: 337  GKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVGVGDDALVKVIDIDLERRR 395

Query: 1400 ISLGMKSS 1407
            ISL +K +
Sbjct: 396  ISLSLKQA 403



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 148/377 (39%), Gaps = 50/377 (13%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 63  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 122

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 123 EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 182

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 183 RGFLPASL--------VEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 234

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 235 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 293

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 294 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 329

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 330 ---AIGQIVPGKVTKLVPFGAFVRVEE--GIEGLVHISELAERHVEVPDQVVGVGDDALV 384

Query: 789 AILDVAKAERLVDLSLK 805
            ++D+    R + LSLK
Sbjct: 385 KVIDIDLERRRISLSLK 401



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 74  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 133

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 134 KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 189

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 190 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 245

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 246 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 299

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 300 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 355

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 356 EGLVHISELAERHVEVPDQVVGVGDDALVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 413

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 414 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 445


>gi|256825135|ref|YP_003149095.1| 30S ribosomal protein S1 [Kytococcus sedentarius DSM 20547]
 gi|256688528|gb|ACV06330.1| SSU ribosomal protein S1P [Kytococcus sedentarius DSM 20547]
          Length = 492

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 176/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 33   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDIDPDEV------VVVGDTVEAL 86

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    +  +V G + +++ G  GL+V
Sbjct: 87   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEQIKEDDGVVTGSVIEVVKG--GLIV 137

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 138  DIGLRGFLPASLVEMRRVRDLQPYVG---------------QEIEAKIIELDKNRN---N 179

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   +               +++L    +  G V ++ + G F+ L 
Sbjct: 180  VVLSRRAWLEQTQSEVRTSF-------------LKELQRGQVRPGVVSSIVNFGAFVDLG 226

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK      A+Q +
Sbjct: 227  -GVDGLVHVSELSWKHIDHPGEVVEVGQEVTVEVLDVDMDRERVSLSLK------ATQED 279

Query: 1326 INNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
               L +  H +G IV G++ ++  +G F+ +E+  + GL H+SEL+E HV+  E   + G
Sbjct: 280  PWQLFARTHAIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHISELAERHVELPEQAVQVG 338

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            ++V V+++ +D E+RRISL +K +
Sbjct: 339  QEVFVRVIDIDLERRRISLSLKQA 362



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 151/361 (41%), Gaps = 31/361 (8%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           T  +   G +V+G ++ VD    ++      + + P   +S    + P +   VG  +  
Sbjct: 26  TMKNFDDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDIDPDEVVVVGDTVEA 85

Query: 418 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
            VL  + K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G+
Sbjct: 86  LVLQKEDKEGRLILSKKRAQYERAWGTIEQIKE--DDGVVTGSVIEVVKGGLIVDI--GL 141

Query: 476 QGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRV 527
           +GF P S  E+      +P    +VGQ ++ +I+      +++  SRR  L       R 
Sbjct: 142 RGFLPASLVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 197

Query: 528 SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 586
           S    ++ G +  GVV  +      V +   G   G +    L+  H++H      V++ 
Sbjct: 198 SFLKELQRGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVEV 251

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCF 644
           G E   ++L +D +   + LS K +  +  Q      +  H    +V G V  ++  G F
Sbjct: 252 GQEVTVEVLDVDMDRERVSLSLKATQEDPWQLF----ARTHAIGQIVPGKVTKLVPFGAF 307

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
           VR    + G    S+  +       +   VGQ V   ++D++ E  RI+LSLKQ+    T
Sbjct: 308 VRVEDGIEGLVHISELAERHVELPEQAVQVGQEVFVRVIDIDLERRRISLSLKQANQVGT 367

Query: 705 D 705
           D
Sbjct: 368 D 368



 Score = 41.2 bits (95), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 123/287 (42%), Gaps = 46/287 (16%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
           G +V G +  V  + V++ +   GY ++G IP+  L+  ++H      V+  G   + L+
Sbjct: 33  GDIVEGTIVKVDRDEVLLDI---GYKTEGVIPSRELS--IKHDIDPDEVVVVGDTVEALV 87

Query: 595 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
           +  +++   L+LS K +    A    +Q+  D      + VV G V  +++ G  V    
Sbjct: 88  LQKEDKEGRLILSKKRAQYERAWGTIEQIKED------DGVVTGSVIEVVKGGLIVDI-- 139

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDA 706
            L GF P S     +  DL    YVGQ + + I++++     + LS +   +   S    
Sbjct: 140 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 197

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
           SF++E    + +  ++ S  + G+       F+    ++G VH S      +S++     
Sbjct: 198 SFLKELQRGQVRPGVVSSIVNFGA-------FVDLGGVDGLVHVSE-----LSWK----- 240

Query: 767 YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
                H    G  VE G  +   +LDV      V LSLK    D ++
Sbjct: 241 -----HIDHPGEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 282


>gi|269795322|ref|YP_003314777.1| 30S ribosomal protein S1P [Sanguibacter keddieii DSM 10542]
 gi|269097507|gb|ACZ21943.1| SSU ribosomal protein S1P [Sanguibacter keddieii DSM 10542]
          Length = 496

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 173/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P E+        +G AV   
Sbjct: 38   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEV------VKVGDAVEAL 91

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 92   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGVVTGTVIEVVKG--GLIL 142

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 143  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------IEAKIIELDKNRN---N 184

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+    T S   ST + T          L    +  G V ++ + G F+ L 
Sbjct: 185  VVLSRRAWLE---QTQSEVRSTFLQT----------LQKGQVRPGVVSSIVNFGAFVDLG 231

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +  
Sbjct: 232  -GVDGLVHVSELSWKHIDHPGEVVEVGQEVTVEVLDVDFDRERVSLSLKAT-----QEDP 285

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+  HV+  E +   G+
Sbjct: 286  WQTFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAVRHVELPEQVVNVGD 344

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
             V VK++ +D E+RRISL +K +
Sbjct: 345  DVFVKVIDIDLERRRISLSLKQA 367



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  PG+  +VG E+   VL 
Sbjct: 208 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPGEVVEVGQEVTVEVLD 266

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 267 VDFDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 323

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +     P  + +VG  V  +++      RRI+LS 
Sbjct: 324 HISELAVRHVELPEQVVNVGDDVFVKVIDIDLERRRISLSL 364



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 145/375 (38%), Gaps = 46/375 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P  +  VG 
Sbjct: 27  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGD 86

Query: 501 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 557
            V+  ++       R+ LS        +   + K+     +V+G V  V    +++ +  
Sbjct: 87  AVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDIGL 146

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 147 RGFLPASL--------VEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 198

Query: 617 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S     +    V  G V +I+  G FV  LG + G    S+          +   VG
Sbjct: 199 EVRSTFLQTLQKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPGEVVEVG 257

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
           Q V   +LDV+ +  R++LSLK +       +F + H                       
Sbjct: 258 QEVTVEVLDVDFDRERVSLSLK-ATQEDPWQTFARTH----------------------- 293

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 790
               IG V+ GKV +   FG  V  E+  +    I+     H +L    V  G  +   +
Sbjct: 294 ---AIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELPEQVVNVGDDVFVKV 350

Query: 791 LDVAKAERLVDLSLK 805
           +D+    R + LSLK
Sbjct: 351 IDIDLERRRISLSLK 365



 Score = 48.5 bits (114), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V PG+  KVG  +   VL  + 
Sbjct: 38  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDAVEALVLQKED 97

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 209

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H      V++ G E   +
Sbjct: 210 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVEVGQEVTVE 263

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 264 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 319

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISELAVRHVELPEQVVNVGDDVFVKVIDIDLERRRISLSLKQA 367


>gi|54023865|ref|YP_118107.1| 30S ribosomal protein S1 [Nocardia farcinica IFM 10152]
 gi|54015373|dbj|BAD56743.1| putative ribosomal protein S1 [Nocardia farcinica IFM 10152]
          Length = 487

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 4    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 63

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 64   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 110

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 111  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 167

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 168  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 201

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 202  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNE 256

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 257  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 311

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 312  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 364



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 148/377 (39%), Gaps = 50/377 (13%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 24  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 83

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 84  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 143

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 144 RGFLPASL--------VEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 195

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 196 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 254

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 255 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 290

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 291 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 345

Query: 789 AILDVAKAERLVDLSLK 805
            ++D+    R + LSLK
Sbjct: 346 KVIDIDLERRRISLSLK 362



 Score = 47.4 bits (111), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 35  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 94

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 150

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 151 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 206

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 260

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 261 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 316

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+
Sbjct: 317 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 364


>gi|403380791|ref|ZP_10922848.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JC66]
          Length = 420

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 187/408 (45%), Gaps = 54/408 (13%)

Query: 1033 VTGYVYKVDNEWALLTISRHLKAQLFILD-SAYEPSELQEFQRRFHIGKAVTGHVLSINK 1091
            V G + KVDNE A + I       + + + SA   SE  E      +G+ +   V+ I+ 
Sbjct: 47   VKGKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASEA---VEVGQELELKVVKIDD 103

Query: 1092 EKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
            EK+ L L         S + VD     D++Q  +   + +  +++ ++ G  GLV+ +G 
Sbjct: 104  EKEKLIL---------SKRLVDSEKAWDDLQAKLESQETIEAKVADVVKG--GLVIDVG- 151

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
             L G V  + ++   V D             S Y +G+ ++ KV E+ R         LS
Sbjct: 152  -LRGFVPASMVERHFVED------------FSDY-KGRTLRMKVKELDREKNKVI---LS 194

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
             +  LD   +    ++   ++  G+ +E            G V+ +T  G F+ +   +D
Sbjct: 195  QKDVLDEEYNAKKQEILNSIEI-GQEIE------------GTVQRLTPFGVFVDIG-GID 240

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1329
              V +S ++  +VE   +    G  V  +VL V+P ++R+ +++K +      Q      
Sbjct: 241  GLVHISEMAWHHVEEASELVKEGDKVKVQVLKVDPENERISLSMKAAQPGPWEQLG---- 296

Query: 1330 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1389
             ++ VG +V G +KR+ ++G F+ I    + GL H+S++S  H+     +   G++V+VK
Sbjct: 297  DHIQVGAVVSGTVKRLVNFGAFVEI-APGVEGLVHISQISHRHIGTPHEVLEEGQEVQVK 355

Query: 1390 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRS 1437
            IL ++ +++R+SL +K +    +A        +E D   + V   N+S
Sbjct: 356  ILDLNPQEKRVSLSIKETEEAPEAPAKPEKGRKEKDNTGDYVAQPNQS 403



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 148/348 (42%), Gaps = 25/348 (7%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           VK    VKGK++ VD+  A V        + PL  +S   I +  +  +VG EL  +V+ 
Sbjct: 41  VKKDDTVKGKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASEAVEVGQELELKVVK 100

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           +  ++  +   K LV S+ A     A+   +      +  + K G  +    G++GF P 
Sbjct: 101 IDDEKEKLILSKRLVDSEKAWDDLQAKLESQETIEAKVADVVKGGLVIDV--GLRGFVPA 158

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---------DL 532
           S +      E  S Y  G+ ++ ++       R  N   + +   + E+         + 
Sbjct: 159 SMVERH-FVEDFSDYK-GRTLRMKVKE---LDREKNKVILSQKDVLDEEYNAKKQEILNS 213

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 591
           +++G  + G V  +TP  V V +   G   G +    +A H  H      ++K G +   
Sbjct: 214 IEIGQEIEGTVQRLTPFGVFVDI---GGIDGLVHISEMAWH--HVEEASELVKEGDKVKV 268

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 651
           Q+L +D E+  + LS K +     +QL     HI   +VV G V  ++  G FV     +
Sbjct: 269 QVLKVDPENERISLSMKAAQPGPWEQL---GDHIQVGAVVSGTVKRLVNFGAFVEIAPGV 325

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +    GQ V+  ILD+N +  R++LS+K++
Sbjct: 326 EGLVHISQISHRHIGTPHEVLEEGQEVQVKILDLNPQEKRVSLSIKET 373



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 140/365 (38%), Gaps = 58/365 (15%)

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
           G I K++    FV       G  P  EL      E S    VGQ ++ +++       ++
Sbjct: 49  GKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASEAVEVGQELELKVVKIDDEKEKL 108

Query: 517 NLSFMMKPTRVSEDDL-VKLGS---LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 572
            LS  +  +  + DDL  KL S   + + V DVV    +V+ V  +G+   ++   H  +
Sbjct: 109 ILSKRLVDSEKAWDDLQAKLESQETIEAKVADVVK-GGLVIDVGLRGFVPASMVERHFVE 167

Query: 573 HLE--HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL---INSAQQLPSDASHIHP 627
                    ++  +K          LD E + ++LS K  L    N+ +Q   ++  I  
Sbjct: 168 DFSDYKGRTLRMKVKE---------LDREKNKVILSQKDVLDEEYNAKKQEILNSIEI-- 216

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
              + G V  +   G FV  +G + G    S+       + S+    G  V+  +L V+ 
Sbjct: 217 GQEIEGTVQRLTPFGVFVD-IGGIDGLVHISEMAWHHVEEASELVKEGDKVKVQVLKVDP 275

Query: 688 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 747
           E  RI+LS+K +     +                 Q   H            +G+V+ G 
Sbjct: 276 ENERISLSMKAAQPGPWE-----------------QLGDH----------IQVGAVVSGT 308

Query: 748 VHESNDFGVVVSFEEHSDVYGF-----ITHHQLAGA--TVESGSVIQAAILDVAKAERLV 800
           V    +FG  V       V G      I+H  +      +E G  +Q  ILD+   E+ V
Sbjct: 309 VKRLVNFGAFVEI--APGVEGLVHISQISHRHIGTPHEVLEEGQEVQVKILDLNPQEKRV 366

Query: 801 DLSLK 805
            LS+K
Sbjct: 367 SLSIK 371


>gi|294501088|ref|YP_003564788.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
 gi|295706435|ref|YP_003599510.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
 gi|294351025|gb|ADE71354.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
 gi|294804094|gb|ADF41160.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
          Length = 378

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 6/186 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +E L    +++G V+ +T  G F+ +   +D  V +S LS   VE P      G  V  +
Sbjct: 182  LESLKEGQVLEGTVQRLTDFGAFVDVG-GVDGLVHISQLSHTRVEKPSDVVAEGDAVKVK 240

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VLSV+  + RV +++K  D+     S I+  + L  GD+V G +KR+ S+G F+ +    
Sbjct: 241  VLSVDKSTGRVSLSIK--DTLEGPWSNIS--TKLRQGDVVDGTVKRLVSFGAFVEV-LPG 295

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H+S++S  H+     +   GEKV VK+L V++++RR+SL ++    +   D    
Sbjct: 296  VEGLVHISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSIRDLEEEEQEDYGDY 355

Query: 1419 SSEEES 1424
              +EES
Sbjct: 356  ELQEES 361



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K G V++G V  +  FGA V   GGV  L  +  +S   + KP      G  +  +VL 
Sbjct: 185 LKEGQVLEGTVQRLTDFGAFVDV-GGVDGLVHISQLSHTRVEKPSDVVAEGDAVKVKVLS 243

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V   + R++++ K TL +   + +S+     D  +  G + ++   G FV    GV+G  
Sbjct: 244 VDKSTGRVSLSIKDTL-EGPWSNISTKLRQGD--VVDGTVKRLVSFGAFVEVLPGVEGLV 300

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             S++       P  +   G+ V  +++      RR++LS 
Sbjct: 301 HISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSI 341



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 42/67 (62%)

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1387
             +++L VG+ V G I +VE   +++ + N+ L G+  +SEL+  H++    + + G +V+
Sbjct: 9    EVTSLEVGETVKGTITKVEEKQVYVDVPNSKLDGIIPISELASLHIEKAGDVIQEGAEVE 68

Query: 1388 VKILKVD 1394
             K++KV+
Sbjct: 69   AKVIKVE 75


>gi|323356451|ref|YP_004222847.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
 gi|323272822|dbj|BAJ72967.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
          Length = 484

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 172/384 (44%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  + G V K+D +  LL +       + ++   +    +P+E+       ++G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEV------VNVGDHVEAL 91

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1144
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVEK------IKENDGVVTGSVIEVVKG--GLI 141

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V IG   +      EL+ +    P  G               Q ++ K+LE+ +      
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG---------------QEIEAKILELDKNRN--- 183

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            +V LS R+ L+   S + +               + +L    + +G V ++ + G F+ L
Sbjct: 184  NVVLSRRALLEQTQSESRTTF-------------LNNLHKGQVRKGTVSSIVNFGAFVDL 230

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S LS  ++E   +   +G+ V   +L V+   +RV ++LK +      + 
Sbjct: 231  G-GVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKAT-----QED 284

Query: 1325 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  H +G I  G++ ++  +G F+ + +  + GL H+SELS  HV+  E +   G
Sbjct: 285  PWQVFARTHAIGQIAPGKVTKLVPFGAFVRVAD-GIEGLVHISELSGKHVELAEQVVSVG 343

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            E+V VKI+ +D E+RRISL +K +
Sbjct: 344  EEVFVKIIDIDLERRRISLSLKQA 367



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           +++  G V KG V ++ +FGA V   GGV  L  +  +S   I    +  +VG E+   +
Sbjct: 206 NNLHKGQVRKGTVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEI 264

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +R++++ K T          ++A      I  G +TK+   G FVR  +G++G
Sbjct: 265 LEVDLDRERVSLSLKATQEDPWQVFARTHAIGQ---IAPGKVTKLVPFGAFVRVADGIEG 321

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL          +  VG+ V  +I+      RRI+LS 
Sbjct: 322 LVHISELSGKHVELAEQVVSVGEEVFVKIIDIDLERRRISLSL 364



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 155/352 (44%), Gaps = 33/352 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +++G V+ +D    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEVVNVGDHVEALVLQKED 97

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVEKIKE-NDGVVT-GSVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R +  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRTTFLNNLH 209

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  G V  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGTVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    +  G V  ++  G FVR    +
Sbjct: 264 ILEVDLDRERVSLSLKATQEDPWQVF----ARTHAIGQIAPGKVTKLVPFGAFVRVADGI 319

Query: 652 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
            G    S+ + G+  +L+ +   VG+ V   I+D++ E  RI+LSLKQ+  S
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGEEVFVKIIDIDLERRRISLSLKQANES 370


>gi|453075291|ref|ZP_21978079.1| 30S ribosomal protein S1 [Rhodococcus triatomae BKS 15-14]
 gi|452763581|gb|EME21862.1| 30S ribosomal protein S1 [Rhodococcus triatomae BKS 15-14]
          Length = 490

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 789 AILDVAKAERLVDLSLK 805
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 47.8 bits (112), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 375

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 376 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|291545113|emb|CBL18222.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
            DMAPP forming) [Ruminococcus champanellensis 18P13]
          Length = 661

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 91/160 (56%), Gaps = 6/160 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +  G VK++TS G F+ L   +D  V +S LS   ++ P +   +G ++   + +++P +
Sbjct: 484  VFTGEVKSLTSYGAFVDLG-GIDGMVHISELSWKRIKHPSEVVKVGDMLEVYIKALDPEA 542

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +  K  +     Q     L+  HVGD+V   +  +  +G F  I +  + GL H+S
Sbjct: 543  NRISLGYKKKEDNPWEQF----LAKYHVGDVVDATVVSITQFGAFAQIMD-GVDGLIHIS 597

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            +++   VDN++ I   G++V+VKI+++D EK+RIS+ M++
Sbjct: 598  QIANQRVDNVKDILSVGQQVQVKIVEIDPEKKRISISMRA 637



 Score = 48.9 bits (115), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 5/159 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            I++G V+N    G  +        +V +     G     +      K V  +++ V    
Sbjct: 397  ILKGIVQNAVKGGLIVSCD---GVRVFVPASQSGLGRDADLSVLKNKPVELKIIEVNEQR 453

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R   ++K         +         VG +  G++K + SYG F+ +   +  G+ H+S
Sbjct: 454  RRAVGSIKAVAKAQKDAARAKFWETAEVGQVFTGEVKSLTSYGAFVDLGGID--GMVHIS 511

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            ELS   + +   + + G+ ++V I  +D E  RISLG K
Sbjct: 512  ELSWKRIKHPSEVVKVGDMLEVYIKALDPEANRISLGYK 550



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 147/346 (42%), Gaps = 24/346 (6%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +  G  VKG V++V++  AIV          PL  +++    KP    + G EL   V  
Sbjct: 305 IHTGERVKGYVVSVNNNEAIVDVGTKHTGYVPLDELTDDPSKKPADLVQPGDELDLIVTK 364

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAP 480
           +      V   K  V  +L    + A+A +   I  G +    K G  V   +GV+ F P
Sbjct: 365 INDPEGYVLLSKRRV-DELVGFENIAKAKEEGTILKGIVQNAVKGGLIVSC-DGVRVFVP 422

Query: 481 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-------DLV 533
            S+ GL    + S + +  + V+ +I+  +   RR  +  +    +  +D       +  
Sbjct: 423 ASQSGLGRDADLSVLKN--KPVELKIIE-VNEQRRRAVGSIKAVAKAQKDAARAKFWETA 479

Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQ 592
           ++G + +G V  +T     V +   G   G +    L+   ++H +    V+K G   + 
Sbjct: 480 EVGQVFTGEVKSLTSYGAFVDL---GGIDGMVHISELSWKRIKHPS---EVVKVGDMLEV 533

Query: 593 LL-VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 651
            +  LD E++ + L  K    N  +Q     +  H   VV   V +I + G F + +  +
Sbjct: 534 YIKALDPEANRISLGYKKKEDNPWEQF---LAKYHVGDVVDATVVSITQFGAFAQIMDGV 590

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            G    S+  + +  ++     VGQ V+  I++++ E  RI++S++
Sbjct: 591 DGLIHISQIANQRVDNVKDILSVGQQVQVKIVEIDPEKKRISISMR 636


>gi|184155356|ref|YP_001843696.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
 gi|227515174|ref|ZP_03945223.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
 gi|260662131|ref|ZP_05863027.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
 gi|183226700|dbj|BAG27216.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
 gi|227086506|gb|EEI21818.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
 gi|260553514|gb|EEX26406.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
          Length = 410

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 94/166 (56%), Gaps = 6/166 (3%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            +L+   +V+G V  +T+ G FI L   +D  V +S +S  +V+ P     +G+ V  +VL
Sbjct: 197  ELAAGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVL 255

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            +V+P  +R+ +++K +        E        VG ++ G +KR+ S+G F+ +    + 
Sbjct: 256  NVDPERERISLSIKQTLPGPWDDIE----EKAAVGTVLTGTVKRLTSFGAFVEV-FPGVE 310

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            GL H+S++S  H+     +  AG++VKVK+L VD E++R+ L +K+
Sbjct: 311  GLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKA 356



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 1275 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1334
            S ++D YVE    +F  G+ +  +++ +EP   R+ ++ K        ++     S L  
Sbjct: 143  SMITDHYVEDL-NQFK-GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELAA 200

Query: 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1394
            GD+V G++ R+ ++G FI +   +  GL HVSE+S DHVD    +   G++VKVK+L VD
Sbjct: 201  GDVVEGKVARMTNFGAFIDLGGVD--GLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVD 258

Query: 1395 KEKRRISLGMKSS 1407
             E+ RISL +K +
Sbjct: 259  PERERISLSIKQT 271



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
           I++A   E      S++  G VV+GKV  + +FGA +   GGV  L  +  +S   + KP
Sbjct: 182 IVQAQHEEAAKKIFSELAAGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKP 240

Query: 406 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
               +VG E+  +VL V  + +RI+++ K+TL      I    A  T   +  G + ++ 
Sbjct: 241 ADVLEVGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAVGT---VLTGTVKRLT 297

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             G FV  + GV+G    S++       P+ +   GQ VK ++++  P  +R+ LS 
Sbjct: 298 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSI 354



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 140/355 (39%), Gaps = 63/355 (17%)

Query: 473 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 529
           +GV+G  P ++L   P    + +  VG  +   ++S I  S + N S+++   R+     
Sbjct: 46  SGVEGVVPANQLSTKPVDNINDVVKVGDELDLVVISKI-GSDKENGSYLLSHRRLEAMKV 104

Query: 530 --------DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 581
                   DD    G  ++  V       +VV    +G+   ++ T+H  + L       
Sbjct: 105 WNEIQKKFDD----GETITATVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK--- 157

Query: 582 SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNII 639
                G E +  ++    S N L+ +   ++ +  +  +    S +    VV G V  + 
Sbjct: 158 -----GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELAAGDVVEGKVARMT 212

Query: 640 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
             G F+  LG + G    S+         +    VGQ V+  +L+V+ E  RI+LS+KQ+
Sbjct: 213 NFGAFID-LGGVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPERERISLSIKQT 271

Query: 700 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 759
                D         +EEK A                   +G+V+ G V     FG  V 
Sbjct: 272 LPGPWDD--------IEEKAA-------------------VGTVLTGTVKRLTSFGAFV- 303

Query: 760 FEEHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 807
            E    V G      I+H  +A     +E+G  ++  +L+V    + + LS+K +
Sbjct: 304 -EVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKAL 357



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 34/197 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD+V G+++++ +   G  + +G  + G VH +E+           YD     P    + 
Sbjct: 201  GDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEIS----------YDHVD-KPADVLEV 246

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KVL +         + LS++ +L G               P   +E  E  +  
Sbjct: 247  GQEVKVKVLNVDPERE---RISLSIKQTLPG---------------PWDDIE--EKAAVG 286

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+V+P 
Sbjct: 287  TVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPE 346

Query: 1306 SKRVEVTLKTSDSRTAS 1322
             +R+ +++K  +   A 
Sbjct: 347  RQRLGLSIKALEEAPAG 363


>gi|315604243|ref|ZP_07879309.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313949|gb|EFU62000.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 478

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 184/411 (44%), Gaps = 56/411 (13%)

Query: 1004 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1057
            ++     + +++IGS+  L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
             IL            +    +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPEDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  KIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 166  -----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 199

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V  
Sbjct: 200  -LHTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 257

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 258  EVLDVDMDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 312

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL++ HV+  + + + GE+V VK++ +D E+RRISL +K +
Sbjct: 313  -GIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H+ ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 199 FLHT-LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVT 256

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G
Sbjct: 257 VEVLDVDMDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDG 313

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSL 359



 Score = 45.8 bits (107), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 33  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPEDVVAVGDQIEALVLQKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLLLSKKRAQYERAWGKIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 258

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 259 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 313

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362


>gi|154508851|ref|ZP_02044493.1| hypothetical protein ACTODO_01361 [Actinomyces odontolyticus ATCC
            17982]
 gi|293192694|ref|ZP_06609648.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
 gi|399526549|ref|ZP_10766316.1| 30S ribosomal protein S1 [Actinomyces sp. ICM39]
 gi|153798485|gb|EDN80905.1| 30S ribosomal protein S1 [Actinomyces odontolyticus ATCC 17982]
 gi|292820201|gb|EFF79198.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
 gi|398362900|gb|EJN46562.1| 30S ribosomal protein S1 [Actinomyces sp. ICM39]
          Length = 478

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 184/411 (44%), Gaps = 56/411 (13%)

Query: 1004 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1057
            ++     + +++IGS+  L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
             IL                 +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPDDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  QIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 166  -----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 199

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 200  -LHTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 257

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 258  EVLDVDMDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 312

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL++ HV+  + + + GE+V VK++ +D E+RRISL +K +
Sbjct: 313  -GIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 144/371 (38%), Gaps = 56/371 (15%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G + K++     +      +G     EL +     P  +  VG  ++  ++  
Sbjct: 31  NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQK 90

Query: 510 IPASRRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 561
                R+ LS           +  +V E+D      +V+G V  V    +++ +  +G+ 
Sbjct: 91  EDKEGRLLLSKKRAQYERAWGQIEKVKEED-----GVVTGTVIEVVKGGLILDIGLRGFL 145

Query: 562 KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPS 620
             ++        +E   V       G E + +++ LD   +N++LS +  L  +  ++ +
Sbjct: 146 PASL--------VEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 197

Query: 621 DASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
           +  H +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V 
Sbjct: 198 NFLHTLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 256

Query: 680 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 739
             +LDV+ +  R++LSLK +      A F + H                           
Sbjct: 257 VEVLDVDMDRERVSLSLKATQEDPWQA-FARTH--------------------------A 289

Query: 740 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVA 794
           IG V+ GKV +   FG  V  E+  +    I+     H +L    V+ G  +   ++D+ 
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDID 349

Query: 795 KAERLVDLSLK 805
              R + LSLK
Sbjct: 350 LERRRISLSLK 360



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 33  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLLLSKKRAQYERAWGQIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 259 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 313

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362


>gi|429729646|ref|ZP_19264303.1| 30S ribosomal protein S1 [Corynebacterium durum F0235]
 gi|429149040|gb|EKX92030.1| 30S ribosomal protein S1 [Corynebacterium durum F0235]
          Length = 491

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 182/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEDFLAAVDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+        +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPGEV------VQVGDEIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QEIEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----MEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HV+  + +    E+  VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAERHVEVPDQVVGVNEEAMVKVIDIDLERRRISLSLKQA 363



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 165/401 (41%), Gaps = 56/401 (13%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVQVGDEIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDE 255

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRF 647
              ++L +D +   + LS K ++ +  +      +  H    +V G V  ++  G FVR 
Sbjct: 256 VTVEVLDVDLDRERVSLSLKATMEDPWRVF----ARTHAVGQIVPGKVTKLVPFGAFVRV 311

Query: 648 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
              + G    S+  +       +   V +     ++D++ E  RI+LSLKQ+     D  
Sbjct: 312 EEGIEGLVHISELAERHVEVPDQVVGVNEEAMVKVIDIDLERRRISLSLKQA-----DED 366

Query: 708 FMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           + ++      K  M  S    G+ +          +W+EGF
Sbjct: 367 YTED--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|423481483|ref|ZP_17458173.1| ribosomal protein S1 [Bacillus cereus BAG6X1-2]
 gi|401144691|gb|EJQ52218.1| ribosomal protein S1 [Bacillus cereus BAG6X1-2]
          Length = 382

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 182/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI+ G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDILEGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 132/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I++G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDILEGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|396584066|ref|ZP_10484565.1| 30S ribosomal protein S1 [Actinomyces sp. ICM47]
 gi|395548355|gb|EJG15630.1| 30S ribosomal protein S1 [Actinomyces sp. ICM47]
          Length = 478

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 184/411 (44%), Gaps = 56/411 (13%)

Query: 1004 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1057
            ++     + +++IGS+  L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
             IL                 +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPDDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  KIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 166  -----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 199

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 200  -LHTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 257

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 258  EVLDVDMDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 312

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL++ HV+  + + + GE+V VK++ +D E+RRISL +K +
Sbjct: 313  -GIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 144/371 (38%), Gaps = 56/371 (15%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G + K++     +      +G     EL +     P  +  VG  ++  ++  
Sbjct: 31  NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQK 90

Query: 510 IPASRRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 561
                R+ LS           K  ++ E+D      +V+G V  V    +++ +  +G+ 
Sbjct: 91  EDKEGRLLLSKKRAQYERAWGKIEKIKEED-----GVVTGTVIEVVKGGLILDIGLRGFL 145

Query: 562 KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPS 620
             ++        +E   V       G E + +++ LD   +N++LS +  L  +  ++ +
Sbjct: 146 PASL--------VEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 197

Query: 621 DASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
           +  H +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V 
Sbjct: 198 NFLHTLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 256

Query: 680 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 739
             +LDV+ +  R++LSLK +      A F + H                           
Sbjct: 257 VEVLDVDMDRERVSLSLKATQEDPWQA-FARTH--------------------------A 289

Query: 740 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVA 794
           IG V+ GKV +   FG  V  E+  +    I+     H +L    V+ G  +   ++D+ 
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDID 349

Query: 795 KAERLVDLSLK 805
              R + LSLK
Sbjct: 350 LERRRISLSLK 360



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 33  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLLLSKKRAQYERAWGKIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 259 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 313

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362


>gi|378548483|ref|ZP_09823699.1| hypothetical protein CCH26_00290 [Citricoccus sp. CH26A]
          Length = 484

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 177/384 (46%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 35   GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEV------VAVGDNVEAL 88

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +  +++    E  +V G + +++ G  GL+V
Sbjct: 89   VLT--KEDKEGRLILSKKR-----AQYERAWGSIEKIKEEDGVVTGTVIEVVKG--GLIV 139

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 140  DIGLRGFLPASLVEMRRVRDLAPYIG---------------QELEAKIIELDKNRN---N 181

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+           L K+E      +  G V ++ + G F+ L 
Sbjct: 182  VVLSRRAWLEQTQSEVRSNF----------LHKLE---KGQVRTGTVSSIVNFGAFVDLG 228

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK      A+Q +
Sbjct: 229  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLK------ATQED 281

Query: 1326 INNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
               L +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+  H+D  E +    
Sbjct: 282  PWQLFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELASRHIDTAEQVVSVN 340

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            +++ VK++ +D E+RRISL +K +
Sbjct: 341  DELFVKVIDIDLERRRISLSLKQA 364



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 146/348 (41%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 35  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVAVGDNVEALVLTKED 94

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGSIEKIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 150

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 151 LVEMRRVRDLAP----YIGQELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSNFLHKLE 206

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + +G V  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRTGTVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 260

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 261 VLEVDMDRERVSLSLKATQEDPWQLF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 316

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 317 EGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSLKQA 364


>gi|334563708|ref|ZP_08516699.1| 30S ribosomal protein S1 [Corynebacterium bovis DSM 20582]
          Length = 488

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 183/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEDFLAAVDSTIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDEIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIG--------- 164

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 165  ------QEIEAKIIELDKHRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HVD  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAERHVDVPDQVVTVGQDAMVKVIDIDLERRRISLSLKQA 363



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+  +       +   VGQ     ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVDVPDQVVTVGQDAMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|452955266|gb|EME60665.1| 30S ribosomal protein S1 [Rhodococcus ruber BKS 20-38]
          Length = 487

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 789 AILDVAKAERLVDLSLK 805
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 47.8 bits (112), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 375

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 376 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|355574274|ref|ZP_09044117.1| hypothetical protein HMPREF1008_00094 [Olsenella sp. oral taxon 809
            str. F0356]
 gi|354818564|gb|EHF03053.1| hypothetical protein HMPREF1008_00094 [Olsenella sp. oral taxon 809
            str. F0356]
          Length = 390

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 180/391 (46%), Gaps = 64/391 (16%)

Query: 1025 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH------I 1078
             D   G  VTG V K++++  LL I    K++  I      PS     ++  +      +
Sbjct: 29   TDFDEGDLVTGTVVKIEHDEVLLDIG--FKSEGVI------PSRELSIRKDINPEDVVAL 80

Query: 1079 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKI 1136
            G  +   VL   KE K  RL+L       S K  +     + ++   + G+ V G + ++
Sbjct: 81   GDGIEALVL--QKEDKEGRLIL-------SKKRAEYERAWNRVEEKFNAGENVEGEVIEV 131

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
            + G  GL++ IG  L G +            P S  D  +   L+ +  G  ++ +V+E+
Sbjct: 132  VKG--GLILDIG--LRGFL------------PASLVDLRRVKDLNAF-LGTRIEARVIEM 174

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
             R      +V LS R  L+       S++             +  L P M ++G V ++ 
Sbjct: 175  DRN---RNNVVLSRRVVLEEARKAERSEI-------------LSKLQPGMRLKGSVSSIV 218

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
              G F+ L   +D  + +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK  
Sbjct: 219  DFGAFVDLG-GIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK-- 275

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
              +T        +    VG IV G + ++ ++G F+ + N  + GL H+SE+++ HVD  
Sbjct: 276  --QTTEDPWRTLVKKYPVGAIVEGTVTKLVTFGAFVDLGN-GVEGLVHISEMAKQHVDAP 332

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              +   G+ V+VK++++D ++RRISL MKS+
Sbjct: 333  AQVCAVGDTVQVKVMEIDLDRRRISLSMKSA 363



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S ++PGM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +V
Sbjct: 202 SKLQPGMRLKGSVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQV 260

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +RI++  K+T       ++  Y       I  G +TK+   G FV   NGV+G
Sbjct: 261 LDVDLNRERISLGLKQTTEDPWRTLVKKYPVGA---IVEGTVTKLVTFGAFVDLGNGVEG 317

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SE+       P+ +  VG  V+ ++M      RRI+LS 
Sbjct: 318 LVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDRRRISLSM 360



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 147/369 (39%), Gaps = 58/369 (15%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           +  G + KIE     +      +G  P  EL +     P  +  +G  ++  ++      
Sbjct: 36  LVTGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDINPEDVVALGDGIEALVLQKEDKE 95

Query: 514 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
            R+ LS     +     RV E      G  V G V  V    +++ +  +G+    +P  
Sbjct: 96  GRLILSKKRAEYERAWNRVEEK--FNAGENVEGEVIEVVKGGLILDIGLRGF----LPA- 148

Query: 569 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 627
            L D L     + + +    E  +++ +D   +N++LS +  L  + +   S+  S + P
Sbjct: 149 SLVD-LRRVKDLNAFLGTRIEA-RVIEMDRNRNNVVLSRRVVLEEARKAERSEILSKLQP 206

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
              + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+ 
Sbjct: 207 GMRLKGSVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDL 265

Query: 688 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 744
              RI+L LKQ+                              +E  W   V+ + +G+++
Sbjct: 266 NRERISLGLKQT------------------------------TEDPWRTLVKKYPVGAIV 295

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAE 797
           EG V +   FG  V     + V G +   ++A   V++       G  +Q  ++++    
Sbjct: 296 EGTVTKLVTFGAFVDL--GNGVEGLVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDR 353

Query: 798 RLVDLSLKT 806
           R + LS+K+
Sbjct: 354 RRISLSMKS 362


>gi|374855298|dbj|BAL58159.1| 30S ribosomal protein S1 [uncultured Acidobacteria bacterium]
          Length = 593

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 94/161 (58%), Gaps = 8/161 (4%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            V+G V+ +T  G F+ + + ++  V +S++S   V+ P +    G+ V   +  ++  ++
Sbjct: 411  VRGRVRGITDFGAFVEVEKGIEGLVHVSDISRRRVKHPSEVLKKGQEVEAIIKELDLAAR 470

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            R+ +++K  +     +       N H VGDIV G++ R  S+G F+ +      GLCH+S
Sbjct: 471  RLGLSMKELEPDPWEE-----FFNTHRVGDIVRGKVVRFASFGAFVDVGGVE--GLCHIS 523

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            ELS++HV+  E + + GE++  +IL+++ E+RRI+L  +++
Sbjct: 524  ELSDEHVEKPEDVVQIGEELDFRILRLNPEERRIALSARAA 564



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 160/388 (41%), Gaps = 47/388 (12%)

Query: 93  LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP----GLLLQG 148
           L  ++EG ++   VKS+ D+G  +  G     G L   +++       K     G ++Q 
Sbjct: 230 LSQLEEGYIVEGRVKSLADYGAFVDIG--GIDGLLHITDISWKKIAHPKEVFTVGEVIQV 287

Query: 149 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 208
            +  IDR    + L        K +  +      + L PG  V  +V  + + G  +   
Sbjct: 288 KILKIDRETGRINLGY------KQLWPNPWDTLAERLPPGSRVKGKVTRVTDYGAFVEVE 341

Query: 209 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLL- 262
               G +    L       +     +   +V   +L VD  +R + L+L     +P+ L 
Sbjct: 342 EGIEGLIHASELTWEKRPKHPSKYVSPGDEVLVEVLQVDAQNRRLSLSLRQLQPDPWRLF 401

Query: 263 ---HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 319
              H+       +V  I D    V V++G+                V +SD++   V+  
Sbjct: 402 AETHSIGARVRGRVRGITDFGAFVEVEKGI-------------EGLVHVSDISRRRVKHP 448

Query: 320 EKKYKEGSCVRVRI----LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 375
            +  K+G  V   I    L  R L GL+   L+   +E    TH   + G +V+GKV+  
Sbjct: 449 SEVLKKGQEVEAIIKELDLAARRL-GLSMKELEPDPWEEFFNTH---RVGDIVRGKVVRF 504

Query: 376 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 433
            SFGA V   GGV+ LC +  +S+  + KP    ++G EL FR+L +  + +RI ++ + 
Sbjct: 505 ASFGAFVDV-GGVEGLCHISELSDEHVEKPEDVVQIGEELDFRILRLNPEERRIALSARA 563

Query: 434 TLVKSKLAILSSYAEATDRLITHGWITK 461
                + A   +  E T R+ + G I +
Sbjct: 564 ARHDREPAY--TIGEDTGRIASLGEIAR 589



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 120/240 (50%), Gaps = 26/240 (10%)

Query: 1168 PLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1227
            P S  D  Q   L  + +G+ ++ +V++++R  +   ++ LS R+ L+   +   + +  
Sbjct: 176  PASQVDLRQVRNLEAW-KGREIEARVIKVNRRQQ---NIVLSRRALLEEEEARRRAQI-- 229

Query: 1228 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1287
                       +  L    IV+G VK++   G F+ +   +D  + ++++S   +  P++
Sbjct: 230  -----------LSQLEEGYIVEGRVKSLADYGAFVDIG-GIDGLLHITDISWKKIAHPKE 277

Query: 1288 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS-NLHVGDIVIGQIKRVE 1346
             F +G+++  ++L ++  + R+ +  K         +  + L+  L  G  V G++ RV 
Sbjct: 278  VFTVGEVIQVKILKIDRETGRINLGYKQ-----LWPNPWDTLAERLPPGSRVKGKVTRVT 332

Query: 1347 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIY-RAGEKVKVKILKVDKEKRRISLGMK 1405
             YG F+ +E   + GL H SEL+ +      + Y   G++V V++L+VD + RR+SL ++
Sbjct: 333  DYGAFVEVEE-GIEGLIHASELTWEKRPKHPSKYVSPGDEVLVEVLQVDAQNRRLSLSLR 391



 Score = 60.8 bits (146), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 3/125 (2%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
            G+ +  RV+ V    + + ++ +       ++     LS L  G IV G++K +  YG F
Sbjct: 193  GREIEARVIKVNRRQQNIVLSRRALLEEEEARRRAQILSQLEEGYIVEGRVKSLADYGAF 252

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1411
            + I   +  GL H++++S   + + + ++  GE ++VKILK+D+E  RI+LG K   + N
Sbjct: 253  VDIGGID--GLLHITDISWKKIAHPKEVFTVGEVIQVKILKIDRETGRINLGYK-QLWPN 309

Query: 1412 DADNL 1416
              D L
Sbjct: 310  PWDTL 314



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 140/315 (44%), Gaps = 26/315 (8%)

Query: 308 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG---LATGILKASAFEGLVFTHSDVKP 364
           I+D++ +++   ++ +  G  ++V+IL      G   L    L  + ++ L      + P
Sbjct: 264 ITDISWKKIAHPKEVFTVGEVIQVKILKIDRETGRINLGYKQLWPNPWDTLA---ERLPP 320

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVL 420
           G  VKGKV  V  +GA V+   G++ L    H SE    K    P K    G E++  VL
Sbjct: 321 GSRVKGKVTRVTDYGAFVEVEEGIEGLI---HASELTWEKRPKHPSKYVSPGDEVLVEVL 377

Query: 421 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
            V  +++R++++ ++ L      + +       R+   G +  I   G FV    G++G 
Sbjct: 378 QVDAQNRRLSLSLRQ-LQPDPWRLFAETHSIGARV--RGRVRGITDFGAFVEVEKGIEGL 434

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM-MKPTRVSE-DDLVKLG 536
              S++       PS +   GQ V+  I     A+RR+ LS   ++P    E  +  ++G
Sbjct: 435 VHVSDISRRRVKHPSEVLKKGQEVEAIIKELDLAARRLGLSMKELEPDPWEEFFNTHRVG 494

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLV 595
            +V G V         V V   G  +G      L+D  EH    + V++ G E D ++L 
Sbjct: 495 DIVRGKVVRFASFGAFVDV---GGVEGLCHISELSD--EHVEKPEDVVQIGEELDFRILR 549

Query: 596 LDNESSNLLLSAKYS 610
           L+ E   + LSA+ +
Sbjct: 550 LNPEERRIALSARAA 564



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 157/409 (38%), Gaps = 71/409 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           +++ ++    N++LS +  L    A++     S +    +V G V ++ + G FV  +G 
Sbjct: 199 RVIKVNRRQQNIVLSRRALLEEEEARRRAQILSQLEEGYIVEGRVKSLADYGAFVD-IGG 257

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    +     + A   + + VG+ ++  IL ++ ETGRI L  KQ   +  D     
Sbjct: 258 IDGLLHITDISWKKIAHPKEVFTVGEVIQVKILKIDRETGRINLGYKQLWPNPWDT---- 313

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
               L E++                     GS ++GKV    D+G  V  EE   + G I
Sbjct: 314 ----LAERLPP-------------------GSRVKGKVTRVTDYGAFVEVEE--GIEGLI 348

Query: 771 THHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 822
              +L            V  G  +   +L V    R + LSL+ +  D +R         
Sbjct: 349 HASELTWEKRPKHPSKYVSPGDEVLVEVLQVDAQNRRLSLSLRQLQPDPWRLFAETHSIG 408

Query: 823 KKKRKR-EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ--KFPQK 879
            + R R     D G    V   +E                  G   VSD + +  K P +
Sbjct: 409 ARVRGRVRGITDFGAFVEVEKGIE------------------GLVHVSDISRRRVKHPSE 450

Query: 880 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 939
               GQ V A +  L     A RL L +K     E       +  +++ VG +V+ ++  
Sbjct: 451 VLKKGQEVEAIIKEL--DLAARRLGLSMK-----ELEPDPWEEFFNTHRVGDIVRGKVVR 503

Query: 940 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
                  +  G G  G  HI+E++D+     E++    +IG+ +  RI+
Sbjct: 504 FASFGAFVDVG-GVEGLCHISELSDEHVEKPEDV---VQIGEELDFRIL 548



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 158/387 (40%), Gaps = 50/387 (12%)

Query: 337 RHLEGLATGILKASAFEG---LVFTHSD--VKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
           +HLE    G +K S  E    LV+   D   K G  + G++      G  V   GGV+A 
Sbjct: 117 KHLES-PDGYVKLSYAEAQRKLVWAAIDRAFKTGAPITGRITERIKGGLKVNL-GGVEAF 174

Query: 392 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL----VKSKLAILSS 445
            P   + +   V+  + +K G E+  RV+ V  + + I ++ +  L     + +  ILS 
Sbjct: 175 LPASQV-DLRQVRNLEAWK-GREIEARVIKVNRRQQNIVLSRRALLEEEEARRRAQILSQ 232

Query: 446 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 505
             E     I  G +  +  +G FV    G+ G    +++       P  ++ VG+V++ +
Sbjct: 233 LEEG---YIVEGRVKSLADYGAFVDI-GGIDGLLHITDISWKKIAHPKEVFTVGEVIQVK 288

Query: 506 IMSSIPASRRINLSF-MMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYS 561
           I+     + RINL +  + P     D L +    GS V G V  VT     V V      
Sbjct: 289 ILKIDRETGRINLGYKQLWPN--PWDTLAERLPPGSRVKGKVTRVTDYGAFVEV------ 340

Query: 562 KGTIPTEHLADHLEHATVM---------KSVIKPGYE-FDQLLVLDNESSNLLLSAKYSL 611
                 E   + L HA+ +            + PG E   ++L +D ++  L LS +  L
Sbjct: 341 ------EEGIEGLIHASELTWEKRPKHPSKYVSPGDEVLVEVLQVDAQNRRLSLSLR-QL 393

Query: 612 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 671
                +L ++   I   + V G V  I + G FV     + G    S     +    S+ 
Sbjct: 394 QPDPWRLFAETHSI--GARVRGRVRGITDFGAFVEVEKGIEGLVHVSDISRRRVKHPSEV 451

Query: 672 YYVGQSVRSNILDVNSETGRITLSLKQ 698
              GQ V + I +++    R+ LS+K+
Sbjct: 452 LKKGQEVEAIIKELDLAARRLGLSMKE 478


>gi|228990609|ref|ZP_04150574.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
 gi|228769135|gb|EEM17733.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
          Length = 382

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 176/390 (45%), Gaps = 62/390 (15%)

Query: 1029 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1088
            +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA     L 
Sbjct: 17   VGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKASDVVKLD 65

Query: 1089 INKEKKLLRLVLRPFQDG---ISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
             N E K+++L     +D    +S + VD       +Q     G++    +  I++G  GL
Sbjct: 66   QNLELKVIKL-----EDDDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNG--GL 118

Query: 1144 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1203
            VV +G   +      E+  +              +  + Y +G+ +  K++E+ R     
Sbjct: 119  VVDLGVRGFIPASLVEMHYV--------------EDFTDY-KGKTLAVKIVELDRE---K 160

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
              V LS ++ ++              +   K  E I  L    +V+G V+ +T  G F+ 
Sbjct: 161  NRVILSHKAVVEQ-------------ELESKKKEAISSLKEGDVVEGTVQRLTDFGAFVN 207

Query: 1264 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1323
            +   +D  V +S +S   VE P      G+ V  +VLSV+  ++R+ +++K      A  
Sbjct: 208  VGN-VDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADTQRISLSIKA-----AQP 261

Query: 1324 SEINNLS-NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1382
                N+S  +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   
Sbjct: 262  GPWENVSAEVKAGDIREGIVKRIVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEM 320

Query: 1383 GEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 321  GQEVKVKVLEVHAAEKRISLSIKEAVEENN 350



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   G V  L  +  +S   + +P      G  +  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GNVDGLVHISQISHDRVEQPSDVLTQGQSVKVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          +S+  +A D  I  G + +I   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVSAEVKAGD--IREGIVKRIVTFGAFVEILPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               S++       P+ +  +GQ VK +++    A +RI+LS 
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSI 342



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 134/294 (45%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + ++ ++    
Sbjct: 127  FIPASLVEMHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVEQELESKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G ++ G VH +++ +  V  P         
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVG-NVDGLVHISQISHDRVEQP--------S 229

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
            D L+   +GQ VK KVL +      T  + LS++++                  PG    
Sbjct: 230  DVLT---QGQSVKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VSAEVKAGDIREGIVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEINNLS-NLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      +++   SQ E  + S      DI+  Q+K++
Sbjct: 327  KVLEVHAAEKRISLSIKEAVEENNETEDYSQYEPTSESATFQFSDIIGEQLKKL 380



 Score = 43.9 bits (102), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 157/383 (40%), Gaps = 36/383 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G VV G V  V+    +V        + P+  ++   I K     K+   L  +V+ ++ 
Sbjct: 18  GDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVKLDQNLELKVIKLED 77

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
             + ++  K  V ++ A +    + T   +    +  I   G  V    GV+GF P S +
Sbjct: 78  DDLVLS--KRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDL--GVRGFIPASLV 133

Query: 485 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----------VK 534
            +    E  + Y  G+ +  +I+       R+ LS       V E +L          +K
Sbjct: 134 EMHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKA----VVEQELESKKKEAISSLK 187

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +V G V  +T     V V   G   G +    ++ D +E  +    V+  G     +
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNV---GNVDGLVHISQISHDRVEQPS---DVLTQGQSVKVK 241

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           +L +D ++  + LS     I +AQ  P +  ++ +    +  G V  I+  G FV  L  
Sbjct: 242 VLSVDADTQRISLS-----IKAAQPGPWENVSAEVKAGDIREGIVKRIVTFGAFVEILPG 296

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++   + +     
Sbjct: 297 VEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAVEENNETEDYS 356

Query: 711 EHFLLEEKIAMLQSSKHNGSELK 733
           ++    E  A  Q S   G +LK
Sbjct: 357 QYEPTSES-ATFQFSDIIGEQLK 378


>gi|407278428|ref|ZP_11106898.1| 30S ribosomal protein S1 [Rhodococcus sp. P14]
          Length = 487

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 789 AILDVAKAERLVDLSLK 805
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 375

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 376 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|418053089|ref|ZP_12691165.1| RNA binding S1 domain protein [Mycobacterium rhodesiae JS60]
 gi|353179450|gb|EHB45010.1| RNA binding S1 domain protein [Mycobacterium rhodesiae JS60]
          Length = 484

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 172/383 (44%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 36   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VSVGDEVEAL 89

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 90   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEALKEKDEAVKGTVIEVVKG--GLIL 140

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 141  DIGLRGFLPASLVEMRRVRDLQPYIGKE---------------IEAKIIELDKNRN---N 182

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    I +G V ++ + G F+ L 
Sbjct: 183  VVLSRRAWLEQTQSEVRSEF-------------LNQLQKGAIRKGVVSSIVNFGAFVDLG 229

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 230  -GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDP 283

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
              + +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+
Sbjct: 284  WRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVAVGD 342

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
               VK++ +D E+RRISL +K +
Sbjct: 343  DAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 143/364 (39%), Gaps = 50/364 (13%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 628
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMD 268

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 749 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 801
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 802 LSLK 805
           LSLK
Sbjct: 360 LSLK 363



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDEAGNYIFPEGFDADTNEWLEGF 407


>gi|329942819|ref|ZP_08291598.1| ribosomal protein S1 [Chlamydophila psittaci Cal10]
 gi|449071120|ref|YP_007438200.1| 30S ribosomal protein S1 [Chlamydophila psittaci Mat116]
 gi|328815079|gb|EGF85068.1| ribosomal protein S1 [Chlamydophila psittaci Cal10]
 gi|449039628|gb|AGE75052.1| 30S ribosomal protein S1 [Chlamydophila psittaci Mat116]
          Length = 584

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 73/392 (18%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KN+              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVV-------------DPSEVVNKGDEVEAIVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V+  +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K   S   ++ E         G ++ G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLSSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              IE I   G+ V  K++K+D + +++SL +K
Sbjct: 517  SKIEDIISIGDSVSAKVIKLDPDHKKVSLSVK 548



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDK 278

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  + G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGA--ELVFRVLG 421
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+  E V   + 
Sbjct: 392 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 451

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 74/477 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INIDRRNVVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   + G +  ++  G F
Sbjct: 265 LNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRITGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + GS+++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 633  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 692
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 283

Query: 693  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 752
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 316

Query: 753  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 867  SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 926
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 423  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 475

Query: 927  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 986
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 476  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 532

Query: 987  IIAKSNKPDMKKSFL 1001
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545



 Score = 41.2 bits (95), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 369 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 426
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 282

Query: 427 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 485
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 486 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 541
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 340 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 397

Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 594
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 448

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 653
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 504

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 505 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 549


>gi|254446646|ref|ZP_05060122.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
 gi|198260954|gb|EDY85262.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
          Length = 549

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 111/199 (55%), Gaps = 11/199 (5%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V G V+N+T+ G F+ L   +D  V +S++S    +  P +       +   VL V+  +
Sbjct: 358  VHGKVRNITTYGAFVELEEGIDGMVHVSDMSWTRKINHPSEVLKKADEIDAIVLDVDTNN 417

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ + +K    + A     +      +GD+V G I ++ S+G F+ +++ ++ GL H+S
Sbjct: 418  QRISLGMK----QLADDPWEDIDGRFRIGDVVSGTISKITSFGAFVELQD-HIDGLVHIS 472

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1426
            ++SE+ V+ I+ +   G +V  +++K+D+E+RR+ L +K++ +    D+ Q++ E  + E
Sbjct: 473  QISEERVEKIKDVVDIGTEVTARVIKIDREERRLGLSIKAANY----DDTQLAQETATYE 528

Query: 1427 AIEEVGS-YNRSSLLENSS 1444
             +++ G   N   +L+ ++
Sbjct: 529  NMKDGGDLMNLGDILDQAA 547



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 44/292 (15%)

Query: 1117 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1176
            +N+ T   EG IV GR+   + G  GL+V +G   +               P S  D   
Sbjct: 88   ENIITKCEEGSIVQGRVKGKVKG--GLIVAMGVDAFL--------------PASHID--- 128

Query: 1177 FDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
              P    D+  GQ    KVL+I+   +   ++ LS R  ++   ++   DL         
Sbjct: 129  IQPPKNLDQYIGQTYDYKVLKINLERK---NIVLSRRELIEEQRASKRRDL--------- 176

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +E ++P  +V+G VKN+T  G FI L   +D  + ++++S G +  P +    G+ 
Sbjct: 177  ----LERVNPGDVVKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRISHPSEMLKQGEE 231

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            +   ++ +    +RV + LK + S      E    +   VG  V G++  +  YG FI I
Sbjct: 232  IDVMIIEINREKERVSLGLKQTKSNPWQDIE----AKYPVGAKVAGKVVNLVPYGAFIEI 287

Query: 1355 ENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            E   + GL HV+E+S    +     + + G++V+  +L + K++ +ISLG++
Sbjct: 288  EE-GVEGLVHVTEMSWTKRITKPSELLKVGDEVEAVVLGIQKDEEKISLGIR 338



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 146/368 (39%), Gaps = 42/368 (11%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           V PG VVKG V  +  FGA +    G+  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 180 VNPGDVVKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRISHPSEMLKQGEEIDVMIIE 238

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           +  + +R+++  K+T       I + Y          G +  +  +G F+    GV+G  
Sbjct: 239 INREKERVSLGLKQTKSNPWQDIEAKYPVGAK---VAGKVVNLVPYGAFIEIEEGVEGLV 295

Query: 480 PRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLV---- 533
             +E+       +PS +  VG  V+  ++       +I+L    + P      D+V    
Sbjct: 296 HVTEMSWTKRITKPSELLKVGDEVEAVVLGIQKDEEKISLGIRQLDPNPW---DMVVHNY 352

Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 588
            +G+ V G V  +T     V +      +G     H++D      + H +    V+K   
Sbjct: 353 PVGAHVHGKVRNITTYGAFVEL-----EEGIDGMVHVSDMSWTRKINHPS---EVLKKAD 404

Query: 589 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGC 643
           E D  +VLD +++N  +S         +QL  D             VV G +  I   G 
Sbjct: 405 EIDA-IVLDVDTNNQRISL------GMKQLADDPWEDIDGRFRIGDVVSGTISKITSFGA 457

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           FV     + G    S+  + +   +     +G  V + ++ ++ E  R+ LS+K    + 
Sbjct: 458 FVELQDHIDGLVHISQISEERVEKIKDVVDIGTEVTARVIKIDREERRLGLSIK--AANY 515

Query: 704 TDASFMQE 711
            D    QE
Sbjct: 516 DDTQLAQE 523



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 105/475 (22%), Positives = 186/475 (39%), Gaps = 84/475 (17%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV 422
           G +V+G+V      G IV    GV A  P  H+     ++P K     +G    ++VL +
Sbjct: 97  GSIVQGRVKGKVKGGLIVAM--GVDAFLPASHID----IQPPKNLDQYIGQTYDYKVLKI 150

Query: 423 KSKRITVT-HKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQG 477
             +R  +   ++ L++ + A  S   +  +R+    +  G +  I   G F+   +G+ G
Sbjct: 151 NLERKNIVLSRRELIEEQRA--SKRRDLLERVNPGDVVKGVVKNITDFGAFIDL-DGMDG 207

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK--L 535
               +++       PS M   G+ +   I+       R++L      +   +D   K  +
Sbjct: 208 LLHITDMSWGRISHPSEMLKQGEEIDVMIIEINREKERVSLGLKQTKSNPWQDIEAKYPV 267

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM---KSVIKPGYEFDQ 592
           G+ V+G V  + P    + +            E   + L H T M   K + KP     +
Sbjct: 268 GAKVAGKVVNLVPYGAFIEI------------EEGVEGLVHVTEMSWTKRITKPS----E 311

Query: 593 LLVLDNESSNLLLS-----AKYSL-INSAQQLPSD-ASHIHP-NSVVHGYVCNIIETGCF 644
           LL + +E   ++L       K SL I      P D   H +P  + VHG V NI   G F
Sbjct: 312 LLKVGDEVEAVVLGIQKDEEKISLGIRQLDPNPWDMVVHNYPVGAHVHGKVRNITTYGAF 371

Query: 645 VRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           V     + G    S     ++ +  S+       + + +LDV++   RI+L +KQ     
Sbjct: 372 VELEEGIDGMVHVSDMSWTRKINHPSEVLKKADEIDAIVLDVDTNNQRISLGMKQLADDP 431

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG-FIIGSVIEGKVHESNDFGVVVSFEE 762
            +                             ++G F IG V+ G + +   FG  V  ++
Sbjct: 432 WED----------------------------IDGRFRIGDVVSGTISKITSFGAFVELQD 463

Query: 763 HSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFID 810
           H D  G +   Q++   VE        G+ + A ++ + + ER + LS+K    D
Sbjct: 464 HID--GLVHISQISEERVEKIKDVVDIGTEVTARVIKIDREERRLGLSIKAANYD 516



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 86/162 (53%), Gaps = 8/162 (4%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK-EFPIGKLVAGRVLSVEPL 1305
            IVQG VK     G  + +   +DA +  S++    ++ P+  +  IG+    +VL +   
Sbjct: 99   IVQGRVKGKVKGGLIVAMG--VDAFLPASHID---IQPPKNLDQYIGQTYDYKVLKINLE 153

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
             K + ++ +       +    + L  ++ GD+V G +K +  +G FI ++  +  GL H+
Sbjct: 154  RKNIVLSRRELIEEQRASKRRDLLERVNPGDVVKGVVKNITDFGAFIDLDGMD--GLLHI 211

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +++S   + +   + + GE++ V I+++++EK R+SLG+K +
Sbjct: 212  TDMSWGRISHPSEMLKQGEEIDVMIIEINREKERVSLGLKQT 253



 Score = 44.7 bits (104), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 116/566 (20%), Positives = 229/566 (40%), Gaps = 97/566 (17%)

Query: 444 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM--YHVGQV 501
           +S+ +  +  I  G IT+I ++   V           +SE GL PG E S +    +G+ 
Sbjct: 8   TSFDQLKEGSIVKGTITEIRQNEVVVDI-------GGKSE-GLVPGQEFSDLGELQIGEE 59

Query: 502 VKCRIMSSIPASRRINLSFMMKPTRVSEDDLV---KLGSLVSGVVDVVTPNAVVVYVIAK 558
           ++  +           LSF     + + ++++   + GS+V G V       ++V +   
Sbjct: 60  IEVFLEKLEDKEGNPLLSFDKAEQKKNWENIITKCEEGSIVQGRVKGKVKGGLIVAMGVD 119

Query: 559 GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS--AQ 616
            +    +P  H+   ++    +   I   Y++ ++L ++ E  N++LS +  LI    A 
Sbjct: 120 AF----LPASHI--DIQPPKNLDQYIGQTYDY-KVLKINLERKNIVLS-RRELIEEQRAS 171

Query: 617 QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 676
           +       ++P  VV G V NI + G F+   G + G    +    G+ +  S+    G+
Sbjct: 172 KRRDLLERVNPGDVVKGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRISHPSEMLKQGE 230

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            +   I+++N E  R++L LKQ+                       +S+     E K   
Sbjct: 231 EIDVMIIEINREKERVSLGLKQT-----------------------KSNPWQDIEAK--- 264

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT--------VESGSVIQA 788
            + +G+ + GKV     +G  +  EE   V G +   +++           ++ G  ++A
Sbjct: 265 -YPVGAKVAGKVVNLVPYGAFIEIEEG--VEGLVHVTEMSWTKRITKPSELLKVGDEVEA 321

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ-TVNAIVEIV 847
            +L + K E  + L +        R+ + N              D+ VH   V A V   
Sbjct: 322 VVLGIQKDEEKISLGI--------RQLDPN------------PWDMVVHNYPVGAHVHGK 361

Query: 848 KENYLVL-SLPEYNHSI-GYASVSDYN-TQKF--PQKQFLNGQSVIATVMALPSSSTAGR 902
             N     +  E    I G   VSD + T+K   P +       + A V+ + +++   R
Sbjct: 362 VRNITTYGAFVELEEGIDGMVHVSDMSWTRKINHPSEVLKKADEIDAIVLDVDTNNQ--R 419

Query: 903 LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 962
           + L +K +++              + +G +V   I++I      ++      G +HI+++
Sbjct: 420 ISLGMKQLADDPWEDI-----DGRFRIGDVVSGTISKITSFGAFVELQDHIDGLVHISQI 474

Query: 963 NDDKSNVVENLFSNFKIGQTVTARII 988
           ++++   VE +     IG  VTAR+I
Sbjct: 475 SEER---VEKIKDVVDIGTEVTARVI 497


>gi|390629414|ref|ZP_10257409.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
 gi|390485318|emb|CCF29757.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
          Length = 410

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 139/280 (49%), Gaps = 38/280 (13%)

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            DIV   +++++ G  GLVV +   + G V  + ++N  V D            L+ Y +G
Sbjct: 114  DIVEAPVTQVVKG--GLVVDV-EGVRGFVPASMIENRFVQD------------LNQY-KG 157

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            Q ++ K++EI+        + LS R  L+   S   S +               +LS   
Sbjct: 158  QTIRAKIIEINAA---DSRLILSRRDVLNEERSEALSRV-------------FNELSVGD 201

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  
Sbjct: 202  VVEGKVARMTNFGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPEK 260

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ +++K     T         +    G ++ G +KRV  +G F+ +    + GL HVS
Sbjct: 261  ERISLSIKA----TQPGPWEAAAAEAPEGTVLEGTVKRVVDFGAFVEV-FPGVEGLVHVS 315

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            ++S  H+ N   + +AG+KVKVK+L+V+ +K+R+SL +K+
Sbjct: 316  QISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSIKA 355



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 17/248 (6%)

Query: 279 QSKVVRVDRGLGLLLDIPSTPVSTPAYVT----ISDVAEEEVRKLEKKYKEGSCVRVRIL 334
           ++ V +V +G GL++D+       PA +     + D+ + + + +  K  E +    R++
Sbjct: 117 EAPVTQVVKG-GLVVDVEGVRGFVPASMIENRFVQDLNQYKGQTIRAKIIEINAADSRLI 175

Query: 335 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 394
             R        +L     E L    +++  G VV+GKV  + +FGA +   GGV  L  +
Sbjct: 176 LSRR------DVLNEERSEALSRVFNELSVGDVVEGKVARMTNFGAFIDL-GGVDGLVHV 228

Query: 395 PHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDR 452
             +S   + +P     VG E+  +VLG+  + +RI+++ K T      A  +   E T  
Sbjct: 229 SEISHERVSQPSDVLSVGEEVKVKVLGLDPEKERISLSIKATQPGPWEAAAAEAPEGT-- 286

Query: 453 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 512
            +  G + ++   G FV  + GV+G    S++       PS +   G  VK +++   P 
Sbjct: 287 -VLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLEVNPD 345

Query: 513 SRRINLSF 520
            +R++LS 
Sbjct: 346 KQRLSLSI 353



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1349
            G+ +  +++ +     R+ ++ +   ++ R+ + S + N   L VGD+V G++ R+ ++G
Sbjct: 157  GQTIRAKIIEINAADSRLILSRRDVLNEERSEALSRVFN--ELSVGDVVEGKVARMTNFG 214

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             FI +   +  GL HVSE+S + V     +   GE+VKVK+L +D EK RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPEKERISLSIKAT 270



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 30/230 (13%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL-ADHLEHAT-VMKSVIKPGYEF 590
           VK+G +V G V  +     V+  I     +G IP   L AD   +   ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELTADRDANVNDLVKVGDVLDLVV 77

Query: 591 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
              +  D E  + LLS +   + + +     AS  + + +V   V  +++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEG- 134

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS +             
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRD------------ 180

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
              L EE+   L          +      +G V+EGKV    +FG  +  
Sbjct: 181 --VLNEERSEALS---------RVFNELSVGDVVEGKVARMTNFGAFIDL 219


>gi|62185082|ref|YP_219867.1| 30S ribosomal protein S1 [Chlamydophila abortus S26/3]
 gi|62148149|emb|CAH63906.1| 30s ribosomal protein S1 [Chlamydophila abortus S26/3]
          Length = 581

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 73/392 (18%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KN+              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVV-------------DPSEVVNKGDEVEAIVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V+  +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K   S   ++ E         G ++ G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLSSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              IE I   G+ V  K++K+D + +++SL +K
Sbjct: 517  SKIEDIISIGDSVSAKVIKLDPDHKKVSLSVK 548



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDK 278

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  + G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGA--ELVFRVLG 421
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+  E V   + 
Sbjct: 392 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 451

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 74/477 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INIDRRNVVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   + G +  ++  G F
Sbjct: 265 LNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRITGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + GS+++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 633  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 692
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 283

Query: 693  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 752
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 316

Query: 753  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 867  SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 926
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 423  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 475

Query: 927  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 986
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 476  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 532

Query: 987  IIAKSNKPDMKKSFL 1001
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 369 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 426
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 282

Query: 427 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 485
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 486 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 541
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 340 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 397

Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 594
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 448

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 653
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 504

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 505 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 549


>gi|359769917|ref|ZP_09273663.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans NBRC 16320]
 gi|359312720|dbj|GAB26496.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans NBRC 16320]
          Length = 527

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 41   TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 100

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 101  SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 147

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 148  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 204

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 205  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 238

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 239  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 293

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 294  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 348

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 349  V-DEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 401



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 61  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 120

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 121 EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 180

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 181 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 232

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 233 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 291

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 292 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 327

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE        G     
Sbjct: 328 ---AIGQIVPGKVTKLVPFGAFVRVDE--GIEGLVHISELAERHVEVPDQVVAVGDDAMV 382

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 383 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 413



 Score = 47.8 bits (112), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 72  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 131

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 132 KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 187

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 188 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 243

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 244 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 297

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 298 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 353

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 354 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 408

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 409 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 443


>gi|420190098|ref|ZP_14696042.1| putative ribosomal protein S1 [Staphylococcus epidermidis NIHLM037]
 gi|394258989|gb|EJE03859.1| putative ribosomal protein S1 [Staphylococcus epidermidis NIHLM037]
          Length = 392

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 106/193 (54%), Gaps = 11/193 (5%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            ++ L+   ++ G V  +T+ G FI +   +D  V +S LS  +V++PE+   +G+ V  +
Sbjct: 188  LDSLNEGDVIDGKVARLTNFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSVGEAVKIK 246

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            V SVE  S+R+ +++K     T      N     H  D++ G + R+ ++G F+ I   +
Sbjct: 247  VKSVEKDSERISLSIKD----TLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEIA-PS 301

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK-----NDA 1413
            + GL H+SE+   H+ +   +   G++V VKIL +D++  RISL +K++  K     +DA
Sbjct: 302  VQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENVIESDA 361

Query: 1414 DNLQMSSEEESDE 1426
               Q   E+++DE
Sbjct: 362  STTQSYLEDDNDE 374



 Score = 70.5 bits (171), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 92/170 (54%), Gaps = 10/170 (5%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
            E L+ + +++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLNNDEVIEAEVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +V  ++P + RV ++ K  +       + + L +L+ GD++ G++ R+ ++G FI I   
Sbjct: 157  KVEELDPENNRVILSRKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGV 216

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  GL HVSELS +HV   E +   GE VK+K+  V+K+  RISL +K +
Sbjct: 217  D--GLVHVSELSHEHVQTPEEVVSVGEAVKIKVKSVEKDSERISLSIKDT 264



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 32/372 (8%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPNEVVKVGDEVEAY 70

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 535 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
           G     ++  ++ +S  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 240 GEAVKIKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 702
                + G    S+         ++    GQ V   IL ++ +  RI+LS+K +      
Sbjct: 297 EIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENV 356

Query: 703 -STDASFMQEHF 713
             +DAS  Q + 
Sbjct: 357 IESDASTTQSYL 368



 Score = 60.5 bits (145), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 24/251 (9%)

Query: 279 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 331
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
            IL  + +E L     KAS  + L         G V+ GKV  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219

Query: 392 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 449
             +  +S   +  P +   VG  +  +V  V+  S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKIKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 510 IPASRRINLSF 520
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347



 Score = 45.4 bits (106), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 112/289 (38%), Gaps = 55/289 (19%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPNEVVKVGDEVEA 69

Query: 593 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 643
            +     D E+     +  Y L  S +QL ++ S+      ++ + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGL 123

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
            DA          +K ++L S                G VI+GKV    +FG  +     
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGAFIDI--- 213

Query: 764 SDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V G +        H Q     V  G  ++  +  V K    + LS+K
Sbjct: 214 GGVDGLVHVSELSHEHVQTPEEVVSVGEAVKIKVKSVEKDSERISLSIK 262


>gi|399523751|ref|ZP_10764360.1| 30S ribosomal protein S1 [Atopobium sp. ICM58]
 gi|398375296|gb|EJN52731.1| 30S ribosomal protein S1 [Atopobium sp. ICM58]
          Length = 478

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 184/411 (44%), Gaps = 56/411 (13%)

Query: 1004 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1057
            ++     + +++IGS+  L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
             IL                 +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPDDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  KIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       ++ K++E+ +      +V LS R+ L+   S   ++             
Sbjct: 166  -----------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF------------ 199

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
             +  L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V  
Sbjct: 200  -LHTLQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 257

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIEN 1356
             VL V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+
Sbjct: 258  EVLDVDMDRERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED 312

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              + GL H+SEL++ HV+  + + + GE+V VK++ +D E+RRISL +K +
Sbjct: 313  -GIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 144/371 (38%), Gaps = 56/371 (15%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G + K++     +      +G     EL +     P  +  VG  ++  ++  
Sbjct: 31  NDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQK 90

Query: 510 IPASRRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 561
                R+ LS           K  +V E+D      +V+G V  V    +++ +  +G+ 
Sbjct: 91  EDKEGRLLLSKKRAQYERAWGKIEKVKEED-----GVVTGTVIEVVKGGLILDIGLRGFL 145

Query: 562 KGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPS 620
             ++        +E   V       G E + +++ LD   +N++LS +  L  +  ++ +
Sbjct: 146 PASL--------VEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 197

Query: 621 DASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 679
           +  H +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V 
Sbjct: 198 NFLHTLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 256

Query: 680 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 739
             +LDV+ +  R++LSLK +      A F + H                           
Sbjct: 257 VEVLDVDMDRERVSLSLKATQEDPWQA-FARTH--------------------------A 289

Query: 740 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVA 794
           IG V+ GKV +   FG  V  E+  +    I+     H +L    V+ G  +   ++D+ 
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDID 349

Query: 795 KAERLVDLSLK 805
              R + LSLK
Sbjct: 350 LERRRISLSLK 360



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 33  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLLLSKKRAQYERAWGKIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 259 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 313

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362


>gi|300361576|ref|ZP_07057753.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03]
 gi|300354195|gb|EFJ70066.1| 30S ribosomal protein S1 [Lactobacillus gasseri JV-V03]
          Length = 398

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 10/175 (5%)

Query: 1237 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +V+ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHVDKPSDVLKAG 244

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G FI
Sbjct: 245  QDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFI 300

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             + +  + GL HVSE++  HVD    + + G+ VKVK+L VD   RRISL +K +
Sbjct: 301  EVAD-GIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   + KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHVDKPSD 239

Query: 408 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 461
             K G ++  +V+G+   R  I+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDRHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 462 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           +   G F+   +G+QG    SE+      +PS +  VGQ VK +++S  P+ RRI+LS 
Sbjct: 293 LTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSI 351



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 10/175 (5%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            K LEK+        V+G V      G  + + +R      L+SN    YV S  K + IG
Sbjct: 103  KELEKV--FEEGKTVEGTVTGAVRGGLLVDVGTRGFLPASLISNR---YV-SDLKPY-IG 155

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            K +  ++  ++P   R+ ++ K    +   ++  N  S L VGD V G++ R+  +G F+
Sbjct: 156  KKMNLKITEIDPNKNRLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFGAFV 215

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             +   +  GL H+SE+S  HVD    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 216  DVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQT 268



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 52/281 (18%)

Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
            +IGK +   +  I+  K   RL+L   +  + +K  + + +N+ + +  GD V G++S+ 
Sbjct: 153  YIGKKMNLKITEIDPNKN--RLILS--RKDLIEKEREEAFENVASQLVVGDTVEGKVSR- 207

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
            L+G G  V   G  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  LTGFGAFVDVGG--VDGLVHISEISYKHVDKP--------SDVLKA---GQDVKVKVIGI 254

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
                     + LS++ +L                 P    E  E L    I++G VK +T
Sbjct: 255  DDD---RHRISLSIKQTL-----------------PSPFEEATEGLHEGDIIEGEVKTLT 294

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
            S G FI ++  +   V +S +++ +V+ P     +G+ V  +VLSV+P  +R+ +++K +
Sbjct: 295  SFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354

Query: 1317 D--------SRTASQSEI------NNLSNLHVGDIVIGQIK 1343
            D        SR   Q  +      +N +   +GDI+  Q+K
Sbjct: 355  DPNAAKSENSRPRRQDSVADKYMNDNDNGFALGDIIGDQLK 395



 Score = 45.1 bits (105), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 515 RINLS---FMMKPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS    + K    + +++     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             ++ G V  +   G F+     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDP 342

Query: 688 ETGRITLSLKQS 699
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354


>gi|423397689|ref|ZP_17374890.1| ribosomal protein S1 [Bacillus cereus BAG2X1-1]
 gi|401649735|gb|EJS67313.1| ribosomal protein S1 [Bacillus cereus BAG2X1-1]
          Length = 382

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVALQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    + VGDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKVGDIREGVVKRLATFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          ++   +  D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKVGD--IREGVVKRLATFGAFVEILPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 530
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 134/294 (45%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++  G     + ++            
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAAQPGPWENVAGEI------------ 271

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            K+ D+      +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 272  KVGDIR-----EGVVKRLATFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|42519016|ref|NP_964946.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533]
 gi|385826005|ref|YP_005862347.1| 30S ribosomal protein S1 [Lactobacillus johnsonii DPC 6026]
 gi|41583303|gb|AAS08912.1| 30S ribosomal protein S1 [Lactobacillus johnsonii NCC 533]
 gi|329667449|gb|AEB93397.1| 30S ribosomal protein S1 [Lactobacillus johnsonii DPC 6026]
          Length = 400

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 10/175 (5%)

Query: 1237 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +V+ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHVDKPSDVLKAG 244

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G FI
Sbjct: 245  QDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFI 300

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             + +  + GL HVSE++  HVD    + + G+ VKVK+L VD   RRISL +K +
Sbjct: 301  EVAD-GIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   + KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHVDKPSD 239

Query: 408 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 461
             K G ++  +V+G+   R  I+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDRHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 462 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           +   G F+   +G+QG    SE+      +PS +  VGQ VK +++S  P+ RRI+LS 
Sbjct: 293 LTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSI 351



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 10/175 (5%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            K LEK+        V+G V      G  + + +R      L+SN    YV S  K + IG
Sbjct: 103  KELEKV--FEEGKTVEGTVTGAVRGGLLVDVGTRGFLPASLISNR---YV-SDLKPY-IG 155

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            K +  ++  ++P   R+ ++ K    +   ++  N  S L VGD V G++ R+  +G F+
Sbjct: 156  KKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFV 215

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             +   +  GL H+SE+S  HVD    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 216  DVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQT 268



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 52/244 (21%)

Query: 1117 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1176
            +N+ + +  GD V G++S+ L+G G  V   G  + G VH +E+    V  P        
Sbjct: 189  ENVASQLVVGDTVEGKVSR-LTGFGAFVDVGG--VDGLVHISEISYKHVDKP-------- 237

Query: 1177 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1236
             D L     GQ VK KV+ I         + LS++ +L                 P    
Sbjct: 238  SDVLKA---GQDVKVKVIGIDDD---RHRISLSIKQTL-----------------PSPFE 274

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E  E L    I++G VK +TS G FI ++  +   V +S +++ +V+ P     +G+ V 
Sbjct: 275  EATEGLHEGDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVK 334

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-----------------NLSNLHVGDIVI 1339
             +VLSV+P  +R+ +++K +D   A++SE N                 N +   +GDI+ 
Sbjct: 335  VKVLSVDPSDRRISLSIKQADP-NAAKSENNSRPRRRQDSVADKYMNDNDNGFALGDIIG 393

Query: 1340 GQIK 1343
             Q+K
Sbjct: 394  DQLK 397



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 515 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS   +++  R    + V     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             ++ G V  +   G F+     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDP 342

Query: 688 ETGRITLSLKQS 699
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354


>gi|424825132|ref|ZP_18250119.1| 30S ribosomal protein S1 [Chlamydophila abortus LLG]
 gi|333410231|gb|EGK69218.1| 30S ribosomal protein S1 [Chlamydophila abortus LLG]
          Length = 581

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 177/389 (45%), Gaps = 67/389 (17%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
                G  ++I   + G +H +E+           + +   DP    ++G  V+  VL I 
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEM----------SWVKNVVDPSEVVNKGDEVEAIVLSIQ 364

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1257
            +        ++SL     G+  T  +        P  ++E  E     + V+  +KN+T+
Sbjct: 365  KD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKNLTN 404

Query: 1258 KGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
             G F+ L   ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +K  
Sbjct: 405  YGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQL 464

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
             S   ++ E         G ++ G + ++ ++G F+ ++N  + GL HVSELSE     I
Sbjct: 465  SSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFSKI 519

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            E I   G+ V  K++K+D + +++SL +K
Sbjct: 520  EDIISIGDSVSAKVIKLDPDHKKVSLSVK 548



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDK 278

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  + G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGA--ELVFRVLG 421
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+  E V   + 
Sbjct: 392 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 451

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 74/477 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INIDRRNVVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   + G +  ++  G F
Sbjct: 265 LNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRITGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + GS+++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 633  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 692
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 283

Query: 693  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 752
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 316

Query: 753  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 867  SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 926
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 423  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 475

Query: 927  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 986
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 476  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 532

Query: 987  IIAKSNKPDMKKSFL 1001
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545



 Score = 41.2 bits (95), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 369 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 426
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 282

Query: 427 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 485
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 486 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 541
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 340 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 397

Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 594
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 448

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 653
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 504

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 505 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 549


>gi|559914|emb|CAA86365.1| 30S ribosomal protein S1 [Mycobacterium leprae]
          Length = 482

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 172/382 (45%), Gaps = 58/382 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + A+   +    +P+E+        +G  V   
Sbjct: 36   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEV------VSVGDEVEAL 89

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 90   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEALKEKDEAVKGIVIEVVKG--GLIL 140

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 141  DIGLRGFLPASLVEMRRVRDLQPYIGKE---------------IEAKIIELDKN---RNN 182

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    I +G V ++ + GC +  S
Sbjct: 183  VVLSRRAWLEQTQSEVRSEF-------------LNQLQKGAIRKGVVSSIVNFGC-VCRS 228

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 229  GGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKAT-----QEDP 283

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
              + +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+
Sbjct: 284  WRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVAVGD 342

Query: 1385 KVKVKILKVDKEKRRISLGMKS 1406
               VK++ +D E+RRISL +K+
Sbjct: 343  DAMVKVIDIDLERRRISLSLKA 364



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IGK +  +++ ++     V ++ +    +T S+     L+ L  G I  G +  + ++G 
Sbjct: 165  IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGC 224

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
                 +  + GL HVSELS  H+D+   + + G +V V++L VD ++ R+SL +K++
Sbjct: 225  --VCRSGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKAT 279



 Score = 47.4 bits (111), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 144/369 (39%), Gaps = 50/369 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + + L +    V G+V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  GC  R  G + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGCVCRS-GGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLD 264

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEE--GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 798 RLVDLSLKT 806
           R + LSLK 
Sbjct: 356 RRISLSLKA 364



 Score = 43.9 bits (102), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 146/346 (42%), Gaps = 31/346 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGIVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +     V      G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGCVCR---SGGVDGLVHVSELSWKHIDHPS---EVVQVGNEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            G    S+  +       +   VG      ++D++ E  RI+LSLK
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLK 363


>gi|384450566|ref|YP_005663166.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|392376648|ref|YP_004064426.1| 30s ribosomal protein S1 [Chlamydophila psittaci RD1]
 gi|410858433|ref|YP_006974373.1| 30s ribosomal protein S1 [Chlamydia psittaci 01DC12]
 gi|313847991|emb|CBY16988.1| 30s ribosomal protein S1 [Chlamydophila psittaci RD1]
 gi|328914660|gb|AEB55493.1| ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|410811328|emb|CCO01974.1| 30s ribosomal protein S1 [Chlamydia psittaci 01DC12]
          Length = 581

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 73/392 (18%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KN+              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVV-------------DPSEVVNKGDEVEAIVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V+  +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K   S   ++ E         G ++ G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLSSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              IE I   G+ V  K++K+D + +++SL +K
Sbjct: 517  SKIEDIISIGDSVSAKVIKLDPDHKKVSLSVK 548



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDK 278

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  + G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGA--ELVFRVLG 421
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+  E V   + 
Sbjct: 392 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 451

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 74/477 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INIDRRNVVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   + G +  ++  G F
Sbjct: 265 LNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRITGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + GS+++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 633  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 692
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 283

Query: 693  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 752
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 316

Query: 753  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 867  SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 926
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 423  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 475

Query: 927  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 986
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 476  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 532

Query: 987  IIAKSNKPDMKKSFL 1001
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 369 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 426
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 282

Query: 427 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 485
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 486 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 541
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 340 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 397

Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 594
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 448

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 653
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 504

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 505 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 549


>gi|415885333|ref|ZP_11547261.1| 30S ribosomal protein S1 [Bacillus methanolicus MGA3]
 gi|387591002|gb|EIJ83321.1| 30S ribosomal protein S1 [Bacillus methanolicus MGA3]
          Length = 379

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 94/167 (56%), Gaps = 6/167 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +E L P  +++G ++ +T  G F+ +   +D  V +S LS  +VE P      G+ V  +
Sbjct: 182  LESLQPGQVLEGTIQRITDFGAFVDIG-GVDGLVHISQLSHQHVEKPSDVVEEGQKVNVK 240

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VLSV+  + R+ +++K     T      N       G ++ G +KR+ SYG F+ +  + 
Sbjct: 241  VLSVDRDNNRISLSIK----ETLPGPWTNISEKAPKGSVLEGTVKRIVSYGAFVEV-FSG 295

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + GL H+S++S  H+     + + G+KV+VK+L V++E++R+SL +K
Sbjct: 296  VEGLVHISQISHKHIGTPHEVLKEGQKVQVKVLDVNEEQQRLSLSIK 342



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            L +L  G ++ G I+R+  +G F+ I   +  GL H+S+LS  HV+    +   G+KV V
Sbjct: 182  LESLQPGQVLEGTIQRITDFGAFVDIGGVD--GLVHISQLSHQHVEKPSDVVEEGQKVNV 239

Query: 1389 KILKVDKEKRRISLGMKSS 1407
            K+L VD++  RISL +K +
Sbjct: 240  KVLSVDRDNNRISLSIKET 258



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++PG V++G +  +  FGA V   GGV  L  +  +S   + KP    + G ++  +VL 
Sbjct: 185 LQPGQVLEGTIQRITDFGAFVDI-GGVDGLVHISQLSHQHVEKPSDVVEEGQKVNVKVLS 243

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V   + RI+++ K+TL      I     + +   +  G + +I  +G FV  ++GV+G  
Sbjct: 244 VDRDNNRISLSIKETLPGPWTNISEKAPKGS---VLEGTVKRIVSYGAFVEVFSGVEGLV 300

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             S++       P  +   GQ V+ +++      +R++LS 
Sbjct: 301 HISQISHKHIGTPHEVLKEGQKVQVKVLDVNEEQQRLSLSI 341



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 22/342 (6%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 423
           G  VKGKVI V+    +       +  + P+  +S   + K      VG EL   V+ V+
Sbjct: 16  GDKVKGKVIKVEEKHVLASVENSKLDGIIPISELSSLHVEKAEDVVTVGDELELEVIKVE 75

Query: 424 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 483
            + + ++ +K   +     L    E+ +  I    +  + K G  V    GV+GF P S 
Sbjct: 76  EEALILSKRKIDAEKAWDDLEKKFESGE--IFEAEVKDVVKGGLVVDL--GVRGFVPAS- 130

Query: 484 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED----DLVKLGS 537
           L  D   E  S Y  G+ +  +I+       R+ LS   +++  ++ +     + ++ G 
Sbjct: 131 LVEDHFVEDFSDYK-GKPLTFKIVELDKEKNRLILSHRAVVEEEKIRQKQSLLESLQPGQ 189

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVL 596
           ++ G +  +T     V +   G   G +    L+   +H      V++ G + + ++L +
Sbjct: 190 VLEGTIQRITDFGAFVDI---GGVDGLVHISQLSH--QHVEKPSDVVEEGQKVNVKVLSV 244

Query: 597 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 656
           D +++ + LS K +L      +   A      SV+ G V  I+  G FV     + G   
Sbjct: 245 DRDNNRISLSIKETLPGPWTNISEKAP---KGSVLEGTVKRIVSYGAFVEVFSGVEGLVH 301

Query: 657 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            S+          +    GQ V+  +LDVN E  R++LS+K+
Sbjct: 302 ISQISHKHIGTPHEVLKEGQKVQVKVLDVNEEQQRLSLSIKE 343



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 5/77 (6%)

Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
            ++N  VGD V G++ +VE   +  ++EN+ L G+  +SELS  HV+  E +   G+++++
Sbjct: 10   VTNFQVGDKVKGKVIKVEEKHVLASVENSKLDGIIPISELSSLHVEKAEDVVTVGDELEL 69

Query: 1389 KILKVDKE-----KRRI 1400
            +++KV++E     KR+I
Sbjct: 70   EVIKVEEEALILSKRKI 86



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 38/244 (15%)

Query: 1079 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1138
            GK +T  ++ ++KEK  L L  R     + ++ +      +++ +  G ++ G I +I  
Sbjct: 145  GKPLTFKIVELDKEKNRLILSHRAV---VEEEKIRQKQSLLES-LQPGQVLEGTIQRITD 200

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
               G  V IG  + G VH ++L +  V  P    +EGQ            V  KVL + R
Sbjct: 201  F--GAFVDIGG-VDGLVHISQLSHQHVEKPSDVVEEGQK-----------VNVKVLSVDR 246

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   + LS++ +L G   TN S                E      +++G VK + S 
Sbjct: 247  D---NNRISLSIKETLPG-PWTNIS----------------EKAPKGSVLEGTVKRIVSY 286

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   ++  V +S +S  ++ +P +    G+ V  +VL V    +R+ +++K    
Sbjct: 287  GAFVEVFSGVEGLVHISQISHKHIGTPHEVLKEGQKVQVKVLDVNEEQQRLSLSIKELQE 346

Query: 1319 RTAS 1322
            R  +
Sbjct: 347  REQA 350



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 144/367 (39%), Gaps = 63/367 (17%)

Query: 457 GWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVG-----QVVKCRIMSSI 510
           G + K+E+        N  + G  P SEL      +   +  VG     +V+K    + I
Sbjct: 21  GKVIKVEEKHVLASVENSKLDGIIPISELSSLHVEKAEDVVTVGDELELEVIKVEEEALI 80

Query: 511 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
            + R+I+          + DDL K    G +    V  V    +VV +  +G+    +P 
Sbjct: 81  LSKRKID-------AEKAWDDLEKKFESGEIFEAEVKDVVKGGLVVDLGVRGF----VPA 129

Query: 568 EHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSA-QQLPSDASHI 625
             + DH +E  +  K   KP   F +++ LD E + L+LS +  +     +Q  S    +
Sbjct: 130 SLVEDHFVEDFSDYKG--KP-LTF-KIVELDKEKNRLILSHRAVVEEEKIRQKQSLLESL 185

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
            P  V+ G +  I + G FV  +G + G    S+         S     GQ V   +L V
Sbjct: 186 QPGQVLEGTIQRITDFGAFVD-IGGVDGLVHISQLSHQHVEKPSDVVEEGQKVNVKVLSV 244

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
           + +  RI+LS+K++                             G      E    GSV+E
Sbjct: 245 DRDNNRISLSIKETLP---------------------------GPWTNISEKAPKGSVLE 277

Query: 746 GKVHESNDFGVVVSFEEHSDVYGF-----ITHHQLAGA--TVESGSVIQAAILDVAKAER 798
           G V     +G  V  E  S V G      I+H  +      ++ G  +Q  +LDV + ++
Sbjct: 278 GTVKRIVSYGAFV--EVFSGVEGLVHISQISHKHIGTPHEVLKEGQKVQVKVLDVNEEQQ 335

Query: 799 LVDLSLK 805
            + LS+K
Sbjct: 336 RLSLSIK 342


>gi|334336975|ref|YP_004542127.1| RNA binding S1 domain-containing protein [Isoptericola variabilis
            225]
 gi|334107343|gb|AEG44233.1| RNA binding S1 domain protein [Isoptericola variabilis 225]
          Length = 491

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 12   VAVNDIGTEDDFLAAVDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 71

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 72   KHDVDPGEV------VAVGDVVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 118

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 119  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYVGKE------- 169

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+    T S   ST + T         
Sbjct: 170  --------IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT--------- 206

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 207  -LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 264

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  +
Sbjct: 265  DVDFDRERVSLSLKAT-----QEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED-GI 318

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+  HV+  E +   G++V VK++ +D E+RRISL +K +
Sbjct: 319  EGLVHISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQA 366



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 207 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 265

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 266 VDFDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 322

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +     P  +  VGQ V  +++      RRI+LS 
Sbjct: 323 HISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSL 363



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG  +   VL  + 
Sbjct: 37  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDVVEALVLQKED 96

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 153 LVEMRRVRDLAP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 208

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 209 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 262

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 263 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 318

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VGQ V   ++D++ E  RI+LSLKQ+
Sbjct: 319 EGLVHISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQA 366


>gi|336320735|ref|YP_004600703.1| RNA binding S1 domain protein [[Cellvibrio] gilvus ATCC 13127]
 gi|336104316|gb|AEI12135.1| RNA binding S1 domain protein [[Cellvibrio] gilvus ATCC 13127]
          Length = 492

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 173/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 39   GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEV------VKVGDEVEAL 92

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGVVTGTVIEVVKG--GLIL 143

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLGPYVGKE---------------IEAKIIELDKNRN---N 185

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+    T S   ST + T          L    +  G V ++ + G F+ L 
Sbjct: 186  VVLSRRAWLE---QTQSEVRSTFLQT----------LQKGQVRPGVVSSIVNFGAFVDLG 232

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +  
Sbjct: 233  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKAT-----QEDP 286

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+  HV+  E + + G+
Sbjct: 287  WQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAVRHVEIPEQVVQVGD 345

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
             V VK++ +D E+RRISL +K +
Sbjct: 346  DVFVKVIDIDLERRRISLSLKQA 368



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 267

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL +     P  +  VG  V  +++      RRI+LS 
Sbjct: 325 HISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSL 365



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 153/351 (43%), Gaps = 37/351 (10%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG+  KVG E+   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDEVEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 ELGL----DPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 532
            + +    D G       +VG+ ++ +I+      +++  SRR  L       R +    
Sbjct: 155 LVEMRRVRDLGP------YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQT 208

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD 591
           ++ G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E  
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVT 262

Query: 592 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFL 648
            ++L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR  
Sbjct: 263 VEVLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVE 317

Query: 649 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
             + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 318 DGIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQA 368


>gi|332287411|ref|YP_004422312.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|384451565|ref|YP_005664163.1| 30S ribosomal protein S1 [Chlamydophila psittaci 01DC11]
 gi|384452538|ref|YP_005665135.1| 30S ribosomal protein S1 [Chlamydophila psittaci 08DC60]
 gi|384453514|ref|YP_005666110.1| 30S ribosomal protein S1 [Chlamydophila psittaci C19/98]
 gi|384454493|ref|YP_005667088.1| 30S ribosomal protein S1 [Chlamydophila psittaci 02DC15]
 gi|406592329|ref|YP_006739509.1| 30S ribosomal protein S1 [Chlamydia psittaci CP3]
 gi|406593415|ref|YP_006740594.1| 30S ribosomal protein S1 [Chlamydia psittaci NJ1]
 gi|406594916|ref|YP_006741629.1| 30S ribosomal protein S1 [Chlamydia psittaci MN]
 gi|407455308|ref|YP_006734199.1| 30S ribosomal protein S1 [Chlamydia psittaci GR9]
 gi|407456694|ref|YP_006735267.1| 30S ribosomal protein S1 [Chlamydia psittaci VS225]
 gi|407458042|ref|YP_006736347.1| 30S ribosomal protein S1 [Chlamydia psittaci WS/RT/E30]
 gi|407459284|ref|YP_006737387.1| 30S ribosomal protein S1 [Chlamydia psittaci M56]
 gi|325506682|gb|ADZ18320.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|334692295|gb|AEG85514.1| 30S ribosomal protein S1 [Chlamydophila psittaci C19/98]
 gi|334693275|gb|AEG86493.1| 30S ribosomal protein S1 [Chlamydophila psittaci 01DC11]
 gi|334694250|gb|AEG87467.1| 30S ribosomal protein S1 [Chlamydophila psittaci 02DC15]
 gi|334695227|gb|AEG88443.1| 30S ribosomal protein S1 [Chlamydophila psittaci 08DC60]
 gi|405781851|gb|AFS20600.1| ribosomal protein S1 [Chlamydia psittaci GR9]
 gi|405783348|gb|AFS22096.1| ribosomal protein S1 [Chlamydia psittaci MN]
 gi|405783955|gb|AFS22702.1| ribosomal protein S1 [Chlamydia psittaci VS225]
 gi|405785172|gb|AFS23918.1| ribosomal protein S1 [Chlamydia psittaci WS/RT/E30]
 gi|405786252|gb|AFS24997.1| ribosomal protein S1 [Chlamydia psittaci M56]
 gi|405788201|gb|AFS26944.1| ribosomal protein S1 [Chlamydia psittaci CP3]
 gi|405789287|gb|AFS28029.1| ribosomal protein S1 [Chlamydia psittaci NJ1]
          Length = 501

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 73/392 (18%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 137  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 191

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 192  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 236

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KN+              DP    ++G  V+  VL
Sbjct: 237  PY--GAFIEIEEGIEGLIHVSEMSWVKNVV-------------DPSEVVNKGDEVEAIVL 281

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V+  +KN
Sbjct: 282  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKN 321

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +
Sbjct: 322  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGV 381

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K   S   ++ E         G ++ G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 382  KQLSSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 436

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              IE I   G+ V  K++K+D + +++SL +K
Sbjct: 437  SKIEDIISIGDSVSAKVIKLDPDHKKVSLSVK 468



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 53   EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 95

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 96   VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 139

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 140  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDK 198

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  + G+I ++  YG FI IE   + GL H
Sbjct: 199  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIH 253

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 254  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 306



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGA--ELVFRVLG 421
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+  E V   + 
Sbjct: 312 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 371

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 372 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 428

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 429 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 466



 Score = 42.4 bits (98), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 633  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 692
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 145  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 203

Query: 693  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 752
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 204  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 236

Query: 753  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 237  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 296

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 297  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 342

Query: 867  SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 926
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 343  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 395

Query: 927  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 986
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 396  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 452

Query: 987  IIAKSNKPDMKKSFL 1001
            +I     PD KK  L
Sbjct: 453  VIKLD--PDHKKVSL 465



 Score = 41.6 bits (96), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 369 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 426
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 144 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 202

Query: 427 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 485
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 203 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 259

Query: 486 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 541
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 260 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 317

Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 594
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 318 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 368

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 653
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 369 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 424

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 425 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 469



 Score = 40.4 bits (93), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 188/475 (39%), Gaps = 82/475 (17%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK-----VGAELVFRV 419
           G +VKG++I     G IV    G++A  P   +         KK K     VG    F++
Sbjct: 54  GSIVKGQIIRKVKGGLIVDI--GMEAFLPGSQID-------NKKIKNLDDYVGKVCEFKI 104

Query: 420 LGVK-SKRITVTHKKTLVKSKLAILSSYAEATDRLIT----HGWITKIEKHGCFVRFYNG 474
           L +   +R  V  ++ L++++   +S  AE  +++       G +  I   G F+   +G
Sbjct: 105 LKINIDRRNVVVSRRELLEAER--ISKKAELIEQITIGERRKGIVKNITDFGVFLDL-DG 161

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
           + G    +++       PS M  + Q ++  I+S      R+ L    K     ED   K
Sbjct: 162 IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKK 221

Query: 535 L--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
              G  ++G +  + P    +  I +G  +G I       H+   + +K+V+ P     +
Sbjct: 222 YPPGKRITGKIVKLLPYGAFIE-IEEGI-EGLI-------HVSEMSWVKNVVDP----SE 268

Query: 593 LLVLDNESSNLLLS-----AKYSL-INSAQQLPSD-ASHIHPNSV-VHGYVCNIIETGCF 644
           ++   +E   ++LS      K SL +   +  P D     +P  + V   + N+   G F
Sbjct: 269 VVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLHVRAEIKNLTNYGAF 328

Query: 645 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           V     + G    S     ++ +  S+ +  G  V + IL V+ E+ +ITL +KQ     
Sbjct: 329 VELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQ----- 383

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
                             L S+  N  E    E F  GSVI G V +   FG  V  +  
Sbjct: 384 ------------------LSSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQ-- 419

Query: 764 SDVYGFITHHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 811
           + + G I   +L+          +  G  + A ++ +    + V LS+K    D+
Sbjct: 420 NGIEGLIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKEYLADK 474


>gi|7579906|gb|AAF64246.1| 30S ribosomal protein S1 [Corynebacterium stationis]
          Length = 489

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELQAKEEPVTGTVIEVVKG--GLII 138

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +   +P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG---------------QELEAKIIELDKQRN---N 180

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAFLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   GE
Sbjct: 282  WRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGE 340

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
             V VK++ +D E+RRISL +K +
Sbjct: 341  DVMVKVIDIDLERRRISLSVKQA 363



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           ++G    SEL       P  + +VG+ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGEDVMVKVIDIDLERRRISLS 359



 Score = 47.4 bits (111), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEEL-QAKEEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+          +   VG+ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGEDVMVKVIDIDLERRRISLSVKQA-----DEDYTE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDSETNEWKEGF 405


>gi|418327907|ref|ZP_12939039.1| 30S ribosomal protein S1 [Staphylococcus epidermidis 14.1.R1.SE]
 gi|365232466|gb|EHM73462.1| 30S ribosomal protein S1 [Staphylococcus epidermidis 14.1.R1.SE]
          Length = 392

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 106/193 (54%), Gaps = 11/193 (5%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            ++ L+   ++ G V  +T+ G FI +   +D  V +S LS  +V++PE+   +G+ V  +
Sbjct: 188  LDSLNEGDVIDGKVARLTNFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSVGEAVIVK 246

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            V SVE  S+R+ +++K     T      N     H  D++ G + R+ ++G F+ I   +
Sbjct: 247  VKSVEKDSERISLSIKD----TLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEIA-PS 301

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK-----NDA 1413
            + GL H+SE+   H+ +   +   G++V VKIL +D++  RISL +K++  K     +DA
Sbjct: 302  VQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENVIESDA 361

Query: 1414 DNLQMSSEEESDE 1426
               Q   E+++DE
Sbjct: 362  STTQSYLEDDNDE 374



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 10/170 (5%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
            E L+ + +++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLNNDEVIEAEVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +V  ++P + RV ++ K  +       + + L +L+ GD++ G++ R+ ++G FI I   
Sbjct: 157  KVEELDPENNRVILSRKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGV 216

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  GL HVSELS +HV   E +   GE V VK+  V+K+  RISL +K +
Sbjct: 217  D--GLVHVSELSHEHVQTPEEVVSVGEAVIVKVKSVEKDSERISLSIKDT 264



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 152/375 (40%), Gaps = 38/375 (10%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQKVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 535 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 587 GYEFDQLLV----LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
           G   + ++V    ++ +S  + LS K +L    + +       H + V+ G V  +   G
Sbjct: 240 G---EAVIVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFG 293

Query: 643 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
            FV     + G    S+         ++    GQ V   IL ++ +  RI+LS+K +   
Sbjct: 294 AFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPK 353

Query: 703 ----STDASFMQEHF 713
                +DAS  Q + 
Sbjct: 354 ENVIESDASTTQSYL 368



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 24/251 (9%)

Query: 279 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 331
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
            IL  + +E L     KAS  + L         G V+ GKV  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219

Query: 392 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 449
             +  +S   +  P +   VG  ++ +V  V+  S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVIVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 510 IPASRRINLSF 520
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 113/289 (39%), Gaps = 55/289 (19%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQKVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69

Query: 593 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 643
            +     D E+     +  Y L  S +QL ++ S+      ++ + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGL 123

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
            DA          +K ++L S                G VI+GKV    +FG   +F + 
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFG---AFIDI 213

Query: 764 SDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             V G +        H Q     V  G  +   +  V K    + LS+K
Sbjct: 214 GGVDGLVHVSELSHEHVQTPEEVVSVGEAVIVKVKSVEKDSERISLSIK 262


>gi|406886795|gb|EKD33753.1| hypothetical protein ACD_75C02606G0004 [uncultured bacterium]
          Length = 576

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 169/392 (43%), Gaps = 40/392 (10%)

Query: 359 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
            S ++ G ++KG +  +  +G  +   GG+  LC +  +S   +  P K +KVG EL  +
Sbjct: 196 RSKLEEGQIIKGAITNITDYGLFIDM-GGMDGLCHITDLSWGRVSHPAKLYKVGEELEVK 254

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           VL     +    H +  +  K      +A   +R      T G +  I  +G FV    G
Sbjct: 255 VL-----KYDREHDRVSLGVKQLRDDPWATVVNRYPVGQTTKGKVVSITDYGVFVELEEG 309

Query: 475 VQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 533
           V+G    SE+        PS M  VG  V+  +++    ++RI+L   MK  + +  DLV
Sbjct: 310 VEGLIHVSEMTWSKKPRHPSKMVSVGDEVEVMVLNIETETKRISLG--MKQLQPNPWDLV 367

Query: 534 K----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
                +GS++ G +  +T   V +     G  +G     H++D     +  + +  P  +
Sbjct: 368 TENYPVGSVIEGKIKNITDFGVFI-----GIEEGIDGLIHVSD----LSWTERIKHPSEK 418

Query: 590 FDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIET 641
           + +       +L +D E+    L  K  + +  Q     A + +P+ +VV G + N+ + 
Sbjct: 419 YTKGETIQAVVLKIDKENERFSLGIKQLVPDPWQA----AYNNYPSGTVVEGEITNVTDF 474

Query: 642 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701
           G FV+    + G    S+    +       Y VG ++++ +++V+++  +I LS+K    
Sbjct: 475 GVFVKLEEGIEGLVHVSELSKDKVKTPVGMYQVGDTLKAIVINVSAKDRKIGLSVK--TL 532

Query: 702 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 733
              D     E F   EK+A   +    G  LK
Sbjct: 533 EGEDEGAAVEKFKKAEKLAAENAPSTFGDLLK 564



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 169/388 (43%), Gaps = 73/388 (18%)

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
            IG+++   +L  NK++  + +  R   +   +K      + M++ + EG I+ G I+ I 
Sbjct: 158  IGESMDFKILKFNKKRNNVVISRRAILEEERNKL----REEMRSKLEEGQIIKGAITNIT 213

Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF-------------------- 1177
                GL + +G  + G  H T+L    VS P   Y  G+                     
Sbjct: 214  DY--GLFIDMG-GMDGLCHITDLSWGRVSHPAKLYKVGEELEVKVLKYDREHDRVSLGVK 270

Query: 1178 ----DPLSG----YDEGQFVKCKVL---------EISRTVRGTFHV-ELSLRSSLDGMSS 1219
                DP +     Y  GQ  K KV+         E+   V G  HV E++        S 
Sbjct: 271  QLRDDPWATVVNRYPVGQTTKGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSK 330

Query: 1220 TNSSD-----LSTDVDTPGKHLE-KIEDLSPN------------MIVQGYVKNVTSKGCF 1261
              S       +  +++T  K +   ++ L PN             +++G +KN+T  G F
Sbjct: 331  MVSVGDEVEVMVLNIETETKRISLGMKQLQPNPWDLVTENYPVGSVIEGKIKNITDFGVF 390

Query: 1262 IMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDS 1318
            I +   +D  + +S+LS    ++ P +++  G+ +   VL ++  ++R  + +K    D 
Sbjct: 391  IGIEEGIDGLIHVSDLSWTERIKHPSEKYTKGETIQAVVLKIDKENERFSLGIKQLVPDP 450

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
              A+       +N   G +V G+I  V  +G+F+ +E   + GL HVSELS+D V     
Sbjct: 451  WQAA------YNNYPSGTVVEGEITNVTDFGVFVKLEE-GIEGLVHVSELSKDKVKTPVG 503

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            +Y+ G+ +K  ++ V  + R+I L +K+
Sbjct: 504  MYQVGDTLKAIVINVSAKDRKIGLSVKT 531



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/416 (18%), Positives = 172/416 (41%), Gaps = 73/416 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++L  + + +N+++S +  L     +L  +  S +    ++ G + NI + G F+  +G 
Sbjct: 165 KILKFNKKRNNVVISRRAILEEERNKLREEMRSKLEEGQIIKGAITNITDYGLFID-MGG 223

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    +    G+ +  +K Y VG+ +   +L  + E  R++L +KQ            
Sbjct: 224 MDGLCHITDLSWGRVSHPAKLYKVGEELEVKVLKYDREHDRVSLGVKQ------------ 271

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
              L ++  A +            V  + +G   +GKV    D+GV V  EE   V G I
Sbjct: 272 ---LRDDPWATV------------VNRYPVGQTTKGKVVSITDYGVFVELEEG--VEGLI 314

Query: 771 THHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 822
              ++  +         V  G  ++  +L++    + + L +K +  + +     N    
Sbjct: 315 HVSEMTWSKKPRHPSKMVSVGDEVEVMVLNIETETKRISLGMKQLQPNPWDLVTENYPVG 374

Query: 823 -----KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 877
                K K   +    +G+ + ++ ++ +                   + +S     K P
Sbjct: 375 SVIEGKIKNITDFGVFIGIEEGIDGLIHV-------------------SDLSWTERIKHP 415

Query: 878 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 937
            +++  G+++ A V+ +   +   R  L +K +      ++      ++Y  G++V+ EI
Sbjct: 416 SEKYTKGETIQAVVLKIDKENE--RFSLGIKQLVPDPWQAAY-----NNYPSGTVVEGEI 468

Query: 938 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 993
           T +    + +K   G  G +H++E++ DK   V+     +++G T+ A +I  S K
Sbjct: 469 TNVTDFGVFVKLEEGIEGLVHVSELSKDK---VKTPVGMYQVGDTLKAIVINVSAK 521


>gi|184200835|ref|YP_001855042.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201]
 gi|183581065|dbj|BAG29536.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201]
          Length = 493

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 188/417 (45%), Gaps = 68/417 (16%)

Query: 1004 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1053
            ++     + V++IG++  F    D +I     G  V G V KVD +  LL I       +
Sbjct: 1    MTTTTQQVAVNDIGTEEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVI 60

Query: 1054 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1113
             ++   +     P ++        +G  V   VL   KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDINPDDV------VAVGDEVEALVLP--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1114 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            I        I E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------IKEDDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
                          Q ++ K++E+ +      +V LS R+ L+   S   ++        
Sbjct: 164  --------------QQLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRANF------- 199

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
                  ++ L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 200  ------LQQLQKGQVRTGTVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGL 1350
            + V   VL V+   +RV ++LK      A+Q +   L +  H +G +V G++ ++  +G 
Sbjct: 253  QEVTVEVLDVDMDRERVSLSLK------ATQEDPWQLFARTHALGQVVPGKVTKLVPFGA 306

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            F+ +E+  + GL H+SEL++ HVD  E +    E++ VK++ +D ++RRISL +K +
Sbjct: 307  FVRVED-GIEGLVHISELAQRHVDMAEQVVSVNEELFVKVIDIDLDRRRISLSLKQA 362



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 145/348 (41%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    + P     VG E+   VL  + 
Sbjct: 33  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDINPDDVVAVGDEVEALVLPKED 92

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKIKE--DDGVVTGTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRANFLQQLQ 204

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + +G V  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRTGTVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 259 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 314

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   V + +   ++D++ +  RI+LSLKQ+
Sbjct: 315 EGLVHISELAQRHVDMAEQVVSVNEELFVKVIDIDLDRRRISLSLKQA 362



 Score = 41.2 bits (95), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 40/284 (14%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL- 593
           G LV G V  V  + V++ +   GY ++G IP+  L+  ++H      V+  G E + L 
Sbjct: 33  GDLVEGTVVKVDRDEVLLDI---GYKTEGVIPSRELS--IKHDINPDDVVAVGDEVEALV 87

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLT 652
           L  +++   L+LS K +    A     D   I   + VV G V  +++ G  +     L 
Sbjct: 88  LPKEDKEGRLILSKKRAQYERAW---GDIEKIKEDDGVVTGTVIEVVKGGLILDI--GLR 142

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDASFM 709
           GF P S     +  DL+   Y+GQ + + I++++     + LS +   +   S   A+F+
Sbjct: 143 GFLPASLVEMRRVRDLAP--YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRANFL 200

Query: 710 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 769
           Q+    + +   + S  + G+       F+    ++G VH S      +S++        
Sbjct: 201 QQLQKGQVRTGTVSSIVNFGA-------FVDLGGVDGLVHVSE-----LSWK-------- 240

Query: 770 ITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
             H       VE G  +   +LDV      V LSLK    D ++
Sbjct: 241 --HIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 282


>gi|378718135|ref|YP_005283024.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans VH2]
 gi|375752838|gb|AFA73658.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans VH2]
          Length = 527

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 41   TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 100

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 101  SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 147

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 148  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 204

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 205  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 238

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 239  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 293

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 294  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 348

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            ++   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 349  VDE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 401



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 61  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 120

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 121 EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 180

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 181 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 232

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 233 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 291

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 292 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 327

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE        G     
Sbjct: 328 ---AIGQIVPGKVTKLVPFGAFVRVDE--GIEGLVHISELAERHVEVPDQVVAVGDDAMV 382

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 383 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 413



 Score = 47.4 bits (111), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 72  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 131

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 132 KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 187

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 188 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 243

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 244 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 297

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 298 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 353

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 354 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 408

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 409 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 443


>gi|433462997|ref|ZP_20420565.1| 30S ribosomal protein S1 [Halobacillus sp. BAB-2008]
 gi|432188134|gb|ELK45352.1| 30S ribosomal protein S1 [Halobacillus sp. BAB-2008]
          Length = 380

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 194/428 (45%), Gaps = 77/428 (17%)

Query: 1028 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1087
            S G  VTG V K++++  L+ +   ++  + I       SEL       H+ KA     +
Sbjct: 15   SAGDIVTGKVVKIEDKQVLVDVGYKVEGIVPI-------SELS----SLHVEKA--SDAV 61

Query: 1088 SINKEKKLLRLVLRPFQDG---ISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1142
            S   E   L L ++  +D    +S + VD      +++     G+I    +  ++ G  G
Sbjct: 62   SEGDE---LTLQVKKVEDDEIVLSKRAVDADKAWQDLEAKFESGEIFEAEVKDVVKG--G 116

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
            LVV IG  L G +  + ++   V D               Y +G+ +  KV+E+ R    
Sbjct: 117  LVVDIG--LRGFIPASLVETYYVED------------FEDY-KGRTLSLKVVELDRE--- 158

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
               V LS R+ ++   S              K  E ++ L    +++G V+ +T  G F+
Sbjct: 159  QNRVILSHRAVVEEEESV-------------KKQEVLQSLEEGQVIEGTVQRLTDFGAFV 205

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
             L   +D  V +S LS  +VE        G+ V  +VLSV+  ++R+ ++LK +  +   
Sbjct: 206  NLG-GIDGLVHISQLSHQHVEKASDVVEEGQAVKVKVLSVDRDNERISLSLKAT--QPGP 262

Query: 1323 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1382
              +I   S +  GD++ G ++R+ S+G F+ +    + GL H+S++S  H+   + +   
Sbjct: 263  WHDIQ--SKVSSGDVLEGTVRRLVSFGAFVEV-FPGVEGLVHISQISNRHIGTPDEVLDE 319

Query: 1383 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLEN 1442
            G++V+VK+L VD+  +R+SL MK               E E DE   ++  Y +    +N
Sbjct: 320  GQQVEVKVLDVDENAKRLSLSMK---------------ELERDEERADIQQYEKED--DN 362

Query: 1443 SSVAVQDM 1450
            S  ++ DM
Sbjct: 363  SGFSLSDM 370



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 136/350 (38%), Gaps = 37/350 (10%)

Query: 364 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 423
            G +V GKV+ ++    +V     V+ + P+  +S   + K       G EL  +V  V+
Sbjct: 16  AGDIVTGKVVKIEDKQVLVDVGYKVEGIVPISELSSLHVEKASDAVSEGDELTLQVKKVE 75

Query: 424 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 483
              I ++ +          L +  E+ +  I    +  + K G  V    G++GF P S 
Sbjct: 76  DDEIVLSKRAVDADKAWQDLEAKFESGE--IFEAEVKDVVKGGLVVDI--GLRGFIPASL 131

Query: 484 LGLDPGCEPSSMYHVGQV--VKCRIMS--SIPASRRINLSFMMKPTRVSEDDLVKL---- 535
           +           Y+V      K R +S   +   R  N   +     V E++ VK     
Sbjct: 132 V---------ETYYVEDFEDYKGRTLSLKVVELDREQNRVILSHRAVVEEEESVKKQEVL 182

Query: 536 -----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
                G ++ G V  +T     V +   G   G +    L+  H+E A+    V++ G  
Sbjct: 183 QSLEEGQVIEGTVQRLTDFGAFVNL---GGIDGLVHISQLSHQHVEKAS---DVVEEGQA 236

Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 648
              ++L +D ++  + LS K +       + S  S      V+ G V  ++  G FV   
Sbjct: 237 VKVKVLSVDRDNERISLSLKATQPGPWHDIQSKVS---SGDVLEGTVRRLVSFGAFVEVF 293

Query: 649 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
             + G    S+  +       +    GQ V   +LDV+    R++LS+K+
Sbjct: 294 PGVEGLVHISQISNRHIGTPDEVLDEGQQVEVKVLDVDENAKRLSLSMKE 343



 Score = 48.1 bits (113), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V++G V  +  FGA V   GG+  L  +  +S   + K     + G  +  +VL 
Sbjct: 185 LEEGQVIEGTVQRLTDFGAFVNL-GGIDGLVHISQLSHQHVEKASDVVEEGQAVKVKVLS 243

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V   ++RI+++ K T       I S  +      +  G + ++   G FV  + GV+G  
Sbjct: 244 VDRDNERISLSLKATQPGPWHDIQSKVSSGD---VLEGTVRRLVSFGAFVEVFPGVEGLV 300

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             S++       P  +   GQ V+ +++     ++R++LS 
Sbjct: 301 HISQISNRHIGTPDEVLDEGQQVEVKVLDVDENAKRLSLSM 341



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 2/148 (1%)

Query: 306 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 365
           V IS ++ + V K     +EG  V+V++L         +  LKA+         S V  G
Sbjct: 214 VHISQLSHQHVEKASDVVEEGQAVKVKVLSVDRDNERISLSLKATQPGPWHDIQSKVSSG 273

Query: 366 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 423
            V++G V  + SFGA V+   GV+ L  +  +S   I  P +    G ++  +VL V   
Sbjct: 274 DVLEGTVRRLVSFGAFVEVFPGVEGLVHISQISNRHIGTPDEVLDEGQQVEVKVLDVDEN 333

Query: 424 SKRITVTHKKTLVKSKLAILSSYAEATD 451
           +KR++++ K+     + A +  Y +  D
Sbjct: 334 AKRLSLSMKELERDEERADIQQYEKEDD 361



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 62/287 (21%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQL 593
           G +V+G V  +    V+V V   GY  +G +P   L+  H+E A+     +  G E   L
Sbjct: 17  GDIVTGKVVKIEDKQVLVDV---GYKVEGIVPISELSSLHVEKAS---DAVSEGDEL-TL 69

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
            V   E   ++LS +    + A Q     +      +    V ++++ G  V     L G
Sbjct: 70  QVKKVEDDEIVLSKRAVDADKAWQDLE--AKFESGEIFEAEVKDVVKGGLVVDI--GLRG 125

Query: 654 FAPRSKAVDGQRADLSKTYYV-------GQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
           F P         A L +TYYV       G+++   +++++ E  R+ LS  ++     ++
Sbjct: 126 FIP---------ASLVETYYVEDFEDYKGRTLSLKVVELDREQNRVILS-HRAVVEEEES 175

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
              QE         +LQS +              G VIEG V    DFG  V+      +
Sbjct: 176 VKKQE---------VLQSLEE-------------GQVIEGTVQRLTDFGAFVNL---GGI 210

Query: 767 YGFITHHQL-------AGATVESGSVIQAAILDVAKAERLVDLSLKT 806
            G +   QL       A   VE G  ++  +L V +    + LSLK 
Sbjct: 211 DGLVHISQLSHQHVEKASDVVEEGQAVKVKVLSVDRDNERISLSLKA 257


>gi|407454002|ref|YP_006733110.1| 30S ribosomal protein S1 [Chlamydia psittaci 84/55]
 gi|407460660|ref|YP_006738435.1| 30S ribosomal protein S1 [Chlamydia psittaci WC]
 gi|405780761|gb|AFS19511.1| ribosomal protein S1 [Chlamydia psittaci 84/55]
 gi|405787394|gb|AFS26138.1| ribosomal protein S1 [Chlamydia psittaci WC]
          Length = 504

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 73/392 (18%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 137  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 191

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 192  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 236

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KN+              DP    ++G  V+  VL
Sbjct: 237  PY--GAFIEIEEGIEGLIHVSEMSWVKNVV-------------DPSEVVNKGDEVEAIVL 281

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V+  +KN
Sbjct: 282  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKN 321

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +
Sbjct: 322  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGV 381

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K   S   ++ E         G ++ G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 382  KQLSSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 436

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              IE I   G+ V  K++K+D + +++SL +K
Sbjct: 437  SKIEDIISIGDSVSAKVIKLDPDHKKVSLSVK 468



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 53   EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 95

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 96   VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 139

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 140  GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDK 198

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  + G+I ++  YG FI IE   + GL H
Sbjct: 199  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIH 253

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 254  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 306



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGA--ELVFRVLG 421
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+  E V   + 
Sbjct: 312 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 371

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 372 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 428

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 429 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 466



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 633  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 692
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 145  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 203

Query: 693  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 752
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 204  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 236

Query: 753  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 237  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 296

Query: 807  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 297  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 342

Query: 867  SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 926
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 343  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 395

Query: 927  YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 986
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 396  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 452

Query: 987  IIAKSNKPDMKKSFL 1001
            +I     PD KK  L
Sbjct: 453  VIKLD--PDHKKVSL 465



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 369 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 426
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 144 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 202

Query: 427 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 485
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 203 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 259

Query: 486 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 541
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 260 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 317

Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 594
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 318 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 368

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 653
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 369 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 424

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 425 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 469


>gi|89069005|ref|ZP_01156386.1| 30S ribosomal protein S1 [Oceanicola granulosus HTCC2516]
 gi|89045374|gb|EAR51439.1| 30S ribosomal protein S1 [Oceanicola granulosus HTCC2516]
          Length = 561

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 175/408 (42%), Gaps = 60/408 (14%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1085
            GQ V G V  +    A + +   +   L + D A+     PSE+        IG+ V   
Sbjct: 197  GQAVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEI------LSIGETVKVQ 249

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDK-TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1144
            V+ INKE   + L ++  QD   D  TV    D++ T         GR++ I     G  
Sbjct: 250  VIKINKETHRISLGMKQLQDDPWDTVTVKYPLDSVHT---------GRVTNITDY--GAF 298

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V++ P + G VH +E+           + +    P       Q V+  VLEI    R   
Sbjct: 299  VELEPGVEGLVHVSEMS----------WTKKNVHPGKIVSTSQEVEVMVLEIDEAKR--- 345

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
                  R SL G+  T  +      +T   H E  E       V+G VKN+T  G F+ L
Sbjct: 346  ------RVSL-GLKQTMRNPWEVFAET---HPEGTE-------VEGEVKNITEFGLFVGL 388

Query: 1265 SRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1323
               +D  V LS+L+ +G  E    ++  G +V  +VL V+   +R+ +++K  D    ++
Sbjct: 389  EGDIDGMVHLSDLTWEGRGEDVIGDYRKGDVVKAKVLEVDTDKERISLSIKALDGDPFAE 448

Query: 1324 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
            +    +  +  G ++   + ++E  G  I +E   +      S+LS D  +     ++ G
Sbjct: 449  A----VGGVKRGSVITVNVTKIEDGG--IEVEYEGMKSFIRRSDLSRDRSEQRPERFQPG 502

Query: 1384 EKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEV 1431
            +KV V++  +D + RR+ L +K+     + + +Q     +S  ++ ++
Sbjct: 503  DKVDVRVTNIDPKTRRLGLSIKAREIAEEKEAVQQYGSSDSGASLGDI 550



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 4/89 (4%)

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
            +SR   ++E+  + NLH G  V G +K +  YG F+ +   +  GL HV++++   V++ 
Sbjct: 181  ESRAEQRAEV--IGNLHEGQAVDGVVKNITEYGAFVDLGGVD--GLLHVTDMAWRRVNHP 236

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              I   GE VKV+++K++KE  RISLGMK
Sbjct: 237  SEILSIGETVKVQVIKINKETHRISLGMK 265



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 11/177 (6%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            +  E I +L     V G VKN+T  G F+ L   +D  + +++++   V  P +   IG+
Sbjct: 186  QRAEVIGNLHEGQAVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEILSIGE 244

Query: 1294 LVAGRVLSVEPLSKRVEVTLKT-SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
             V  +V+ +   + R+ + +K   D    + +    L ++H      G++  +  YG F+
Sbjct: 245  TVKVQVIKINKETHRISLGMKQLQDDPWDTVTVKYPLDSVHT-----GRVTNITDYGAFV 299

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             +E   + GL HVSE+S     N+    I    ++V+V +L++D+ KRR+SLG+K +
Sbjct: 300  ELE-PGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVEVMVLEIDEAKRRVSLGLKQT 354



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 35/221 (15%)

Query: 592 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           Q+L +D    N+++S +  L  S A+Q      ++H    V G V NI E G FV  LG 
Sbjct: 160 QILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLHEGQAVDGVVKNITEYGAFVD-LGG 218

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    +     +    S+   +G++V+  ++ +N ET RI+L +KQ            
Sbjct: 219 VDGLLHVTDMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQ------------ 266

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 764
                      LQ    +   +K    + + SV  G+V    D+G  V  E       H 
Sbjct: 267 -----------LQDDPWDTVTVK----YPLDSVHTGRVTNITDYGAFVELEPGVEGLVHV 311

Query: 765 DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
               +   +   G  V +   ++  +L++ +A+R V L LK
Sbjct: 312 SEMSWTKKNVHPGKIVSTSQEVEVMVLEIDEAKRRVSLGLK 352



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 107/472 (22%), Positives = 177/472 (37%), Gaps = 69/472 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK--KFKVGAELVFRVLGV 422
           G VVKG+VIAV++  AI+     ++    L      E   PG+  +  VG E+   +  V
Sbjct: 26  GSVVKGRVIAVEAGQAIIDVGYKMEGRVDLK-----EFANPGEAPEIGVGDEVEVYLRNV 80

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           ++ R      + + + + A         D     G I    K G F     G   F P S
Sbjct: 81  ENARGEAVISREMARREEAWDRLEKAYADEERVEGAIFGRVK-GGFTVDLGGAVAFLPGS 139

Query: 483 ELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 538
           ++ + P  +   +  + Q  +     R   +I  SRR  L       R      +  G  
Sbjct: 140 QVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLHEGQA 199

Query: 539 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHATVMKSVIKPGYEFDQLL 594
           V GVV  +T     V +   G   G +    +A    +H      +   +K      Q++
Sbjct: 200 VDGVVKNITEYGAFVDL---GGVDGLLHVTDMAWRRVNHPSEILSIGETVKV-----QVI 251

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHI-HPNSVVH-GYVCNIIETGCFVRFLGRLT 652
            ++ E+  + L  K       Q  P D   + +P   VH G V NI + G FV     + 
Sbjct: 252 KINKETHRISLGMK-----QLQDDPWDTVTVKYPLDSVHTGRVTNITDYGAFVELEPGVE 306

Query: 653 GFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
           G    S+ +   +     K     Q V   +L+++    R++L LKQ+  +  +  F + 
Sbjct: 307 GLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDEAKRRVSLGLKQTMRNPWEV-FAET 365

Query: 712 HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 771
           H                            G+ +EG+V    +FG+ V  E   D+ G + 
Sbjct: 366 HPE--------------------------GTEVEGEVKNITEFGLFVGLE--GDIDGMVH 397

Query: 772 HHQLA----GATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 815
              L     G  V      G V++A +L+V   +  + LS+K +  D F EA
Sbjct: 398 LSDLTWEGRGEDVIGDYRKGDVVKAKVLEVDTDKERISLSIKALDGDPFAEA 449


>gi|218133764|ref|ZP_03462568.1| hypothetical protein BACPEC_01633 [[Bacteroides] pectinophilus ATCC
            43243]
 gi|217991139|gb|EEC57145.1| putative ribosomal protein S1 [[Bacteroides] pectinophilus ATCC
            43243]
          Length = 365

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 184/402 (45%), Gaps = 81/402 (20%)

Query: 1069 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT--VDISNDNMQTFIHEG 1126
            L+E  +  H G+ V G V+S+ +++ +L +  +   DGI  ++   +  N +++T + EG
Sbjct: 10   LEESFKTIHTGEVVDGTVISVKEDEIVLNIGYKA--DGIITRSEYTNKPNVDLRTVVSEG 67

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            D +  ++ K+  G             G+V  T  + +         +EG       Y+  
Sbjct: 68   DTMKAKVLKVNDG------------DGQVLLTYRRLVA--------EEGNKKLEEAYNNK 107

Query: 1187 QFVKCKVLEISRTVRGTFHVELS-----LRSSLDGMSSTNSSDLS-----------TDVD 1230
            + +  KV    + + G   V +      + +SL  +S T   DL+           T+ +
Sbjct: 108  EVITAKV---DKAIPGGLSVVIDEARVFIPASL--ISDTYEKDLTKFEGQEVSFVITEYN 162

Query: 1231 TP-------------GKHLEKIEDLSPNM----IVQGYVKNVTSKGCFIMLSRKLDAKVL 1273
                            K  E+ E L  ++     ++G VKNVT  G FI L   +D  + 
Sbjct: 163  PKKRRIIGDCKQLILAKKAEQAEKLLASIKEGDTIEGTVKNVTDFGAFIDLG-GVDGLLH 221

Query: 1274 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1333
            +S +S G  E+P+K F +G  V   V  +     ++ ++LK  D    + +         
Sbjct: 222  ISEMSWGRTENPKKVFKVGDSVKAFVKEIN--GSKIALSLKYPDQNPWTDAP----EKYA 275

Query: 1334 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1393
            VG++V G++ R+  +G F+ +E T +  L HVS+++ +HVD    + + G++++ K++ +
Sbjct: 276  VGNVVKGKVARMTDFGAFVELE-TGVDALLHVSQIALEHVDKPSDVLKIGQEIEAKVVDL 334

Query: 1394 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN 1435
            + E+++ISL +K +  K++A          SDEA EEV   N
Sbjct: 335  NVEEKKISLSIK-ALLKDNA----------SDEAAEEVSEEN 365



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 143/341 (41%), Gaps = 23/341 (6%)

Query: 188 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 247
           G +V   V S+ E+ ++L+      G +      N  P  + +   ++   + A++L V+
Sbjct: 20  GEVVDGTVISVKEDEIVLNIGYKADGIITRSEYTNK-PNVDLRTVVSEGDTMKAKVLKVN 78

Query: 248 PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVV--RVDRGL--GLLLDIPSTPVSTP 303
                V LT    +    A   + K+ + Y+  +V+  +VD+ +  GL + I    V  P
Sbjct: 79  DGDGQVLLTYRRLV----AEEGNKKLEEAYNNKEVITAKVDKAIPGGLSVVIDEARVFIP 134

Query: 304 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLEGLATGILKASAFEGLVFTH 359
           A + ISD  E+++ K E     G  V   I  +    R + G    ++ A   E      
Sbjct: 135 ASL-ISDTYEKDLTKFE-----GQEVSFVITEYNPKKRRIIGDCKQLILAKKAEQAEKLL 188

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           + +K G  ++G V  V  FGA +   GGV  L  +  MS      P K FKVG  +   V
Sbjct: 189 ASIKEGDTIEGTVKNVTDFGAFIDL-GGVDGLLHISEMSWGRTENPKKVFKVGDSVKAFV 247

Query: 420 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
             +   +I ++ K             YA      +  G + ++   G FV    GV    
Sbjct: 248 KEINGSKIALSLKYPDQNPWTDAPEKYAVGN---VVKGKVARMTDFGAFVELETGVDALL 304

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             S++ L+   +PS +  +GQ ++ +++      ++I+LS 
Sbjct: 305 HVSQIALEHVDKPSDVLKIGQEIEAKVVDLNVEEKKISLSI 345



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGV 422
           G VVKGKV  +  FGA V+   GV AL  +  ++   + KP    K+G E+  +V  L V
Sbjct: 277 GNVVKGKVARMTDFGAFVELETGVDALLHVSQIALEHVDKPSDVLKIGQEIEAKVVDLNV 336

Query: 423 KSKRITVTHKKTL 435
           + K+I+++ K  L
Sbjct: 337 EEKKISLSIKALL 349


>gi|441520462|ref|ZP_21002129.1| 30S ribosomal protein S1 [Gordonia sihwensis NBRC 108236]
 gi|441459908|dbj|GAC60090.1| 30S ribosomal protein S1 [Gordonia sihwensis NBRC 108236]
          Length = 489

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGSAEDFLAAVDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VTVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          V+ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------VEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D ++RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AVDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVSVGDDAMV 346

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLDRRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 149/354 (42%), Gaps = 31/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ V+ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            G    S+  +       +   VG      ++D++ +  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQANEDYTE 371


>gi|381397179|ref|ZP_09922592.1| RNA binding S1 domain protein [Microbacterium laevaniformans OR221]
 gi|380775496|gb|EIC08787.1| RNA binding S1 domain protein [Microbacterium laevaniformans OR221]
          Length = 483

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 171/384 (44%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  + G V K+D +  LL +       + ++   +    +P+E+        +G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEVEAL 91

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1144
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVEK------IKENDGVVTGSVIEVVKG--GLI 141

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V IG   +      EL+ +    P  G               Q ++ K+LE+ +      
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG---------------QEIEAKILELDKNRN--- 183

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            +V LS R+ L+   S + +               + +L    + +G V ++ + G F+ L
Sbjct: 184  NVVLSRRALLEQTQSESRTTF-------------LNNLHKGQVRKGVVSSIVNFGAFVDL 230

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S LS  ++E   +   +G+ V   +L V+   +RV ++LK +      + 
Sbjct: 231  G-GVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKAT-----QED 284

Query: 1325 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  H +G +  G++ ++  +G F+ + +  + GL H+SELS  HV+  E +   G
Sbjct: 285  PWQVFARTHAIGQVAPGKVTKLVPFGAFVRVAD-GIEGLVHISELSGKHVELAEQVVSVG 343

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            E+V VKI+ +D E+RRISL +K +
Sbjct: 344  EEVFVKIIDIDLERRRISLSLKQA 367



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 170/388 (43%), Gaps = 38/388 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +++G V+ +D    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKED 97

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVEKIKE-NDGVVT-GSVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R +  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRTTFLNNLH 209

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    V  G V  ++  G FVR    +
Sbjct: 264 ILEVDLDRERVSLSLKATQEDPWQVF----ARTHAIGQVAPGKVTKLVPFGAFVRVADGI 319

Query: 652 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
            G    S+ + G+  +L+ +   VG+ V   I+D++ E  RI+LSLKQ    S D +  +
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGEEVFVKIIDIDLERRRISLSLKQ-ANESVDPNGTE 377

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGF 738
               L     M      NG E K+ EGF
Sbjct: 378 FDPAL---YGMATEYDENG-EYKYPEGF 401


>gi|326382653|ref|ZP_08204344.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
 gi|326198772|gb|EGD55955.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
          Length = 490

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGSAEDFLAAVDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VTVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          V+ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------VEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D ++RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           A+ S+     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AVDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVSVGDDAMV 346

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLDRRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 149/354 (42%), Gaps = 31/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ V+ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            G    S+  +       +   VG      ++D++ +  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQANEDYTE 371


>gi|302533839|ref|ZP_07286181.1| ribosomal protein S1 [Streptomyces sp. C]
 gi|302442734|gb|EFL14550.1| ribosomal protein S1 [Streptomyces sp. C]
          Length = 504

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 187/419 (44%), Gaps = 66/419 (15%)

Query: 1008 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1057
            P  + V++IG+   F    D +I     G  V G + KVD +  LL I       + ++ 
Sbjct: 12   PPQVAVNDIGNAEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRE 71

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +P+E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 72   LSIKHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWG 118

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
             ++    E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 119  TIEKIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE---- 172

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHL 1236
                       ++ K++E+ +      +V LS R+ L+   S    + L+T         
Sbjct: 173  -----------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------- 209

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
                 L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V 
Sbjct: 210  -----LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVT 263

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1355
              VL V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + 
Sbjct: 264  VEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV- 317

Query: 1356 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
            +  + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 318  DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 376



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 40  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 99

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 100 KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 155

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 156 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 211

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 212 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 265

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 266 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 322

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 323 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 372


>gi|167748874|ref|ZP_02421001.1| hypothetical protein ANACAC_03648 [Anaerostipes caccae DSM 14662]
 gi|167651844|gb|EDR95973.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes
            caccae DSM 14662]
          Length = 633

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 8/181 (4%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  E    + P M + G VKNVT  G FI L    D  + +S +S G VE+P+K F IG 
Sbjct: 459  KQKELFAKIEPGMKIDGVVKNVTDFGAFIDLG-GADGLLHISEMSWGRVENPKKVFSIGD 517

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             V   VL  +   +++ ++LK  +     ++E        VG++V G++ R+  +G F+ 
Sbjct: 518  KVT--VLIKDIQGEKIALSLKFPEENPWLKAE----EKYKVGNVVDGKVARMTDFGAFVE 571

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
            +E + +  L HVS+++++H+D    +   G+++  K++   K++++ISL MK+    N  
Sbjct: 572  LE-SGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDFKKDEKKISLSMKALLNDNAE 630

Query: 1414 D 1414
            D
Sbjct: 631  D 631



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 16/240 (6%)

Query: 285 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE 340
           +D GL +++D     V  PA + +SD  E +++K +     G  +   I  F    R + 
Sbjct: 394 LDGGLSVIID--EARVFIPASL-VSDSYERDLKKYD-----GQEIEFVISEFNPRKRRVI 445

Query: 341 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
           G    +L A+  E      + ++PGM + G V  V  FGA +   GG   L  +  MS  
Sbjct: 446 GDRKQLLVAAKKEKQKELFAKIEPGMKIDGVVKNVTDFGAFIDL-GGADGLLHISEMSWG 504

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
            +  P K F +G ++   +  ++ ++I ++ K       L     Y       +  G + 
Sbjct: 505 RVENPKKVFSIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAEEKYKVGN---VVDGKVA 561

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++   G FV   +G+      S++  +   +PS +  VGQ +  +++      ++I+LS 
Sbjct: 562 RMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDFKKDEKKISLSM 621



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 35/198 (17%)

Query: 623 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
           + I P   + G V N+ + G F+  LG   G    S+   G+  +  K + +G  V   I
Sbjct: 465 AKIEPGMKIDGVVKNVTDFGAFID-LGGADGLLHISEMSWGRVENPKKVFSIGDKVTVLI 523

Query: 683 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 742
            D+  E  +I LSLK          F +E+                   LK  E + +G+
Sbjct: 524 KDIQGE--KIALSLK----------FPEEN-----------------PWLKAEEKYKVGN 554

Query: 743 VIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAE 797
           V++GKV    DFG  V  E   D    ++     H       +  G  I A ++D  K E
Sbjct: 555 VVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDFKKDE 614

Query: 798 RLVDLSLKTVFIDRFREA 815
           + + LS+K +  D   +A
Sbjct: 615 KKISLSMKALLNDNAEDA 632



 Score = 42.0 bits (97), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 363 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
           K G VV GKV  +  FGA V+   G+ AL  +  +++  I KP     VG E+  +V+  
Sbjct: 551 KVGNVVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDF 610

Query: 423 K--SKRITVTHKKTL 435
           K   K+I+++ K  L
Sbjct: 611 KKDEKKISLSMKALL 625


>gi|317470286|ref|ZP_07929680.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes sp.
            3_2_56FAA]
 gi|316902259|gb|EFV24179.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes sp.
            3_2_56FAA]
          Length = 633

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 8/181 (4%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  E    + P M + G VKNVT  G FI L    D  + +S +S G VE+P+K F IG 
Sbjct: 459  KQKELFAKIEPGMKIDGVVKNVTDFGAFIDLG-GADGLLHISEMSWGRVENPKKVFSIGD 517

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             V   VL  +   +++ ++LK  +     ++E        VG++V G++ R+  +G F+ 
Sbjct: 518  KVT--VLIKDIQGEKIALSLKFPEENPWLKAE----EKYKVGNVVDGKVARMTDFGAFVE 571

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
            +E + +  L HVS+++++H+D    +   G+++  K++   K++++ISL MK+    N  
Sbjct: 572  LE-SGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDFKKDEKKISLSMKALLNDNAE 630

Query: 1414 D 1414
            D
Sbjct: 631  D 631



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 16/240 (6%)

Query: 285 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE 340
           +D GL +++D     V  PA + +SD  E +++K +     G  +   I  F    R + 
Sbjct: 394 LDGGLSVIID--EARVFIPASL-VSDSYERDLKKYD-----GQEIEFVISEFNPRKRRVI 445

Query: 341 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
           G    +L A+  E      + ++PGM + G V  V  FGA +   GG   L  +  MS  
Sbjct: 446 GDRKQLLVAAKKEKQKELFAKIEPGMKIDGVVKNVTDFGAFIDL-GGADGLLHISEMSWG 504

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
            +  P K F +G ++   +  ++ ++I ++ K       L     Y       +  G + 
Sbjct: 505 RVENPKKVFSIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAEEKYKVGN---VVDGKVA 561

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++   G FV   +G+      S++  +   +PS +  VGQ +  +++      ++I+LS 
Sbjct: 562 RMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDFKKDEKKISLSM 621



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 35/198 (17%)

Query: 623 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
           + I P   + G V N+ + G F+  LG   G    S+   G+  +  K + +G  V   I
Sbjct: 465 AKIEPGMKIDGVVKNVTDFGAFID-LGGADGLLHISEMSWGRVENPKKVFSIGDKVTVLI 523

Query: 683 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 742
            D+  E  +I LSLK          F +E+                   LK  E + +G+
Sbjct: 524 KDIQGE--KIALSLK----------FPEEN-----------------PWLKAEEKYKVGN 554

Query: 743 VIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAE 797
           V++GKV    DFG  V  E   D    ++     H       +  G  I A ++D  K E
Sbjct: 555 VVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDFKKDE 614

Query: 798 RLVDLSLKTVFIDRFREA 815
           + + LS+K +  D   +A
Sbjct: 615 KKISLSMKALLNDNAEDA 632



 Score = 42.4 bits (98), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 363 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
           K G VV GKV  +  FGA V+   G+ AL  +  +++  I KP     VG E+  +V+  
Sbjct: 551 KVGNVVDGKVARMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEITAKVVDF 610

Query: 423 K--SKRITVTHKKTL 435
           K   K+I+++ K  L
Sbjct: 611 KKDEKKISLSMKALL 625


>gi|444433042|ref|ZP_21228188.1| 30S ribosomal protein S1 [Gordonia soli NBRC 108243]
 gi|443886106|dbj|GAC69909.1| 30S ribosomal protein S1 [Gordonia soli NBRC 108243]
          Length = 493

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 183/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 12   VAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 71

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+       ++G  V   VL+  KE K  RL+L   +        + +   ++
Sbjct: 72   KHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYERAWGTIE 118

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 119  QLKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE------- 169

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 170  --------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 205

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 206  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVL 264

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 265  DVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GI 318

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 319  EGLVHISELAERHVEVPDQVVSVGDDALVKVIDIDLERRRISLSLKQA 366



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 152/389 (39%), Gaps = 46/389 (11%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 26  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 85

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + + L +    V G V  V    +++ +  
Sbjct: 86  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEQLKEKDEAVKGTVIEVVKGGLILDIGL 145

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 146 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 197

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 198 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 256

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 257 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 292

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 790
               IG ++ GKV +   FG  V  EE  +    I+     H ++    V  G      +
Sbjct: 293 ---AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDALVKV 349

Query: 791 LDVAKAERLVDLSLKTVFIDRFREANSNR 819
           +D+    R + LSLK    D   E + ++
Sbjct: 350 IDIDLERRRISLSLKQANEDYTEEFDPSK 378



 Score = 47.8 bits (112), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 37  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 96

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLILSKKRAQYERAWGTIEQLKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 153 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 208

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 209 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 262

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 263 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 318

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 319 EGLVHISELAERHVEVPDQVVSVGDDALVKVIDIDLERRRISLSLKQANEDYT------E 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 373 EF-DPSKYGMADSYDEQGNYIFPEGFDADTNEWLEGF 408


>gi|228996709|ref|ZP_04156346.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
 gi|228763028|gb|EEM11938.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
          Length = 382

 Score = 82.4 bits (202), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 176/390 (45%), Gaps = 62/390 (15%)

Query: 1029 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1088
            +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA     L 
Sbjct: 17   VGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKASDVVKLD 65

Query: 1089 INKEKKLLRLVLRPFQDG---ISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
             N E K+++L     +D    +S + VD       +Q     G++    +  I++G  GL
Sbjct: 66   QNLELKVIKL-----EDDDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNG--GL 118

Query: 1144 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1203
            VV +G   +      E+  +              +  + Y +G+ +  K++E+ R     
Sbjct: 119  VVDLGVRGFIPASLVEMYYV--------------EDFTDY-KGKTLAVKIVELDRE---K 160

Query: 1204 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
              V LS ++ ++              +   K  E I  L    +V+G V+ +T  G F+ 
Sbjct: 161  NRVILSHKAVVEQ-------------ELESKKKEAISSLKEGDVVEGTVQRLTDFGAFVN 207

Query: 1264 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1323
            +   +D  V +S +S   VE P      G+ V  +VLSV+  ++R+ +++K      A  
Sbjct: 208  VG-DVDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADTQRISLSIKA-----AQP 261

Query: 1324 SEINNLS-NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1382
                N+S  +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   
Sbjct: 262  GPWENVSAEVKAGDIREGIVKRIVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEM 320

Query: 1383 GEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 321  GQEVKVKVLEVHAAEKRISLSIKEAVEENN 350



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   G V  L  +  +S   + +P      G  +  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GDVDGLVHISQISHDRVEQPSDVLTQGQSVKVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          +S+  +A D  I  G + +I   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVSAEVKAGD--IREGIVKRIVTFGAFVEILPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               S++       P+ +  +GQ VK +++    A +RI+LS 
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSI 342



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 124/273 (45%), Gaps = 44/273 (16%)

Query: 1079 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1138
            GK +   ++ +++EK   R++L      + ++ ++       + + EGD+V G + ++  
Sbjct: 146  GKTLAVKIVELDREKN--RVILS--HKAVVEQELESKKKEAISSLKEGDVVEGTVQRLTD 201

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
               G  V +G  + G VH +++ +  V  P         D L+   +GQ VK KVL +  
Sbjct: 202  F--GAFVNVG-DVDGLVHISQISHDRVEQP--------SDVLT---QGQSVKVKVLSVDA 247

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                T  + LS++++                  PG       ++    I +G VK + + 
Sbjct: 248  D---TQRISLSIKAA-----------------QPGPWENVSAEVKAGDIREGIVKRIVTF 287

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK---- 1314
            G F+ +   ++  V +S +++ +V++P +   +G+ V  +VL V    KR+ +++K    
Sbjct: 288  GAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAVE 347

Query: 1315 -TSDSRTASQSEINNLS-NLHVGDIVIGQIKRV 1345
              +++   SQ E  + S      DI+  Q+K++
Sbjct: 348  ENNETEDYSQYEPTSESATFQFSDIIGEQLKKL 380



 Score = 44.7 bits (104), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 157/390 (40%), Gaps = 50/390 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G VV G V  V+    +V        + P+  ++   I K     K+   L  +V+ ++ 
Sbjct: 18  GDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVKLDQNLELKVIKLED 77

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
             + ++  K  V ++ A +    + T   +    +  I   G  V    GV+GF P S +
Sbjct: 78  DDLVLS--KRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDL--GVRGFIPASLV 133

Query: 485 GLDPGCEPSSMYHV-------GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----- 532
                     MY+V       G+ +  +I+       R+ LS       V E +L     
Sbjct: 134 ---------EMYYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA----VVEQELESKKK 180

Query: 533 -----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 586
                +K G +V G V  +T     V V   G   G +    ++ D +E  +    V+  
Sbjct: 181 EAISSLKEGDVVEGTVQRLTDFGAFVNV---GDVDGLVHISQISHDRVEQPS---DVLTQ 234

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGC 643
           G     ++L +D ++  + LS     I +AQ  P +  ++ +    +  G V  I+  G 
Sbjct: 235 GQSVKVKVLSVDADTQRISLS-----IKAAQPGPWENVSAEVKAGDIREGIVKRIVTFGA 289

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           FV  L  + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++   +
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAVEEN 349

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELK 733
            +     ++    E  A  Q S   G +LK
Sbjct: 350 NETEDYSQYEPTSES-ATFQFSDIIGEQLK 378



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 120/291 (41%), Gaps = 64/291 (21%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLAD-HLEHATVMKSVIKPGYEF 590
           +++G +V+G V  V    V+V V   GY + G IP   LA+ H+E A+    V+K     
Sbjct: 15  LQVGDVVTGSVTKVEEKQVLVNV---GYKTDGVIPISELANVHIEKAS---DVVKLDQNL 68

Query: 591 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
            +L V+  E  +L+LS +   +++ +             V    V +I+  G  V    R
Sbjct: 69  -ELKVIKLEDDDLVLSKRA--VDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDLGVR 125

Query: 651 LTGFAPRSKAVDGQRADLSKTYYV-------GQSVRSNILDVNSETGRITLSLKQSCCSS 703
             GF P         A L + YYV       G+++   I++++ E  R+ LS K      
Sbjct: 126 --GFIP---------ASLVEMYYVEDFTDYKGKTLAVKIVELDREKNRVILSHK------ 168

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNG-SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 762
             A   QE          L+S K    S LK       G V+EG V    DFG  V+   
Sbjct: 169 --AVVEQE----------LESKKKEAISSLKE------GDVVEGTVQRLTDFGAFVNV-- 208

Query: 763 HSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKT 806
             DV G +   Q++   VE        G  ++  +L V    + + LS+K 
Sbjct: 209 -GDVDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADTQRISLSIKA 258


>gi|308231891|ref|ZP_07414153.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001]
 gi|308369488|ref|ZP_07417965.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002]
 gi|308375631|ref|ZP_07444575.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007]
 gi|308376775|ref|ZP_07439993.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008]
 gi|308377781|ref|ZP_07480385.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009]
 gi|308378993|ref|ZP_07484583.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010]
 gi|308380132|ref|ZP_07488808.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011]
 gi|308215731|gb|EFO75130.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001]
 gi|308327429|gb|EFP16280.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002]
 gi|308345717|gb|EFP34568.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007]
 gi|308350016|gb|EFP38867.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008]
 gi|308354653|gb|EFP43504.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009]
 gi|308358609|gb|EFP47460.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010]
 gi|308362535|gb|EFP51386.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011]
          Length = 392

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 127/268 (47%), Gaps = 39/268 (14%)

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            GGL++ IG   +      E++ +    P  G +               ++ K++E+ +  
Sbjct: 47   GGLILDIGLRGFLPASLVEMRRVRDLQPYIGKE---------------IEAKIIELDKNR 91

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                +V LS R+ L+   S   S+              + +L    I +G V ++ + G 
Sbjct: 92   N---NVVLSRRAWLEQTQSEVRSEF-------------LNNLQKGTIRKGVVSSIVNFGA 135

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +    
Sbjct: 136  FVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKAT---- 190

Query: 1321 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
              +    + +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +
Sbjct: 191  -QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQV 248

Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKSS 1407
               G+   VK++ +D E+RRISL +K +
Sbjct: 249  VAVGDDAMVKVIDIDLERRRISLSLKQA 276



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           ++++ G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   V
Sbjct: 115 NNLQKGTIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEV 173

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V    +R++++ K T          ++A      I  G +TK+   G FVR   G++G
Sbjct: 174 LDVDMDRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEG 230

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SEL       P  +  VG     +++      RRI+LS 
Sbjct: 231 LVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSL 273


>gi|260101629|ref|ZP_05751866.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
 gi|417007625|ref|ZP_11945400.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
 gi|260084562|gb|EEW68682.1| 30S ribosomal protein S1 [Lactobacillus helveticus DSM 20075]
 gi|328467366|gb|EGF38444.1| 30S ribosomal protein S1 [Lactobacillus helveticus MTCC 5463]
          Length = 403

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGGFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKIKVIGIDDDR 258

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K ++     Q+     ++L+ GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G V++GKV  + +FG  +   GGV  L  +  +S   + KP    K G ++  +V+G+  
Sbjct: 198 GDVIEGKVSRLTNFGGFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKIKVIGIDD 256

Query: 425 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 478
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 531
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S  D
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSSD 362



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGG 213

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            FI +   +  GL H+SE+S  HVD    + +AG+ VK+K++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKIKVIGIDDDRHRISLSIKQT 268



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 34/197 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD++ G++S+ L+  GG +   G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSR-LTNFGGFIDVGG--VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKIKVIGIDDD---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1306 SKRVEVTLKTSDSRTAS 1322
             +R+ +++K +DS  +S
Sbjct: 344  DRRISLSIKAADSNASS 360



 Score = 44.7 bits (104), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 133/320 (41%), Gaps = 36/320 (11%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           ++VK G KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKLGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 515 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGGFIDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H      V+K G +   +++ +D++   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKIKVIGIDDDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 688 ETGRITLSLK--QSCCSSTD 705
              RI+LS+K   S  SS+D
Sbjct: 343 SDRRISLSIKAADSNASSSD 362


>gi|403713637|ref|ZP_10939721.1| 30S ribosomal protein S1 [Kineosphaera limosa NBRC 100340]
 gi|403212049|dbj|GAB94404.1| 30S ribosomal protein S1 [Kineosphaera limosa NBRC 100340]
          Length = 489

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 173/389 (44%), Gaps = 61/389 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG----H 1085
            G  V G + KVD +  LL I    +  +        PS     +     G+ VT      
Sbjct: 35   GDIVEGVIVKVDRDEVLLDIGYKTEGVI--------PSRELSIKHDVDPGEVVTVGDEVE 86

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
             L + KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 87   ALVLQKEDKEGRLILSKKR-----AQYERAWGTIEKVKEEDGVVTGTVIEVVKG--GLIL 139

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 140  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------IEAKIIELDKNRN---N 181

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   +               + +L    +  G V ++ + G F+ L 
Sbjct: 182  VVLSRRAWLEQTQSEVRTTF-------------LRELQKGQVRSGVVSSIVNFGAFVDLG 228

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +  
Sbjct: 229  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKAT-----QEDP 282

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
              + +  H +G +V G++ ++  +G F+ +++  + GL H+SEL+E HV+  E +   G 
Sbjct: 283  WQHFARTHAIGQVVPGKVTKLVPFGAFVRVDD-GIEGLVHISELAERHVELPEQVVTVGG 341

Query: 1385 KVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
            ++ VK++ +D E+RRISL +K +   NDA
Sbjct: 342  EIFVKVIDIDLERRRISLSLKQA---NDA 367



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 156/362 (43%), Gaps = 35/362 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 35  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDEVEALVLQKED 94

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGTIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 150

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 151 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLRELQ 206

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 260

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 261 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAFVRVDDGI 316

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ    + DA+    
Sbjct: 317 EGLVHISELAERHVELPEQVVTVGGEIFVKVIDIDLERRRISLSLKQ----ANDAALGNA 372

Query: 712 HF 713
            F
Sbjct: 373 EF 374



 Score = 41.6 bits (96), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 133/309 (43%), Gaps = 54/309 (17%)

Query: 1031 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1081
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 109  ERAWGTIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 167

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1138
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 168  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLRELQKGQVRSGVVSSIVN 220

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
               G  V +G  + G VH +EL    +  P    + GQ            V  +VL++  
Sbjct: 221  F--GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQE-----------VTVEVLDVDM 266

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LSL+++ +                P +H  +   +    +V G V  +   
Sbjct: 267  DRE---RVSLSLKATQE---------------DPWQHFARTHAI--GQVVPGKVTKLVPF 306

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   ++  V +S L++ +VE PE+   +G  +  +V+ ++   +R+ ++LK ++ 
Sbjct: 307  GAFVRVDDGIEGLVHISELAERHVELPEQVVTVGGEIFVKVIDIDLERRRISLSLKQAND 366

Query: 1319 RTASQSEIN 1327
                 +E +
Sbjct: 367  AALGNAEFD 375


>gi|385813938|ref|YP_005850331.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
 gi|323466657|gb|ADX70344.1| 30S ribosomal protein S1 [Lactobacillus helveticus H10]
          Length = 403

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGGFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDR 258

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K ++     Q+     ++L+ GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 72.4 bits (176), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 14/173 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G V++GKV  + +FG  +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGGFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDN 256

Query: 425 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 478
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 531
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S  D
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSSD 362



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 34/197 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD++ G++S+ L+  GG +   G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSR-LTNFGGFIDVGG--VDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +                  P    +   DL+  
Sbjct: 244  GQDVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATADLNEG 283

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPS 343

Query: 1306 SKRVEVTLKTSDSRTAS 1322
             +R+ +++K +DS  +S
Sbjct: 344  DRRISLSIKAADSNASS 360



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 134/320 (41%), Gaps = 36/320 (11%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 515 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREKAFDKVASQLVVGDVIEGKVSRLTNFGGFIDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 688 ETGRITLSLK--QSCCSSTD 705
              RI+LS+K   S  SS+D
Sbjct: 343 SDRRISLSIKAADSNASSSD 362


>gi|87306426|ref|ZP_01088573.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
 gi|87290605|gb|EAQ82492.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
          Length = 636

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 182/390 (46%), Gaps = 66/390 (16%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKA 1081
            ++ IGQR  G V  + +  A + +   +   L I D ++     P+E+        I   
Sbjct: 216  ELEIGQRRKGVVKNIADFGAFVDLG-GIDGLLHITDMSWGRIGHPTEV------VKIDDE 268

Query: 1082 VTGHVLSINKEKKLLRLVLRPFQ----DGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
            V   +L+I+ E++ + L ++  Q    DG+  K               G  V G++  ++
Sbjct: 269  VEVQILNIDHERQKIALGMKQMQPSPWDGVEGKY------------PVGSKVRGQVVNVM 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
            S   G  V++   + G VH +E+           + +    P    + G  +   VL I+
Sbjct: 317  SY--GAFVKLEEGIEGLVHISEMS----------WTKRISHPSEVVNIGDEIDVVVLGIN 364

Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNVT 1256
            +  +     E+SL     GM  T S+             E I++  P   IV+G V+N+T
Sbjct: 365  KEKQ-----EISL-----GMKQTQSN-----------PWENIKERYPVESIVKGKVRNLT 403

Query: 1257 SKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
            + G F+ L   +D  + +S++S    +  P +    G+ V  +VL++E   +R+ + LK 
Sbjct: 404  NYGAFVELEEGIDGLLHVSDMSWTRKIGHPSEMLEKGQEVECKVLNIEEDRRRIALGLKQ 463

Query: 1316 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1375
             D    + S  +         +V G++ ++ ++G+F+ +E+  L GL H+SEL+++ V+N
Sbjct: 464  MDLDPWASSIPDKY---QPNQLVKGKVTKITNFGVFVGLED-GLEGLLHISELADEKVEN 519

Query: 1376 IETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             E + + G+ ++VKIL+VD ++R+I L  K
Sbjct: 520  PEDVVKVGDDIEVKILRVDTDERKIGLSRK 549



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 142/348 (40%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G   KG V  +  FGA V   GG+  L  +  MS   I  P +  K+  E+  ++L +  
Sbjct: 220 GQRRKGVVKNIADFGAFVDL-GGIDGLLHITDMSWGRIGHPTEVVKIDDEVEVQILNIDH 278

Query: 425 KR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           +R  I +  K+        +   Y   +      G +  +  +G FV+   G++G    S
Sbjct: 279 ERQKIALGMKQMQPSPWDGVEGKYPVGSK---VRGQVVNVMSYGAFVKLEEGIEGLVHIS 335

Query: 483 ELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 537
           E+        PS + ++G  +   ++      + I+L   MK T+ +  + +K    + S
Sbjct: 336 EMSWTKRISHPSEVVNIGDEIDVVVLGINKEKQEISLG--MKQTQSNPWENIKERYPVES 393

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFD- 591
           +V G V  +T     V +      +G     H++D      + H + M   ++ G E + 
Sbjct: 394 IVKGKVRNLTNYGAFVEL-----EEGIDGLLHVSDMSWTRKIGHPSEM---LEKGQEVEC 445

Query: 592 QLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++L ++ +   + L  K   L   A  +P       PN +V G V  I   G FV     
Sbjct: 446 KVLNIEEDRRRIALGLKQMDLDPWASSIPD---KYQPNQLVKGKVTKITNFGVFVGLEDG 502

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
           L G    S+  D +  +      VG  +   IL V+++  +I LS K+
Sbjct: 503 LEGLLHISELADEKVENPEDVVKVGDDIEVKILRVDTDERKIGLSRKR 550



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 159/410 (38%), Gaps = 70/410 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLG 649
           ++L +D E  N+++S + SLI   +Q   D+    +       G V NI + G FV  LG
Sbjct: 183 EVLKIDEERRNIVVS-RRSLIEKKRQKDRDSLLQELEIGQRRKGVVKNIADFGAFVD-LG 240

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
            + G    +    G+    ++   +   V   IL+++ E  +I L +KQ           
Sbjct: 241 GIDGLLHITDMSWGRIGHPTEVVKIDDEVEVQILNIDHERQKIALGMKQ----------- 289

Query: 710 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------H 763
                       +Q S  +G E K    + +GS + G+V     +G  V  EE      H
Sbjct: 290 ------------MQPSPWDGVEGK----YPVGSKVRGQVVNVMSYGAFVKLEEGIEGLVH 333

Query: 764 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 823
                +          V  G  I   +L + K ++ + L +K        +  SN     
Sbjct: 334 ISEMSWTKRISHPSEVVNIGDEIDVVVLGINKEKQEISLGMK--------QTQSNPWENI 385

Query: 824 KKRKREASKDLG-VHQTVN--AIVEIVK--ENYLVLSLPEYNHSIGYASVSDYNTQKFPQ 878
           K+R    S   G V    N  A VE+ +  +  L +S   +   IG+           P 
Sbjct: 386 KERYPVESIVKGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKIGH-----------PS 434

Query: 879 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEIT 938
           +    GQ V   V+ +       R+ L LK +     +SS   K    Y    LV+ ++T
Sbjct: 435 EMLEKGQEVECKVLNIEEDRR--RIALGLKQMDLDPWASSIPDK----YQPNQLVKGKVT 488

Query: 939 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 988
           +I    + +    G  G +HI+E+ D+K   VEN     K+G  +  +I+
Sbjct: 489 KITNFGVFVGLEDGLEGLLHISELADEK---VENPEDVVKVGDDIEVKIL 535



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 109/487 (22%), Positives = 192/487 (39%), Gaps = 83/487 (17%)

Query: 357 FTHSD-VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP--GKKFKVGA 413
           F H + V+   +V G ++ VD    ++   G  +   P     E +   P  G K KV  
Sbjct: 35  FEHEESVELNKIVDGTILRVDDEFVLIDVGGKSEGSIPRDEWDEEDEDPPKIGDKIKVLV 94

Query: 414 ELVFRVLGVKSK---RITVTHKKTL-VKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 469
           E +    G        IT++ +K   +      +SS  E     +  G + +  K G  V
Sbjct: 95  EDIEDEFGRTDDPHGMITLSKRKAQKIIEWDTTMSSIEEGN---VVEGTVVRKIKGGLLV 151

Query: 470 RFYNGVQGFAPRSELGLDPGCEPSSMY-HVGQVVKCRIMS------SIPASRRINLSFMM 522
               GV  F P S++ +     PS +  ++G+ V+C ++       +I  SRR   S + 
Sbjct: 152 DI--GVNVFLPASQVDI---RRPSDIADYIGKKVECEVLKIDEERRNIVVSRR---SLIE 203

Query: 523 KPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLE 575
           K  +   D L++   +G    GVV  +      V +   G   G +   H+ D     + 
Sbjct: 204 KKRQKDRDSLLQELEIGQRRKGVVKNIADFGAFVDL---GGIDGLL---HITDMSWGRIG 257

Query: 576 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVH 632
           H T    V+K   E + Q+L +D+E   + L  K       Q  P D     +P  S V 
Sbjct: 258 HPT---EVVKIDDEVEVQILNIDHERQKIALGMK-----QMQPSPWDGVEGKYPVGSKVR 309

Query: 633 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGR 691
           G V N++  G FV+    + G    S+    +R +  S+   +G  +   +L +N E   
Sbjct: 310 GQVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRISHPSEVVNIGDEIDVVVLGINKEKQE 369

Query: 692 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 751
           I+L +KQ+   S     ++E + +E                         S+++GKV   
Sbjct: 370 ISLGMKQT--QSNPWENIKERYPVE-------------------------SIVKGKVRNL 402

Query: 752 NDFGVVVSFEEHSDVYGFITHHQLA------GATVESGSVIQAAILDVAKAERLVDLSLK 805
            ++G  V  EE  D    ++              +E G  ++  +L++ +  R + L LK
Sbjct: 403 TNYGAFVELEEGIDGLLHVSDMSWTRKIGHPSEMLEKGQEVECKVLNIEEDRRRIALGLK 462

Query: 806 TVFIDRF 812
            + +D +
Sbjct: 463 QMDLDPW 469


>gi|296119662|ref|ZP_06838220.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
 gi|295967545|gb|EFG80812.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
          Length = 489

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 175/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELQAKEEPVTGTVIEVVKG--GLIL 138

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +   +P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG---------------QELEAKIIELDKQRN---N 180

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAFLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   GE
Sbjct: 282  WRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGE 340

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +V VK++ +D E+RRISL +K +
Sbjct: 341  EVMVKVIDIDLERRRISLSVKQA 363



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           ++G    SEL       P  + +VG+ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGEEVMVKVIDIDLERRRISLS 359



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEEL-QAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+          +   VG+ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGEEVMVKVIDIDLERRRISLSVKQA-----DEDYTE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDSETNEWKEGF 405


>gi|262202770|ref|YP_003273978.1| RNA-binding S1 domain-containing protein [Gordonia bronchialis DSM
            43247]
 gi|262086117|gb|ACY22085.1| RNA binding S1 domain protein [Gordonia bronchialis DSM 43247]
          Length = 487

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  V-DEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 155/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.0 bits (110), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDEQGNYIFPEGFDADTNEWLEGF 407


>gi|433455415|ref|ZP_20413498.1| 30S ribosomal protein S1 [Arthrobacter crystallopoietes BAB-32]
 gi|432197620|gb|ELK53989.1| 30S ribosomal protein S1 [Arthrobacter crystallopoietes BAB-32]
          Length = 491

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 185/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG+   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGTPEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+        +G  V   VL+  KE K  RL+L   +        DI     +
Sbjct: 74   KHDVDPGEV------VAVGDEVEALVLT--KEDKEGRLILSKKRAQYERAWGDI-----E 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G         
Sbjct: 121  KVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG--------- 169

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                  Q ++ K++E+ +      +V LS R+ L+    T S   ST        L K+E
Sbjct: 170  ------QQIEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKLE 210

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
                  +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 211  ---KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 266

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  +
Sbjct: 267  EVDLDRERVSLSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-GI 320

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+  HV+  E +   G+++ VK++ +D E+RRISL +K +
Sbjct: 321  EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDEVEALVLTKE 97

Query: 511 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 625
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 800
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 801 DLSLK 805
            LSLK
Sbjct: 362 SLSLK 366



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           EL +        +  VG  +  +++      RRI+LS 
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSL 365



 Score = 48.5 bits (114), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDEVEALVLTKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|347534431|ref|YP_004841101.1| 30S ribosomal protein S1 [Lactobacillus sanfranciscensis TMW 1.1304]
 gi|345504487|gb|AEN99169.1| 40S ribosomal protein S1 [Lactobacillus sanfranciscensis TMW 1.1304]
          Length = 405

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 6/160 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            IV+G V  +T+ G F+ L   +D  V +S +S  +V  P     +G+ V  +VL++EP  
Sbjct: 204  IVEGKVARLTNFGAFVDLG-GIDGLVHVSEISYDHVSKPSDILKVGEDVKVKVLAIEPER 262

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K          E        VG I+ G +KR+  +G F+ +    + GL H+S
Sbjct: 263  NRISLSIKQLQPGPWDDIE----EKAAVGSILDGTVKRLVDFGAFVEVL-PGVEGLVHIS 317

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            ++S  H+D    + ++GEK++VK+L +D E+ R++L MK+
Sbjct: 318  QISHKHIDKPSDVLKSGEKIQVKVLSIDPEEHRLALSMKA 357



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +++ V P   R+ ++ +    +   ++    + +L VGDIV G++ R+ ++G F+ +   
Sbjct: 165  KIIEVVPEDNRLILSHRAVAEKDRKEAREKIMGSLKVGDIVEGKVARLTNFGAFVDLGGI 224

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            +  GL HVSE+S DHV     I + GE VKVK+L ++ E+ RISL +K
Sbjct: 225  D--GLVHVSEISYDHVSKPSDILKVGEDVKVKVLAIEPERNRISLSIK 270



 Score = 48.1 bits (113), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 110/245 (44%), Gaps = 31/245 (12%)

Query: 379 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 436
           G +V    GV+   P   +++   V    ++K GAEL  +++ V  +  R+ ++H+    
Sbjct: 128 GGLVVNADGVRGFIPASMITDH-FVSDLNQYK-GAELEVKIIEVVPEDNRLILSHRAVAE 185

Query: 437 KSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 488
           K +        EA +++        I  G + ++   G FV    G+ G    SE+  D 
Sbjct: 186 KDR-------KEAREKIMGSLKVGDIVEGKVARLTNFGAFVDL-GGIDGLVHVSEISYDH 237

Query: 489 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDLVKLGSLVSGVVDVV 546
             +PS +  VG+ VK ++++  P   RI+LS   ++P    + ++   +GS++ G V  +
Sbjct: 238 VSKPSDILKVGEDVKVKVLAIEPERNRISLSIKQLQPGPWDDIEEKAAVGSILDGTVKRL 297

Query: 547 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGYEFD-QLLVLDNESSNL 603
                 V V+      G     H++  + H  + K   V+K G +   ++L +D E   L
Sbjct: 298 VDFGAFVEVLP-----GVEGLVHIS-QISHKHIDKPSDVLKSGEKIQVKVLSIDPEEHRL 351

Query: 604 LLSAK 608
            LS K
Sbjct: 352 ALSMK 356



 Score = 45.8 bits (107), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 150/383 (39%), Gaps = 61/383 (15%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 529
           GV+G  P  E+       P+  Y VG  VK  ++S I   +    S+++   R+      
Sbjct: 47  GVEGVIPSKEVSATMESNPTDKYKVGDTVKVVVVSKIGDDKE-GGSYLLSIRRLEALKVW 105

Query: 530 DDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
           D++ +       + V V  P    + V A G  +G IP   + DH     V       G 
Sbjct: 106 DEIKEKADKGENITVKVTRPVRGGLVVNADGV-RGFIPASMITDHF----VSDLNQYKGA 160

Query: 589 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVR 646
           E + +++ +  E + L+LS +       ++        +    +V G V  +   G FV 
Sbjct: 161 ELEVKIIEVVPEDNRLILSHRAVAEKDRKEAREKIMGSLKVGDIVEGKVARLTNFGAFVD 220

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            LG + G    S+      +  S    VG+ V+  +L +  E  RI+LS+KQ      D 
Sbjct: 221 -LGGIDGLVHVSEISYDHVSKPSDILKVGEDVKVKVLAIEPERNRISLSIKQLQPGPWDD 279

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
                   +EEK A                   +GS+++G V    DFG  V  E    V
Sbjct: 280 --------IEEKAA-------------------VGSILDGTVKRLVDFGAFV--EVLPGV 310

Query: 767 YGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            G +   Q++   ++       SG  IQ  +L +   E  + LS+K +            
Sbjct: 311 EGLVHISQISHKHIDKPSDVLKSGEKIQVKVLSIDPEEHRLALSMKAL-----------E 359

Query: 820 QAQKKKRKREASKDLGVHQTVNA 842
           +A K++ K+   K++  + T NA
Sbjct: 360 EAPKEENKKAPKKNVDDNSTSNA 382


>gi|345888062|ref|ZP_08839186.1| 30S ribosomal protein S1 [Bilophila sp. 4_1_30]
 gi|345041152|gb|EGW45343.1| 30S ribosomal protein S1 [Bilophila sp. 4_1_30]
          Length = 570

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 25/195 (12%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1305
            I++G +KN+T  G FI +   +D  + +S++S    +  P + F +G  V  +VL+V+  
Sbjct: 378  ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELFKVGDTVQAKVLTVDQE 437

Query: 1306 SKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
            S++  + +K  T D  T      N  +   VG +V G I  +  +GLF+ +E   + GL 
Sbjct: 438  SEKFTLGIKQLTEDPWT------NVPTAYPVGGLVKGTITNITDFGLFVEVEE-GIEGLV 490

Query: 1364 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1423
            HVSELS   V     +Y+ GE+++ KI+ V  E RR+ L +K           Q+  EEE
Sbjct: 491  HVSELSNKKVKTPAELYKEGEEIQAKIIHVSAEDRRLGLSIK-----------QLKDEEE 539

Query: 1424 SDEAIEEVGSYNRSS 1438
              +  E    Y+RS 
Sbjct: 540  RKKPRE----YSRSG 550



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  + ++ L+   +V G  KN+T  G F+ L   LD  + ++++S   +  P +   +G+
Sbjct: 193  KRQDLLQTLAEGQVVTGKAKNITEYGVFVDLG-GLDGLLHITDMSWKRIRHPREMVTLGQ 251

Query: 1294 LVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
             +  +VLS +  +++V + LK    D      +     S  +      G++  +  YG F
Sbjct: 252  DLELKVLSFDKDNQKVSLGLKQLVPDPWQDITARFPEASRHN------GKVTNLVDYGAF 305

Query: 1352 ITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            + +E   + GL H+SE+S    + +   + R G++V+V IL VD EK+RISLGMK 
Sbjct: 306  VELE-PGVEGLVHISEMSWTRKLRHPSQMVRQGDEVEVVILGVDPEKKRISLGMKQ 360



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 191/468 (40%), Gaps = 84/468 (17%)

Query: 92  SLETVQE--GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 149
            LE VQE  G++    ++ I+  GY +  G      FLP       S +D++P   +  +
Sbjct: 109 QLEDVQEKNGVIKGRIMRRIKG-GYTVDLG--GVEAFLP------GSHVDLRPVPDMDAL 159

Query: 150 VRS--------IDRTRKVVYLSS----DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 197
           V          I+R R  V +S     + +  SK   +DL    +  L  G +V+ + ++
Sbjct: 160 VNQEYEFRVLKINRRRSNVIVSRRVLLEEERDSK--RQDL----LQTLAEGQVVTGKAKN 213

Query: 198 ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA------RILFVDPTSR 251
           I E GV +       G   + H+ +     +WK   +  + V        ++L  D  ++
Sbjct: 214 ITEYGVFVDL----GGLDGLLHITDM----SWKRIRHPREMVTLGQDLELKVLSFDKDNQ 265

Query: 252 AVGLTL-----NPYL-LHNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 302
            V L L     +P+  +  R P +   + KV ++ D    V ++ G+             
Sbjct: 266 KVSLGLKQLVPDPWQDITARFPEASRHNGKVTNLVDYGAFVELEPGV------------- 312

Query: 303 PAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFT 358
              V IS+++   ++R   +  ++G  V V ILG    +    L    +K + +E     
Sbjct: 313 EGLVHISEMSWTRKLRHPSQMVRQGDEVEVVILGVDPEKKRISLGMKQIKPNPWE---LV 369

Query: 359 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAE 414
                 G +++G +  +  FG  +    G+  L    H+S+    K    P + FKVG  
Sbjct: 370 GEKYPEGTILEGVIKNITEFGMFIGIEDGIDGLI---HVSDISWTKKIRHPNELFKVGDT 426

Query: 415 LVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 472
           +  +VL V  +S++ T+  K+        + ++Y       +  G IT I   G FV   
Sbjct: 427 VQAKVLTVDQESEKFTLGIKQLTEDPWTNVPTAYPVGG---LVKGTITNITDFGLFVEVE 483

Query: 473 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
            G++G    SEL       P+ +Y  G+ ++ +I+      RR+ LS 
Sbjct: 484 EGIEGLVHVSELSNKKVKTPAELYKEGEEIQAKIIHVSAEDRRLGLSI 531


>gi|379735729|ref|YP_005329235.1| 30S ribosomal protein S1 [Blastococcus saxobsidens DD2]
 gi|378783536|emb|CCG03204.1| 30S ribosomal protein S1 [Blastococcus saxobsidens DD2]
          Length = 495

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 189/416 (45%), Gaps = 67/416 (16%)

Query: 1006 IKPS---MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH---- 1052
            ++PS    + +++IGS   F    D++I     G  V G + KVD +  LL I       
Sbjct: 6    VRPSSTPQVAINDIGSAEDFLAAIDLTIKYFNDGDIVEGVIVKVDRDEVLLDIGYKTEGV 65

Query: 1053 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1112
            + ++   +    +P+E+        +G  V   VL   KE K  RL+L   +        
Sbjct: 66   IPSRELSIKHDVDPNEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQY 112

Query: 1113 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            + +   ++      ++V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  ERAWGTIEAKKEADEVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGR 170

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
            +               ++ K++E+ +      +V LS R  L+   S   S+        
Sbjct: 171  E---------------LEAKIIELDKNRN---NVVLSRRQWLEQTQSEVRSEF------- 205

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
                  +  L+   +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G
Sbjct: 206  ------LNKLAKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 258

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLF 1351
            + V   VL V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F
Sbjct: 259  QEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHQIGQVVPGKVTKLVPFGAF 313

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + + +  + GL H+SEL+E HV+  E + + G+++ VK++ +D ++RRISL +K +
Sbjct: 314  VRV-DEGIEGLVHISELAERHVEIPEQVVQVGDEILVKVIDIDLDRRRISLSLKQA 368



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 153/347 (44%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  EA D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEAKKEA-DEVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRQWLEQTQSEVRSEFLNKLA 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  +Q    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDLDRERVSLSLKATQEDPWRQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEILVKVIDIDLDRRRISLSLKQA 368



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 32/287 (11%)

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 594
           G +V GV+  V  + V++ +   GY ++G IP+  L+  ++H      V+K G E + L+
Sbjct: 39  GDIVEGVIVKVDRDEVLLDI---GYKTEGVIPSRELS--IKHDVDPNEVVKVGDEVEALV 93

Query: 595 VL-DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
           +  +++   L+LS K +    A    +  +    + VV G V  +++ G  +     L G
Sbjct: 94  LQKEDKEGRLILSKKRAQYERA--WGTIEAKKEADEVVTGTVIEVVKGGLILDI--GLRG 149

Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 713
           F P S     +  DL    YVG+ + + I++++     + LS +Q    +   S ++  F
Sbjct: 150 FLPASLVEMRRVRDLQP--YVGRELEAKIIELDKNRNNVVLSRRQWLEQTQ--SEVRSEF 205

Query: 714 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 773
           L   K+A  Q      S +     F+    ++G VH S      +S++          H 
Sbjct: 206 L--NKLAKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSE-----LSWK----------HI 248

Query: 774 QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 820
                 VE G  +   +LDV      V LSLK    D +R+     Q
Sbjct: 249 DHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHQ 295


>gi|31789463|gb|AAP58577.1| putative 30S ribosomal protein S1 [uncultured Acidobacteria
            bacterium]
          Length = 318

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 94/160 (58%), Gaps = 6/160 (3%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V G V+N+T  G FI +   +D  V +S++S    ++ P +    G+ +   + S++  +
Sbjct: 58   VHGRVRNLTDFGAFIEIEDGVDGLVHVSDISWSRRIKHPSEVLKKGQEIDAVITSIDAEN 117

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ +++K  +     +     L+    GD+V G+I R  ++G F+ +++ NL GLCH+S
Sbjct: 118  RRLSLSIKDLEPNAWDRF----LTEHKPGDVVRGKIARFANFGAFVELDD-NLEGLCHIS 172

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            ELS++ V+  E + + G++++ KIL++D E ++I L  +S
Sbjct: 173  ELSDERVEKPEDVVQLGQEMEFKILRIDVESKKIGLSARS 212



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 35/216 (16%)

Query: 234 NQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNR---APPSHVKVGDIYDQSKVVR 284
           N    V   +L VDP +R + L +     NP+  LH R       H +V ++ D    + 
Sbjct: 14  NPGDTVEVEVLSVDPKARRISLGMKQIQDNPWQTLHERYQVGTRVHGRVRNLTDFGAFIE 73

Query: 285 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE------KKYKEGSCVRVRILGFRH 338
           ++ G+  L             V +SD++    R+++      KK +E   V   I     
Sbjct: 74  IEDGVDGL-------------VHVSDISWS--RRIKHPSEVLKKGQEIDAVITSIDAENR 118

Query: 339 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 398
              L+   L+ +A++  +  H   KPG VV+GK+    +FGA V+    ++ LC +  +S
Sbjct: 119 RLSLSIKDLEPNAWDRFLTEH---KPGDVVRGKIARFANFGAFVELDDNLEGLCHISELS 175

Query: 399 EFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHK 432
           +  + KP    ++G E+ F++L   V+SK+I ++ +
Sbjct: 176 DERVEKPEDVVQLGQEMEFKILRIDVESKKIGLSAR 211



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 14/129 (10%)

Query: 1282 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH----VGDI 1337
            V+ P K    G  V   VLSV+P ++R+ + +K        Q + N    LH    VG  
Sbjct: 6    VKHPSKLVNPGDTVEVEVLSVDPKARRISLGMK--------QIQDNPWQTLHERYQVGTR 57

Query: 1338 VIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKE 1396
            V G+++ +  +G FI IE+  + GL HVS++S    + +   + + G+++   I  +D E
Sbjct: 58   VHGRVRNLTDFGAFIEIED-GVDGLVHVSDISWSRRIKHPSEVLKKGQEIDAVITSIDAE 116

Query: 1397 KRRISLGMK 1405
             RR+SL +K
Sbjct: 117  NRRLSLSIK 125



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 492 PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVTP 548
           PS + + G  V+  ++S  P +RRI+L        P +   +   ++G+ V G V  +T 
Sbjct: 9   PSKLVNPGDTVEVEVLSVDPKARRISLGMKQIQDNPWQTLHE-RYQVGTRVHGRVRNLTD 67

Query: 549 NAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFDQLLV-LDNESSN 602
               + +       G     H++D      ++H +    V+K G E D ++  +D E+  
Sbjct: 68  FGAFIEI-----EDGVDGLVHVSDISWSRRIKHPS---EVLKKGQEIDAVITSIDAENRR 119

Query: 603 LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 662
           L LS K    N+  +     +   P  VV G +      G FV     L G    S+  D
Sbjct: 120 LSLSIKDLEPNAWDRF---LTEHKPGDVVRGKIARFANFGAFVELDDNLEGLCHISELSD 176

Query: 663 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            +         +GQ +   IL ++ E+ +I LS +
Sbjct: 177 ERVEKPEDVVQLGQEMEFKILRIDVESKKIGLSAR 211



 Score = 42.0 bits (97), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 359 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAEL-- 415
           H   + G  V G+V  +  FGA ++   GV  L  +  +S    +K P +  K G E+  
Sbjct: 49  HERYQVGTRVHGRVRNLTDFGAFIEIEDGVDGLVHVSDISWSRRIKHPSEVLKKGQEIDA 108

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
           V   +  +++R++++ K     +    L+ +       +  G I +    G FV   + +
Sbjct: 109 VITSIDAENRRLSLSIKDLEPNAWDRFLTEHKPGD---VVRGKIARFANFGAFVELDDNL 165

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           +G    SEL  +   +P  +  +GQ ++ +I+     S++I LS
Sbjct: 166 EGLCHISELSDERVEKPEDVVQLGQEMEFKILRIDVESKKIGLS 209


>gi|429328605|gb|AFZ80365.1| hypothetical protein BEWA_032180 [Babesia equi]
          Length = 649

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 179/416 (43%), Gaps = 58/416 (13%)

Query: 53  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 112
           F +G  V C VL       E+   ++ LS++ SL+ + LS   +  G++L + V S +DH
Sbjct: 110 FSIGSNVVCYVL-------EVKNGQLVLSMKPSLINRYLSFGNLAPGVLLPSTVISHQDH 162

Query: 113 GYILHF------GLPSFTGFLPRNNLAENSGIDVKPGLLLQG--------VVRSIDRTRK 158
           G ++ F      GL  F  +  R +  E +   V   L+ +         VV S++  RK
Sbjct: 163 GVMVSFNVEDKNGLEGFVMYDERED-GEEARESVVSELVKRYPVSSTAYVVVTSVNEERK 221

Query: 159 VV-----YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI----------LENGV 203
           +V     +L   P +++         +S D + PG+++   V  +          L  G 
Sbjct: 222 IVKCKWPWLHKSPVSINN-------PLSFDAVKPGLLLHGEVSKVHEKSLDYGLSLPTGY 274

Query: 204 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ---HKKVNARILFVDPTSRAVGLTLNPY 260
            +S L   +  +       +F  ++  +D ++   H KV AR+ ++D   + + ++L  +
Sbjct: 275 TISCLGSLSAYIPASDSLESFKDSDEASDSHEPSMHDKVTARVTYIDSAEKRIHVSLLSH 334

Query: 261 LLHNRAPPSHV-KVGDIYDQSKVVR--VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 317
           L+  + P  H  K   + +  KVV+   + GL LL++  S   +   +  I+DV ++  R
Sbjct: 335 LIKWKGPSGHARKAKGLSNTCKVVKNIPNYGLVLLINNESGEGAEVGFAGINDVIDKS-R 393

Query: 318 KLE-------KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 370
            ++       K Y  G+    RIL +          LK S          ++  G VV G
Sbjct: 394 DMKIASVLSGKTYAVGTVHSCRILQYSCFSRWNIVSLKESLLNEQYVDPLELSGGDVVDG 453

Query: 371 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 426
           K+  V + G IV+    V    P+ H+++  + +   +F VG  L  RVL    +R
Sbjct: 454 KITKVLNNGVIVEISTRVHGSVPISHLTQVPLTQIPDRFHVGKTLKLRVLRFDYQR 509


>gi|241896285|ref|ZP_04783581.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
 gi|241870526|gb|EER74277.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
          Length = 405

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 140/280 (50%), Gaps = 38/280 (13%)

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            DIV   +++ + G  GLVV +   + G V  + ++N  V D            L+ Y +G
Sbjct: 114  DIVEAPVTQAVKG--GLVVDV-EGVRGFVPASMIENRFVQD------------LNQY-KG 157

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            Q ++ K++EI+        + LS R   D ++   S+ L+   D          +LS   
Sbjct: 158  QTIRAKIIEINAA---DSRLILSRR---DVLNEERSAALARIFD----------ELSVGD 201

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +++G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  
Sbjct: 202  VIEGKVARMTNFGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPER 260

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ +++K +       +          G ++ G +KRV  +G F+ +    + GL HVS
Sbjct: 261  ERISLSIKATQPGPWDAA----AEKAPAGTVLEGTVKRVVDFGAFVEV-FPGVEGLVHVS 315

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            ++S  H+ N   + +AG+KV+VK+L V+ E++R+SL +K+
Sbjct: 316  QISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSLSIKA 355



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1349
            G+ +  +++ +     R+ ++ +   ++ R+A+ + I     L VGD++ G++ R+ ++G
Sbjct: 157  GQTIRAKIIEINAADSRLILSRRDVLNEERSAALARI--FDELSVGDVIEGKVARMTNFG 214

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             FI +   +  GL HVSE+S + V     +   GE+VKVK+L +D E+ RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPERERISLSIKAT 270



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
           G V++GKV  + +FGA +   GGV  L  +  +S   + +P     VG E+  +VLG+  
Sbjct: 200 GDVIEGKVARMTNFGAFIDL-GGVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDP 258

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           + +RI+++ K T      A        T   +  G + ++   G FV  + GV+G    S
Sbjct: 259 ERERISLSIKATQPGPWDAAAEKAPAGT---VLEGTVKRVVDFGAFVEVFPGVEGLVHVS 315

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++       PS +   G  V+ +++   P  +R++LS 
Sbjct: 316 QISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSLSI 353



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 155/352 (44%), Gaps = 27/352 (7%)

Query: 360 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMS---EFEIVKPGKKFKVGAE 414
           ++VK G VVKG+V+A+D +   IV   G GV+ + PL  ++   + ++    K   V   
Sbjct: 16  AEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDL 75

Query: 415 LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
           +V   +G   +  +    K  ++++ A     ++ +   I    +T+  K G  V    G
Sbjct: 76  VVVSTIGSDKEGGSYLLSKRRLEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDV-EG 134

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSE--- 529
           V+GF P S +  +   +  + Y  GQ ++ +I+    A  R+ LS   ++   R +    
Sbjct: 135 VRGFVPASMI-ENRFVQDLNQYK-GQTIRAKIIEINAADSRLILSRRDVLNEERSAALAR 192

Query: 530 -DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
             D + +G ++ G V  +T     + +   G   G +    ++   E  +    V+  G 
Sbjct: 193 IFDELSVGDVIEGKVARMTNFGAFIDL---GGVDGLVHVSEISH--ERVSQPSDVLSVGE 247

Query: 589 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFV 645
           E   ++L LD E   + LS     I + Q  P DA+       +V+ G V  +++ G FV
Sbjct: 248 EVKVKVLGLDPERERISLS-----IKATQPGPWDAAAEKAPAGTVLEGTVKRVVDFGAFV 302

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
                + G    S+      A+ S     G  V+  +LDVN E  R++LS+K
Sbjct: 303 EVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSLSIK 354



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 30/230 (13%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT--VMKSVIKPGYEF 590
           VK+G +V G V  +  N  V+  I     +G IP   L    +     ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDLVV 77

Query: 591 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
              +  D E  + LLS +   + + +     AS    + +V   V   ++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDVEG- 134

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS +             
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRD------------ 180

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
              L EE+ A L          +  +   +G VIEGKV    +FG  +  
Sbjct: 181 --VLNEERSAALA---------RIFDELSVGDVIEGKVARMTNFGAFIDL 219



 Score = 40.8 bits (94), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 37/185 (20%)

Query: 630 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
           V+ G V  +   G F+  LG + G    S+    + +  S    VG+ V+  +L ++ E 
Sbjct: 202 VIEGKVARMTNFGAFID-LGGVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPER 260

Query: 690 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 749
            RI+LS+K +     DA+                            E    G+V+EG V 
Sbjct: 261 ERISLSIKATQPGPWDAA---------------------------AEKAPAGTVLEGTVK 293

Query: 750 ESNDFGVVVSFEEHSDVYGF-----ITHHQLAGAT--VESGSVIQAAILDVAKAERLVDL 802
              DFG  V  E    V G      I+H  +A  +  +++G  +Q  +LDV    + + L
Sbjct: 294 RVVDFGAFV--EVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSL 351

Query: 803 SLKTV 807
           S+K +
Sbjct: 352 SIKAL 356


>gi|323340744|ref|ZP_08080996.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
 gi|335996765|ref|ZP_08562682.1| 30S ribosomal protein S1 [Lactobacillus ruminis SPM0211]
 gi|417974259|ref|ZP_12615080.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
 gi|323091867|gb|EFZ34487.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
 gi|335351835|gb|EGM53326.1| 30S ribosomal protein S1 [Lactobacillus ruminis SPM0211]
 gi|346329256|gb|EGX97554.1| 30S ribosomal protein S1 [Lactobacillus ruminis ATCC 25644]
          Length = 395

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 95/171 (55%), Gaps = 6/171 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +V+G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL+V+P  
Sbjct: 199  VVEGKVARLTNFGAFIDLG-GVDGLVHVSEISFERVGKPSDVLKVGQDVKVKVLAVDPEK 257

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K    +T  Q   N    +  GD++ G +KR+ S+G F+ +    + GL H+S
Sbjct: 258  DRISLSIK----QTLPQPWDNITEKVAEGDVLEGTVKRLTSFGAFVEV-FPGVEGLVHIS 312

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            ++S  H+     +  +GEKVKVK+L V+ E+ R++L +K+   K  A+  Q
Sbjct: 313  QISHKHIATPNEVLASGEKVKVKVLNVNAEEHRLALSIKALQEKPAAEKKQ 363



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 6/112 (5%)

Query: 1298 RVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
            +++ +EP   R+ ++ K      R A++  +  L  L VGD+V G++ R+ ++G FI + 
Sbjct: 160  KIVELEPSENRLILSHKEIVQQEREANKKAV--LDKLVVGDVVEGKVARLTNFGAFIDLG 217

Query: 1356 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              +  GL HVSE+S + V     + + G+ VKVK+L VD EK RISL +K +
Sbjct: 218  GVD--GLVHVSEISFERVGKPSDVLKVGQDVKVKVLAVDPEKDRISLSIKQT 267



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 14/162 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G  +K  V  V   G +V    GV+   P   +S+   V+   ++K G EL  +++ ++ 
Sbjct: 111 GETIKAPVTQVVKGGLVVD--AGVRGFIPASMVSDH-FVEDLNQYK-GQELELKIVELEP 166

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLIT----HGWITKIEKHGCFVRFYNGVQGF 478
              R+ ++HK+ + + + A   +     D+L+      G + ++   G F+    GV G 
Sbjct: 167 SENRLILSHKEIVQQEREA---NKKAVLDKLVVGDVVEGKVARLTNFGAFIDL-GGVDGL 222

Query: 479 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
              SE+  +   +PS +  VGQ VK ++++  P   RI+LS 
Sbjct: 223 VHVSEISFERVGKPSDVLKVGQDVKVKVLAVDPEKDRISLSI 264



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 153/351 (43%), Gaps = 33/351 (9%)

Query: 362 VKPGMVVKGKVIAVDSFG-AIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           V+ G VVKG+++A D     IV   G GV+ + P   ++    V  G  +KVG EL   V
Sbjct: 19  VEVGDVVKGEILAFDDQKQVIVGIEGTGVEGVVPARELTSG--VDEGA-YKVGDELDLVV 75

Query: 420 LG-VKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
           +  + S +      ++ ++   +     +    EA + +     +T++ K G  V    G
Sbjct: 76  ISKIGSDKEGGSFLLSQRRLAARKVWDDIEKKFEAGETI--KAPVTQVVKGGLVVD--AG 131

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSE--- 529
           V+GF P S +  D   E  + Y  GQ ++ +I+   P+  R+ LS   +++  R +    
Sbjct: 132 VRGFIPASMVS-DHFVEDLNQYK-GQELELKIVELEPSENRLILSHKEIVQQEREANKKA 189

Query: 530 --DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 587
             D LV +G +V G V  +T     + +   G   G +    ++   E       V+K G
Sbjct: 190 VLDKLV-VGDVVEGKVARLTNFGAFIDL---GGVDGLVHVSEIS--FERVGKPSDVLKVG 243

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
            +   ++L +D E   + LS K +L    Q   +    +    V+ G V  +   G FV 
Sbjct: 244 QDVKVKVLAVDPEKDRISLSIKQTL---PQPWDNITEKVAEGDVLEGTVKRLTSFGAFVE 300

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
               + G    S+      A  ++    G+ V+  +L+VN+E  R+ LS+K
Sbjct: 301 VFPGVEGLVHISQISHKHIATPNEVLASGEKVKVKVLNVNAEEHRLALSIK 351


>gi|402313821|ref|ZP_10832731.1| S1 RNA binding domain protein [Lachnospiraceae bacterium ICM7]
 gi|400365603|gb|EJP18654.1| S1 RNA binding domain protein [Lachnospiraceae bacterium ICM7]
          Length = 368

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 178/394 (45%), Gaps = 72/394 (18%)

Query: 1069 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1125
            L E  +  H G+ V G V+ + +++ +L +  +   DGI  ++ + SNDN   ++T ++ 
Sbjct: 10   LDESFKTLHTGEVVNGKVIDVKEDQIILNVGFKS--DGIITRS-EYSNDNGLDLRTVVNV 66

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD +  ++ KI  G G +++      Y R+                 D G       ++ 
Sbjct: 67   GDDMEAKVLKINDGEGQVLLS-----YKRL---------------AQDRGNKKLEDAFNN 106

Query: 1186 GQFVKCKVLEISRTVRGTFHV-----ELSLRSSLDGMSSTNSSDLSTDVDTP-------- 1232
             + +  KV+++   V G   V      + + +SL  +S T   DLS   DT         
Sbjct: 107  HEVLTGKVVQV---VEGGLSVVVEDARVFIPASL--VSDTFERDLSKYKDTEIEFVITEF 161

Query: 1233 ----------------GKHLEK----IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1272
                             K  E+     E ++P  +++G VKNVT  G F+ L    D  +
Sbjct: 162  NPKRRRIIGDRKQLLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVDLG-GADGLL 220

Query: 1273 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1332
             +S +S G VE+P+K F  G  V   +  +    +++ +++K  D      +E       
Sbjct: 221  HISEMSWGRVENPKKVFKSGDTVTAFIKDIS--GEKIALSMKFPDQNPWLDAE----EKF 274

Query: 1333 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1392
              G++V G++ R+  +G F+ I N  +  L HVS++S DHV+    + + G++V+  I++
Sbjct: 275  ARGNVVKGKVARMTDFGAFVEISN-GVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVE 333

Query: 1393 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1426
             ++  ++ISL +K+    N+    + +   ESDE
Sbjct: 334  FNEADKKISLSIKALTQANEELEKENARNSESDE 367



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 17/244 (6%)

Query: 281 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRILG 335
           KVV+V  G GL + +    V  PA + +SD  E ++ K     +E    E +  R RI+G
Sbjct: 113 KVVQVVEG-GLSVVVEDARVFIPASL-VSDTFERDLSKYKDTEIEFVITEFNPKRRRIIG 170

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 395
            R        +L A   E        + PG V++G V  V  FGA V   GG   L  + 
Sbjct: 171 DRKQ------LLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVDL-GGADGLLHIS 223

Query: 396 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 455
            MS   +  P K FK G  +   +  +  ++I ++ K       L     +A      + 
Sbjct: 224 EMSWGRVENPKKVFKSGDTVTAFIKDISGEKIALSMKFPDQNPWLDAEEKFARGN---VV 280

Query: 456 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515
            G + ++   G FV   NGV      S++  D   +PS +  VG  V+  I+    A ++
Sbjct: 281 KGKVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKK 340

Query: 516 INLS 519
           I+LS
Sbjct: 341 ISLS 344



 Score = 47.8 bits (112), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 49/342 (14%)

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDDL 532
           G   RSE   D G +  ++ +VG  ++ +++       ++ LS+      +  +  ED  
Sbjct: 45  GIITRSEYSNDNGLDLRTVVNVGDDMEAKVLKINDGEGQVLLSYKRLAQDRGNKKLEDAF 104

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
                L   VV VV     VV   A+ +    IP   ++D  E    +        EF  
Sbjct: 105 NNHEVLTGKVVQVVEGGLSVVVEDARVF----IPASLVSDTFERD--LSKYKDTEIEF-- 156

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++   N     ++  +  L+ + ++    A    I P  V+ G V N+ + G FV  LG 
Sbjct: 157 VITEFNPKRRRIIGDRKQLLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVD-LGG 215

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
             G    S+   G+  +  K +  G +V + I D++ E  +I LS+K          F  
Sbjct: 216 ADGLLHISEMSWGRVENPKKVFKSGDTVTAFIKDISGE--KIALSMK----------FPD 263

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
           ++  L+ +                 E F  G+V++GKV    DFG  V      D    +
Sbjct: 264 QNPWLDAE-----------------EKFARGNVVKGKVARMTDFGAFVEISNGVDALLHV 306

Query: 771 T-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 807
           +     H +     ++ G  ++A I++  +A++ + LS+K +
Sbjct: 307 SQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKKISLSIKAL 348


>gi|289550745|ref|YP_003471649.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis HKU09-01]
 gi|315658241|ref|ZP_07911113.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590]
 gi|385784373|ref|YP_005760546.1| putative 30S ribosomal protein S1 [Staphylococcus lugdunensis
            N920143]
 gi|418414047|ref|ZP_12987263.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis ACS-027-V-Sch2]
 gi|289180277|gb|ADC87522.1| SSU ribosomal protein S1p [Staphylococcus lugdunensis HKU09-01]
 gi|315496570|gb|EFU84893.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590]
 gi|339894629|emb|CCB53913.1| putative 30S ribosomal protein S1 [Staphylococcus lugdunensis
            N920143]
 gi|410877685|gb|EKS25577.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis ACS-027-V-Sch2]
          Length = 392

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 30/197 (15%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            ++ L+   +++G V  +T+ G FI +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 188  LDSLNAGDVIKGKVARLTNFGAFIDIG-GVDGLVHVSELSHEHVDSPEDVVSVGQEVEVK 246

Query: 1299 VLSVEPLSKRVEV----TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1354
            V SVE  S+R+ +    TL T   R   Q         H GD++ G + R+ ++G F+ +
Sbjct: 247  VKSVEKDSERISLSIKDTLPTPFERIKGQ--------FHEGDVIEGTVVRLAAFGAFVEV 298

Query: 1355 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS-------- 1406
                + GL H+SE+   H+ +       G++V VKIL VD++  RISL +K+        
Sbjct: 299  A-PGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVDEDNERISLSIKATLPNEDVI 357

Query: 1407 --------SYFKNDADN 1415
                    SY  ND+D+
Sbjct: 358  ESDEATTQSYIDNDSDD 374



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 94/170 (55%), Gaps = 10/170 (5%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
            E L+ + +++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLNNDEVIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIKI 156

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +V  +EP   RV ++ K  +       + + L +L+ GD++ G++ R+ ++G FI I   
Sbjct: 157  KVEELEPEKNRVILSRKAVEQAENEVKKASLLDSLNAGDVIKGKVARLTNFGAFIDIGGV 216

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  GL HVSELS +HVD+ E +   G++V+VK+  V+K+  RISL +K +
Sbjct: 217  D--GLVHVSELSHEHVDSPEDVVSVGQEVEVKVKSVEKDSERISLSIKDT 264



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 24/260 (9%)

Query: 279 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 332
           ++KV  V +G GL++D+      P++ +ST  ++    V + +  K++ +  E    RV 
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTD-FIEDFSVFDGQTIKIKVEELEPEKNRV- 168

Query: 333 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 392
           IL  + +E     + KAS  + L         G V+KGKV  + +FGA +   GGV  L 
Sbjct: 169 ILSRKAVEQAENEVKKASLLDSL-------NAGDVIKGKVARLTNFGAFIDI-GGVDGLV 220

Query: 393 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT 450
            +  +S   +  P     VG E+  +V  V+  S+RI+++ K TL      I   + E  
Sbjct: 221 HVSELSHEHVDSPEDVVSVGQEVEVKVKSVEKDSERISLSIKDTLPTPFERIKGQFHEGD 280

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
              +  G + ++   G FV    GVQG    SE+       PS     GQ V  +I+   
Sbjct: 281 ---VIEGTVVRLAAFGAFVEVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVD 337

Query: 511 PASRRINLSFMMKPTRVSED 530
             + RI+LS  +K T  +ED
Sbjct: 338 EDNERISLS--IKATLPNED 355



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +D+K G  + G+V  V+    +V   GG    + P+  +S   I  P +   VG  +   
Sbjct: 11  NDIKEGDKITGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIDNPNEVVSVGDSIEAY 70

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEVDEENESGAYILSKRQLETEKSYEYLQEKLNNDEVIEAKVTEVVKGGLVVDV--G 128

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
            +GF P S +  D   E  S++  GQ +K ++    P   R+ LS   K    +E+++ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIKIKVEELEPEKNRVILS--RKAVEQAENEVKK 184

Query: 535 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASLLDSLNAGDVIKGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVDSPEDVVSV 239

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
           G E + ++  ++ +S  + LS K +L    +++       H   V+ G V  +   G FV
Sbjct: 240 GQEVEVKVKSVEKDSERISLSIKDTLPTPFERI---KGQFHEGDVIEGTVVRLAAFGAFV 296

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
                + G    S+         S+    GQ V   IL V+ +  RI+LS+K + 
Sbjct: 297 EVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVDEDNERISLSIKATL 351



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
           G V++G V+ + +FGA V+   GV+ L  +  +    I  P +K + G ++  ++LGV  
Sbjct: 279 GDVIEGTVVRLAAFGAFVEVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVDE 338

Query: 423 KSKRITVTHKKTL-----VKSKLAILSSY 446
            ++RI+++ K TL     ++S  A   SY
Sbjct: 339 DNERISLSIKATLPNEDVIESDEATTQSY 367


>gi|333919158|ref|YP_004492739.1| RNA binding S1 domain-containing protein [Amycolicicoccus subflavus
            DQS3-9A1]
 gi|333481379|gb|AEF39939.1| RNA binding S1 domain protein [Amycolicicoccus subflavus DQS3-9A1]
          Length = 489

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 183/408 (44%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + +++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 11   VAINDIGSAEEFLAAVDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 70

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +PSE+       ++G  V   VL+  KE K  RL+L   +        + +   ++
Sbjct: 71   KHDVDPSEV------VNVGDEVEALVLT--KEDKDGRLILSKKR-----AQYERAWGTIE 117

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 118  ELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 168

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 169  --------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 204

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L  + + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 205  QLQKSQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVL 263

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 264  DVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GI 317

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HV+  + +    +   VK++ +D E+RRISL +K +
Sbjct: 318  EGLVHISELAERHVEVPDQVVAVNDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 147/364 (40%), Gaps = 50/364 (13%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 513
           I  G I K+++    +      +G  P  EL +    +PS + +VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKEDKD 97

Query: 514 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-IHPN 628
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  H +  +
Sbjct: 150 ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKS 209

Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
            V  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 301

Query: 749 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAA-------ILDVAKAERLVD 801
            +   FG  V  EE   + G +   +LA   VE    + A        ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVNDDAMVKVIDIDLERRRIS 359

Query: 802 LSLK 805
           LSLK
Sbjct: 360 LSLK 363



 Score = 43.9 bits (102), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 147/354 (41%), Gaps = 31/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
              +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KSQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            G    S+  +       +   V       ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVNDDAMVKVIDIDLERRRISLSLKQANEEYTE 371


>gi|385812293|ref|YP_005848684.1| 30S ribosomal protein S1 [Lactobacillus fermentum CECT 5716]
 gi|299783190|gb|ADJ41188.1| 30S ribosomal protein S1 [Lactobacillus fermentum CECT 5716]
          Length = 410

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 91/160 (56%), Gaps = 6/160 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +V+G V  +T+ G FI L   +D  V +S +S  +V+ P     +G+ V  +VL+V+P  
Sbjct: 203  VVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPER 261

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ +++K +        E        VG ++ G +KR+ S+G F+ +    + GL H+S
Sbjct: 262  ERISLSIKQTLPGPWDDIE----EKAAVGTVLTGTVKRLTSFGAFVEV-FPGVEGLVHIS 316

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            ++S  H+     +  AG++VKVK+L VD E++R+ L +K+
Sbjct: 317  QISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKA 356



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 1275 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1334
            S ++D YVE    +F  G+ +  +++ +EP   R+ ++ K        ++     S L  
Sbjct: 143  SMITDHYVEDL-NQFK-GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELVA 200

Query: 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1394
            GD+V G++ R+ ++G FI +   +  GL HVSE+S DHVD    +   G++VKVK+L VD
Sbjct: 201  GDVVEGKVARMTNFGAFIDLGGVD--GLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVD 258

Query: 1395 KEKRRISLGMKSS 1407
             E+ RISL +K +
Sbjct: 259  PERERISLSIKQT 271



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
           I++A   E      S++  G VV+GKV  + +FGA +   GGV  L  +  +S   + KP
Sbjct: 182 IVQAQHEEAAKKIFSELVAGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKP 240

Query: 406 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
               +VG E+  +VL V  + +RI+++ K+TL      I    A  T   +  G + ++ 
Sbjct: 241 ADVLEVGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAVGT---VLTGTVKRLT 297

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             G FV  + GV+G    S++       P+ +   GQ VK ++++  P  +R+ LS 
Sbjct: 298 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSI 354



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 140/355 (39%), Gaps = 63/355 (17%)

Query: 473 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 529
           +GV+G  P ++L   P    + +  VG  +   ++S I  S + N S+++   R+     
Sbjct: 46  SGVEGVVPANQLSTKPVDNINDVVKVGDELDLVVISKI-GSDKENGSYLLSHRRLEAMKV 104

Query: 530 --------DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 581
                   DD    G  ++  V       +VV    +G+   ++ T+H  + L       
Sbjct: 105 WNEIQKKFDD----GETITATVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK--- 157

Query: 582 SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNII 639
                G E +  ++    S N L+ +   ++ +  +  +    S +    VV G V  + 
Sbjct: 158 -----GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELVAGDVVEGKVARMT 212

Query: 640 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
             G F+  LG + G    S+         +    VGQ V+  +L+V+ E  RI+LS+KQ+
Sbjct: 213 NFGAFID-LGGVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPERERISLSIKQT 271

Query: 700 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 759
                D         +EEK A                   +G+V+ G V     FG  V 
Sbjct: 272 LPGPWDD--------IEEKAA-------------------VGTVLTGTVKRLTSFGAFV- 303

Query: 760 FEEHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 807
            E    V G      I+H  +A     +E+G  ++  +L+V    + + LS+K +
Sbjct: 304 -EVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKAL 357



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 34/197 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD+V G+++++ +   G  + +G  + G VH +E+           YD     P    + 
Sbjct: 201  GDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEIS----------YDHVD-KPADVLEV 246

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KVL +         + LS++ +L G               P   +E  E  +  
Sbjct: 247  GQEVKVKVLNVDPERE---RISLSIKQTLPG---------------PWDDIE--EKAAVG 286

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+V+P 
Sbjct: 287  TVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPE 346

Query: 1306 SKRVEVTLKTSDSRTAS 1322
             +R+ +++K  +   A 
Sbjct: 347  RQRLGLSIKALEEAPAG 363


>gi|70726436|ref|YP_253350.1| 30S ribosomal protein S1 [Staphylococcus haemolyticus JCSC1435]
 gi|84029458|sp|Q4L6I1.1|RS1_STAHJ RecName: Full=30S ribosomal protein S1
 gi|68447160|dbj|BAE04744.1| 30S ribosomal protein S1 [Staphylococcus haemolyticus JCSC1435]
          Length = 392

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 6/174 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +E L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 188  LESLNAGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVDSPEDVVSVGQEVDVK 246

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            V SVE  ++R+ +++K  D+       I      H  D++ G++ R+ ++G F+ I    
Sbjct: 247  VKSVEKDAERISLSIK--DTLPTPFESIK--GQFHEDDVIEGKVVRLANFGAFVEIA-PG 301

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            + GL H+SE++ +H+         G++V VKIL +D+E  RISL +K++  K D
Sbjct: 302  VQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKED 355



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 93/170 (54%), Gaps = 10/170 (5%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
            E L  + I++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 103  EKLDNDEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +V  ++P + RV ++ K  +       + + L +L+ GD++ G++ R+ ++G F+ I   
Sbjct: 157  KVEELDPENNRVILSRKAVEQAENDVKKASLLESLNAGDVIKGKVARLTNFGAFVDIGGV 216

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  GL HVSELS +HVD+ E +   G++V VK+  V+K+  RISL +K +
Sbjct: 217  D--GLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDT 264



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 119/261 (45%), Gaps = 26/261 (9%)

Query: 279 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 331
           ++KV  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
            IL  + +E     + KAS  E L         G V+KGKV  + +FGA V   GGV  L
Sbjct: 169 -ILSRKAVEQAENDVKKASLLESL-------NAGDVIKGKVARLTNFGAFVDI-GGVDGL 219

Query: 392 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 449
             +  +S   +  P     VG E+  +V  V+  ++RI+++ K TL     +I   + E 
Sbjct: 220 VHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHED 279

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
               +  G + ++   G FV    GVQG    SE+  +    P      GQ V  +I+  
Sbjct: 280 D---VIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGI 336

Query: 510 IPASRRINLSFMMKPTRVSED 530
              + RI+LS  +K T   ED
Sbjct: 337 DEENERISLS--IKATLPKED 355



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 150/367 (40%), Gaps = 33/367 (8%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAY 70

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           V  ++      +    L K +L    SY    ++L    I    +T++ K G  V    G
Sbjct: 71  VTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDV--G 128

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQAENDVKK 184

Query: 535 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
                    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 185 ASLLESLNAGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVDSPEDVVSV 239

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
           G E D ++  ++ ++  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 240 GQEVDVKVKSVEKDAERISLSIKDTLPTPFESI---KGQFHEDDVIEGKVVRLANFGAFV 296

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL-----KQSC 700
                + G    S+          +    GQ V   IL ++ E  RI+LS+     K+  
Sbjct: 297 EIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKEDV 356

Query: 701 CSSTDAS 707
             S DA+
Sbjct: 357 VESDDAT 363



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 162/396 (40%), Gaps = 80/396 (20%)

Query: 93  LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 148
           +  ++EG  +T  V+ +ED   ++H     F G +P + L+    EN    VK G  ++ 
Sbjct: 10  INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEA 69

Query: 149 VV------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL-- 184
            V                  R ++  +   YL    D    +   VT+ +KG + +D+  
Sbjct: 70  YVTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDVGQ 129

Query: 185 --LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 242
              VP  ++ST           +   + F G      ++   P  N             R
Sbjct: 130 RGFVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------R 167

Query: 243 ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 302
           ++    + +AV    N   +   +    +  GD+  + KV R+    G  +DI       
Sbjct: 168 VIL---SRKAVEQAEND--VKKASLLESLNAGDVI-KGKVARL-TNFGAFVDIGGVD--- 217

Query: 303 PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL--VF 357
              V +S+++ E V   E     G  V V++    +  E ++  I     + FE +   F
Sbjct: 218 -GLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQF 276

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
              DV     ++GKV+ + +FGA V+   GV+ L  +  ++   I  PG+K + G ++  
Sbjct: 277 HEDDV-----IEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNV 331

Query: 418 RVLGV--KSKRITVTHKKTL-----VKSKLAILSSY 446
           ++LG+  +++RI+++ K TL     V+S  A   SY
Sbjct: 332 KILGIDEENERISLSIKATLPKEDVVESDDATTQSY 367



 Score = 45.1 bits (105), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 117/290 (40%), Gaps = 55/290 (18%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKQGDEIEA 69

Query: 593 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 643
            +    +D E+     S  Y L  S +QL ++ S+      +  + ++   V  +++ G 
Sbjct: 70  YVTKIEVDEEND----SGVYIL--SKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGL 123

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    + 
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQAE 179

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
            D           +K ++L+S                G VI+GKV    +FG  V     
Sbjct: 180 NDV----------KKASLLES-------------LNAGDVIKGKVARLTNFGAFVDI--- 213

Query: 764 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
             V G +   +L+   V+S         DV    + VD+ +K+V  D  R
Sbjct: 214 GGVDGLVHVSELSHEHVDSPE-------DVVSVGQEVDVKVKSVEKDAER 256


>gi|374612566|ref|ZP_09685343.1| RNA binding S1 domain protein [Mycobacterium tusciae JS617]
 gi|373547477|gb|EHP74202.1| RNA binding S1 domain protein [Mycobacterium tusciae JS617]
          Length = 515

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 98/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 38   SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 97

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 98   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 144

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 145  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 201

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 202  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 235

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 236  ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 290

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 291  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 345

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SELSE HV+  + + +  +   VK++ +D E+RRISL +K +
Sbjct: 346  VEE-GIEGLVHISELSERHVEVPDQVVQVNDDAMVKVIDIDLERRRISLSLKQA 398



 Score = 47.8 bits (112), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 152/382 (39%), Gaps = 50/382 (13%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 67  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 126

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 127 EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 185

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 186 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 238

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 239 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 297

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 298 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 330

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-SGSVIQ------AAILDVAKAE 797
            GKV +   FG  V  EE   + G +   +L+   VE    V+Q        ++D+    
Sbjct: 331 PGKVTKLVPFGAFVRVEE--GIEGLVHISELSERHVEVPDQVVQVNDDAMVKVIDIDLER 388

Query: 798 RLVDLSLKTVFIDRFREANSNR 819
           R + LSLK    D   E + ++
Sbjct: 389 RRISLSLKQANEDYTEEFDPSK 410



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 69  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 128

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 129 KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 184

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 185 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 240

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 241 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 294

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 295 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 350

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   V       ++D++ E  RI+LSLKQ+    T+      
Sbjct: 351 EGLVHISELSERHVEVPDQVVQVNDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 405

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 406 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 440


>gi|302787028|ref|XP_002975284.1| hypothetical protein SELMODRAFT_415445 [Selaginella moellendorffii]
 gi|300156858|gb|EFJ23485.1| hypothetical protein SELMODRAFT_415445 [Selaginella moellendorffii]
          Length = 180

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 63/96 (65%), Gaps = 5/96 (5%)

Query: 1318 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV----GLCHVSELSEDHV 1373
            + T SQ + N       G+IV G I  +E++G+FI++  +N+      LCHVSE+S D +
Sbjct: 4    AATTSQ-DSNGWKKFGAGEIVSGCIHNIEAFGIFISLAKSNVSVLQGCLCHVSEVSYDFI 62

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
             ++ T+ + G+ V+VKILKVD E +RISLGMK+SY 
Sbjct: 63   QDLSTLCKVGQWVQVKILKVDAETKRISLGMKASYL 98



 Score = 40.8 bits (94), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 25/30 (83%), Gaps = 1/30 (3%)

Query: 1524 AAEERLLEKD-APRTPDEFERLVRSSPNSS 1552
            AA+E+LL+KD  P T D+FERLV +SPNSS
Sbjct: 149  AAKEQLLQKDQPPETKDDFERLVAASPNSS 178


>gi|357398732|ref|YP_004910657.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
            46488]
 gi|386354772|ref|YP_006053018.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
            46488]
 gi|337765141|emb|CCB73850.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
            46488]
 gi|365805280|gb|AEW93496.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
            46488]
          Length = 498

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 187/416 (44%), Gaps = 66/416 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-G 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 375



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|421074415|ref|ZP_15535447.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
            fermentans JBW45]
 gi|392527456|gb|EIW50550.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Pelosinus
            fermentans JBW45]
          Length = 655

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 101/184 (54%), Gaps = 8/184 (4%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E    L+   IV G V+ +   G FI +   +D  V +S+LS   V+SP++   +G  V 
Sbjct: 456  ETFSKLAVGQIVSGTVRRIVDFGAFIDIG-GIDGLVHISDLSWHRVKSPQEIVALGDQVK 514

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
              +L ++  +K++ ++LK           ++ +    VG IV G++ ++  +G FI +  
Sbjct: 515  VLILKIDNEAKKISLSLK----EVGRDPWLDLIEQYSVGAIVKGKVTKITKFGAFIEL-V 569

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1416
              + GL H+SELS++ V+ +E +   G++V VKIL++ KE +RISL +  S  + DA+ +
Sbjct: 570  PGIEGLVHMSELSDERVNKVEDVVAVGQEVTVKILEISKENKRISLSI--SKAQQDAERV 627

Query: 1417 QMSS 1420
            +  S
Sbjct: 628  EYQS 631



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           T S +  G +V G V  +  FGA +   GG+  L  +  +S   +  P +   +G ++  
Sbjct: 457 TFSKLAVGQIVSGTVRRIVDFGAFIDI-GGIDGLVHISDLSWHRVKSPQEIVALGDQVKV 515

Query: 418 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
            +L +  ++K+I+++ K+      L ++  Y+      I  G +TKI K G F+    G+
Sbjct: 516 LILKIDNEAKKISLSLKEVGRDPWLDLIEQYSVGA---IVKGKVTKITKFGAFIELVPGI 572

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           +G    SEL  +   +   +  VGQ V  +I+     ++RI+LS 
Sbjct: 573 EGLVHMSELSDERVNKVEDVVAVGQEVTVKILEISKENKRISLSI 617



 Score = 47.4 bits (111), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 116/259 (44%), Gaps = 36/259 (13%)

Query: 744 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-----GSVIQAAILDVAKAER 798
           +E KV E  + G+ VS      ++GF+   Q+    VE      G  +    ++V + ++
Sbjct: 380 VEAKVLEVVNGGLKVSV---LGIHGFVPASQVELRFVEDLSPFKGQTLTFQPIEVDRIKK 436

Query: 799 LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 858
            V LS K +            Q Q++  + E    L V Q V+  V  + +    + +  
Sbjct: 437 RVILSRKVIL-----------QEQRRILEEETFSKLAVGQIVSGTVRRIVDFGAFIDIGG 485

Query: 859 YNHSIGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 916
            +   G   +SD  ++  K PQ+    G  V   V+ L   + A ++ L LK     E  
Sbjct: 486 ID---GLVHISDLSWHRVKSPQEIVALGDQV--KVLILKIDNEAKKISLSLK-----EVG 535

Query: 917 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 976
                     Y VG++V+ ++T+I      ++   G  G +H++E++D++ N VE++ + 
Sbjct: 536 RDPWLDLIEQYSVGAIVKGKVTKITKFGAFIELVPGIEGLVHMSELSDERVNKVEDVVA- 594

Query: 977 FKIGQTVTARI--IAKSNK 993
             +GQ VT +I  I+K NK
Sbjct: 595 --VGQEVTVKILEISKENK 611



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSED 530
           G+ GF P S++ L    E  S +  GQ +  + +      +R+ LS    + +  R+ E+
Sbjct: 398 GIHGFVPASQVELRF-VEDLSPFK-GQTLTFQPIEVDRIKKRVILSRKVILQEQRRILEE 455

Query: 531 DL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 587
           +    + +G +VSG V  +      + +   G   G +    L+ H       + ++  G
Sbjct: 456 ETFSKLAVGQIVSGTVRRIVDFGAFIDI---GGIDGLVHISDLSWH--RVKSPQEIVALG 510

Query: 588 YEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
            +   L++ +DNE+  + LS K    +    L    S     ++V G V  I + G F+ 
Sbjct: 511 DQVKVLILKIDNEAKKISLSLKEVGRDPWLDLIEQYS---VGAIVKGKVTKITKFGAFIE 567

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            +  + G    S+  D +   +     VGQ V   IL+++ E  RI+LS+ ++
Sbjct: 568 LVPGIEGLVHMSELSDERVNKVEDVVAVGQEVTVKILEISKENKRISLSISKA 620


>gi|395237266|ref|ZP_10415353.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
 gi|423350857|ref|ZP_17328509.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
 gi|394487499|emb|CCI83441.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
 gi|404387158|gb|EJZ82283.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
          Length = 481

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 184/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS   F    D +I     G  V G V K+D++  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEDFLAAVDETIKYFNDGDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P E+ E      +G  V   VL+  KE K  RL+L   +        DI     +
Sbjct: 69   KHDVDPDEVVE------LGDEVDALVLT--KEDKDGRLILSKKRAQYERAWGDI-----E 115

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                  + V G + +++ G  GL++ IG   +      E++ +   +P  G +       
Sbjct: 116  RLKENDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLEPYIGAE------- 166

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 167  --------LEAKIIELDKHRN---NVVLSRRAWLEQTQSEVRSEF-------------LH 202

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL
Sbjct: 203  QLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVNVGDEVTVEVL 261

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      +      +  H VG IV G++ ++  +G F+ + +  +
Sbjct: 262  DVDLDRERVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGSFVRV-DEGI 315

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL++ HVD  + I   GE++ VK++ +D E+RRISL +K +
Sbjct: 316  EGLVHISELAQRHVDVPDQIVTVGEELMVKVIDIDLERRRISLSLKQA 363



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVNVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGSFVRVDEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
           ++G    SEL       P  +  VG+ +  +++      RRI+LS        +E+
Sbjct: 315 IEGLVHISELAQRHVDVPDQIVTVGEELMVKVIDIDLERRRISLSLKQADDDFTEE 370



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 164/398 (41%), Gaps = 50/398 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ +D    ++      + + P   +S    V P +  ++G E+   VL  + 
Sbjct: 34  GDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVELGDEVDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KDGRLILSKKRAQYERAWGDIERLKE-NDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      EP    ++G  ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGAELEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVNVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGSFVRVDEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+          +   VG+ +   ++D++ E  RI+LSLKQ+     D  F +
Sbjct: 315 IEGLVHISELAQRHVDVPDQIVTVGEELMVKVIDIDLERRRISLSLKQA-----DDDFTE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGY 405


>gi|312139898|ref|YP_004007234.1| 30S ribosomal protein s1 rpsa [Rhodococcus equi 103S]
 gi|311889237|emb|CBH48551.1| 30S ribosomal protein S1 RpsA [Rhodococcus equi 103S]
          Length = 490

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVGVGDDALVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 788
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVGVGDDALV 346

Query: 789 AILDVAKAERLVDLSLK 805
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 47.0 bits (110), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 318 EGLVHISELAERHVEVPDQVVGVGDDALVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 375

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 376 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|116629547|ref|YP_814719.1| 30S ribosomal protein S1 [Lactobacillus gasseri ATCC 33323]
 gi|238852697|ref|ZP_04643107.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4]
 gi|282852070|ref|ZP_06261428.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1]
 gi|311110810|ref|ZP_07712207.1| ribosomal protein S1 [Lactobacillus gasseri MV-22]
 gi|420147301|ref|ZP_14654577.1| 30S ribosomal protein S1 [Lactobacillus gasseri CECT 5714]
 gi|116095129|gb|ABJ60281.1| SSU ribosomal protein S1P [Lactobacillus gasseri ATCC 33323]
 gi|238834843|gb|EEQ27070.1| putative 30S ribosomal protein S1 [Lactobacillus gasseri 202-4]
 gi|282556830|gb|EFB62434.1| 30S ribosomal protein S1 [Lactobacillus gasseri 224-1]
 gi|311065964|gb|EFQ46304.1| ribosomal protein S1 [Lactobacillus gasseri MV-22]
 gi|398401302|gb|EJN54804.1| 30S ribosomal protein S1 [Lactobacillus gasseri CECT 5714]
          Length = 399

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 10/175 (5%)

Query: 1237 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +V+ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHVDKPSDVLKAG 244

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G F+
Sbjct: 245  QDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFV 300

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             + +  + GL HVSE++  HVD    + + G+ VKVK+L VD   RRISL +K +
Sbjct: 301  EVAD-GIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   + KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHVDKPSD 239

Query: 408 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 461
             K G ++  +V+G+   R  I+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDRHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 462 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           +   G FV   +G+QG    SE+      +PS +  VGQ VK +++S  P+ RRI+LS 
Sbjct: 293 LTSFGAFVEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSI 351



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 10/175 (5%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            K LEK+        V+G V      G  + + +R      L+SN    YV S  K + IG
Sbjct: 103  KELEKV--FEEGKTVEGTVTGAVRGGLLVDVGTRGFLPASLISNR---YV-SDLKPY-IG 155

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            K +  ++  ++P   R+ ++ K    +   ++  N  S L VGD V G++ R+  +G F+
Sbjct: 156  KKMNLKITEIDPNKNRLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFGAFV 215

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             +   +  GL H+SE+S  HVD    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 216  DVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQT 268



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 38/245 (15%)

Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
            +IGK +   +  I+  K   RL+L   +  + +K  + + +N+ + +  GD V G++S+ 
Sbjct: 153  YIGKKMNLKITEIDPNKN--RLILS--RKDLIEKEREEAFENVASQLVVGDTVEGKVSR- 207

Query: 1137 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEI 1196
            L+G G  V   G  + G VH +E+    V  P         D L     GQ VK KV+ I
Sbjct: 208  LTGFGAFVDVGG--VDGLVHISEISYKHVDKP--------SDVLKA---GQDVKVKVIGI 254

Query: 1197 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1256
                     + LS++ +L                 P    E  E L    I++G VK +T
Sbjct: 255  DDD---RHRISLSIKQTL-----------------PSPFEEATEGLHEGDIIEGEVKTLT 294

Query: 1257 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316
            S G F+ ++  +   V +S +++ +V+ P     +G+ V  +VLSV+P  +R+ +++K +
Sbjct: 295  SFGAFVEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDPSDRRISLSIKQA 354

Query: 1317 DSRTA 1321
            D   A
Sbjct: 355  DPNAA 359



 Score = 45.4 bits (106), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 515 RINLS---FMMKPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS    + K    + +++     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEKEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             ++ G V  +   G FV     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFVEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLSVDP 342

Query: 688 ETGRITLSLKQS 699
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354


>gi|392955741|ref|ZP_10321271.1| 30S ribosomal protein S1 [Bacillus macauensis ZFHKF-1]
 gi|391877983|gb|EIT86573.1| 30S ribosomal protein S1 [Bacillus macauensis ZFHKF-1]
          Length = 381

 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 6/185 (3%)

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
             K   ++  L P  ++ G V+ +T+ G F+ L   +D  V +S LS   VE P +    G
Sbjct: 177  AKKQNRLSALEPGQVITGTVRRMTNFGAFVDLG-GIDGLVHISQLSYQRVEHPSEVVEEG 235

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            + VA +VLSV+  + RV +++K  D +    + +   + +  G IV G +KR+ ++G F+
Sbjct: 236  QEVAVKVLSVDRDNDRVSLSIK--DVQPGPWASLP--ATIASGAIVTGTVKRLTTFGAFV 291

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
             +   N+ GL H+SE+S  H+     +   GE V VKIL++    +R+SL MK+     +
Sbjct: 292  EVA-PNVEGLVHISEMSSRHIGKPSEVVSVGETVTVKILELTVADKRMSLSMKAVEEAEN 350

Query: 1413 ADNLQ 1417
            A +++
Sbjct: 351  AADIK 355



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S ++PG V+ G V  + +FGA V   GG+  L  +  +S   +  P +  + G E+  +V
Sbjct: 184 SALEPGQVITGTVRRMTNFGAFVDL-GGIDGLVHISQLSYQRVEHPSEVVEEGQEVAVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   + R++++ K        ++ ++ A      I  G + ++   G FV     V+G
Sbjct: 243 LSVDRDNDRVSLSIKDVQPGPWASLPATIASGA---IVTGTVKRLTTFGAFVEVAPNVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SE+      +PS +  VG+ V  +I+    A +R++LS 
Sbjct: 300 LVHISEMSSRHIGKPSEVVSVGETVTVKILELTVADKRMSLSM 342



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 153/360 (42%), Gaps = 20/360 (5%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G + +G V+ ++   AI+       A+ P+  +S   +       +VG  +  +VL +  
Sbjct: 18  GEITEGTVLKIEDKLAILDVKYKQDAILPINEVSNVAVDHVSDVLQVGDRVTVKVLAMSD 77

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
           +++TV+ K     S  + L +  E+ +  +    +  + K G       GV+GF P S +
Sbjct: 78  EQLTVSKKAVDSVSSWSELHAKLESQE--VFSVTVLDVVKGGLVADV--GVRGFIPASMV 133

Query: 485 GLDPGCEPSSMYHVGQVVKCRIM----SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 540
                 + SS  +    VK   +    + +  S RI L       + +    ++ G +++
Sbjct: 134 DTAFIDDFSSFKNKTLTVKVVELDQEKNRVILSHRIVLEEEEAAKKQNRLSALEPGQVIT 193

Query: 541 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDN 598
           G V  +T     V +   G   G +    L+   +EH +    V++ G E   ++L +D 
Sbjct: 194 GTVRRMTNFGAFVDL---GGIDGLVHISQLSYQRVEHPS---EVVEEGQEVAVKVLSVDR 247

Query: 599 ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 658
           ++  + LS K         LP   + I   ++V G V  +   G FV     + G    S
Sbjct: 248 DNDRVSLSIKDVQPGPWASLP---ATIASGAIVTGTVKRLTTFGAFVEVAPNVEGLVHIS 304

Query: 659 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 718
           +         S+   VG++V   IL++     R++LS+K +   + +A+ ++E+F  EEK
Sbjct: 305 EMSSRHIGKPSEVVSVGETVTVKILELTVADKRMSLSMK-AVEEAENAADIKENFPKEEK 363


>gi|406838677|ref|ZP_11098271.1| 30S ribosomal protein S1 [Lactobacillus vini DSM 20605]
          Length = 405

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 111/213 (52%), Gaps = 10/213 (4%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  E +  L+   +V+G V  +T+ G F+ L   +D  V +S ++   V+ P     +G+
Sbjct: 190  KKAETLAKLAAGDVVEGKVARLTNFGAFVDLG-GVDGLVHVSEIAFERVDKPSDVLKVGQ 248

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             V  +VLSV+P  +RV +++K    +T  Q        +  GD++ G +KR+ S+G F+ 
Sbjct: 249  EVKVKVLSVDPDKERVSLSIK----QTLPQPWDQVSEKIAEGDVIEGTVKRLTSFGAFVE 304

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
            +    + GL H+S++S  H+     +  +GEK+KVK+L V  E+ R+ L +K+   K  A
Sbjct: 305  V-LPGVEGLVHISQISHKHIATPNEVLTSGEKIKVKVLSVHPEQHRLGLSIKALEEKPVA 363

Query: 1414 DNLQMSSEEESDEAI----EEVGSYNRSSLLEN 1442
               +  + +++D ++    EE   +    L+ N
Sbjct: 364  GETKKLAAKKTDSSVANAPEESTGFTLGDLVGN 396



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 79/135 (58%), Gaps = 8/135 (5%)

Query: 1275 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNL 1332
            S + D YVE    +F  G+ +  +++ +EP   R+ ++ K      R A ++E   L+ L
Sbjct: 143  SMIEDHYVEDL-NQFK-GQTLELKIIEIEPSENRLILSHKEIVKAEREAKKAE--TLAKL 198

Query: 1333 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1392
              GD+V G++ R+ ++G F+ +   +  GL HVSE++ + VD    + + G++VKVK+L 
Sbjct: 199  AAGDVVEGKVARLTNFGAFVDLGGVD--GLVHVSEIAFERVDKPSDVLKVGQEVKVKVLS 256

Query: 1393 VDKEKRRISLGMKSS 1407
            VD +K R+SL +K +
Sbjct: 257  VDPDKERVSLSIKQT 271



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE--FEIV-KPGKKFKVGAE 414
           T + +  G VV+GKV  + +FGA V   GGV  L    H+SE  FE V KP    KVG E
Sbjct: 194 TLAKLAAGDVVEGKVARLTNFGAFVDL-GGVDGLV---HVSEIAFERVDKPSDVLKVGQE 249

Query: 415 LVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 472
           +  +VL V    +R++++ K+TL +    +    AE     +  G + ++   G FV   
Sbjct: 250 VKVKVLSVDPDKERVSLSIKQTLPQPWDQVSEKIAEGD---VIEGTVKRLTSFGAFVEVL 306

Query: 473 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
            GV+G    S++       P+ +   G+ +K +++S  P   R+ LS 
Sbjct: 307 PGVEGLVHISQISHKHIATPNEVLTSGEKIKVKVLSVHPEQHRLGLSI 354



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 142/353 (40%), Gaps = 59/353 (16%)

Query: 473 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 529
            GV+G  P  EL + PG + +    VG V    ++S I  S +   S+++   R+     
Sbjct: 46  TGVEGVVPFKELSVKPGEDVTKQIKVGDVFDLVVISKI-GSDKEGGSYLLSQRRLEARKV 104

Query: 530 -DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVI 584
            D++ K    G  +S  V  V    +VV    +G+    IP   + DH +E     K   
Sbjct: 105 WDEIEKKYEAGETISAPVTQVVKGGLVVDAGVRGF----IPASMIEDHYVEDLNQFK--- 157

Query: 585 KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL--PSDASHIHPNSVVHGYVCNIIETG 642
             G   +  ++    S N L+ +   ++ + ++       + +    VV G V  +   G
Sbjct: 158 --GQTLELKIIEIEPSENRLILSHKEIVKAEREAKKAETLAKLAAGDVVEGKVARLTNFG 215

Query: 643 CFVRFLGRLTGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701
            FV  LG + G    S+ +  +R D  S    VGQ V+  +L V+ +  R++LS+KQ+  
Sbjct: 216 AFVD-LGGVDGLVHVSE-IAFERVDKPSDVLKVGQEVKVKVLSVDPDKERVSLSIKQTLP 273

Query: 702 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 761
              D         + EKIA                    G VIEG V     FG  V  E
Sbjct: 274 QPWDQ--------VSEKIAE-------------------GDVIEGTVKRLTSFGAFV--E 304

Query: 762 EHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 807
               V G      I+H  +A     + SG  I+  +L V   +  + LS+K +
Sbjct: 305 VLPGVEGLVHISQISHKHIATPNEVLTSGEKIKVKVLSVHPEQHRLGLSIKAL 357



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 18/180 (10%)

Query: 387 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILS 444
           GV+   P   M E   V+   +FK G  L  +++ ++    R+ ++HK+ +   + A   
Sbjct: 135 GVRGFIP-ASMIEDHYVEDLNQFK-GQTLELKIIEIEPSENRLILSHKEIVKAEREA--- 189

Query: 445 SYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
             AE   +L    +  G + ++   G FV    GV G    SE+  +   +PS +  VGQ
Sbjct: 190 KKAETLAKLAAGDVVEGKVARLTNFGAFVDL-GGVDGLVHVSEIAFERVDKPSDVLKVGQ 248

Query: 501 VVKCRIMSSIPASRRINLSF---MMKP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI 556
            VK +++S  P   R++LS    + +P  +VSE   +  G ++ G V  +T     V V+
Sbjct: 249 EVKVKVLSVDPDKERVSLSIKQTLPQPWDQVSEK--IAEGDVIEGTVKRLTSFGAFVEVL 306


>gi|386394604|ref|ZP_10079385.1| ribosomal protein S1 [Desulfovibrio sp. U5L]
 gi|385735482|gb|EIG55680.1| ribosomal protein S1 [Desulfovibrio sp. U5L]
          Length = 576

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 150/348 (43%), Gaps = 34/348 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G  V G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQTVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ 266

Query: 425 --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +++++  K+ +      I   Y E T RL   G +T +  +G FV    GV+G    S
Sbjct: 267 DKQKVSLGMKQLVADPWENIAGKYPEGT-RL--SGKVTNLVDYGAFVELEAGVEGLVHIS 323

Query: 483 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 537
           E+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V      G+
Sbjct: 324 EMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--MKQVRPNPWDIVAEKYPEGT 381

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 591
           ++ G V  +T   + +     G   G     H++D     +  K V  PG  F       
Sbjct: 382 VLEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKSGDTVM 432

Query: 592 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 649
            ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGAMVKGTVTNITDFGLFVEVEE 488

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 489 GIEGLVHVSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 8/162 (4%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1305
            +++G VKN+T  G FI +   +D  + +S++S    V  P + F  G  V  +VL+V+  
Sbjct: 382  VLEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDTVMAKVLTVDKE 441

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
            +++  + +K       S+     + + + VG +V G +  +  +GLF+ +E   + GL H
Sbjct: 442  NEKFTLGIKQ-----LSEDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEE-GIEGLVH 495

Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            VSE+S   V     +Y+ G++++ K++ V  ++RR+ L +KS
Sbjct: 496  VSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIKS 537



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L     V G VKN+T  G F+ L   LD  + ++++S   ++ P++   +G  +  +VLS
Sbjct: 205  LEEGQTVTGRVKNITEYGVFVDLG-GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
             +   ++V + +K    +  +    N       G  + G++  +  YG F+ +E   + G
Sbjct: 264  FDQDKQKVSLGMK----QLVADPWENIAGKYPEGTRLSGKVTNLVDYGAFVELE-AGVEG 318

Query: 1362 LCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            L H+SE+S    + +   +   G++V+V +L VD +K+RISLGMK
Sbjct: 319  LVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMK 363



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 6/123 (4%)

Query: 1285 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQI 1342
            P+ +  +G+    RVL +      V V+ +    + R + + ++  L  L  G  V G++
Sbjct: 158  PDMDALVGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL--LKTLEEGQTVTGRV 215

Query: 1343 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
            K +  YG+F+ +    L GL H++++S   + + + +   G+++++K+L  D++K+++SL
Sbjct: 216  KNITEYGVFVDL--GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSL 273

Query: 1403 GMK 1405
            GMK
Sbjct: 274  GMK 276



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 152/391 (38%), Gaps = 83/391 (21%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--- 507
           D +IT   + +I+  G +     GV+ F P S + L P  +  ++  VGQ  + R++   
Sbjct: 121 DDVITGRIVRRIK--GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKIN 176

Query: 508 ---SSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV-------- 553
              S++  SRR+ L       R    DL+K    G  V+G V  +T   V V        
Sbjct: 177 RRRSNVIVSRRVLLEERRDSMR---KDLLKTLEEGQTVTGRVKNITEYGVFVDLGGLDGL 233

Query: 554 -YVIAKGYSKGTIPTE--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 610
            ++    + +   P E  HL D LE                ++L  D +   + L  K  
Sbjct: 234 MHITDMSWKRIKHPKELVHLGDELEL---------------KVLSFDQDKQKVSLGMKQL 278

Query: 611 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLS 669
           + +  + +   A      + + G V N+++ G FV     + G    S+    ++    S
Sbjct: 279 VADPWENI---AGKYPEGTRLSGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPS 335

Query: 670 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 729
           +  +VG  V   +L V+ +  RI+L +KQ   +  D        ++ EK           
Sbjct: 336 QMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWD--------IVAEK----------- 376

Query: 730 SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVE 781
                   +  G+V+EG V    +FG+ +  E+  D  G I    ++        G   +
Sbjct: 377 --------YPEGTVLEGSVKNITEFGIFIGIEDGID--GLIHVSDISWTKKVRHPGEMFK 426

Query: 782 SGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
           SG  + A +L V K      L +K +  D +
Sbjct: 427 SGDTVMAKVLTVDKENEKFTLGIKQLSEDPW 457



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 166/384 (43%), Gaps = 35/384 (9%)

Query: 55  VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG  +T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQTVTGRVKNITEYG 222

Query: 114 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV 169
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLG-----M 275

Query: 170 SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 229
            + V    + I+      G  +S +V ++++ G  +       G V I  +  T    + 
Sbjct: 276 KQLVADPWENIA-GKYPEGTRLSGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHP 334

Query: 230 KNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIYDQSKVV 283
               +   +V   +L VDP  + + L +     NP+ ++  + P   V  G + + ++  
Sbjct: 335 SQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTVLEGSVKNITE-- 392

Query: 284 RVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEG 341
                 G+ + I          + +SD++  ++VR   + +K G  V  ++L   +  E 
Sbjct: 393 -----FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKSGDTVMAKVLTVDKENEK 444

Query: 342 LATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
              GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +  +S  
Sbjct: 445 FTLGIKQLS--EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRK 502

Query: 401 EIVKPGKKFKVGAELVFRVLGVKS 424
           ++  P + +K G E+  +V+ V +
Sbjct: 503 KVKTPAELYKEGDEIEAKVIHVSA 526



 Score = 47.4 bits (111), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 86/451 (19%), Positives = 175/451 (38%), Gaps = 80/451 (17%)

Query: 554 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 613
           Y +  G  +  +P  H+   L     M +++   +EF ++L ++   SN+++S +  L  
Sbjct: 136 YTVDLGGVEAFLPGSHV--DLRPVPDMDALVGQEFEF-RVLKINRRRSNVIVSRRVLLEE 192

Query: 614 SAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 672
               +  D    +     V G V NI E G FV  LG L G    +     +     +  
Sbjct: 193 RRDSMRKDLLKTLEEGQTVTGRVKNITEYGVFVD-LGGLDGLMHITDMSWKRIKHPKELV 251

Query: 673 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 732
           ++G  +   +L  + +  +++L +KQ                  E IA            
Sbjct: 252 HLGDELELKVLSFDQDKQKVSLGMKQLVADPW------------ENIAG----------- 288

Query: 733 KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGS 784
           K+ EG    + + GKV    D+G  V  E  + V G +   +++           V  G 
Sbjct: 289 KYPEG----TRLSGKVTNLVDYGAFVELE--AGVEGLVHISEMSWTRKLRHPSQMVHVGD 342

Query: 785 VIQAAILDVAKAERLVDLSLKTV-------FIDRFREANSNRQAQKKKRKREASKDLGVH 837
            ++  +L V   ++ + L +K V         +++ E      + K     E    +G+ 
Sbjct: 343 EVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTVLEGSVKNIT--EFGIFIGIE 400

Query: 838 QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSS 897
             ++ ++ +                   + +S     + P + F +G +V+A V+ +   
Sbjct: 401 DGIDGLIHV-------------------SDISWTKKVRHPGEMFKSGDTVMAKVLTVDKE 441

Query: 898 STAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 957
           +   +  L +K +SE   +     +   +Y VG++V+  +T I    L ++   G  G +
Sbjct: 442 NE--KFTLGIKQLSEDPWT-----RVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLV 494

Query: 958 HITEVNDDKSNVVENLFSNFKIGQTVTARII 988
           H++E++  K      L   +K G  + A++I
Sbjct: 495 HVSEISRKKVKTPAEL---YKEGDEIEAKVI 522


>gi|383753845|ref|YP_005432748.1| putative 30S ribosomal protein S1 [Selenomonas ruminantium subsp.
            lactilytica TAM6421]
 gi|381365897|dbj|BAL82725.1| putative 30S ribosomal protein S1 [Selenomonas ruminantium subsp.
            lactilytica TAM6421]
          Length = 354

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 38/290 (13%)

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
            +M+  +  G+ V   I++++ G  GLV  +   L G +  ++++   V D          
Sbjct: 102  DMEAIMERGETVQATINQVVKG--GLVASVN-GLRGFIPASQMELHFVKD---------- 148

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
              LS Y  GQ V+C+++EI    +    + LS R  L+ + +              K  E
Sbjct: 149  --LSVY-AGQTVECEIIEIDVHKQ---RLVLSRRKLLEAVRAE-------------KEDE 189

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
                L P+ IV+G VK +   G FI +   +D    +S+L+   V+ P     +G+ +  
Sbjct: 190  VFSTLQPDTIVRGTVKRIVDYGAFIDIG-GVDGLAHISDLAWNRVKHPSDVLEVGQELDV 248

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
             V S++  +KR+ +++K     T     ++N      GDI+ G+I ++  +G F+ IE  
Sbjct: 249  YVKSIDQEAKRISLSVKD----TMRDPWLDNAEKYAEGDIIEGKIIKLTDFGAFMEIE-P 303

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
               GL  + EL+E  ++  +     G++VKVK+L++D +++RISL +  +
Sbjct: 304  GFDGLIPMGELAEKRIERADEAVHVGDEVKVKVLRIDTKRKRISLSITKA 353



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S ++P  +V+G V  +  +GA +   GGV  L  +  ++   +  P    +VG EL   V
Sbjct: 192 STLQPDTIVRGTVKRIVDYGAFIDI-GGVDGLAHISDLAWNRVKHPSDVLEVGQELDVYV 250

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
             +  ++KRI+++ K T+    L     YAE     I  G I K+   G F+    G  G
Sbjct: 251 KSIDQEAKRISLSVKDTMRDPWLDNAEKYAEGD---IIEGKIIKLTDFGAFMEIEPGFDG 307

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             P  EL            HVG  VK +++      +RI+LS 
Sbjct: 308 LIPMGELAEKRIERADEAVHVGDEVKVKVLRIDTKRKRISLSI 350



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
            G+ V   ++ ++   +R+ ++ +       ++ E    S L    IV G +KR+  YG F
Sbjct: 154  GQTVECEIIEIDVHKQRLVLSRRKLLEAVRAEKEDEVFSTLQPDTIVRGTVKRIVDYGAF 213

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1411
            I I   +  GL H+S+L+ + V +   +   G+++ V +  +D+E +RISL +K +    
Sbjct: 214  IDIGGVD--GLAHISDLAWNRVKHPSDVLEVGQELDVYVKSIDQEAKRISLSVKDTMRDP 271

Query: 1412 DADNLQMSSE 1421
              DN +  +E
Sbjct: 272  WLDNAEKYAE 281



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 109/242 (45%), Gaps = 19/242 (7%)

Query: 466 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMK 523
           G  V   NG++GF P S++ L    +  S+Y  GQ V+C I+      +R+ LS   +++
Sbjct: 123 GGLVASVNGLRGFIPASQMELH-FVKDLSVY-AGQTVECEIIEIDVHKQRLVLSRRKLLE 180

Query: 524 PTRVSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 578
             R  ++D V    +  ++V G V  +      + +   G   G      LA + ++H +
Sbjct: 181 AVRAEKEDEVFSTLQPDTIVRGTVKRIVDYGAFIDI---GGVDGLAHISDLAWNRVKHPS 237

Query: 579 VMKSVIKPGYEFDQLL-VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 637
               V++ G E D  +  +D E+  + LS K ++ +       +A       ++ G +  
Sbjct: 238 ---DVLEVGQELDVYVKSIDQEAKRISLSVKDTMRDP---WLDNAEKYAEGDIIEGKIIK 291

Query: 638 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
           + + G F+       G  P  +  + +     +  +VG  V+  +L ++++  RI+LS+ 
Sbjct: 292 LTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHVGDEVKVKVLRIDTKRKRISLSIT 351

Query: 698 QS 699
           ++
Sbjct: 352 KA 353


>gi|167766699|ref|ZP_02438752.1| hypothetical protein CLOSS21_01205 [Clostridium sp. SS2/1]
 gi|167711636|gb|EDS22215.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
            SS2/1]
 gi|291558359|emb|CBL37159.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
            DMAPP forming) [butyrate-producing bacterium SSC/2]
          Length = 632

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 96/173 (55%), Gaps = 8/173 (4%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  E  E +   M V+G VKNVT  G FI L    D  + +S +S G VE+P+K F IG 
Sbjct: 458  KQKELFEKIEAGMKVEGVVKNVTDFGAFIDLG-GADGLLHISEMSWGRVENPKKVFNIGD 516

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             V   VL  +   +++ ++LK  +     ++E        VG +V G++ R+  +G F+ 
Sbjct: 517  KVT--VLIKDIQGEKIALSLKFPEENPWLKAE----EKYKVGSVVTGKVARMTDFGAFVE 570

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            +E + +  L HVS+++++H+D    +   G++++ K++   K+ ++ISL MK+
Sbjct: 571  LE-SGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSMKA 622



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 16/240 (6%)

Query: 285 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE 340
           +D GL +L  I    V  PA + +SD  E +++K E     G  +   I  F    R + 
Sbjct: 393 LDGGLSVL--IEEARVFIPASL-VSDSYERDLKKYE-----GQEIEFVISEFNPRKRRVI 444

Query: 341 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
           G    +L A+  E        ++ GM V+G V  V  FGA +   GG   L  +  MS  
Sbjct: 445 GDRKQLLVAAKKEKQKELFEKIEAGMKVEGVVKNVTDFGAFIDL-GGADGLLHISEMSWG 503

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
            +  P K F +G ++   +  ++ ++I ++ K       L     Y   +   +  G + 
Sbjct: 504 RVENPKKVFNIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAEEKYKVGS---VVTGKVA 560

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++   G FV   +G+      S++  +   +PS +  VGQ ++ +++      ++I+LS 
Sbjct: 561 RMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSM 620



 Score = 43.9 bits (102), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 35/182 (19%)

Query: 631 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
           V G V N+ + G F+  LG   G    S+   G+  +  K + +G  V   I D+  E  
Sbjct: 472 VEGVVKNVTDFGAFID-LGGADGLLHISEMSWGRVENPKKVFNIGDKVTVLIKDIQGE-- 528

Query: 691 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 750
           +I LSLK          F +E+                   LK  E + +GSV+ GKV  
Sbjct: 529 KIALSLK----------FPEEN-----------------PWLKAEEKYKVGSVVTGKVAR 561

Query: 751 SNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             DFG  V  E   D    ++     H       +  G  I+A ++D  K ++ + LS+K
Sbjct: 562 MTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSMK 621

Query: 806 TV 807
            +
Sbjct: 622 AL 623


>gi|94987197|ref|YP_595130.1| 30S ribosomal protein S1 [Lawsonia intracellularis PHE/MN1-00]
 gi|442556035|ref|YP_007365860.1| 30S ribosomal protein S1 [Lawsonia intracellularis N343]
 gi|94731446|emb|CAJ54809.1| ribosomal protein S1 [Lawsonia intracellularis PHE/MN1-00]
 gi|441493482|gb|AGC50176.1| 30S ribosomal protein S1 [Lawsonia intracellularis N343]
          Length = 574

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 6/160 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1305
            I++G VKN+T  G FI +   +D  + +S++S    V  P + F +G  V  +VL+V+  
Sbjct: 381  ILEGVVKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNELFKVGDTVQAKVLTVDQE 440

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
            +++  + +K       S    N  S   VG IV G I  +  +GLF+ +E   + GL HV
Sbjct: 441  NEKFTLGIKQLTEDPWS----NAPSVYPVGGIVKGIITNITDFGLFVEVEE-GIEGLVHV 495

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            SELS   + +   IY+ GE+++ KI+ V  E+RR+ L +K
Sbjct: 496  SELSSKKIKSPSEIYKDGEEIQAKIIHVSAEERRLGLSIK 535



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 11/175 (6%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  + ++ +S   +V G VKNVT  G F+ L   LD  + ++++S   +  P +   +G+
Sbjct: 196  KRQDLLQTISEGQVVVGKVKNVTEYGVFVDLG-GLDGLLHITDMSWKRIRHPREMVNLGQ 254

Query: 1294 LVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
             +  +VLS +  +++V + LK    D            S+ HVG     ++  +  YG+F
Sbjct: 255  ELELKVLSFDKENQKVSLGLKQLVPDPWQDITERFPETSH-HVG-----KVTNLVDYGVF 308

Query: 1352 ITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + +E + + GL H+SE+S    + +   +   G++V+V IL +D++K+RISLGMK
Sbjct: 309  VELE-SGVEGLVHISEMSWTRKLRHPSQMVHQGDEVEVVILGIDQDKKRISLGMK 362



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 146/352 (41%), Gaps = 43/352 (12%)

Query: 188 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA------ 241
           G +V  +V+++ E GV +       G   + H+ +     +WK   +  + VN       
Sbjct: 207 GQVVVGKVKNVTEYGVFVDL----GGLDGLLHITDM----SWKRIRHPREMVNLGQELEL 258

Query: 242 RILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 295
           ++L  D  ++ V L L     +P+  +  R P +   VG + +      VD G+ + L+ 
Sbjct: 259 KVLSFDKENQKVSLGLKQLVPDPWQDITERFPETSHHVGKVTN-----LVDYGVFVELE- 312

Query: 296 PSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGFRHLE---GLATGILKASA 351
                     V IS+++   ++R   +   +G  V V ILG    +    L    +K + 
Sbjct: 313 ----SGVEGLVHISEMSWTRKLRHPSQMVHQGDEVEVVILGIDQDKKRISLGMKQVKPNP 368

Query: 352 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFK 410
           +E           G +++G V  +  FG  +    G+  L  +  +S  + V+ P + FK
Sbjct: 369 WE---LVGEKYPEGTILEGVVKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNELFK 425

Query: 411 VGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 468
           VG  +  +VL V  ++++ T+  K+          S Y       I  G IT I   G F
Sbjct: 426 VGDTVQAKVLTVDQENEKFTLGIKQLTEDPWSNAPSVYPVGG---IVKGIITNITDFGLF 482

Query: 469 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           V    G++G    SEL       PS +Y  G+ ++ +I+      RR+ LS 
Sbjct: 483 VEVEEGIEGLVHVSELSSKKIKSPSEIYKDGEEIQAKIIHVSAEERRLGLSI 534



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 93/173 (53%), Gaps = 10/173 (5%)

Query: 1236 LEKIEDLS-PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
             +++EDL   N I++G +     KG + +  R ++A +  S++    V  P+ +  + + 
Sbjct: 110  FDQLEDLQEKNGIIKGRIVRRI-KGGYTIDLRGVEAFLPGSHVDLRPV--PDMDMLVNQE 166

Query: 1295 VAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
               RVL +      V V+ +    + R + + ++  L  +  G +V+G++K V  YG+F+
Sbjct: 167  YEFRVLKINRRRSNVIVSRRVLLEEERDSKRQDL--LQTISEGQVVVGKVKNVTEYGVFV 224

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
             +    L GL H++++S   + +   +   G+++++K+L  DKE +++SLG+K
Sbjct: 225  DL--GGLDGLLHITDMSWKRIRHPREMVNLGQELELKVLSFDKENQKVSLGLK 275


>gi|429761209|ref|ZP_19293640.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes
            hadrus DSM 3319]
 gi|429184350|gb|EKY25370.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerostipes
            hadrus DSM 3319]
          Length = 632

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 96/173 (55%), Gaps = 8/173 (4%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  E  E +   M V+G VKNVT  G FI L    D  + +S +S G VE+P+K F IG 
Sbjct: 458  KQKELFEKIEAGMKVEGVVKNVTDFGAFIDLG-GADGLLHISEMSWGRVENPKKVFNIGD 516

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             V   VL  +   +++ ++LK  +     ++E        VG +V G++ R+  +G F+ 
Sbjct: 517  KVT--VLIKDIQGEKIALSLKFPEENPWLKAE----EKYKVGSVVTGKVARMTDFGAFVE 570

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            +E + +  L HVS+++++H+D    +   G++++ K++   K+ ++ISL MK+
Sbjct: 571  LE-SGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSMKA 622



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 16/240 (6%)

Query: 285 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE 340
           +D GL +L  I    V  PA + +SD  E +++K E     G  +   I  F    R + 
Sbjct: 393 LDGGLSVL--IEEARVFIPASL-VSDSYERDLKKYE-----GQEIEFVISEFNPRKRRVI 444

Query: 341 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
           G    +L A+  E        ++ GM V+G V  V  FGA +   GG   L  +  MS  
Sbjct: 445 GDRKQLLVAAKKEKQKELFEKIEAGMKVEGVVKNVTDFGAFIDL-GGADGLLHISEMSWG 503

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
            +  P K F +G ++   +  ++ ++I ++ K       L     Y   +   +  G + 
Sbjct: 504 RVENPKKVFNIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAEEKYKVGS---VVTGKVA 560

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++   G FV   +G+      S++  +   +PS +  VGQ ++ +++      ++I+LS 
Sbjct: 561 RMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSM 620



 Score = 43.9 bits (102), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 35/182 (19%)

Query: 631 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
           V G V N+ + G F+  LG   G    S+   G+  +  K + +G  V   I D+  E  
Sbjct: 472 VEGVVKNVTDFGAFID-LGGADGLLHISEMSWGRVENPKKVFNIGDKVTVLIKDIQGE-- 528

Query: 691 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 750
           +I LSLK          F +E+                   LK  E + +GSV+ GKV  
Sbjct: 529 KIALSLK----------FPEEN-----------------PWLKAEEKYKVGSVVTGKVAR 561

Query: 751 SNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             DFG  V  E   D    ++     H       +  G  I+A ++D  K ++ + LS+K
Sbjct: 562 MTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSMK 621

Query: 806 TV 807
            +
Sbjct: 622 AL 623


>gi|390939813|ref|YP_006403550.1| 30S ribosomal protein S1 [Sulfurospirillum barnesii SES-3]
 gi|390192920|gb|AFL67975.1| ribosomal protein S1 [Sulfurospirillum barnesii SES-3]
          Length = 558

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 103/478 (21%), Positives = 212/478 (44%), Gaps = 72/478 (15%)

Query: 931  SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA- 989
            +L+   +  IK   + +  G    GR++ +EV D+  N+        K+G  +   I   
Sbjct: 37   ALINGVVVAIKEDVILVDVGKKSEGRLNASEVTDENGNIT------CKVGDVIPVVITGF 90

Query: 990  KSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1048
            ++ +P +  K  L +  IK  +   +E        E DV+   ++TG      N+   + 
Sbjct: 91   RNERPAVSHKKALRKDRIKAFIAEYNE--------EEDVAFDVKITGK-----NKGGFIA 137

Query: 1049 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS 1108
             ++    + F+  S     ++        +GK +   ++ I++  + + +  + + D   
Sbjct: 138  ENKD-GIEFFLPRSQAAVKDMNSL-----MGKTLKVKIIKIDEATESIIISRKKYLDDDR 191

Query: 1109 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1168
             K  +I    +Q  I   ++V G I KI +   G+ V +G  + G VH++E+        
Sbjct: 192  KKRKEI----VQELIDRDEVVDGTIKKITTY--GMFVDVGG-IDGLVHYSEI-------- 236

Query: 1169 LSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1228
               Y +G  +P + Y EG+ +  K ++  +  R   H+ LS+++++              
Sbjct: 237  --SY-KGPVNPGTLYKEGEVIPVKAIKYDKDKR---HLSLSIKAAM-------------- 276

Query: 1229 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEK 1287
               P    E  ++L     +Q  + N+   G F+ L   ++  + +S +S D  ++ P  
Sbjct: 277  ---PDPWDEIKDELETGDSIQVTISNIEPYGAFVDLGNDIEGFLHISEISWDKNIKHPRD 333

Query: 1288 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1347
                G++V   V+ ++   +R+ V+LK   ++   +          VGDIV G+I  + +
Sbjct: 334  YIEEGQVVDVEVIEIDAKERRLRVSLKNVLAKPFDEFR----KKFKVGDIVKGEITTITA 389

Query: 1348 YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            +G F+ I    + GL H  + S D  +  + ++  G++V+VKI+K+D+E  ++SL  K
Sbjct: 390  FGAFVKI--GGIEGLLHNEDASWDRNNKCKELFAVGDEVEVKIVKIDEEAEKVSLSKK 445



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 109/518 (21%), Positives = 196/518 (37%), Gaps = 84/518 (16%)

Query: 324 KEGSCVRVRILGFR-------HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 376
           K G  + V I GFR       H + L    +KA  F        DV   + + GK    +
Sbjct: 78  KVGDVIPVVITGFRNERPAVSHKKALRKDRIKA--FIAEYNEEEDVAFDVKITGK----N 131

Query: 377 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKT 434
             G I +   G++   P    +    VK      +G  L  +++ +   ++ I ++ KK 
Sbjct: 132 KGGFIAENKDGIEFFLPRSQAA----VKDMNSL-MGKTLKVKIIKIDEATESIIISRKKY 186

Query: 435 LVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 493
           L   +        E  DR  +  G I KI  +G FV    G+ G    SE+       P 
Sbjct: 187 LDDDRKKRKEIVQELIDRDEVVDGTIKKITTYGMFVDV-GGIDGLVHYSEISYKGPVNPG 245

Query: 494 SMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNA 550
           ++Y  G+V+  + +      R ++LS    M  P    +D+L + G  +   +  + P  
Sbjct: 246 TLYKEGEVIPVKAIKYDKDKRHLSLSIKAAMPDPWDEIKDEL-ETGDSIQVTISNIEPYG 304

Query: 551 VVV----------YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 600
             V          ++    + K     +H  D++E   V+           +++ +D + 
Sbjct: 305 AFVDLGNDIEGFLHISEISWDKNI---KHPRDYIEEGQVVDV---------EVIEIDAKE 352

Query: 601 SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 660
             L +S K  L   A+             +V G +  I   G FV+ +G + G      A
Sbjct: 353 RRLRVSLKNVL---AKPFDEFRKKFKVGDIVKGEITTITAFGAFVK-IGGIEGLLHNEDA 408

Query: 661 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 720
              +     + + VG  V   I+ ++ E  +++LS K+                LE+   
Sbjct: 409 SWDRNNKCKELFAVGDEVEVKIVKIDEEAEKVSLSKKE----------------LEDSPI 452

Query: 721 MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH---QLAG 777
              +  H             G ++ GK+ +  +FG+ V  EE+ D    I      Q+  
Sbjct: 453 QKYAKTHEN-----------GDIVHGKIRDIKEFGIFVELEENVD--ALIRKEDLGQVNE 499

Query: 778 ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 815
           A ++ G  I+AAI  +   +  + LS++ +   + REA
Sbjct: 500 ADLKIGDEIEAAITFIDDKKNRIRLSVRRLSKLKEREA 537



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 68/119 (57%), Gaps = 6/119 (5%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1348
            +GK +  +++ ++  ++ + ++ K    D R   +  +  L  +   ++V G IK++ +Y
Sbjct: 161  MGKTLKVKIIKIDEATESIIISRKKYLDDDRKKRKEIVQEL--IDRDEVVDGTIKKITTY 218

Query: 1349 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            G+F+ +   +  GL H SE+S     N  T+Y+ GE + VK +K DK+KR +SL +K++
Sbjct: 219  GMFVDVGGID--GLVHYSEISYKGPVNPGTLYKEGEVIPVKAIKYDKDKRHLSLSIKAA 275



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 48/292 (16%)

Query: 1117 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1176
            D ++  +  GD +   IS I     G  V +G  + G +H +E+           +D+  
Sbjct: 281  DEIKDELETGDSIQVTISNIEPY--GAFVDLGNDIEGFLHISEI----------SWDKNI 328

Query: 1177 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1236
              P    +EGQ V  +V+EI    R        LR SL  +       L+   D   K  
Sbjct: 329  KHPRDYIEEGQVVDVEVIEIDAKER-------RLRVSLKNV-------LAKPFDEFRKKF 374

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE-KE-FPIGKL 1294
             K+ D     IV+G +  +T+ G F+ +      + LL N    +  + + KE F +G  
Sbjct: 375  -KVGD-----IVKGEITTITAFGAFVKIG---GIEGLLHNEDASWDRNNKCKELFAVGDE 425

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFIT 1353
            V  +++ ++  +++V ++      +    S I   +  H  GDIV G+I+ ++ +G+F+ 
Sbjct: 426  VEVKIVKIDEEAEKVSLS-----KKELEDSPIQKYAKTHENGDIVHGKIRDIKEFGIFVE 480

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            +E  N+  L    +L + +    E   + G++++  I  +D +K RI L ++
Sbjct: 481  LEE-NVDALIRKEDLGQVN----EADLKIGDEIEAAITFIDDKKNRIRLSVR 527


>gi|315636540|ref|ZP_07891776.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
 gi|384156568|ref|YP_005539383.1| 30S ribosomal protein S1 [Arcobacter butzleri ED-1]
 gi|315479189|gb|EFU69886.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
 gi|345470122|dbj|BAK71573.1| 30S ribosomal protein S1 [Arcobacter butzleri ED-1]
          Length = 550

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 173/363 (47%), Gaps = 51/363 (14%)

Query: 1049 ISRHLKAQLFILDSA----YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1104
            +S   K    I D+A    + P      + +  IGK V   V+ +NK +  + +V R   
Sbjct: 120  VSVKQKGGFVIEDAAGCEYFMPMAQSYLKTQGAIGKTVKAKVIKVNKAQNSI-IVSRK-- 176

Query: 1105 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1164
              + +++ +I ++ +   + + + + G I KI S   G+ V +G  + G V++ E+    
Sbjct: 177  -KLIEESKNIKDNKVAEILEKKEAINGTIKKITSY--GMFVDLGG-IDGLVNYNEI---- 228

Query: 1165 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1224
                   Y +G  +P + Y+EG  V   VL   +  +   H+ LS++++L          
Sbjct: 229  ------SY-KGPVNPANYYNEGDEVSVVVLAYDKAKQ---HLSLSIKAALS--------- 269

Query: 1225 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVE 1283
                   P K ++   ++   + V   V N  S G F+ L   ++  + +S +S +  ++
Sbjct: 270  ------NPWKEIKDQLEVGDTITVT--VSNFESYGAFVDLGNDIEGLLHISEISWNKNLK 321

Query: 1284 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQI 1342
            +P++   IG  +   V+ +    KR+ V+LK    +  ++       N H VGD++ G+I
Sbjct: 322  NPKELLTIGDEINVEVIELNVEQKRLRVSLKNLQEKPFTK-----FVNEHKVGDVIKGKI 376

Query: 1343 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
              +  +G F+ I + +  GL H  E S +     +T+++ G++V+V+I+K+DKEK  ISL
Sbjct: 377  ATLTDFGAFVNIGDVD--GLLHNEEASWESNAKCKTLFKKGDEVEVRIIKIDKEKENISL 434

Query: 1403 GMK 1405
             +K
Sbjct: 435  SIK 437



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 109/514 (21%), Positives = 216/514 (42%), Gaps = 73/514 (14%)

Query: 322 KYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 379
           KY  G  + V ++G +      +   +L+   F+  V TH +    + ++GK+++V   G
Sbjct: 67  KYNVGDVIPVMLMGNKGERPNISHKKVLQKEKFDNFVKTHGEDFEDVTIEGKIVSVKQKG 126

Query: 380 A-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV 436
             +++   G +   P   M++  +   G    +G  +  +V+ V   +  I V+ KK + 
Sbjct: 127 GFVIEDAAGCEYFMP---MAQSYLKTQG---AIGKTVKAKVIKVNKAQNSIIVSRKKLIE 180

Query: 437 KSKLAILSSYAEATDRL-ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 495
           +SK    +  AE  ++    +G I KI  +G FV    G+ G    +E+       P++ 
Sbjct: 181 ESKNIKDNKVAEILEKKEAINGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNPANY 239

Query: 496 YHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 552
           Y+ G  V   +++   A + ++LS    +  P +  +D L ++G  ++  V V    +  
Sbjct: 240 YNEGDEVSVVVLAYDKAKQHLSLSIKAALSNPWKEIKDQL-EVGDTIT--VTVSNFESYG 296

Query: 553 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSNLLL 605
            +V      +G +       H+   +  K++  P      G E + +++ L+ E   L +
Sbjct: 297 AFVDLGNDIEGLL-------HISEISWNKNLKNPKELLTIGDEINVEVIELNVEQKRLRV 349

Query: 606 SAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 663
           S K     + Q+ P +   + H    V+ G +  + + G FV  +G + G     +A   
Sbjct: 350 SLK-----NLQEKPFTKFVNEHKVGDVIKGKIATLTDFGAFVN-IGDVDGLLHNEEASWE 403

Query: 664 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 723
             A     +  G  V   I+ ++ E   I+LS+K    S + A   Q+ + L        
Sbjct: 404 SNAKCKTLFKKGDEVEVRIIKIDKEKENISLSIKD--ISDSPAKRFQDAYKL-------- 453

Query: 724 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ---LAGATV 780
                            G +++G V +  DFG+ +  E + D  G I +     L    V
Sbjct: 454 -----------------GDIVKGPVKDIKDFGIFIKLENNLD--GLIRNEDFGPLKADEV 494

Query: 781 ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
           ++G  I+A I+++   +  V LS++ +   + RE
Sbjct: 495 KNGDEIEAVIINIDTKKNRVRLSVRRLEQQQERE 528


>gi|227889870|ref|ZP_04007675.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200]
 gi|227849734|gb|EEJ59820.1| 30S ribosomal protein S1 [Lactobacillus johnsonii ATCC 33200]
          Length = 400

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 10/175 (5%)

Query: 1237 EKIEDLSPNMIV----QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            E  E+++  ++V    +G V  +T  G F+ +   +D  V +S +S  +++ P      G
Sbjct: 186  EAFENVASQLVVGDTVEGKVSRLTGFGAFVDVG-GVDGLVHISEISYKHIDKPSDVLKAG 244

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            + V  +V+ ++    R+ +++K +      ++       LH GDI+ G++K + S+G FI
Sbjct: 245  QDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA----TEGLHEGDIIEGEVKTLTSFGAFI 300

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             + +  + GL HVSE++  HVD    + + G+ VKVK+L VD   RRISL +K +
Sbjct: 301  EVAD-GIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDPSDRRISLSIKQA 354



 Score = 77.0 bits (188), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 17/179 (9%)

Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 407
           +  AFE +    S +  G  V+GKV  +  FGA V   GGV  L  +  +S   I KP  
Sbjct: 184 REEAFENVA---SQLVVGDTVEGKVSRLTGFGAFVDV-GGVDGLVHISEISYKHIDKPSD 239

Query: 408 KFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITK 461
             K G ++  +V+G+   R  I+++ K+TL        S + EAT+ L    I  G +  
Sbjct: 240 VLKAGQDVKVKVIGIDDDRHRISLSIKQTLP-------SPFEEATEGLHEGDIIEGEVKT 292

Query: 462 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           +   G F+   +G+QG    SE+      +PS +  VGQ VK +++   P+ RRI+LS 
Sbjct: 293 LTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDPSDRRISLSI 351



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 10/175 (5%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            K LEK+        V+G V      G  + + +R      L+SN    YV S  K + IG
Sbjct: 103  KELEKV--FEEGKTVEGTVTGAVRGGLLVDVGTRGFLPASLISNR---YV-SDLKPY-IG 155

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
            K +  ++  ++P   R+ ++ K    +   ++  N  S L VGD V G++ R+  +G F+
Sbjct: 156  KKMNLKITEIDPNKNRLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFV 215

Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             +   +  GL H+SE+S  H+D    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 216  DVGGVD--GLVHISEISYKHIDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQT 268



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 52/235 (22%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD V G++S+ L+G G  V   G  + G VH +E+    +  P         D L     
Sbjct: 198  GDTVEGKVSR-LTGFGAFVDVGG--VDGLVHISEISYKHIDKP--------SDVLKA--- 243

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++ +L                 P    E  E L   
Sbjct: 244  GQDVKVKVIGIDDD---RHRISLSIKQTL-----------------PSPFEEATEGLHEG 283

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             I++G VK +TS G FI ++  +   V +S +++ +V+ P     +G+ V  +VL V+P 
Sbjct: 284  DIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDPS 343

Query: 1306 SKRVEVTLKTSDSRTASQSEIN-----------------NLSNLHVGDIVIGQIK 1343
             +R+ +++K +D   A++SE N                 N +   +GDI+  Q+K
Sbjct: 344  DRRISLSIKQADP-NAAKSENNSRPRRRQDSVADKYMNDNDNGFALGDIIGDQLK 397



 Score = 43.9 bits (102), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 34/312 (10%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
           ++VKPG KF+    LV R  G   +        T +K + A         +     G +T
Sbjct: 64  QLVKPGDKFEA---LVLRRAGGDKENGEFFFSVTRLKEREAYKELEKVFEEGKTVEGTVT 120

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 514
              + G  V    G +GF P S +        S+ Y      ++G+ +  +I    P   
Sbjct: 121 GAVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKKMNLKITEIDPNKN 170

Query: 515 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568
           R+ LS   +++  R    + V     +G  V G V  +T     V V   G   G +   
Sbjct: 171 RLILSRKDLIEQEREEAFENVASQLVVGDTVEGKVSRLTGFGAFVDV---GGVDGLVHIS 227

Query: 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 627
            ++   +H      V+K G +   +++ +D++   + LS K +L +  ++       +H 
Sbjct: 228 EIS--YKHIDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTLPSPFEEA---TEGLHE 282

Query: 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 687
             ++ G V  +   G F+     + G    S+  +      S    VGQ+V+  +L V+ 
Sbjct: 283 GDIIEGEVKTLTSFGAFIEVADGIQGLVHVSEIANKHVDKPSDVLKVGQTVKVKVLGVDP 342

Query: 688 ETGRITLSLKQS 699
              RI+LS+KQ+
Sbjct: 343 SDRRISLSIKQA 354


>gi|441516244|ref|ZP_20997994.1| 30S ribosomal protein S1 [Gordonia hirsuta DSM 44140 = NBRC 16056]
 gi|441456830|dbj|GAC55955.1| 30S ribosomal protein S1 [Gordonia hirsuta DSM 44140 = NBRC 16056]
          Length = 491

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 182/414 (43%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +PSE+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++      + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKERDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          V+ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------VEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNKLGKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +    +   VK++ +D E+RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAERHVEVPDQVVSVNDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS +  VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKERDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNKLGKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-------QA 788
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE    +         
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVSVNDDAMV 346

Query: 789 AILDVAKAERLVDLSLK 805
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 147/354 (41%), Gaps = 31/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKERDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ V+ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNKLG 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            G    S+  +       +   V       ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVNDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|336054211|ref|YP_004562498.1| 30S ribosomal protein S1 [Lactobacillus kefiranofaciens ZW3]
 gi|333957588|gb|AEG40396.1| 30S ribosomal protein S1 [Lactobacillus kefiranofaciens ZW3]
          Length = 403

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +++G V  +T+ G F+ +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFVDVG-GVDGLVHISEISYKHVDKPSDVLKAGQEVKVKVIGIDNDR 258

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
             R+ +++K  +     Q+     +NL+ GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQIEPSPFEQA----TANLNEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            E+S  HVD    + + G++VKVK+L +D   +RISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQEVKVKVLNIDPSDKRISLSIKAA 354



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G V++GKV  + +FGA V   GGV  L  +  +S   + KP    K G E+  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFVDV-GGVDGLVHISEISYKHVDKPSDVLKAGQEVKVKVIGIDN 256

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 480
            R    H+ +L   ++   S + +AT  L    +  G +  +   G FV   +G+QG   
Sbjct: 257 DR----HRISLSIKQIE-PSPFEQATANLNEGDVFEGEVKSLTNFGAFVEVADGIQGLVH 311

Query: 481 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 531
            SE+      +PS +  VGQ VK ++++  P+ +RI+LS        S  D
Sbjct: 312 VSEISNKHVDKPSDVLKVGQEVKVKVLNIDPSDKRISLSIKAADPNASSSD 362



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 34/197 (17%)

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD++ G++S++ +   G  V +G  + G VH +E+    V  P         D L     
Sbjct: 198  GDVIEGKVSRLTNF--GAFVDVG-GVDGLVHISEISYKHVDKP--------SDVLKA--- 243

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK KV+ I         + LS++                    P    +   +L+  
Sbjct: 244  GQEVKVKVIGIDND---RHRISLSIKQI-----------------EPSPFEQATANLNEG 283

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
             + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P 
Sbjct: 284  DVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQEVKVKVLNIDPS 343

Query: 1306 SKRVEVTLKTSDSRTAS 1322
             KR+ +++K +D   +S
Sbjct: 344  DKRISLSIKAADPNASS 360



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 133/323 (41%), Gaps = 42/323 (13%)

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA---ILSSYAEATDRLITHG 457
           ++VKPG KFK    LV R  G   +        T +K + A   +   Y E        G
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDYEEGN---AIEG 117

Query: 458 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIP 511
            +T   + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P
Sbjct: 118 TVTSSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDP 167

Query: 512 ASRRINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 565
              R+ LS   +++  R    D V     +G ++ G V  +T     V V   G   G +
Sbjct: 168 NKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFVDV---GGVDGLV 224

Query: 566 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 624
               ++   +H      V+K G E   +++ +DN+   + LS K    +  +Q     ++
Sbjct: 225 HISEIS--YKHVDKPSDVLKAGQEVKVKVIGIDNDRHRISLSIKQIEPSPFEQA---TAN 279

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           ++   V  G V ++   G FV     + G    S+  +      S    VGQ V+  +L+
Sbjct: 280 LNEGDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQEVKVKVLN 339

Query: 685 VNSETGRITLSLKQS--CCSSTD 705
           ++    RI+LS+K +    SS+D
Sbjct: 340 IDPSDKRISLSIKAADPNASSSD 362


>gi|213965205|ref|ZP_03393402.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
 gi|213952057|gb|EEB63442.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
          Length = 487

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 170/383 (44%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD +  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDEIDAL 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++      + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEQLKENDEPVTGTVIEVVKG--GLIL 138

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG---------------QEIEAKIIELDKNRN---N 180

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLEVDLNRERVSLSLKAT-----QEDP 281

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+  H+D  + I    E
Sbjct: 282  WRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELASRHIDVPDQIVSVDE 340

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +V VK++ +D E+RRISL +K +
Sbjct: 341  QVMVKVIDIDLERRRISLSLKQA 363



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 8/183 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVT 257

Query: 417 FRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLEVDLNRERVSLSLKATQEDPWRVFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-DLV 533
           ++G    SEL       P  +  V + V  +++      RRI+LS        +E+ D  
Sbjct: 315 IEGLVHISELASRHIDVPDQIVSVDEQVMVKVIDIDLERRRISLSLKQADEDFTEEFDPT 374

Query: 534 KLG 536
           K G
Sbjct: 375 KYG 377



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 164/398 (41%), Gaps = 50/398 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEQLKE-NDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D     + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLEVDLNRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+          +   V + V   ++D++ E  RI+LSLKQ+     D  F +
Sbjct: 315 IEGLVHISELASRHIDVPDQIVSVDEQVMVKVIDIDLERRRISLSLKQA-----DEDFTE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPTKYGMGDSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|403727272|ref|ZP_10947560.1| 30S ribosomal protein S1 [Gordonia rhizosphera NBRC 16068]
 gi|403204008|dbj|GAB91891.1| 30S ribosomal protein S1 [Gordonia rhizosphera NBRC 16068]
          Length = 489

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TIASPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +  + GL H+SEL+E HV+  + +    +   VK++ +D E+RRISL +K +
Sbjct: 313  V-DEGIEGLVHISELAERHVEVPDQVVSVSDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 441 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 500
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 501 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 557
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 558 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 617 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 255

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 735
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 736 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-------QA 788
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE    +         
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELAERHVEVPDQVVSVSDDAMV 346

Query: 789 AILDVAKAERLVDLSLKTVFIDRFREANSNR 819
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 159/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   V       ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVSDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407


>gi|312869066|ref|ZP_07729240.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
 gi|417885402|ref|ZP_12529556.1| 30S ribosomal protein S1 [Lactobacillus oris F0423]
 gi|311095312|gb|EFQ53582.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
 gi|341595324|gb|EGS37973.1| 30S ribosomal protein S1 [Lactobacillus oris F0423]
          Length = 413

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 91/166 (54%), Gaps = 6/166 (3%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            +L P  +V+G V  +T+ G F+ L   +D  V +S +S  +V+ P      G+ V  +VL
Sbjct: 198  ELQPGDVVEGKVARMTNFGAFVDLG-GVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVL 256

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            SV+P  +R+ +++K +        E         G  + G +KR+ S+G F+ +    + 
Sbjct: 257  SVDPDRERISLSIKQTLPGPWDDIE----EKAPAGSTLTGTVKRLTSFGAFVEV-FPGVE 311

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            GL H+S++S  H+     + + G++V+VK+L VD E++R+ L MK+
Sbjct: 312  GLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSMKA 357



 Score = 73.2 bits (178), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 1272 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1331
            V  S ++D YVE    +F  G+ +  +++ +EP   R+ ++ K        Q+     + 
Sbjct: 141  VPASMITDHYVEDL-NQFK-GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAE 198

Query: 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1391
            L  GD+V G++ R+ ++G F+ +   +  GL HVSE+S DHVD    +  AG+ VKVK+L
Sbjct: 199  LQPGDVVEGKVARMTNFGAFVDLGGVD--GLVHVSEISYDHVDKPSDVLSAGQDVKVKVL 256

Query: 1392 KVDKEKRRISLGMKSS 1407
             VD ++ RISL +K +
Sbjct: 257  SVDPDRERISLSIKQT 272



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
           I+KA   +      ++++PG VV+GKV  + +FGA V   GGV  L  +  +S   + KP
Sbjct: 183 IVKAEHEQAAEKIFAELQPGDVVEGKVARMTNFGAFVDL-GGVDGLVHVSEISYDHVDKP 241

Query: 406 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
                 G ++  +VL V    +RI+++ K+TL       +   A A   L   G + ++ 
Sbjct: 242 SDVLSAGQDVKVKVLSVDPDRERISLSIKQTL-PGPWDDIEEKAPAGSTLT--GTVKRLT 298

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             G FV  + GV+G    S++       P+ +   GQ V+ ++++  P  +R+ LS 
Sbjct: 299 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSM 355



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 136/350 (38%), Gaps = 55/350 (15%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 529
           GV+G  P  EL   P  + +    VG  +   ++S I  + + N S+++   R+      
Sbjct: 48  GVEGVVPAKELSTKPVEDINDAVKVGDELDLVVISKI-GNDKENGSYLLSHRRLEARKVW 106

Query: 530 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
           DD+ K    G  ++  V       +VV    +G+   ++ T+H  + L            
Sbjct: 107 DDIQKKFDDGETITAKVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK-------- 158

Query: 587 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 644
           G E +  ++    S N L+ +   ++ +  +  ++   + + P  VV G V  +   G F
Sbjct: 159 GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAELQPGDVVEGKVARMTNFGAF 218

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
           V  LG + G    S+         S     GQ V+  +L V+ +  RI+LS+KQ+     
Sbjct: 219 VD-LGGVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVDPDRERISLSIKQTLPGPW 277

Query: 705 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 764
           D         +EEK                      GS + G V     FG  V  E   
Sbjct: 278 DD--------IEEKAPA-------------------GSTLTGTVKRLTSFGAFV--EVFP 308

Query: 765 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 807
            V G      I+H  +A     ++ G  +Q  +L+V    + + LS+K +
Sbjct: 309 GVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSMKAL 358



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            +  GD+V G+++++ +   G  V +G  + G VH +E+    V  P         D LS 
Sbjct: 199  LQPGDVVEGKVARMTNF--GAFVDLG-GVDGLVHVSEISYDHVDKP--------SDVLSA 247

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
               GQ VK KVL +         + LS++ +L                 PG   + IE+ 
Sbjct: 248  ---GQDVKVKVLSVDPDRE---RISLSIKQTL-----------------PGP-WDDIEEK 283

Query: 1243 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            +P    + G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+
Sbjct: 284  APAGSTLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLN 343

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEIN 1327
            V+P  +R+ +++K  + R   +   N
Sbjct: 344  VDPERQRLGLSMKALEERPKGEDSDN 369



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 147/351 (41%), Gaps = 30/351 (8%)

Query: 362 VKPGMVVKGKVIAVDS-FGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           VK G VVKG+V+A+D    AIV     GV+ + P   +S   +       KVG EL   V
Sbjct: 21  VKVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKVGDELDLVV 80

Query: 420 LGV-----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
           +       ++    ++H++   +     +    +  + +     +T+  K G  V    G
Sbjct: 81  ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDDGETITAK--VTQAVKGGLVVDA--G 136

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSED 530
           V+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS       +  + +E 
Sbjct: 137 VRGFVPASMI-TDHYVEDLNQFK-GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEK 194

Query: 531 DLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 587
              +L  G +V G V  +T     V +   G   G +    ++ DH++  +    V+  G
Sbjct: 195 IFAELQPGDVVEGKVARMTNFGAFVDL---GGVDGLVHVSEISYDHVDKPS---DVLSAG 248

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
            +   ++L +D +   + LS K +L      +   A      S + G V  +   G FV 
Sbjct: 249 QDVKVKVLSVDPDRERISLSIKQTLPGPWDDIEEKAP---AGSTLTGTVKRLTSFGAFVE 305

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
               + G    S+      A  +     GQ V+  +L+V+ E  R+ LS+K
Sbjct: 306 VFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSMK 356


>gi|239636851|ref|ZP_04677850.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
 gi|239597525|gb|EEQ80023.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
          Length = 392

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 101/192 (52%), Gaps = 22/192 (11%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE+   +G  V  +
Sbjct: 188  LDSLNAGDVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHQHVQSPEEVVFVGDKVNVK 246

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            V SVE  ++R+ +++K  D+     ++I      H  D++ G + R+ ++G F+ I    
Sbjct: 247  VKSVEKDTERISLSIK--DTLPTPFAQIK--GQFHENDVIEGTVVRLANFGAFVEIA-PG 301

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS------------ 1406
            + GL H+SE+   H+     +   G++V VKIL +D+E  R+SL +K+            
Sbjct: 302  VQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDVVESDA 361

Query: 1407 ----SYFKNDAD 1414
                SY  NDAD
Sbjct: 362  STTQSYLNNDAD 373



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 90/168 (53%), Gaps = 6/168 (3%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            E L  N +++  V  V   G  + + ++    V  S +S  ++E    +F  G+ +  +V
Sbjct: 103  EKLDNNEVIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIEDF-SDFE-GQTIKIKV 158

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
              ++P + RV ++ K  +       + + L +L+ GD++ G++ R+ ++G F+ I   + 
Sbjct: 159  EELDPENNRVILSRKAVEQAENEVKKASLLDSLNAGDVIEGKVARLTNFGAFVDIGGVD- 217

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL HVSELS  HV + E +   G+KV VK+  V+K+  RISL +K +
Sbjct: 218  -GLVHVSELSHQHVQSPEEVVFVGDKVNVKVKSVEKDTERISLSIKDT 264



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 121/261 (46%), Gaps = 26/261 (9%)

Query: 279 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 331
           ++KV  V +G GL++D+      P++ +ST      SD   + ++ K+E+   E + V  
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDFEGQTIKIKVEELDPENNRV-- 168

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
            IL  + +E     + KAS  + L         G V++GKV  + +FGA V   GGV  L
Sbjct: 169 -ILSRKAVEQAENEVKKASLLDSL-------NAGDVIEGKVARLTNFGAFVDI-GGVDGL 219

Query: 392 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 449
             +  +S   +  P +   VG ++  +V  V+  ++RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHQHVQSPEEVVFVGDKVNVKVKSVEKDTERISLSIKDTLPTPFAQIKGQFHEN 279

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
               +  G + ++   G FV    GVQG    SE+       P  +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGI 336

Query: 510 IPASRRINLSFMMKPTRVSED 530
              + R++LS  +K T  +ED
Sbjct: 337 DEENERVSLS--IKATLPNED 355



 Score = 63.2 bits (152), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 153/372 (41%), Gaps = 32/372 (8%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I KP +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAY 70

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDSGAYILSKRQLETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDV--G 128

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
            +GF P S +  D   E  S +  GQ +K ++    P + R+ LS   K    +E+++ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQTIKIKVEELDPENNRVILS--RKAVEQAENEVKK 184

Query: 535 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
                    G ++ G V  +T     V +   G   G +    L+   +H    + V+  
Sbjct: 185 ASLLDSLNAGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--QHVQSPEEVVFV 239

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
           G + + ++  ++ ++  + LS K +L     Q+       H N V+ G V  +   G FV
Sbjct: 240 GDKVNVKVKSVEKDTERISLSIKDTLPTPFAQI---KGQFHENDVIEGTVVRLANFGAFV 296

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 702
                + G    S+          +    GQ V   IL ++ E  R++LS+K +  +   
Sbjct: 297 EIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDV 356

Query: 703 -STDASFMQEHF 713
             +DAS  Q + 
Sbjct: 357 VESDASTTQSYL 368


>gi|163939412|ref|YP_001644296.1| 30S ribosomal protein S1 [Bacillus weihenstephanensis KBAB4]
 gi|229132404|ref|ZP_04261258.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
 gi|423366663|ref|ZP_17344096.1| ribosomal protein S1 [Bacillus cereus VD142]
 gi|423524601|ref|ZP_17501074.1| ribosomal protein S1 [Bacillus cereus HuA4-10]
 gi|423667281|ref|ZP_17642310.1| ribosomal protein S1 [Bacillus cereus VDM034]
 gi|163861609|gb|ABY42668.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228651110|gb|EEL07091.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
 gi|401087142|gb|EJP95351.1| ribosomal protein S1 [Bacillus cereus VD142]
 gi|401170444|gb|EJQ77685.1| ribosomal protein S1 [Bacillus cereus HuA4-10]
 gi|401304032|gb|EJS09590.1| ribosomal protein S1 [Bacillus cereus VDM034]
          Length = 382

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|404215347|ref|YP_006669542.1| Ribosomal protein S1 [Gordonia sp. KTR9]
 gi|403646146|gb|AFR49386.1| Ribosomal protein S1 [Gordonia sp. KTR9]
          Length = 492

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IG+   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  V-DEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 160/410 (39%), Gaps = 50/410 (12%)

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           + S ++ V    T      AI S+     D  I  G I K+++    +      +G  P 
Sbjct: 6   ITSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPS 65

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSL 538
            EL +    +P+ + +VG  V+  +++      R+ LS      +    + ++L +    
Sbjct: 66  RELSIKHDVDPNEVVNVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEA 125

Query: 539 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 597
           V G V  V    +++ +  +G+   ++        +E   V       G E + +++ LD
Sbjct: 126 VKGTVIEVVKGGLILDIGLRGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELD 177

Query: 598 NESSNLLLSAKYSLINSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 656
              +N++LS +  L  +  ++ S+  H +    V  G V +I+  G FV  LG + G   
Sbjct: 178 KNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVH 236

Query: 657 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 716
            S+         S+   VG  V   +LDV+ +  R++LSLK +        F + H    
Sbjct: 237 VSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH---- 291

Query: 717 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 776
                                  IG ++ GKV +   FG  V  +E   + G +   +LA
Sbjct: 292 ----------------------AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELA 327

Query: 777 GATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
              VE        G      ++D+    R + LSLK    D   E + ++
Sbjct: 328 ERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 48.1 bits (113), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407


>gi|227529193|ref|ZP_03959242.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
 gi|227350918|gb|EEJ41209.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
          Length = 410

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 6/165 (3%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L P  +V+G V  +T+ G FI L   +D  V +S +S  +V+ P      G+ V  +VL+
Sbjct: 199  LQPGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPSDVLEAGQEVKVKVLN 257

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
            V+P  +R+ +++K +        E         G ++ G +KR+ S+G F+ +    + G
Sbjct: 258  VDPERERISLSIKQTLPGPWDDIE----EKAPEGSVLTGTVKRLTSFGAFVEV-FPGVEG 312

Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            L H+S++S  H+     + + G++VKVK+L VD E +R+ L MK+
Sbjct: 313  LVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEHQRLGLSMKA 357



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 4/136 (2%)

Query: 1272 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1331
            V  S ++D YVE    +F  G+ +  +++ +EP   R+ ++ K        ++     + 
Sbjct: 141  VPASMITDHYVEDL-NQFK-GQELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKEIFAK 198

Query: 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1391
            L  GD+V G++ R+ ++G FI +   +  GL HVSE+S DHVD    +  AG++VKVK+L
Sbjct: 199  LQPGDVVEGKVARMTNFGAFIDLGGVD--GLVHVSEISYDHVDKPSDVLEAGQEVKVKVL 256

Query: 1392 KVDKEKRRISLGMKSS 1407
             VD E+ RISL +K +
Sbjct: 257  NVDPERERISLSIKQT 272



 Score = 68.2 bits (165), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
           I++A   E      + ++PG VV+GKV  + +FGA +   GGV  L  +  +S   + KP
Sbjct: 183 IVQAQHEEAAKEIFAKLQPGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKP 241

Query: 406 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
               + G E+  +VL V  + +RI+++ K+TL      I     E +   +  G + ++ 
Sbjct: 242 SDVLEAGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAPEGS---VLTGTVKRLT 298

Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             G FV  + GV+G    S++       P+ +   GQ VK ++++  P  +R+ LS 
Sbjct: 299 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEHQRLGLSM 355



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 137/350 (39%), Gaps = 55/350 (15%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 529
           GV+G  P  EL   P  + +    VG  +   ++S I  + + N S+++   R+      
Sbjct: 48  GVEGVVPAKELSTKPVEDINDAVKVGDELDLVVISKI-GNDKENGSYLLSHRRLEARKVW 106

Query: 530 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
           DD+ K    G  ++  V       +VV    +G+   ++ T+H  + L            
Sbjct: 107 DDVQKKFDAGEHITAKVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK-------- 158

Query: 587 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 644
           G E +  ++    S N L+ +   ++ +  +  +    + + P  VV G V  +   G F
Sbjct: 159 GQELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKEIFAKLQPGDVVEGKVARMTNFGAF 218

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
           +  LG + G    S+         S     GQ V+  +L+V+ E  RI+LS+KQ+     
Sbjct: 219 ID-LGGVDGLVHVSEISYDHVDKPSDVLEAGQEVKVKVLNVDPERERISLSIKQTLPGPW 277

Query: 705 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 764
           D         +EEK                      GSV+ G V     FG  V  E   
Sbjct: 278 DD--------IEEKAPE-------------------GSVLTGTVKRLTSFGAFV--EVFP 308

Query: 765 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 807
            V G      I+H  +A     ++ G  ++  +L+V    + + LS+K +
Sbjct: 309 GVEGLVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEHQRLGLSMKAL 358



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 150/351 (42%), Gaps = 30/351 (8%)

Query: 362 VKPGMVVKGKVIAVDS-FGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           VK G VVKG+V+A+D    AIV     GV+ + P   +S   +       KVG EL   V
Sbjct: 21  VKVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKVGDELDLVV 80

Query: 420 LGV-----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
           +       ++    ++H++   +     +    +A + +     +T+  K G  V    G
Sbjct: 81  ISKIGNDKENGSYLLSHRRLEARKVWDDVQKKFDAGEHITAK--VTQAVKGGLVVDA--G 136

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSED 530
           V+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS       +    +++
Sbjct: 137 VRGFVPASMI-TDHYVEDLNQFK-GQELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKE 194

Query: 531 DLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 587
              KL  G +V G V  +T     + +   G   G +    ++ DH++  +    V++ G
Sbjct: 195 IFAKLQPGDVVEGKVARMTNFGAFIDL---GGVDGLVHVSEISYDHVDKPS---DVLEAG 248

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
            E   ++L +D E   + LS K +L      +   A      SV+ G V  +   G FV 
Sbjct: 249 QEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAPE---GSVLTGTVKRLTSFGAFVE 305

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
               + G    S+      A  +     GQ V+  +L+V+ E  R+ LS+K
Sbjct: 306 VFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVLNVDPEHQRLGLSMK 356



 Score = 44.7 bits (104), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 38/207 (18%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            +  GD+V G+++++ +   G  + +G  + G VH +E+    V  P         D L  
Sbjct: 199  LQPGDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEISYDHVDKP--------SDVLEA 247

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
               GQ VK KVL +         + LS++ +L                 PG   + IE+ 
Sbjct: 248  ---GQEVKVKVLNVDPERE---RISLSIKQTL-----------------PGP-WDDIEEK 283

Query: 1243 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            +P   ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+
Sbjct: 284  APEGSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKVKVLN 343

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINN 1328
            V+P  +R+ +++K  + R   + E NN
Sbjct: 344  VDPEHQRLGLSMKALEER--PKDEENN 368


>gi|75763037|ref|ZP_00742826.1| SSU ribosomal protein S1P [Bacillus thuringiensis serovar israelensis
            ATCC 35646]
 gi|74489469|gb|EAO52896.1| SSU ribosomal protein S1P [Bacillus thuringiensis serovar israelensis
            ATCC 35646]
          Length = 313

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 6/186 (3%)

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
             +++   K  E I  L    +V+G V+ +T  G F+ +   +D  V +S +S   VE P 
Sbjct: 102  VELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQPS 160

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1346
            +    G+ V  +VLSV+  ++R+ +++K +          N    +  GDI  G +KR+ 
Sbjct: 161  EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVAGEIKAGDIREGVVKRLV 216

Query: 1347 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            ++G F+ I    + GL HVS+++  HV N   +   G++VKVK+L+V   ++RISL +K 
Sbjct: 217  TFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKE 275

Query: 1407 SYFKND 1412
            +  +N+
Sbjct: 276  ALEENN 281



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
            GK +A +++ ++    RV ++ K          +   +S+L  GD+V G ++R+  +G F
Sbjct: 77   GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAF 136

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +   +  GL H+S++S + V+    +   G+KVKVK+L VD + +RISL +K++
Sbjct: 137  VNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAA 190



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 115 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 173

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 174 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKAGD--IREGVVKRLVTFGAFVEILPGVEG 230

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 530
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V ED
Sbjct: 231 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEALEENNVIED 285



 Score = 45.1 bits (105), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 126/294 (42%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 58   FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 111

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 112  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 168

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +                     + T    LS     PG    
Sbjct: 169  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 197

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 198  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 257

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K +          SQ E N + +   + DI+  Q+K++
Sbjct: 258  KVLEVHAAEKRISLSIKEALEENNVIEDYSQYEPNADSATFQLSDIIGEQLKKL 311


>gi|229096089|ref|ZP_04227062.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
 gi|229102201|ref|ZP_04232910.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
 gi|229115045|ref|ZP_04244455.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
 gi|407703968|ref|YP_006827553.1| histidinol-phosphate aminotransferase 1 [Bacillus thuringiensis MC28]
 gi|423380597|ref|ZP_17357881.1| ribosomal protein S1 [Bacillus cereus BAG1O-2]
 gi|423443629|ref|ZP_17420535.1| ribosomal protein S1 [Bacillus cereus BAG4X2-1]
 gi|423446117|ref|ZP_17422996.1| ribosomal protein S1 [Bacillus cereus BAG5O-1]
 gi|423466720|ref|ZP_17443488.1| ribosomal protein S1 [Bacillus cereus BAG6O-1]
 gi|423536117|ref|ZP_17512535.1| ribosomal protein S1 [Bacillus cereus HuB2-9]
 gi|423538639|ref|ZP_17515030.1| ribosomal protein S1 [Bacillus cereus HuB4-10]
 gi|423544877|ref|ZP_17521235.1| ribosomal protein S1 [Bacillus cereus HuB5-5]
 gi|423618255|ref|ZP_17594089.1| ribosomal protein S1 [Bacillus cereus VD115]
 gi|228668185|gb|EEL23617.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
 gi|228681102|gb|EEL35270.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
 gi|228687049|gb|EEL40954.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
 gi|401133210|gb|EJQ40843.1| ribosomal protein S1 [Bacillus cereus BAG5O-1]
 gi|401177223|gb|EJQ84415.1| ribosomal protein S1 [Bacillus cereus HuB4-10]
 gi|401183052|gb|EJQ90169.1| ribosomal protein S1 [Bacillus cereus HuB5-5]
 gi|401253986|gb|EJR60222.1| ribosomal protein S1 [Bacillus cereus VD115]
 gi|401631349|gb|EJS49146.1| ribosomal protein S1 [Bacillus cereus BAG1O-2]
 gi|402412715|gb|EJV45068.1| ribosomal protein S1 [Bacillus cereus BAG4X2-1]
 gi|402415430|gb|EJV47754.1| ribosomal protein S1 [Bacillus cereus BAG6O-1]
 gi|402461542|gb|EJV93255.1| ribosomal protein S1 [Bacillus cereus HuB2-9]
          Length = 382

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     S Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFSDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 41.2 bits (95), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 29/356 (8%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 529
           +GF P S + +    E  S Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFSDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 587
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDIVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 644
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
           V  L  + G    S+  +    + ++   +GQ V+  +L+V+    RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAL 346


>gi|227488118|ref|ZP_03918434.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227541514|ref|ZP_03971563.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
            51866]
 gi|227091980|gb|EEI27292.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227182670|gb|EEI63642.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
            51866]
          Length = 482

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 128/268 (47%), Gaps = 39/268 (14%)

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            GGL++ IG   +      E++ +   +P  G               Q ++ K++E+ +  
Sbjct: 134  GGLILDIGLRGFLPASLVEMRRVRDLEPYIG---------------QEIEAKIIELDKNR 178

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                +V LS R+ L+   S   S+              +  L    + +G V ++ + G 
Sbjct: 179  N---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGA 222

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +    
Sbjct: 223  FVDLG-GVDGLVHVSELSWKHIDHPSEVVSVGDEVTVEVLDVDLDRERVSLSLKAT---- 277

Query: 1321 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
              +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +
Sbjct: 278  -QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQV 335

Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKSS 1407
               G+++ VK++ +D E+RRISL +K +
Sbjct: 336  VSVGQEIMVKVIDIDLERRRISLSLKQA 363



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVSVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++G    SEL       P  +  VGQ +  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVSVGQEIMVKVIDIDLERRRISLSL 360



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 139/338 (41%), Gaps = 48/338 (14%)

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLLLSKKRAQYERAWGTIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H + + SV   G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVSV---GDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+          +   VGQ +   ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVSVGQEIMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGY 405


>gi|296272028|ref|YP_003654659.1| RNA binding S1 domain-containing protein [Arcobacter nitrofigilis DSM
            7299]
 gi|296096203|gb|ADG92153.1| RNA binding S1 domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 550

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 210/481 (43%), Gaps = 78/481 (16%)

Query: 931  SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA- 989
            S+V   I EI    + +  G    GR+HI+E+              +K+G T+   +   
Sbjct: 29   SVVDGVIVEISGENVSVDVGQKVEGRLHISEITIGGE-------VKYKVGDTIPVILTGI 81

Query: 990  KSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDN--EWAL 1046
            +  KP +  K  L +      +   +E    +  E   +SI  R  G++ + DN  E+ +
Sbjct: 82   RGEKPSISHKKVLQKEKFDAFVKEHTEDLEDVTIEGKIISIKPR-GGFIIEDDNGCEYFM 140

Query: 1047 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106
                 +LKAQ                     +GK V   VL IN+ +  + +  +     
Sbjct: 141  PMAQSYLKAQ-------------------GALGKKVKAKVLKINEAQNSIIVSRKKL--- 178

Query: 1107 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1166
            I +  ++  +  +  F+    ++ G I KI S   G+ V +G  + G V++ E+      
Sbjct: 179  IEESKIE-KDAKVAQFLENDGLINGTIKKITSY--GMFVDLGG-IDGLVNYNEISY---- 230

Query: 1167 DPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226
                   +G  +P + Y EG  V  KVL   +  +   H+ LS++++L            
Sbjct: 231  -------KGPVNPSNYYAEGDEVTVKVLSYDKAKQ---HLSLSVKAALS----------- 269

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESP 1285
                 P + +    D+   + V   + N  S G F+ L   ++  + +S +S +  +++P
Sbjct: 270  ----NPWEEIRDELDVGDTITVT--ISNFESYGAFVNLGNDIEGLLHISEISWNKNLKNP 323

Query: 1286 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKR 1344
            +    +G  V   V+ ++   KR+ V+LK    +  ++      +  H VGDIV G++  
Sbjct: 324  KDLLTLGDEVNVEVIELDVDKKRLRVSLKNLQEKPFAK-----FTKEHKVGDIVTGKVAT 378

Query: 1345 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404
            +  +G F+T+ + +  GL H  E S +     + +Y+ G++++VKI+K+DKEK  ISL +
Sbjct: 379  LTEFGAFVTLGDVD--GLLHNEEASWEGNAKCKNLYKKGDELEVKIIKIDKEKENISLSI 436

Query: 1405 K 1405
            K
Sbjct: 437  K 437



 Score = 74.3 bits (181), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 117/516 (22%), Positives = 212/516 (41%), Gaps = 73/516 (14%)

Query: 320 EKKYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 377
           E KYK G  + V + G R  +   +   +L+   F+  V  H++    + ++GK+I++  
Sbjct: 65  EVKYKVGDTIPVILTGIRGEKPSISHKKVLQKEKFDAFVKEHTEDLEDVTIEGKIISIKP 124

Query: 378 FGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKT 434
            G  I++   G +   P+           GKK K       +VL +   +  I V+ KK 
Sbjct: 125 RGGFIIEDDNGCEYFMPMAQSYLKAQGALGKKVKA------KVLKINEAQNSIIVSRKKL 178

Query: 435 LVKSKLAILSSYAE--ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 492
           + +SK+   +  A+    D LI +G I KI  +G FV    G+ G    +E+       P
Sbjct: 179 IEESKIEKDAKVAQFLENDGLI-NGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNP 236

Query: 493 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLGSLVSGVVDVVTPNA 550
           S+ Y  G  V  +++S   A + ++LS     +   E+  D + +G  ++  V +    +
Sbjct: 237 SNYYAEGDEVTVKVLSYDKAKQHLSLSVKAALSNPWEEIRDELDVGDTIT--VTISNFES 294

Query: 551 VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSNL 603
              +V      +G +       H+   +  K++  P      G E + +++ LD +   L
Sbjct: 295 YGAFVNLGNDIEGLL-------HISEISWNKNLKNPKDLLTLGDEVNVEVIELDVDKKRL 347

Query: 604 LLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 661
            +S K     + Q+ P +  +  H    +V G V  + E G FV  LG + G     +A 
Sbjct: 348 RVSLK-----NLQEKPFAKFTKEHKVGDIVTGKVATLTEFGAFVT-LGDVDGLLHNEEAS 401

Query: 662 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 721
               A     Y  G  +   I+ ++ E   I+LS+K     S    F   H         
Sbjct: 402 WEGNAKCKNLYKKGDELEVKIIKIDKEKENISLSIK-DITDSPAKKFQATHK-------- 452

Query: 722 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT-- 779
                             IG +++G + +  DFG+ +  E++ D  G + +   A  T  
Sbjct: 453 ------------------IGDIVKGTIKDLKDFGLFIKLEDNLD--GLVRNEDFAPTTAD 492

Query: 780 -VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
            +E G  I+A ++++      V LS+K +   + RE
Sbjct: 493 NIEIGKEIEAVVVNIDTNRNRVRLSIKRLEQQQERE 528



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            +H E +ED++    ++G + ++  +G FI+     +       ++  Y+++   +  +GK
Sbjct: 105  EHTEDLEDVT----IEGKIISIKPRGGFIIEDD--NGCEYFMPMAQSYLKA---QGALGK 155

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             V  +VL +      + V+ K     +  + +      L    ++ G IK++ SYG+F+ 
Sbjct: 156  KVKAKVLKINEAQNSIIVSRKKLIEESKIEKDAKVAQFLENDGLINGTIKKITSYGMFVD 215

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +   +  GL + +E+S     N    Y  G++V VK+L  DK K+ +SL +K++
Sbjct: 216  LGGID--GLVNYNEISYKGPVNPSNYYAEGDEVTVKVLSYDKAKQHLSLSVKAA 267



 Score = 47.4 bits (111), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 14/161 (8%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--FPIGKLVAGRVLSVEP 1304
            IV G V  +T  G F+ L    D   LL N    +  + + +  +  G  +  +++ ++ 
Sbjct: 371  IVTGKVATLTEFGAFVTLG---DVDGLLHNEEASWEGNAKCKNLYKKGDELEVKIIKIDK 427

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
              + + +++K      A + +  +     +GDIV G IK ++ +GLFI +E+ NL GL  
Sbjct: 428  EKENISLSIKDITDSPAKKFQATH----KIGDIVKGTIKDLKDFGLFIKLED-NLDGLVR 482

Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              + +    DNIE     G++++  ++ +D  + R+ L +K
Sbjct: 483  NEDFAPTTADNIEI----GKEIEAVVVNIDTNRNRVRLSIK 519



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 89/439 (20%), Positives = 179/439 (40%), Gaps = 82/439 (18%)

Query: 396 HMSEFEIVKPGK-KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRL 453
           H+SE  I   G+ K+KVG  +   + G++ ++ +++HKK L K K  A +  + E  + +
Sbjct: 56  HISEITI--GGEVKYKVGDTIPVILTGIRGEKPSISHKKVLQKEKFDAFVKEHTEDLEDV 113

Query: 454 ITHGWITKIEKHGCF-VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----- 507
              G I  I+  G F +   NG + F P ++  L       +   +G+ VK +++     
Sbjct: 114 TIEGKIISIKPRGGFIIEDDNGCEYFMPMAQSYL------KAQGALGKKVKAKVLKINEA 167

Query: 508 -SSIPASRR--INLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 564
            +SI  SR+  I  S + K  +V++   ++   L++G +  +T   + V +   G   G 
Sbjct: 168 QNSIIVSRKKLIEESKIEKDAKVAQ--FLENDGLINGTIKKITSYGMFVDL---GGIDGL 222

Query: 565 IPTEHLADHLEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQ 617
           +    ++         K  + P   + +       +L  D    +L LS K +L N  ++
Sbjct: 223 VNYNEIS--------YKGPVNPSNYYAEGDEVTVKVLSYDKAKQHLSLSVKAALSNPWEE 274

Query: 618 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQ 676
           +  +   +     +   + N    G FV     + G    S+ + +    +      +G 
Sbjct: 275 IRDE---LDVGDTITVTISNFESYGAFVNLGNDIEGLLHISEISWNKNLKNPKDLLTLGD 331

Query: 677 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 736
            V   +++++ +  R+ +SLK +      A F +EH                        
Sbjct: 332 EVNVEVIELDVDKKRLRVSLK-NLQEKPFAKFTKEHK----------------------- 367

Query: 737 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG--------ATVESGSVIQA 788
              +G ++ GKV    +FG  V+     DV G + H++ A            + G  ++ 
Sbjct: 368 ---VGDIVTGKVATLTEFGAFVTL---GDVDGLL-HNEEASWEGNAKCKNLYKKGDELEV 420

Query: 789 AILDVAKAERLVDLSLKTV 807
            I+ + K +  + LS+K +
Sbjct: 421 KIIKIDKEKENISLSIKDI 439


>gi|239908954|ref|YP_002955696.1| 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
 gi|239798821|dbj|BAH77810.1| 30S ribosomal protein S1 [Desulfovibrio magneticus RS-1]
          Length = 576

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 150/348 (43%), Gaps = 34/348 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G  V G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQTVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ 266

Query: 425 --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +++++  K+ +      I   Y E T R+   G +T +  +G FV    GV+G    S
Sbjct: 267 DKQKVSLGMKQLIADPWENIAGKYPEDT-RM--SGKVTNLVDYGAFVELEPGVEGLVHIS 323

Query: 483 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 537
           E+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V      G+
Sbjct: 324 EMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--MKQVRPNPWDIVAEKYPEGT 381

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 591
           ++ G V  +T   + +     G   G     H++D     +  K V  PG  F       
Sbjct: 382 ILEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKSGDIVM 432

Query: 592 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 649
            ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGAMVKGTVTNITDFGLFVEVEE 488

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 489 GIEGLVHVSEISRKKVKTPAEIYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 63/385 (16%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1085
            GQ VTG V  +  E+ +      L   + I D +++    P EL       H+G  +   
Sbjct: 208  GQTVTGRVKNI-TEYGVFVDLGGLDGLMHITDMSWKRIKHPKEL------VHLGDELELK 260

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VLS +++K+ + L ++     I+D       +N+     E   + G+++ ++    G  V
Sbjct: 261  VLSFDQDKQKVSLGMKQL---IADPW-----ENIAGKYPEDTRMSGKVTNLVDY--GAFV 310

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
            ++ P + G VH +E+           +      P      G  V+  VL +    +    
Sbjct: 311  ELEPGVEGLVHISEMS----------WTRKLRHPSQMVHVGDEVEVVVLSVDPDKK---- 356

Query: 1206 VELSLRSSLDGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
                 R SL GM     N  D+              E      I++G VKN+T  G FI 
Sbjct: 357  -----RISL-GMKQVRPNPWDIVA------------EKYPEGTILEGSVKNITEFGIFIG 398

Query: 1264 LSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
            +   +D  + +S++S    V  P + F  G +V  +VL+V+  +++  + +K       S
Sbjct: 399  IEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKENEKFTLGIKQ-----LS 453

Query: 1323 QSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1381
            +     + + + VG +V G +  +  +GLF+ +E   + GL HVSE+S   V     IY+
Sbjct: 454  EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEE-GIEGLVHVSEISRKKVKTPAEIYK 512

Query: 1382 AGEKVKVKILKVDKEKRRISLGMKS 1406
             G++++ K++ V  ++RR+ L +KS
Sbjct: 513  EGDEIEAKVIHVSADERRLGLSIKS 537



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 9/166 (5%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L     V G VKN+T  G F+ L   LD  + ++++S   ++ P++   +G  +  +VLS
Sbjct: 205  LEEGQTVTGRVKNITEYGVFVDLG-GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI-GQIKRVESYGLFITIENTNLV 1360
             +   ++V + +K      A   E  N++  +  D  + G++  +  YG F+ +E   + 
Sbjct: 264  FDQDKQKVSLGMK---QLIADPWE--NIAGKYPEDTRMSGKVTNLVDYGAFVELE-PGVE 317

Query: 1361 GLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            GL H+SE+S    + +   +   G++V+V +L VD +K+RISLGMK
Sbjct: 318  GLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMK 363



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 6/123 (4%)

Query: 1285 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQI 1342
            P+ +  +G+    RVL +      V V+ +    + R + + ++  L  L  G  V G++
Sbjct: 158  PDMDALVGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL--LKTLEEGQTVTGRV 215

Query: 1343 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
            K +  YG+F+ +    L GL H++++S   + + + +   G+++++K+L  D++K+++SL
Sbjct: 216  KNITEYGVFVDL--GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSL 273

Query: 1403 GMK 1405
            GMK
Sbjct: 274  GMK 276



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 143/376 (38%), Gaps = 81/376 (21%)

Query: 466 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 519
           G +     GV+ F P S + L P  +  ++  VGQ  + R++      S++  SRR+ L 
Sbjct: 134 GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKINRRRSNVIVSRRVLLE 191

Query: 520 FMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPT 567
                 R    DL+K    G  V+G V  +T   V V         ++    + +   P 
Sbjct: 192 ERRDSMR---KDLLKTLEEGQTVTGRVKNITEYGVFVDLGGLDGLMHITDMSWKRIKHPK 248

Query: 568 E--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
           E  HL D LE                ++L  D +   + L  K  + +  + +   A   
Sbjct: 249 ELVHLGDELEL---------------KVLSFDQDKQKVSLGMKQLIADPWENI---AGKY 290

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILD 684
             ++ + G V N+++ G FV     + G    S+    ++    S+  +VG  V   +L 
Sbjct: 291 PEDTRMSGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLS 350

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  RI+L +KQ   +  D                              E +  G+++
Sbjct: 351 VDPDKKRISLGMKQVRPNPWDIV---------------------------AEKYPEGTIL 383

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGSVIQAAILDVAKA 796
           EG V    +FG+ +  E+  D  G I    ++        G   +SG ++ A +L V K 
Sbjct: 384 EGSVKNITEFGIFIGIEDGID--GLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKE 441

Query: 797 ERLVDLSLKTVFIDRF 812
                L +K +  D +
Sbjct: 442 NEKFTLGIKQLSEDPW 457



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 168/390 (43%), Gaps = 47/390 (12%)

Query: 55  VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG  +T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQTVTGRVKNITEYG 222

Query: 114 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS-----S 164
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLGMKQLIA 280

Query: 165 DP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 223
           DP + ++    +D +            +S +V ++++ G  +       G V I  +  T
Sbjct: 281 DPWENIAGKYPEDTR------------MSGKVTNLVDYGAFVELEPGVEGLVHISEMSWT 328

Query: 224 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIY 277
               +     +   +V   +L VDP  + + L +     NP+ ++  + P   +  G + 
Sbjct: 329 RKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTILEGSVK 388

Query: 278 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF 336
           + ++        G+ + I          + +SD++  ++VR   + +K G  V  ++L  
Sbjct: 389 NITE-------FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTV 438

Query: 337 -RHLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPL 394
            +  E    GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +
Sbjct: 439 DKENEKFTLGIKQLS--EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHV 496

Query: 395 PHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
             +S  ++  P + +K G E+  +V+ V +
Sbjct: 497 SEISRKKVKTPAEIYKEGDEIEAKVIHVSA 526


>gi|331002422|ref|ZP_08325940.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330410238|gb|EGG89672.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 368

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 179/394 (45%), Gaps = 72/394 (18%)

Query: 1069 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1125
            L E  +  H G+ V G V+ + +++ +L +  +   DGI  ++ + SNDN   ++T ++ 
Sbjct: 10   LDESFKTLHTGEVVNGKVIDVKEDQIILNVGFKS--DGIITRS-EYSNDNSLDLRTVVNV 66

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD +  ++ KI  G G +++      Y R+                 D G       ++ 
Sbjct: 67   GDDMEAKVLKINDGEGQVLLS-----YKRL---------------AQDRGNKKLEDAFNN 106

Query: 1186 GQFVKCKVLEISRTVRGTFHV-----ELSLRSSLDGMSSTNSSDLSTDVDTP-------- 1232
             + +  KV+++   V G   V      + + +SL  +S T   DLS   DT         
Sbjct: 107  HEVLTGKVIQV---VEGGLSVVVEDARVFIPASL--VSDTFERDLSKYKDTEIEFVITEF 161

Query: 1233 ----------------GKHLEK----IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1272
                             K  E+     E ++P  +++G VKNVT  G F+ L    D  +
Sbjct: 162  NPKRRRIIGDRKQLLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVDLG-GADGLL 220

Query: 1273 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1332
             +S +S G VE+P+K F  G+ V   +  +    +++ +++K  D      +E       
Sbjct: 221  HISEMSWGRVENPKKVFKSGETVTAFIKDIS--GEKIALSMKFPDQNPWLDAE----EKF 274

Query: 1333 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1392
              G++V G++ R+  +G F+ I N  +  L HVS++S DHV+    + + G++V+  I++
Sbjct: 275  ARGNVVKGRVARMTDFGAFVEISN-GVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVE 333

Query: 1393 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1426
             ++  ++ISL +K+    N+    + +   ES+E
Sbjct: 334  FNEADKKISLSIKALTQANEELEKENARNSESEE 367



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 17/244 (6%)

Query: 281 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRILG 335
           KV++V  G GL + +    V  PA + +SD  E ++ K     +E    E +  R RI+G
Sbjct: 113 KVIQVVEG-GLSVVVEDARVFIPASL-VSDTFERDLSKYKDTEIEFVITEFNPKRRRIIG 170

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 395
            R        +L A   E        + PG V++G V  V  FGA V   GG   L  + 
Sbjct: 171 DRKQ------LLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVDL-GGADGLLHIS 223

Query: 396 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 455
            MS   +  P K FK G  +   +  +  ++I ++ K       L     +A      + 
Sbjct: 224 EMSWGRVENPKKVFKSGETVTAFIKDISGEKIALSMKFPDQNPWLDAEEKFARGN---VV 280

Query: 456 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515
            G + ++   G FV   NGV      S++  D   +PS +  VG  V+  I+    A ++
Sbjct: 281 KGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKK 340

Query: 516 INLS 519
           I+LS
Sbjct: 341 ISLS 344



 Score = 45.1 bits (105), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 138/342 (40%), Gaps = 49/342 (14%)

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDDL 532
           G   RSE   D   +  ++ +VG  ++ +++       ++ LS+      +  +  ED  
Sbjct: 45  GIITRSEYSNDNSLDLRTVVNVGDDMEAKVLKINDGEGQVLLSYKRLAQDRGNKKLEDAF 104

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
                L   V+ VV     VV   A+ +    IP   ++D  E    +        EF  
Sbjct: 105 NNHEVLTGKVIQVVEGGLSVVVEDARVF----IPASLVSDTFERD--LSKYKDTEIEF-- 156

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           ++   N     ++  +  L+ + ++    A    I P  V+ G V N+ + G FV  LG 
Sbjct: 157 VITEFNPKRRRIIGDRKQLLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVD-LGG 215

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
             G    S+   G+  +  K +  G++V + I D++ E  +I LS+K          F  
Sbjct: 216 ADGLLHISEMSWGRVENPKKVFKSGETVTAFIKDISGE--KIALSMK----------FPD 263

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
           ++  L+ +                 E F  G+V++G+V    DFG  V      D    +
Sbjct: 264 QNPWLDAE-----------------EKFARGNVVKGRVARMTDFGAFVEISNGVDALLHV 306

Query: 771 T-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 807
           +     H +     ++ G  ++A I++  +A++ + LS+K +
Sbjct: 307 SQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKKISLSIKAL 348


>gi|377567693|ref|ZP_09796900.1| 30S ribosomal protein S1 [Gordonia terrae NBRC 100016]
 gi|377535091|dbj|GAB42065.1| 30S ribosomal protein S1 [Gordonia terrae NBRC 100016]
          Length = 491

 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IG+   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  V-DEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 160/410 (39%), Gaps = 50/410 (12%)

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           + S ++ V    T      AI S+     D  I  G I K+++    +      +G  P 
Sbjct: 6   ITSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPS 65

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSL 538
            EL +    +P+ + +VG  V+  +++      R+ LS      +    + ++L +    
Sbjct: 66  RELSIKHDVDPNEVVNVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEA 125

Query: 539 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 597
           V G V  V    +++ +  +G+   ++        +E   V       G E + +++ LD
Sbjct: 126 VKGTVIEVVKGGLILDIGLRGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELD 177

Query: 598 NESSNLLLSAKYSLINSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 656
              +N++LS +  L  +  ++ S+  H +    V  G V +I+  G FV  LG + G   
Sbjct: 178 KNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVH 236

Query: 657 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 716
            S+         S+   VG  V   +LDV+ +  R++LSLK +        F + H    
Sbjct: 237 VSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH---- 291

Query: 717 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 776
                                  IG ++ GKV +   FG  V  +E   + G +   +LA
Sbjct: 292 ----------------------AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELA 327

Query: 777 GATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
              VE        G      ++D+    R + LSLK    D   E + ++
Sbjct: 328 ERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 48.1 bits (113), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407


>gi|50954808|ref|YP_062096.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951290|gb|AAT88991.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 480

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 181/412 (43%), Gaps = 66/412 (16%)

Query: 1008 PSMLTVSEIGSKLLFEECD------VSIGQRVTGYVYKVDNEWALLTISRH----LKAQL 1057
            P  + V++IGS   F           + G  + G V K+D +  LL +       + ++ 
Sbjct: 10   PKQVAVNDIGSAEDFLAAVEKTLKFFNDGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRE 69

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
              +    +PSE+        +G  V   VL   KE K  RL+L   +        D+   
Sbjct: 70   LSIKHDIDPSEV------VDVGDTVEALVL--QKEDKEGRLILSKKRAQYERAWGDVEK- 120

Query: 1118 NMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1176
                 I + D +V G + +++ G  GL+V IG   +      EL+ +    P  G     
Sbjct: 121  -----IKDADGVVTGTVIEVVKG--GLIVDIGLRGFLPASLIELRRVRDLTPYLG----- 168

Query: 1177 FDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1236
                      Q ++ K+LE+ +      +V LS R+ L+   S + +             
Sbjct: 169  ----------QEIEAKILELDKNRN---NVVLSRRALLEQTQSESRTTF----------- 204

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
              + +L    + +G V ++ + G F+ L   +D  V +S LS  ++E   +   +G+ V 
Sbjct: 205  --LNNLYKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIEHASEVVEVGQEVT 261

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1355
              +L V+   +RV ++LK +      +      +  H +G +  G++ ++  +G F+ + 
Sbjct: 262  VEILEVDLDRERVSLSLKAT-----QEDPWQVFARTHAIGQVAPGKVTKLVPFGAFVRVA 316

Query: 1356 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  + GL H+SELS  HV+  E +   GE+V VK++ +D E+RRISL +K +
Sbjct: 317  D-GIEGLVHISELSGKHVELAEQVVSVGEEVFVKVIDIDLERRRISLSLKQA 367



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 148/362 (40%), Gaps = 40/362 (11%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  +  G + KI++    +      +G  P  EL +    +PS +  VG  V+  ++   
Sbjct: 37  DGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDIDPSEVVDVGDTVEALVLQKE 96

Query: 511 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS        +  D+ K+     +V+G V  V    ++V +  +G+    +P 
Sbjct: 97  DKEGRLILSKKRAQYERAWGDVEKIKDADGVVTGTVIEVVKGGLIVDIGLRGF----LP- 151

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SH 624
              A  +E   V       G E + ++L LD   +N++LS + +L+   Q        ++
Sbjct: 152 ---ASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLS-RRALLEQTQSESRTTFLNN 207

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           ++   V  G V +I+  G FV  LG + G    S+         S+   VGQ V   IL+
Sbjct: 208 LYKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILE 266

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-IGSV 743
           V+ +  R++LSLK +        F + H       A+ Q +    ++L     F+ +   
Sbjct: 267 VDLDRERVSLSLKATQEDPWQV-FARTH-------AIGQVAPGKVTKLVPFGAFVRVADG 318

Query: 744 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
           IEG VH S   G                H +LA   V  G  +   ++D+    R + LS
Sbjct: 319 IEGLVHISELSG---------------KHVELAEQVVSVGEEVFVKVIDIDLERRRISLS 363

Query: 804 LK 805
           LK
Sbjct: 364 LK 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 156/349 (44%), Gaps = 33/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +++G V+ +D    ++      + + P   +S    + P +   VG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDIDPSEVVDVGDTVEALVLQKED 97

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +A D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVEKIKDA-DGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R +  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRTTFLNNLY 209

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  Q      +  H    V  G V  ++  G FVR    +
Sbjct: 264 ILEVDLDRERVSLSLKATQEDPWQVF----ARTHAIGQVAPGKVTKLVPFGAFVRVADGI 319

Query: 652 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+ + G+  +L+ +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGEEVFVKVIDIDLERRRISLSLKQA 367


>gi|423454947|ref|ZP_17431800.1| ribosomal protein S1 [Bacillus cereus BAG5X1-1]
 gi|423472523|ref|ZP_17449266.1| ribosomal protein S1 [Bacillus cereus BAG6O-2]
 gi|401135226|gb|EJQ42829.1| ribosomal protein S1 [Bacillus cereus BAG5X1-1]
 gi|402428055|gb|EJV60153.1| ribosomal protein S1 [Bacillus cereus BAG6O-2]
          Length = 382

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 44.3 bits (103), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|363899147|ref|ZP_09325658.1| hypothetical protein HMPREF9625_00318 [Oribacterium sp. ACB1]
 gi|395209528|ref|ZP_10398622.1| S1 RNA binding domain protein [Oribacterium sp. ACB8]
 gi|361959477|gb|EHL12764.1| hypothetical protein HMPREF9625_00318 [Oribacterium sp. ACB1]
 gi|394705159|gb|EJF12688.1| S1 RNA binding domain protein [Oribacterium sp. ACB8]
          Length = 368

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 183/395 (46%), Gaps = 76/395 (19%)

Query: 1069 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1125
            L+E  +  H G+ VTG V+S+  ++  L +  +   DGI  ++ D S DN   + T +  
Sbjct: 10   LEESLKSVHAGEIVTGTVISVKPDEIALNIGYK--SDGIMTRS-DYSADNQLDLTTVVKV 66

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD +  ++ K+  G G +V+     L  +    EL+                     ++E
Sbjct: 67   GDEIECKVKKVNDGEGQVVLSHRDALQSKAS-EELRK-------------------AFEE 106

Query: 1186 GQFVKCKVLEISRTVRGTFHVELS-----LRSSLDGMSSTNSSDLS----TDVD------ 1230
               +  KV+++   V+G  +VE+      + +SL  +S +   DL+     D+       
Sbjct: 107  NAILTGKVVQV---VKGGLNVEVDGARIFVPASL--VSDSFERDLNKYQGQDIQFVITEF 161

Query: 1231 TPGK------------------HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1272
             P K                  H +   +L+   +  G VKN+T  G FI L    D  +
Sbjct: 162  NPAKRRIIGDRKQIMSAQKKEQHDKLFSELAEGDVRTGVVKNLTDFGAFIDLG-GADGLL 220

Query: 1273 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1332
             +S +S G +E+P+K F  G+ V   VL  E   +R+ +T K  +      +E    S  
Sbjct: 221  HISEMSWGRIENPKKLFKPGQEV--EVLVKEISGERIALTRKFPNENPWKDAE----SKY 274

Query: 1333 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1392
             VG+IV G++ R+  +G FI + +  +  L HVS++S+DHV+    +   G++++ +++ 
Sbjct: 275  AVGEIVKGKVARMTDFGAFIEL-DKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVD 333

Query: 1393 VDKEKRRISLGMKSSYFKNDAD----NLQMSSEEE 1423
            +D +  +ISL +K+   +++ D    ++  +SEEE
Sbjct: 334  LDVDNHKISLSIKALLPEDEQDTADVDVAAASEEE 368



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 15/244 (6%)

Query: 281 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---- 336
           KVV+V +G GL +++    +  PA + +SD  E ++ K +     G  ++  I  F    
Sbjct: 113 KVVQVVKG-GLNVEVDGARIFVPASL-VSDSFERDLNKYQ-----GQDIQFVITEFNPAK 165

Query: 337 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 396
           R + G    I+ A   E      S++  G V  G V  +  FGA +   GG   L  +  
Sbjct: 166 RRIIGDRKQIMSAQKKEQHDKLFSELAEGDVRTGVVKNLTDFGAFIDL-GGADGLLHISE 224

Query: 397 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 456
           MS   I  P K FK G E+   V  +  +RI +T K           S YA      I  
Sbjct: 225 MSWGRIENPKKLFKPGQEVEVLVKEISGERIALTRKFPNENPWKDAESKYAVGE---IVK 281

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
           G + ++   G F+    G+      S++  D   +PS +   GQ ++ R++     + +I
Sbjct: 282 GKVARMTDFGAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHKI 341

Query: 517 NLSF 520
           +LS 
Sbjct: 342 SLSI 345



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 153/359 (42%), Gaps = 37/359 (10%)

Query: 92  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQ 147
           SL++V  G ++T  V S++     L+ G  S  G + R++ + ++ +D    VK G  ++
Sbjct: 13  SLKSVHAGEIVTGTVISVKPDEIALNIGYKS-DGIMTRSDYSADNQLDLTTVVKVGDEIE 71

Query: 148 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 207
             V+ ++     V LS      SK   +  K    + ++ G +V           V+   
Sbjct: 72  CKVKKVNDGEGQVVLSHRDALQSKASEELRKAFEENAILTGKVVQ----------VVKGG 121

Query: 208 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD--PTSRAVGLTLNPYLLHNR 265
           L        IF +  +  + +++ D N+++  + + +  +  P  R + +     ++  +
Sbjct: 122 LNVEVDGARIF-VPASLVSDSFERDLNKYQGQDIQFVITEFNPAKRRI-IGDRKQIMSAQ 179

Query: 266 APPSHVKV------GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 319
               H K+      GD+  ++ VV+     G  +D+          + IS+++   +   
Sbjct: 180 KKEQHDKLFSELAEGDV--RTGVVKNLTDFGAFIDLGGAD----GLLHISEMSWGRIENP 233

Query: 320 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG-LVFTHSDVKPGMVVKGKVIAVDSF 378
           +K +K G  V V +   + + G    + +    E       S    G +VKGKV  +  F
Sbjct: 234 KKLFKPGQEVEVLV---KEISGERIALTRKFPNENPWKDAESKYAVGEIVKGKVARMTDF 290

Query: 379 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTHKKTL 435
           GA ++   G+ AL  +  +S+  + KP    + G E+  RV  L V + +I+++ K  L
Sbjct: 291 GAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHKISLSIKALL 349


>gi|268316851|ref|YP_003290570.1| 30S ribosomal protein S1 [Rhodothermus marinus DSM 4252]
 gi|262334385|gb|ACY48182.1| ribosomal protein S1 [Rhodothermus marinus DSM 4252]
          Length = 720

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 7/166 (4%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            + P  +++G VKN+T  G FI L   +D  + +++LS G V  P +   +G+ +   VL 
Sbjct: 289  MEPGQVLEGTVKNITDFGVFIDLG-GVDGLLHITDLSWGRVSHPSELVQLGQKLNVVVLD 347

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
             +   +R+ + LK            N       GD+V G++  +  YG F+ +E   + G
Sbjct: 348  YDKERQRISLGLKQLQPHPWE----NIDEKYKEGDVVEGKVVSITDYGAFVELEK-GIEG 402

Query: 1362 LCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            L H+SE+S  DH+ +       G+ VKVKIL +D+E R+ISLGMK 
Sbjct: 403  LVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQ 448



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 96/166 (57%), Gaps = 15/166 (9%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1305
            +V+G V ++T  G F+ L + ++  V +S +S   +++ P ++  +G+LV  ++L+++  
Sbjct: 379  VVEGKVVSITDYGAFVELEKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDRE 438

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLH----VGDIVIGQIKRVESYGLFITIENTNLVG 1361
             +++ + +K        Q E N    L      G ++ G+++++ ++G+F+ IE   + G
Sbjct: 439  GRKISLGMK--------QLEPNPWEGLSKRYPPGTVLRGKVRKITNFGVFVEIE-PGIDG 489

Query: 1362 LCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            L H+S+LS    + +   + + GE++ V +L+VD+E RRISLG K 
Sbjct: 490  LVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDEENRRISLGHKQ 535



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 17/159 (10%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IGK +  +++ + P ++ V V+ +    +   +     LS +  G ++ G +K +  +G+
Sbjct: 248  IGKRMEFKIVKINPANENVVVSHRALLEKELQKQREEILSKMEPGQVLEGTVKNITDFGV 307

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
            FI +   +  GL H+++LS   V +   + + G+K+ V +L  DKE++RISLG+K     
Sbjct: 308  FIDLGGVD--GLLHITDLSWGRVSHPSELVQLGQKLNVVVLDYDKERQRISLGLK----- 360

Query: 1411 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1449
                 LQ    E  DE       Y    ++E   V++ D
Sbjct: 361  ----QLQPHPWENIDE------KYKEGDVVEGKVVSITD 389



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 146/350 (41%), Gaps = 34/350 (9%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S ++PG V++G V  +  FG  +   GGV  L  +  +S   +  P +  ++G +L   V
Sbjct: 287 SKMEPGQVLEGTVKNITDFGVFIDL-GGVDGLLHITDLSWGRVSHPSELVQLGQKLNVVV 345

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L    + +RI++  K+        I   Y E     +  G +  I  +G FV    G++G
Sbjct: 346 LDYDKERQRISLGLKQLQPHPWENIDEKYKEGD---VVEGKVVSITDYGAFVELEKGIEG 402

Query: 478 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL 535
               SE+   D    PS    +GQ+VK +I++     R+I+L    ++P     + L K 
Sbjct: 403 LVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQLEPN--PWEGLSKR 460

Query: 536 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 587
              G+++ G V  +T   V V +       G     H++D      ++H +    V+K G
Sbjct: 461 YPPGTVLRGKVRKITNFGVFVEI-----EPGIDGLVHISDLSWTRRIQHPS---EVVKEG 512

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH-GYVCNIIETGCFV 645
            E D  +L +D E+  + L  K    N      +D + ++     H   V  I + G  V
Sbjct: 513 EELDVVVLEVDEENRRISLGHKQVQTNPW----NDFATVYAEGTDHKARVVRIEDNGLVV 568

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
                +  F P  +       +  + Y+VG  +   ++  ++    I +S
Sbjct: 569 ELPLGVEAFVPAGEL--KHSKNFQEFYHVGDELELRVVRFSAADREIVMS 616



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 44/238 (18%)

Query: 584 IKPGYEFD---------QLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVVHG 633
           ++P  +FD         +++ ++  + N+++S +  L    Q Q     S + P  V+ G
Sbjct: 238 VRPVRDFDAYIGKRMEFKIVKINPANENVVVSHRALLEKELQKQREEILSKMEPGQVLEG 297

Query: 634 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            V NI + G F+  LG + G    +    G+ +  S+   +GQ +   +LD + E  RI+
Sbjct: 298 TVKNITDFGVFID-LGGVDGLLHITDLSWGRVSHPSELVQLGQKLNVVVLDYDKERQRIS 356

Query: 694 LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 753
           L LKQ                       LQ       + K+ E    G V+EGKV    D
Sbjct: 357 LGLKQ-----------------------LQPHPWENIDEKYKE----GDVVEGKVVSITD 389

Query: 754 FGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
           +G  V  E+      H     +  H +     V  G +++  IL++ +  R + L +K
Sbjct: 390 YGAFVELEKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMK 447



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 144/339 (42%), Gaps = 56/339 (16%)

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1125
            PSEL        +G+ +   VL  +KE++ + L L+  Q            +N+     E
Sbjct: 331  PSEL------VQLGQKLNVVVLDYDKERQRISLGLKQLQPH--------PWENIDEKYKE 376

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD+V G++  I     G  V++   + G VH +E+     +D +         P      
Sbjct: 377  GDVVEGKVVSITDY--GAFVELEKGIEGLVHISEM---SWTDHIK-------HPSQKVSL 424

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK K+L I R  R     ++SL     GM     +        P + L K     P 
Sbjct: 425  GQLVKVKILNIDREGR-----KISL-----GMKQLEPN--------PWEGLSK--RYPPG 464

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEP 1304
             +++G V+ +T+ G F+ +   +D  V +S+LS    ++ P +    G+ +   VL V+ 
Sbjct: 465  TVLRGKVRKITNFGVFVEIEPGIDGLVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDE 524

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLC 1363
             ++R+ +  K   +     +  N+ + ++  G     ++ R+E  GL + +    +    
Sbjct: 525  ENRRISLGHKQVQT-----NPWNDFATVYAEGTDHKARVVRIEDNGLVVEL-PLGVEAFV 578

Query: 1364 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
               EL   H  N +  Y  G+++++++++     R I +
Sbjct: 579  PAGELK--HSKNFQEFYHVGDELELRVVRFSAADREIVM 615



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 95/467 (20%), Positives = 188/467 (40%), Gaps = 64/467 (13%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           + + V  G +VKG+++AV     I+        +       + EI KPG + +V    V 
Sbjct: 117 SFTTVNEGEIVKGRILAVGEKEVIIDIGFKSTGIVSRNEFGDAEI-KPGDEVEV---FVE 172

Query: 418 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           R+   + + +    K   V+    +  +Y    +  +  G I +  K G     ++G++ 
Sbjct: 173 RLEDAQGQLVLSKLKADRVRRWERVEDAY---YNEKVIEGTIVRRVKGGMIAEIFDGLEA 229

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSEDDLV 533
           F P S++ + P  +  +  ++G+ ++ +I+   PA+  + +S       +  +  E+ L 
Sbjct: 230 FLPGSQIDVRPVRDFDA--YIGKRMEFKIVKINPANENVVVSHRALLEKELQKQREEILS 287

Query: 534 KL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPG 587
           K+  G ++ G V  +T   V + +   G   G +   H+ D     + H +    +++ G
Sbjct: 288 KMEPGQVLEGTVKNITDFGVFIDL---GGVDGLL---HITDLSWGRVSHPS---ELVQLG 338

Query: 588 YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
            + + ++VLD +     +S     +        D  +     VV G V +I + G FV  
Sbjct: 339 QKLN-VVVLDYDKERQRISLGLKQLQPHPWENIDEKYKE-GDVVEGKVVSITDYGAFVEL 396

Query: 648 LGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
              + G    S+ +        S+   +GQ V+  IL+++ E  +I+L +KQ        
Sbjct: 397 EKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQ-------- 448

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE---- 762
                          L+ +   G   +    +  G+V+ GKV +  +FGV V  E     
Sbjct: 449 ---------------LEPNPWEGLSKR----YPPGTVLRGKVRKITNFGVFVEIEPGIDG 489

Query: 763 --HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 807
             H     +    Q     V+ G  +   +L+V +  R + L  K V
Sbjct: 490 LVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDEENRRISLGHKQV 536


>gi|227872165|ref|ZP_03990534.1| possible ribosomal protein S1 [Oribacterium sinus F0268]
 gi|227841994|gb|EEJ52255.1| possible ribosomal protein S1 [Oribacterium sinus F0268]
          Length = 367

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 179/394 (45%), Gaps = 72/394 (18%)

Query: 1069 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1125
            L+E  +  H G+ VTG V+S+  ++  L +  +   DGI  ++ D S DN   + T +  
Sbjct: 10   LEESLKSVHAGEIVTGTVISVKPDEIALNIGYK--SDGIMTRS-DYSADNQLDLTTVVSV 66

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD +  ++ K+  G G +V+     L  +    EL+                     ++E
Sbjct: 67   GDEIECKVKKVNDGEGQVVLSHRDALQSKAS-EELRK-------------------AFEE 106

Query: 1186 GQFVKCKVLEISRTVRGTFHVELS-----LRSSLDGMSSTNSSDLS----TDVD------ 1230
               +  KV+++   V+G  +VE+      + +SL  +S +   DL+     D+       
Sbjct: 107  NAILTGKVVQV---VKGGLNVEVDGARIFVPASL--VSDSFERDLNKYQGQDIQFVITEF 161

Query: 1231 TPGK------------------HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1272
             P K                  H +   +L    I  G VKN+T  G FI L    D  +
Sbjct: 162  NPAKRRIIGDRKQIMSAMKKEQHDKLFSELKEGDIRTGVVKNLTDFGAFIDLG-GADGLL 220

Query: 1273 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1332
             +S +S G +E+P+K F  G+ V   VL  E   +R+ +T K  +      +E    S  
Sbjct: 221  HISEMSWGRIENPKKLFKPGQEV--EVLVKEISGERIALTRKFPNENPWKDAE----SKY 274

Query: 1333 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1392
             VG+IV G++ R+  +G FI + +  +  L HVS++S+DHV+    +   G++++ +++ 
Sbjct: 275  AVGEIVTGRVARMTDFGAFIEL-DKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVD 333

Query: 1393 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1426
            +D +  +ISL +K+   + + D   +  E  S+E
Sbjct: 334  LDVDNHKISLSIKALLPEEEGDVADVDVEAASEE 367



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 17/245 (6%)

Query: 281 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK-----YKEGSCVRVRILG 335
           KVV+V +G GL +++    +  PA + +SD  E ++ K + +       E +  + RI+G
Sbjct: 113 KVVQVVKG-GLNVEVDGARIFVPASL-VSDSFERDLNKYQGQDIQFVITEFNPAKRRIIG 170

Query: 336 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 395
            R        I+ A   E      S++K G +  G V  +  FGA +   GG   L  + 
Sbjct: 171 DRKQ------IMSAMKKEQHDKLFSELKEGDIRTGVVKNLTDFGAFIDL-GGADGLLHIS 223

Query: 396 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 455
            MS   I  P K FK G E+   V  +  +RI +T K           S YA      I 
Sbjct: 224 EMSWGRIENPKKLFKPGQEVEVLVKEISGERIALTRKFPNENPWKDAESKYAVGE---IV 280

Query: 456 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515
            G + ++   G F+    G+      S++  D   +PS +   GQ ++ R++     + +
Sbjct: 281 TGRVARMTDFGAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHK 340

Query: 516 INLSF 520
           I+LS 
Sbjct: 341 ISLSI 345


>gi|331269557|ref|YP_004396049.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/ribosomal protein
            S1-like protein [Clostridium botulinum BKT015925]
 gi|329126107|gb|AEB76052.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal
            protein S1-like protein [Clostridium botulinum BKT015925]
          Length = 634

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 198/430 (46%), Gaps = 63/430 (14%)

Query: 987  IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD---VSIGQRVTGYVYKVDNE 1043
            + A ++ PD     + E  +K S  T SE+  +L + E +   V+IG  V G +  ++ +
Sbjct: 258  VTAGASTPDW---IIKEAILKMSEHTNSELNEQLAYMEQNDIQVAIGDTVKGQIISLNEK 314

Query: 1044 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1103
             A + I  + K  +  L  A    ++   +  F++G  V   V+S+      +  VL   
Sbjct: 315  EAFVNIG-YKKDGIIPLKEATRDEDVL-IKDLFNVGDEVEAKVISLKNSDDCI--VLSKI 370

Query: 1104 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1163
            +    +   +I N     F ++G+I    IS   S  GG++        GR      K +
Sbjct: 371  EIEREEAFKEIEN----AFNNKGEIT---ISIKESVNGGII--------GR-----YKGV 410

Query: 1164 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV----ELSLRSSLDGMSS 1219
             V  P S  +    D LS Y  GQ ++ K++E     +GT  V    EL +++       
Sbjct: 411  RVFVPASHVELFHVDDLSTYI-GQDMQVKIIEFKVNRKGTKIVASRRELLVKAQAQKKEG 469

Query: 1220 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1279
              +S                  L  + +V+G ++ +TS G F+ ++  +D  + +S +S 
Sbjct: 470  AWNS------------------LEKDQVVEGEIRRLTSFGAFVDVN-GIDGLLHVSEISW 510

Query: 1280 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDI 1337
            G VE PE    IG+ V   +L ++  +K++ +++K  T D  T  + +        +G I
Sbjct: 511  GRVEKPEDVLKIGEKVKVCILDIDKENKKLSLSIKKLTEDPWTNIEEK------YPIGSI 564

Query: 1338 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1397
            V+G++ R   +G F+ +E   + GL HVSE+S   ++    + +  E+VK KIL V+K+ 
Sbjct: 565  VLGKVVRFADFGAFVQLE-PGVDGLVHVSEISYKRINKPSDVLKVDEEVKAKILSVNKDG 623

Query: 1398 RRISLGMKSS 1407
            +R+SL +K +
Sbjct: 624  KRLSLSIKEA 633



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 16/205 (7%)

Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG--------MVVKGKVIAVDS 377
           G  ++V+I+ F+ +    T I+ AS  E LV   +  K G         VV+G++  + S
Sbjct: 432 GQDMQVKIIEFK-VNRKGTKIV-ASRRELLVKAQAQKKEGAWNSLEKDQVVEGEIRRLTS 489

Query: 378 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 435
           FGA V    G+  L  +  +S   + KP    K+G ++   +L +  ++K+++++ KK  
Sbjct: 490 FGAFVDV-NGIDGLLHVSEISWGRVEKPEDVLKIGEKVKVCILDIDKENKKLSLSIKKLT 548

Query: 436 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 495
                 I   Y   +   I  G + +    G FV+   GV G    SE+      +PS +
Sbjct: 549 EDPWTNIEEKYPIGS---IVLGKVVRFADFGAFVQLEPGVDGLVHVSEISYKRINKPSDV 605

Query: 496 YHVGQVVKCRIMSSIPASRRINLSF 520
             V + VK +I+S     +R++LS 
Sbjct: 606 LKVDEEVKAKILSVNKDGKRLSLSI 630


>gi|423676686|ref|ZP_17651625.1| ribosomal protein S1 [Bacillus cereus VDM062]
 gi|401307807|gb|EJS13232.1| ribosomal protein S1 [Bacillus cereus VDM062]
          Length = 382

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNTDSA 365



 Score = 44.3 bits (103), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 130/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEINNLS-NLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N  S    + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNTDSATFQLSDIIGEQLKKL 380


>gi|345303197|ref|YP_004825099.1| 30S ribosomal protein S1 [Rhodothermus marinus SG0.5JP17-172]
 gi|345112430|gb|AEN73262.1| ribosomal protein S1 [Rhodothermus marinus SG0.5JP17-172]
          Length = 709

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 7/166 (4%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            + P  +++G VKN+T  G FI L   +D  + +++LS G V  P +   +G+ +   VL 
Sbjct: 274  MEPGQVLEGTVKNITDFGVFIDLG-GVDGLLHITDLSWGRVSHPSELVQLGQKLNVVVLD 332

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
             +   +R+ + LK            N       GD+V G++  +  YG F+ +E   + G
Sbjct: 333  YDKERQRISLGLKQLQPHPWE----NIDEKYKEGDVVEGKVVSITDYGAFVELEK-GIEG 387

Query: 1362 LCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            L H+SE+S  DH+ +       G+ VKVKIL +D+E R+ISLGMK 
Sbjct: 388  LVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQ 433



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 96/166 (57%), Gaps = 15/166 (9%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1305
            +V+G V ++T  G F+ L + ++  V +S +S   +++ P ++  +G+LV  ++L+++  
Sbjct: 364  VVEGKVVSITDYGAFVELEKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDRE 423

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLH----VGDIVIGQIKRVESYGLFITIENTNLVG 1361
             +++ + +K        Q E N    L      G ++ G+++++ ++G+F+ IE   + G
Sbjct: 424  GRKISLGMK--------QLEPNPWEGLSKRYPPGTVLRGKVRKITNFGVFVEIE-PGIDG 474

Query: 1362 LCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            L H+S+LS    + +   + + GE++ V +L+VD+E RRISLG K 
Sbjct: 475  LVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDEENRRISLGHKQ 520



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 17/159 (10%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            IGK +  +++ + P ++ V V+ +    +   +     LS +  G ++ G +K +  +G+
Sbjct: 233  IGKRMEFKIVKINPANENVVVSHRALLEKELQKQREEILSKMEPGQVLEGTVKNITDFGV 292

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
            FI +   +  GL H+++LS   V +   + + G+K+ V +L  DKE++RISLG+K     
Sbjct: 293  FIDLGGVD--GLLHITDLSWGRVSHPSELVQLGQKLNVVVLDYDKERQRISLGLK----- 345

Query: 1411 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1449
                 LQ    E  DE       Y    ++E   V++ D
Sbjct: 346  ----QLQPHPWENIDE------KYKEGDVVEGKVVSITD 374



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 146/350 (41%), Gaps = 34/350 (9%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S ++PG V++G V  +  FG  +   GGV  L  +  +S   +  P +  ++G +L   V
Sbjct: 272 SKMEPGQVLEGTVKNITDFGVFIDL-GGVDGLLHITDLSWGRVSHPSELVQLGQKLNVVV 330

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L    + +RI++  K+        I   Y E     +  G +  I  +G FV    G++G
Sbjct: 331 LDYDKERQRISLGLKQLQPHPWENIDEKYKEGD---VVEGKVVSITDYGAFVELEKGIEG 387

Query: 478 FAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL 535
               SE+   D    PS    +GQ+VK +I++     R+I+L    ++P     + L K 
Sbjct: 388 LVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQLEPN--PWEGLSKR 445

Query: 536 ---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 587
              G+++ G V  +T   V V +       G     H++D      ++H +    V+K G
Sbjct: 446 YPPGTVLRGKVRKITNFGVFVEI-----EPGIDGLVHISDLSWTRRIQHPS---EVVKEG 497

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH-GYVCNIIETGCFV 645
            E D  +L +D E+  + L  K    N      +D + ++     H   V  I + G  V
Sbjct: 498 EELDVVVLEVDEENRRISLGHKQVQTNPW----NDFATVYAEGTDHKARVVRIEDNGLVV 553

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
                +  F P  +       +  + Y+VG  +   ++  ++    I +S
Sbjct: 554 ELPLGVEAFVPAGEL--KHSKNFQEFYHVGDELELRVVRFSAADREIVMS 601



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 44/240 (18%)

Query: 584 IKPGYEFD---------QLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVVHG 633
           ++P  +FD         +++ ++  + N+++S +  L    Q Q     S + P  V+ G
Sbjct: 223 VRPVRDFDAYIGKRMEFKIVKINPANENVVVSHRALLEKELQKQREEILSKMEPGQVLEG 282

Query: 634 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
            V NI + G F+  LG + G    +    G+ +  S+   +GQ +   +LD + E  RI+
Sbjct: 283 TVKNITDFGVFID-LGGVDGLLHITDLSWGRVSHPSELVQLGQKLNVVVLDYDKERQRIS 341

Query: 694 LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 753
           L LKQ                       LQ       + K+ E    G V+EGKV    D
Sbjct: 342 LGLKQ-----------------------LQPHPWENIDEKYKE----GDVVEGKVVSITD 374

Query: 754 FGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 807
           +G  V  E+      H     +  H +     V  G +++  IL++ +  R + L +K +
Sbjct: 375 YGAFVELEKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQL 434



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 144/339 (42%), Gaps = 56/339 (16%)

Query: 1066 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1125
            PSEL        +G+ +   VL  +KE++ + L L+  Q            +N+     E
Sbjct: 316  PSEL------VQLGQKLNVVVLDYDKERQRISLGLKQLQPH--------PWENIDEKYKE 361

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD+V G++  I     G  V++   + G VH +E+     +D +         P      
Sbjct: 362  GDVVEGKVVSITDY--GAFVELEKGIEGLVHISEM---SWTDHIK-------HPSQKVSL 409

Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
            GQ VK K+L I R  R     ++SL     GM     +        P + L K     P 
Sbjct: 410  GQLVKVKILNIDREGR-----KISL-----GMKQLEPN--------PWEGLSK--RYPPG 449

Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEP 1304
             +++G V+ +T+ G F+ +   +D  V +S+LS    ++ P +    G+ +   VL V+ 
Sbjct: 450  TVLRGKVRKITNFGVFVEIEPGIDGLVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDE 509

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLC 1363
             ++R+ +  K   +     +  N+ + ++  G     ++ R+E  GL + +    +    
Sbjct: 510  ENRRISLGHKQVQT-----NPWNDFATVYAEGTDHKARVVRIEDNGLVVEL-PLGVEAFV 563

Query: 1364 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
               EL   H  N +  Y  G+++++++++     R I +
Sbjct: 564  PAGELK--HSKNFQEFYHVGDELELRVVRFSAADREIVM 600



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 95/467 (20%), Positives = 188/467 (40%), Gaps = 64/467 (13%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           + + V  G +VKG+++AV     I+        +       + EI KPG + +V    V 
Sbjct: 102 SFTTVNEGEIVKGRILAVGEKEVIIDIGFKSTGIVSRNEFGDAEI-KPGDEVEV---FVE 157

Query: 418 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           R+   + + +    K   V+    +  +Y    +  +  G I +  K G     ++G++ 
Sbjct: 158 RLEDAQGQLVLSKLKADRVRRWERVEDAY---YNEKVIEGTIVRRVKGGMIAEIFDGLEA 214

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSEDDLV 533
           F P S++ + P  +  +  ++G+ ++ +I+   PA+  + +S       +  +  E+ L 
Sbjct: 215 FLPGSQIDVRPVRDFDA--YIGKRMEFKIVKINPANENVVVSHRALLEKELQKQREEILS 272

Query: 534 KL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPG 587
           K+  G ++ G V  +T   V + +   G   G +   H+ D     + H +    +++ G
Sbjct: 273 KMEPGQVLEGTVKNITDFGVFIDL---GGVDGLL---HITDLSWGRVSHPS---ELVQLG 323

Query: 588 YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
            + + ++VLD +     +S     +        D  +     VV G V +I + G FV  
Sbjct: 324 QKLN-VVVLDYDKERQRISLGLKQLQPHPWENIDEKYKE-GDVVEGKVVSITDYGAFVEL 381

Query: 648 LGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
              + G    S+ +        S+   +GQ V+  IL+++ E  +I+L +KQ        
Sbjct: 382 EKGIEGLVHISEMSWTDHIKHPSQKVSLGQLVKVKILNIDREGRKISLGMKQ-------- 433

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE---- 762
                          L+ +   G   +    +  G+V+ GKV +  +FGV V  E     
Sbjct: 434 ---------------LEPNPWEGLSKR----YPPGTVLRGKVRKITNFGVFVEIEPGIDG 474

Query: 763 --HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 807
             H     +    Q     V+ G  +   +L+V +  R + L  K V
Sbjct: 475 LVHISDLSWTRRIQHPSEVVKEGEELDVVVLEVDEENRRISLGHKQV 521


>gi|357010264|ref|ZP_09075263.1| RNA binding S1 domain-containing protein [Paenibacillus elgii B69]
          Length = 405

 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 180/378 (47%), Gaps = 48/378 (12%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            G  VTG V KVD + A++ +       + + +      +L   +    +G+ +   VL+I
Sbjct: 31   GDIVTGKVIKVDADQAVVDVGYKYDGIVSVRE--LSSVQLDNAEEIVQVGQEIELKVLTI 88

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
            +  K+ L L  R      S+K    S + +   +    I+  ++++++ G  GLVV +G 
Sbjct: 89   DDNKEKLVLSKRAID---SEK----SWEKLAADMENKTILEAKVAEVVKG--GLVVDVG- 138

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
             L G V  + ++   V D             S Y +G+ ++ +V E+ R       V LS
Sbjct: 139  -LRGFVPASMVERTFVED------------FSDY-KGRTLRLRVKEMDRE---KNKVILS 181

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
             +  LD        +L T      K  E I  LS    + G V+ +T  G F+ +   +D
Sbjct: 182  QKDVLD-------EELET------KKQETISKLSVGQELMGTVQRLTQFGAFVDIG-GVD 227

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1329
              V +S ++  +VE   +    G  V  +VL ++P ++R+ +++K +  +      + N 
Sbjct: 228  GLVHISEMAWHHVEHASEVVKEGDQVRVQVLKLDPANERISLSIKAT--QPGPWESVKN- 284

Query: 1330 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1389
              +++GDIV G +KR+  +G FI +    + GL H+S+++  H+     + + G++V+VK
Sbjct: 285  -KINIGDIVTGTVKRLVQFGAFIEV-APGVEGLVHISQIAHRHIATPFEVLKEGQEVQVK 342

Query: 1390 ILKVDKEKRRISLGMKSS 1407
            +L ++  ++RISL +K +
Sbjct: 343  VLDMNPGEKRISLSIKET 360



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 156/354 (44%), Gaps = 37/354 (10%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K G +V GKVI VD+  A+V        +  +  +S  ++    +  +VG E+  +VL 
Sbjct: 28  IKKGDIVTGKVIKVDADQAVVDVGYKYDGIVSVRELSSVQLDNAEEIVQVGQEIELKVLT 87

Query: 422 VKSKRITVTHKKTLVKSKLAILSS------YAEATDRLITHGWITKIEKHGCFVRFYNGV 475
           +        +K+ LV SK AI S        A+  ++ I    + ++ K G  V    G+
Sbjct: 88  IDD------NKEKLVLSKRAIDSEKSWEKLAADMENKTILEAKVAEVVKGGLVVDV--GL 139

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRI------MSSIPASRRINLSFMMKPTRVSE 529
           +GF P S +      E  S Y  G+ ++ R+       + +  S++  L   ++  +   
Sbjct: 140 RGFVPAS-MVERTFVEDFSDYK-GRTLRLRVKEMDREKNKVILSQKDVLDEELETKKQET 197

Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGY 588
              + +G  + G V  +T     V +   G   G +    +A  H+EHA+    V+K G 
Sbjct: 198 ISKLSVGQELMGTVQRLTQFGAFVDI---GGVDGLVHISEMAWHHVEHAS---EVVKEGD 251

Query: 589 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFV 645
           +   Q+L LD  +  + LS     I + Q  P ++  + I+   +V G V  +++ G F+
Sbjct: 252 QVRVQVLKLDPANERISLS-----IKATQPGPWESVKNKINIGDIVTGTVKRLVQFGAFI 306

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
                + G    S+      A   +    GQ V+  +LD+N    RI+LS+K++
Sbjct: 307 EVAPGVEGLVHISQIAHRHIATPFEVLKEGQEVQVKVLDMNPGEKRISLSIKET 360



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 1318 SRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
            S   SQ E + N++ +  GDIV G++ +V++    + +      G+  V ELS   +DN 
Sbjct: 13   SAEVSQEESMANVTIIKKGDIVTGKVIKVDADQAVVDV-GYKYDGIVSVRELSSVQLDNA 71

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            E I + G+++++K+L +D  K ++ L  ++
Sbjct: 72   EEIVQVGQEIELKVLTIDDNKEKLVLSKRA 101



 Score = 41.2 bits (95), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 304 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 363
             V IS++A   V    +  KEG  VRV++L         +  +KA+         + + 
Sbjct: 228 GLVHISEMAWHHVEHASEVVKEGDQVRVQVLKLDPANERISLSIKATQPGPWESVKNKIN 287

Query: 364 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 423
            G +V G V  +  FGA ++   GV+ L  +  ++   I  P +  K G E+  +VL + 
Sbjct: 288 IGDIVTGTVKRLVQFGAFIEVAPGVEGLVHISQIAHRHIATPFEVLKEGQEVQVKVLDMN 347

Query: 424 --SKRITVTHKKT 434
              KRI+++ K+T
Sbjct: 348 PGEKRISLSIKET 360


>gi|319943161|ref|ZP_08017444.1| 30S ribosomal protein S1 [Lautropia mirabilis ATCC 51599]
 gi|319743703|gb|EFV96107.1| 30S ribosomal protein S1 [Lautropia mirabilis ATCC 51599]
          Length = 583

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 183/423 (43%), Gaps = 73/423 (17%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1085
            G  V G V  + +  A + +   +   L I D A+     P+E+        +G+ +T  
Sbjct: 215  GAVVQGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPTEV------LQVGQEITAK 267

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISN---DNMQTFIHEGDIVGGRISKILSGVGG 1142
            VL  ++EK  + L ++   +   D  V IS     N + F        G+++ I     G
Sbjct: 268  VLKFDQEKNRVSLGIKQLGE---DPWVGISRRYPQNTRMF--------GKVTNITDY--G 314

Query: 1143 LVVQIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
              V+I P + G VH +E+    KN+  S  +S  DE              V+  VLEI  
Sbjct: 315  AFVEIEPGIEGLVHVSEMDWTNKNVNPSKVVSLGDE--------------VEVMVLEIDE 360

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
              R         R SL GM  T+++        P +     E+   N  V+G +K++T  
Sbjct: 361  DRR---------RISL-GMKQTHAN--------PWQEFS--ENHRRNDRVKGSIKSITDF 400

Query: 1259 GCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
            G FI L   +D  V LS+LS +   E   ++F  G  V   VL ++   +R+ + +K  +
Sbjct: 401  GVFIGLPGGIDGLVHLSDLSWNKSGEEAVRDFKKGDEVEAVVLGIDVERERISLGIKQLE 460

Query: 1318 SRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
                      N ++ H  G +V G +  V++ G  I IE   + G    SE+S D V++ 
Sbjct: 461  G-----DPFTNFASTHDKGSVVTGTVTSVDARGATIQIE-PEVEGYLRASEISRDRVEDA 514

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNR 1436
             T    G  V+  I+ +D++ R I+L +K+    + AD +Q  +E  +      +G+  R
Sbjct: 515  RTHLSEGATVESMIINIDRKNRSIALSIKARENADTADAMQRMAESSAVSGTTNLGALLR 574

Query: 1437 SSL 1439
            + L
Sbjct: 575  AKL 577



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 93/172 (54%), Gaps = 9/172 (5%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            +E L+   +VQG VKN+T  G F+ L   +D  + +++++   V  P +   +G+ +  +
Sbjct: 209  LETLTEGAVVQGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPTEVLQVGQEITAK 267

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI-VIGQIKRVESYGLFITIENT 1357
            VL  +    RV + +K        +     +S  +  +  + G++  +  YG F+ IE  
Sbjct: 268  VLKFDQEKNRVSLGIK-----QLGEDPWVGISRRYPQNTRMFGKVTNITDYGAFVEIE-P 321

Query: 1358 NLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1408
             + GL HVSE+   + + N   +   G++V+V +L++D+++RRISLGMK ++
Sbjct: 322  GIEGLVHVSEMDWTNKNVNPSKVVSLGDEVEVMVLEIDEDRRRISLGMKQTH 373



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 122/540 (22%), Positives = 218/540 (40%), Gaps = 108/540 (20%)

Query: 56  GQLVSCIVLQLDDD------KKEIGKR-KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 108
           G  VS  +  L+D        ++  KR   W+ L L+L    L   TV      T  VK 
Sbjct: 88  GDFVSVAIDSLEDGFGETRLSRDRAKRLAAWVQLELALESGDLVTGTV------TGKVKG 141

Query: 109 IEDHGYILHFGLPSFT----GFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRT 156
                     GL   T     FLP       S ID +P        G  L+  V  +DR 
Sbjct: 142 ----------GLTVMTNGIRAFLP------GSLIDTRPVKDTTPYEGKTLEFKVIKLDRR 185

Query: 157 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 216
           R  V LS     V +    + +   ++ L  G +V   V++I + G  +       G +D
Sbjct: 186 RNNVVLSRR--AVIELSQGEERAKLLETLTEGAVVQGVVKNITDYGAFVDL-----GGID 238

Query: 217 -IFHLQNTFPTTNWKNDYNQH------KKVNARILFVDPTSRAVGLTL-----NPYLLHN 264
            + H+ +      W+   +        +++ A++L  D     V L +     +P++  +
Sbjct: 239 GLLHITDMA----WRRVRHPTEVLQVGQEITAKVLKFDQEKNRVSLGIKQLGEDPWVGIS 294

Query: 265 RAPPSHV----KVGDIYDQSKVVRVDRGL-GLL----LDIPSTPVSTPAYVTISDVAEEE 315
           R  P +     KV +I D    V ++ G+ GL+    +D  +  V+    V++ D  E  
Sbjct: 295 RRYPQNTRMFGKVTNITDYGAFVEIEPGIEGLVHVSEMDWTNKNVNPSKVVSLGDEVEVM 354

Query: 316 VRKLEKKYKEGSCVRVRI-LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 374
           V ++++        R RI LG +           A+ ++     H   +    VKG + +
Sbjct: 355 VLEIDED-------RRRISLGMKQTH--------ANPWQEFSENH---RRNDRVKGSIKS 396

Query: 375 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVLG--VKSKRIT 428
           +  FG  +  PGG+  L    H+S+    K G    + FK G E+   VLG  V+ +RI+
Sbjct: 397 ITDFGVFIGLPGGIDGLV---HLSDLSWNKSGEEAVRDFKKGDEVEAVVLGIDVERERIS 453

Query: 429 VTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 487
           +  K+     +    +++A   D+  +  G +T ++  G  ++    V+G+   SE+  D
Sbjct: 454 LGIKQL----EGDPFTNFASTHDKGSVVTGTVTSVDARGATIQIEPEVEGYLRASEISRD 509

Query: 488 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG--SLVSGVVDV 545
              +  +    G  V+  I++    +R I LS   +    + D + ++   S VSG  ++
Sbjct: 510 RVEDARTHLSEGATVESMIINIDRKNRSIALSIKARENADTADAMQRMAESSAVSGTTNL 569


>gi|336426345|ref|ZP_08606355.1| hypothetical protein HMPREF0994_02361 [Lachnospiraceae bacterium
            3_1_57FAA_CT1]
 gi|336010780|gb|EGN40760.1| hypothetical protein HMPREF0994_02361 [Lachnospiraceae bacterium
            3_1_57FAA_CT1]
          Length = 390

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 94/170 (55%), Gaps = 8/170 (4%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E +E +    +V+G VKNVT  G FI L    D  + +S +S G VE P+K F +G  V 
Sbjct: 186  ELLERIHEGDVVEGTVKNVTDFGAFIDLG-GADGLLHISEMSWGRVEHPKKVFKVGDQVT 244

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
             ++  +     ++ +++K  D+        N      VG++V G++ R+  +G F+ +E 
Sbjct: 245  VQIKEIN--GNKIALSMKFDDANPWK----NAAEKYAVGNVVTGKVARMTDFGAFVELE- 297

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
              +  L HVS+++++HVD    + + GE++  K++  ++E ++ISL +K+
Sbjct: 298  PGIDALLHVSQIAKEHVDKPSDVLKTGEEINAKVVDFNEEDKKISLSIKA 347



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 4/159 (2%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +  G VV+G V  V  FGA +   GG   L  +  MS   +  P K FKVG ++  ++  
Sbjct: 191 IHEGDVVEGTVKNVTDFGAFIDL-GGADGLLHISEMSWGRVEHPKKVFKVGDQVTVQIKE 249

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           +   +I ++ K             YA      +  G + ++   G FV    G+      
Sbjct: 250 INGNKIALSMKFDDANPWKNAAEKYAVGN---VVTGKVARMTDFGAFVELEPGIDALLHV 306

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           S++  +   +PS +   G+ +  +++      ++I+LS 
Sbjct: 307 SQIAKEHVDKPSDVLKTGEEINAKVVDFNEEDKKISLSI 345



 Score = 44.7 bits (104), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 41/192 (21%)

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           IH   VV G V N+ + G F+  LG   G    S+   G+     K + VG  V   I +
Sbjct: 191 IHEGDVVEGTVKNVTDFGAFID-LGGADGLLHISEMSWGRVEHPKKVFKVGDQVTVQIKE 249

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIG 741
           +N    +I LS+K    +                               W    E + +G
Sbjct: 250 ING--NKIALSMKFDDANP------------------------------WKNAAEKYAVG 277

Query: 742 SVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKA 796
           +V+ GKV    DFG  V  E   D    ++     H       +++G  I A ++D  + 
Sbjct: 278 NVVTGKVARMTDFGAFVELEPGIDALLHVSQIAKEHVDKPSDVLKTGEEINAKVVDFNEE 337

Query: 797 ERLVDLSLKTVF 808
           ++ + LS+K + 
Sbjct: 338 DKKISLSIKAML 349


>gi|156348524|ref|XP_001621880.1| hypothetical protein NEMVEDRAFT_v1g143336 [Nematostella vectensis]
 gi|156208203|gb|EDO29780.1| predicted protein [Nematostella vectensis]
          Length = 135

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 10/129 (7%)

Query: 367 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA--------ELVFR 418
           +++G +I ++ FG +V     +K L    H+++  +  P KK   G             +
Sbjct: 7   ILQGTIITLEKFGMLVSVSDHIKGLVTNMHLADIILKHPEKKLTEGKVVNKRLINPFTLQ 66

Query: 419 VLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
           VL V    +R+ +THKKT+V S L +++ Y++A     +HG+IT + ++GC V FYN V+
Sbjct: 67  VLTVDPGQRRLHLTHKKTMVSSILQVITQYSDAKPGTTSHGFITSVREYGCLVTFYNNVK 126

Query: 477 GFAPRSELG 485
           G  P+ +LG
Sbjct: 127 GLVPKDQLG 135



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 13/108 (12%)

Query: 562 KGTIPTEHLADHL---------EHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 611
           KG +   HLAD +         E   V K +I P   F  Q+L +D     L L+ K ++
Sbjct: 29  KGLVTNMHLADIILKHPEKKLTEGKVVNKRLINP---FTLQVLTVDPGQRRLHLTHKKTM 85

Query: 612 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
           ++S  Q+ +  S   P +  HG++ ++ E GC V F   + G  P+ +
Sbjct: 86  VSSILQVITQYSDAKPGTTSHGFITSVREYGCLVTFYNNVKGLVPKDQ 133


>gi|345014360|ref|YP_004816714.1| RNA binding S1 domain-containing protein [Streptomyces violaceusniger
            Tu 4113]
 gi|344040709|gb|AEM86434.1| RNA binding S1 domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 504

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-G 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|384208505|ref|YP_005594225.1| 30S ribosomal protein S1 [Brachyspira intermedia PWS/A]
 gi|343386155|gb|AEM21645.1| 30S ribosomal protein S1 [Brachyspira intermedia PWS/A]
          Length = 568

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 148/339 (43%), Gaps = 17/339 (5%)

Query: 367 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSK 425
           ++ GKV  ++ FGA V+   G      +P+MS  +++ P      G E +F+VL + K  
Sbjct: 208 IINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFKVLHIDKEN 267

Query: 426 RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 485
           R      K L +             D  +  G +T ++K G FV+  +G++G    S+L 
Sbjct: 268 RKVDLGIKQLDEDPWGKFVEQYHIDD--VIQGEVTNVKKFGAFVKVADGIEGLVHVSDLS 325

Query: 486 LDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSG 541
            +     P+     G  ++C+I+    A R++ L        P    E D   + S V  
Sbjct: 326 WNSHVNNPNDFVKKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVEKDF-PVKSAVKC 384

Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNES 600
            V  +  N   V+ +  G  +G        D   +   MK  +K G E + +++ +D + 
Sbjct: 385 KVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVNMKDYVKEGEEVNMVIMSIDRDK 441

Query: 601 SNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659
             + LS K++  +S  +L   A   HP  S+V G V  I+++G  +     L G+   S+
Sbjct: 442 QRIKLSYKHTK-DSPWRLFEKA---HPQGSIVDGTVKAIVDSGAIISLEDDLEGYMHVSQ 497

Query: 660 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
               + + L +   VG++    + +VN    RI+LS ++
Sbjct: 498 VEIPKGSTLEEVLKVGETYPFVVREVNQSKRRISLSRRE 536



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            + +L  N I+ G VKN+   G F+ ++   D  + + N+S   V +P+     G+    +
Sbjct: 200  LNNLQENDIINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFK 259

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VL ++  +++V++ +K  D     +     +   H+ D++ G++  V+ +G F+ + +  
Sbjct: 260  VLHIDKENRKVDLGIKQLDEDPWGKF----VEQYHIDDVIQGEVTNVKKFGAFVKVAD-G 314

Query: 1359 LVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 315  IEGLVHVSDLSWNSHVNNPNDFVKKGAFLECKILDMNAAERKLTLGLK 362



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 138/300 (46%), Gaps = 49/300 (16%)

Query: 1116 NDNMQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            N  ++TF++   E DI+ G++  I     G  V+I P   G   F  + N+     ++  
Sbjct: 193  NAGIETFLNNLQENDIINGKVKNIEKF--GAFVEITPGFDG---FLAIPNMSWDKVIN-- 245

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
                  P S   +G+    KVL I +  R    V+L ++                D D  
Sbjct: 246  ------PKSIISKGEERMFKVLHIDKENR---KVDLGIKQ--------------LDEDPW 282

Query: 1233 GKHLEK--IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEF 1289
            GK +E+  I+D     ++QG V NV   G F+ ++  ++  V +S+LS + +V +P    
Sbjct: 283  GKFVEQYHIDD-----VIQGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPNDFV 337

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESY 1348
              G  +  ++L +    +++ + LK          E     +  V   V  ++KR+ +++
Sbjct: 338  KKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVE----KDFPVKSAVKCKVKRIIKNF 393

Query: 1349 GLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             +F  + N  L G+C +S+    +++ N++   + GE+V + I+ +D++K+RI L  K +
Sbjct: 394  AVF-ELPN-GLEGICDISDFDWRNNIVNMKDYVKEGEEVNMVIMSIDRDKQRIKLSYKHT 451



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 116/575 (20%), Positives = 217/575 (37%), Gaps = 88/575 (15%)

Query: 428 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITK-----IEKHGCFVRFYNGVQGFAPRS 482
           T+   K L   ++    +  E+ +  ++ G I K      +    F+ F +  +G   RS
Sbjct: 9   TMEDNKNLSNDEIEFRKALEESDNTFLSRGKIVKGKVVQFDDTDVFIDFDSKSEGKIKRS 68

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---DDLVKLGSLV 539
           E   +P         +G+ ++  I+S       + LS      R S+   D+ VK  + +
Sbjct: 69  EFDKEP--------TIGEEIEA-IVSGEDDKGYVILSKSEIDKRKSQELIDNAVKNNTAI 119

Query: 540 SGVV-DVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFDQLLVL 596
           +GVV +VV  ++ V      G+    +  +       ++ A  +K     G EF +  V+
Sbjct: 120 TGVVKEVVRSDSKVA-----GFKVSIMGHQAFCPFSQIDLAKGIKESDYIGKEF-EFRVI 173

Query: 597 DNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
                ++++S +  L+   Q   + +  +++  N +++G V NI + G FV       GF
Sbjct: 174 KKNGRDVVVSRRV-LLEETQNAGIETFLNNLQENDIINGKVKNIEKFGAFVEITPGFDGF 232

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 714
                    +  +       G+     +L ++ E  ++ L +KQ               L
Sbjct: 233 LAIPNMSWDKVINPKSIISKGEERMFKVLHIDKENRKVDLGIKQ---------------L 277

Query: 715 LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYG 768
            E+               K+VE + I  VI+G+V     FG  V   +      H     
Sbjct: 278 DEDPWG------------KFVEQYHIDDVIQGEVTNVKKFGAFVKVADGIEGLVHVSDLS 325

Query: 769 FITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 828
           + +H       V+ G+ ++  ILD+  AER + L LK V               K+    
Sbjct: 326 WNSHVNNPNDFVKKGAFLECKILDMNAAERKLTLGLKQV---------------KENPWD 370

Query: 829 EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN-GQSV 887
              KD  V   V   V+ + +N+ V  LP     I   S  D+       K ++  G+ V
Sbjct: 371 TVEKDFPVKSAVKCKVKRIIKNFAVFELPNGLEGICDISDFDWRNNIVNMKDYVKEGEEV 430

Query: 888 IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL 947
              +M++       +L       S   T  S     + ++  GS+V   +  I      +
Sbjct: 431 NMVIMSIDRDKQRIKL-------SYKHTKDSPWRLFEKAHPQGSIVDGTVKAIVDSGAII 483

Query: 948 KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 982
                  G +H+++V   K + +E +    K+G+T
Sbjct: 484 SLEDDLEGYMHVSQVEIPKGSTLEEV---LKVGET 515



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 142/357 (39%), Gaps = 54/357 (15%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +VKGKV+  D     + F    +        SEF+     K+  +G E+   V G   
Sbjct: 38  GKIVKGKVVQFDDTDVFIDFDSKSEGKI---KRSEFD-----KEPTIGEEIEAIVSGEDD 89

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN----GVQGFAP 480
           K   +  K  + K K   L   A   +  IT G + ++ +    V  +     G Q F P
Sbjct: 90  KGYVILSKSEIDKRKSQELIDNAVKNNTAIT-GVVKEVVRSDSKVAGFKVSIMGHQAFCP 148

Query: 481 RSELGLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLG 536
            S++ L  G + S   ++G+  + R++      +  SRR+ L         +  + ++  
Sbjct: 149 FSQIDLAKGIKESD--YIGKEFEFRVIKKNGRDVVVSRRVLLEETQNAGIETFLNNLQEN 206

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLV 595
            +++G V  +      V  I  G+  G +   +++   +     KS+I  G E   ++L 
Sbjct: 207 DIINGKVKNIEKFGAFVE-ITPGFD-GFLAIPNMS--WDKVINPKSIISKGEERMFKVLH 262

Query: 596 LDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           +D E+  + L  K        QL  D         H + V+ G V N+ + G FV+    
Sbjct: 263 IDKENRKVDLGIK--------QLDEDPWGKFVEQYHIDDVIQGEVTNVKKFGAFVKVADG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 698
           + G    S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 315 IEGLVHVS--------DLSWNSHVNNPNDFVKKGAFLECKILDMNAAERKLTLGLKQ 363


>gi|357634293|ref|ZP_09132171.1| ribosomal protein S1 [Desulfovibrio sp. FW1012B]
 gi|357582847|gb|EHJ48180.1| ribosomal protein S1 [Desulfovibrio sp. FW1012B]
          Length = 576

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 150/348 (43%), Gaps = 34/348 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G  V G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQTVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ 266

Query: 425 --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +++++  K+ +      I   Y E T RL   G +T +  +G FV    GV+G    S
Sbjct: 267 DKQKVSLGMKQLVADPWENIAGKYPEDT-RL--SGKVTNLVDYGAFVELEAGVEGLVHIS 323

Query: 483 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 537
           E+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V      G+
Sbjct: 324 EMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--MKQVRPNPWDIVAEKYPEGT 381

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 591
           ++ G V  +T   + +     G   G     H++D     +  K V  PG  F       
Sbjct: 382 VLEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKSGDTVM 432

Query: 592 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 649
            ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGAMVKGTVTNITDFGLFVEVEE 488

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 489 GIEGLVHVSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 8/162 (4%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1305
            +++G VKN+T  G FI +   +D  + +S++S    V  P + F  G  V  +VL+V+  
Sbjct: 382  VLEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDTVMAKVLTVDKE 441

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
            +++  + +K       S+     + + + VG +V G +  +  +GLF+ +E   + GL H
Sbjct: 442  NEKFTLGIKQ-----LSEDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEE-GIEGLVH 495

Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            VSE+S   V     +Y+ G++++ K++ V  ++RR+ L +KS
Sbjct: 496  VSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIKS 537



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 9/166 (5%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L     V G VKN+T  G F+ L   LD  + ++++S   ++ P++   +G  +  +VLS
Sbjct: 205  LEEGQTVTGRVKNITEYGVFVDLG-GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI-GQIKRVESYGLFITIENTNLV 1360
             +   ++V + +K      A   E  N++  +  D  + G++  +  YG F+ +E   + 
Sbjct: 264  FDQDKQKVSLGMK---QLVADPWE--NIAGKYPEDTRLSGKVTNLVDYGAFVELE-AGVE 317

Query: 1361 GLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            GL H+SE+S    + +   +   G++V+V +L VD +K+RISLGMK
Sbjct: 318  GLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMK 363



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 6/123 (4%)

Query: 1285 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQI 1342
            P+ +  +G+    RVL +      V V+ +    + R + + ++  L  L  G  V G++
Sbjct: 158  PDMDALVGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL--LKTLEEGQTVTGRV 215

Query: 1343 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
            K +  YG+F+ +    L GL H++++S   + + + +   G+++++K+L  D++K+++SL
Sbjct: 216  KNITEYGVFVDL--GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSL 273

Query: 1403 GMK 1405
            GMK
Sbjct: 274  GMK 276



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 153/391 (39%), Gaps = 83/391 (21%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--- 507
           D +IT   + +I+  G +     GV+ F P S + L P  +  ++  VGQ  + R++   
Sbjct: 121 DDVITGRIVRRIK--GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKIN 176

Query: 508 ---SSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV-------- 553
              S++  SRR+ L       R    DL+K    G  V+G V  +T   V V        
Sbjct: 177 RRRSNVIVSRRVLLEERRDSMR---KDLLKTLEEGQTVTGRVKNITEYGVFVDLGGLDGL 233

Query: 554 -YVIAKGYSKGTIPTE--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 610
            ++    + +   P E  HL D LE                ++L  D +   + L  K  
Sbjct: 234 MHITDMSWKRIKHPKELVHLGDELEL---------------KVLSFDQDKQKVSLGMKQL 278

Query: 611 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLS 669
           + +  + +   A     ++ + G V N+++ G FV     + G    S+    ++    S
Sbjct: 279 VADPWENI---AGKYPEDTRLSGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPS 335

Query: 670 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 729
           +  +VG  V   +L V+ +  RI+L +KQ   +  D        ++ EK           
Sbjct: 336 QMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWD--------IVAEK----------- 376

Query: 730 SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVE 781
                   +  G+V+EG V    +FG+ +  E+  D  G I    ++        G   +
Sbjct: 377 --------YPEGTVLEGSVKNITEFGIFIGIEDGID--GLIHVSDISWTKKVRHPGEMFK 426

Query: 782 SGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
           SG  + A +L V K      L +K +  D +
Sbjct: 427 SGDTVMAKVLTVDKENEKFTLGIKQLSEDPW 457



 Score = 48.9 bits (115), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 168/390 (43%), Gaps = 47/390 (12%)

Query: 55  VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG  +T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQTVTGRVKNITEYG 222

Query: 114 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS-----S 164
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLGMKQLVA 280

Query: 165 DP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 223
           DP + ++    +D +            +S +V ++++ G  +       G V I  +  T
Sbjct: 281 DPWENIAGKYPEDTR------------LSGKVTNLVDYGAFVELEAGVEGLVHISEMSWT 328

Query: 224 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIY 277
               +     +   +V   +L VDP  + + L +     NP+ ++  + P   V  G + 
Sbjct: 329 RKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTVLEGSVK 388

Query: 278 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF 336
           + ++        G+ + I          + +SD++  ++VR   + +K G  V  ++L  
Sbjct: 389 NITE-------FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKSGDTVMAKVLTV 438

Query: 337 -RHLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPL 394
            +  E    GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +
Sbjct: 439 DKENEKFTLGIKQLS--EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHV 496

Query: 395 PHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
             +S  ++  P + +K G E+  +V+ V +
Sbjct: 497 SEISRKKVKTPAELYKEGDEIEAKVIHVSA 526



 Score = 44.3 bits (103), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 85/451 (18%), Positives = 174/451 (38%), Gaps = 80/451 (17%)

Query: 554 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 613
           Y +  G  +  +P  H+   L     M +++   +EF ++L ++   SN+++S +  L  
Sbjct: 136 YTVDLGGVEAFLPGSHV--DLRPVPDMDALVGQEFEF-RVLKINRRRSNVIVSRRVLLEE 192

Query: 614 SAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 672
               +  D    +     V G V NI E G FV  LG L G    +     +     +  
Sbjct: 193 RRDSMRKDLLKTLEEGQTVTGRVKNITEYGVFVD-LGGLDGLMHITDMSWKRIKHPKELV 251

Query: 673 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 732
           ++G  +   +L  + +  +++L +KQ                  E IA            
Sbjct: 252 HLGDELELKVLSFDQDKQKVSLGMKQLVADPW------------ENIAG----------- 288

Query: 733 KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGS 784
           K+ E     + + GKV    D+G  V  E  + V G +   +++           V  G 
Sbjct: 289 KYPED----TRLSGKVTNLVDYGAFVELE--AGVEGLVHISEMSWTRKLRHPSQMVHVGD 342

Query: 785 VIQAAILDVAKAERLVDLSLKTV-------FIDRFREANSNRQAQKKKRKREASKDLGVH 837
            ++  +L V   ++ + L +K V         +++ E      + K     E    +G+ 
Sbjct: 343 EVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTVLEGSVKNIT--EFGIFIGIE 400

Query: 838 QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSS 897
             ++ ++ +                   + +S     + P + F +G +V+A V+ +   
Sbjct: 401 DGIDGLIHV-------------------SDISWTKKVRHPGEMFKSGDTVMAKVLTVDKE 441

Query: 898 STAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 957
           +   +  L +K +SE   +     +   +Y VG++V+  +T I    L ++   G  G +
Sbjct: 442 NE--KFTLGIKQLSEDPWT-----RVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLV 494

Query: 958 HITEVNDDKSNVVENLFSNFKIGQTVTARII 988
           H++E++  K      L   +K G  + A++I
Sbjct: 495 HVSEISRKKVKTPAEL---YKEGDEIEAKVI 522


>gi|296125740|ref|YP_003632992.1| RNA binding S1 domain-containing protein [Brachyspira murdochii DSM
           12563]
 gi|296017556|gb|ADG70793.1| RNA binding S1 domain protein [Brachyspira murdochii DSM 12563]
          Length = 554

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 155/347 (44%), Gaps = 19/347 (5%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           +++K   ++ GKV  ++ FGA ++   G      +P+MS  +++ P      G E +F+V
Sbjct: 187 NNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFKV 246

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L +  ++K++ +  K+         +  Y       +  G +T ++K G FV+  +G++G
Sbjct: 247 LHIDKENKKVDLGIKQLDEDPWGKFVEQYHIGD---VIQGEVTNVKKFGAFVKVADGIEG 303

Query: 478 FAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 533
               S+L  +     PS     G  ++C+I+    A R++ L        P    E D  
Sbjct: 304 LVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVEKDF- 362

Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 593
            + S V   V  +  N   V+ +  G  +G        D   +   MK  IK G + + +
Sbjct: 363 PVKSAVKCKVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVNMKDYIKEGEDVNMV 419

Query: 594 LV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRL 651
           ++ +D +   + LS K++   S  +L   A   HP  S+V G V  I+++G  V     L
Sbjct: 420 IMSIDRDKQRIKLSYKHTK-ESPWRLFEKA---HPQGSIVDGTVKAIVDSGAIVALEDDL 475

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            G+   S+    + + L +   VG++    + +VN    RI+LS ++
Sbjct: 476 EGYMHVSQVEIPKGSTLEEVVKVGETYPFVVREVNQSKRRISLSRRE 522



 Score = 76.3 bits (186), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 93/168 (55%), Gaps = 6/168 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            + +L  N I+ G VKN+   G FI ++   D  + + N+S   V +P+     G+    +
Sbjct: 186  LNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFK 245

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VL ++  +K+V++ +K  D     +     +   H+GD++ G++  V+ +G F+ + +  
Sbjct: 246  VLHIDKENKKVDLGIKQLDEDPWGKF----VEQYHIGDVIQGEVTNVKKFGAFVKVAD-G 300

Query: 1359 LVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  IEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLK 348



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 110/540 (20%), Positives = 203/540 (37%), Gaps = 80/540 (14%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP--GCEPSSMYHVGQVVKCRIMSSIP 511
           I  G + + +    F+ F +  +G   R+E   +P  G E  ++          I+S   
Sbjct: 31  IIKGKVVQFDDTDVFIDFESKSEGKIKRNEFDKEPIIGEEIEAIVSGEDDKGYVILSKSE 90

Query: 512 ASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 571
             +R +   +        D+ VK  S V+GVV  V      V ++     +   P   + 
Sbjct: 91  IDKRKSQELI--------DNAVKNNSTVTGVVKEVIKGGFKVSIMG---HQAFCPFSQI- 138

Query: 572 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNS 629
              + A  +K     G E+ +  V+     ++++S + +L+   Q   + S  +++  N 
Sbjct: 139 ---DIARGIKETDYIGNEY-EFRVIKKNGRDVVVSRR-ALLEETQNASIESFLNNLKEND 193

Query: 630 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
           +++G V NI + G F+       GF         +  +       G+     +L ++ E 
Sbjct: 194 IINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVINPKSIISKGEERMFKVLHIDKEN 253

Query: 690 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 749
            ++ L +KQ               L E+               K+VE + IG VI+G+V 
Sbjct: 254 KKVDLGIKQ---------------LDEDPWG------------KFVEQYHIGDVIQGEVT 286

Query: 750 ESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
               FG  V   +      H     + +H       V+ G+ ++  ILD+  AER + L 
Sbjct: 287 NVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLG 346

Query: 804 LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 863
           LK V               K+       KD  V   V   V+ + +N+ V  LP     I
Sbjct: 347 LKQV---------------KENPWDTVEKDFPVKSAVKCKVKRIIKNFAVFELPNGLEGI 391

Query: 864 GYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 922
              S  D+       K ++  G+ V   +M++       R+ L  K   E+     ++A 
Sbjct: 392 CDISDFDWRNNIVNMKDYIKEGEDVNMVIMSIDRDKQ--RIKLSYKHTKESPWRLFEKAH 449

Query: 923 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 982
            +     GS+V   +  I      +       G +H+++V   K + +E +    K+G+T
Sbjct: 450 PQ-----GSIVDGTVKAIVDSGAIVALEDDLEGYMHVSQVEIPKGSTLEEV---VKVGET 501



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 137/300 (45%), Gaps = 49/300 (16%)

Query: 1116 NDNMQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            N ++++F++   E DI+ G++  I     G  ++I P   G   F  + N+     +   
Sbjct: 179  NASIESFLNNLKENDIINGKVKNIEKF--GAFIEITPGFDG---FLAIPNMSWDKVI--- 230

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
                 +P S   +G+    KVL I +  +    V+L ++                D D  
Sbjct: 231  -----NPKSIISKGEERMFKVLHIDKENK---KVDLGIKQ--------------LDEDPW 268

Query: 1233 GKHLEK--IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEF 1289
            GK +E+  I D     ++QG V NV   G F+ ++  ++  V +S+LS + +V +P    
Sbjct: 269  GKFVEQYHIGD-----VIQGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFV 323

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESY 1348
              G  +  ++L +    +++ + LK          E     +  V   V  ++KR+ +++
Sbjct: 324  KKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVE----KDFPVKSAVKCKVKRIIKNF 379

Query: 1349 GLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             +F  + N  L G+C +S+    +++ N++   + GE V + I+ +D++K+RI L  K +
Sbjct: 380  AVF-ELPN-GLEGICDISDFDWRNNIVNMKDYIKEGEDVNMVIMSIDRDKQRIKLSYKHT 437



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 140/353 (39%), Gaps = 51/353 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G ++KGKV+  D     + F    +        +EF+     K+  +G E+   V G   
Sbjct: 29  GKIIKGKVVQFDDTDVFIDFESKSEGKI---KRNEFD-----KEPIIGEEIEAIVSGEDD 80

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
           K   +  K  + K K   L   A   +  +T G + ++ K G  V    G Q F P S++
Sbjct: 81  KGYVILSKSEIDKRKSQELIDNAVKNNSTVT-GVVKEVIKGGFKVSIM-GHQAFCPFSQI 138

Query: 485 GLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 540
            +  G + +   ++G   + R++      +  SRR  L      +  S  + +K   +++
Sbjct: 139 DIARGIKETD--YIGNEYEFRVIKKNGRDVVVSRRALLEETQNASIESFLNNLKENDIIN 196

Query: 541 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLVLDNE 599
           G V  +      +  I  G+  G +   +++   +     KS+I  G E   ++L +D E
Sbjct: 197 GKVKNIEKFGAFIE-ITPGFD-GFLAIPNMS--WDKVINPKSIISKGEERMFKVLHIDKE 252

Query: 600 SSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
           +  + L  K        QL  D         H   V+ G V N+ + G FV+    + G 
Sbjct: 253 NKKVDLGIK--------QLDEDPWGKFVEQYHIGDVIQGEVTNVKKFGAFVKVADGIEGL 304

Query: 655 APRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 698
              S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 305 VHVS--------DLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQ 349



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 135/322 (41%), Gaps = 48/322 (14%)

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL I+KE K + L ++   +    K V+          H GD++ G ++ +     G  V
Sbjct: 246  VLHIDKENKKVDLGIKQLDEDPWGKFVEQ--------YHIGDVIQGEVTNVKKF--GAFV 295

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
            ++   + G VH ++L           ++    +P     +G F++CK+L+++   R    
Sbjct: 296  KVADGIEGLVHVSDL----------SWNSHVNNPSDFVKKGAFLECKILDMNAAER---- 341

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
             +L+L     G+            + P   +EK  D      V+  VK +        L 
Sbjct: 342  -KLTL-----GLKQVK--------ENPWDTVEK--DFPVKSAVKCKVKRIIKNFAVFELP 385

Query: 1266 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
              L+    +S+      + + +     G+ V   ++S++   +R++++ K +      +S
Sbjct: 386  NGLEGICDISDFDWRNNIVNMKDYIKEGEDVNMVIMSIDRDKQRIKLSYKHT-----KES 440

Query: 1325 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                    H  G IV G +K +   G  + +E+ +L G  HVS++       +E + + G
Sbjct: 441  PWRLFEKAHPQGSIVDGTVKAIVDSGAIVALED-DLEGYMHVSQVEIPKGSTLEEVVKVG 499

Query: 1384 EKVKVKILKVDKEKRRISLGMK 1405
            E     + +V++ KRRISL  +
Sbjct: 500  ETYPFVVREVNQSKRRISLSRR 521


>gi|423625417|ref|ZP_17601195.1| ribosomal protein S1 [Bacillus cereus VD148]
 gi|401255097|gb|EJR61322.1| ribosomal protein S1 [Bacillus cereus VD148]
          Length = 382

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQGKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     S Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFSDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 29/356 (8%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQGKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 529
           +GF P S + +    E  S Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFSDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 587
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDIVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 644
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
           V  L  + G    S+  +    + ++   +GQ V+  +L+V+    RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAL 346


>gi|325971203|ref|YP_004247394.1| RNA binding S1 domain-containing protein [Sphaerochaeta globus str.
            Buddy]
 gi|324026441|gb|ADY13200.1| RNA binding S1 domain protein [Sphaerochaeta globus str. Buddy]
          Length = 571

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 171/379 (45%), Gaps = 58/379 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            GQ V G V +V+NE+  + +    + ++             EF     +G+ V   V+ I
Sbjct: 32   GQLVAGTVVQVNNEYVFVDVGYKSEGRI----------SRDEFASIPEVGEEV--KVVII 79

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1149
            NKE K  ++V+   +    ++T     D ++        + G+  K++ G  G  V +G 
Sbjct: 80   NKEGKGGQIVVSKKRADFKERT-----DELKAASENRSPILGKFEKVIKG--GFEVDLGG 132

Query: 1150 HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1209
               G    ++   + V +P +      +  +  +  G  +K  V               +
Sbjct: 133  EYKGFCPLSKADVVRVEEPETLIGVTDYFIIDKFHGGTKLKSVV---------------N 177

Query: 1210 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1269
             R  LD     N     + V        +I D     +V+G VK+ TS G FI L    D
Sbjct: 178  RREYLDQKIKENKEKFFSTV--------QIGD-----VVEGVVKSFTSFGAFIDLG-GFD 223

Query: 1270 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEIN 1327
              + ++++S G+V  P+     G++V  R+++++P ++++ ++LK    D  T  + + N
Sbjct: 224  GLLHINDMSWGHVTRPKDFVKKGQVVQLRLINIDPETQKINLSLKHMQEDPWTTFEQKYN 283

Query: 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKV 1386
                  VGD +   + ++ ++G FI IE   + GL H+SELS    V+N + +   G+ V
Sbjct: 284  ------VGDTIKAPVTKITTFGAFIEIE-PGIEGLAHISELSWTKRVNNPKEVLDVGDVV 336

Query: 1387 KVKILKVDKEKRRISLGMK 1405
            + K+L  D +K+R+SLG+K
Sbjct: 337  EAKVLGYDLDKKRVSLGLK 355



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 150/358 (41%), Gaps = 29/358 (8%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S V+ G VV+G V +  SFGA +   GG   L  +  MS   + +P    K G  +  R+
Sbjct: 195 STVQIGDVVEGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQVVQLRL 253

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           + +  ++++I ++ K  + +             D +     +TKI   G F+    G++G
Sbjct: 254 INIDPETQKINLSLKH-MQEDPWTTFEQKYNVGDTI--KAPVTKITTFGAFIEIEPGIEG 310

Query: 478 FAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 533
            A  SEL        P  +  VG VV+ +++      +R++L        P     D   
Sbjct: 311 LAHISELSWTKRVNNPKEVLDVGDVVEAKVLGYDLDKKRVSLGLKQLEENPWDTIVDRYP 370

Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 593
              +L   VV +    A V         +G     H+ D +     +K++     E D +
Sbjct: 371 VGMTLSKPVVKITNSGAFV------NLEEGIDGFLHI-DDISWTKKVKNMASFCAEGDVI 423

Query: 594 LVLDN----ESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFL 648
            V+      E+  + L  K    N  Q L     H +P  S + G + N+ + G FV+ +
Sbjct: 424 EVVVIRVEPENRRIRLGVKQLEGNPWQTL----RHDYPKFSTISGVITNVTDFGVFVKVI 479

Query: 649 GRLTGFAPRSKAV--DGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           G + G   +   V  D +  D + K + VG+ + + +++ N  T +++LS+K+    S
Sbjct: 480 GDIEGLISKYNLVGPDEEYTDEILKKFVVGEPITAMVVECNPTTQKLSLSVKEMVKRS 537


>gi|302546255|ref|ZP_07298597.1| ribosomal protein S1 [Streptomyces hygroscopicus ATCC 53653]
 gi|302463873|gb|EFL26966.1| ribosomal protein S1 [Streptomyces himastatinicus ATCC 53653]
          Length = 502

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|410465315|ref|ZP_11318650.1| ribosomal protein S1 [Desulfovibrio magneticus str. Maddingley
           MBC34]
 gi|409981573|gb|EKO38122.1| ribosomal protein S1 [Desulfovibrio magneticus str. Maddingley
           MBC34]
          Length = 576

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 150/348 (43%), Gaps = 34/348 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G  V G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQTVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ 266

Query: 425 --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
             +++++  K+ +      I   Y E T R+   G +T +  +G FV    GV+G    S
Sbjct: 267 DKQKVSLGMKQLIADPWENIAGKYPEDT-RM--SGKVTNLVDYGAFVELEPGVEGLVHIS 323

Query: 483 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 537
           E+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V      G+
Sbjct: 324 EMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--MKQVRPNPWDIVAEKYPEGT 381

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 591
           ++ G V  +T   + +     G   G     H++D     +  K V  PG  F       
Sbjct: 382 ILEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKSGDIVM 432

Query: 592 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 649
            ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGAMVKGTVTNITDFGLFVEVEE 488

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 489 GIEGLVHVSEISRKKVKTPAEIYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 63/385 (16%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1085
            GQ VTG V  +  E+ +      L   + I D +++    P EL       H+G  +   
Sbjct: 208  GQTVTGRVKNI-TEYGVFVDLGGLDGLMHITDMSWKRIKHPKEL------VHLGDELELK 260

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VLS +++K+ + L ++     I+D       +N+     E   + G+++ ++    G  V
Sbjct: 261  VLSFDQDKQKVSLGMKQL---IADPW-----ENIAGKYPEDTRMSGKVTNLVDY--GAFV 310

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
            ++ P + G VH +E+           +      P      G  V+  VL +    +    
Sbjct: 311  ELEPGVEGLVHISEMS----------WTRKLRHPSQMVHVGDEVEVVVLSVDPDKK---- 356

Query: 1206 VELSLRSSLDGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1263
                 R SL GM     N  D+              E      I++G VKN+T  G FI 
Sbjct: 357  -----RISL-GMKQVRPNPWDIVA------------EKYPEGTILEGSVKNITEFGIFIG 398

Query: 1264 LSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
            +   +D  + +S++S    V  P + F  G +V  +VL+V+  +++  + +K       S
Sbjct: 399  IEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKENEKFTLGIKQ-----LS 453

Query: 1323 QSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1381
            +     + + + VG +V G +  +  +GLF+ +E   + GL HVSE+S   V     IY+
Sbjct: 454  EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEE-GIEGLVHVSEISRKKVKTPAEIYK 512

Query: 1382 AGEKVKVKILKVDKEKRRISLGMKS 1406
             G++++ K++ V  ++RR+ L +KS
Sbjct: 513  EGDEIEAKVIHVSADERRLGLSIKS 537



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 9/166 (5%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L     V G VKN+T  G F+ L   LD  + ++++S   ++ P++   +G  +  +VLS
Sbjct: 205  LEEGQTVTGRVKNITEYGVFVDLG-GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLS 263

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI-GQIKRVESYGLFITIENTNLV 1360
             +   ++V + +K      A   E  N++  +  D  + G++  +  YG F+ +E   + 
Sbjct: 264  FDQDKQKVSLGMK---QLIADPWE--NIAGKYPEDTRMSGKVTNLVDYGAFVELE-PGVE 317

Query: 1361 GLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            GL H+SE+S    + +   +   G++V+V +L VD +K+RISLGMK
Sbjct: 318  GLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMK 363



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 6/123 (4%)

Query: 1285 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQI 1342
            P+ +  +G+    RVL +      V V+ +    + R + + ++  L  L  G  V G++
Sbjct: 158  PDMDALVGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL--LKTLEEGQTVTGRV 215

Query: 1343 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
            K +  YG+F+ +    L GL H++++S   + + + +   G+++++K+L  D++K+++SL
Sbjct: 216  KNITEYGVFVDL--GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSL 273

Query: 1403 GMK 1405
            GMK
Sbjct: 274  GMK 276



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 138/367 (37%), Gaps = 77/367 (20%)

Query: 466 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 519
           G +     GV+ F P S + L P  +  ++  VGQ  + R++      S++  SRR+ L 
Sbjct: 134 GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKINRRRSNVIVSRRVLLE 191

Query: 520 FMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPT 567
                 R    DL+K    G  V+G V  +T   V V         ++    + +   P 
Sbjct: 192 ERRDSMR---KDLLKTLEEGQTVTGRVKNITEYGVFVDLGGLDGLMHITDMSWKRIKHPK 248

Query: 568 E--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 625
           E  HL D LE                ++L  D +   + L  K  + +  + +   A   
Sbjct: 249 ELVHLGDELEL---------------KVLSFDQDKQKVSLGMKQLIADPWENI---AGKY 290

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILD 684
             ++ + G V N+++ G FV     + G    S+    ++    S+  +VG  V   +L 
Sbjct: 291 PEDTRMSGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLS 350

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  RI+L +KQ   +  D                              E +  G+++
Sbjct: 351 VDPDKKRISLGMKQVRPNPWDIV---------------------------AEKYPEGTIL 383

Query: 745 EGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 798
           EG V    +FG+ +  E+      H     +    +  G   +SG ++ A +L V K   
Sbjct: 384 EGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKENE 443

Query: 799 LVDLSLK 805
              L +K
Sbjct: 444 KFTLGIK 450



 Score = 47.8 bits (112), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 168/390 (43%), Gaps = 47/390 (12%)

Query: 55  VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG  +T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQTVTGRVKNITEYG 222

Query: 114 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLS-----S 164
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLGMKQLIA 280

Query: 165 DP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 223
           DP + ++    +D +            +S +V ++++ G  +       G V I  +  T
Sbjct: 281 DPWENIAGKYPEDTR------------MSGKVTNLVDYGAFVELEPGVEGLVHISEMSWT 328

Query: 224 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIY 277
               +     +   +V   +L VDP  + + L +     NP+ ++  + P   +  G + 
Sbjct: 329 RKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTILEGSVK 388

Query: 278 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF 336
           + ++        G+ + I          + +SD++  ++VR   + +K G  V  ++L  
Sbjct: 389 NITE-------FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTV 438

Query: 337 -RHLEGLATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPL 394
            +  E    GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +
Sbjct: 439 DKENEKFTLGIKQLS--EDPWTRVPDTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHV 496

Query: 395 PHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
             +S  ++  P + +K G E+  +V+ V +
Sbjct: 497 SEISRKKVKTPAEIYKEGDEIEAKVIHVSA 526


>gi|229166441|ref|ZP_04294197.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
 gi|228617015|gb|EEK74084.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
          Length = 382

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVNVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 130/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       V  KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VNVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|440702750|ref|ZP_20883876.1| 30S ribosomal protein S1 [Streptomyces turgidiscabies Car8]
 gi|440275576|gb|ELP63980.1| 30S ribosomal protein S1 [Streptomyces turgidiscabies Car8]
          Length = 501

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 187/417 (44%), Gaps = 66/417 (15%)

Query: 1003 ELSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH---- 1052
            E++     + V++IG +  F    D +I     G  V G + KVD +  LL I       
Sbjct: 6    EITATTPQVAVNDIGDEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGV 65

Query: 1053 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1112
            + ++   +    +P+E+        +G  +   VL   KE K  RL+L   +        
Sbjct: 66   IPSRELSIKHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQY 112

Query: 1113 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            + +   ++    E  IV G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGK 170

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDT 1231
            +               ++ K++E+ +      +V LS R+ L+   S    + L+T    
Sbjct: 171  E---------------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT---- 208

Query: 1232 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1291
                      L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +
Sbjct: 209  ----------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEV 257

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGL 1350
            G+ V   VL V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G 
Sbjct: 258  GQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGA 312

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            F+ ++   + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 313  FVRVDE-GIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|374990744|ref|YP_004966239.1| 30S ribosomal protein S1 [Streptomyces bingchenggensis BCW-1]
 gi|297161396|gb|ADI11108.1| 30S ribosomal protein S1 [Streptomyces bingchenggensis BCW-1]
          Length = 500

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-G 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|302528116|ref|ZP_07280458.1| ribosomal protein S1 [Streptomyces sp. AA4]
 gi|302437011|gb|EFL08827.1| ribosomal protein S1 [Streptomyces sp. AA4]
          Length = 497

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 184/408 (45%), Gaps = 64/408 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 18   VAVNDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 77

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 78   KHDVDPAEV------VAVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 124

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                + + V G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 125  ELKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE------- 175

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1240
                    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 176  --------LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF-------------LN 211

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
             L+   + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 212  ALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 270

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1359
             V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   +
Sbjct: 271  DVDMDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GI 324

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL H+SEL+E HV+  E + +    V VK++ +D E+RRISL +K +
Sbjct: 325  EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQA 372



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 52/369 (14%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++  
Sbjct: 41  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQK 100

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 101 EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP 156

Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 157 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 212

Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 213 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 271

Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 272 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 304

Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAILDVAKA 796
            GKV +   FG  V  EE   + G +   +LA   VE        +G V+   ++D+   
Sbjct: 305 PGKVTKLVPFGAFVRVEE--GIEGLVHISELAERHVEIPEQVVQVNGDVM-VKVIDIDLE 361

Query: 797 ERLVDLSLK 805
            R + LSLK
Sbjct: 362 RRRISLSLK 370



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 31/353 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKED 102

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
            G    S+  +       +   V   V   ++D++ E  RI+LSLKQ+    T
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVT 377


>gi|440776925|ref|ZP_20955754.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            S5]
 gi|436722913|gb|ELP46799.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            S5]
          Length = 435

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 126/268 (47%), Gaps = 39/268 (14%)

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            GGL++ IG   +      E++ +    P  G +               ++ K++E+ +  
Sbjct: 91   GGLILDIGLRGFLPASLVEMRRVRDLQPYIGKE---------------IEAKIIELDKN- 134

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                +V LS R+ L+   S   S+              +  L    I +G V ++ + G 
Sbjct: 135  --RNNVVLSRRAWLEQTQSEVRSEF-------------LNQLQKGAIRKGVVSSIVNFGA 179

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +    
Sbjct: 180  FVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKAT---- 234

Query: 1321 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
              +    + +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +
Sbjct: 235  -QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQV 292

Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKSS 1407
               G+   VK++ +D E+RRISL +K +
Sbjct: 293  VAVGDDAMVKVIDIDLERRRISLSLKQA 320



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 161 LQKGAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 219

Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T          ++A      I  G +TK+   G FVR   G++G  
Sbjct: 220 VDMDRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLV 276

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL       P  +  VG     +++      RRI+LS 
Sbjct: 277 HISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSL 317



 Score = 43.9 bits (102), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 138/346 (39%), Gaps = 58/346 (16%)

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDL 532
           +G  P  EL +    +P+ +  VG  V+  +++      R+ LS      +    + + L
Sbjct: 15  EGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEAL 74

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKP--GY 588
            +    V G V  V    +++ +  +G+   ++              M+ V  ++P  G 
Sbjct: 75  KEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL------------VEMRRVRDLQPYIGK 122

Query: 589 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVR 646
           E + +++ LD   +N++LS +  L  +  ++ S+  + +   ++  G V +I+  G FV 
Sbjct: 123 EIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVD 182

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            LG + G    S+         S+   VG  V   +LDV+ +  R++LSLK +       
Sbjct: 183 -LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLK-ATQEDPWR 240

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
            F + H                           IG ++ GKV +   FG  V  EE   +
Sbjct: 241 HFARTH--------------------------AIGQIVPGKVTKLVPFGAFVRVEE--GI 272

Query: 767 YGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLK 805
            G +   +LA   VE        G      ++D+    R + LSLK
Sbjct: 273 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLK 318



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 140/330 (42%), Gaps = 31/330 (9%)

Query: 389 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSY 446
           + + P   +S    V P +   VG E+   VL  + K  R+ ++ K+   +     + + 
Sbjct: 15  EGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEAL 74

Query: 447 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKC 504
            E  + +   G + ++ K G  +    G++GF P S  E+      +P    ++G+ ++ 
Sbjct: 75  KEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPASLVEMRRVRDLQP----YIGKEIEA 126

Query: 505 RIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
           +I+      +++  SRR  L       R    + ++ G++  GVV  +      V +   
Sbjct: 127 KIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDL--- 183

Query: 559 GYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 616
           G   G +    L+  H++H +    V++ G E   ++L +D +   + LS K +  +  +
Sbjct: 184 GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWR 240

Query: 617 QLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 675
                 +  H    +V G V  ++  G FVR    + G    S+  +       +   VG
Sbjct: 241 HF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVG 296

Query: 676 QSVRSNILDVNSETGRITLSLKQSCCSSTD 705
                 ++D++ E  RI+LSLKQ+    T+
Sbjct: 297 DDAMVKVIDIDLERRRISLSLKQANEDYTE 326


>gi|78355554|ref|YP_387003.1| 30S ribosomal protein S1 [Desulfovibrio alaskensis G20]
 gi|78217959|gb|ABB37308.1| ribosomal protein S1 [Desulfovibrio alaskensis G20]
          Length = 574

 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 157/349 (44%), Gaps = 34/349 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G +V GK   +  +G  V   GG+  L  +  MS   I  P +   +G EL  ++L    
Sbjct: 205 GQIVTGKAKNITEYGVFVDL-GGLDGLLHITDMSWKRIRHPKELVSLGQELELKILSFDR 263

Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
            S+++++  K+ +      I S Y E   RL  +G +T +  +G FV    GV+G    S
Sbjct: 264 DSQKVSLGMKQLVNDPWADITSKYPENA-RL--NGKVTNLVDYGAFVELEPGVEGLVHIS 320

Query: 483 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL----GS 537
           E+        PS M  VG  V+  I+   P  +RI+L   MK  + +  ++V      G+
Sbjct: 321 EMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLG--MKQVKPNPWEVVAEKYPEGT 378

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 591
           ++ GV+  +T   + +     G   G     H++D     +  K +  P   ++      
Sbjct: 379 ILEGVIKNITEFGMFI-----GIEDGIDGLIHVSD----ISWTKKIRHPNELYNVGDTVQ 429

Query: 592 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 649
            ++L +D ES    L  K    +   ++P++    +P  ++V+G V NI + G FV    
Sbjct: 430 AKVLTVDQESEKFTLGVKQLTEDPWSKVPAN----YPVGTLVNGVVTNITDFGLFVEVEE 485

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
            + G    S+    +    S+ +  G ++++ ++ V++E  R+ LS+KQ
Sbjct: 486 GIEGLVHVSEISQKKVKSPSEMFKEGVTIQAKVIHVSAEERRLGLSIKQ 534



 Score = 73.2 bits (178), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 88/160 (55%), Gaps = 6/160 (3%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1305
            I++G +KN+T  G FI +   +D  + +S++S    +  P + + +G  V  +VL+V+  
Sbjct: 379  ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELYNVGDTVQAKVLTVDQE 438

Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
            S++  + +K       S+      +N  VG +V G +  +  +GLF+ +E   + GL HV
Sbjct: 439  SEKFTLGVKQLTEDPWSKVP----ANYPVGTLVNGVVTNITDFGLFVEVEE-GIEGLVHV 493

Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            SE+S+  V +   +++ G  ++ K++ V  E+RR+ L +K
Sbjct: 494  SEISQKKVKSPSEMFKEGVTIQAKVIHVSAEERRLGLSIK 533



 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 11/175 (6%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  + ++ L    IV G  KN+T  G F+ L   LD  + ++++S   +  P++   +G+
Sbjct: 194  KRQDLLKTLEEGQIVTGKAKNITEYGVFVDLG-GLDGLLHITDMSWKRIRHPKELVSLGQ 252

Query: 1294 LVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
             +  ++LS +  S++V + +K   +D      S+    + L+      G++  +  YG F
Sbjct: 253  ELELKILSFDRDSQKVSLGMKQLVNDPWADITSKYPENARLN------GKVTNLVDYGAF 306

Query: 1352 ITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + +E   + GL H+SE+S    + +   + R G++V+V IL VD +K+RISLGMK
Sbjct: 307  VELE-PGVEGLVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLGMK 360



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 140/615 (22%), Positives = 240/615 (39%), Gaps = 110/615 (17%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQF----PGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
            D++ G +VKG+V+ VD    +V       G + A       SEF+  +     KVG  +
Sbjct: 29  GDLEEGSIVKGEVVRVDGDYVLVDVNFKSEGQIAA-------SEFKDAEGNLAIKVGDTV 81

Query: 416 VFRVLGVKSKRITVT-----HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 470
              V        T+T      K+  V  KL  +   +E T    T G I +  K G  V 
Sbjct: 82  DVFVARKNEMEGTITLSFEKAKRMQVFDKLEEVQE-SEGT----TCGRIIRRIKGGYTVD 136

Query: 471 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKP 524
              GV+ F P S + L P  +  ++  V Q    R++      S++  SRR+ L      
Sbjct: 137 L-GGVEAFLPGSHVDLRPVPDMDAL--VNQEFDFRVLKINRRRSNVIVSRRVLLEEERDS 193

Query: 525 TRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHA 577
            R    DL+K    G +V+G    +T   V V +   G   G +   H+ D     + H 
Sbjct: 194 KR---QDLLKTLEEGQIVTGKAKNITEYGVFVDL---GGLDGLL---HITDMSWKRIRHP 244

Query: 578 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYV 635
              K ++  G E + ++L  D +S  + L  K  L+N      +D +  +P N+ ++G V
Sbjct: 245 ---KELVSLGQELELKILSFDRDSQKVSLGMK-QLVNDPW---ADITSKYPENARLNGKV 297

Query: 636 CNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITL 694
            N+++ G FV     + G    S+    ++    S+   VG  V   IL V+ +  RI+L
Sbjct: 298 TNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISL 357

Query: 695 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 754
            +KQ                           K N  E+   E +  G+++EG +    +F
Sbjct: 358 GMKQ--------------------------VKPNPWEVV-AEKYPEGTILEGVIKNITEF 390

Query: 755 GVVVSFEEHSDVYGFITHHQLAGAT--------VESGSVIQAAILDVAKAERLVDLSLKT 806
           G+ +  E+  D  G I    ++              G  +QA +L V +      L +K 
Sbjct: 391 GMFIGIEDGID--GLIHVSDISWTKKIRHPNELYNVGDTVQAKVLTVDQESEKFTLGVKQ 448

Query: 807 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
           +  D + +  +N                 V   VN +V  + +  L + + E    + + 
Sbjct: 449 LTEDPWSKVPANYP---------------VGTLVNGVVTNITDFGLFVEVEEGIEGLVHV 493

Query: 867 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 926
           S       K P + F  G ++ A V+ +  S+   RL L +K I + E     +  +   
Sbjct: 494 SEISQKKVKSPSEMFKEGVTIQAKVIHV--SAEERRLGLSIKQIKDDEERRRPKEFRSGP 551

Query: 927 YDVGSLVQAEITEIK 941
            + G     +I ++K
Sbjct: 552 AEAGGQTLGDILKLK 566



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 89/445 (20%), Positives = 176/445 (39%), Gaps = 68/445 (15%)

Query: 554 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 613
           Y +  G  +  +P  H+   L     M +++   ++F ++L ++   SN+++S +  L  
Sbjct: 133 YTVDLGGVEAFLPGSHV--DLRPVPDMDALVNQEFDF-RVLKINRRRSNVIVSRRVLLEE 189

Query: 614 SAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 672
                  D    +    +V G   NI E G FV  LG L G    +     +     +  
Sbjct: 190 ERDSKRQDLLKTLEEGQIVTGKAKNITEYGVFVD-LGGLDGLLHITDMSWKRIRHPKELV 248

Query: 673 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 732
            +GQ +   IL  + ++ +++L +KQ               L+ +  A + S     + L
Sbjct: 249 SLGQELELKILSFDRDSQKVSLGMKQ---------------LVNDPWADITSKYPENARL 293

Query: 733 KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGS 784
                        GKV    D+G  V  E    V G +   +++           V  G 
Sbjct: 294 N------------GKVTNLVDYGAFVELE--PGVEGLVHISEMSWTRKLRHPSQMVRVGD 339

Query: 785 VIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 844
            ++  IL V   ++ + L +K V          N      ++  E +        +  ++
Sbjct: 340 EVEVVILGVDPDKKRISLGMKQV--------KPNPWEVVAEKYPEGT-------ILEGVI 384

Query: 845 EIVKENYLVLSLPE-YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 903
           + + E  + + + +  +  I  + +S     + P + +  G +V A V+ +   S   + 
Sbjct: 385 KNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELYNVGDTVQAKVLTVDQESE--KF 442

Query: 904 LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 963
            L +K ++E   S     K  ++Y VG+LV   +T I    L ++   G  G +H++E++
Sbjct: 443 TLGVKQLTEDPWS-----KVPANYPVGTLVNGVVTNITDFGLFVEVEEGIEGLVHVSEIS 497

Query: 964 DDKSNVVENLFSNFKIGQTVTARII 988
             K   V++    FK G T+ A++I
Sbjct: 498 QKK---VKSPSEMFKEGVTIQAKVI 519


>gi|315652055|ref|ZP_07905056.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
            [Lachnoanaerobaculum saburreum DSM 3986]
 gi|315485702|gb|EFU76083.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
            [Lachnoanaerobaculum saburreum DSM 3986]
          Length = 368

 Score = 81.3 bits (199), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 166/355 (46%), Gaps = 34/355 (9%)

Query: 1069 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1125
            L E  +  H G+ V G V+ + +++ +L +  +   DGI  ++ + SNDN   ++T +H 
Sbjct: 10   LDESFKTLHTGEVVNGKVIDVKEDQIILNVGFK--SDGIITRS-EYSNDNNLDLRTVVHV 66

Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
            GD +  ++ KI  G G +++        R       N  + D  +  +      +   D 
Sbjct: 67   GDEMEAKVLKINDGEGQVLLSYKKLAQDR------GNKKLEDAFNNKEVLTGKVVQVVDG 120

Query: 1186 GQFV---KCKVLEISRTVRGTFHVELSLRSSLD---GMSSTNSSDLSTDVDTPGKHLEKI 1239
            G  V     +V   +  V  TF  +LS     D    ++  N        D     L K 
Sbjct: 121  GLSVVVDDARVFIPASLVSDTFERDLSKYKDTDIEFVITEFNPRRRRIIGDRKQLLLAKK 180

Query: 1240 ED--------LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1291
            E+        ++P  +++G VKNVT  G F+ L    D  + +S +S G VE+P+K F  
Sbjct: 181  EEQKKALFDKITPGDVIEGTVKNVTDFGAFVDLG-GADGLLHISEMSWGRVENPKKVFKS 239

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
            G+ V   +  +    +++ +++K  D      +E         G++V G++ R+  +G F
Sbjct: 240  GEKVTAFIKDIS--GEKIALSMKFPDQNPWLDAE----EKFARGNVVKGRVARMTDFGAF 293

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            + I N  +  L HVS++S DHV+    + + G++V+  I++ ++ +++ISL +K+
Sbjct: 294  VEISN-GVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPEKKISLSIKA 347



 Score = 62.0 bits (149), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 19/245 (7%)

Query: 281 KVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRIL 334
           KVV+V D GL +++D     V  PA + +SD  E ++ K     +E    E +  R RI+
Sbjct: 113 KVVQVVDGGLSVVVD--DARVFIPASL-VSDTFERDLSKYKDTDIEFVITEFNPRRRRII 169

Query: 335 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 394
           G R        +L A   E        + PG V++G V  V  FGA V   GG   L  +
Sbjct: 170 GDRKQ------LLLAKKEEQKKALFDKITPGDVIEGTVKNVTDFGAFVDL-GGADGLLHI 222

Query: 395 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 454
             MS   +  P K FK G ++   +  +  ++I ++ K       L     +A      +
Sbjct: 223 SEMSWGRVENPKKVFKSGEKVTAFIKDISGEKIALSMKFPDQNPWLDAEEKFARGN---V 279

Query: 455 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 514
             G + ++   G FV   NGV      S++  D   +PS +  VG  V+  I+      +
Sbjct: 280 VKGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPEK 339

Query: 515 RINLS 519
           +I+LS
Sbjct: 340 KISLS 344



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 139/346 (40%), Gaps = 57/346 (16%)

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDDL 532
           G   RSE   D   +  ++ HVG  ++ +++       ++ LS+      +  +  ED  
Sbjct: 45  GIITRSEYSNDNNLDLRTVVHVGDEMEAKVLKINDGEGQVLLSYKKLAQDRGNKKLEDAF 104

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH------ATVMKSVIKP 586
                L   VV VV     VV   A+ +    IP   ++D  E        T ++ VI  
Sbjct: 105 NNKEVLTGKVVQVVDGGLSVVVDDARVF----IPASLVSDTFERDLSKYKDTDIEFVITE 160

Query: 587 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
                + ++ D +   LLL+ K       +Q  +    I P  V+ G V N+ + G FV 
Sbjct: 161 FNPRRRRIIGDRKQ--LLLAKK------EEQKKALFDKITPGDVIEGTVKNVTDFGAFVD 212

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            LG   G    S+   G+  +  K +  G+ V + I D++ E  +I LS+K         
Sbjct: 213 -LGGADGLLHISEMSWGRVENPKKVFKSGEKVTAFIKDISGE--KIALSMK--------- 260

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
            F  ++  L+ +                 E F  G+V++G+V    DFG  V      D 
Sbjct: 261 -FPDQNPWLDAE-----------------EKFARGNVVKGRVARMTDFGAFVEISNGVDA 302

Query: 767 YGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 807
              ++     H +     ++ G  ++A I++  + E+ + LS+K +
Sbjct: 303 LLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPEKKISLSIKAL 348


>gi|42780699|ref|NP_977946.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
 gi|3122814|sp|O06000.1|RS1H_BACC1 RecName: Full=30S ribosomal protein S1 homolog
 gi|2094771|emb|CAA70584.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
 gi|42736619|gb|AAS40554.1| ribosomal protein S1 [Bacillus cereus ATCC 10987]
          Length = 382

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 105/201 (52%), Gaps = 6/201 (2%)

Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
             +++   K  E I  L    +V+G V+ +T  G F+ +   +D  V +S +S   VE P 
Sbjct: 171  VELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQPS 229

Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1346
            +    G+ V  +VLSV+  ++R+ +++K +          N    +  GDI  G +KR+ 
Sbjct: 230  EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NIAGEVKAGDIREGIVKRLV 285

Query: 1347 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            ++G F+ I    + GL HVS+++  HV N   +   G++VKVK+L+V   ++RISL +K 
Sbjct: 286  TFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKE 344

Query: 1407 SYFKNDADNLQMSSEEESDEA 1427
            ++ +N+        E  +D A
Sbjct: 345  AFEENNVTEDYSQYEPNADSA 365



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
            GK +A +++ ++    RV ++ K          +   +S+L  GD+V G ++R+  +G F
Sbjct: 146  GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAF 205

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +   +  GL H+S++S + V+    +   G+KVKVK+L VD + +RISL +K++
Sbjct: 206  VNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAA 259



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENIAGEVKAGD--IREGIVKRLVTFGAFVEILPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 530
               S++       P+ +  +GQ VK +++    A +RI+LS     +   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAFEENNVTED 354



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  IAGEVKAGDIREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEAFEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|317486319|ref|ZP_07945150.1| ribosomal protein S1 [Bilophila wadsworthia 3_1_6]
 gi|316922430|gb|EFV43685.1| ribosomal protein S1 [Bilophila wadsworthia 3_1_6]
          Length = 570

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 25/195 (12%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1305
            I++G +KN+T  G FI +   +D  + +S++S    +  P + F +G  V  +VL+V+  
Sbjct: 378  ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNELFKVGDTVQAKVLTVDQE 437

Query: 1306 SKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
            S++  + +K  T D  T      N  +   VG +V G I  +  +GLF+ +E   + GL 
Sbjct: 438  SEKFTLGIKQLTEDPWT------NVPTAYPVGGLVKGIITNITDFGLFVEVEE-GIEGLV 490

Query: 1364 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1423
            HVSELS   V     +Y+ GE+++ KI+ V  E RR+ L +K           Q+  EEE
Sbjct: 491  HVSELSNKKVKTPAELYKEGEEIQAKIIHVSAEDRRLGLSIK-----------QLKDEEE 539

Query: 1424 SDEAIEEVGSYNRSS 1438
              +  E    Y+RS 
Sbjct: 540  RKKPRE----YSRSG 550



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  + ++ L+   +V G  KN+T  G F+ L   LD  + ++++S   +  P +   +G+
Sbjct: 193  KRQDLLQTLAEGQVVTGKAKNITEYGVFVDLG-GLDGLLHITDMSWKRIRHPREMVTLGQ 251

Query: 1294 LVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
             +  +VLS +  +++V + LK    D      +     S  +      G++  +  YG F
Sbjct: 252  DLELKVLSFDKDNQKVSLGLKQLVPDPWQDITARFPEASRHN------GKVTNLVDYGAF 305

Query: 1352 ITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            + +E   + GL H+SE+S    + +   + R G++V+V IL VD EK+RISLGMK 
Sbjct: 306  VELE-PGVEGLVHISEMSWTRKLRHPSQMVRQGDEVEVVILGVDPEKKRISLGMKQ 360



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 191/468 (40%), Gaps = 84/468 (17%)

Query: 92  SLETVQE--GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 149
            LE VQE  G++    ++ I+  GY +  G      FLP       S +D++P   +  +
Sbjct: 109 QLEDVQEKNGVIKGRIMRRIKG-GYTVDLG--GVEAFLP------GSHVDLRPVPDMDAL 159

Query: 150 VRS--------IDRTRKVVYLSS----DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 197
           V          I+R R  V +S     + +  SK   +DL    +  L  G +V+ + ++
Sbjct: 160 VNQEYEFRVLKINRRRSNVIVSRRVLLEEERDSK--RQDL----LQTLAEGQVVTGKAKN 213

Query: 198 ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA------RILFVDPTSR 251
           I E GV +       G   + H+ +     +WK   +  + V        ++L  D  ++
Sbjct: 214 ITEYGVFVDL----GGLDGLLHITDM----SWKRIRHPREMVTLGQDLELKVLSFDKDNQ 265

Query: 252 AVGLTL-----NPYL-LHNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 302
            V L L     +P+  +  R P +   + KV ++ D    V ++ G+             
Sbjct: 266 KVSLGLKQLVPDPWQDITARFPEASRHNGKVTNLVDYGAFVELEPGV------------- 312

Query: 303 PAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILKASAFEGLVFT 358
              V IS+++   ++R   +  ++G  V V ILG    +    L    +K + +E     
Sbjct: 313 EGLVHISEMSWTRKLRHPSQMVRQGDEVEVVILGVDPEKKRISLGMKQIKPNPWE---LV 369

Query: 359 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAE 414
                 G +++G +  +  FG  +    G+  L    H+S+    K    P + FKVG  
Sbjct: 370 GEKYPEGTILEGVIKNITEFGMFIGIEDGIDGLI---HVSDISWTKKIRHPNELFKVGDT 426

Query: 415 LVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 472
           +  +VL V  +S++ T+  K+        + ++Y       +  G IT I   G FV   
Sbjct: 427 VQAKVLTVDQESEKFTLGIKQLTEDPWTNVPTAYPVGG---LVKGIITNITDFGLFVEVE 483

Query: 473 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
            G++G    SEL       P+ +Y  G+ ++ +I+      RR+ LS 
Sbjct: 484 EGIEGLVHVSELSNKKVKTPAELYKEGEEIQAKIIHVSAEDRRLGLSI 531


>gi|166031925|ref|ZP_02234754.1| hypothetical protein DORFOR_01626 [Dorea formicigenerans ATCC 27755]
 gi|346306186|ref|ZP_08848348.1| hypothetical protein HMPREF9457_00057 [Dorea formicigenerans
            4_6_53AFAA]
 gi|166028378|gb|EDR47135.1| putative ribosomal protein S1 [Dorea formicigenerans ATCC 27755]
 gi|345905907|gb|EGX75642.1| hypothetical protein HMPREF9457_00057 [Dorea formicigenerans
            4_6_53AFAA]
          Length = 359

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 103/192 (53%), Gaps = 17/192 (8%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  E  E L     V+G VKNVT  G FI L   +D  + +S +S G VE+P+K F +G 
Sbjct: 183  KQKELFEKLHVGDTVEGVVKNVTDFGAFIDLG-GVDGLLHISEMSWGRVENPKKVFKVGD 241

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             +  +VL  +    ++ ++LK  +S   +    N   +  VG ++ G++ R+  +G F+ 
Sbjct: 242  EL--KVLVKDIHDTKIALSLKFPESNPWA----NAAEDYAVGTVITGKVARMTDFGAFVE 295

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1413
            +    +  L HVS++S+ HVD    + + GE+V  KI+ +++ +++ISL MK+       
Sbjct: 296  LA-PGVDALLHVSQISKAHVDKPSDVLKVGEEVTAKIVDLNEAEKKISLSMKA------- 347

Query: 1414 DNLQMSSEEESD 1425
              L+ + EE +D
Sbjct: 348  --LEAADEETAD 357



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 16/238 (6%)

Query: 288 GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK-----YKEGSCVRVRILGFRHLEGL 342
           G GL + +    V  PA + +SD  E+++ K + +       E +  R R++G R     
Sbjct: 119 GGGLSVVVDEARVFIPASL-VSDTYEKDLSKYQDQEIEFVISEFNPRRNRVIGDRR---- 173

Query: 343 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 402
              +L A   E        +  G  V+G V  V  FGA +   GGV  L  +  MS   +
Sbjct: 174 --QLLVAEKAEKQKELFEKLHVGDTVEGVVKNVTDFGAFIDL-GGVDGLLHISEMSWGRV 230

Query: 403 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 462
             P K FKVG EL   V  +   +I ++ K             YA  T   +  G + ++
Sbjct: 231 ENPKKVFKVGDELKVLVKDIHDTKIALSLKFPESNPWANAAEDYAVGT---VITGKVARM 287

Query: 463 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
              G FV    GV      S++      +PS +  VG+ V  +I+    A ++I+LS 
Sbjct: 288 TDFGAFVELAPGVDALLHVSQISKAHVDKPSDVLKVGEEVTAKIVDLNEAEKKISLSM 345



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV- 419
           D   G V+ GKV  +  FGA V+   GV AL  +  +S+  + KP    KVG E+  ++ 
Sbjct: 273 DYAVGTVITGKVARMTDFGAFVELAPGVDALLHVSQISKAHVDKPSDVLKVGEEVTAKIV 332

Query: 420 -LGVKSKRITVTHK 432
            L    K+I+++ K
Sbjct: 333 DLNEAEKKISLSMK 346


>gi|84515230|ref|ZP_01002592.1| 30S ribosomal protein S1 [Loktanella vestfoldensis SKA53]
 gi|84510513|gb|EAQ06968.1| 30S ribosomal protein S1 [Loktanella vestfoldensis SKA53]
          Length = 552

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 173/416 (41%), Gaps = 70/416 (16%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1085
            GQ V G V  +    A + +   +   L + D A+     PSE+        IG+ +   
Sbjct: 191  GQEVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEI------LAIGETIKVQ 243

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            V+ INKE   + L ++  Q+           D ++     G +  GR++ I     G  V
Sbjct: 244  VIKINKETHRISLGMKQLQED--------PWDAVEAKFSLGSVHQGRVTNITDY--GAFV 293

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
            ++   + G VH +E+           + +    P       Q V+  VLEI    R    
Sbjct: 294  ELEAGVEGLVHVSEMS----------WTKKNVHPGKIVSTSQEVEVMVLEIDSAKR---- 339

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
                 R SL G+  T  +      +T   H E  E       V+G VKN+T  G FI L 
Sbjct: 340  -----RVSL-GLKQTQRNPWEVFAET---HPEGTE-------VEGEVKNITEFGLFIGLE 383

Query: 1266 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
              +D  V LS+L+ DG  E    +F  G +V  +V  V+   +R+ +++K  DS   + +
Sbjct: 384  GDIDGMVHLSDLTWDGRGEDVIGDFRKGDMVKAKVAEVDVEKERISLSIKALDSDPFADA 443

Query: 1325 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  +  G I+  ++ ++E  G  I +E   +      S+LS D  +     + AG+
Sbjct: 444  ----IGGVKRGSIITVEVTKIEDGG--IEVEYEGMKSFIRRSDLSRDRAEQRPERFGAGD 497

Query: 1385 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1440
            KV V++  +D + R++ L +K+                E  EA+E+ GS +  + L
Sbjct: 498  KVDVRVTNIDSKTRKLGLSIKAREIA------------EEKEAVEQFGSSDSGASL 541



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 34/215 (15%)

Query: 1249 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR------VLSV 1302
            QG V N+T  G F+ L   ++  V +S +S       +K    GK+V+        VL +
Sbjct: 280  QGRVTNITDYGAFVELEAGVEGLVHVSEMS-----WTKKNVHPGKIVSTSQEVEVMVLEI 334

Query: 1303 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVG 1361
            +   +RV + LK +      ++     +  H  G  V G++K +  +GLFI +E  ++ G
Sbjct: 335  DSAKRRVSLGLKQT-----QRNPWEVFAETHPEGTEVEGEVKNITEFGLFIGLEG-DIDG 388

Query: 1362 LCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1420
            + H+S+L+ D   +++   +R G+ VK K+ +VD EK RISL +K+              
Sbjct: 389  MVHLSDLTWDGRGEDVIGDFRKGDMVKAKVAEVDVEKERISLSIKAL------------- 435

Query: 1421 EEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1455
              +SD   + +G   R S++      ++D  +E E
Sbjct: 436  --DSDPFADAIGGVKRGSIITVEVTKIEDGGIEVE 468



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 9/176 (5%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            +  E I +L+    V G VKN+T  G F+ L   +D  + +++++   V  P +   IG+
Sbjct: 180  QRAEVIGNLTEGQEVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEILAIGE 238

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             +  +V+ +   + R+ + +K          E    +   +G +  G++  +  YG F+ 
Sbjct: 239  TIKVQVIKINKETHRISLGMKQLQEDPWDAVE----AKFSLGSVHQGRVTNITDYGAFVE 294

Query: 1354 IENTNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL HVSE+S     N+    I    ++V+V +L++D  KRR+SLG+K +
Sbjct: 295  LE-AGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLGLKQT 348



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)

Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
            +SR   ++E+  + NL  G  V G +K +  YG F+ +   +  GL HV++++   V++ 
Sbjct: 175  ESRAEQRAEV--IGNLTEGQEVDGVVKNITEYGAFVDLGGVD--GLLHVTDMAWRRVNHP 230

Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              I   GE +KV+++K++KE  RISLGMK
Sbjct: 231  SEILAIGETIKVQVIKINKETHRISLGMK 259



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 149/349 (42%), Gaps = 49/349 (14%)

Query: 368 VKGKVIAVDSFGAIVQFPGG------VKALCPLPHMSE-FEIVKPGKKFKVGAELVFRVL 420
           VKG    VD  GA+   PG       V+   PL +M + F+I+K  ++         R  
Sbjct: 115 VKGG-FTVDLGGAVAFLPGSQVDVRPVRDAGPLMNMKQPFQILKMDRR---------RGN 164

Query: 421 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
            V S+R  +   +   + +  ++ +  E  +     G +  I ++G FV    GV G   
Sbjct: 165 IVVSRRAILEESRA--EQRAEVIGNLTEGQE---VDGVVKNITEYGAFVDL-GGVDGLLH 218

Query: 481 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LG 536
            +++       PS +  +G+ +K +++     + RI+L   MK  +    D V+    LG
Sbjct: 219 VTDMAWRRVNHPSEILAIGETIKVQVIKINKETHRISLG--MKQLQEDPWDAVEAKFSLG 276

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG-----YEFD 591
           S+  G V  +T     V + A          E L  H+   +  K  + PG      +  
Sbjct: 277 SVHQGRVTNITDYGAFVELEAG--------VEGLV-HVSEMSWTKKNVHPGKIVSTSQEV 327

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSV-VHGYVCNIIETGCFVRFLG 649
           +++VL+ +S+   +S     +   Q+ P +  +  HP    V G V NI E G F+   G
Sbjct: 328 EVMVLEIDSAKRRVSLG---LKQTQRNPWEVFAETHPEGTEVEGEVKNITEFGLFIGLEG 384

Query: 650 RLTGFAPRSKAV-DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
            + G    S    DG+  D+   +  G  V++ + +V+ E  RI+LS+K
Sbjct: 385 DIDGMVHLSDLTWDGRGEDVIGDFRKGDMVKAKVAEVDVEKERISLSIK 433



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 39/223 (17%)

Query: 592 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
           Q+L +D    N+++S +  L  S A+Q      ++     V G V NI E G FV  LG 
Sbjct: 154 QILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLTEGQEVDGVVKNITEYGAFVD-LGG 212

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    +     +    S+   +G++++  ++ +N ET RI+L +KQ            
Sbjct: 213 VDGLLHVTDMAWRRVNHPSEILAIGETIKVQVIKINKETHRISLGMKQ------------ 260

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 770
                      LQ    +  E K    F +GSV +G+V    D+G  V  E  + V G +
Sbjct: 261 -----------LQEDPWDAVEAK----FSLGSVHQGRVTNITDYGAFVELE--AGVEGLV 303

Query: 771 THHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLK 805
              +++        G  V +   ++  +L++  A+R V L LK
Sbjct: 304 HVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLGLK 346



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 97/471 (20%), Positives = 192/471 (40%), Gaps = 37/471 (7%)

Query: 85  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-NSGIDVKPG 143
           +LL +   ++T  EG V+   V +IE    I+  G     G +     A      D+K G
Sbjct: 6   ALLNESFEMDTPAEGSVVKGKVIAIEAGQAIIDVGY-KMEGRIDLKEFANPGEAPDIKVG 64

Query: 144 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS--ILEN 201
             ++  +R ++  R    +S +     +   +  K  + +  V G +   RV+    ++ 
Sbjct: 65  DTVEVFLRQVENARGEAVISREMARREEAWDRLEKAYADEERVDGAIFG-RVKGGFTVDL 123

Query: 202 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 261
           G  ++FL      VD+  +++  P  N K  +        +IL +D     + ++    L
Sbjct: 124 GGAVAFLP--GSQVDVRPVRDAGPLMNMKQPF--------QILKMDRRRGNIVVSRRAIL 173

Query: 262 LHNRAPPSHVKVGDIYDQSKVVRVDRGL---GLLLDIPSTPVSTPAYVTISDVAEEEVRK 318
             +RA      +G++ +  +V  V + +   G  +D+          + ++D+A   V  
Sbjct: 174 EESRAEQRAEVIGNLTEGQEVDGVVKNITEYGAFVDLGGVD----GLLHVTDMAWRRVNH 229

Query: 319 LEKKYKEGSCVRVRILGFR---HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 375
             +    G  ++V+++      H   L    L+   ++ +    +    G V +G+V  +
Sbjct: 230 PSEILAIGETIKVQVIKINKETHRISLGMKQLQEDPWDAV---EAKFSLGSVHQGRVTNI 286

Query: 376 DSFGAIVQFPGGVKALCPLPHMSEFEI-VKPGKKFKVGAELVFRVLGVKS--KRITVTHK 432
             +GA V+   GV+ L  +  MS  +  V PGK      E+   VL + S  +R+++  K
Sbjct: 287 TDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLGLK 346

Query: 433 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP-GCE 491
           +T          ++ E T+     G +  I + G F+     + G    S+L  D  G +
Sbjct: 347 QTQRNPWEVFAETHPEGTE---VEGEVKNITEFGLFIGLEGDIDGMVHLSDLTWDGRGED 403

Query: 492 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--VKLGSLVS 540
               +  G +VK ++        RI+LS     +    D +  VK GS+++
Sbjct: 404 VIGDFRKGDMVKAKVAEVDVEKERISLSIKALDSDPFADAIGGVKRGSIIT 454



 Score = 47.0 bits (110), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 110/488 (22%), Positives = 183/488 (37%), Gaps = 72/488 (14%)

Query: 352 FEGLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK- 407
           FE L+   F       G VVKGKVIA+++  AI+     ++    L      E   PG+ 
Sbjct: 4   FEALLNESFEMDTPAEGSVVKGKVIAIEAGQAIIDVGYKMEGRIDLK-----EFANPGEA 58

Query: 408 -KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 466
              KVG  +   +  V++ R      + + + + A         D     G I    K G
Sbjct: 59  PDIKVGDTVEVFLRQVENARGEAVISREMARREEAWDRLEKAYADEERVDGAIFGRVK-G 117

Query: 467 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMM 522
            F     G   F P S++ + P  +   + ++ Q  +     R   +I  SRR  L    
Sbjct: 118 GFTVDLGGAVAFLPGSQVDVRPVRDAGPLMNMKQPFQILKMDRRRGNIVVSRRAILEESR 177

Query: 523 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHAT 578
              R      +  G  V GVV  +T     V +   G   G +    +A    +H     
Sbjct: 178 AEQRAEVIGNLTEGQEVDGVVKNITEYGAFVDL---GGVDGLLHVTDMAWRRVNHPSEIL 234

Query: 579 VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVC 636
            +   IK      Q++ ++ E+  + L  K       Q+ P DA  +     SV  G V 
Sbjct: 235 AIGETIKV-----QVIKINKETHRISLGMK-----QLQEDPWDAVEAKFSLGSVHQGRVT 284

Query: 637 NIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
           NI + G FV     + G    S+ +   +     K     Q V   +L+++S   R++L 
Sbjct: 285 NITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLG 344

Query: 696 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 755
           LKQ+  +  +  F + H                G+E            +EG+V    +FG
Sbjct: 345 LKQTQRNPWEV-FAETH--------------PEGTE------------VEGEVKNITEFG 377

Query: 756 VVVSFEEHSDVYGFITHHQLA----GATV----ESGSVIQAAILDVAKAERLVDLSLKTV 807
           + +  E   D+ G +    L     G  V      G +++A + +V   +  + LS+K +
Sbjct: 378 LFIGLE--GDIDGMVHLSDLTWDGRGEDVIGDFRKGDMVKAKVAEVDVEKERISLSIKAL 435

Query: 808 FIDRFREA 815
             D F +A
Sbjct: 436 DSDPFADA 443


>gi|15618235|ref|NP_224520.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae CWL029]
 gi|15835850|ref|NP_300374.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae J138]
 gi|16752723|ref|NP_444990.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae AR39]
 gi|33241660|ref|NP_876601.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae TW-183]
 gi|6707741|sp|Q9Z8M3.1|RS1_CHLPN RecName: Full=30S ribosomal protein S1
 gi|4376592|gb|AAD18464.1| S1 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
 gi|7189364|gb|AAF38281.1| ribosomal protein S1 [Chlamydophila pneumoniae AR39]
 gi|8978689|dbj|BAA98525.1| S1 ribosomal protein [Chlamydophila pneumoniae J138]
 gi|33236169|gb|AAP98258.1| ribosomal protein S1 [Chlamydophila pneumoniae TW-183]
          Length = 580

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 73/401 (18%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            +SIG+   G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVLGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHISEMSWVKNIV-------------DPSEVVNKGDEVEAIVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTERN--------PWDNIE--EKYPIGLHVNAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K   S   ++ E    +    G ++ G + ++ ++G F+ ++N  + GL HVSELS+   
Sbjct: 462  KQLSSNPWNEIE----AMFPAGTVISGVVTKITAFGAFVELQN-GIEGLIHVSELSDKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
              IE I   GE V  K++K+D + +++SL +K     N  D
Sbjct: 517  AKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNAYD 557



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 141/296 (47%), Gaps = 43/296 (14%)

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
             EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y
Sbjct: 132  EEGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY 175

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
              G+  + K+L+I+   R   ++ +S R  L+    +  ++L             IE +S
Sbjct: 176  -VGKVCEFKILKINVERR---NIVVSRRELLEAERISKKAEL-------------IEQIS 218

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
                 +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+
Sbjct: 219  IGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVD 277

Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
                RV + LK  +       E         G  V+G+I ++  YG FI IE   + GL 
Sbjct: 278  KEKGRVALGLKQKEHNPWEDIE----KKYPPGKRVLGKIVKLLPYGAFIEIEE-GIEGLI 332

Query: 1364 HVSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            H+SE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +  +N  DN++
Sbjct: 333  HISEMSWVKNIVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTE-RNPWDNIE 386



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 422
           G+ V  ++  + ++GA V+   G++ L  +  MS  + V  P + FK G  +   +L V 
Sbjct: 392 GLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVD 451

Query: 423 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
            +SK+IT+  K+        I + +   T   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEAMFPAGT---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           SEL   P  +   +  +G+ V  +++   P  ++++LS
Sbjct: 509 SELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLS 546



 Score = 45.1 bits (105), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 140/350 (40%), Gaps = 32/350 (9%)

Query: 369 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 426
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGR 282

Query: 427 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 486
           + +  K+        I   Y      L   G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPGKRVL---GKIVKLLPYGAFIEIEEGIEGLIHISEMSW 339

Query: 487 DPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 541
                +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V+ 
Sbjct: 340 VKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTERNPWDNIEEKYPIGLHVNA 397

Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 594
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGNSVEAVIL 448

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D ES  + L  K    N   ++    +     +V+ G V  I   G FV     + G 
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI---EAMFPAGTVISGVVTKITAFGAFVELQNGIEGL 505

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
              S+  D   A +     +G++V + ++ ++ +  +++LS+K+    + 
Sbjct: 506 IHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNA 555



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 95/477 (19%), Positives = 192/477 (40%), Gaps = 70/477 (14%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           + ++++PG ++KG V+ ++    +V    G+K+   +P MSEF  +   +   +GAE+  
Sbjct: 45  SDNEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLVLGAEVEV 99

Query: 418 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
            +   + +  ++ ++ +K   + +   + ++ E     I  G IT+  K G  V    G+
Sbjct: 100 YLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GM 155

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED--- 530
           + F P S++  D     +   +VG+V + +I+      R I +S   +++  R+S+    
Sbjct: 156 EAFLPGSQI--DNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    GVV  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQISIGEYRKGVVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVLGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+    +   D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVNAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNE 471


>gi|374579676|ref|ZP_09652770.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
            [Desulfosporosinus youngiae DSM 17734]
 gi|374415758|gb|EHQ88193.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
            [Desulfosporosinus youngiae DSM 17734]
          Length = 659

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 100/442 (22%), Positives = 196/442 (44%), Gaps = 54/442 (12%)

Query: 985  ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC-DVSIGQRVTGYVYKVDNE 1043
            A + A ++ PD     + E+  K + +   E+      + C ++  G RVTG V K+  E
Sbjct: 252  AGLTAGASTPDW---IIEEVYKKMTEMNEQEMDMSAWVDSCPELHQGTRVTGTVVKITRE 308

Query: 1044 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1103
               + I    K +  I  +    ++    +    IG  +T  VL +  E+    L  R  
Sbjct: 309  EIFVDIG--WKCEGVIPINELSATKKTSPEDTVAIGDQITAVVLRVENEEGHTVLSKRKA 366

Query: 1104 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1163
             +       + + + ++      + +   + +++ G  GLVV +G  L G V        
Sbjct: 367  DE-------EGAKERLEKIAESKEEIQAEVVEVVKG--GLVVDVG--LRGFV-------- 407

Query: 1164 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1223
                P S    G  + L+ +  GQ ++ ++++     R    V LS +  L+   +   +
Sbjct: 408  ----PASQIQPGYVEDLNQF-LGQTLRLRMIDYDPAKR---KVVLSQKVILEEERAIKRT 459

Query: 1224 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1283
             L             +E L    +V G V+ +   G FI +   +D  + +S+++   ++
Sbjct: 460  QL-------------LETLKEGDVVSGTVRRMADFGAFIDIG-GIDGLLHISDMAYTRIK 505

Query: 1284 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1343
             P +   IG  V  +VL +EP S +V + LK        Q+ +N      VG IV G++ 
Sbjct: 506  HPSEILTIGDEVEVQVLKLEPQSGKVSLGLKQLKESPWEQASVN----FPVGSIVNGKVV 561

Query: 1344 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403
            R+ S+G F+ +    + GL H+S+L++  V+ +E + + G+ V VK++    E++R+SL 
Sbjct: 562  RITSFGAFVGL-GEGVDGLVHISQLADHRVNKVEDVVKVGDMVSVKVMDCKPEEKRMSLS 620

Query: 1404 MKSSYFKNDA--DNLQMSSEEE 1423
            ++ +   ++   DN  ++S+ E
Sbjct: 621  IREAIADSNKEIDNQALASQSE 642



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 151/355 (42%), Gaps = 37/355 (10%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G  V G V+ +      V      + + P+  +S  +   P     +G ++   VL V++
Sbjct: 295 GTRVTGTVVKITREEIFVDIGWKCEGVIPINELSATKKTSPEDTVAIGDQITAVVLRVEN 354

Query: 425 KR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           +     ++ +K   +     L   AE+ + +     + ++ K G  V    G++GF P S
Sbjct: 355 EEGHTVLSKRKADEEGAKERLEKIAESKEEI--QAEVVEVVKGGLVVDV--GLRGFVPAS 410

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPTRVSEDDLVK 534
           ++   PG        +GQ ++ R++   PA R++ LS          +K T++ E   +K
Sbjct: 411 QI--QPGYVEDLNQFLGQTLRLRMIDYDPAKRKVVLSQKVILEEERAIKRTQLLE--TLK 466

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEF 590
            G +VSG V  +      + +   G   G +   H++D     ++H +    ++  G E 
Sbjct: 467 EGDVVSGTVRRMADFGAFIDI---GGIDGLL---HISDMAYTRIKHPS---EILTIGDEV 517

Query: 591 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFL 648
           + Q+L L+ +S  + L  K    +  +Q    AS   P  S+V+G V  I   G FV   
Sbjct: 518 EVQVLKLEPQSGKVSLGLKQLKESPWEQ----ASVNFPVGSIVNGKVVRITSFGAFVGLG 573

Query: 649 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
             + G    S+  D +   +     VG  V   ++D   E  R++LS++++   S
Sbjct: 574 EGVDGLVHISQLADHRVNKVEDVVKVGDMVSVKVMDCKPEEKRMSLSIREAIADS 628



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 154/385 (40%), Gaps = 63/385 (16%)

Query: 624  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 683
             +H  + V G V  I     FV    +  G  P ++    ++     T  +G  + + +L
Sbjct: 291  ELHQGTRVTGTVVKITREEIFVDIGWKCEGVIPINELSATKKTSPEDTVAIGDQITAVVL 350

Query: 684  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 743
             V +E G   LS +++     D    +E     EKIA    SK                 
Sbjct: 351  RVENEEGHTVLSKRKA-----DEEGAKERL---EKIA---ESKEE--------------- 384

Query: 744  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-----GSVIQAAILDVAKAER 798
            I+ +V E    G+VV       + GF+   Q+    VE      G  ++  ++D   A+R
Sbjct: 385  IQAEVVEVVKGGLVVDV----GLRGFVPASQIQPGYVEDLNQFLGQTLRLRMIDYDPAKR 440

Query: 799  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 858
             V LS K +            +A K+ +  E  K+  V   V+  V  + +    + +  
Sbjct: 441  KVVLSQKVIL--------EEERAIKRTQLLETLKEGDV---VSGTVRRMADFGAFIDIGG 489

Query: 859  YNHSIGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 916
             +   G   +SD  Y   K P +    G  V   V+ L   S  G++ L LK + E    
Sbjct: 490  ID---GLLHISDMAYTRIKHPSEILTIGDEVEVQVLKLEPQS--GKVSLGLKQLKE---- 540

Query: 917  SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 976
             S   +   ++ VGS+V  ++  I      +  G G  G +HI+++ D + N VE++   
Sbjct: 541  -SPWEQASVNFPVGSIVNGKVVRITSFGAFVGLGEGVDGLVHISQLADHRVNKVEDV--- 596

Query: 977  FKIGQTVTARIIAKSNKPDMKKSFL 1001
             K+G  V+ +++    KP+ K+  L
Sbjct: 597  VKVGDMVSVKVM--DCKPEEKRMSL 619



 Score = 43.9 bits (102), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 12/99 (12%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            IV G V  +TS G F+ L   +D  V +S L+D  V   E    +G +V+ +V+  +P  
Sbjct: 555  IVNGKVVRITSFGAFVGLGEGVDGLVHISQLADHRVNKVEDVVKVGDMVSVKVMDCKPEE 614

Query: 1307 KRVEVTLKTS---------DSRTASQSEINNLSNLHVGD 1336
            KR+ ++++ +         +   ASQSEI  ++   +GD
Sbjct: 615  KRMSLSIREAIADSNKEIDNQALASQSEIKPVT---IGD 650



 Score = 43.5 bits (101), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 21/219 (9%)

Query: 232 DYNQH--KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVR 284
           D NQ   + +  R++  DP  R V L+    L   RA         +K GD+   S  VR
Sbjct: 419 DLNQFLGQTLRLRMIDYDPAKRKVVLSQKVILEEERAIKRTQLLETLKEGDVV--SGTVR 476

Query: 285 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG--- 341
                G  +DI          + ISD+A   ++   +    G  V V++L      G   
Sbjct: 477 RMADFGAFIDIGGID----GLLHISDMAYTRIKHPSEILTIGDEVEVQVLKLEPQSGKVS 532

Query: 342 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 401
           L    LK S +E       +   G +V GKV+ + SFGA V    GV  L  +  +++  
Sbjct: 533 LGLKQLKESPWEQ---ASVNFPVGSIVNGKVVRITSFGAFVGLGEGVDGLVHISQLADHR 589

Query: 402 IVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKS 438
           + K     KVG  +  +V+  K   KR++++ ++ +  S
Sbjct: 590 VNKVEDVVKVGDMVSVKVMDCKPEEKRMSLSIREAIADS 628


>gi|317497528|ref|ZP_07955847.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Lachnospiraceae
            bacterium 5_1_63FAA]
 gi|316895211|gb|EFV17374.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Lachnospiraceae
            bacterium 5_1_63FAA]
          Length = 632

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 96/173 (55%), Gaps = 8/173 (4%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  E  E +   M V+G VKNVT  G FI L    D  + +S +S G VE+P+K F IG 
Sbjct: 458  KQKELFEKIEVGMKVEGVVKNVTDFGAFIDLG-GADGLLHISEMSWGRVENPKKVFNIGD 516

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             V   VL  +   +++ ++LK  +     ++E        VG +V G++ R+  +G F+ 
Sbjct: 517  KVT--VLIKDIQGEKIALSLKFPEENPWLKAE----EKYKVGSVVTGKVARMTDFGAFVE 570

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            +E + +  L HVS+++++H+D    +   G++++ K++   K+ ++ISL MK+
Sbjct: 571  LE-SGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSMKA 622



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 16/240 (6%)

Query: 285 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE 340
           +D GL +L  I    V  PA + +SD  E +++K E     G  +   I  F    R + 
Sbjct: 393 LDGGLSVL--IEEARVFIPASL-VSDSYERDLKKYE-----GQEIEFVISEFNPRKRRVI 444

Query: 341 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 400
           G    +L A+  E        ++ GM V+G V  V  FGA +   GG   L  +  MS  
Sbjct: 445 GDRKQLLVAAKKEKQKELFEKIEVGMKVEGVVKNVTDFGAFIDL-GGADGLLHISEMSWG 503

Query: 401 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 460
            +  P K F +G ++   +  ++ ++I ++ K       L     Y   +   +  G + 
Sbjct: 504 RVENPKKVFNIGDKVTVLIKDIQGEKIALSLKFPEENPWLKAEEKYKVGS---VVTGKVA 560

Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           ++   G FV   +G+      S++  +   +PS +  VGQ ++ +++      ++I+LS 
Sbjct: 561 RMTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSM 620



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 35/182 (19%)

Query: 631 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 690
           V G V N+ + G F+  LG   G    S+   G+  +  K + +G  V   I D+  E  
Sbjct: 472 VEGVVKNVTDFGAFID-LGGADGLLHISEMSWGRVENPKKVFNIGDKVTVLIKDIQGE-- 528

Query: 691 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 750
           +I LSLK          F +E+                   LK  E + +GSV+ GKV  
Sbjct: 529 KIALSLK----------FPEEN-----------------PWLKAEEKYKVGSVVTGKVAR 561

Query: 751 SNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
             DFG  V  E   D    ++     H       +  G  I+A ++D  K ++ + LS+K
Sbjct: 562 MTDFGAFVELESGIDALLHVSQIAKEHIDKPSDVLSVGQEIEAKVVDFKKDDKKISLSMK 621

Query: 806 TV 807
            +
Sbjct: 622 AL 623


>gi|239616621|ref|YP_002939943.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505452|gb|ACR78939.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 572

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 193/479 (40%), Gaps = 52/479 (10%)

Query: 313 EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE-GLVFTHSDVKPGMVVKGK 371
           E E+ K  K+Y  G  + V+I+     EG +    K   F   L    +  K G  V G 
Sbjct: 59  ESELVKPLKEYNIGDKIEVQIMKVDEDEGRSVVSEKRIYFRTALKKVENAYKSGEPVTGT 118

Query: 372 VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTH 431
           ++     G  V+    V A  P         ++ G+    G E  F+V+  + K+     
Sbjct: 119 ILGETKGGYNVKLLNVVPAFLPGSQSG----IRRGRPIPEG-EQEFKVINFRKKKRGTNI 173

Query: 432 KKTLVKSKLAILSSYAEATDRLIT-HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 490
             +L   K   + +Y EA +   T  G I  I+  G FVR  N V G  P SE+  DP  
Sbjct: 174 VVSLTAFKEEKVKAYFEALETGSTVEGTIESIKDFGAFVRLTNEVVGLIPASEVSWDPSQ 233

Query: 491 EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVT 547
           +   + +VG  V  +++   P  ++I+LS       P    E+    +GS+V GVV  + 
Sbjct: 234 KVHDVLNVGDKVTVKVIDVDPEKKKISLSLKQLQEDPWNTVEEKY-PVGSVVEGVVKSIV 292

Query: 548 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV----LDNESSNL 603
           P    V +I  G       +E    ++     +K +I+ G   D++ V    +D E   L
Sbjct: 293 PFGFFV-MIEPGVEGLVHISEVFWGNVRRD--LKELIREG---DRVKVKIKDIDKEKRTL 346

Query: 604 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 663
            LS + +L +    +           +V G V  ++ TG  V     ++GF P S+    
Sbjct: 347 SLSYREALGDPWDNI---EEKYKVGEIVDGKVVKVLPTGAIVELEEYVSGFVPVSEMSWN 403

Query: 664 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 723
               +         V++ IL ++ E  R+ LSLKQ    +T+  + + H           
Sbjct: 404 FVDRVEDVVKESSEVKTKILSIDKENRRMRLSLKQ----ATEDPWQKVH----------- 448

Query: 724 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 782
                 +ELK      +G  +EGK+      G VV  + +  V  F+   Q+A   VE+
Sbjct: 449 ------TELK------VGDYVEGKITRLIKSGAVVMVDGYG-VEAFLPASQVAMKRVEN 494



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 176/424 (41%), Gaps = 56/424 (13%)

Query: 1009 SMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE 1068
            S+    E   K  FE  +   G  V G +  + +  A + ++  +   +   + +++PS 
Sbjct: 176  SLTAFKEEKVKAYFEALET--GSTVEGTIESIKDFGAFVRLTNEVVGLIPASEVSWDPS- 232

Query: 1069 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1128
             Q+     ++G  VT  V+ ++ EKK + L L+  Q+       D  N   + +   G +
Sbjct: 233  -QKVHDVLNVGDKVTVKVIDVDPEKKKISLSLKQLQE-------DPWNTVEEKY-PVGSV 283

Query: 1129 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1188
            V G +  I+    G  V I P + G VH +E+    V   L               EG  
Sbjct: 284  VEGVVKSIVPF--GFFVMIEPGVEGLVHISEVFWGNVRRDLKEL----------IREGDR 331

Query: 1189 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1248
            VK K+ +I +  R    + LS R +L                 P  ++E  E      IV
Sbjct: 332  VKVKIKDIDKEKR---TLSLSYREALG---------------DPWDNIE--EKYKVGEIV 371

Query: 1249 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1308
             G V  V   G  + L   +   V +S +S  +V+  E        V  ++LS++  ++R
Sbjct: 372  DGKVVKVLPTGAIVELEEYVSGFVPVSEMSWNFVDRVEDVVKESSEVKTKILSIDKENRR 431

Query: 1309 VEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            + ++LK  T D      +E      L VGD V G+I R+   G  + ++   +      S
Sbjct: 432  MRLSLKQATEDPWQKVHTE------LKVGDYVEGKITRLIKSGAVVMVDGYGVEAFLPAS 485

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKV----DKEKRRISLGMKSSYFKNDADNLQMSSEE 1422
            +++   V+N+E   + GE  + KI+++    +K+ R + + +K      + +  Q + EE
Sbjct: 486  QVAMKRVENLEDAIKIGEHRRFKIIRLVYDPEKDVRNMVVSIKQLLLDKEKEETQKALEE 545

Query: 1423 ESDE 1426
             S E
Sbjct: 546  LSGE 549



 Score = 40.8 bits (94), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 131/308 (42%), Gaps = 60/308 (19%)

Query: 52  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQE----GMVLTAYVK 107
           + +VG  V+  V+ +D +KK+I       SL L  L +     TV+E    G V+   VK
Sbjct: 238 VLNVGDKVTVKVIDVDPEKKKI-------SLSLKQLQED-PWNTVEEKYPVGSVVEGVVK 289

Query: 108 SIEDHGYILHFGLPSFTGFLP---------RNNLAENSGIDVKPGLLLQGVVRSIDRTRK 158
           SI   G+ +    P   G +          R +L E     ++ G  ++  ++ ID+ ++
Sbjct: 290 SIVPFGFFVMIE-PGVEGLVHISEVFWGNVRRDLKEL----IREGDRVKVKIKDIDKEKR 344

Query: 159 VVYLS-----SDP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212
            + LS      DP D + +                G +V  +V  +L  G ++    Y +
Sbjct: 345 TLSLSYREALGDPWDNIEEKYK------------VGEIVDGKVVKVLPTGAIVELEEYVS 392

Query: 213 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAP 267
           G V +  +   F     ++   +  +V  +IL +D  +R + L+L     +P+    +  
Sbjct: 393 GFVPVSEMSWNF-VDRVEDVVKESSEVKTKILSIDKENRRMRLSLKQATEDPW----QKV 447

Query: 268 PSHVKVGDIYDQSKVVR-VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 326
            + +KVGD Y + K+ R +  G  +++D         A++  S VA + V  LE   K G
Sbjct: 448 HTELKVGD-YVEGKITRLIKSGAVVMVD----GYGVEAFLPASQVAMKRVENLEDAIKIG 502

Query: 327 SCVRVRIL 334
              R +I+
Sbjct: 503 EHRRFKII 510


>gi|417643269|ref|ZP_12293329.1| 30S ribosomal protein S1 [Staphylococcus warneri VCU121]
 gi|445059617|ref|YP_007385021.1| 30S ribosomal protein S1 [Staphylococcus warneri SG1]
 gi|330686048|gb|EGG97671.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU121]
 gi|443425674|gb|AGC90577.1| 30S ribosomal protein S1 [Staphylococcus warneri SG1]
          Length = 392

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 22/192 (11%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE+   +G  V  +
Sbjct: 188  LDSLNAGDVIEGTVARLTNFGAFVDIG-GVDGLVHVSELSHQHVQSPEEVVSVGDKVNVK 246

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            V SVE  ++R+ +++K  D+     ++I      H  D++ G + R+ ++G F+ I    
Sbjct: 247  VKSVEKDTERISLSIK--DTLPTPFAQIK--GQFHENDVIEGTVVRLANFGAFVEIA-PG 301

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS------------ 1406
            + GL H+SE+   H+     +   G++V VKIL +D+E  R+SL +K+            
Sbjct: 302  VQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDVVESDA 361

Query: 1407 ----SYFKNDAD 1414
                SY  ND D
Sbjct: 362  STTQSYLNNDTD 373



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 89/168 (52%), Gaps = 6/168 (3%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
            E L  N +++  V  V   G  + + ++    V  S +S  ++E    +F  G+ +  +V
Sbjct: 103  EKLDNNEVIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIEDF-SDFE-GQTIKIKV 158

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
              ++P + RV ++ K  +       + + L +L+ GD++ G + R+ ++G F+ I   + 
Sbjct: 159  EELDPENNRVILSRKAVEQAENEVKKASLLDSLNAGDVIEGTVARLTNFGAFVDIGGVD- 217

Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             GL HVSELS  HV + E +   G+KV VK+  V+K+  RISL +K +
Sbjct: 218  -GLVHVSELSHQHVQSPEEVVSVGDKVNVKVKSVEKDTERISLSIKDT 264



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 153/372 (41%), Gaps = 32/372 (8%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I KP +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAY 70

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDSGAYILSKRQLETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDV--G 128

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
            +GF P S +  D   E  S +  GQ +K ++    P + R+ LS   K    +E+++ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQTIKIKVEELDPENNRVILS--RKAVEQAENEVKK 184

Query: 535 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
                    G ++ G V  +T     V +   G   G +    L+   +H    + V+  
Sbjct: 185 ASLLDSLNAGDVIEGTVARLTNFGAFVDI---GGVDGLVHVSELSH--QHVQSPEEVVSV 239

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
           G + + ++  ++ ++  + LS K +L     Q+       H N V+ G V  +   G FV
Sbjct: 240 GDKVNVKVKSVEKDTERISLSIKDTLPTPFAQI---KGQFHENDVIEGTVVRLANFGAFV 296

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 702
                + G    S+          +    GQ V   IL ++ E  R++LS+K +  +   
Sbjct: 297 EIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDV 356

Query: 703 -STDASFMQEHF 713
             +DAS  Q + 
Sbjct: 357 VESDASTTQSYL 368



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 26/261 (9%)

Query: 279 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 331
           ++KV  V +G GL++D+      P++ +ST      SD   + ++ K+E+   E + V  
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDFEGQTIKIKVEELDPENNRV-- 168

Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
            IL  + +E     + KAS  + L         G V++G V  + +FGA V   GGV  L
Sbjct: 169 -ILSRKAVEQAENEVKKASLLDSL-------NAGDVIEGTVARLTNFGAFVDI-GGVDGL 219

Query: 392 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 449
             +  +S   +  P +   VG ++  +V  V+  ++RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHQHVQSPEEVVSVGDKVNVKVKSVEKDTERISLSIKDTLPTPFAQIKGQFHEN 279

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
               +  G + ++   G FV    GVQG    SE+       P  +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGI 336

Query: 510 IPASRRINLSFMMKPTRVSED 530
              + R++LS  +K T  +ED
Sbjct: 337 DEENERVSLS--IKATLPNED 355


>gi|336325470|ref|YP_004605436.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
 gi|336101452|gb|AEI09272.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
          Length = 488

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 172/383 (44%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVE------VGDEIDAL 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 138

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG---------------QEIEAKIIELDKHRN---N 180

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+
Sbjct: 282  WRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVGVGQ 340

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
               VK++ +D E+RRISL +K +
Sbjct: 341  DAMVKVIDIDLERRRISLSLKQA 363



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 166/398 (41%), Gaps = 50/398 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+  +       +   VGQ     ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|255324624|ref|ZP_05365741.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
 gi|311740509|ref|ZP_07714336.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
            33035]
 gi|255298530|gb|EET77830.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
 gi|311304029|gb|EFQ80105.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
            33035]
          Length = 486

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD++  LL I       + ++   +     P E+ E      +G  V   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVE------VGDEVDAL 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELQAKEEPVTGTVIEVVKG--GLIL 138

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +   +P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG---------------QELEAKIIELDKQRN---N 180

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAYLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 282  WRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVTVGQ 340

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +V VK++ +D E+RRISL +K +
Sbjct: 341  EVMVKVIDIDLERRRISLSVKQA 363



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           ++G    SEL       P  +  VGQ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLS 359



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEVDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEEL-QAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+          +   VGQ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLSVKQA-----DEDYTE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDPETNEWKEGF 405


>gi|229058232|ref|ZP_04196620.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
 gi|423509417|ref|ZP_17485948.1| ribosomal protein S1 [Bacillus cereus HuA2-1]
 gi|423594474|ref|ZP_17570505.1| ribosomal protein S1 [Bacillus cereus VD048]
 gi|228720096|gb|EEL71680.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
 gi|401224271|gb|EJR30829.1| ribosomal protein S1 [Bacillus cereus VD048]
 gi|402456708|gb|EJV88481.1| ribosomal protein S1 [Bacillus cereus HuA2-1]
          Length = 382

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 43.9 bits (102), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|331697654|ref|YP_004333893.1| RNA binding S1 domain-containing protein [Pseudonocardia
            dioxanivorans CB1190]
 gi|326952343|gb|AEA26040.1| RNA binding S1 domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 487

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 131/269 (48%), Gaps = 41/269 (15%)

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            GGL++ IG   +      E++ +    P  G               + ++ K++E+ +  
Sbjct: 139  GGLILDIGLRGFLPASLVEMRRVRDLQPYVG---------------RKIEAKIIELDKN- 182

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                +V LS R+ L+   S   S+              +  L+   + +G V +V + G 
Sbjct: 183  --RNNVVLSRRAWLEQTQSEVRSEF-------------LNQLARGQVRKGVVSSVVNFGA 227

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK      
Sbjct: 228  FVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLK------ 280

Query: 1321 ASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
            A+Q +   L +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E 
Sbjct: 281  ATQEDPWRLYARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQ 339

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + + G+   VK++ +D ++RRISL +K +
Sbjct: 340  VVQVGDDAMVKVIDIDLDRRRISLSLKQA 368



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 152/359 (42%), Gaps = 34/359 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +  +VG  +   VL  + 
Sbjct: 39  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVEVGEFVEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     + +  EA + +   G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEALKEADEPV--EGTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 155 LVEMRRVRDLQP----YVGRKIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLA 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  V      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 RGQVRKGVVSSVVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 265 VLDVDLDRERVSLSLK-----ATQEDPWRLYARTHAIGQIVPGKVTKLVPFGAFVRVEEG 319

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 708
           + G    S+  +       +   VG      ++D++ +  RI+LSLKQ+    T D  F
Sbjct: 320 IEGLVHISELAERHVEIPEQVVQVGDDAMVKVIDIDLDRRRISLSLKQANEGMTVDTEF 378


>gi|229010903|ref|ZP_04168099.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
 gi|423486714|ref|ZP_17463396.1| ribosomal protein S1 [Bacillus cereus BtB2-4]
 gi|423492438|ref|ZP_17469082.1| ribosomal protein S1 [Bacillus cereus CER057]
 gi|423500771|ref|ZP_17477388.1| ribosomal protein S1 [Bacillus cereus CER074]
 gi|423516257|ref|ZP_17492738.1| ribosomal protein S1 [Bacillus cereus HuA2-4]
 gi|423601062|ref|ZP_17577062.1| ribosomal protein S1 [Bacillus cereus VD078]
 gi|423663521|ref|ZP_17638690.1| ribosomal protein S1 [Bacillus cereus VDM022]
 gi|228750303|gb|EEM00133.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
 gi|401155057|gb|EJQ62471.1| ribosomal protein S1 [Bacillus cereus CER074]
 gi|401155922|gb|EJQ63329.1| ribosomal protein S1 [Bacillus cereus CER057]
 gi|401165163|gb|EJQ72482.1| ribosomal protein S1 [Bacillus cereus HuA2-4]
 gi|401231608|gb|EJR38111.1| ribosomal protein S1 [Bacillus cereus VD078]
 gi|401295421|gb|EJS01045.1| ribosomal protein S1 [Bacillus cereus VDM022]
 gi|402438591|gb|EJV70600.1| ribosomal protein S1 [Bacillus cereus BtB2-4]
          Length = 382

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVIVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 44.3 bits (103), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|228964572|ref|ZP_04125681.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
            T04001]
 gi|228795106|gb|EEM42603.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
            T04001]
          Length = 393

 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 6/179 (3%)

Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
            K  E I  L    +V+G V+ +T  G F+ +   +D  V +S +S   VE P +    G+
Sbjct: 178  KKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQ 236

Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
             V  +VLSV+  ++R+ +++K +          N    +  GDI  G +KR+ ++G F+ 
Sbjct: 237  KVKVKVLSVDADTQRISLSIKAAQPGPWE----NVAGEIKAGDIREGVVKRLVTFGAFVE 292

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            I    + GL HVS+++  HV N   +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 293  I-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEALEENN 350



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
            GK +A +++ ++    RV ++ K          +   +S+L  GD+V G ++R+  +G F
Sbjct: 146  GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAF 205

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +   +  GL H+S++S + V+    +   G+KVKVK+L VD + +RISL +K++
Sbjct: 206  VNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAA 259



 Score = 43.9 bits (102), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 130/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K +          SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHAAEKRISLSIKEALEENNVIEDYSQYEPNADSATFQLSDIIGEQLKKL 380



 Score = 40.8 bits (94), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 149/356 (41%), Gaps = 29/356 (8%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 529
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 587
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 644
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
           V  L  + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAL 346


>gi|341821259|emb|CCC57612.1| ribosomal protein S1 [Weissella thailandensis fsh4-2]
          Length = 405

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 140/283 (49%), Gaps = 44/283 (15%)

Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
            DIV   +++ + G  GLVV +   + G V  + ++N  V D            L+ Y +G
Sbjct: 114  DIVEAPVTQAVKG--GLVVDV-EGVRGFVPASMIENRFVQD------------LNQY-KG 157

Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
            Q ++ K++EI+        + LS R  L+   S   + +              ++LS   
Sbjct: 158  QTIRAKIIEINAA---DSRLILSRREVLNEERSAALARI-------------FDELSVGD 201

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            +++G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  
Sbjct: 202  VIEGKVARMTNFGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPER 260

Query: 1307 KRVEVTLKTSDS---RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
            +R+ +++K +      TA++           G ++ G +KRV  +G F+ +    + GL 
Sbjct: 261  ERISLSIKATQPGPWDTAAE-------KAPAGTVLEGTVKRVVDFGAFVEV-FPGVEGLV 312

Query: 1364 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            HVS++S  H+ N   +  AG+KV+VK+L V+ E++R+SL +K+
Sbjct: 313  HVSQISHKHIANPSDVLTAGDKVQVKVLDVNPERQRLSLSIKA 355



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1349
            G+ +  +++ +     R+ ++ +   ++ R+A+ + I     L VGD++ G++ R+ ++G
Sbjct: 157  GQTIRAKIIEINAADSRLILSRREVLNEERSAALARI--FDELSVGDVIEGKVARMTNFG 214

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             FI +   +  GL HVSE+S + V     +   GE+VKVK+L +D E+ RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPERERISLSIKAT 270



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
           G V++GKV  + +FGA +   GGV  L  +  +S   + +P     VG E+  +VLG+  
Sbjct: 200 GDVIEGKVARMTNFGAFIDL-GGVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDP 258

Query: 423 KSKRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           + +RI+++ K T    +     + AE A    +  G + ++   G FV  + GV+G    
Sbjct: 259 ERERISLSIKAT----QPGPWDTAAEKAPAGTVLEGTVKRVVDFGAFVEVFPGVEGLVHV 314

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           S++       PS +   G  V+ +++   P  +R++LS 
Sbjct: 315 SQISHKHIANPSDVLTAGDKVQVKVLDVNPERQRLSLSI 353



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 27/352 (7%)

Query: 360 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMS---EFEIVKPGKKFKVGAE 414
           ++VK G VVKG+V+A+D +   IV   G GV+ + PL  ++   + ++    K   V   
Sbjct: 16  AEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDL 75

Query: 415 LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
           +V   +G   +  +    K  ++++ A     ++ +   I    +T+  K G  V    G
Sbjct: 76  VVVSTIGSDKEGGSYLLSKRRLEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDV-EG 134

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSE--- 529
           V+GF P S +  +   +  + Y  GQ ++ +I+    A  R+ LS   ++   R +    
Sbjct: 135 VRGFVPASMIE-NRFVQDLNQYK-GQTIRAKIIEINAADSRLILSRREVLNEERSAALAR 192

Query: 530 -DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
             D + +G ++ G V  +T     + +   G   G +    ++   E  +    V+  G 
Sbjct: 193 IFDELSVGDVIEGKVARMTNFGAFIDL---GGVDGLVHVSEISH--ERVSQPSDVLSVGE 247

Query: 589 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFV 645
           E   ++L LD E   + LS     I + Q  P D  A      +V+ G V  +++ G FV
Sbjct: 248 EVKVKVLGLDPERERISLS-----IKATQPGPWDTAAEKAPAGTVLEGTVKRVVDFGAFV 302

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
                + G    S+      A+ S     G  V+  +LDVN E  R++LS+K
Sbjct: 303 EVFPGVEGLVHVSQISHKHIANPSDVLTAGDKVQVKVLDVNPERQRLSLSIK 354



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 30/230 (13%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT--VMKSVIKPGYEF 590
           VK+G +V G V  +  N  V+  I     +G IP   L    +     ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDLVV 77

Query: 591 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
              +  D E  + LLS +   + + +     AS    + +V   V   ++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDVEG- 134

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS ++            
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRE------------ 180

Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
              L EE+ A L          +  +   +G VIEGKV    +FG  +  
Sbjct: 181 --VLNEERSAALA---------RIFDELSVGDVIEGKVARMTNFGAFIDL 219


>gi|408790528|ref|ZP_11202146.1| SSU ribosomal protein S1p [Lactobacillus florum 2F]
 gi|408520075|gb|EKK20169.1| SSU ribosomal protein S1p [Lactobacillus florum 2F]
          Length = 405

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 94/170 (55%), Gaps = 6/170 (3%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E + +L+   +V+G V  +T+ G FI L   +D  V +S +S  +V        +G+ V 
Sbjct: 193  EIMNNLAAGDVVEGTVARLTNFGAFIDLG-GIDGLVHISEISYDHVNKAADVLSVGEKVK 251

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
             +VLSVEP   R+ +++K          E        VG ++ G +KR+  +G F+ +  
Sbjct: 252  VKVLSVEPERDRISLSIKQLQPGPWDDIE----EKAPVGSVLDGTVKRLVDFGAFVEV-F 306

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
              + GL H+S++S +H+D    + ++G+K++VK+L +D E+ R++L +K+
Sbjct: 307  AGVEGLVHISQISHEHIDKPSDVLKSGQKIQVKVLSIDPEEHRLALSIKA 356



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +++ V P   R+ ++ +    +   Q+    ++NL  GD+V G + R+ ++G FI +   
Sbjct: 164  KIIEVVPEENRLILSHRAIAEKNRKQAREEIMNNLAAGDVVEGTVARLTNFGAFIDLGGI 223

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            +  GL H+SE+S DHV+    +   GEKVKVK+L V+ E+ RISL +K
Sbjct: 224  D--GLVHISEISYDHVNKAADVLSVGEKVKVKVLSVEPERDRISLSIK 269



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 141/348 (40%), Gaps = 50/348 (14%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 529
           GV+G  P  E+  DP   PS  Y VG  +K  ++S I   +  N S+++   R+      
Sbjct: 46  GVEGVVPSKEVSADPDENPSDKYSVGDQIKVVVVSKIGDDKE-NGSYLLSVRRLEALKIW 104

Query: 530 DDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
           D++    S    + V V  P    + V A G  +G IP   + DH     V       G 
Sbjct: 105 DEIKDKESKDENITVKVTRPVKGGLVVNADGV-RGFIPASMITDHF----VSDLNQYKGQ 159

Query: 589 EFD-QLLVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
           E + +++ +  E + L+LS +  +  N  Q      +++    VV G V  +   G F+ 
Sbjct: 160 ELEVKIIEVVPEENRLILSHRAIAEKNRKQAREEIMNNLAAGDVVEGTVARLTNFGAFID 219

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
            LG + G    S+         +    VG+ V+  +L V  E  RI+LS+KQ      D 
Sbjct: 220 -LGGIDGLVHISEISYDHVNKAADVLSVGEKVKVKVLSVEPERDRISLSIKQLQPGPWDD 278

Query: 707 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 766
                   +EEK                     +GSV++G V    DFG  V  E  + V
Sbjct: 279 --------IEEKAP-------------------VGSVLDGTVKRLVDFGAFV--EVFAGV 309

Query: 767 YGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTV 807
            G +   Q++   ++       SG  IQ  +L +   E  + LS+K +
Sbjct: 310 EGLVHISQISHEHIDKPSDVLKSGQKIQVKVLSIDPEEHRLALSIKAL 357



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G VV+G V  + +FGA +   GG+  L  +  +S   + K      VG ++  +VL V+ 
Sbjct: 201 GDVVEGTVARLTNFGAFIDL-GGIDGLVHISEISYDHVNKAADVLSVGEKVKVKVLSVEP 259

Query: 425 KRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 483
           +R  ++   K L       +   A     L   G + ++   G FV  + GV+G    S+
Sbjct: 260 ERDRISLSIKQLQPGPWDDIEEKAPVGSVL--DGTVKRLVDFGAFVEVFAGVEGLVHISQ 317

Query: 484 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           +  +   +PS +   GQ ++ +++S  P   R+ LS 
Sbjct: 318 ISHEHIDKPSDVLKSGQKIQVKVLSIDPEEHRLALSI 354



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 149/353 (42%), Gaps = 31/353 (8%)

Query: 361 DVKPGMVVKGKVIAVDSFGA-IVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAEL-VF 417
           +VK G VV G+V+AVD+    IV   G GV+ + P   +S      P  K+ VG ++ V 
Sbjct: 18  EVKIGDVVNGEVLAVDNDQQLIVGIEGAGVEGVVPSKEVSADPDENPSDKYSVGDQIKVV 77

Query: 418 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT-KIEK--HGCFVRFYNG 474
            V  +   +   ++   L   +L  L  + E  D+      IT K+ +   G  V   +G
Sbjct: 78  VVSKIGDDKENGSY--LLSVRRLEALKIWDEIKDKESKDENITVKVTRPVKGGLVVNADG 135

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM------KPTRVS 528
           V+GF P S +  D      + Y  GQ ++ +I+  +P   R+ LS         K  R  
Sbjct: 136 VRGFIPASMI-TDHFVSDLNQYK-GQELEVKIIEVVPEENRLILSHRAIAEKNRKQAREE 193

Query: 529 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 587
             + +  G +V G V  +T     + +   G   G +    ++ DH+  A  + SV   G
Sbjct: 194 IMNNLAAGDVVEGTVARLTNFGAFIDL---GGIDGLVHISEISYDHVNKAADVLSV---G 247

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCF 644
            +   ++L ++ E   + LS     I   Q  P  D     P  SV+ G V  +++ G F
Sbjct: 248 EKVKVKVLSVEPERDRISLS-----IKQLQPGPWDDIEEKAPVGSVLDGTVKRLVDFGAF 302

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
           V     + G    S+         S     GQ ++  +L ++ E  R+ LS+K
Sbjct: 303 VEVFAGVEGLVHISQISHEHIDKPSDVLKSGQKIQVKVLSIDPEEHRLALSIK 355


>gi|228907229|ref|ZP_04071090.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
 gi|228852450|gb|EEM97243.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
          Length = 382

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 178/394 (45%), Gaps = 64/394 (16%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIIELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++            ++D+  K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-----------LELDSQKK--EAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHAAEKRISLSIKEALEENN 350



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 149/356 (41%), Gaps = 29/356 (8%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 529
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIIELDREKNRVILSHKAVVELELDSQKKEA 182

Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 587
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 644
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
           V  L  + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAL 346


>gi|227833197|ref|YP_002834904.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
 gi|262184183|ref|ZP_06043604.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
 gi|227454213|gb|ACP32966.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
          Length = 486

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 128/268 (47%), Gaps = 39/268 (14%)

Query: 1141 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTV 1200
            GGL++ IG   +      E++ +   +P  G               Q ++ K++E+ +  
Sbjct: 134  GGLILDIGLRGFLPASLVEMRRVRDLEPYIG---------------QELEAKIIELDKQR 178

Query: 1201 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1260
                +V LS R+ L+   S   S+              +  L    + +G V ++ + G 
Sbjct: 179  N---NVVLSRRAYLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGA 222

Query: 1261 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +    
Sbjct: 223  FVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT---- 277

Query: 1321 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
              +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +
Sbjct: 278  -QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQV 335

Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKSS 1407
               G++V VK++ +D E+RRISL +K +
Sbjct: 336  VNVGQEVMVKVIDIDLERRRISLSVKQA 363



 Score = 60.8 bits (146), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           ++G    SEL       P  + +VGQ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGQEVMVKVIDIDLERRRISLS 359



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 151/355 (42%), Gaps = 33/355 (9%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +     A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAVEEL-HAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
           + G    S+          +   VGQ V   ++D++ E  RI+LS+KQ+    TD
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGQEVMVKVIDIDLERRRISLSVKQADEDYTD 369


>gi|334136644|ref|ZP_08510104.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
 gi|333605843|gb|EGL17197.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
          Length = 418

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 180/383 (46%), Gaps = 52/383 (13%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1086
            V  G  V G + KV+ + A++ I       + + +      +++   +    G+ +   +
Sbjct: 27   VKKGDIVKGKIIKVEQDQAIVDIGYKYDGTIPLRE--LSSVQIENADQAVQEGQEIELKI 84

Query: 1087 LSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLV 1144
            ++I+  K+  +LVL       S ++VD     + +Q  + E  I+   +++++ G  GLV
Sbjct: 85   VTIDDNKE--KLVL-------SKRSVDSEKAWETLQQKLDEKVIIEAVVAEVVKG--GLV 133

Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
            V +G  + G V            P S  +    +  S Y +G+ ++ +V EI R      
Sbjct: 134  VDVG--VRGFV------------PASMVERSFVEDFSDY-KGRTLRLRVKEIDRE---KN 175

Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
             V LS +  LD        D+ + ++  GK            + +G V+ +T  G F+ +
Sbjct: 176  KVILSQKDVLDEEYEAQKKDIISKIEV-GK------------VYEGTVQRLTQFGAFVDI 222

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S ++  +VE P +    G  V+ +VL V+P   +V ++LK +      ++
Sbjct: 223  G-GIDGLVHISEMAWHHVEHPSEIVKEGDKVSVQVLKVDPEKDKVSLSLKATQEGPWEKA 281

Query: 1325 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
            E         G+I+ G +KR+  +G F+ I    + GL H+S+++  H+   + + + G+
Sbjct: 282  E----KTFTTGEIITGTVKRLAGFGAFVEI-APGVEGLVHISQIAHRHIATPQEVLKEGQ 336

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +VKVK+L V+  ++R+SL +K +
Sbjct: 337  EVKVKVLDVNAAEKRVSLSIKET 359



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 25/348 (7%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           VK G +VKGK+I V+   AIV          PL  +S  +I    +  + G E+  +++ 
Sbjct: 27  VKKGDIVKGKIIKVEQDQAIVDIGYKYDGTIPLRELSSVQIENADQAVQEGQEIELKIVT 86

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           +   +  +   K  V S+ A  +   +  +++I    + ++ K G  V    GV+GF P 
Sbjct: 87  IDDNKEKLVLSKRSVDSEKAWETLQQKLDEKVIIEAVVAEVVKGGLVVDV--GVRGFVPA 144

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDL---VKL 535
           S +      E  S Y  G+ ++ R+        ++ LS    + +     + D+   +++
Sbjct: 145 S-MVERSFVEDFSDYK-GRTLRLRVKEIDREKNKVILSQKDVLDEEYEAQKKDIISKIEV 202

Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QL 593
           G +  G V  +T     V +   G   G +    +A  H+EH +    ++K G +   Q+
Sbjct: 203 GKVYEGTVQRLTQFGAFVDI---GGIDGLVHISEMAWHHVEHPS---EIVKEGDKVSVQV 256

Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETGCFVRFLGRL 651
           L +D E   + LS K     + Q+ P + +        ++ G V  +   G FV     +
Sbjct: 257 LKVDPEKDKVSLSLK-----ATQEGPWEKAEKTFTTGEIITGTVKRLAGFGAFVEIAPGV 311

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
            G    S+      A   +    GQ V+  +LDVN+   R++LS+K++
Sbjct: 312 EGLVHISQIAHRHIATPQEVLKEGQEVKVKVLDVNAAEKRVSLSIKET 359


>gi|228951974|ref|ZP_04114071.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
            str. T03a001]
 gi|423504811|ref|ZP_17481402.1| ribosomal protein S1 [Bacillus cereus HD73]
 gi|449088385|ref|YP_007420826.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
            str. HD73]
 gi|228807699|gb|EEM54221.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
            str. T03a001]
 gi|402455333|gb|EJV87116.1| ribosomal protein S1 [Bacillus cereus HD73]
 gi|449022142|gb|AGE77305.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
            str. HD73]
          Length = 382

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVQVAEKRISLSIKEALEENN 350



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 530
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVQVAEKRISLSIKEALEENNVTED 354



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 132/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V+   KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVQVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|261406030|ref|YP_003242271.1| RNA-binding S1 domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261282493|gb|ACX64464.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10]
          Length = 405

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 171/383 (44%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1089
            G  V G + K+++  A ++I       + + +      +L        +G+ V   V+SI
Sbjct: 26   GDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRE--LSSVQLDNASDAVQVGQEVECKVVSI 83

Query: 1090 NKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1147
            N +K+ L L         S + +D  N  D ++    + D+    ++ ++ G  GLV  +
Sbjct: 84   NDDKESLVL---------SKRAIDTENSWDELEKHFADQDVFEVTVADVVKG--GLVADV 132

Query: 1148 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1207
            G   +               P S  +    +  S Y +G+ ++ KV E+ R       V 
Sbjct: 133  GARGF--------------IPASMVERHFVEDFSDY-KGRTLRVKVKELDRE---NNKVI 174

Query: 1208 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1267
            LS +  L+     N   +             + +L    +++G V+ +T  G F+ +   
Sbjct: 175  LSQKDVLEEEFEANKQKV-------------MSELQDGQVLEGTVQRLTQFGAFVDVG-G 220

Query: 1268 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS---RTASQS 1324
            +D  V +S ++  +V+ P      G  V  +VL V+P   ++ +++K +      TA + 
Sbjct: 221  VDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGE- 279

Query: 1325 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                    + GDIV G +KR+ ++G F+ +    + GL H+S++S  H+   + + + G+
Sbjct: 280  ------QFNTGDIVTGVVKRLVTFGAFVELA-PGVEGLVHISQISHKHIGTPQEVLKEGQ 332

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +V+VK+L ++  ++RISL +K +
Sbjct: 333  EVQVKVLDINTSEQRISLSIKET 355



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 134/361 (37%), Gaps = 50/361 (13%)

Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
           G I K+E +  +V       G  P  EL        S    VGQ V+C+++S       +
Sbjct: 31  GTIVKLEDNQAYVSIGYKYDGVIPVRELSSVQLDNASDAVQVGQEVECKVVSINDDKESL 90

Query: 517 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 576
            LS     T  S D+L K  +    V +V   + V   ++A   ++G IP   +  H   
Sbjct: 91  VLSKRAIDTENSWDELEKHFAD-QDVFEVTVADVVKGGLVADVGARGFIPASMVERHFVE 149

Query: 577 ATVMKSVIKPGYEFDQLLV----LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVV 631
                      Y+   L V    LD E++ ++LS K  L    +       S +    V+
Sbjct: 150 DF-------SDYKGRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQKVMSELQDGQVL 202

Query: 632 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
            G V  + + G FV  +G + G    S+         S     G  VR  +L V+ E G+
Sbjct: 203 EGTVQRLTQFGAFVD-VGGVDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKGK 261

Query: 692 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 751
           I+LS+K +     + +  Q                           F  G ++ G V   
Sbjct: 262 ISLSIKAAAPGPWETAGEQ---------------------------FNTGDIVTGVVKRL 294

Query: 752 NDFGVVVSFEEHSDVYGF-----ITHHQLAGA--TVESGSVIQAAILDVAKAERLVDLSL 804
             FG  V       V G      I+H  +      ++ G  +Q  +LD+  +E+ + LS+
Sbjct: 295 VTFGAFVEL--APGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRISLSI 352

Query: 805 K 805
           K
Sbjct: 353 K 353



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S+++ G V++G V  +  FGA V   GGV  L  +  ++   + KP      G ++  +V
Sbjct: 194 SELQDGQVLEGTVQRLTQFGAFVDV-GGVDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKV 252

Query: 420 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH----GCFVRFYNGV 475
           L V  ++  ++     +  K A    +  A ++  T   +T + K     G FV    GV
Sbjct: 253 LKVDPEKGKIS-----LSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVELAPGV 307

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           +G    S++       P  +   GQ V+ +++    + +RI+LS 
Sbjct: 308 EGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRISLSI 352



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 304 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 363
             V +S++A   V K      EG  VRV++L     +G  +  +KA+A            
Sbjct: 223 GLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGEQFN 282

Query: 364 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 423
            G +V G V  + +FGA V+   GV+ L  +  +S   I  P +  K G E+  +VL + 
Sbjct: 283 TGDIVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDIN 342

Query: 424 S--KRITVTHKKT 434
           +  +RI+++ K+T
Sbjct: 343 TSEQRISLSIKET 355


>gi|196039027|ref|ZP_03106334.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
 gi|196030172|gb|EDX68772.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
          Length = 382

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGETLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVGGEVKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 530
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354



 Score = 41.2 bits (95), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 103/229 (44%), Gaps = 40/229 (17%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ      
Sbjct: 186  LKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK----- 237

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
                  VK KVL +      T  + LS++++                  PG       ++
Sbjct: 238  ------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWENVGGEV 271

Query: 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1302
                I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  +VL V
Sbjct: 272  KAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEV 331

Query: 1303 EPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
                KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 332  HVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|229029277|ref|ZP_04185367.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
 gi|228732025|gb|EEL82917.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
          Length = 382

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    L  GDI  G +KR+ ++G F+ +    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGELKAGDIREGVVKRLVTFGAFVEV-LPGVEGLVHVSQIANRHVKNPSE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGELKAGD--IREGVVKRLVTFGAFVEVLPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               S++       PS +  +GQ VK +++    A +RI+LS 
Sbjct: 300 LVHVSQIANRHVKNPSEVLEMGQEVKVKVLEVHVAEKRISLSI 342



 Score = 43.9 bits (102), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 126/294 (42%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               +L    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGELKAGDIREGVVKRLVTFGAFVEVLPGVEGLVHVSQIANRHVKNPSEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K +          SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVIEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|423637751|ref|ZP_17613404.1| ribosomal protein S1 [Bacillus cereus VD156]
 gi|401273012|gb|EJR79000.1| ribosomal protein S1 [Bacillus cereus VD156]
          Length = 382

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 180/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G IKR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVIKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          ++   +A D  I  G I ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKAGD--IREGVIKRLVTFGAFVEILPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 530
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G +K + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVIKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|333990445|ref|YP_004523059.1| 30S ribosomal protein S1 [Mycobacterium sp. JDM601]
 gi|333486413|gb|AEF35805.1| ribosomal protein S1 RpsA [Mycobacterium sp. JDM601]
          Length = 479

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGRE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LNQLQKGAVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +E   + GL H+SEL+E HV+  + +   G+   VK++ +D ++RRISL +K +
Sbjct: 313  VEE-GIEGLVHISELAEQHVEVPDQVVAVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 48.9 bits (115), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 152/386 (39%), Gaps = 58/386 (15%)

Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
            D  I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLTK 93

Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 567 TEHLADHLEHATVMKSV--IKP--GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD 621
                        M+ V  ++P  G E + +++ LD   +N++LS +  L  +  ++ S+
Sbjct: 153 -----------VEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSE 201

Query: 622 -ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 680
             + +   +V  G V +I+  G FV  LG + G    S+         S+   VG  V  
Sbjct: 202 FLNQLQKGAVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTV 260

Query: 681 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 740
            +LDV+ +  R++LSLK +        F + H                           I
Sbjct: 261 EVLDVDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AI 293

Query: 741 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDV 793
           G ++ GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+
Sbjct: 294 GQIVPGKVTKLVPFGAFVRVEE--GIEGLVHISELAEQHVEVPDQVVAVGDDAMVKVIDI 351

Query: 794 AKAERLVDLSLKTVFIDRFREANSNR 819
               R + LSLK    D   E + ++
Sbjct: 352 DLDRRRISLSLKQANEDYTEEFDPSK 377



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            G    S+  +       +   VG      ++D++ +  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAEQHVEVPDQVVAVGDDAMVKVIDIDLDRRRISLSLKQANEDYTEE----- 372

Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWIEGF 407


>gi|332686551|ref|YP_004456325.1| 30S ribosomal protein S1 [Melissococcus plutonius ATCC 35311]
 gi|332370560|dbj|BAK21516.1| SSU ribosomal protein S1p [Melissococcus plutonius ATCC 35311]
          Length = 408

 Score = 80.9 bits (198), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 108/214 (50%), Gaps = 8/214 (3%)

Query: 1230 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1289
            D   K +E ++ L    IV+G +  +T  G FI L   +D  V +S ++  +V+ P    
Sbjct: 191  DKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFIDLG-GIDGLVHVSEIAHNHVDKPSDTL 249

Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1349
             IG+ V  ++LS+ P   R+ +++K     T   +  N      VG I+ G +KR+ S+G
Sbjct: 250  TIGEDVNVKILSINPDEGRISLSIK----ETLPGAWTNIEEKAPVGSILEGTVKRLTSFG 305

Query: 1350 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409
             F+ +    + GL H+S++S  H+     +   G+ ++VK+L+V  E  R++L +K+   
Sbjct: 306  AFVEV-FPGVEGLVHISQISHKHIATPHEVLHEGDDIQVKVLEVHPEDHRLALSIKA--L 362

Query: 1410 KNDADNLQMSSEEESDEAIEEVGSYNRSSLLENS 1443
            +   D+ + S   ES E  EE   +    ++ +S
Sbjct: 363  ETKPDSQRESKNVESYELPEENTGFTMGDIIGDS 396



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 7/172 (4%)

Query: 1237 EKIE-DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1295
            E+IE D     I++  V ++   G  + +  +    V  S + D +V S   E+  GK +
Sbjct: 111  EEIEADFKEERIIEAPVTDIVKGGLVVDVGVR--GFVPASMVEDHFV-SDFSEYK-GKTL 166

Query: 1296 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1355
            A +++ +EP   R+ ++ K       +  ++  + +LH GDIV G+I R+  +G FI + 
Sbjct: 167  AVKIIEIEPSENRLILSHKAVVENDKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFIDLG 226

Query: 1356 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
              +  GL HVSE++ +HVD        GE V VKIL ++ ++ RISL +K +
Sbjct: 227  GID--GLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINPDEGRISLSIKET 276



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 155/383 (40%), Gaps = 58/383 (15%)

Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFY-NGVQGFAPRSELGLDPGCEPSSMYHVGQV 501
           ++S  E T   I  G +  IE     V     G++G  P  EL        +    +G  
Sbjct: 20  INSVQEVTIGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELSTSYVENINDFVKIGDK 79

Query: 502 VKCRIMSSIPASRRINLSFMMKPTRVS--------EDDLVKLGSLVSGVVDVVTPNAVVV 553
           +   ++SSI   +  N ++++   R+         E D  +   + + V D+V    +VV
Sbjct: 80  LDLVVISSIGKDKE-NGNYLLSKRRLDAKKVWEEIEADFKEERIIEAPVTDIVK-GGLVV 137

Query: 554 YVIAKGYSKGTIPTEH-LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 612
            V  +G+   ++  +H ++D  E+     +V        +++ ++   + L+LS K  + 
Sbjct: 138 DVGVRGFVPASMVEDHFVSDFSEYKGKTLAV--------KIIEIEPSENRLILSHKAVVE 189

Query: 613 NS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 671
           N  A +      H+H   +V G +  + + G F+  LG + G    S+         S T
Sbjct: 190 NDKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFID-LGGIDGLVHVSEIAHNHVDKPSDT 248

Query: 672 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 731
             +G+ V   IL +N + GRI+LS+K++   +           +EEK             
Sbjct: 249 LTIGEDVNVKILSINPDEGRISLSIKETLPGAWTN--------IEEKAP----------- 289

Query: 732 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF-----ITHHQLAGA--TVESGS 784
                   +GS++EG V     FG  V  E    V G      I+H  +A     +  G 
Sbjct: 290 --------VGSILEGTVKRLTSFGAFV--EVFPGVEGLVHISQISHKHIATPHEVLHEGD 339

Query: 785 VIQAAILDVAKAERLVDLSLKTV 807
            IQ  +L+V   +  + LS+K +
Sbjct: 340 DIQVKVLEVHPEDHRLALSIKAL 362



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+GK+  +  FGA +   GG+  L  +  ++   + KP     +G ++  ++L +  
Sbjct: 206 GDIVEGKIARLTDFGAFIDL-GGIDGLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINP 264

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
              RI+++ K+TL  +   I       +   I  G + ++   G FV  + GV+G    S
Sbjct: 265 DEGRISLSIKETLPGAWTNIEEKAPVGS---ILEGTVKRLTSFGAFVEVFPGVEGLVHIS 321

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 526
           ++       P  + H G  ++ +++   P   R+ LS     T+
Sbjct: 322 QISHKHIATPHEVLHEGDDIQVKVLEVHPEDHRLALSIKALETK 365



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 187/437 (42%), Gaps = 78/437 (17%)

Query: 929  VGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
            +G +V+ E+  I+  ++ +   G G  G +   E++   ++ VEN+    KIG  +   +
Sbjct: 28   IGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELS---TSYVENINDFVKIGDKLDLVV 84

Query: 988  IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1047
            I+   K     ++L         L+   + +K ++EE +    +         D     L
Sbjct: 85   ISSIGKDKENGNYL---------LSKRRLDAKKVWEEIEADFKEERIIEAPVTDIVKGGL 135

Query: 1048 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1107
             +   ++   F+  S  E   + +F    + GK +   ++ I   +   RL+L       
Sbjct: 136  VVDVGVRG--FVPASMVEDHFVSDFSE--YKGKTLAVKIIEIEPSEN--RLIL------- 182

Query: 1108 SDKTVDISND------NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1161
            S K V + ND       +   +H GDIV G+I++ L+  G  +   G  + G VH +E+ 
Sbjct: 183  SHKAV-VENDKAAKKVEIMDHLHAGDIVEGKIAR-LTDFGAFIDLGG--IDGLVHVSEIA 238

Query: 1162 NICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1221
            +  V  P         D L+    G+ V  K+L I+        + LS++ +L G + TN
Sbjct: 239  HNHVDKP--------SDTLT---IGEDVNVKILSINPD---EGRISLSIKETLPG-AWTN 283

Query: 1222 SSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1280
                             IE+ +P   I++G VK +TS G F+ +   ++  V +S +S  
Sbjct: 284  -----------------IEEKAPVGSILEGTVKRLTSFGAFVEVFPGVEGLVHISQISHK 326

Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL---------SN 1331
            ++ +P +    G  +  +VL V P   R+ +++K  +++  SQ E  N+         + 
Sbjct: 327  HIATPHEVLHEGDDIQVKVLEVHPEDHRLALSIKALETKPDSQRESKNVESYELPEENTG 386

Query: 1332 LHVGDIVIGQIKRVESY 1348
              +GDI+   +K  E +
Sbjct: 387  FTMGDIIGDSLKEQEDH 403



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 144/359 (40%), Gaps = 23/359 (6%)

Query: 350 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKK 408
           +  E  + +  +V  G +VKG+V+A++    IV   G G++ + P   +S   +      
Sbjct: 14  ATMEEAINSVQEVTIGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELSTSYVENINDF 73

Query: 409 FKVGAEL---VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 465
            K+G +L   V   +G   +       K  + +K       A+  +  I    +T I K 
Sbjct: 74  VKIGDKLDLVVISSIGKDKENGNYLLSKRRLDAKKVWEEIEADFKEERIIEAPVTDIVKG 133

Query: 466 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--- 522
           G  V    GV+GF P S +  D      S Y  G+ +  +I+   P+  R+ LS      
Sbjct: 134 GLVVDV--GVRGFVPAS-MVEDHFVSDFSEYK-GKTLAVKIIEIEPSENRLILSHKAVVE 189

Query: 523 ---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 579
                 +V   D +  G +V G +  +T     + +   G   G +    +A +  H   
Sbjct: 190 NDKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFIDL---GGIDGLVHVSEIAHN--HVDK 244

Query: 580 MKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 638
               +  G + + ++L ++ +   + LS K +L  +   +   A      S++ G V  +
Sbjct: 245 PSDTLTIGEDVNVKILSINPDEGRISLSIKETLPGAWTNIEEKAP---VGSILEGTVKRL 301

Query: 639 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
              G FV     + G    S+      A   +  + G  ++  +L+V+ E  R+ LS+K
Sbjct: 302 TSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHEGDDIQVKVLEVHPEDHRLALSIK 360



 Score = 43.9 bits (102), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 1314 KTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
            K   S  A+  E IN++  + +GDIV G++  +E   + + IE T + G+    ELS  +
Sbjct: 7    KQEKSENATMEEAINSVQEVTIGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELSTSY 66

Query: 1373 VDNIETIYRAGEKVKVKIL 1391
            V+NI    + G+K+ + ++
Sbjct: 67   VENINDFVKIGDKLDLVVI 85


>gi|445064615|ref|ZP_21376633.1| 30S ribosomal protein S1 [Brachyspira hampsonii 30599]
 gi|444504009|gb|ELV04753.1| 30S ribosomal protein S1 [Brachyspira hampsonii 30599]
          Length = 554

 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 151/340 (44%), Gaps = 19/340 (5%)

Query: 367 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 424
           ++ GKV  ++ FGA V+   G      +P+MS  ++V P      G E +F+VL +  ++
Sbjct: 194 IINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVVNPKSIISKGEERMFKVLHIDKEN 253

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
           K++ +  K+         +  Y       +  G +T ++K G FV+  +G++G    S+L
Sbjct: 254 KKVDLGIKQLDEDPWGKFVEQYQIGD---VIQGEVTNVKKFGAFVKVADGIEGLVHVSDL 310

Query: 485 GLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVS 540
             +     P+     G  ++C+I+    A R++ L        P    E D   + S V 
Sbjct: 311 SWNSHVNNPADFVKKGAFLECKILDMNAAERKLTLGLKQVKENPWDTVEKDF-PVKSAVK 369

Query: 541 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNE 599
             V  +  N   V+ +  G  +G        D   +   MK  +K G E + +++ +D +
Sbjct: 370 CKVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVNMKDYVKEGEEANMVIMSIDRD 426

Query: 600 SSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTGFAPRS 658
              + LS K++  +S  +L   A   HP  S+V G V  I+++G  +     L G+   S
Sbjct: 427 KQRIKLSYKHTK-DSPWRLFEKA---HPQGSIVDGTVKAIVDSGAIIALEDDLEGYMHIS 482

Query: 659 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
           +    + + L     VG++    + +VN    RI+LS ++
Sbjct: 483 QVEIPKGSTLEDVLKVGETYPFVVREVNKSKRRISLSRRE 522



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            + +L  N I+ G VKN+   G F+ ++   D  + + N+S   V +P+     G+    +
Sbjct: 186  LNNLQENDIINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVVNPKSIISKGEERMFK 245

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VL ++  +K+V++ +K  D     +     +    +GD++ G++  V+ +G F+ + +  
Sbjct: 246  VLHIDKENKKVDLGIKQLDEDPWGKF----VEQYQIGDVIQGEVTNVKKFGAFVKVAD-G 300

Query: 1359 LVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  IEGLVHVSDLSWNSHVNNPADFVKKGAFLECKILDMNAAERKLTLGLK 348



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 111/540 (20%), Positives = 198/540 (36%), Gaps = 80/540 (14%)

Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP--GCEPSSMYHVGQVVKCRIMSSIP 511
           I  G + + +    F+ F +  +G   RSE   +P  G E  ++          I+S   
Sbjct: 31  IVKGKVVQFDDTDVFIDFDSKSEGKIKRSEFDKEPIIGEEIEAIVSGEDDKGYVILSKSE 90

Query: 512 ASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 571
             +R +   +        D+ VK  + V+GVV  V      V ++     +   P   + 
Sbjct: 91  IDKRKSQELI--------DNAVKNNTSVTGVVKEVVKGGFKVSIMG---HQAFCPFSQI- 138

Query: 572 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNS 629
             L         I   YEF    V+     ++++S +  L+  AQ   + +  +++  N 
Sbjct: 139 -DLARGIKESDYIGKEYEF---RVIKKNGRDVVVSRRV-LLEEAQNAGIETFLNNLQEND 193

Query: 630 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 689
           +++G V NI + G FV       GF         +  +       G+     +L ++ E 
Sbjct: 194 IINGKVKNIEKFGAFVEITPGFDGFLAIPNMSWDKVVNPKSIISKGEERMFKVLHIDKEN 253

Query: 690 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 749
            ++ L +KQ               L E+               K+VE + IG VI+G+V 
Sbjct: 254 KKVDLGIKQ---------------LDEDPWG------------KFVEQYQIGDVIQGEVT 286

Query: 750 ESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 803
               FG  V   +      H     + +H       V+ G+ ++  ILD+  AER + L 
Sbjct: 287 NVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPADFVKKGAFLECKILDMNAAERKLTLG 346

Query: 804 LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 863
           LK V               K+       KD  V   V   V+ + +N+ V  LP     I
Sbjct: 347 LKQV---------------KENPWDTVEKDFPVKSAVKCKVKRIIKNFAVFELPNGLEGI 391

Query: 864 GYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 922
              S  D+       K ++  G+     +M++       +L       S   T  S    
Sbjct: 392 CDISDFDWRNNIVNMKDYVKEGEEANMVIMSIDRDKQRIKL-------SYKHTKDSPWRL 444

Query: 923 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 982
            + ++  GS+V   +  I      +       G +HI++V   K + +E++    K+G+T
Sbjct: 445 FEKAHPQGSIVDGTVKAIVDSGAIIALEDDLEGYMHISQVEIPKGSTLEDV---LKVGET 501



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 135/298 (45%), Gaps = 45/298 (15%)

Query: 1116 NDNMQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
            N  ++TF++   E DI+ G++  I     G  V+I P   G +    +    V +P S  
Sbjct: 179  NAGIETFLNNLQENDIINGKVKNIEKF--GAFVEITPGFDGFLAIPNMSWDKVVNPKSII 236

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
             +G+        E  F   KVL I +  +    V+L ++                D D  
Sbjct: 237  SKGE--------ERMF---KVLHIDKENK---KVDLGIKQ--------------LDEDPW 268

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPI 1291
            GK +E+ +      ++QG V NV   G F+ ++  ++  V +S+LS + +V +P      
Sbjct: 269  GKFVEQYQ---IGDVIQGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPADFVKK 325

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESYGL 1350
            G  +  ++L +    +++ + LK          E     +  V   V  ++KR+ +++ +
Sbjct: 326  GAFLECKILDMNAAERKLTLGLKQVKENPWDTVE----KDFPVKSAVKCKVKRIIKNFAV 381

Query: 1351 FITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            F  + N  L G+C +S+    +++ N++   + GE+  + I+ +D++K+RI L  K +
Sbjct: 382  F-ELPN-GLEGICDISDFDWRNNIVNMKDYVKEGEEANMVIMSIDRDKQRIKLSYKHT 437



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 140/353 (39%), Gaps = 51/353 (14%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +VKGKV+  D     + F    +        SEF+     K+  +G E+   V G   
Sbjct: 29  GKIVKGKVVQFDDTDVFIDFDSKSEGKI---KRSEFD-----KEPIIGEEIEAIVSGEDD 80

Query: 425 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
           K   +  K  + K K   L   A   +  +T G + ++ K G  V    G Q F P S++
Sbjct: 81  KGYVILSKSEIDKRKSQELIDNAVKNNTSVT-GVVKEVVKGGFKVSIM-GHQAFCPFSQI 138

Query: 485 GLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 540
            L  G + S   ++G+  + R++      +  SRR+ L         +  + ++   +++
Sbjct: 139 DLARGIKESD--YIGKEYEFRVIKKNGRDVVVSRRVLLEEAQNAGIETFLNNLQENDIIN 196

Query: 541 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLVLDNE 599
           G V  +      V  I  G+  G +   +++   +     KS+I  G E   ++L +D E
Sbjct: 197 GKVKNIEKFGAFVE-ITPGFD-GFLAIPNMS--WDKVVNPKSIISKGEERMFKVLHIDKE 252

Query: 600 SSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
           +  + L  K        QL  D             V+ G V N+ + G FV+    + G 
Sbjct: 253 NKKVDLGIK--------QLDEDPWGKFVEQYQIGDVIQGEVTNVKKFGAFVKVADGIEGL 304

Query: 655 APRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 698
              S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 305 VHVS--------DLSWNSHVNNPADFVKKGAFLECKILDMNAAERKLTLGLKQ 349



 Score = 41.6 bits (96), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 138/332 (41%), Gaps = 74/332 (22%)

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGG 1142
            VL I+KE K + L ++   +           D    F+ +   GD++ G ++ +     G
Sbjct: 246  VLHIDKENKKVDLGIKQLDE-----------DPWGKFVEQYQIGDVIQGEVTNVKKF--G 292

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
              V++   + G VH ++L           ++    +P     +G F++CK+L+++   R 
Sbjct: 293  AFVKVADGIEGLVHVSDL----------SWNSHVNNPADFVKKGAFLECKILDMNAAER- 341

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
                +L+L     G+            + P   +EK  D      V+  VK +       
Sbjct: 342  ----KLTL-----GLKQVK--------ENPWDTVEK--DFPVKSAVKCKVKRIIKNFAVF 382

Query: 1263 MLSRKLDAKVLLS---------NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
             L   L+    +S         N+ D YV+  E+   +       ++S++   +R++++ 
Sbjct: 383  ELPNGLEGICDISDFDWRNNIVNMKD-YVKEGEEANMV-------IMSIDRDKQRIKLSY 434

Query: 1314 K-TSDS--RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1370
            K T DS  R   ++          G IV G +K +   G  I +E+ +L G  H+S++  
Sbjct: 435  KHTKDSPWRLFEKAHPQ-------GSIVDGTVKAIVDSGAIIALED-DLEGYMHISQVEI 486

Query: 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
                 +E + + GE     + +V+K KRRISL
Sbjct: 487  PKGSTLEDVLKVGETYPFVVREVNKSKRRISL 518


>gi|423610022|ref|ZP_17585883.1| ribosomal protein S1 [Bacillus cereus VD107]
 gi|401249339|gb|EJR55645.1| ribosomal protein S1 [Bacillus cereus VD107]
          Length = 382

 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 182/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ I        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNIG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTEY-KGKALAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++            ++D+  K  E I  L    IV+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-----------QELDSKKK--EAISSLKEGDIVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N  S +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVASEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPSE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++V VK+L+V   ++RISL +K +  +N+        E  SD A
Sbjct: 317  VLEMGQEVTVKVLEVHVAEKRISLSIKEALEENNVIEDYSQYEPNSDSA 365



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 132/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GKA+   ++ +++EK   R++L      + ++ +D    
Sbjct: 127  FIPASLVEVHYVEDFTE--YKGKALAVKIVELDREKN--RVILS--HKAVVEQELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGDIV G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDIVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VASEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPSEVLEMGQEVTV 326

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEINNLS-NLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K +          SQ E N+ S    + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVIEDYSQYEPNSDSATFQLSDIIGEQLKKL 380



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 150/360 (41%), Gaps = 37/360 (10%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMNSKELQVGDVVTGSVTKVEEKQVLVNIGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEDDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--- 532
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS       V E +L   
Sbjct: 125 RGFIPASLVEVHY-VEDFTEYK-GKALAVKIVELDREKNRVILSH----KAVVEQELDSK 178

Query: 533 -------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SV 583
                  +K G +V G V  +T     V V   G   G +   H++  + H  V +   V
Sbjct: 179 KKEAISSLKEGDIVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEV 231

Query: 584 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIE 640
           ++ G +   ++L +D ++  + LS     I +AQ  P +  AS I    +  G V  ++ 
Sbjct: 232 LEQGQKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVASEIKAGDIREGVVKRLVT 286

Query: 641 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
            G FV  L  + G    S+  +    + S+   +GQ V   +L+V+    RI+LS+K++ 
Sbjct: 287 FGAFVEILPGVEGLVHVSQIANRHVKNPSEVLEMGQEVTVKVLEVHVAEKRISLSIKEAL 346


>gi|219848105|ref|YP_002462538.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans DSM
            9485]
 gi|219542364|gb|ACL24102.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
          Length = 500

 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            +++DL P M ++G V ++   G F+ +    D  V +S +SD  +++P +   IG  V  
Sbjct: 96   RLKDLQPGMELEGKVTSIALYGIFVDVGVGRDGLVHISEMSDRRIDTPSELVQIGDTVKV 155

Query: 1298 RVLSVEPLSKRVEVTL----KTSDSRTASQSEI------------NNLSNLHVGDIVIGQ 1341
             V SV+  ++R+ +T+    +    R + QS+               L++L VG+IV G 
Sbjct: 156  WVKSVDLDARRISLTMLNPSRGEKPRRSRQSQPAQPQPRRQEVDREKLASLKVGEIVEGV 215

Query: 1342 IKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1401
            I     +G F  I      GL H+SELSE  V+  E   + GE+ + K+L++D E  RIS
Sbjct: 216  ITGFAPFGAFADI-GVGKDGLIHISELSEGRVEKPEDAVKVGERYQFKVLEIDGEGTRIS 274

Query: 1402 LGMKSS 1407
            L ++ +
Sbjct: 275  LSLRRA 280



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 40/225 (17%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            EK+  L    IV+G +      G F  +    D  + +S LS+G VE PE    +G+   
Sbjct: 201  EKLASLKVGEIVEGVITGFAPFGAFADIGVGKDGLIHISELSEGRVEKPEDAVKVGERYQ 260

Query: 1297 GRVLSVE-------------PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1343
             +VL ++               ++R                    +  L  G I+ G + 
Sbjct: 261  FKVLEIDGEGTRISLSLRRAQRTQR--------------------MQQLEPGQIIEGTVS 300

Query: 1344 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403
             + ++G F+ I      GL H+S L+   V  +E + + G+KVKVK+L VD + +RISL 
Sbjct: 301  GIATFGAFVDI-GVGRDGLVHISALAPHRVAKVEDVVKVGDKVKVKVLGVDPQSKRISLT 359

Query: 1404 MKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQ 1448
            M+      + +    ++ +E+ E  EEV    R + LE  + A Q
Sbjct: 360  MRL-----EEEQPATTAGDEAAEPAEEVTPTRRGN-LERFAAAAQ 398


>gi|424780259|ref|ZP_18207139.1| SSU ribosomal protein S1p [Catellicoccus marimammalium M35/04/3]
 gi|422843217|gb|EKU27658.1| SSU ribosomal protein S1p [Catellicoccus marimammalium M35/04/3]
          Length = 394

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 96/170 (56%), Gaps = 8/170 (4%)

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
            ++++L  + ++ G V  +T  G F+ L   +D  V +S ++  +V  P  E  +G  V  
Sbjct: 195  RLQELVADEVLTGKVARLTDFGAFVDLG-GVDGLVHVSEIAHHHVAKPSDELKVGDEVTV 253

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIEN 1356
            ++LSV+P   RV +++K +      +     L++ + VGD++ G +KR+  +G F+ I  
Sbjct: 254  KILSVDPEEGRVSLSMKAT-----QKGPWEKLADEVAVGDVLEGVVKRLTDFGAFVEI-F 307

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
              + GL H+S++S  H+     + + G++VKVK+L ++  +RRI L +K+
Sbjct: 308  PGVEGLVHISQISHKHIATPHEVLKPGQEVKVKVLDMNPAERRIGLSLKA 357



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 367 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK- 425
           V+ GKV  +  FGA V   GGV  L  +  ++   + KP  + KVG E+  ++L V  + 
Sbjct: 204 VLTGKVARLTDFGAFVDL-GGVDGLVHVSEIAHHHVAKPSDELKVGDEVTVKILSVDPEE 262

Query: 426 -RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484
            R++++ K T  K     L+      D L   G + ++   G FV  + GV+G    S++
Sbjct: 263 GRVSLSMKATQ-KGPWEKLADEVAVGDVL--EGVVKRLTDFGAFVEIFPGVEGLVHISQI 319

Query: 485 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
                  P  +   GQ VK +++   PA RRI LS 
Sbjct: 320 SHKHIATPHEVLKPGQEVKVKVLDMNPAERRIGLSL 355



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 10/170 (5%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP--IGKLVAG 1297
            E    N IV+G V +V   G  + L  +    V  S ++D Y+    K+F    G+++  
Sbjct: 111  EKFKNNEIVEGKVTDVVRGGLVVDLGVR--GFVPASMITDHYI----KDFSEYKGRVLPL 164

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +++ +EP   R+ ++     +    ++    L  L   +++ G++ R+  +G F+ +   
Sbjct: 165  KIMEIEPSENRLILSHVAVMNEEKEEARQKRLQELVADEVLTGKVARLTDFGAFVDLGGV 224

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  GL HVSE++  HV       + G++V VKIL VD E+ R+SL MK++
Sbjct: 225  D--GLVHVSEIAHHHVAKPSDELKVGDEVTVKILSVDPEEGRVSLSMKAT 272



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 146/351 (41%), Gaps = 58/351 (16%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR------- 526
           GV+G  P  EL   P  +   +  VG V+   ++S+I  S + N ++++   R       
Sbjct: 49  GVEGVIPSRELSTLPFEKIEDIVKVGDVLDLVVISTI--SDKENGNYLLSKRRLDAKKAW 106

Query: 527 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
           V  ++  K   +V G V  V    +VV +  +G+   ++ T+H   +++  +  K  + P
Sbjct: 107 VDIEEKFKNNEIVEGKVTDVVRGGLVVDLGVRGFVPASMITDH---YIKDFSEYKGRVLP 163

Query: 587 GYEFDQLLVLDNE-SSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGC 643
                 L +++ E S N L+ +  +++N  ++         +  + V+ G V  + + G 
Sbjct: 164 ------LKIMEIEPSENRLILSHVAVMNEEKEEARQKRLQELVADEVLTGKVARLTDFGA 217

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           FV  LG + G    S+      A  S    VG  V   IL V+ E GR++LS+K +    
Sbjct: 218 FVD-LGGVDGLVHVSEIAHHHVAKPSDELKVGDEVTVKILSVDPEEGRVSLSMKAT---- 272

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
                                    G   K  +   +G V+EG V    DFG  V     
Sbjct: 273 -----------------------QKGPWEKLADEVAVGDVLEGVVKRLTDFGAFVEI--F 307

Query: 764 SDVYGF-----ITHHQLAGA--TVESGSVIQAAILDVAKAERLVDLSLKTV 807
             V G      I+H  +A     ++ G  ++  +LD+  AER + LSLK +
Sbjct: 308 PGVEGLVHISQISHKHIATPHEVLKPGQEVKVKVLDMNPAERRIGLSLKAL 358



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 145/350 (41%), Gaps = 27/350 (7%)

Query: 361 DVKPGMVVKGKVIAV-DSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +V  G  VKG+V+++ D    IV   G GV+ + P   +S     K     KVG  L   
Sbjct: 21  EVSVGDTVKGEVLSIQDGKQVIVGIEGAGVEGVIPSRELSTLPFEKIEDIVKVGDVLDLV 80

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           V+   S +    +   L K +L    ++ +  ++     I  G +T + + G  V    G
Sbjct: 81  VISTISDKENGNY--LLSKRRLDAKKAWVDIEEKFKNNEIVEGKVTDVVRGGLVVDL--G 136

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
           V+GF P S +  D   +  S Y  G+V+  +IM   P+  R+ LS +       E+   K
Sbjct: 137 VRGFVPASMI-TDHYIKDFSEYK-GRVLPLKIMEIEPSENRLILSHVAVMNEEKEEARQK 194

Query: 535 -LGSLV-----SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
            L  LV     +G V  +T     V +   G   G +    +A H  H       +K G 
Sbjct: 195 RLQELVADEVLTGKVARLTDFGAFVDL---GGVDGLVHVSEIAHH--HVAKPSDELKVGD 249

Query: 589 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647
           E   ++L +D E   + LS K +     ++L   A  +    V+ G V  + + G FV  
Sbjct: 250 EVTVKILSVDPEEGRVSLSMKATQKGPWEKL---ADEVAVGDVLEGVVKRLTDFGAFVEI 306

Query: 648 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
              + G    S+      A   +    GQ V+  +LD+N    RI LSLK
Sbjct: 307 FPGVEGLVHISQISHKHIATPHEVLKPGQEVKVKVLDMNPAERRIGLSLK 356



 Score = 44.3 bits (103), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 139/339 (41%), Gaps = 47/339 (13%)

Query: 276 IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 335
           I D  +V+    G G+   IPS  +ST  +  I D+            K G  + + ++ 
Sbjct: 35  IQDGKQVIVGIEGAGVEGVIPSRELSTLPFEKIEDIV-----------KVGDVLDLVVIS 83

Query: 336 FRHLEGLATGIL---KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 392
               +     +L   +  A +  V      K   +V+GKV  V   G +V    GV+   
Sbjct: 84  TISDKENGNYLLSKRRLDAKKAWVDIEEKFKNNEIVEGKVTDVVRGGLVVDL--GVRGFV 141

Query: 393 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE---- 448
           P   +++  I    K F   +E   RVL +K   I  +  + L+ S +A+++   E    
Sbjct: 142 PASMITDHYI----KDF---SEYKGRVLPLKIMEIEPSENR-LILSHVAVMNEEKEEARQ 193

Query: 449 ------ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
                   D ++T G + ++   G FV    GV G    SE+      +PS    VG  V
Sbjct: 194 KRLQELVADEVLT-GKVARLTDFGAFVDL-GGVDGLVHVSEIAHHHVAKPSDELKVGDEV 251

Query: 503 KCRIMSSIPASRRINLSFMMKPTRVSE----DDLVKLGSLVSGVVDVVTPNAVVVYVIAK 558
             +I+S  P   R++LS  MK T+        D V +G ++ GVV  +T     V +   
Sbjct: 252 TVKILSVDPEEGRVSLS--MKATQKGPWEKLADEVAVGDVLEGVVKRLTDFGAFVEIFPG 309

Query: 559 GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 597
              +G +    ++   +H      V+KPG E  ++ VLD
Sbjct: 310 --VEGLVHISQISH--KHIATPHEVLKPGQEV-KVKVLD 343


>gi|453051391|gb|EME98899.1| 30S ribosomal protein S1 [Streptomyces mobaraensis NBRC 13819 = DSM
            40847]
          Length = 501

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 187/416 (44%), Gaps = 66/416 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VSVGDQVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 375



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG ++   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDQVEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|418619939|ref|ZP_13182750.1| 30S ribosomal protein S1 [Staphylococcus hominis VCU122]
 gi|374823502|gb|EHR87497.1| 30S ribosomal protein S1 [Staphylococcus hominis VCU122]
          Length = 393

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 96/174 (55%), Gaps = 6/174 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 189  LDSLNEGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVQSPEDVVSVGQEVDVK 247

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            V SVE  ++R+ +++K     T      N     H  D++ G++ R+ ++G F+ I    
Sbjct: 248  VKSVEKDTERISLSIKD----TLPTPFENIKGKFHENDVIEGKVIRLANFGAFVEIA-PG 302

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            + GL H+SE++  H+     +   G++V VKIL +D+E  RISL +K++    D
Sbjct: 303  VQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDEENERISLSIKATLPNED 356



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +D+K G  V GKV  V+    +V   G     + P+  +S   I  P +    G E+   
Sbjct: 12  NDIKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAY 71

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 72  VTKIEIDEANESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDV--G 129

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 130 QRGFVPASLISTD-FIEDFSVFE-GQTIRLKVEELDPENNRVILS--RKAVEQAENDVKK 185

Query: 535 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
                    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 186 ASLLDSLNEGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVQSPEDVVSV 240

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
           G E D ++  ++ ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 241 GQEVDVKVKSVEKDTERISLSIKDTLPTPFENI---KGKFHENDVIEGKVIRLANFGAFV 297

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
                + G    S+         S+    GQ V   IL ++ E  RI+LS+K + 
Sbjct: 298 EIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDEENERISLSIKATL 352



 Score = 44.7 bits (104), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 116/292 (39%), Gaps = 59/292 (20%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
           +K G  V+G V  V    VVV++    Y+ G IP   L+ H  H      +I  G E + 
Sbjct: 14  IKEGDKVTGKVQQVEDKQVVVHIDGAKYN-GIIPISQLSTH--HIENPSEIISEGDEIEA 70

Query: 593 LLV---LD--NESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIET 641
            +    +D  NES   +LS +        QL ++ S+      +  + V+   V  +++ 
Sbjct: 71  YVTKIEIDEANESGAYILSKR--------QLETEKSYEYLQEKLDNDEVIEAKVTEVVKG 122

Query: 642 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701
           G  V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    
Sbjct: 123 GLVVDVGQR--GFVPASLISTDFIEDFS--VFEGQTIRLKVEELDPENNRVILSRKAVEQ 178

Query: 702 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 761
           +  D           +K ++L S                G VI+GKV    +FG  V   
Sbjct: 179 AENDV----------KKASLLDSLNE-------------GDVIKGKVARLTNFGAFVDI- 214

Query: 762 EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
               V G +   +L+   V+S         DV    + VD+ +K+V  D  R
Sbjct: 215 --GGVDGLVHVSELSHEHVQSPE-------DVVSVGQEVDVKVKSVEKDTER 257



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 162/393 (41%), Gaps = 80/393 (20%)

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 150
           ++EG  +T  V+ +ED   ++H     + G +P + L+    EN    +  G  ++  V 
Sbjct: 14  IKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAYVT 73

Query: 151 -----------------RSIDRTRKVVYLSS--DPDTVSKC-VTKDLKG-ISIDL----L 185
                            R ++  +   YL    D D V +  VT+ +KG + +D+     
Sbjct: 74  KIEIDEANESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDVGQRGF 133

Query: 186 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 245
           VP  ++ST           +   + F G      ++   P  N             R++ 
Sbjct: 134 VPASLISTD---------FIEDFSVFEGQTIRLKVEELDPENN-------------RVIL 171

Query: 246 VDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 305
              + +AV    N   +   +    +  GD+  + KV R+    G  +DI          
Sbjct: 172 ---SRKAVEQAEND--VKKASLLDSLNEGDVI-KGKVARL-TNFGAFVDIGGVD----GL 220

Query: 306 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLV--FTHS 360
           V +S+++ E V+  E     G  V V++    +  E ++  I     + FE +   F  +
Sbjct: 221 VHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDTERISLSIKDTLPTPFENIKGKFHEN 280

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           DV     ++GKVI + +FGA V+   GV+ L  +  ++   I  P +  + G ++  ++L
Sbjct: 281 DV-----IEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKIL 335

Query: 421 GV--KSKRITVTHKKTL-----VKSKLAILSSY 446
           G+  +++RI+++ K TL     ++S  A   SY
Sbjct: 336 GIDEENERISLSIKATLPNEDVIESDEATTQSY 368


>gi|408829074|ref|ZP_11213964.1| 30S ribosomal protein S1 [Streptomyces somaliensis DSM 40738]
          Length = 499

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|384449426|ref|YP_005662028.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae LPCoLN]
 gi|269303190|gb|ACZ33290.1| ribosomal protein S1 [Chlamydophila pneumoniae LPCoLN]
          Length = 580

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 73/401 (18%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            +SIG+   G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVLGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KNI              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPSEVVNKGDEVEAIVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVNAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K   S   ++ E    +    G ++ G + ++ ++G F+ ++N  + GL HVSELS+   
Sbjct: 462  KQLSSNPWNEIE----AMFPAGTVISGVVTKITAFGAFVELQN-GIEGLIHVSELSDKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
              IE I   GE V  K++K+D + +++SL +K     N  D
Sbjct: 517  AKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNAYD 557



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 43/296 (14%)

Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
             EG IV G+I++ + G  GL+V IG   +               P S  D  +   L  Y
Sbjct: 132  EEGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY 175

Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
              G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE +S
Sbjct: 176  -VGKVCEFKILKINVERR---NVVVSRRELLEAERISKKAEL-------------IEQIS 218

Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
                 +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+
Sbjct: 219  IGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVD 277

Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
                RV + LK  +       E         G  V+G+I ++  YG FI IE   + GL 
Sbjct: 278  KEKGRVALGLKQKEHNPWEDIE----KKYPPGKRVLGKIVKLLPYGAFIEIEE-GIEGLI 332

Query: 1364 HVSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            HVSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 333  HVSEMSWVKNIVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 422
           G+ V  ++  + ++GA V+   G++ L  +  MS  + V  P + FK G  +   +L V 
Sbjct: 392 GLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVD 451

Query: 423 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
            +SK+IT+  K+        I + +   T   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEAMFPAGT---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           SEL   P  +   +  +G+ V  +++   P  ++++LS
Sbjct: 509 SELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLS 546



 Score = 45.1 bits (105), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 140/350 (40%), Gaps = 32/350 (9%)

Query: 369 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 426
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGR 282

Query: 427 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 486
           + +  K+        I   Y      L   G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPGKRVL---GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 487 DPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 541
                +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V+ 
Sbjct: 340 VKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVNA 397

Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 594
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGNSVEAVIL 448

Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
            +D ES  + L  K    N   ++    +     +V+ G V  I   G FV     + G 
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI---EAMFPAGTVISGVVTKITAFGAFVELQNGIEGL 505

Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
              S+  D   A +     +G++V + ++ ++ +  +++LS+K+    + 
Sbjct: 506 IHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNA 555



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 95/478 (19%), Positives = 193/478 (40%), Gaps = 72/478 (15%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           + ++++PG ++KG V+ ++    +V    G+K+   +P MSEF  +   +   +GAE+  
Sbjct: 45  SDNEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLVLGAEVEV 99

Query: 418 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
            +   + +  ++ ++ +K   + +   + ++ E     I  G IT+  K G  V    G+
Sbjct: 100 YLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GM 155

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED-- 530
           + F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+   
Sbjct: 156 EAFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVERRNVVVSRRELLEAERISKKAE 212

Query: 531 --DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 588
             + + +G    GVV  +T   V  ++   G       T+     + H + M        
Sbjct: 213 LIEQISIGEYRKGVVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------V 263

Query: 589 EFDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 643
           E +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G 
Sbjct: 264 ELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVLGKIVKLLPYGA 320

Query: 644 FVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           F+     + G    S+    +   D S+    G  V + +L +  + G+I+L LKQ+  +
Sbjct: 321 FIEIEEGIEGLIHVSEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHN 380

Query: 703 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 762
             D         +EEK                   + IG  +  ++    ++G  V  E 
Sbjct: 381 PWDN--------IEEK-------------------YPIGLHVNAEIKNLTNYGAFVELEP 413

Query: 763 ------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                 H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 414 GIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNE 471


>gi|218896527|ref|YP_002444938.1| 30S ribosomal protein S1 [Bacillus cereus G9842]
 gi|228900178|ref|ZP_04064410.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
 gi|402561411|ref|YP_006604135.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-771]
 gi|423361556|ref|ZP_17339058.1| ribosomal protein S1 [Bacillus cereus VD022]
 gi|423564107|ref|ZP_17540383.1| ribosomal protein S1 [Bacillus cereus MSX-A1]
 gi|434374536|ref|YP_006609180.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-789]
 gi|218545661|gb|ACK98055.1| ribosomal protein S1 [Bacillus cereus G9842]
 gi|228859448|gb|EEN03876.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
 gi|401079367|gb|EJP87665.1| ribosomal protein S1 [Bacillus cereus VD022]
 gi|401197598|gb|EJR04527.1| ribosomal protein S1 [Bacillus cereus MSX-A1]
 gi|401790063|gb|AFQ16102.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-771]
 gi|401873093|gb|AFQ25260.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-789]
          Length = 382

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHAAEKRISLSIKEALEENN 350



 Score = 43.9 bits (102), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 126/294 (42%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K +          SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHAAEKRISLSIKEALEENNVIEDYSQYEPNADSATFQLSDIIGEQLKKL 380



 Score = 40.8 bits (94), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 149/356 (41%), Gaps = 29/356 (8%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 529
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 587
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 644
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
           V  L  + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAL 346


>gi|403238099|ref|ZP_10916685.1| 30S ribosomal protein S1 [Bacillus sp. 10403023]
          Length = 378

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 104/186 (55%), Gaps = 6/186 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            ++ L    +++G V+ +T  G F+ +   +D  V +S LS  +V  P      G+++  +
Sbjct: 182  LDSLQVGAVLEGTVQRLTDFGAFVDIG-GIDGLVHISQLSHEHVSKPSDVVEEGQVIKVK 240

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            VLSV+  ++R+ +++K     T      N    + VGD+V G++KR+ S+G F+ +    
Sbjct: 241  VLSVDRDNERISLSVK----ETLPGPWENIAEKISVGDVVDGKVKRLVSFGAFVEV-LPG 295

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1418
            + GL H+S++S  H+     + + G++V+VK+L++++ ++RISL MK      + D  Q 
Sbjct: 296  VEGLVHISQISSKHIGTPHEVLKEGQEVQVKVLELNESEKRISLSMKELEVNVEEDYSQY 355

Query: 1419 SSEEES 1424
              ++E+
Sbjct: 356  QQQDET 361



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 44/65 (67%)

Query: 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1391
            L VGD++ G++ +VE   +F+++EN+ L G+  +SELS  HV+    +   GE++++ + 
Sbjct: 13   LQVGDVITGKVTKVEEKQVFVSVENSKLDGIIPISELSSLHVEKASDVVSEGEELELSVT 72

Query: 1392 KVDKE 1396
            KV++E
Sbjct: 73   KVEEE 77



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 10/170 (5%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
           G V++G V  +  FGA V   GG+  L  +  +S   + KP    + G  +  +VL V  
Sbjct: 188 GAVLEGTVQRLTDFGAFVDI-GGIDGLVHISQLSHEHVSKPSDVVEEGQVIKVKVLSVDR 246

Query: 424 -SKRITVTHKKTLVK--SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
            ++RI+++ K+TL      +A   S  +  D     G + ++   G FV    GV+G   
Sbjct: 247 DNERISLSVKETLPGPWENIAEKISVGDVVD-----GKVKRLVSFGAFVEVLPGVEGLVH 301

Query: 481 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
            S++       P  +   GQ V+ +++    + +RI+LS       V ED
Sbjct: 302 ISQISSKHIGTPHEVLKEGQEVQVKVLELNESEKRISLSMKELEVNVEED 351



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 143/359 (39%), Gaps = 44/359 (12%)

Query: 359 HSDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
           + +++ G V+ GKV  V+     V      +  + P+  +S   + K       G EL  
Sbjct: 10  YKELQVGDVITGKVTKVEEKQVFVSVENSKLDGIIPISELSSLHVEKASDVVSEGEELEL 69

Query: 418 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFV 469
            V        T   ++ L+ SK A+L+S  +A D L        +    +  + K G  V
Sbjct: 70  SV--------TKVEEEALILSKKAVLAS--KAWDDLEQKFNTGEVFEAVVKDVVKGGLVV 119

Query: 470 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 529
               GV+GF P S L  +   E  S Y      K   +  +   R  N   +     V E
Sbjct: 120 DL--GVRGFIPAS-LVENYYVEDFSDYKD----KALTVKVVELDREKNRVILSHRAVVEE 172

Query: 530 D---------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 580
           +         D +++G+++ G V  +T     V +   G   G +    L+   EH +  
Sbjct: 173 EQKNKKQHVLDSLQVGAVLEGTVQRLTDFGAFVDI---GGIDGLVHISQLSH--EHVSKP 227

Query: 581 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 639
             V++ G     ++L +D ++  + LS K +L    + +   A  I    VV G V  ++
Sbjct: 228 SDVVEEGQVIKVKVLSVDRDNERISLSVKETLPGPWENI---AEKISVGDVVDGKVKRLV 284

Query: 640 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
             G FV  L  + G    S+          +    GQ V+  +L++N    RI+LS+K+
Sbjct: 285 SFGAFVEVLPGVEGLVHISQISSKHIGTPHEVLKEGQEVQVKVLELNESEKRISLSMKE 343



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 111/281 (39%), Gaps = 45/281 (16%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 591
           +++G +++G V  V    V V V       G IP   L+  H+E A+    V+  G E  
Sbjct: 13  LQVGDVITGKVTKVEEKQVFVSV-ENSKLDGIIPISELSSLHVEKAS---DVVSEGEEL- 67

Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 651
           +L V   E   L+LS K  L + A          +   V    V ++++ G  V    R 
Sbjct: 68  ELSVTKVEEEALILSKKAVLASKA--WDDLEQKFNTGEVFEAVVKDVVKGGLVVDLGVR- 124

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
            GF P S   +    D S   Y  +++   +++++ E  R+ LS         +    ++
Sbjct: 125 -GFIPASLVENYYVEDFSD--YKDKALTVKVVELDREKNRVILS--HRAVVEEEQKNKKQ 179

Query: 712 HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 771
           H L                     +   +G+V+EG V    DFG   +F +   + G + 
Sbjct: 180 HVL---------------------DSLQVGAVLEGTVQRLTDFG---AFVDIGGIDGLVH 215

Query: 772 HHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLK 805
             QL+          VE G VI+  +L V +    + LS+K
Sbjct: 216 ISQLSHEHVSKPSDVVEEGQVIKVKVLSVDRDNERISLSVK 256



 Score = 40.8 bits (94), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 306 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLVFTHSDV 362
           V IS ++ E V K     +EG  ++V++L   R  E ++  + +     +E +      +
Sbjct: 214 VHISQLSHEHVSKPSDVVEEGQVIKVKVLSVDRDNERISLSVKETLPGPWENIA---EKI 270

Query: 363 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
             G VV GKV  + SFGA V+   GV+ L  +  +S   I  P +  K G E+  +VL +
Sbjct: 271 SVGDVVDGKVKRLVSFGAFVEVLPGVEGLVHISQISSKHIGTPHEVLKEGQEVQVKVLEL 330

Query: 423 K--SKRITVTHKK 433
               KRI+++ K+
Sbjct: 331 NESEKRISLSMKE 343


>gi|302550706|ref|ZP_07303048.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736]
 gi|302468324|gb|EFL31417.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736]
          Length = 497

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|297571464|ref|YP_003697238.1| RNA binding S1 domain-containing protein [Arcanobacterium
            haemolyticum DSM 20595]
 gi|296931811|gb|ADH92619.1| RNA binding S1 domain protein [Arcanobacterium haemolyticum DSM
            20595]
          Length = 489

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 139/287 (48%), Gaps = 42/287 (14%)

Query: 1123 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLS 1181
            I E D +V G + +++ G  GL++ IG   +      E++ +    P  G +        
Sbjct: 118  IKEADGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE-------- 167

Query: 1182 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1241
                   ++ K++E+ +      +V LS RS L+    T S   ST ++T          
Sbjct: 168  -------IEAKIIELDKNRN---NVVLSRRSWLE---QTQSEVRSTFLNT---------- 204

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L    +  G + ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL 
Sbjct: 205  LQKGQVRDGVISSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGTPVTVEVLE 263

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLV 1360
            V+   +RV ++LK +      +      +  H +  +V G++ ++  +G F+ +E+  + 
Sbjct: 264  VDMDRERVSLSLKAT-----QEDPWQTFARTHAISQVVPGKVTKLVPFGAFVRVED-GIE 317

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            GL H+SEL++ HVD  E + + G+ V VK++ +D ++RRISL +K +
Sbjct: 318  GLVHISELAQRHVDLPEQVVKVGDDVFVKVIDIDLDRRRISLSLKQA 364



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           ++ G V  G + ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   VL 
Sbjct: 205 LQKGQVRDGVISSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGTPVTVEVLE 263

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
           V    +R++++ K T          ++A +    +  G +TK+   G FVR  +G++G  
Sbjct: 264 VDMDRERVSLSLKATQEDPWQTFARTHAISQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 320

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 321 HISELAQRHVDLPEQVVKVGDDVFVKVIDIDLDRRRISLSL 361


>gi|228476148|ref|ZP_04060856.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119]
 gi|228269971|gb|EEK11451.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119]
          Length = 393

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 96/174 (55%), Gaps = 6/174 (3%)

Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
            ++ L+   +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE    +G+ V  +
Sbjct: 189  LDSLNEGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVQSPEDVVSVGQEVDVK 247

Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
            V SVE  ++R+ +++K     T      N     H  D++ G++ R+ ++G F+ I    
Sbjct: 248  VKSVEKDTERISLSIKD----TLPTPFENIKGKFHENDVIEGKVIRLANFGAFVEIA-PG 302

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            + GL H+SE++  H+     +   G++V VKIL +D+E  RISL +K++    D
Sbjct: 303  VQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDEENERISLSIKATLPNED 356



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
           +D+K G  V GKV  V+    +V   G     + P+  +S   I  P +    G E+   
Sbjct: 12  NDIKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAY 71

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 72  VTKIEIDEENESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDV--G 129

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K    +E+D+ K
Sbjct: 130 QRGFVPASLISTD-FIEDFSVFE-GQTIRLKVEELDPENNRVILS--RKAVEQAENDVKK 185

Query: 535 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
                    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 186 ASLLDSLNEGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVQSPEDVVSV 240

Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
           G E D ++  ++ ++  + LS K +L    + +       H N V+ G V  +   G FV
Sbjct: 241 GQEVDVKVKSVEKDTERISLSIKDTLPTPFENI---KGKFHENDVIEGKVIRLANFGAFV 297

Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
                + G    S+         S+    GQ V   IL ++ E  RI+LS+K + 
Sbjct: 298 EIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDEENERISLSIKATL 352



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 92/170 (54%), Gaps = 10/170 (5%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
            E L  + +++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  
Sbjct: 104  EKLDNDEVIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFEGQTIRL 157

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
            +V  ++P + RV ++ K  +       + + L +L+ GD++ G++ R+ ++G F+ I   
Sbjct: 158  KVEELDPENNRVILSRKAVEQAENDVKKASLLDSLNEGDVIKGKVARLTNFGAFVDIGGV 217

Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            +  GL HVSELS +HV + E +   G++V VK+  V+K+  RISL +K +
Sbjct: 218  D--GLVHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDTERISLSIKDT 265



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 116/290 (40%), Gaps = 55/290 (18%)

Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
           +K G  V+G V  V    VVV++    Y+ G IP   L+ H  H      +I  G E + 
Sbjct: 14  IKEGDKVTGKVQQVEDKQVVVHIDGAKYN-GIIPISQLSTH--HIENPSEIISEGDEIEA 70

Query: 593 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 643
            +    +D E+     S  Y L  S +QL ++ S+      +  + V+   V  +++ G 
Sbjct: 71  YVTKIEIDEENE----SGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGL 124

Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K    + 
Sbjct: 125 VVDVGQR--GFVPASLISTDFIEDFS--VFEGQTIRLKVEELDPENNRVILSRKAVEQAE 180

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
            D           +K ++L S                G VI+GKV    +FG  V     
Sbjct: 181 NDV----------KKASLLDSLNE-------------GDVIKGKVARLTNFGAFVDI--- 214

Query: 764 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
             V G +   +L+   V+S         DV    + VD+ +K+V  D  R
Sbjct: 215 GGVDGLVHVSELSHEHVQSPE-------DVVSVGQEVDVKVKSVEKDTER 257



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 162/393 (41%), Gaps = 80/393 (20%)

Query: 96  VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 150
           ++EG  +T  V+ +ED   ++H     + G +P + L+    EN    +  G  ++  V 
Sbjct: 14  IKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSEIISEGDEIEAYVT 73

Query: 151 -----------------RSIDRTRKVVYLSS--DPDTVSKC-VTKDLKG-ISIDL----L 185
                            R ++  +   YL    D D V +  VT+ +KG + +D+     
Sbjct: 74  KIEIDEENESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVVKGGLVVDVGQRGF 133

Query: 186 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 245
           VP  ++ST           +   + F G      ++   P  N             R++ 
Sbjct: 134 VPASLISTD---------FIEDFSVFEGQTIRLKVEELDPENN-------------RVIL 171

Query: 246 VDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 305
              + +AV    N   +   +    +  GD+  + KV R+    G  +DI          
Sbjct: 172 ---SRKAVEQAEND--VKKASLLDSLNEGDVI-KGKVARL-TNFGAFVDIGGVD----GL 220

Query: 306 VTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLV--FTHS 360
           V +S+++ E V+  E     G  V V++    +  E ++  I     + FE +   F  +
Sbjct: 221 VHVSELSHEHVQSPEDVVSVGQEVDVKVKSVEKDTERISLSIKDTLPTPFENIKGKFHEN 280

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           DV     ++GKVI + +FGA V+   GV+ L  +  ++   I  P +  + G ++  ++L
Sbjct: 281 DV-----IEGKVIRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKIL 335

Query: 421 GV--KSKRITVTHKKTL-----VKSKLAILSSY 446
           G+  +++RI+++ K TL     ++S  A   SY
Sbjct: 336 GIDEENERISLSIKATLPNEDVIESDEATTQSY 368


>gi|206970547|ref|ZP_03231499.1| ribosomal protein S1 [Bacillus cereus AH1134]
 gi|206734183|gb|EDZ51353.1| ribosomal protein S1 [Bacillus cereus AH1134]
          Length = 382

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 180/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGCVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 43.9 bits (102), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|148270479|ref|YP_001244939.1| RNA-binding S1 domain-containing protein [Thermotoga petrophila
           RKU-1]
 gi|147736023|gb|ABQ47363.1| RNA binding S1 domain protein [Thermotoga petrophila RKU-1]
          Length = 543

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 112/531 (21%), Positives = 222/531 (41%), Gaps = 57/531 (10%)

Query: 311 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 370
           V E E+ K   +YK G  + ++IL   + E       +    + L     D +    VK 
Sbjct: 49  VPENELIKSLDEYKVGENLTLQILNLNYEERSILSERRPVLRKTLEELRKDYEEKKPVKA 108

Query: 371 KVIAVDSFGAIVQFPGGVKALCPLPH--MSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 428
           ++++    G  V   G V A  P  H  +   + + P K+ +V   ++  ++  K     
Sbjct: 109 RIVSQTKGGYNVLLKGVVSAFLPGSHSLLRRNDPI-PEKEIEV---IILEMVQTKRGSRI 164

Query: 429 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 488
           V  ++ L   K+    S  +  D  I  G +  I   G  V    G++GF P+SEL  D 
Sbjct: 165 VVSRRALQDRKIEEFFSEKKVGD--IIEGTVKGISNAGVEVEISEGIRGFIPKSELSYDN 222

Query: 489 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSLVSGVVDVV 546
              P  +   GQ +  +I+      + + LS   +M        +   +G +V G  +V+
Sbjct: 223 RISPEDVVKPGQNITAKIIELDERKKNVILSLKRLMPDPWEKVKEKYPVGKVVGG--EVI 280

Query: 547 TPNAVVVYVIAKGYSKGTIPTEHL-----ADHLEHATVMKSVIKPGYEFDQLLVLDNESS 601
           + ++   +V  +   +G +P   +       +LE    +  ++K      +++ +D E+ 
Sbjct: 281 SIHSFGFFVRLEPGVEGLVPRSEVFWGNARKNLEEVVSVGDLVKV-----EVINVDKENR 335

Query: 602 NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 661
            L LS + +  +  + +       + N+VV G V  II+ G FV     + GF P S+  
Sbjct: 336 KLTLSYRKAKGDPWENI---EDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEIS 392

Query: 662 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 721
             +  +  +   +G+ V+  IL ++ E  +ITLS++++  +  + +              
Sbjct: 393 WKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIRRTQENPWERAL------------- 439

Query: 722 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 781
                    ELK        S++ G +    + GV+V  E++ DV GF+ ++ L  +  E
Sbjct: 440 --------KELK------PDSIVRGTIERIVNSGVIVKVEKY-DVEGFVPNNHLV-SEPE 483

Query: 782 SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK 832
           +G ++   +L +   E       + +  ++  E   N +  KK  ++E+S+
Sbjct: 484 TGKILNLVVLRIDPDEV---FGGRMILSEKRYEERKNIEEYKKMVEKESSQ 531



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 125/518 (24%), Positives = 212/518 (40%), Gaps = 69/518 (13%)

Query: 94  ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRS 152
           E  + G ++T  V   ED G ++ FG  S  GF+P N L ++     V   L LQ  + +
Sbjct: 17  EEFRRGQIVTGVVIGKEDGGVVVDFGGKS-EGFVPENELIKSLDEYKVGENLTLQ--ILN 73

Query: 153 IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV--QSILENGVMLSFLTY 210
           ++   + + LS     + K + +  K       V   +VS      ++L  GV+ +FL  
Sbjct: 74  LNYEERSI-LSERRPVLRKTLEELRKDYEEKKPVKARIVSQTKGGYNVLLKGVVSAFLP- 131

Query: 211 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-- 268
             G+  +    +  P           K++   IL +  T R   + ++   L +R     
Sbjct: 132 --GSHSLLRRNDPIP----------EKEIEVIILEMVQTKRGSRIVVSRRALQDRKIEEF 179

Query: 269 -SHVKVGDIYD------QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 321
            S  KVGDI +       +  V V+   G+   IP + +S    ++  DV          
Sbjct: 180 FSEKKVGDIIEGTVKGISNAGVEVEISEGIRGFIPKSELSYDNRISPEDVV--------- 230

Query: 322 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 381
             K G  +  +I+     +      LK    +           G VV G+VI++ SFG  
Sbjct: 231 --KPGQNITAKIIELDERKKNVILSLKRLMPDPWEKVKEKYPVGKVVGGEVISIHSFGFF 288

Query: 382 VQFPGGVKALCPLPHM-------SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 432
           V+   GV+ L P   +       +  E+V  G   KV       V+ V  +++++T++++
Sbjct: 289 VRLEPGVEGLVPRSEVFWGNARKNLEEVVSVGDLVKV------EVINVDKENRKLTLSYR 342

Query: 433 KTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 488
           K       A    +    DR     +  G +T I K G FV    GV+GF P SE+    
Sbjct: 343 K-------AKGDPWENIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKR 395

Query: 489 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--VKLGSLVSGVVDVV 546
             EP  +  +G+ VK +I+     +R+I LS         E  L  +K  S+V G ++ +
Sbjct: 396 IDEPGEILKIGEKVKVKILKIDKENRKITLSIRRTQENPWERALKELKPDSIVRGTIERI 455

Query: 547 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 584
             + V+V V  K   +G +P  HL    E   ++  V+
Sbjct: 456 VNSGVIVKV-EKYDVEGFVPNNHLVSEPETGKILNLVV 492



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 139/300 (46%), Gaps = 46/300 (15%)

Query: 1114 ISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
            + +  ++ F  E   GDI+ G +  I +   G+ V+I   + G +  +EL          
Sbjct: 171  LQDRKIEEFFSEKKVGDIIEGTVKGISNA--GVEVEISEGIRGFIPKSEL---------- 218

Query: 1171 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1230
             YD  +  P      GQ +  K++E+    +   +V LSL+             L  D  
Sbjct: 219  SYD-NRISPEDVVKPGQNITAKIIELDERKK---NVILSLKR------------LMPD-- 260

Query: 1231 TPGKHLEKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKE 1288
                  EK+++  P   +V G V ++ S G F+ L   ++  V  S +  G   ++ E+ 
Sbjct: 261  ----PWEKVKEKYPVGKVVGGEVISIHSFGFFVRLEPGVEGLVPRSEVFWGNARKNLEEV 316

Query: 1289 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVES 1347
              +G LV   V++V+  ++++     T   R A      N+ + + V ++V G++  +  
Sbjct: 317  VSVGDLVKVEVINVDKENRKL-----TLSYRKAKGDPWENIEDRYNVNNVVTGKVTGIIK 371

Query: 1348 YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
             G F+ +E   + G   VSE+S   +D    I + GEKVKVKILK+DKE R+I+L ++ +
Sbjct: 372  QGAFVELEE-GVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIRRT 430



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            I++G VK +++ G  + +S  +   +  S LS     SPE     G+ +  +++ ++   
Sbjct: 188  IIEGTVKGISNAGVEVEISEGIRGFIPKSELSYDNRISPEDVVKPGQNITAKIIELDERK 247

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            K V ++LK    R              VG +V G++  + S+G F+ +E   + GL   S
Sbjct: 248  KNVILSLK----RLMPDPWEKVKEKYPVGKVVGGEVISIHSFGFFVRLE-PGVEGLVPRS 302

Query: 1367 ELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
            E+   +   N+E +   G+ VKV+++ VDKE R+++L    SY K   D
Sbjct: 303  EVFWGNARKNLEEVVSVGDLVKVEVINVDKENRKLTL----SYRKAKGD 347


>gi|423392104|ref|ZP_17369330.1| ribosomal protein S1 [Bacillus cereus BAG1X1-3]
 gi|401637937|gb|EJS55690.1| ribosomal protein S1 [Bacillus cereus BAG1X1-3]
          Length = 382

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEENDLVLSKRAVDAEKAWVELQEKFNSGYVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 43.9 bits (102), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|291440269|ref|ZP_06579659.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
 gi|291343164|gb|EFE70120.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
          Length = 497

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|229155163|ref|ZP_04283275.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
 gi|228628290|gb|EEK85005.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
          Length = 382

 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 180/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEIGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 45.1 bits (105), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   IG+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380



 Score = 41.2 bits (95), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 29/356 (8%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
             +V+ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKVIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 529
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 587
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 644
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
           V  L  + G    S+  +    + ++   +GQ V+  +L+V+    RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKVKVLEVHVAEKRISLSIKEAL 346


>gi|332982232|ref|YP_004463673.1| hydroxymethylbutenyl pyrophosphate reductase [Mahella australiensis
            50-1 BON]
 gi|332699910|gb|AEE96851.1| hydroxymethylbutenyl pyrophosphate reductase [Mahella australiensis
            50-1 BON]
          Length = 718

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 113/211 (53%), Gaps = 22/211 (10%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
            + G VKNVT  G F+ +   +D  + + +LS G ++ P +    G  V   VLS +  +K
Sbjct: 516  ITGKVKNVTDFGAFVDIG-GVDGLIHIGDLSWGRIKHPSEVVKPGDTVDVIVLSADKENK 574

Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
            ++ + LK    +   Q     +    VGDIV G++  + S+G F+ +E   L GL H+S+
Sbjct: 575  KLSLGLK----QLQPQPWDYAMDKYKVGDIVRGKVVSITSFGAFVELE-PGLEGLVHISQ 629

Query: 1368 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            ++   ++ +E + + G++V+VKI+ V  E+ RISL +K +  + D+DN   +SEE+  +A
Sbjct: 630  VANKRINKVEDVLKVGDEVQVKIMDVRPEEHRISLSIKEA--QGDSDN---NSEEKWSKA 684

Query: 1428 IEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1458
                   +R     ++SV+ QD      DGG
Sbjct: 685  -----KADREEKNHSTSVSHQD------DGG 704



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 144/361 (39%), Gaps = 39/361 (10%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V GKV +V     IV   G    + P   M   E V P + F +  ++  +V     
Sbjct: 338 GQMVSGKVASVSDSEIIVSLGGKQDGVIPREEMGLDEGVSPSEVFHIDDDIEAQV----- 392

Query: 425 KRITVTHKKTLVKSKLAIL--SSYAEATDRLITHGWITKIEKH---GCFVRFYNGVQGFA 479
           K+     +  L+ S+  +L   ++A   D   T   IT + K    G  +   NG+  F 
Sbjct: 393 KKTARNEEDNLILSRKPLLLRKAWAAIEDAYNTGNNITGVVKEVIKGGILLDVNGIDVFV 452

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL------V 533
           P S +  D   +  ++  VG+ ++ +I+   P  RR   S      +            +
Sbjct: 453 PASHVS-DRYVKDLNVL-VGKEMEVKIIEITPKRRRAVGSHKAVIEQEKWQKEEEAWANI 510

Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 589
           + G  ++G V  VT     V +   G   G I   H+ D     ++H +    V+KPG  
Sbjct: 511 REGLRITGKVKNVTDFGAFVDI---GGVDGLI---HIGDLSWGRIKHPS---EVVKPGDT 561

Query: 590 FDQL-LVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFVR 646
            D + L  D E+  L L  K       Q  P D +        +V G V +I   G FV 
Sbjct: 562 VDVIVLSADKENKKLSLGLK-----QLQPQPWDYAMDKYKVGDIVRGKVVSITSFGAFVE 616

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 706
               L G    S+  + +   +     VG  V+  I+DV  E  RI+LS+K++   S + 
Sbjct: 617 LEPGLEGLVHISQVANKRINKVEDVLKVGDEVQVKIMDVRPEEHRISLSIKEAQGDSDNN 676

Query: 707 S 707
           S
Sbjct: 677 S 677



 Score = 40.8 bits (94), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 363 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
           K G +V+GKV+++ SFGA V+   G++ L  +  ++   I K     KVG E+  +++ V
Sbjct: 596 KVGDIVRGKVVSITSFGAFVELEPGLEGLVHISQVANKRINKVEDVLKVGDEVQVKIMDV 655

Query: 423 KSK--RITVTHKKT 434
           + +  RI+++ K+ 
Sbjct: 656 RPEEHRISLSIKEA 669


>gi|310658769|ref|YP_003936490.1| 30S ribosomal protein S1 [[Clostridium] sticklandii]
 gi|308825547|emb|CBH21585.1| 30S ribosomal protein S1 [[Clostridium] sticklandii]
          Length = 358

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 95/168 (56%), Gaps = 6/168 (3%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E +E +    + +G +K++   G F+ +       V +S +S    E  ++++ IG+ + 
Sbjct: 181  EVVEKIKEGEVFEGVIKDIKDYGIFVDIGG-FTGLVHISEISWDRSEKIKEQYKIGEKIN 239

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
             +V+S +  S+R+ +++K+     AS      +SN  VGDIV G++K ++ YG FI +  
Sbjct: 240  VQVISFDQASERLSLSIKS----LASHPWDEFISNNKVGDIVTGEVKNIKEYGAFINLHP 295

Query: 1357 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404
            T + G  H+S LS D + N   I + G+KV+VKI+ +++E ++I L +
Sbjct: 296  T-VDGFVHISNLSSDFIKNPNEILKVGQKVEVKIISIEQENKKIELSL 342



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 2/116 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            +GK     ++ ++P  +R+  + K    +     +   +  +  G++  G IK ++ YG+
Sbjct: 145  LGKTFEVEIIDIDPKKRRLIFSRKNILLKQQEALKTEVVEKIKEGEVFEGVIKDIKDYGI 204

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            F+ I      GL H+SE+S D  + I+  Y+ GEK+ V+++  D+   R+SL +KS
Sbjct: 205  FVDI--GGFTGLVHISEISWDRSEKIKEQYKIGEKINVQVISFDQASERLSLSIKS 258



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 6/172 (3%)

Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
           +K G V +G +  +  +G  V   GG   L  +  +S     K  +++K+G ++  +V+ 
Sbjct: 186 IKEGEVFEGVIKDIKDYGIFVDI-GGFTGLVHISEISWDRSEKIKEQYKIGEKINVQVIS 244

Query: 422 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
               S+R++++ K +L         S  +  D  I  G +  I+++G F+  +  V GF 
Sbjct: 245 FDQASERLSLSIK-SLASHPWDEFISNNKVGD--IVTGEVKNIKEYGAFINLHPTVDGFV 301

Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 531
             S L  D    P+ +  VGQ V+ +I+S    +++I LS +++   V+E++
Sbjct: 302 HISNLSSDFIKNPNEILKVGQKVEVKIISIEQENKKIELSLILEDKEVAEEE 353



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 46/77 (59%)

Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            IV G VKN+   G FI L   +D  V +SNLS  ++++P +   +G+ V  +++S+E  +
Sbjct: 276  IVTGEVKNIKEYGAFINLHPTVDGFVHISNLSSDFIKNPNEILKVGQKVEVKIISIEQEN 335

Query: 1307 KRVEVTLKTSDSRTASQ 1323
            K++E++L   D   A +
Sbjct: 336  KKIELSLILEDKEVAEE 352



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 120/282 (42%), Gaps = 41/282 (14%)

Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 590
           D VK+G ++   V  V  NA  +  + K   +G +P  H+        V+KS +   +E 
Sbjct: 94  DEVKVGDVLQ--VKAVEFNAKGLICVYKTALRGFMPLSHIELKFIGEDVLKSYLGKTFEV 151

Query: 591 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLG 649
            +++ +D +   L+ S K  L+   + L ++    I    V  G + +I + G FV  +G
Sbjct: 152 -EIIDIDPKKRRLIFSRKNILLKQQEALKTEVVEKIKEGEVFEGVIKDIKDYGIFVD-IG 209

Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
             TG    S+    +   + + Y +G+ +   ++  +  + R++LS+K      + AS  
Sbjct: 210 GFTGLVHISEISWDRSEKIKEQYKIGEKINVQVISFDQASERLSLSIK------SLASHP 263

Query: 710 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 769
            + F+   K                     +G ++ G+V    ++G  ++   H  V GF
Sbjct: 264 WDEFISNNK---------------------VGDIVTGEVKNIKEYGAFINL--HPTVDGF 300

Query: 770 ITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSL 804
           +    L+   +++       G  ++  I+ + +  + ++LSL
Sbjct: 301 VHISNLSSDFIKNPNEILKVGQKVEVKIISIEQENKKIELSL 342



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
           +VK G V++ K +  ++ G I  +   ++   PL H+    I +   K  +G      ++
Sbjct: 95  EVKVGDVLQVKAVEFNAKGLICVYKTALRGFMPLSHIELKFIGEDVLKSYLGKTFEVEII 154

Query: 421 GV--KSKRITVTHKKTLVKSKLAILSSYAEAT-DRLITHGWITKIEKHGCFVRFYNGVQG 477
            +  K +R+  + K  L+K + A+ +   E   +  +  G I  I+ +G FV    G  G
Sbjct: 155 DIDPKKRRLIFSRKNILLKQQEALKTEVVEKIKEGEVFEGVIKDIKDYGIFVDI-GGFTG 213

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV---K 534
               SE+  D   +    Y +G+ +  +++S   AS R++LS     +    D+ +   K
Sbjct: 214 LVHISEISWDRSEKIKEQYKIGEKINVQVISFDQASERLSLSIKSLASH-PWDEFISNNK 272

Query: 535 LGSLVSGVV 543
           +G +V+G V
Sbjct: 273 VGDIVTGEV 281



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 144/338 (42%), Gaps = 26/338 (7%)

Query: 94  ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSI 153
           + V +G ++   V   +D  + +     +  G LP++ + ++  I V   + +Q  V  I
Sbjct: 17  QEVYKGSIVKGRVMIEKDDSFYIDLNYKT-DGILPKDQVIDSETIKVGDEIEVQ--VVKI 73

Query: 154 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 213
           D+    + LS       K    + K    D +  G ++  +       G++  + T   G
Sbjct: 74  DKNTGDILLS-------KKRVDEFK--VWDEVKVGDVLQVKAVEFNAKGLICVYKTALRG 124

Query: 214 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP-----P 268
            + + H++  F   +    Y   K     I+ +DP  R +  +    LL  +        
Sbjct: 125 FMPLSHIELKFIGEDVLKSY-LGKTFEVEIIDIDPKKRRLIFSRKNILLKQQEALKTEVV 183

Query: 269 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 328
             +K G++++   V++  +  G+ +DI          V IS+++ +   K++++YK G  
Sbjct: 184 EKIKEGEVFEG--VIKDIKDYGIFVDIGGFT----GLVHISEISWDRSEKIKEQYKIGEK 237

Query: 329 VRVRILGFRHL-EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 387
           + V+++ F    E L+  I   ++     F  S+ K G +V G+V  +  +GA +     
Sbjct: 238 INVQVISFDQASERLSLSIKSLASHPWDEFI-SNNKVGDIVTGEVKNIKEYGAFINLHPT 296

Query: 388 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 425
           V     + ++S   I  P +  KVG ++  +++ ++ +
Sbjct: 297 VDGFVHISNLSSDFIKNPNEILKVGQKVEVKIISIEQE 334


>gi|227505035|ref|ZP_03935084.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
 gi|227198399|gb|EEI78447.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
          Length = 486

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 175/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAVEELHAKEEPVTGTVIEVVKG--GLIL 138

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +   +P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG---------------QELEAKIIELDKQRN---N 180

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAFLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 282  WRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVTVGQ 340

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +V VK++ +D E+RRISL +K +
Sbjct: 341  EVMVKVIDIDLERRRISLSVKQA 363



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           ++G    SEL       P  +  VGQ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLS 359



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +     A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAVEEL-HAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+          +   VGQ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLSVKQA-----DEDYTE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDPETNEWLEGY 405


>gi|302561209|ref|ZP_07313551.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000]
 gi|302478827|gb|EFL41920.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000]
          Length = 497

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|281413894|ref|ZP_06245636.1| 30S ribosomal protein S1 [Micrococcus luteus NCTC 2665]
          Length = 413

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 151/327 (46%), Gaps = 48/327 (14%)

Query: 1083 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1142
            T   L + KE K  RL+L   +        DI     +    E  +V G + +++ G  G
Sbjct: 12   TVEALVLTKEDKEGRLILSKKRAQYERAWGDI-----EKIKEEDGVVEGTVIEVVKG--G 64

Query: 1143 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202
            L++ IG   +      E++ +    P  G               Q ++ K++E+ +    
Sbjct: 65   LILDIGLRGFLPASLVEMRRVRDLAPYIG---------------QKLEAKIIELDKNRN- 108

Query: 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1262
              +V LS R+ L+   S   S+              +  L    +  G V ++ + G F+
Sbjct: 109  --NVVLSRRAWLEQTQSEVRSNF-------------LHKLEKGQVRNGTVSSIVNFGAFV 153

Query: 1263 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322
             L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK      A+
Sbjct: 154  DLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLK------AT 206

Query: 1323 QSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
            Q +   L +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+  H+D  E + 
Sbjct: 207  QEDPWQLFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELASRHIDTAEQVV 265

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKSS 1407
               +++ VK++ +D E+RRISL +K +
Sbjct: 266  SVNDELFVKVIDIDLERRRISLSLKQA 292



 Score = 48.5 bits (114), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 3/164 (1%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 129 FLHK-LEKGQVRNGTVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 186

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
             VL V   R  V+      +     L +   A  +++  G +TK+   G FVR  +G++
Sbjct: 187 VEVLEVDMDRERVSLSLKATQEDPWQLFARTHALGQVVP-GKVTKLVPFGAFVRVEDGIE 245

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
           G    SEL          +  V   +  +++      RRI+LS 
Sbjct: 246 GLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSL 289



 Score = 42.4 bits (98), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 135/328 (41%), Gaps = 50/328 (15%)

Query: 490 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVV 546
            +P  +  VG  V+  +++      R+ LS        +  D+ K+     +V G V  V
Sbjct: 1   MDPDEVVAVGDTVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKEEDGVVEGTVIEV 60

Query: 547 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 605
               +++ +  +G+    +P    A  +E   V       G + + +++ LD   +N++L
Sbjct: 61  VKGGLILDIGLRGF----LP----ASLVEMRRVRDLAPYIGQKLEAKIIELDKNRNNVVL 112

Query: 606 SAKYSLINSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664
           S +  L  +  ++ S+  H +    V +G V +I+  G FV  LG + G    S+     
Sbjct: 113 SRRAWLEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVD-LGGVDGLVHVSELSWKH 171

Query: 665 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS 724
               S+   VGQ V   +L+V+ +  R++LSLK +                +E    L +
Sbjct: 172 IDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLKAT----------------QEDPWQLFA 215

Query: 725 SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGS 784
             H            +G V+ GKV +   FG  V  E+   + G +   +LA   +++  
Sbjct: 216 RTH-----------ALGQVVPGKVTKLVPFGAFVRVEDG--IEGLVHISELASRHIDTAE 262

Query: 785 VIQAA-------ILDVAKAERLVDLSLK 805
            + +        ++D+    R + LSLK
Sbjct: 263 QVVSVNDELFVKVIDIDLERRRISLSLK 290


>gi|228984676|ref|ZP_04144849.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar tochigiensis
            BGSC 4Y1]
 gi|228775070|gb|EEM23463.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar tochigiensis
            BGSC 4Y1]
          Length = 382

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 126/294 (42%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +                     + T    LS     PG    
Sbjct: 238  -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K +          SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVIEDYSQYEPNADSATFQLSDIIGEQLKKL 380



 Score = 40.4 bits (93), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 29/356 (8%)

Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
             +V+ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKVIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 529
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 587
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 644
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
           V  L  + G    S+  +    + ++   +GQ V+  +L+V+    RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAL 346


>gi|402815226|ref|ZP_10864819.1| putative 30S ribosomal protein S1 [Paenibacillus alvei DSM 29]
 gi|402507597|gb|EJW18119.1| putative 30S ribosomal protein S1 [Paenibacillus alvei DSM 29]
          Length = 404

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 175/389 (44%), Gaps = 70/389 (17%)

Query: 1030 GQRVTGYVYKVDNEWALLTIS---------RHLKAQLFILDSAYEPSELQEFQRRFHIGK 1080
            G  V G + K+D+  A+++I          R L A    +D+A +  E         +G+
Sbjct: 28   GDTVKGTIVKIDDNQAVVSIGYKYDGIIPVRELTA--VSVDNAADVVE---------VGQ 76

Query: 1081 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILS 1138
             V   V+SI+ EK+  RLVL       S + VD     D+MQ      D+    ++ ++ 
Sbjct: 77   EVECKVVSIDDEKE--RLVL-------SKRQVDSEQAWDDMQKHFEAQDVFEVTVADVVK 127

Query: 1139 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            G  G+V  +G   +               P S  +    +  S Y +G+ ++ KV EI R
Sbjct: 128  G--GVVADVGVRAF--------------IPASMVERHFVEDFSDY-KGRTLRVKVKEIDR 170

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                     LS +  L+     N              +  +E L+    ++G V+ +T  
Sbjct: 171  ENNKLI---LSQKDVLEAEFEANK-------------IRVMEGLTEGQELEGTVQRLTQF 214

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S L+  +VE P      G+ V  +VL V+P + ++ +++K +  
Sbjct: 215  GAFVDVG-GVDGLVHVSELAWNHVEKPSDVVSEGQKVKVKVLKVDPANGKISLSIKATQP 273

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                Q+     SN+  GDI+ G++KR+  +G F+ +    + GL H+S+++  HV     
Sbjct: 274  GPWEQAS----SNIKTGDILTGEVKRLVDFGAFVEVA-PGVEGLVHISQIAHRHVATPYE 328

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + + G+ V+VK+L     ++R+SL +K +
Sbjct: 329  VLKQGQTVQVKVLDFSPAEKRVSLSIKET 357



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 1318 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
            + TASQ  + N+ +L  GD V G I +++     ++I      G+  V EL+   VDN  
Sbjct: 11   AETASQEALENIVSLKKGDTVKGTIVKIDDNQAVVSI-GYKYDGIIPVRELTAVSVDNAA 69

Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
             +   G++V+ K++ +D EK R+ L  +    +   D++Q
Sbjct: 70   DVVEVGQEVECKVVSIDDEKERLVLSKRQVDSEQAWDDMQ 109


>gi|148543994|ref|YP_001271364.1| 30S ribosomal protein S1 [Lactobacillus reuteri DSM 20016]
 gi|184153388|ref|YP_001841729.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
 gi|194467922|ref|ZP_03073908.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227364907|ref|ZP_03848952.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
 gi|227543421|ref|ZP_03973470.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
 gi|325682468|ref|ZP_08161985.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
 gi|338204370|ref|YP_004650515.1| 30S ribosomal protein S1 [Lactobacillus reuteri SD2112]
 gi|148531028|gb|ABQ83027.1| SSU ribosomal protein S1P [Lactobacillus reuteri DSM 20016]
 gi|183224732|dbj|BAG25249.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
 gi|194452775|gb|EDX41673.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
 gi|227070054|gb|EEI08432.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
 gi|227186600|gb|EEI66671.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
 gi|324978307|gb|EGC15257.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
 gi|336449610|gb|AEI58225.1| 30S ribosomal protein S1 [Lactobacillus reuteri SD2112]
          Length = 416

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 91/166 (54%), Gaps = 6/166 (3%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            +L P  +V+G V  +T+ G FI L   +D  V +S +S  +V+ P      G+ V  +VL
Sbjct: 198  ELQPGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKVL 256

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            SV+P  +R+ +++K +        E        V  ++ G +KR+ S+G F+ +    + 
Sbjct: 257  SVDPERERISLSIKQTLPGPWDDIE----EKAPVDSVLTGTVKRLTSFGAFVEV-FPGVE 311

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
            GL H+S++S  H+     + + G++V+VK++ VD E +R+ L MK+
Sbjct: 312  GLVHISQISHKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSMKA 357



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 1272 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1331
            V  S ++D YVE    +F  G+ +  +++ +EP   R+ ++ K        ++     + 
Sbjct: 141  VPASMITDHYVEDL-NQFK-GQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAE 198

Query: 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1391
            L  GD+V G++ R+ ++G FI +   +  GL HVSE+S DHVD    +  AG+ VKVK+L
Sbjct: 199  LQPGDVVEGKVARMTNFGAFIDLGGVD--GLVHVSEISYDHVDKPSDVLTAGQDVKVKVL 256

Query: 1392 KVDKEKRRISLGMKSS 1407
             VD E+ RISL +K +
Sbjct: 257  SVDPERERISLSIKQT 272



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           ++++PG VV+GKV  + +FGA +   GGV  L  +  +S   + KP      G ++  +V
Sbjct: 197 AELQPGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKV 255

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V  + +RI+++ K+TL      I        D ++T G + ++   G FV  + GV+G
Sbjct: 256 LSVDPERERISLSIKQTLPGPWDDI--EEKAPVDSVLT-GTVKRLTSFGAFVEVFPGVEG 312

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               S++       P+ +   GQ V+ ++++  P  +R+ LS 
Sbjct: 313 LVHISQISHKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSM 355



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 137/350 (39%), Gaps = 55/350 (15%)

Query: 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 529
           GV+G  P  EL   P  + +    VG  +   ++S I  + + N S+++   R+      
Sbjct: 48  GVEGVVPAKELSTKPVEDINDAVKVGDELDLVVISKI-GNDKENGSYLLSHRRLEARKVW 106

Query: 530 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
           DD+ K    G  ++  V       +VV    +G+   ++ T+H  + L            
Sbjct: 107 DDIQKKFDEGEHITAKVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK-------- 158

Query: 587 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 644
           G E +  +V    S N L+ +   +I +  +  ++   + + P  VV G V  +   G F
Sbjct: 159 GQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAELQPGDVVEGKVARMTNFGAF 218

Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
           +  LG + G    S+         S     GQ V+  +L V+ E  RI+LS+KQ+     
Sbjct: 219 ID-LGGVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKVLSVDPERERISLSIKQTLPGPW 277

Query: 705 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 764
           D         +EEK                     + SV+ G V     FG  V  E   
Sbjct: 278 DD--------IEEKAP-------------------VDSVLTGTVKRLTSFGAFV--EVFP 308

Query: 765 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 807
            V G      I+H  +A     ++ G  +Q  +++V    + + LS+K +
Sbjct: 309 GVEGLVHISQISHKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSMKAL 358



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 149/351 (42%), Gaps = 30/351 (8%)

Query: 362 VKPGMVVKGKVIAVDS-FGAIVQFP-GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           VK G VVKG+V+A+D    AIV     GV+ + P   +S   +       KVG EL   V
Sbjct: 21  VKVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKVGDELDLVV 80

Query: 420 LGV-----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
           +       ++    ++H++   +     +    +  + +     +T+  K G  V    G
Sbjct: 81  ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDEGEHITAK--VTQAVKGGLVVDA--G 136

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSED 530
           V+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS       +  + +E 
Sbjct: 137 VRGFVPASMI-TDHYVEDLNQFK-GQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEK 194

Query: 531 DLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 587
              +L  G +V G V  +T     + +   G   G +    ++ DH++  +    V+  G
Sbjct: 195 VFAELQPGDVVEGKVARMTNFGAFIDL---GGVDGLVHVSEISYDHVDKPS---DVLTAG 248

Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 646
            +   ++L +D E   + LS K +L      +   A     +SV+ G V  +   G FV 
Sbjct: 249 QDVKVKVLSVDPERERISLSIKQTLPGPWDDIEEKAP---VDSVLTGTVKRLTSFGAFVE 305

Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
               + G    S+      A  +     GQ V+  +++V+ E  R+ LS+K
Sbjct: 306 VFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSMK 356



 Score = 44.7 bits (104), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 36/198 (18%)

Query: 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSG 1182
            +  GD+V G+++++ +   G  + +G  + G VH +E+    V  P         D L+ 
Sbjct: 199  LQPGDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEISYDHVDKP--------SDVLTA 247

Query: 1183 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1242
               GQ VK KVL +         + LS++ +L                 PG   + IE+ 
Sbjct: 248  ---GQDVKVKVLSVDPERE---RISLSIKQTL-----------------PGP-WDDIEEK 283

Query: 1243 SP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            +P + ++ G VK +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +V++
Sbjct: 284  APVDSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVIN 343

Query: 1302 VEPLSKRVEVTLKTSDSR 1319
            V+P  +R+ +++K  + R
Sbjct: 344  VDPEHQRLGLSMKALEER 361


>gi|227501804|ref|ZP_03931853.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
 gi|306835982|ref|ZP_07468974.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
 gi|227077829|gb|EEI15792.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
 gi|304568148|gb|EFM43721.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
          Length = 487

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 174/383 (45%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G V KVD++  LL I       + ++   +     P E+ E      +G  V   
Sbjct: 34   GDIVGGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVE------VGDEVDAL 87

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELQAKEEPVTGTVIEVVKG--GLIL 138

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +   +P  G               Q ++ K++E+ +      +
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG---------------QELEAKIIELDKQRN---N 180

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L    + +G V ++ + G F+ L 
Sbjct: 181  VVLSRRAYLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG 227

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +  
Sbjct: 228  -GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDP 281

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+
Sbjct: 282  WRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVTVGQ 340

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
            +V VK++ +D E+RRISL +K +
Sbjct: 341  EVMVKVIDIDLERRRISLSVKQA 363



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 417 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 530
           ++G    SEL       P  +  VGQ V  +++      RRI+LS        SE+
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLSVKQADEDYSEE 370



 Score = 47.4 bits (111), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 164/398 (41%), Gaps = 50/398 (12%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVGGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEVDALVLTKED 93

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    +A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEEL-QAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQLQ 205

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 650
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
           + G    S+          +   VGQ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLSVKQA-----DEDYSE 369

Query: 711 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
           E      K  M  S    G+ +          +W EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDPDTNEWKEGF 405


>gi|297195006|ref|ZP_06912404.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721927|gb|EDY65835.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 500

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|386839556|ref|YP_006244614.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus subsp.
            jinggangensis 5008]
 gi|374099857|gb|AEY88741.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus subsp.
            jinggangensis 5008]
 gi|451792849|gb|AGF62898.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus subsp.
            jinggangensis TL01]
          Length = 496

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 187/416 (44%), Gaps = 66/416 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 375



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|365860826|ref|ZP_09400618.1| 30S ribosomal protein S1 [Streptomyces sp. W007]
 gi|364009736|gb|EHM30684.1| 30S ribosomal protein S1 [Streptomyces sp. W007]
          Length = 506

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------LEAKIIELDKNRN---N 185

Query: 1206 VELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            V LS R+ L+   S    + L+T              L    +  G V ++ + G F+ L
Sbjct: 186  VVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDL 231

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q 
Sbjct: 232  G-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ- 289

Query: 1325 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  
Sbjct: 290  ----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVN 344

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            +++ VK++ +D E+RRISL +K +
Sbjct: 345  DEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|357414015|ref|YP_004925751.1| RNA binding S1 domain-containing protein [Streptomyces flavogriseus
            ATCC 33331]
 gi|320011384|gb|ADW06234.1| RNA binding S1 domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 503

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------LEAKIIELDKNRN---N 185

Query: 1206 VELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            V LS R+ L+   S    + L+T              L    +  G V ++ + G F+ L
Sbjct: 186  VVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDL 231

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q 
Sbjct: 232  G-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ- 289

Query: 1325 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  
Sbjct: 290  ----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVN 344

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            +++ VK++ +D E+RRISL +K +
Sbjct: 345  DEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|295839505|ref|ZP_06826438.1| ribosomal protein S1 [Streptomyces sp. SPB74]
 gi|197699395|gb|EDY46328.1| ribosomal protein S1 [Streptomyces sp. SPB74]
          Length = 504

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|291450767|ref|ZP_06590157.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
 gi|359144624|ref|ZP_09178558.1| 30S ribosomal protein S1 [Streptomyces sp. S4]
 gi|421738888|ref|ZP_16177225.1| ribosomal protein S1 [Streptomyces sp. SM8]
 gi|291353716|gb|EFE80618.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
 gi|406692679|gb|EKC96363.1| ribosomal protein S1 [Streptomyces sp. SM8]
          Length = 504

 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|453378894|dbj|GAC86206.1| 30S ribosomal protein S1 [Gordonia paraffinivorans NBRC 108238]
          Length = 483

 Score = 80.5 bits (197), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 183/414 (44%), Gaps = 64/414 (15%)

Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
            +I    + V++IG+   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
                          ++ K++E+ +      +V LS R+ L+   S   S+          
Sbjct: 169  --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202

Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
                +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  
Sbjct: 203  ----LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDE 257

Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
            V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ 
Sbjct: 258  VTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVR 312

Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +  + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 313  V-DEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 158/410 (38%), Gaps = 50/410 (12%)

Query: 422 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
           + S ++ V    T      AI S+     D  I  G I K+++    +      +G  P 
Sbjct: 6   ISSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPS 65

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSL 538
            EL +    +P  +  VG  V+  +++      R+ LS      +    + ++L +    
Sbjct: 66  RELSIKHDVDPHEVVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEA 125

Query: 539 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 597
           V G V  V    +++ +  +G+   ++        +E   V       G E + +++ LD
Sbjct: 126 VKGTVIEVVKGGLILDIGLRGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELD 177

Query: 598 NESSNLLLSAKYSLINSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 656
              +N++LS +  L  +  ++ S+  H +    V  G V +I+  G FV  LG + G   
Sbjct: 178 KNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVH 236

Query: 657 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 716
            S+         S+   VG  V   +LDV+ +  R++LSLK +        F + H    
Sbjct: 237 VSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH---- 291

Query: 717 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 776
                                  IG ++ GKV +   FG  V  +E   + G +   +LA
Sbjct: 292 ----------------------AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELA 327

Query: 777 GATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 819
              VE        G      ++D+    R + LSLK    D   E + ++
Sbjct: 328 ERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLTKED 95

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|408532678|emb|CCK30852.1| 30S ribosomal protein S1 [Streptomyces davawensis JCM 4913]
          Length = 498

 Score = 80.5 bits (197), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 187/416 (44%), Gaps = 66/416 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 375



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|256371862|ref|YP_003109686.1| RNA binding S1 domain-containing protein [Acidimicrobium ferrooxidans
            DSM 10331]
 gi|256008446|gb|ACU54013.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 427

 Score = 80.5 bits (197), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 170/395 (43%), Gaps = 71/395 (17%)

Query: 1022 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1081
            F+E D+     V+G V KVD +  LL I    K++  I         L+E   R  +  A
Sbjct: 49   FDEGDI-----VSGLVVKVDKDEVLLDIG--YKSEGVI--------PLRELSIRKDVSPA 93

Query: 1082 VTGHV------LSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRI 1133
                V      L + KE +  RLVL       S K          ++       +V G +
Sbjct: 94   DVVSVGDRIDALVLQKEDREGRLVL-------SKKRAQFEKAWKEIEAIKARDGVVRGEV 146

Query: 1134 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKV 1193
             +++ G  GL+V IG   +      +L+ +    P  G D               ++ K+
Sbjct: 147  IEVVKG--GLIVDIGLRGFLPASHVDLRRVRDLAPFVGQD---------------IEAKI 189

Query: 1194 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1253
            +E+ R   G  +V LS R+ L+           T +              P  + +G V 
Sbjct: 190  IELDR---GRNNVVLSRRAYLEENQRDQRERFLTSI-------------RPGEVRKGVVS 233

Query: 1254 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            ++   G F+ L   +D  V +S LS  +V+ P     +G  V   VL V+   +R+ ++L
Sbjct: 234  SIVHFGVFVDLG-GMDGLVHVSELSWNHVDHPSSVVSVGDEVQVLVLEVDQEHERISLSL 292

Query: 1314 KTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1372
            K +      +      ++ H +G++V G++ ++  +G F+ +    + GL H+SE++  H
Sbjct: 293  KAT-----QRDPWQEFASAHKIGELVYGRVTKIVPFGCFVQV-APGIEGLVHISEMALHH 346

Query: 1373 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            VD  E +   GE++ VKI+ +D  +RRISL ++ +
Sbjct: 347  VDLPEQVVSVGEELWVKIIDLDPGRRRISLSIRQA 381



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 6/163 (3%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           + ++PG V KG V ++  FG  V   GG+  L  +  +S   +  P     VG E+   V
Sbjct: 220 TSIRPGEVRKGVVSSIVHFGVFVDL-GGMDGLVHVSELSWNHVDHPSSVVSVGDEVQVLV 278

Query: 420 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V  + +RI+++ K T         S++       + +G +TKI   GCFV+   G++G
Sbjct: 279 LEVDQEHERISLSLKATQRDPWQEFASAHKIGE---LVYGRVTKIVPFGCFVQVAPGIEG 335

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
               SE+ L     P  +  VG+ +  +I+   P  RRI+LS 
Sbjct: 336 LVHISEMALHHVDLPEQVVSVGEELWVKIIDLDPGRRRISLSI 378



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 160/361 (44%), Gaps = 29/361 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G V+ VD    ++      + + PL  +S  + V P     VG  +   VL  + 
Sbjct: 52  GDIVSGLVVKVDKDEVLLDIGYKSEGVIPLRELSIRKDVSPADVVSVGDRIDALVLQKED 111

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           +  R+ ++ K+   +     + +  +A D ++  G + ++ K G  V    G++GF P S
Sbjct: 112 REGRLVLSKKRAQFEKAWKEIEAI-KARDGVV-RGEVIEVVKGGLIVDI--GLRGFLPAS 167

Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
            + L    + +    VGQ ++ +I+      +++  SRR  L    +  R      ++ G
Sbjct: 168 HVDLRRVRDLAPF--VGQDIEAKIIELDRGRNNVVLSRRAYLEENQRDQRERFLTSIRPG 225

Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQLLV 595
            +  GVV  +    V V +   G   G +    L+ +H++H +   SV+  G E  Q+LV
Sbjct: 226 EVRKGVVSSIVHFGVFVDL---GGMDGLVHVSELSWNHVDHPS---SVVSVGDEV-QVLV 278

Query: 596 L--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
           L  D E   + LS K +  +  Q+    AS      +V+G V  I+  GCFV+    + G
Sbjct: 279 LEVDQEHERISLSLKATQRDPWQEF---ASAHKIGELVYGRVTKIVPFGCFVQVAPGIEG 335

Query: 654 FAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 712
               S+       DL  +   VG+ +   I+D++    RI+LS++Q+      A   +E 
Sbjct: 336 LVHISEMA-LHHVDLPEQVVSVGEELWVKIIDLDPGRRRISLSIRQALEGGELAPEYREA 394

Query: 713 F 713
           F
Sbjct: 395 F 395


>gi|302035807|ref|YP_003796129.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii]
 gi|300603871|emb|CBK40203.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii]
          Length = 571

 Score = 80.5 bits (197), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 108/199 (54%), Gaps = 8/199 (4%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            ++G VK++T  G F+ L   +D  + +S++S   +++ P + F  G+ V   V+ ++   
Sbjct: 375  IEGKVKSLTDFGAFVGLEEGIDGLIHISDMSWTKHIKHPSELFKKGQKVDAVVIRIDKEK 434

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
            +R+ +  K   SR   + +I N     VGD + G++ ++  +GLFI ++  ++ GL H+S
Sbjct: 435  ERLSLGYKQL-SRDPWEEQIPN--KYRVGDSITGKVSKIADFGLFIELDG-DVEGLIHIS 490

Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1426
            E+  D    +E  ++ G+ V  KI+KVD+++R+I+L ++      D+D  Q+     S  
Sbjct: 491  EVGLDANVRMEEKFKPGDDVTAKIIKVDRDERKIALSLRDHQM--DSDRRQVDEFHASQG 548

Query: 1427 AIEE-VGSYNRSSLLENSS 1444
             I++ +G   + S   N S
Sbjct: 549  GIDQTLGRAAKQSRKRNQS 567



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 7/167 (4%)

Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
            L    ++QG VKN+T  G FI L   +D  + ++++S G V  P + F +   V   VL 
Sbjct: 197  LKEGQLIQGTVKNITDYGAFIDLG-GIDGLLHITDMSWGRVGHPSELFQVSDKVEVTVLK 255

Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
             +  + R+ + LK    + ++       +   VG  V G++  +  YG F+ +E   + G
Sbjct: 256  YDRETGRISLGLK----QKSADPWTGVAAKYPVGTRVRGRVVSLTDYGAFVELE-PGVEG 310

Query: 1362 LCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            L HVSE+S  H V +   +   G++V+  +L +D   R+ISLGMK +
Sbjct: 311  LVHVSEMSWTHEVRHPSRVVSVGDQVEAAVLNIDPGSRKISLGMKQT 357



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 2/115 (1%)

Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
            +GK    +++ +      V V+ +     T  +     LS L  G ++ G +K +  YG 
Sbjct: 156  VGKTFPLKIIKINHRRGNVVVSRRVLLEETRDRRRQTTLSTLKEGQLIQGTVKNITDYGA 215

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            FI +   +  GL H++++S   V +   +++  +KV+V +LK D+E  RISLG+K
Sbjct: 216  FIDLGGID--GLLHITDMSWGRVGHPSELFQVSDKVEVTVLKYDRETGRISLGLK 268



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 101/487 (20%), Positives = 184/487 (37%), Gaps = 79/487 (16%)

Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL-V 416
           T  + + G + +G V+A+     +V      + + P    S  E+ +     KVG  L V
Sbjct: 24  TFRNFEEGTITEGMVVAIGKDKVVVDIGYKSEGMIPADQFSHEELAQ----LKVGDRLQV 79

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
           +      +    V  K+   K K+          ++ I    I++I K G  V    GV+
Sbjct: 80  YLEECEDADGNLVLSKEKADKMKIWEELETLHKEEKSIEGKIISRI-KGGMMVDI--GVK 136

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 530
            F P S++ L P  +   +  VG+    +I+       ++  SRR+ L       R +  
Sbjct: 137 AFLPGSQIDLHPVRDLDGL--VGKTFPLKIIKINHRRGNVVVSRRVLLEETRDRRRQTTL 194

Query: 531 DLVKLGSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPTE--HLADHLEHATV 579
             +K G L+ G V  +T     +         ++    + +   P+E   ++D +E  TV
Sbjct: 195 STLKEGQLIQGTVKNITDYGAFIDLGGIDGLLHITDMSWGRVGHPSELFQVSDKVE-VTV 253

Query: 580 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 639
           +K               D E+  + L  K     SA      A+     + V G V ++ 
Sbjct: 254 LK--------------YDRETGRISLGLKQ---KSADPWTGVAAKYPVGTRVRGRVVSLT 296

Query: 640 ETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
           + G FV     + G    S+ +   +    S+   VG  V + +L+++  + +I+L +KQ
Sbjct: 297 DYGAFVELEPGVEGLVHVSEMSWTHEVRHPSRVVSVGDQVEAAVLNIDPGSRKISLGMKQ 356

Query: 699 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 758
           +  +  D        ++E K                   +  G+ IEGKV    DFG  V
Sbjct: 357 TAPNPWD--------MIEAK-------------------YPAGTRIEGKVKSLTDFGAFV 389

Query: 759 SFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
             EE      H     +  H +      + G  + A ++ + K +  + L  K +  D +
Sbjct: 390 GLEEGIDGLIHISDMSWTKHIKHPSELFKKGQKVDAVVIRIDKEKERLSLGYKQLSRDPW 449

Query: 813 REANSNR 819
            E   N+
Sbjct: 450 EEQIPNK 456



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 114/261 (43%), Gaps = 15/261 (5%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVK 423
           G  V+G+V+++  +GA V+   GV+ L  +  MS   E+  P +   VG ++   VL + 
Sbjct: 285 GTRVRGRVVSLTDYGAFVELEPGVEGLVHVSEMSWTHEVRHPSRVVSVGDQVEAAVLNID 344

Query: 424 --SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
             S++I++  K+T       I + Y   T      G +  +   G FV    G+ G    
Sbjct: 345 PGSRKISLGMKQTAPNPWDMIEAKYPAGTR---IEGKVKSLTDFGAFVGLEEGIDGLIHI 401

Query: 482 SELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---VKLGS 537
           S++      + PS ++  GQ V   ++       R++L +        E+ +    ++G 
Sbjct: 402 SDMSWTKHIKHPSELFKKGQKVDAVVIRIDKEKERLSLGYKQLSRDPWEEQIPNKYRVGD 461

Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVL 596
            ++G V  +      +++   G  +G I    +   L+    M+   KPG +   +++ +
Sbjct: 462 SITGKVSKIADFG--LFIELDGDVEGLIHISEVG--LDANVRMEEKFKPGDDVTAKIIKV 517

Query: 597 DNESSNLLLSAKYSLINSAQQ 617
           D +   + LS +   ++S ++
Sbjct: 518 DRDERKIALSLRDHQMDSDRR 538


>gi|300787975|ref|YP_003768266.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei U32]
 gi|384151397|ref|YP_005534213.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
 gi|399539858|ref|YP_006552520.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
 gi|299797489|gb|ADJ47864.1| small subunit ribosomal protein S1 [Amycolatopsis mediterranei U32]
 gi|340529551|gb|AEK44756.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
 gi|398320628|gb|AFO79575.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
          Length = 499

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 172/383 (44%), Gaps = 58/383 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 43   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VTVGDEVEAL 96

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 97   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVKGTVIEVVKG--GLIL 147

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 148  DIGLRGFLPASLVEMRRVRDLQPYVGRE---------------LEAKIIELDKNRN---N 189

Query: 1206 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265
            V LS R+ L+   S   S+              +  L+   + +G V ++ + G F+ L 
Sbjct: 190  VVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG 236

Query: 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1325
              +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q  
Sbjct: 237  -GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-- 293

Query: 1326 INNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1384
                +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + +   
Sbjct: 294  ---FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVNG 349

Query: 1385 KVKVKILKVDKEKRRISLGMKSS 1407
             V VK++ +D E+RRISL +K +
Sbjct: 350  DVMVKVIDIDLERRRISLSLKQA 372



 Score = 49.3 bits (116), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 148/368 (40%), Gaps = 52/368 (14%)

Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
           D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++   
Sbjct: 42  DGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKE 101

Query: 511 PASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
               R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P 
Sbjct: 102 DKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP- 156

Query: 568 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 625
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +
Sbjct: 157 ---ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNAL 213

Query: 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV
Sbjct: 214 AKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDV 272

Query: 686 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 745
           + +  R++LSLK +        F + H                           IG ++ 
Sbjct: 273 DMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVP 305

Query: 746 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAILDVAKAE 797
           GKV +   FG  V  EE   + G +   +LA   VE        +G V+   ++D+    
Sbjct: 306 GKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEIPEQVVQVNGDVM-VKVIDIDLER 362

Query: 798 RLVDLSLK 805
           R + LSLK
Sbjct: 363 RRISLSLK 370



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 150/358 (41%), Gaps = 32/358 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKED 102

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 708
            G    S+  +       +   V   V   ++D++ E  RI+LSLKQ+    T D  F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVTPDTEF 382


>gi|455646857|gb|EMF25877.1| 30S ribosomal protein S1 [Streptomyces gancidicus BKS 13-15]
          Length = 497

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|89898347|ref|YP_515457.1| 30S ribosomal protein S1 [Chlamydophila felis Fe/C-56]
 gi|89331719|dbj|BAE81312.1| 30S ribosomal protein S1 [Chlamydophila felis Fe/C-56]
          Length = 581

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 181/408 (44%), Gaps = 75/408 (18%)

Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVSGKIVKLL 316

Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
                G  ++I   + G +H +E+   KN+              DP    ++G  V+  VL
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVV-------------DPSEVVNKGDEVEAIVL 361

Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
             I +        ++SL     G+  T  +        P  ++E  E     + V   +KN
Sbjct: 362  SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVHAEIKN 401

Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
            +T+ G F+ L   ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVDKESKKITLGV 461

Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
            K   S   ++ E         G  + G + ++ ++G F+ ++N  + GL HVSELSE   
Sbjct: 462  KQLSSNPWNEIE----KMFPTGSNISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516

Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1421
              IE I   G+ V  K++K+D + +++SL +K   +  D  N Q  ++
Sbjct: 517  SKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE--YLADKQNDQTDAD 562



 Score = 60.8 bits (146), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
            EG IV G+I + + G  GL+V IG   +               P S  D  +   L  Y 
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175

Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
             G+  + K+L+I+   R   +V +S R  L+    +  ++L             IE ++ 
Sbjct: 176  VGKVCEFKILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219

Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
                +G VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+ 
Sbjct: 220  GERRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278

Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
               RV + LK  +       E         G  V G+I ++  YG FI IE   + GL H
Sbjct: 279  EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVSGKIVKLLPYGAFIEIEE-GIEGLIH 333

Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
            VSE+S  ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 334  VSEMSWVKNVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 422
           G+ V  ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+ +   +L V 
Sbjct: 392 GLHVHAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVD 451

Query: 423 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
            +SK+IT+  K+        I   +   ++     G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEKMFPTGSN---ISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 190/477 (39%), Gaps = 74/477 (15%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQAEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
            F P S+  +D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQ--IDNKKIKNLDDYVGKVCEFKIL-KINIDRRNVVVSRRELLEAERISKKAEL 213

Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
            + + +G    GVV  +T     V++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGVVKNITDFG--VFLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVSGKIVKLLPYGAF 321

Query: 645 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVHAEIKNLTNYGAFVELEPG 414

Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
                H     +I          + GS ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVDKESKKITLGVKQLSSNPWNE 471


>gi|51244751|ref|YP_064635.1| 30S ribosomal protein S1 [Desulfotalea psychrophila LSv54]
 gi|50875788|emb|CAG35628.1| probable 30S ribosomal protein S1 [Desulfotalea psychrophila LSv54]
          Length = 570

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 158/356 (44%), Gaps = 38/356 (10%)

Query: 359 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
            S ++ G ++KG +  +  +G  +   GG+  LC +  +S   +  P K +KVG EL  +
Sbjct: 192 RSKLEEGQIIKGAITNITDYGLFIDM-GGMDGLCHITDLSWGRVSHPAKLYKVGEELEVK 250

Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH----GWITKIEKHGCFVRFYNG 474
           VL     +    H +  +  K      +A   DR        G +  I  +G FV    G
Sbjct: 251 VL-----KYDKEHDRVSLGVKQLRDDPWATVVDRYPVSQQATGKVVSITDYGVFVELEEG 305

Query: 475 VQGFAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 533
           V+G    SE+        PS M  VG  ++  +++    ++RI+L   MK  + +  DLV
Sbjct: 306 VEGLIHVSEMTWSKKPRHPSKMVAVGDEIEVMVLNIETETKRISLG--MKQLQPNPWDLV 363

Query: 534 K----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVI 584
                +GS++ G +  +T   V +     G  +G     H++D      ++H T   +  
Sbjct: 364 TENYPVGSIIEGKIKNITDFGVFI-----GIEEGIDGLIHVSDLSWTERIKHPTEKYA-- 416

Query: 585 KPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIET 641
               E  Q +VL  D E+    L  K  + +  Q+    A + +P+ +VV G + N+ + 
Sbjct: 417 --KGEMIQAVVLKIDKENERFSLGVKQLIPDPWQE----AYNNYPSGTVVEGEITNVTDF 470

Query: 642 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
           G FV+    + G    S+    +       Y VG ++++ +++V+++  +I LS+K
Sbjct: 471 GVFVKLEEGIEGLVHVSEISKDKIKTPVGMYQVGDTLKAIVINVSAKDRKIGLSVK 526



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 168/386 (43%), Gaps = 69/386 (17%)

Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
            IG+++   VL  NK++  + +  R   +   +K      + M++ + EG I+ G I+ I 
Sbjct: 154  IGESLEFKVLKFNKKRNNVVISRRAILEEARNKL----REEMRSKLEEGQIIKGAITNIT 209

Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ--------FD----------- 1178
                GL + +G  + G  H T+L    VS P   Y  G+        +D           
Sbjct: 210  DY--GLFIDMG-GMDGLCHITDLSWGRVSHPAKLYKVGEELEVKVLKYDKEHDRVSLGVK 266

Query: 1179 --------------PLSGYDEGQFVKCK----VLEISRTVRGTFHV-ELSLRSSLDGMSS 1219
                          P+S    G+ V        +E+   V G  HV E++        S 
Sbjct: 267  QLRDDPWATVVDRYPVSQQATGKVVSITDYGVFVELEEGVEGLIHVSEMTWSKKPRHPSK 326

Query: 1220 TNSSD-----LSTDVDTPGKHLE-KIEDLSPN------------MIVQGYVKNVTSKGCF 1261
              +       +  +++T  K +   ++ L PN             I++G +KN+T  G F
Sbjct: 327  MVAVGDEIEVMVLNIETETKRISLGMKQLQPNPWDLVTENYPVGSIIEGKIKNITDFGVF 386

Query: 1262 IMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
            I +   +D  + +S+LS    ++ P +++  G+++   VL ++  ++R  + +K      
Sbjct: 387  IGIEEGIDGLIHVSDLSWTERIKHPTEKYAKGEMIQAVVLKIDKENERFSLGVKQLIPDP 446

Query: 1321 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1380
              ++     +N   G +V G+I  V  +G+F+ +E   + GL HVSE+S+D +     +Y
Sbjct: 447  WQEA----YNNYPSGTVVEGEITNVTDFGVFVKLEE-GIEGLVHVSEISKDKIKTPVGMY 501

Query: 1381 RAGEKVKVKILKVDKEKRRISLGMKS 1406
            + G+ +K  ++ V  + R+I L +K+
Sbjct: 502  QVGDTLKAIVINVSAKDRKIGLSVKT 527



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 78/408 (19%), Positives = 165/408 (40%), Gaps = 57/408 (13%)

Query: 908  KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
            +AI E E  +  R + +S  + G +++  IT I    L +  G G  G  HIT+++  + 
Sbjct: 177  RAILE-EARNKLREEMRSKLEEGQIIKGAITNITDYGLFIDMG-GMDGLCHITDLSWGRV 234

Query: 968  NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV 1027
            +    L+   K+G+ +  +++    + D     + +L   P    V              
Sbjct: 235  SHPAKLY---KVGEELEVKVLKYDKEHDRVSLGVKQLRDDPWATVVDR-----------Y 280

Query: 1028 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1087
             + Q+ TG V  + +    + +   ++  + + +  +   + +   +   +G  +   VL
Sbjct: 281  PVSQQATGKVVSITDYGVFVELEEGVEGLIHVSEMTW-SKKPRHPSKMVAVGDEIEVMVL 339

Query: 1088 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1147
            +I  E K + L ++  Q        D+  +N       G I+ G+I  I     G+ + I
Sbjct: 340  NIETETKRISLGMKQLQP----NPWDLVTENYPV----GSIIEGKIKNITDF--GVFIGI 389

Query: 1148 GPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1207
               + G +H ++L           + E    P   Y +G+ ++  VL+I +         
Sbjct: 390  EEGIDGLIHVSDLS----------WTERIKHPTEKYAKGEMIQAVVLKIDKE-------- 431

Query: 1208 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1267
             + R SL G+              P    E   +     +V+G + NVT  G F+ L   
Sbjct: 432  -NERFSL-GVKQL----------IPDPWQEAYNNYPSGTVVEGEITNVTDFGVFVKLEEG 479

Query: 1268 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
            ++  V +S +S   +++P   + +G  +   V++V    +++ +++KT
Sbjct: 480  IEGLVHVSEISKDKIKTPVGMYQVGDTLKAIVINVSAKDRKIGLSVKT 527


>gi|21220480|ref|NP_626259.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)]
 gi|289772280|ref|ZP_06531658.1| 30S ribosomal protein S1 [Streptomyces lividans TK24]
 gi|5689891|emb|CAB52054.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)]
 gi|289702479|gb|EFD69908.1| 30S ribosomal protein S1 [Streptomyces lividans TK24]
          Length = 502

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|257867659|ref|ZP_05647312.1| ribosomal protein S1 [Enterococcus casseliflavus EC30]
 gi|257873988|ref|ZP_05653641.1| ribosomal protein S1 [Enterococcus casseliflavus EC10]
 gi|257876567|ref|ZP_05656220.1| ribosomal protein S1 [Enterococcus casseliflavus EC20]
 gi|325571138|ref|ZP_08146710.1| 30S ribosomal protein S1 [Enterococcus casseliflavus ATCC 12755]
 gi|420263971|ref|ZP_14766606.1| ribosomal protein S1 [Enterococcus sp. C1]
 gi|257801742|gb|EEV30645.1| ribosomal protein S1 [Enterococcus casseliflavus EC30]
 gi|257808152|gb|EEV36974.1| ribosomal protein S1 [Enterococcus casseliflavus EC10]
 gi|257810733|gb|EEV39553.1| ribosomal protein S1 [Enterococcus casseliflavus EC20]
 gi|325156223|gb|EGC68409.1| 30S ribosomal protein S1 [Enterococcus casseliflavus ATCC 12755]
 gi|394768870|gb|EJF48747.1| ribosomal protein S1 [Enterococcus sp. C1]
          Length = 404

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 99/183 (54%), Gaps = 6/183 (3%)

Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
            DL     V+G V  +T  G F+ L   +D  V +S +S G+V  P     +G  V  R+L
Sbjct: 202  DLYEGQEVEGKVARLTDFGAFVDLG-GIDGLVHVSEISHGHVGKPSDVLSVGDTVNVRIL 260

Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
            SV+   +RV +++K  D+     + I   +   VG ++ G +KR+ S+G F+ +    + 
Sbjct: 261  SVDADKERVSLSIK--DTLPGPWTNIEEQAA--VGSVLTGTVKRLTSFGAFVEV-FPGVE 315

Query: 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1420
            GL H+S++S  H+     + + G++V+VK+L+V+  + RI+L +K+     + +  Q  S
Sbjct: 316  GLIHISQISHKHIATPHEVLQEGDEVQVKVLEVNPSEHRIALSIKALEKAENTNETQEVS 375

Query: 1421 EEE 1423
            E++
Sbjct: 376  EDD 378



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 9/176 (5%)

Query: 1234 KHLEKIE-DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1292
            K  E IE D     I++  V NV   G  + +  +    V  S + D +V   + E   G
Sbjct: 108  KVWEDIEKDFQEGKIIEAPVTNVVKGGLVVDVGVR--GFVPASMVEDHFV--ADFEDYKG 163

Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
            K +  +++ +EP   R+ ++ K   ++  A Q E   L++L+ G  V G++ R+  +G F
Sbjct: 164  KTLTFKIVEIEPSENRLILSHKAVVEAEKAKQKEAL-LADLYEGQEVEGKVARLTDFGAF 222

Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + +   +  GL HVSE+S  HV     +   G+ V V+IL VD +K R+SL +K +
Sbjct: 223  VDLGGID--GLVHVSEISHGHVGKPSDVLSVGDTVNVRILSVDADKERVSLSIKDT 276



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 14/182 (7%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           +D+  G  V+GKV  +  FGA V   GG+  L  +  +S   + KP     VG  +  R+
Sbjct: 201 ADLYEGQEVEGKVARLTDFGAFVDL-GGIDGLVHVSEISHGHVGKPSDVLSVGDTVNVRI 259

Query: 420 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V +  +R++++ K TL      I    A  +   +  G + ++   G FV  + GV+G
Sbjct: 260 LSVDADKERVSLSIKDTLPGPWTNIEEQAAVGS---VLTGTVKRLTSFGAFVEVFPGVEG 316

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSE 529
               S++       P  +   G  V+ +++   P+  RI LS           +   VSE
Sbjct: 317 LIHISQISHKHIATPHEVLQEGDEVQVKVLEVNPSEHRIALSIKALEKAENTNETQEVSE 376

Query: 530 DD 531
           DD
Sbjct: 377 DD 378



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 146/360 (40%), Gaps = 27/360 (7%)

Query: 351 AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKF 409
           + E  +    +VK G +VKG+V+A++   AIV   G GV+ + P   +S   +    +  
Sbjct: 15  SMEAALDNFQEVKVGDIVKGEVLAIEDKQAIVGIEGAGVEGVVPAKELSTLPVEDINEAV 74

Query: 410 KVGAEL---VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 466
           KVG  L   V   +G   +  +    K  + +K        +  +  I    +T + K G
Sbjct: 75  KVGDVLELVVISAIGKDKENGSYLLSKRRLDAKKVWEDIEKDFQEGKIIEAPVTNVVKGG 134

Query: 467 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---- 522
             V    GV+GF P S +  D        Y  G+ +  +I+   P+  R+ LS       
Sbjct: 135 LVVDV--GVRGFVPAS-MVEDHFVADFEDYK-GKTLTFKIVEIEPSENRLILSHKAVVEA 190

Query: 523 KPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 580
           +  +  E  L  L  G  V G V  +T     V +   G   G +   H+++ + H  V 
Sbjct: 191 EKAKQKEALLADLYEGQEVEGKVARLTDFGAFVDL---GGIDGLV---HVSE-ISHGHVG 243

Query: 581 K--SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 637
           K   V+  G   + ++L +D +   + LS K +L      +   A+     SV+ G V  
Sbjct: 244 KPSDVLSVGDTVNVRILSVDADKERVSLSIKDTLPGPWTNIEEQAA---VGSVLTGTVKR 300

Query: 638 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
           +   G FV     + G    S+      A   +    G  V+  +L+VN    RI LS+K
Sbjct: 301 LTSFGAFVEVFPGVEGLIHISQISHKHIATPHEVLQEGDEVQVKVLEVNPSEHRIALSIK 360


>gi|429740622|ref|ZP_19274304.1| 30S ribosomal protein S1 [Porphyromonas catoniae F0037]
 gi|429160612|gb|EKY03070.1| 30S ribosomal protein S1 [Porphyromonas catoniae F0037]
          Length = 597

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 7/170 (4%)

Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
            E I  L    +++G VKN+TS G FI L   +D  V +++LS G V  P +   + + + 
Sbjct: 206  EIIGKLEKGQVLEGVVKNITSYGAFIDLG-GIDGLVHITDLSWGRVSHPSEVVALDQTLN 264

Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
              +L  +   KR+ + LK          +    +NL VGD V G++  +  YG FI +  
Sbjct: 265  VVILEFDEAKKRIALGLKQLQPHPWDSLD----ANLKVGDKVKGKVVVLADYGAFIEV-A 319

Query: 1357 TNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
              + GL H+SE+S   H+ + + I + G++V+  IL +D+E+R++SLG+K
Sbjct: 320  PGVEGLVHISEMSWTQHIRSAQDILKVGDEVEAVILSLDREERKMSLGLK 369



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 37/182 (20%)

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFI--------MLSRKLDAKVLLSNLSDGYVESPEKEFPI 1291
            E L  + +V+GYVK  T  G  +        +   ++D + +     D YV+    EF I
Sbjct: 122  EALEKDEVVRGYVKCRTKGGMIVDIFGIEAFLPGSQIDVRPIRD--YDAYVDKT-MEFKI 178

Query: 1292 GKL--------VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1343
             K+        V+ +VL        +E  L+      A ++EI  +  L  G ++ G +K
Sbjct: 179  VKINQDFKNVVVSHKVL--------IEAELE------AQKAEI--IGKLEKGQVLEGVVK 222

Query: 1344 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403
             + SYG FI +   +  GL H+++LS   V +   +    + + V IL+ D+ K+RI+LG
Sbjct: 223  NITSYGAFIDLGGID--GLVHITDLSWGRVSHPSEVVALDQTLNVVILEFDEAKKRIALG 280

Query: 1404 MK 1405
            +K
Sbjct: 281  LK 282



 Score = 47.8 bits (112), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 9/161 (5%)

Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
            V+G V  +   G FI ++  ++  V +S +S   ++ S +    +G  V   +LS++   
Sbjct: 302  VKGKVVVLADYGAFIEVAPGVEGLVHISEMSWTQHIRSAQDILKVGDEVEAVILSLDREE 361

Query: 1307 KRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
            +++ + LK        +    N+     +G     +++   ++G+F+ IE   + GL H+
Sbjct: 362  RKMSLGLKQ-----LKEDPWENIDKRFPIGSRHTAKVRNFTNFGVFVEIEE-GIDGLVHI 415

Query: 1366 SELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            S+LS    + +       G  +++ +L++DKE RR+SLG K
Sbjct: 416  SDLSWTKKIKHPNEFTEVGAPLEIVVLEIDKENRRLSLGHK 456


>gi|418474377|ref|ZP_13043878.1| 30S ribosomal protein S1 [Streptomyces coelicoflavus ZG0656]
 gi|371545016|gb|EHN73675.1| 30S ribosomal protein S1 [Streptomyces coelicoflavus ZG0656]
          Length = 504

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|239986932|ref|ZP_04707596.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 11379]
 gi|291443880|ref|ZP_06583270.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998]
 gi|291346827|gb|EFE73731.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998]
          Length = 504

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------LEAKIIELDKNRN---N 185

Query: 1206 VELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            V LS R+ L+   S    + L+T              L    +  G V ++ + G F+ L
Sbjct: 186  VVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDL 231

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q 
Sbjct: 232  G-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ- 289

Query: 1325 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  
Sbjct: 290  ----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVN 344

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            +++ VK++ +D E+RRISL +K +
Sbjct: 345  DEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|182439327|ref|YP_001827046.1| 30S ribosomal protein S1 [Streptomyces griseus subsp. griseus NBRC
            13350]
 gi|326779979|ref|ZP_08239244.1| RNA binding S1 domain protein [Streptomyces griseus XylebKG-1]
 gi|411004248|ref|ZP_11380577.1| 30S ribosomal protein S1 [Streptomyces globisporus C-1027]
 gi|178467843|dbj|BAG22363.1| putative 30S ribosomal protein S1 [Streptomyces griseus subsp.
            griseus NBRC 13350]
 gi|326660312|gb|EGE45158.1| RNA binding S1 domain protein [Streptomyces griseus XylebKG-1]
          Length = 505

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------LEAKIIELDKNRN---N 185

Query: 1206 VELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            V LS R+ L+   S    + L+T              L    +  G V ++ + G F+ L
Sbjct: 186  VVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDL 231

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q 
Sbjct: 232  G-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ- 289

Query: 1325 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  
Sbjct: 290  ----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVN 344

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            +++ VK++ +D E+RRISL +K +
Sbjct: 345  DEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|30261593|ref|NP_843970.1| 30S ribosomal protein S1 [Bacillus anthracis str. Ames]
 gi|47526793|ref|YP_018142.1| 30S ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184425|ref|YP_027677.1| 30S ribosomal protein S1 [Bacillus anthracis str. Sterne]
 gi|49477253|ref|YP_035714.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar konkukian
            str. 97-27]
 gi|65318864|ref|ZP_00391823.1| COG0539: Ribosomal protein S1 [Bacillus anthracis str. A2012]
 gi|118477052|ref|YP_894203.1| 30S ribosomal protein S1 [Bacillus thuringiensis str. Al Hakam]
 gi|165869571|ref|ZP_02214230.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
 gi|167633256|ref|ZP_02391581.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
 gi|167639190|ref|ZP_02397463.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
 gi|170686252|ref|ZP_02877474.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
 gi|170706479|ref|ZP_02896939.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
 gi|177650520|ref|ZP_02933487.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
 gi|190568598|ref|ZP_03021503.1| ribosomal protein S1 [Bacillus anthracis str. Tsiankovskii-I]
 gi|196033526|ref|ZP_03100938.1| ribosomal protein S1 [Bacillus cereus W]
 gi|196046631|ref|ZP_03113855.1| ribosomal protein S1 [Bacillus cereus 03BB108]
 gi|218902709|ref|YP_002450543.1| 30S ribosomal protein S1 [Bacillus cereus AH820]
 gi|225863461|ref|YP_002748839.1| ribosomal protein S1 [Bacillus cereus 03BB102]
 gi|227815655|ref|YP_002815664.1| 30S ribosomal protein S1 [Bacillus anthracis str. CDC 684]
 gi|228914171|ref|ZP_04077789.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
            BGSC 4CC1]
 gi|228926628|ref|ZP_04089697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|228932883|ref|ZP_04095750.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228945197|ref|ZP_04107553.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
            BGSC 4AJ1]
 gi|229090559|ref|ZP_04221794.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
 gi|229121140|ref|ZP_04250377.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
 gi|229183792|ref|ZP_04311009.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
 gi|229604611|ref|YP_002866001.1| 30S ribosomal protein S1 [Bacillus anthracis str. A0248]
 gi|254683085|ref|ZP_05146946.1| 30S ribosomal protein S1 [Bacillus anthracis str. CNEVA-9066]
 gi|254733536|ref|ZP_05191257.1| 30S ribosomal protein S1 [Bacillus anthracis str. Western North
            America USA6153]
 gi|254740845|ref|ZP_05198533.1| 30S ribosomal protein S1 [Bacillus anthracis str. Kruger B]
 gi|254755083|ref|ZP_05207117.1| 30S ribosomal protein S1 [Bacillus anthracis str. Vollum]
 gi|254759620|ref|ZP_05211644.1| 30S ribosomal protein S1 [Bacillus anthracis str. Australia 94]
 gi|301053136|ref|YP_003791347.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI]
 gi|376265440|ref|YP_005118152.1| 30S ribosomal protein S1 [Bacillus cereus F837/76]
 gi|386735301|ref|YP_006208482.1| 30S ribosomal protein S1 [Bacillus anthracis str. H9401]
 gi|421638607|ref|ZP_16079202.1| 30S ribosomal protein S1 [Bacillus anthracis str. BF1]
 gi|423552668|ref|ZP_17528995.1| ribosomal protein S1 [Bacillus cereus ISP3191]
 gi|30255447|gb|AAP25456.1| ribosomal protein S1 [Bacillus anthracis str. Ames]
 gi|47501941|gb|AAT30617.1| ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178352|gb|AAT53728.1| ribosomal protein S1 [Bacillus anthracis str. Sterne]
 gi|49328809|gb|AAT59455.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus
            thuringiensis serovar konkukian str. 97-27]
 gi|118416277|gb|ABK84696.1| SSU ribosomal protein S1P [Bacillus thuringiensis str. Al Hakam]
 gi|164715011|gb|EDR20529.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
 gi|167512980|gb|EDR88353.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
 gi|167531294|gb|EDR93972.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
 gi|170128577|gb|EDS97444.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
 gi|170669949|gb|EDT20690.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
 gi|172083664|gb|EDT68724.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
 gi|190560198|gb|EDV14178.1| ribosomal protein S1 [Bacillus anthracis str. Tsiankovskii-I]
 gi|195993960|gb|EDX57916.1| ribosomal protein S1 [Bacillus cereus W]
 gi|196022564|gb|EDX61247.1| ribosomal protein S1 [Bacillus cereus 03BB108]
 gi|218535461|gb|ACK87859.1| ribosomal protein S1 [Bacillus cereus AH820]
 gi|225787178|gb|ACO27395.1| ribosomal protein S1 [Bacillus cereus 03BB102]
 gi|227004701|gb|ACP14444.1| ribosomal protein S1 [Bacillus anthracis str. CDC 684]
 gi|228599641|gb|EEK57244.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
 gi|228662259|gb|EEL17862.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
 gi|228692762|gb|EEL46486.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
 gi|228814432|gb|EEM60697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
            BGSC 4AJ1]
 gi|228826804|gb|EEM72571.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228833004|gb|EEM78572.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|228845504|gb|EEM90537.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
            BGSC 4CC1]
 gi|229269019|gb|ACQ50656.1| ribosomal protein S1 [Bacillus anthracis str. A0248]
 gi|300375305|gb|ADK04209.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI]
 gi|364511240|gb|AEW54639.1| SSU ribosomal protein S1p [Bacillus cereus F837/76]
 gi|384385153|gb|AFH82814.1| 30S ribosomal protein S1 [Bacillus anthracis str. H9401]
 gi|401186610|gb|EJQ93698.1| ribosomal protein S1 [Bacillus cereus ISP3191]
 gi|403394134|gb|EJY91375.1| 30S ribosomal protein S1 [Bacillus anthracis str. BF1]
          Length = 382

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVGGEVKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 530
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|383643400|ref|ZP_09955806.1| 30S ribosomal protein S1 [Streptomyces chartreusis NRRL 12338]
          Length = 498

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|443628333|ref|ZP_21112687.1| putative 30S ribosomal protein S1 [Streptomyces viridochromogenes
            Tue57]
 gi|443338157|gb|ELS52445.1| putative 30S ribosomal protein S1 [Streptomyces viridochromogenes
            Tue57]
          Length = 498

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 187/416 (44%), Gaps = 66/416 (15%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 375



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|228938709|ref|ZP_04101313.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
            ATCC 10792]
 gi|228971591|ref|ZP_04132214.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228978201|ref|ZP_04138578.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|384185506|ref|YP_005571402.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis
            CT-43]
 gi|410673799|ref|YP_006926170.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|423382992|ref|ZP_17360248.1| ribosomal protein S1 [Bacillus cereus BAG1X1-2]
 gi|423530548|ref|ZP_17506993.1| ribosomal protein S1 [Bacillus cereus HuB1-1]
 gi|452197822|ref|YP_007477903.1| SSU ribosomal protein S1p [Bacillus thuringiensis serovar
            thuringiensis str. IS5056]
 gi|228781218|gb|EEM29419.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|228788114|gb|EEM36070.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228820950|gb|EEM66971.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
            ATCC 10792]
 gi|326939215|gb|AEA15111.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis
            CT-43]
 gi|401643852|gb|EJS61546.1| ribosomal protein S1 [Bacillus cereus BAG1X1-2]
 gi|402447063|gb|EJV78921.1| ribosomal protein S1 [Bacillus cereus HuB1-1]
 gi|409172928|gb|AFV17233.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|452103215|gb|AGG00155.1| SSU ribosomal protein S1p [Bacillus thuringiensis serovar
            thuringiensis str. IS5056]
          Length = 382

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 176/394 (44%), Gaps = 64/394 (16%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
            +   G++VKVK+L+V   ++RISL +K +  +N+
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENN 350



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 130/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTA-----SQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K +          SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVIEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|157738252|ref|YP_001490936.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
 gi|157700106|gb|ABV68266.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
          Length = 550

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 173/363 (47%), Gaps = 51/363 (14%)

Query: 1049 ISRHLKAQLFILDSA----YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1104
            +S   K    I D+A    + P      + +  IGK V   V+ +NK +  + +V R   
Sbjct: 120  VSVKQKGGFVIEDAAGCEYFMPMAQSYLKTQGAIGKTVKAKVIKVNKAQNSI-IVSRK-- 176

Query: 1105 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1164
              + +++ +I ++ +   + + + + G I KI S   G+ V +G  + G V++ E+    
Sbjct: 177  -KLIEESKNIKDNKVAEILEKKEAINGTIKKITSY--GMFVDLGG-IDGLVNYNEI---- 228

Query: 1165 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1224
                   Y +G  +P + Y+EG  V   VL   +  +   H+ LS++++L          
Sbjct: 229  ------SY-KGPVNPANYYNEGDEVSVVVLAYDKAKQ---HLSLSIKAALS--------- 269

Query: 1225 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVE 1283
                   P K ++   ++   + V   V N  S G F+ L   ++  + +S +S +  ++
Sbjct: 270  ------NPWKEIKDQLEVGDTITVT--VSNFESYGAFVDLGNDIEGLLHISEISWNKNLK 321

Query: 1284 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQI 1342
            +P++   IG  +   V+ +    KR+ V+LK    +  ++       N H VGD++ G+I
Sbjct: 322  NPKELLTIGDEINVEVIELNVEQKRLRVSLKNLQEKPFTK-----FVNEHKVGDVIKGKI 376

Query: 1343 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402
              +  +G F+ I + +  GL H  E S +     +++++ G++V+V+I+K+DKEK  ISL
Sbjct: 377  ATLTDFGAFVNIGDVD--GLLHNEEASWESNAKCKSLFKKGDEVEVRIIKIDKEKENISL 434

Query: 1403 GMK 1405
             +K
Sbjct: 435  SIK 437



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 109/514 (21%), Positives = 216/514 (42%), Gaps = 73/514 (14%)

Query: 322 KYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 379
           KY  G  + V ++G +      +   +L+   F+  V TH +    + ++GK+++V   G
Sbjct: 67  KYNVGDVIPVMLMGNKGERPNISHKKVLQKEKFDNFVKTHGEDFEDVTIEGKIVSVKQKG 126

Query: 380 A-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV 436
             +++   G +   P   M++  +   G    +G  +  +V+ V   +  I V+ KK + 
Sbjct: 127 GFVIEDAAGCEYFMP---MAQSYLKTQG---AIGKTVKAKVIKVNKAQNSIIVSRKKLIE 180

Query: 437 KSKLAILSSYAEATDRL-ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 495
           +SK    +  AE  ++    +G I KI  +G FV    G+ G    +E+       P++ 
Sbjct: 181 ESKNIKDNKVAEILEKKEAINGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNPANY 239

Query: 496 YHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 552
           Y+ G  V   +++   A + ++LS    +  P +  +D L ++G  ++  V V    +  
Sbjct: 240 YNEGDEVSVVVLAYDKAKQHLSLSIKAALSNPWKEIKDQL-EVGDTIT--VTVSNFESYG 296

Query: 553 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSNLLL 605
            +V      +G +       H+   +  K++  P      G E + +++ L+ E   L +
Sbjct: 297 AFVDLGNDIEGLL-------HISEISWNKNLKNPKELLTIGDEINVEVIELNVEQKRLRV 349

Query: 606 SAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 663
           S K     + Q+ P +   + H    V+ G +  + + G FV  +G + G     +A   
Sbjct: 350 SLK-----NLQEKPFTKFVNEHKVGDVIKGKIATLTDFGAFVN-IGDVDGLLHNEEASWE 403

Query: 664 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 723
             A     +  G  V   I+ ++ E   I+LS+K    S + A   Q+ + L        
Sbjct: 404 SNAKCKSLFKKGDEVEVRIIKIDKEKENISLSIKD--ISDSPAKRFQDAYKL-------- 453

Query: 724 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ---LAGATV 780
                            G +++G V +  DFG+ +  E + D  G I +     L    V
Sbjct: 454 -----------------GDIVKGPVKDIKDFGIFIKLENNLD--GLIRNEDFGPLKADEV 494

Query: 781 ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
           ++G  I+A I+++   +  V LS++ +   + RE
Sbjct: 495 KNGDEIEAVIINIDTKKNRVRLSVRRLEQQQERE 528


>gi|29832775|ref|NP_827409.1| 30S ribosomal protein S1 [Streptomyces avermitilis MA-4680]
 gi|29609895|dbj|BAC73944.1| putative ribosomal protein S1 [Streptomyces avermitilis MA-4680]
          Length = 501

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|52143850|ref|YP_082978.1| 30S ribosomal protein S1 [Bacillus cereus E33L]
 gi|51977319|gb|AAU18869.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus cereus
            E33L]
          Length = 382

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NIGGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENIGGEIKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 530
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  IGGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|254384227|ref|ZP_04999571.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1]
 gi|194343116|gb|EDX24082.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1]
          Length = 503

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------LEAKIIELDKNRN---N 185

Query: 1206 VELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            V LS R+ L+   S    + L+T              L    +  G V ++ + G F+ L
Sbjct: 186  VVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDL 231

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q 
Sbjct: 232  G-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ- 289

Query: 1325 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  
Sbjct: 290  ----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVN 344

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            +++ VK++ +D E+RRISL +K +
Sbjct: 345  DEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|302518440|ref|ZP_07270782.1| ribosomal protein S1 [Streptomyces sp. SPB78]
 gi|318056317|ref|ZP_07975040.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actG]
 gi|318076495|ref|ZP_07983827.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actF]
 gi|302427335|gb|EFK99150.1| ribosomal protein S1 [Streptomyces sp. SPB78]
          Length = 504

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|294628772|ref|ZP_06707332.1| ribosomal protein S1 [Streptomyces sp. e14]
 gi|292832105|gb|EFF90454.1| ribosomal protein S1 [Streptomyces sp. e14]
          Length = 496

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 1011 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1060
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1061 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1120
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1121 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPL 1180
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +       
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE------- 171

Query: 1181 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKI 1239
                    ++ K++E+ +      +V LS R+ L+   S    + L+T            
Sbjct: 172  --------LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT------------ 208

Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
              L    +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   V
Sbjct: 209  --LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEV 265

Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN 1358
            L V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  
Sbjct: 266  LDVDMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEG 319

Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
            + GL H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 320  IEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|344999023|ref|YP_004801877.1| RNA binding S1 domain-containing protein [Streptomyces sp. SirexAA-E]
 gi|344314649|gb|AEN09337.1| RNA binding S1 domain protein [Streptomyces sp. SirexAA-E]
          Length = 504

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------LEAKIIELDKNRN---N 185

Query: 1206 VELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            V LS R+ L+   S    + L+T              L    +  G V ++ + G F+ L
Sbjct: 186  VVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDL 231

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q 
Sbjct: 232  G-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ- 289

Query: 1325 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  
Sbjct: 290  ----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVN 344

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            +++ VK++ +D E+RRISL +K +
Sbjct: 345  DEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|384173360|ref|YP_005554737.1| 30S ribosomal protein S1 [Arcobacter sp. L]
 gi|345472970|dbj|BAK74420.1| 30S ribosomal protein S1 [Arcobacter sp. L]
          Length = 550

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 171/355 (48%), Gaps = 52/355 (14%)

Query: 1058 FILDSA-----YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1112
            FI++ A     + P      + +  IGK V   V+ +NK +  + +V R     + +++ 
Sbjct: 128  FIIEDADGCEYFMPMAQSYLKAQGAIGKTVKAKVIKVNKAQNSI-IVSRK---KLIEESK 183

Query: 1113 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1172
             + ++ +   +   + V G I KI S   G+ V +G  + G V++ E+           Y
Sbjct: 184  AVKDNKVSEILENKEPVNGIIKKITSY--GMFVDLG-GIDGLVNYNEI----------SY 230

Query: 1173 DEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232
             +G  +P + Y+EG  V   VL   +  +   H+ LS++++L                 P
Sbjct: 231  -KGPVNPANYYNEGDEVSVVVLSYDKAKQ---HLSLSIKAALS---------------NP 271

Query: 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPI 1291
             + ++  ++L     +   V N  S G F+ L   ++  + +S +S +  +++P++   I
Sbjct: 272  WEEIK--DELEVGDTITVTVSNFESYGAFVDLGNDIEGLLHISEISWNKNLKNPKELLTI 329

Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGL 1350
            G+ +   V+ +    KR+ V+LK    +  ++      +N H VGD++ G+I  +  +G 
Sbjct: 330  GEEINVEVIELNVEQKRLRVSLKNLQEKPFTK-----FTNEHKVGDVIKGKIATLTDFGA 384

Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
            F++I   +  GL H  E S +     +TI++ G++V+VKI+K+DKEK  ISL +K
Sbjct: 385  FVSIGEVD--GLLHNEEASWEPNAKCKTIFKKGDEVEVKIIKIDKEKENISLSVK 437



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/426 (21%), Positives = 181/426 (42%), Gaps = 79/426 (18%)

Query: 408 KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHG 466
           K+KVG  +   ++G + +R +++HKK L K K  A + ++ E  + +   G I  +++ G
Sbjct: 67  KYKVGDTIPVMLMGNRGERPSISHKKVLQKEKFDAFVKAHGEDFEDVTIEGKIISVKQRG 126

Query: 467 CF-VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRR--IN 517
            F +   +G + F P ++  L       +   +G+ VK +++      +SI  SR+  I 
Sbjct: 127 GFIIEDADGCEYFMPMAQSYL------KAQGAIGKTVKAKVIKVNKAQNSIIVSRKKLIE 180

Query: 518 LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 577
            S  +K  +VSE  +++    V+G++  +T   + V +   G   G +    ++      
Sbjct: 181 ESKAVKDNKVSE--ILENKEPVNGIIKKITSYGMFVDL---GGIDGLVNYNEIS------ 229

Query: 578 TVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 630
              K  + P   +++       +L  D    +L LS K +L N  +++  +   +     
Sbjct: 230 --YKGPVNPANYYNEGDEVSVVVLSYDKAKQHLSLSIKAALSNPWEEIKDE---LEVGDT 284

Query: 631 VHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSET 689
           +   V N    G FV     + G    S+ + +    +  +   +G+ +   ++++N E 
Sbjct: 285 ITVTVSNFESYGAFVDLGNDIEGLLHISEISWNKNLKNPKELLTIGEEINVEVIELNVEQ 344

Query: 690 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 749
            R+ +SLK                 L+EK     +++H            +G VI+GK+ 
Sbjct: 345 KRLRVSLKN----------------LQEKPFTKFTNEHK-----------VGDVIKGKIA 377

Query: 750 ESNDFGVVVSFEEHSDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVD 801
              DFG  VS  E   V G + H++ A            + G  ++  I+ + K +  + 
Sbjct: 378 TLTDFGAFVSIGE---VDGLL-HNEEASWEPNAKCKTIFKKGDEVEVKIIKIDKEKENIS 433

Query: 802 LSLKTV 807
           LS+K +
Sbjct: 434 LSVKEI 439


>gi|217959075|ref|YP_002337623.1| 30S ribosomal protein S1 [Bacillus cereus AH187]
 gi|229138291|ref|ZP_04266886.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26]
 gi|375283572|ref|YP_005104010.1| 30S ribosomal protein S1 [Bacillus cereus NC7401]
 gi|423353921|ref|ZP_17331547.1| ribosomal protein S1 [Bacillus cereus IS075]
 gi|423569488|ref|ZP_17545734.1| ribosomal protein S1 [Bacillus cereus MSX-A12]
 gi|217064831|gb|ACJ79081.1| ribosomal protein S1 [Bacillus cereus AH187]
 gi|228645183|gb|EEL01420.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26]
 gi|358352098|dbj|BAL17270.1| ribosomal protein S1 [Bacillus cereus NC7401]
 gi|401088267|gb|EJP96458.1| ribosomal protein S1 [Bacillus cereus IS075]
 gi|401206476|gb|EJR13267.1| ribosomal protein S1 [Bacillus cereus MSX-A12]
          Length = 382

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVGGEVKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 530
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|218234210|ref|YP_002366278.1| 30S ribosomal protein S1 [Bacillus cereus B4264]
 gi|228920308|ref|ZP_04083655.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|228957873|ref|ZP_04119613.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
            str. T13001]
 gi|229043342|ref|ZP_04191060.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
 gi|229069150|ref|ZP_04202441.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
 gi|229078780|ref|ZP_04211333.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
 gi|229109053|ref|ZP_04238653.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
 gi|229144196|ref|ZP_04272610.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
 gi|229149795|ref|ZP_04278024.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
 gi|229178005|ref|ZP_04305377.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
 gi|365162295|ref|ZP_09358425.1| ribosomal protein S1 [Bacillus sp. 7_6_55CFAA_CT2]
 gi|423414716|ref|ZP_17391836.1| ribosomal protein S1 [Bacillus cereus BAG3O-2]
 gi|423423673|ref|ZP_17400704.1| ribosomal protein S1 [Bacillus cereus BAG3X2-2]
 gi|423429502|ref|ZP_17406506.1| ribosomal protein S1 [Bacillus cereus BAG4O-1]
 gi|423435084|ref|ZP_17412065.1| ribosomal protein S1 [Bacillus cereus BAG4X12-1]
 gi|423579790|ref|ZP_17555901.1| ribosomal protein S1 [Bacillus cereus VD014]
 gi|423588020|ref|ZP_17564107.1| ribosomal protein S1 [Bacillus cereus VD045]
 gi|423629542|ref|ZP_17605290.1| ribosomal protein S1 [Bacillus cereus VD154]
 gi|423643358|ref|ZP_17618976.1| ribosomal protein S1 [Bacillus cereus VD166]
 gi|423654378|ref|ZP_17629677.1| ribosomal protein S1 [Bacillus cereus VD200]
 gi|218162167|gb|ACK62159.1| ribosomal protein S1 [Bacillus cereus B4264]
 gi|228605493|gb|EEK62942.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
 gi|228633659|gb|EEK90259.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
 gi|228639204|gb|EEK95620.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
 gi|228674331|gb|EEL29575.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
 gi|228704462|gb|EEL56895.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
 gi|228713902|gb|EEL65786.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
 gi|228725990|gb|EEL77229.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
 gi|228801789|gb|EEM48666.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
            str. T13001]
 gi|228839331|gb|EEM84625.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|363618608|gb|EHL69952.1| ribosomal protein S1 [Bacillus sp. 7_6_55CFAA_CT2]
 gi|401097636|gb|EJQ05658.1| ribosomal protein S1 [Bacillus cereus BAG3O-2]
 gi|401115363|gb|EJQ23216.1| ribosomal protein S1 [Bacillus cereus BAG3X2-2]
 gi|401121808|gb|EJQ29597.1| ribosomal protein S1 [Bacillus cereus BAG4O-1]
 gi|401125322|gb|EJQ33082.1| ribosomal protein S1 [Bacillus cereus BAG4X12-1]
 gi|401217245|gb|EJR23939.1| ribosomal protein S1 [Bacillus cereus VD014]
 gi|401227757|gb|EJR34286.1| ribosomal protein S1 [Bacillus cereus VD045]
 gi|401267409|gb|EJR73469.1| ribosomal protein S1 [Bacillus cereus VD154]
 gi|401275362|gb|EJR81329.1| ribosomal protein S1 [Bacillus cereus VD166]
 gi|401295889|gb|EJS01512.1| ribosomal protein S1 [Bacillus cereus VD200]
          Length = 382

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 180/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFTDY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 43.9 bits (102), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


>gi|408677342|ref|YP_006877169.1| SSU ribosomal protein S1p [Streptomyces venezuelae ATCC 10712]
 gi|328881671|emb|CCA54910.1| SSU ribosomal protein S1p [Streptomyces venezuelae ATCC 10712]
          Length = 503

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 1030 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 41   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 94

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 95   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 145

Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFH 1205
             IG   +      E++ +    P  G +               ++ K++E+ +      +
Sbjct: 146  DIGLRGFLPASLVEMRRVRDLQPYVGKE---------------LEAKIIELDKNRN---N 187

Query: 1206 VELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
            V LS R+ L+   S    + L+T              L    +  G V ++ + G F+ L
Sbjct: 188  VVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDL 233

Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
               +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q 
Sbjct: 234  G-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ- 291

Query: 1325 EINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1383
                 +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  
Sbjct: 292  ----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVN 346

Query: 1384 EKVKVKILKVDKEKRRISLGMKSS 1407
            +++ VK++ +D E+RRISL +K +
Sbjct: 347  DEIFVKVIDIDLERRRISLSLKQA 370



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 41  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 100

Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 157 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 212

Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 323

Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 324 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 373


>gi|229016854|ref|ZP_04173782.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
 gi|229023060|ref|ZP_04179574.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
 gi|423420453|ref|ZP_17397542.1| ribosomal protein S1 [Bacillus cereus BAG3X2-1]
 gi|228738206|gb|EEL88688.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
 gi|228744415|gb|EEL94489.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
 gi|401102362|gb|EJQ10349.1| ribosomal protein S1 [Bacillus cereus BAG3X2-1]
          Length = 382

 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 64/409 (15%)

Query: 1026 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1143
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFNSGYVFDVTVKDIVNG--GL 118

Query: 1144 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198
            VV +G     P     VH+ E                     + Y +G+ +  K++E+ R
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE-------------------DFADY-KGKTLAVKIVELDR 158

Query: 1199 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1258
                   V LS ++ ++             ++   K  E I  L    +V+G V+ +T  
Sbjct: 159  E---KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDF 202

Query: 1259 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318
            G F+ +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +  
Sbjct: 203  GAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQP 261

Query: 1319 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378
                    N    +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   
Sbjct: 262  GPWE----NVAGEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNE 316

Query: 1379 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
            +   G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 317  VLEMGQEVKVKVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365



 Score = 43.9 bits (102), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 46/294 (15%)

Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
            FI  S  E   +++F    + GK +   ++ +++EK   R++L      + +  +D    
Sbjct: 127  FIPASLVEVHYVEDFAD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180

Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
               + + EGD+V G + ++     G  V +G  + G VH +++ +  V  P    ++GQ 
Sbjct: 181  EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237

Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
                       VK KVL +      T  + LS++++                  PG    
Sbjct: 238  -----------VKVKVLSVDAD---TQRISLSIKAA-----------------QPGPWEN 266

Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
               ++    I +G VK + + G F+ +   ++  V +S +++ +V++P +   +G+ V  
Sbjct: 267  VAGEIKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326

Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
            +VL V    KR+ +++K      + +   SQ E N + +   + DI+  Q+K++
Sbjct: 327  KVLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.317    0.134    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,712,763,214
Number of Sequences: 23463169
Number of extensions: 1112607867
Number of successful extensions: 3897172
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7140
Number of HSP's successfully gapped in prelim test: 9187
Number of HSP's that attempted gapping in prelim test: 3762994
Number of HSP's gapped (non-prelim): 94284
length of query: 1801
length of database: 8,064,228,071
effective HSP length: 157
effective length of query: 1644
effective length of database: 8,675,477,834
effective search space: 14262485559096
effective search space used: 14262485559096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 85 (37.4 bits)