BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000242
(1801 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/1897 (29%), Positives = 913/1897 (48%), Gaps = 215/1897 (11%)
Query: 1 MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
M++ G V EVNE +LVI LP GL+G + + D NE E L LP +F
Sbjct: 84 MRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELF 143
Query: 54 HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
G LV C+V L + GK+ + LSL + + LS E ++ GM+LT V S+EDHG
Sbjct: 144 SPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHG 201
Query: 114 YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
Y++ G+ FLP E N G +K G L +V + VV LS
Sbjct: 202 YLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 261
Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
VS + + + +++ L+PG++V +VQ + G+ L+FLT+FTG VD HL T
Sbjct: 262 VSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTY 321
Query: 229 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
+ N + V A IL V P +R V L+L P L P + + +G + D V
Sbjct: 322 FSN-----QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGF 376
Query: 286 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
+ G + + AY +S +++ + + +K G+ + RI+ + ++ LA
Sbjct: 377 FKKAGATFRLKDGVL---AYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALL 433
Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
L+ S E + D++PG VVKG V+ + S+G +V+ ++ L P H+++ + P
Sbjct: 434 SLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNP 493
Query: 406 GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
KK+ +G E+ RVL ++K++ +T KKTL++SKL +++ YA+A L THG+I +++
Sbjct: 494 EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVK 553
Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
+GC V+FYN VQG P+ EL + +P +++ GQVVK +++ P+ R+ LSF +
Sbjct: 554 DYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLS 613
Query: 523 -------KPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
+P S+ + +G LV V T + + V V+ + +PT HL+DH
Sbjct: 614 SDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNI-RAFLPTSHLSDH 672
Query: 574 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
+ + ++ ++ G ++L L +LL K +L+++ + Q P + S IHP ++
Sbjct: 673 VANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLL 732
Query: 632 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
G+V +I + G F++F L+G AP++ D S + GQ+V + + +V+ E R
Sbjct: 733 IGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQR 792
Query: 692 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEGFIIGSVIEG 746
+ LSL+ S C D + + LL + + LQ S + ++ + G ++
Sbjct: 793 MLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDL 851
Query: 747 KVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
V E D VV S D+ + + AG VESG + IL+V + V +SL
Sbjct: 852 VVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLH 911
Query: 806 TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
+ NR+A+K ++ E HQ AIV+ +++++ + SL E H +
Sbjct: 912 QDLV--------NRKARKLRKGSE-------HQ---AIVQHLEKSFAIASLVETGHLAAF 953
Query: 866 ASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-- 922
+ S N T +F ++ GQ V T+ T L + A T + K ++
Sbjct: 954 SLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETV 1013
Query: 923 ---------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 967
KK + +G +V + IKP + + G G IH + + DD
Sbjct: 1014 DEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVP 1073
Query: 968 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIKPSML--- 1011
+ K+G+TVTAR+I DM K+F + ELS++PS L
Sbjct: 1074 EGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVRPSELEDG 1128
Query: 1012 -TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPS 1067
T S E+ GQ VT ++ Y V +W + I+ ++ ++ +L ++
Sbjct: 1129 HTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFK 1188
Query: 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIHEG 1126
L+ ++F +G+A+ V+ + K LL L L P + + EG
Sbjct: 1189 VLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHK------------------LEEG 1230
Query: 1127 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186
++ GR+ K+ GL V F ++ + + Y E PL +
Sbjct: 1231 EVAMGRVVKVTPN-EGLTVSFP--------FGKIGTVSIFHMSDSYSE---TPLEDFVPQ 1278
Query: 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
+ V+C +L + V + LSLR SS + + + V+ P + I+D+
Sbjct: 1279 KVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQ 1325
Query: 1247 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVL 1300
+++GYV ++ G F L + V L+ S SP K+ P GKL+ RVL
Sbjct: 1326 LLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYNKHLPEGKLLTARVL 1382
Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360
+ VE++ D+ + + LS G + + ++ E+ E N
Sbjct: 1383 RLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEAEERDQKGEKKNQK 1437
Query: 1361 GLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410
++ ++ V+ + R G + + + E+ R+S K +
Sbjct: 1438 RNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGSEQERVSKKPKKAGLS 1493
Query: 1411 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1470
+ D+L E E EE + E + + ++ G + + +
Sbjct: 1494 EEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSGFAWNVGLDSLTPA 1549
Query: 1471 VPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLL 1530
+PPL + D E+ DEK ++ KK K+ERE E + AE+ L
Sbjct: 1550 LPPLAESSDSEE--------------------DEKPHQATIKKSKKERELEKQKAEKELS 1589
Query: 1531 EKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1582
+ P + D+F+RLV SSPNSS +W++YMAF L ++EKAR++AERAL+TI
Sbjct: 1590 RIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTI 1649
Query: 1583 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1642
+ REE EKLN+WVA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+
Sbjct: 1650 SFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKF 1707
Query: 1643 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQT 1701
+ A EL +M+K+F+ VW++ LL++ Q V+QRAL LP +H+ I++
Sbjct: 1708 QEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKF 1767
Query: 1702 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1761
A LEF+ G A+R +++FE LS YPKRTD+WS+Y+D I+ G +R +FER I LSL
Sbjct: 1768 AQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLA 1827
Query: 1762 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
PK+MKF FK+YL+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1828 PKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864
>sp|O74835|RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rrp5 PE=1 SV=1
Length = 1690
Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust.
Identities = 390/1393 (27%), Positives = 655/1393 (47%), Gaps = 198/1393 (14%)
Query: 475 VQGFAPRSEL------GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-----K 523
+ GFA S L G+ P P Y V + RI++ LSF +
Sbjct: 424 ISGFAHISRLSDKKVAGISPNSGP---YKVDSTHEARIINYSYVDNLYILSFQQSVLNQQ 480
Query: 524 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATV 579
R+ + +++G V G + + P +VV I++G + G +P+ H+AD E
Sbjct: 481 FLRIED---IEVGQFVDGTIAKLIPQGIVV-TISEGIN-GLVPSTHMADIALQFPERRFK 535
Query: 580 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 639
+ S +K ++L + +LL+ K SL+N+ L D P + G + I
Sbjct: 536 VGSSVKC-----RVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIF 590
Query: 640 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
E G V F + F P S+ + D + + VGQ++ I+ + E ++ + ++
Sbjct: 591 EDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQ 650
Query: 700 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 759
S DA L+ E GSV+ G V + + V+V
Sbjct: 651 ---SWDAK-----------------------RLERFENIKAGSVLSGIVLQKTEDSVIVD 684
Query: 760 FEEHSDVYGFITHHQLAGATVESGSVI-----------QAAILDVAKAERLVDLSLKTVF 808
+ V G IT QL + S + + +L +++L+ LSLK
Sbjct: 685 LGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSL 742
Query: 809 IDRFREANSNRQAQKKKRKREASKDLGV---HQTVNAIVEIVKENYLVLSLPEYNHSIGY 865
++ +E NR +E K G T VE + LV +P+ S Y
Sbjct: 743 VEAAKE---NRMPINITDLKEGIKYFGFVRNATTFGVFVEFC--DGLVALVPKAYISEEY 797
Query: 866 ASVSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSSTAGRLLLLLKAISET 913
V P + QSV +++ P + + + +++ +
Sbjct: 798 VPV--------PSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDI 849
Query: 914 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 971
+ + KK Y G + A +T K +L + HGR+ ++EV D+ +V+
Sbjct: 850 DNPVDETIKKTYDYVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPN 909
Query: 972 NLFSNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLL 1021
F G + R++ + + K K FL ELS++PS+L + K
Sbjct: 910 KPLKRFHKGDKIRVRVLGIHDSRNHKFLPISHRVSPKQFL-ELSVRPSILNMEPFSMK-- 966
Query: 1022 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1081
E G VTG+V V E ++++ + ++ ILD + EL Q+ F +GKA
Sbjct: 967 --EPQFKKGDEVTGFVNNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKA 1024
Query: 1082 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1141
+ +V +N E + + P Q G + T G + G+++ +
Sbjct: 1025 IKCYV--VNAEDSITLSAIGPLQ-GFENLT-------------PGSRLVGKVTNV--NEA 1066
Query: 1142 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
G ++Q+ H+ GRV ++ +D+ P + + V VL + R
Sbjct: 1067 GAILQLPGHMSGRVSRIDM-----------FDDYDILPETKFTRNNLVGVCVLSVDVPNR 1115
Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
+S+ NS S V+ K + ++DL I +G+V NV ++G F
Sbjct: 1116 KV------------ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQGLF 1163
Query: 1262 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
+ + L A+V + L D +++ + F + +LV G ++ ++ SKR+E++LK S +
Sbjct: 1164 VTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQS--KIK 1221
Query: 1322 SQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETI 1379
SEI +++ VG + G + +V YG+ I I+ T N+VGLCH SE+++ V NI +
Sbjct: 1222 DSSEITKTFADIAVGSNLDGTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKL 1281
Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKSSYFKN--------DADNLQMSSEEESDEAIEEV 1431
Y +G+KV+ +L VD EKRRI+LG+KSSYF + + ++++M SE++SD + EV
Sbjct: 1282 YSSGDKVRAHVLDVDSEKRRIALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEV 1341
Query: 1432 GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD--MDNGI 1489
GS + D++SE+ +L A E ++E+P NG
Sbjct: 1342 GSKD---------------DVQSEEVENLESAGDED-----------EEEEPSALQANGF 1375
Query: 1490 SQNQGHT--DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRS 1547
G T D+ E + ++ K ++ + R +E + P T +FER + S
Sbjct: 1376 DWTDGSTVFDKLADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEIPSTAADFERQLLS 1435
Query: 1548 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1607
SPNSS +WI YMA+ L++ ++++AR + +RAL TIN REE+EKLN+W+A NLE YG
Sbjct: 1436 SPNSSLLWISYMAYHLNLNELQEAREVGKRALSTINYREEDEKLNVWMALLNLEVAYGT- 1494
Query: 1608 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRV 1667
E+++ +VF+ A YCD V+ L G+ + + LADE + M+K FK VW++
Sbjct: 1495 -EDSLKEVFKEACAYCDALIVYEKLCGILIKGGKVDLADEYMQLMLKNFKQVPSVWIQYA 1553
Query: 1668 QRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1726
LL + E +++R+L SLP+ +H+ I + AILEFKNG +RGR++FEG+LS YP
Sbjct: 1554 TFLLNNDKAEKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPERGRTIFEGLLSSYP 1613
Query: 1727 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1786
KR DLW++ +D E++ D ++R LF+R ++L+L KK KF FKK+L YEK++G++E E
Sbjct: 1614 KRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKWLAYEKNIGDDEGAE 1673
Query: 1787 YVKQKAMEYVEST 1799
VK++A+EYV +
Sbjct: 1674 QVKRRAIEYVSES 1686
Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 205/735 (27%), Positives = 340/735 (46%), Gaps = 56/735 (7%)
Query: 3 LWGVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDNEIEAN-----EDNL-- 48
+ G +A++N DL + LP L G + +D LD I DN E N ED L
Sbjct: 112 ILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSI-DNHAEDNAATEEEDGLNQ 170
Query: 49 ---LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ--EGMVL 102
L ++ VGQ V V L ++ + GKR I LSL+ G + E G ++
Sbjct: 171 IPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDA-NGSAPEAADFVAGSMI 229
Query: 103 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 162
A V SIEDHG + G+ ++TGFL + ++ N V+ LL V+ DR + +L
Sbjct: 230 QAVVSSIEDHGIVFDIGINNYTGFLSKKHI--NDFPFVEGQSLLCSVISKEDR---IFHL 284
Query: 163 SSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 221
S ++ TK L+ + S+ ++PG ++ V I E+GV+ ++ T DI+H
Sbjct: 285 S-----LTATSTKALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMGVVDVTSDIYH-S 338
Query: 222 NTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVG-----LTLNPYLLHNRAPPSHVKV 273
+ + ++ + K V AR+LFV DP AV LT N + N P + +
Sbjct: 339 SPVKGEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSFLPHVLTFN-FATPNTPHPDQLDI 397
Query: 274 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVR 332
G I + +KV V LG+ D+ +S A+++ +SD + YK S R
Sbjct: 398 GFIVNAAKVTYVSSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNSGPYKVDSTHEAR 457
Query: 333 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 392
I+ + +++ L + S D++ G V G + + G +V G+ L
Sbjct: 458 IINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLV 517
Query: 393 PLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEAT 450
P HM++ + P ++FKVG+ + RVL V KR+ +T KK+L+ + L ++ Y +AT
Sbjct: 518 PSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQAT 577
Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
T G + +I + G V FYN V+ F P SE+ + + VGQ + I+S
Sbjct: 578 PGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCD 637
Query: 511 PASRRINLSFMMK---PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 567
P +R++ + + R+ + +K GS++SG+V T ++V+V + K G I
Sbjct: 638 PENRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDK--VTGVITL 695
Query: 568 EHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ--LPSDA 622
L D L + + + ++ + ++LVL ++S L LS K SL+ +A++ +P +
Sbjct: 696 GQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRMPINI 755
Query: 623 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
+ + G+V N G FV F L P++ + S Y QSV
Sbjct: 756 TDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAYISEEYVPVPSAVYKPQQSVTCVC 815
Query: 683 LDVNSETGRITLSLK 697
L V + +S K
Sbjct: 816 LSVELSQEKAFMSFK 830
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 192/898 (21%), Positives = 342/898 (38%), Gaps = 174/898 (19%)
Query: 5 GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 64
G +A++ + +V+ + G+ GL + D L F VG V C VL
Sbjct: 495 GTIAKLIPQGIVVTISEGINGLVPSTHMADIAL---------QFPERRFKVGSSVKCRVL 545
Query: 65 QLDDDKKEIGKRKIWLSLRLSLLYKGLSL----ETVQEGMVLTAYVKSIEDHGYILHFGL 120
+ + ++++ L+L+ SLL L L E G + I + G I+ F
Sbjct: 546 STN-----VLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIFEDGAIVEF-Y 599
Query: 121 PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV-----TK 175
S FLP + ++E D + + +T V +S DP+ V +
Sbjct: 600 NSVRAFLPVSEMSEAYIRDAREHF-------KVGQTLSVTIVSCDPENRKMRVGCREQSW 652
Query: 176 DLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 234
D K + + + G ++S V E+ V++ TG + + L + D N
Sbjct: 653 DAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLCD--------GDLN 704
Query: 235 QHKKVNAR-----------ILFVDPTSRAVGLTLNPYLLH----NRAPPSHVKVGDIYDQ 279
+ KV + +L D + + + L+L L+ NR P + + D+ +
Sbjct: 705 KCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRMP---INITDLKEG 761
Query: 280 SK---VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL-- 334
K VR G+ ++ V A V + ++EE V YK V L
Sbjct: 762 IKYFGFVRNATTFGVFVEFCDGLV---ALVPKAYISEEYVPVPSAVYKPQQSVTCVCLSV 818
Query: 335 ------GFRHLEGLATGILKASAF------------EGLVFTHSDVKPGMVVKGKVIAVD 376
F + LA KA F E + T+ D G + V +
Sbjct: 819 ELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTY-DYVAGKITWAVVTSAK 877
Query: 377 SFGAIVQFPGGVKALCPLPHMSEF--EIV---KPGKKFKVGAELVFRVLGVKSKR----I 427
+ V V + + + EIV KP K+F G ++ RVLG+ R +
Sbjct: 878 ASQLNVDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKIRVRVLGIHDSRNHKFL 937
Query: 428 TVTHK-------KTLVKSKLAILSSYAEATDRLI----THGWITKIEKHGCFVRFYNGVQ 476
++H+ + V+ + + ++ + G++ + K +V V
Sbjct: 938 PISHRVSPKQFLELSVRPSILNMEPFSMKEPQFKKGDEVTGFVNNVSKECVWVSLTPSVN 997
Query: 477 GFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 533
G P +L D E +S+ + +G+ +KC +++ A I LS + P + E +L
Sbjct: 998 GRIPILDLTTDVK-ELNSLQKHFFLGKAIKCYVVN---AEDSITLS-AIGPLQGFE-NLT 1051
Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ- 592
LV V +V A++ G+ G + + D + I P +F +
Sbjct: 1052 PGSRLVGKVTNVNEAGAILQL---PGHMSGRVSRIDMFDDYD--------ILPETKFTRN 1100
Query: 593 ------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV--------VHGYVCNI 638
+L +D + + LSA+ S Q P + NSV G+VCN+
Sbjct: 1101 NLVGVCVLSVDVPNRKVALSARNS---RTQSQPVEIKDKEINSVDDLKIGDICRGFVCNV 1157
Query: 639 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
G FV L + D D ++V Q V+ +I+ +++++ RI +SLKQ
Sbjct: 1158 ANQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQ 1217
Query: 699 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 758
S D+S + + F +GS ++G V + D+GV++
Sbjct: 1218 SKIK--DSSEITKTF----------------------ADIAVGSNLDGTVVKVGDYGVLI 1253
Query: 759 SFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLKTVFI 809
+ ++ G ++A A V SG ++A +LDV +R + L LK+ +
Sbjct: 1254 RIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLKSSYF 1311
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 117/517 (22%), Positives = 194/517 (37%), Gaps = 101/517 (19%)
Query: 624 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP----------RSKAVDG---------- 663
+I P S++ G + I V LTG+ P R ++D
Sbjct: 105 NITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNAATEE 164
Query: 664 -----QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 718
Q DL Y VGQ VR ++ + SE T + H L
Sbjct: 165 EDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKT---------------GKRHIELS-- 207
Query: 719 IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY-GFITHHQLAG 777
L+ NGS + + F+ GS+I+ V D G+V F+ + Y GF++ +
Sbjct: 208 ---LKPQDANGSAPEAAD-FVAGSMIQAVVSSIEDHGIV--FDIGINNYTGFLSKKHIND 261
Query: 778 ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
G + ++ ++K +R+ LSL ++K L V
Sbjct: 262 FPFVEGQSLLCSV--ISKEDRIFHLSLTAT----------------------STKALEVM 297
Query: 838 QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF---PQK------QFLNGQSVI 888
+V AI+ N LV + E Y V D + + P K +F +SV
Sbjct: 298 PSVQAILPGDYINVLVTDIKESGVIAKYMGVVDVTSDIYHSSPVKGEDLEDKFQLAKSVP 357
Query: 889 ATVM-ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL 947
A V+ +P + L + T ++ D+G +V A L +
Sbjct: 358 ARVLFVIPGDPPKIAVSFLPHVL--TFNFATPNTPHPDQLDIGFIVNAAKVTYVSSSLGV 415
Query: 948 KFGIG---FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1004
+G G HI+ ++D K + +K+ T ARII S + L+ L
Sbjct: 416 FCDVGVPEISGFAHISRLSDKKVAGISPNSGPYKVDSTHEARIINYSYVDN-----LYIL 470
Query: 1005 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1064
S + S+L ++ D+ +GQ V G + K+ + ++TIS + + +
Sbjct: 471 SFQQSVL------NQQFLRIEDIEVGQFVDGTIAKLIPQGIVVTISEGING--LVPSTHM 522
Query: 1065 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1101
LQ +RRF +G +V VLS N +K + L L+
Sbjct: 523 ADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLK 559
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 50/279 (17%)
Query: 2 KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSC 61
+L G V VNE ++ LPG + G D D + D L T F LV
Sbjct: 1055 RLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFD---------DYDILPETKFTRNNLVGV 1105
Query: 62 IVLQLDDDKKEIGKRKIWLSLRLS------LLYKGLSLETVQE---GMVLTAYVKSIEDH 112
VL +D + RK+ LS R S + K + +V + G + +V ++ +
Sbjct: 1106 CVLSVD-----VPNRKVALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQ 1160
Query: 113 GYILHFGLPSFTGFLPRNNLAE--NSGI-DVKPGL----LLQGVVRSIDRTRKVVYLSSD 165
G + G + R + E ++ I D KP L++G + ID K + +S
Sbjct: 1161 GLFVTIG----HNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLK 1216
Query: 166 PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 223
+ S +TK I++ + G +V + + GV++ GT +I L +
Sbjct: 1217 QSKIKDSSEITKTFADIAVGSNLDGTVV-----KVGDYGVLIR----IDGTDNIVGLCHK 1267
Query: 224 FPTT-----NWKNDYNQHKKVNARILFVDPTSRAVGLTL 257
N Y+ KV A +L VD R + L L
Sbjct: 1268 SEIADAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGL 1306
>sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RRP5 PE=1 SV=1
Length = 1729
Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust.
Identities = 380/1314 (28%), Positives = 630/1314 (47%), Gaps = 193/1314 (14%)
Query: 556 IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 614
I G K ++P H++D + K G + ++ N N+ ++ K SL+N
Sbjct: 530 IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587
Query: 615 AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668
+LP +A +I N + GC + F G L+GF P S+ +
Sbjct: 588 DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647
Query: 669 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 728
+ +GQ+V +LDV+++ RI + C K++ Q+++
Sbjct: 648 EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686
Query: 729 GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 782
+ +E + G ++I V E V+V + + G I L+ + +E
Sbjct: 687 DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741
Query: 783 -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 837
G+ + ++D R+ ++SLK+ I ++A ++ +KD+ +H
Sbjct: 742 KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798
Query: 838 QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 892
+ +I + V N ++ L LP Y +S K F QSV TV
Sbjct: 799 AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847
Query: 893 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 942
L + + LL LKA S E K +GS+V+A+I +K
Sbjct: 848 LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907
Query: 943 LELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIA----KSNK--- 993
+L + HGR+ I EV D + + SN+K + +II KS+K
Sbjct: 908 NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967
Query: 994 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1051
+ K+ + ELS+KPS L E+ +K L E ++IGQ +TG+V LTIS
Sbjct: 968 ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024
Query: 1052 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
LKA++ +LD A S E + F +G A+ V SI++E F + I
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076
Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
VDI NM T I GD + GR+ KI +++ +G + G + F ++D L+
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTG-ISF-------ITDALN 1122
Query: 1171 GYD----EGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226
+ E D ++ + VL + + +ELSLR + S S
Sbjct: 1123 DFSLTLKEAFEDKIN-----NVIPTTVLSVDEQNK---KIELSLRPATAKTRSIKSH--- 1171
Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
EDL IV G VKNV KG F+ LSRK++A V +S LSD Y++ +
Sbjct: 1172 -------------EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWK 1218
Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVI 1339
K + + V G+V++ + S R+ +TL+ +SEIN S++ GD+
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFE 1269
Query: 1340 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1398
G IK V +G+F+ ++NT N+ GL H++E+++ +++ ++ G++VK +LK + EK+
Sbjct: 1270 GTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK 1329
Query: 1399 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1458
+ISL +K+S+F +A +++S + ++++ + ++ ++ D D ES+ G
Sbjct: 1330 QISLSLKASHFSKEA---ELASTTTTTTTVDQLEKEDEDEVMADA--GFNDSDSESDIGD 1384
Query: 1459 SLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK-- 1515
+ D +P+ +G+S + G A +D+ +++
Sbjct: 1385 Q---------------NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQED 1429
Query: 1516 --EEREQEIRAAEERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1566
E ++ + + +E +++ AP + +FERL+ +PNSS VW+ YMAF L ++
Sbjct: 1430 FTENKKHKHKRRKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLS 1489
Query: 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626
++EKAR +AERAL+TIN REE EKLNIW+A NLEN +G EE + +VF RA QY D
Sbjct: 1490 EIEKARELAERALKTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSY 1547
Query: 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQR 1684
+H LLG+YE +E+ A EL KKF +W+ L+ +E + ++
Sbjct: 1548 TIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGN 1607
Query: 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744
AL +LP+ HI+ + + A LEF G +RGRS+FEG++++ PKR DLW++Y+DQE++ D
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKD 1667
Query: 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
+ LFER I+ + K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1668 KKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721
Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 286/1259 (22%), Positives = 541/1259 (42%), Gaps = 178/1259 (14%)
Query: 3 LWGVVAEVNEKDLVICLPGGLRG---------------------LARAADALD----PIL 37
L G ++ + ++DL I G+ G + DA D +
Sbjct: 122 LLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAADEKKSKVE 181
Query: 38 DNEIEANED--------NLLPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLR 83
D E E+++D N LP + FH+GQ + C V++ L+ K+ K++I L++
Sbjct: 182 DAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELTIE 241
Query: 84 LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 143
S + + V+ + A VKSIEDHG L GLP FTGF+ + + + PG
Sbjct: 242 PSSVNIYADEDLVKSTSIQCA-VKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKL--LPG 298
Query: 144 LLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 202
+ G + + DR+ + +++D S K + SID ++PG +V +SI +NG
Sbjct: 299 AVFLGNITKKSDRS---IVVNTD---FSDKKNKITQISSIDAIIPGQIVDLLCESITKNG 352
Query: 203 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262
+ +G V++ HL+ TF + K+ + + RI+ L
Sbjct: 353 IAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFVIGSSIRCRII---------------ACL 396
Query: 263 HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV-------------STPAYVTIS 309
N+ S KV + + +++++ L + + P+ S Y+ +
Sbjct: 397 ENK---SGDKVLILSNLPHILKLEDALRSTEGLDAFPIGYTFESCSIKGRDSEYLYLALD 453
Query: 310 D-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 364
D V V ++E S R+LG+ ++ + + +D+
Sbjct: 454 DDRLGKVHSSRVGEIENSENLSS----RVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPI 509
Query: 365 G-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
G ++ ++ +V S G ++ F G KA P H+S+ +V P +KFK+G+++ RV+ V
Sbjct: 510 GELLPSCEITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISV 569
Query: 423 KSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYNG 474
S+ + VT KK+LV ++L ++S+Y A + T I + +GC + F+ G
Sbjct: 570 NSRGNVHVTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGG 629
Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 529
+ GF P SE+ P +GQ V +++ RRI + + + ++
Sbjct: 630 LSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRIIATCKVSNEQAAQQKDTI 689
Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGY 588
+++V ++++ V T ++V+V + G +G I HL+D +E ++ G
Sbjct: 690 ENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-RGVIYVGHLSDSRIEQNRAQLKKLRIGT 748
Query: 589 EFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETG 642
E L++ D + +S K SLI A++ LP D ++ + +H Y+ +I + G
Sbjct: 749 ELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETLPLTYDDVKDLNKDVPMHAYIKSISDKG 808
Query: 643 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
FV F G+ G S AVD + D+SK +Y+ QSV +L + + + LSLK
Sbjct: 809 LFVAFNGKFIGLVLPSYAVDSRDIDISKAFYINQSVTVYLLRTDDKNQKFLLSLKAPKVK 868
Query: 703 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSF 760
+E+ + S +K + IGS+++ K+ + N V+++
Sbjct: 869 EEKKKVESN---IEDPV---------DSSIKSWDDLSIGSIVKAKIKSVKKNQLNVILAA 916
Query: 761 EEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVAKAERLVDLSLKTVFI 809
H D Y IT + + + VI+ I+ DV K+ + + ++ K
Sbjct: 917 NLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV-KSHKFLPITHKISKA 975
Query: 810 DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASV 868
+ + + K+ ++ +++ + Q + V N+L L++ P I +
Sbjct: 976 SVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWLTISPVLKARISLLDL 1035
Query: 869 SDYNTQKFPQKQFLNGQSVIATVMALP-SSSTAGRLLLLLKAISETETSSSKRAKKKSSY 927
+D N F + N +SV AL ++ R + AI ++ + S+
Sbjct: 1036 AD-NDSNFSE----NIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDIN-----MSTI 1085
Query: 928 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987
VG + + +I + L G G IT+ +D S ++ F + KI + +
Sbjct: 1086 KVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFED-KINNVIPTTV 1144
Query: 988 IA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1045
++ + NK ELS++P+ I S D+ G+ V G V V+++
Sbjct: 1145 LSVDEQNKK-------IELSLRPATAKTRSIKS-----HEDLKQGEIVDGIVKNVNDKGI 1192
Query: 1046 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1105
+ +SR ++A F+ S S L+E+++ + + V G V++ +++ + + L LR +
Sbjct: 1193 FVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSR-ISLTLRESEI 1249
Query: 1106 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKN 1162
K + +D I GD+ G I + G+ V++ ++ G H TE+ +
Sbjct: 1250 NGDLKVLKTYSD-----IKAGDVFEGTIKSVTD--FGVFVKLDNTVNVTGLAHITEIAD 1301
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 13/212 (6%)
Query: 498 VGQVVKCRIMSSIPASRRINLSFMMKPTRV----SEDDLVKLGSLVSGVVDVVTPNAVVV 553
+ V+ ++S +++I LS + S +DL K G +V G+V V + V
Sbjct: 1136 INNVIPTTVLSVDEQNKKIELSLRPATAKTRSIKSHEDL-KQGEIVDGIVKNVNDKGIFV 1194
Query: 554 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP-GYEFDQLLVLDNESSNLLLSAKYSLI 612
Y+ K + +P L+D + K KP Y +++ D E S + L+ + S I
Sbjct: 1195 YLSRK--VEAFVPVSKLSDS--YLKEWKKFYKPMQYVLGKVVTCD-EDSRISLTLRESEI 1249
Query: 613 NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSK 670
N ++ S I V G + ++ + G FV+ +TG A ++ D + DLS
Sbjct: 1250 NGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSA 1309
Query: 671 TYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
+ VG V++ +L N E +I+LSLK S S
Sbjct: 1310 LFGVGDRVKAIVLKTNPEKKQISLSLKASHFS 1341
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 136/330 (41%), Gaps = 37/330 (11%)
Query: 92 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKP-GL 144
SLE + G LT +V + + L P + +LA+N V P G
Sbjct: 996 SLEEINIGQELTGFVNNSSGNHLWLTIS-PVLKARISLLDLADNDSNFSENIESVFPLGS 1054
Query: 145 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 204
LQ V SIDR V + K I++ + G + RV I E V+
Sbjct: 1055 ALQVKVASIDREHGFV----------NAIGKSHVDINMSTIKVGDELPGRVLKIAEKYVL 1104
Query: 205 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN----ARILFVDPTSRAVGLTLNPY 260
L TG I N F T K + K+N +L VD ++ + L+L P
Sbjct: 1105 LDLGNKVTGISFITDALNDFSLT-LKEAFED--KINNVIPTTVLSVDEQNKKIELSLRPA 1161
Query: 261 LLHNRAPPSH--VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 318
R+ SH +K G+I D D+G+ + L A+V +S +++ +++
Sbjct: 1162 TAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYL-----SRKVEAFVPVSKLSDSYLKE 1216
Query: 319 LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 375
+K YK V +++ + + L+ S G ++ T+SD+K G V +G + +V
Sbjct: 1217 WKKFYKPMQYVLGKVVTCDE-DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSV 1275
Query: 376 DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
FG V+ V + L H++E KP
Sbjct: 1276 TDFGVFVKLDNTVN-VTGLAHITEIADKKP 1304
>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
Length = 1874
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 394/1392 (28%), Positives = 648/1392 (46%), Gaps = 159/1392 (11%)
Query: 1 MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
M++ G V EVNE +L I LP GL+G + + D + NE A E+ L LP +F
Sbjct: 84 MRILGCVKEVNELELAISLPNGLQGYVQVTEICDAYTEKLNEQVAQEEPLQDLVGLPELF 143
Query: 54 HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
G LV C+V LD K K+ + LSL + + LS ET++ GM+LT V S+EDHG
Sbjct: 144 SPGMLVRCVVSSLDTTKG--SKKNVMLSLNPKNVNRVLSAETLKPGMLLTGTVSSLEDHG 201
Query: 114 YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
Y++ G+ FLP E N G +K G L ++ + +R VV LS
Sbjct: 202 YLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLIEEVKGSRGVVTLSIGHSE 261
Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
VS + + + +++ L+PG++V +VQ + G+ L FL++F+G VD HL T
Sbjct: 262 VSAAIATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDPKKAGTY 321
Query: 229 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
+ N ++V A +L V P +RAV L+L P L P + + ++G + D V
Sbjct: 322 FSN-----QQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLLCQQLGAVLDDVPVQGF 376
Query: 286 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
G + T AY + ++ + + +K G+ + RI+ + ++ LA
Sbjct: 377 FGSAGATFKLKD---GTLAYARRNHLSNSKKTFKPEAFKPGNTHKCRIIDYSQMDELALL 433
Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
L+ S E + D+KPG +VKGKV+ + G +V+ ++ L P H+++ I P
Sbjct: 434 SLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNP 493
Query: 406 GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
KK+ VG E+ RVL K+K++ +T KKTLV+SKL ++ Y +A L THG+I +++
Sbjct: 494 EKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVK 553
Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 522
+GC V+FYN VQG PR EL + +P S+++ GQVVK +++ P+ R+ LSF +
Sbjct: 554 DYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613
Query: 523 -KPTRVSEDDLVKLGSLVSG--VVDV----VTPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
P + E K VS + DV T + + V V+ G +PT HL+DH+
Sbjct: 614 SDPKQEGEGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIP-GFLPTAHLSDHVT 672
Query: 576 HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHG 633
+ ++ ++ G ++L L +LL K +L+++ + Q P S IHP ++ G
Sbjct: 673 NGPLLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIHPGMLLIG 732
Query: 634 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 693
+V NI + G FV+F L+G AP++ D S + GQ+V + + +V+ E R+
Sbjct: 733 FVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRML 792
Query: 694 LSLKQSCCSSTDASFMQEHF---LLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVH 749
LSL+ S C+ D + LEE+ + + S L + + G ++ +V
Sbjct: 793 LSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPGMALDLEVQ 852
Query: 750 ESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
E + G V+ F E V G + + + AG +E G +A IL+V + V +SL
Sbjct: 853 EVLEDGSVL-FSE-GPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDMLKLEVHVSLCH 910
Query: 807 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
+ NR+A+K K+ + + AIV+ ++E++ V SL E H ++
Sbjct: 911 DLV--------NRKAKKLKKGSD----------LQAIVQHLEESFAVASLVETGHLAAFS 952
Query: 867 SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK--- 922
S N T +F ++ GQ V T+ T LLL ++ + T R
Sbjct: 953 LTSHLNDTFRFDSEKLQVGQGVSLTLQTTEPGVTG--LLLAIEGPAAKRTMRQTRKDSET 1010
Query: 923 ----------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 966
KK + +G +V + IKP + + G G IH + + DD
Sbjct: 1011 VDEDEEVDPALVVGTVKKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDD- 1069
Query: 967 SNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML--- 1011
V + + K+G+ VTAR+I DMK FL ELS++PS L
Sbjct: 1070 VPVGTSPTAKLKVGKKVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSELKED 1126
Query: 1012 ---TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEP 1066
T++ L + GQ VT ++ Y + +W + I+ ++ ++ +L ++
Sbjct: 1127 GHTTLNTHSVSPLEKIKQYQPGQTVTCFLKKYNMVKKWLEVEIAPDIRGRIPLLLTSLSF 1186
Query: 1067 SELQEFQRRFHIGKAVTGHVLSINKEKK--LLRLVLRPFQDGISDKTVDISNDNMQTFIH 1124
L+ ++F IG+A+ V+ + K L ++ P + +
Sbjct: 1187 KVLKHPDKKFQIGQALKATVVGPAESSKAFLCLSLIGPHK------------------LK 1228
Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
+G++ GR+ K+ + GL V +GRV + VSD S F P
Sbjct: 1229 KGEVAMGRVVKV-TPKEGLTVSFP---FGRVGRVSM--FHVSDSYSETHLEDFVP----- 1277
Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
Q V+C VL + V + LSLRS S TN S D + IEDL
Sbjct: 1278 -QQVVRCYVLSAATPV-----LTLSLRS-----SRTNPETKSKITDP---EINSIEDLEE 1323
Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP-EKEFPIGKLVAGRVLS 1301
+++G+VK+V G + L + ++S + +P ++ P GKL+ +VL
Sbjct: 1324 GQLLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLR 1383
Query: 1302 VEPLSKRVEVTL 1313
+ VE++L
Sbjct: 1384 LNHQESLVELSL 1395
Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/328 (44%), Positives = 220/328 (67%), Gaps = 6/328 (1%)
Query: 1475 EVNLDDEQPDMDNGISQNQGHTDEA--KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1532
+V LD P + + DE + +K ++ ++ EK++ E+E+ EE L++
Sbjct: 1542 DVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRIEEALMDP 1601
Query: 1533 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1591
P + ++F+RLV SSP+SS +W++YMAF L ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1602 GRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1661
Query: 1592 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1651
N+WVA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+ + A EL +
Sbjct: 1662 NVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNR 1719
Query: 1652 MIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710
M+K+F+ VW++ LL++ + E V+QRAL LP+ +H+ I++ A LEF+ G
Sbjct: 1720 MLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGD 1779
Query: 1711 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1770
A+R R++FE LS YPKRTD+WS+Y+D I+ G R +FER I LSL PK+MKF FK
Sbjct: 1780 AERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFK 1839
Query: 1771 KYLEYEKSVGEEERIEYVKQKAMEYVES 1798
+YL+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1840 RYLDYEKQHGSEKDVQAVKAKALEYVEA 1867
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1300
D+ P +V+G V + G + + +++ V +L+D +++PEK++ +G V RVL
Sbjct: 449 DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508
Query: 1301 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1357
+P +K++ +TLK +T +S++ ++ + G G I RV+ YG + N
Sbjct: 509 LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 563
Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
++ GL ELS ++V + E+++ G+ VKV +L + K R+ L +
Sbjct: 564 DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 611
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 131/614 (21%), Positives = 237/614 (38%), Gaps = 122/614 (19%)
Query: 775 LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 834
L+ T++ G ++ + + LVD+ + R ++AQ+ R++ L
Sbjct: 179 LSAETLKPGMLLTGTVSSLEDHGYLVDIG-----VSGARAFLPLQKAQEYIRQKNKGAKL 233
Query: 835 GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 894
V Q +N ++E VK + V++L SIG++ VS A +
Sbjct: 234 KVGQYLNCLIEEVKGSRGVVTL-----SIGHSEVS-------------------AAIATE 269
Query: 895 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 954
S T LL G +V+A++ ++ PL L LKF F
Sbjct: 270 EQSWTLNSLL------------------------PGLVVKAQVQKVTPLGLTLKFLSFFS 305
Query: 955 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1014
G + ++ K+ FSN Q V A ++ ++ LS++P L
Sbjct: 306 GLVDFMHLDPKKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPG 353
Query: 1015 EIGSKLLFEECDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQE 1071
++LL ++ + V G+ + L T++ + L ++P
Sbjct: 354 RPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA--- 410
Query: 1072 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1131
F G ++ ++ +L L LR I + +D I G +V G
Sbjct: 411 ----FKPGNTHKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKG 458
Query: 1132 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKC 1191
++ I G+VV++G + G V L +I + +P Y G DE VKC
Sbjct: 459 KVLTIKPH--GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVG--------DE---VKC 505
Query: 1192 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1251
+VL + ++L+ +L V++ + +D P + G+
Sbjct: 506 RVLLCDPKAKKLM---MTLKKTL--------------VESKLPAITCYDDAKPGLQTHGF 548
Query: 1252 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1311
+ V GC + + V LS YV PE F G++V VL+ EP +R+ +
Sbjct: 549 ILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLL 608
Query: 1312 TLK-TSDSRT----ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
+ + SD + SQ + +S + D+ + +++ + GL + + N+ G +
Sbjct: 609 SFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKV--LEKTKD-GLKVAVLPHNIPGFLPTA 665
Query: 1367 ELSEDHVDNIETIY 1380
LS DHV N +Y
Sbjct: 666 HLS-DHVTNGPLLY 678
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 169/402 (42%), Gaps = 69/402 (17%)
Query: 930 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 989
G+LV+ ++ IKP + +K G G + + D +++N + +G V R++
Sbjct: 453 GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508
Query: 990 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1045
L + K M+T+ + + SKL C D G + G++ +V +
Sbjct: 509 -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 557
Query: 1046 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--NKEKKLL--RLV 1099
++ ++ + L + Y P + F+ G+ V VL+ +KE+ LL RL+
Sbjct: 558 IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613
Query: 1100 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS--KILSGV-GGLVVQIGPH-LYGRV 1155
P Q+G Q+ + + G+++ K+L GL V + PH + G +
Sbjct: 614 SDPKQEG-----------EGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFL 662
Query: 1156 HFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1215
L + + PL + L D V C L +S R + +L S+++
Sbjct: 663 PTAHLSDHVTNGPL------LYHWLQTGDTLHRVLC--LSVSEE-RVLLCRKPALVSAVE 713
Query: 1216 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1275
G G++ + ++ P M++ G+VKN+ G F+ L +
Sbjct: 714 G----------------GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKA 757
Query: 1276 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
LSD +V S F G+ V +V +V+ +R+ ++L+ SD
Sbjct: 758 ILSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
+ S +H G ++IG +K ++ YG+F+ + L GL + LS+ V + + G+ V
Sbjct: 719 KSFSEIHPGMLLIGFVKNIKDYGVFVQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTV 777
Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
K+ VD+EK+R+ L ++ S
Sbjct: 778 VAKVTNVDEEKQRMLLSLRLS 798
>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2
Length = 1862
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 391/1405 (27%), Positives = 655/1405 (46%), Gaps = 164/1405 (11%)
Query: 1 MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIF 53
M++ G V EV+E +LV+ LP GL+G + + D NE A E+ L LP +F
Sbjct: 84 MRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYTQKLNEQVAQEEPLEDLLRLPELF 143
Query: 54 HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 113
G LV C+V LD E GK+ + LS+ + K LS + ++ GM+LT V S+EDHG
Sbjct: 144 SPGMLVRCVVSSLD--VTESGKKSVKLSVNPKRVNKVLSADALRPGMLLTGTVSSLEDHG 201
Query: 114 YILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 168
Y++ G+ FL E N G K G L VV + VV LS +
Sbjct: 202 YLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLTCVVEEVKSNGGVVSLSVEHSE 261
Query: 169 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 228
VS + + +++ L+PG++V +VQ + + G+ L+FLT+F G VD HL+
Sbjct: 262 VSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLE-----PK 316
Query: 229 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDIYDQSKVVRV 285
Y+ ++ V A IL V P +R V L+L P LH P + + ++G + D V
Sbjct: 317 KMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGF 376
Query: 286 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 345
+ G + + + AY +S +++ + + +K GS + RI+ + ++ LA
Sbjct: 377 FKNAGAIFRLKDGVL---AYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALL 433
Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
L+ S + D+K G VVKG V+A+ FG +V+ +K L P H+++ + P
Sbjct: 434 SLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNP 493
Query: 406 GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
KK+ G E+ RVL ++K++ +T KKTLV SKL++++ Y A L THG I +++
Sbjct: 494 EKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVIIRVK 553
Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 522
+GC V+FYN VQG P+ EL +P ++++ GQVVK ++S P+ R+ LSF ++
Sbjct: 554 DYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLL 613
Query: 523 KPTRVSEDDL---------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 573
+R + + V++G LV V T + V ++ + +PT HL+DH
Sbjct: 614 SDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHN-TPAFLPTPHLSDH 672
Query: 574 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 631
+ ++ ++ G ++L L ++LL K +L+++ + Q P S I P ++
Sbjct: 673 AANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLL 732
Query: 632 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
G+V I E G FV+F L+G +P++ D S+ + GQ+V + + +V+ R
Sbjct: 733 IGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQR 792
Query: 692 ITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-SSKHNGSELKWVEGFIIGSVIEGK 747
+ LSL+ S CS S SF+ LEE + S + ++ + G V++
Sbjct: 793 MLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTLADMTPGMVLDAV 852
Query: 748 VHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
VHE D VV S + D+ + + AG VE G + +L V + V +SL
Sbjct: 853 VHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPGQKKKVVVLHVDMLKLEVHVSLHQ 912
Query: 807 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
++R K ++ R++S+ HQ IV+ ++E++ V SL E H + ++
Sbjct: 913 DLVNR-----------KTRKLRKSSR----HQ---GIVQHLEESFAVASLVETGHLVAFS 954
Query: 867 SVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS----------ETET 915
+S N T F ++ GQ V T+ T L+L ++ + ++ET
Sbjct: 955 LISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTRMPVQRDSET 1012
Query: 916 SSSK--------------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 955
K ++KK+ S +G V I +K + + GF G
Sbjct: 1013 VDDKGEEKEEEEEEEEKEEENLTVKSKKRHSLAIGDKVTGTIKAVKATHVVVTLADGFVG 1072
Query: 956 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSI 1006
IH + + DD V + + K G+ VTAR+I K++K P F + ELS+
Sbjct: 1073 CIHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSV 1131
Query: 1007 KPSMLTVS----EIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFI 1059
+PS L S S+ E+ GQ VT + Y V +W + I ++ ++ +
Sbjct: 1132 RPSELKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDIRGRIPL 1191
Query: 1060 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISNDN 1118
L ++ L+ ++F +G+A+ V+ + + L L ++ P++
Sbjct: 1192 LLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR-------------- 1237
Query: 1119 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFD 1178
+ EG++ GR+ K++ GL V G+V L + Y E
Sbjct: 1238 ----LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSD--------SYSEA--- 1281
Query: 1179 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1238
PL + + V+C +L + V + LSLRSS + N ++ P +
Sbjct: 1282 PLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR------IEDP--EINS 1328
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-----FPIGK 1293
IED+ +++GYVK V I L + S++S+ PEKE P GK
Sbjct: 1329 IEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNGCLPEGK 1386
Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDS 1318
LV +VL V P+ +E++L SD+
Sbjct: 1387 LVTAKVLRVNPMKNLIELSLLPSDT 1411
Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)
Query: 1516 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1574
++ E+E+ EE L++ P + D+F+RLV SSPNSS +W++YMAF L ++EKAR++
Sbjct: 1573 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1632
Query: 1575 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1634
AERAL+TI+ REE EKLN+WVA NLEN YG+ +E++ KVF+RA+QY +P KV L L
Sbjct: 1633 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1690
Query: 1635 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1693
+Y ++E+ K A EL +M+K+F+ VW++ +L + Q G V+QRAL LP +
Sbjct: 1691 IYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1750
Query: 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753
H+ I + A LEF+ G +R +++FE LS YPKRTD+WS+Y+D I+ G +R +FE
Sbjct: 1751 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1810
Query: 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798
R I LSL PK+MKF FK+YL+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1811 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1855
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 49/331 (14%)
Query: 1080 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1134
+ V +L ++ +++RL LRP IS + + + + G G I
Sbjct: 325 QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384
Query: 1135 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
++ GV Y RV +SD ++ F P S + KC+++
Sbjct: 385 RLKDGVLA---------YARVSH-------LSDSKKAFNAEAFKPGSTH------KCRII 422
Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
+ S+ LSLR S+ + P + D+ +V+G V
Sbjct: 423 DYSQMDELAL---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLA 462
Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314
+ G + + ++ V +L+D +++PEK++ G V RVL +P +K++ +TLK
Sbjct: 463 IKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK 522
Query: 1315 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1374
+ T+ S I G G I RV+ YG + N ++ GL ELS H+
Sbjct: 523 KTLV-TSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIP 580
Query: 1375 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ ET++ G+ VKV +L + K R+ L +
Sbjct: 581 DPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 31/158 (19%)
Query: 70 KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF--GLPSFT--- 124
K +I KRK S++ ++ LSLE++ EGM + VK + + ++ GL F
Sbjct: 56 KLKIEKRKSIKSIKEK--FEILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVT 113
Query: 125 ----GFLPRNN--LAENSGID--------VKPGLLLQGVVRSIDRT---RKVVYLSSDPD 167
+ + N +A+ ++ PG+L++ VV S+D T +K V LS +P
Sbjct: 114 EVCDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLDVTESGKKSVKLSVNPK 173
Query: 168 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 205
V+K +S D L PGM+++ V S+ ++G ++
Sbjct: 174 RVNKV-------LSADALRPGMLLTGTVSSLEDHGYLV 204
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 1327 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1386
+LS + G ++IG +K ++ YG+F+ + L GL + +S+ V + G+ V
Sbjct: 721 KSLSEIQPGMLLIGFVKCIKEYGVFVQFP-SGLSGLSPKTIMSDKFVTTPSEHFVEGQTV 779
Query: 1387 KVKILKVDKEKRRISLGMKSS 1407
K+ VD+ K+R+ L ++ S
Sbjct: 780 VAKVTNVDESKQRMLLSLRLS 800
>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
SV=1
Length = 481
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 98/414 (23%), Positives = 186/414 (44%), Gaps = 64/414 (15%)
Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
++ + V++IGS F D +I G V G + KVD + LL I +
Sbjct: 5 TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64
Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
A+ + +P+E+ +G V VL+ KE K RL+L + +
Sbjct: 65 ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111
Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
+ ++ + + V G + +++ G GL++ IG + E++ + P G +
Sbjct: 112 AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168
Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
++ K++E+ + +V LS R+ L+ S S+
Sbjct: 169 --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202
Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
+ +L I +G V ++ + G F+ L +D V +S LS +++ P + +G
Sbjct: 203 ----LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDE 257
Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
V VL V+ +RV ++LK + + + + H +G IV G++ ++ +G F+
Sbjct: 258 VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312
Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+E + GL H+SEL+E HV+ + + G+ VK++ +D E+RRISL +K +
Sbjct: 313 VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)
Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
G +V+G ++ VD ++ + + P +S V P + VG E+ VL +
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95
Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
K R+ ++ K+ + + + E + + G + ++ K G + G++GF P S
Sbjct: 96 KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151
Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
E+ +P ++G+ ++ +I+ +++ SRR L R + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207
Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
G++ GVV + V + G G + L+ H++H + V++ G E +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261
Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
+L +D + + LS K + + + + H +V G V ++ G FVR +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317
Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
G S+ + + VG ++D++ E RI+LSLKQ+ T E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371
Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
F K M S G+ + +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)
Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
D I G I K+++ + +G P EL + +P+ + VG V+ +++
Sbjct: 34 NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93
Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
R+ LS + + + L + V G V V +++ + +G+ ++
Sbjct: 94 EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152
Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
+E V G E + +++ LD +N++LS + L + ++ S+ ++
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNN 205
Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
+ ++ G V +I+ G FV LG + G S+ S+ VG V +LD
Sbjct: 206 LQKGTIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264
Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
V+ + R++LSLK + F + H IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297
Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
GKV + FG V EE + G + +LA VE G ++D+
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355
Query: 798 RLVDLSLK 805
R + LSLK
Sbjct: 356 RRISLSLK 363
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 115/267 (43%), Gaps = 45/267 (16%)
Query: 1058 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1110
ILD + P+ L E +R + +IGK + ++ ++K + + L R + + +
Sbjct: 138 LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197
Query: 1111 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1170
+N+Q +G I G +S I++ G V +G + G VH +EL + P
Sbjct: 198 VRSEFLNNLQ----KGTIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250
Query: 1171 GYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1230
G DE V +VL++ V LSL+++ +
Sbjct: 251 VVQVG--------DE---VTVEVLDVDMDRE---RVSLSLKATQE--------------- 281
Query: 1231 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1290
P +H + + IV G V + G F+ + ++ V +S L++ +VE P++
Sbjct: 282 DPWRHFARTHAI--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVA 339
Query: 1291 IGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
+G +V+ ++ +R+ ++LK ++
Sbjct: 340 VGDDAMVKVIDIDLERRRISLSLKQAN 366
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 422
G +V GKV + FGA V+ G++ L + ++E + P + VG + + +V+ +
Sbjct: 294 GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDL 353
Query: 423 KSKRITVTHKKT-------LVKSKLAILSSYAEATDRLITHG-------WITKIEKH 465
+ +RI+++ K+ +K + SY E + + G W+ EK
Sbjct: 354 ERRRISLSLKQANEDYTEEFDPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGFEKQ 410
>sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=rpsA PE=3 SV=1
Length = 569
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 184/412 (44%), Gaps = 74/412 (17%)
Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
++IG+R G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316
Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
G ++I + G +H +E+ KNI DP ++G V+ VL
Sbjct: 317 PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361
Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
I + ++SL G+ T + P ++E E + V +KN
Sbjct: 362 SIQKD-----EGKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKN 401
Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
+T+ G F+ L ++ + +S++S V P + F G V +LSV+ SK++ + +
Sbjct: 402 LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461
Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
K + E+ VG + G + ++ ++G F+ ++N + GL HVSELSE
Sbjct: 462 KQLTPNPWDEIEVM----FPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPF 516
Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1425
IE + G+KV K++K+D + +++SL +K + + D + EE SD
Sbjct: 517 AKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)
Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
EG IV G+I++ + G GL+V IG + P S D + L Y
Sbjct: 133 EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175
Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
G+ + K+L+I+ R +V +S R L+ + ++L IE ++
Sbjct: 176 VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219
Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
+G VKN+T G F+ L +D + +++++ + P + + + + +LSV+
Sbjct: 220 GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278
Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
RV + LK + E G V G+I ++ YG FI IE + GL H
Sbjct: 279 EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333
Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
VSE+S ++ VD E + + G++V+V +L + K++ +ISLG+K + N DN++
Sbjct: 334 VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)
Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 385
G V V +L + EG + LK + G+ V ++ + ++GA V+
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412
Query: 386 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
G++ L + MS + V P + FK G + +L V +SK+IT+ K+ I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472
Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
+ +D G +TKI G FV NG++G SEL P + + +G V
Sbjct: 473 EVMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529
Query: 503 KCRIMSSIPASRRINLSF 520
+++ P ++++LS
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 100/477 (20%), Positives = 187/477 (39%), Gaps = 74/477 (15%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 416
S+V PG ++KG V+ + +V G+K+ +P MSEF + + VGAE+ +
Sbjct: 47 SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101
Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
+ + K + K T + IL+ E + I G IT+ K G V G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156
Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 530
F P S++ D + +VG+V + +I+ I RR ++ +++ R+S+
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213
Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
+ + +G G+V +T V ++ G T+ + H + M E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264
Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
+Q +L +D E + L K N + + P V G + ++ G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321
Query: 645 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
+ + G S+ + D ++ G V +L + + G+I+L LKQ+ +
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381
Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
D +EEK + IG + ++ ++G V E
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414
Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
H +I + G+ ++A IL V K + + L +K + + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 81/378 (21%), Positives = 136/378 (35%), Gaps = 66/378 (17%)
Query: 633 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 692
G V NI + G F+ G + G + + S+ + Q + IL V+ E GR+
Sbjct: 225 GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283
Query: 693 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 752
L LKQ +EH E+ E K + G + GK+ +
Sbjct: 284 ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRVRGKIVKLL 316
Query: 753 DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
+G + EE H ++ + V G ++ +L + K E + L LK
Sbjct: 317 PYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLK- 375
Query: 807 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
+ E +G+ T I + V P I +
Sbjct: 376 ------------QTKHNPWDNIEEKYPIGLRVTAE-IKNLTNYGAFVELEPGIEGLIHIS 422
Query: 867 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSS---TAGRLLLLLKAISETETSSSKRAKK 923
+S P + F G +V A ++++ S T G L E E
Sbjct: 423 DMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEVM------- 475
Query: 924 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 983
+ VGS + +T+I ++ G G IH++E+++ +E++ S IG V
Sbjct: 476 ---FPVGSDISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLS---IGDKV 529
Query: 984 TARIIAKSNKPDMKKSFL 1001
+A++I PD KK L
Sbjct: 530 SAKVIKLD--PDHKKVSL 545
>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN) GN=rpsA
PE=3 SV=2
Length = 481
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/414 (23%), Positives = 185/414 (44%), Gaps = 64/414 (15%)
Query: 1005 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1054
++ + V+++GS F D +I G V G + KVD + LL I +
Sbjct: 5 AVPSPQIAVNDVGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64
Query: 1055 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1114
A+ + +P+E+ +G V VL+ KE K RL+L + +
Sbjct: 65 ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111
Query: 1115 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1174
+ ++ + + V G + +++ G GL++ IG + E++ + P G +
Sbjct: 112 AWGTIEALKEKDEAVKGIVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168
Query: 1175 GQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
++ K++E+ + +V LS R+ L+ S S+
Sbjct: 169 --------------IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF--------- 202
Query: 1235 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
+ L I +G V ++ + G F+ L +D V +S LS +++ P + +G
Sbjct: 203 ----LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGNE 257
Query: 1295 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1353
V VL V+ +RV ++LK + + + + H +G IV G++ ++ +G F+
Sbjct: 258 VTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312
Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+E + GL H+SEL+E HV+ + + G+ VK++ +D E+RRISL +K +
Sbjct: 313 VEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/381 (21%), Positives = 150/381 (39%), Gaps = 53/381 (13%)
Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
D I G I K+++ + +G P EL + +P+ + VG V+ +++
Sbjct: 34 NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93
Query: 510 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 566
R+ LS + + + L + V G+V V +++ + +G+ ++
Sbjct: 94 EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDIGLRGFLPASL- 152
Query: 567 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 624
+E V G E + +++ LD +N++LS + L + ++ S+ +
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205
Query: 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684
+ ++ G V +I+ G FV LG + G S+ S+ VG V +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLD 264
Query: 685 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 744
V+ + R++LSLK + F + H IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297
Query: 745 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 797
GKV + FG V EE + G + +LA VE G ++D+
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355
Query: 798 RLVDLSLKTV---FIDRFREA 815
R + LSLK +I+ F A
Sbjct: 356 RRISLSLKQANEDYIEEFDPA 376
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/397 (20%), Positives = 166/397 (41%), Gaps = 48/397 (12%)
Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
G +V+G ++ VD ++ + + P +S V P + VG E+ VL +
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95
Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
K R+ ++ K+ + + + E + + G + ++ K G + G++GF P S
Sbjct: 96 KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGIVIEVVKGGLILDI--GLRGFLPAS 151
Query: 483 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
E+ +P ++G+ ++ +I+ +++ SRR L R + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207
Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
G++ GVV + V + G G + L+ H++H + V++ G E +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGNEVTVE 261
Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 651
+L +D + + LS K + + + + H +V G V ++ G FVR +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317
Query: 652 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711
G S+ + + VG ++D++ E RI+LSLKQ+ + +++E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA-----NEDYIEE 372
Query: 712 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 738
K M S G+ + +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDPDSNEWLEGF 407
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 1230 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1289
+ P +H + + IV G V + G F+ + ++ V +S L++ +VE P++
Sbjct: 281 EDPWRHFARTHAI--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVV 338
Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317
+G +V+ ++ +R+ ++LK ++
Sbjct: 339 AVGDDAMVKVIDIDLERRRISLSLKQAN 366
>sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpsA PE=3 SV=1
Length = 392
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
+E L+ +++G V +T+ G F+ + +D V +S LS +V+SPE +G+ V +
Sbjct: 188 LESLNAGDVIKGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVDSPEDVVSVGQEVDVK 246
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
V SVE ++R+ +++K D+ I H D++ G++ R+ ++G F+ I
Sbjct: 247 VKSVEKDAERISLSIK--DTLPTPFESIK--GQFHEDDVIEGKVVRLANFGAFVEIA-PG 301
Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
+ GL H+SE++ +H+ G++V VKIL +D+E RISL +K++ K D
Sbjct: 302 VQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKED 355
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 93/170 (54%), Gaps = 10/170 (5%)
Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
E L + I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNDEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
+V ++P + RV ++ K + + + L +L+ GD++ G++ R+ ++G F+ I
Sbjct: 157 KVEELDPENNRVILSRKAVEQAENDVKKASLLESLNAGDVIKGKVARLTNFGAFVDIGGV 216
Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ GL HVSELS +HVD+ E + G++V VK+ V+K+ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDT 264
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 119/261 (45%), Gaps = 26/261 (9%)
Query: 279 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 331
++KV V +G GL++D+ P++ +ST S + +R K+E+ E + V
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168
Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
IL + +E + KAS E L G V+KGKV + +FGA V GGV L
Sbjct: 169 -ILSRKAVEQAENDVKKASLLESL-------NAGDVIKGKVARLTNFGAFVDI-GGVDGL 219
Query: 392 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 449
+ +S + P VG E+ +V V+ ++RI+++ K TL +I + E
Sbjct: 220 VHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHED 279
Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
+ G + ++ G FV GVQG SE+ + P GQ V +I+
Sbjct: 280 D---VIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGI 336
Query: 510 IPASRRINLSFMMKPTRVSED 530
+ RI+LS +K T ED
Sbjct: 337 DEENERISLS--IKATLPKED 355
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 150/367 (40%), Gaps = 33/367 (8%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAY 70
Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
V ++ + L K +L SY ++L I +T++ K G V G
Sbjct: 71 VTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDV--G 128
Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
+GF P S + D E S++ GQ ++ ++ P + R+ LS K +E+D+ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQAENDVKK 184
Query: 535 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
G ++ G V +T V + G G + L+ EH + V+
Sbjct: 185 ASLLESLNAGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVDSPEDVVSV 239
Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
G E D ++ ++ ++ + LS K +L + + H + V+ G V + G FV
Sbjct: 240 GQEVDVKVKSVEKDAERISLSIKDTLPTPFESI---KGQFHEDDVIEGKVVRLANFGAFV 296
Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL-----KQSC 700
+ G S+ + GQ V IL ++ E RI+LS+ K+
Sbjct: 297 EIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKEDV 356
Query: 701 CSSTDAS 707
S DA+
Sbjct: 357 VESDDAT 363
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 88/396 (22%), Positives = 162/396 (40%), Gaps = 80/396 (20%)
Query: 93 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 148
+ ++EG +T V+ +ED ++H F G +P + L+ EN VK G ++
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEA 69
Query: 149 VV------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL-- 184
V R ++ + YL D + VT+ +KG + +D+
Sbjct: 70 YVTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDVGQ 129
Query: 185 --LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 242
VP ++ST + + F G ++ P N R
Sbjct: 130 RGFVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------R 167
Query: 243 ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 302
++ + +AV N + + + GD+ + KV R+ G +DI
Sbjct: 168 VIL---SRKAVEQAEND--VKKASLLESLNAGDVI-KGKVARL-TNFGAFVDIGGVD--- 217
Query: 303 PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL--VF 357
V +S+++ E V E G V V++ + E ++ I + FE + F
Sbjct: 218 -GLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQF 276
Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
DV ++GKV+ + +FGA V+ GV+ L + ++ I PG+K + G ++
Sbjct: 277 HEDDV-----IEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNV 331
Query: 418 RVLGV--KSKRITVTHKKTL-----VKSKLAILSSY 446
++LG+ +++RI+++ K TL V+S A SY
Sbjct: 332 KILGIDEENERISLSIKATLPKEDVVESDDATTQSY 367
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 117/290 (40%), Gaps = 55/290 (18%)
Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
+K G V+G V V VVV+ I G G IP L+ H H V+K G E +
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKQGDEIEA 69
Query: 593 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 643
+ +D E+ S Y L S +QL ++ S+ + + ++ V +++ G
Sbjct: 70 YVTKIEVDEEND----SGVYIL--SKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGL 123
Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
V R GF P S D S + GQ++R + +++ E R+ LS K +
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQAE 179
Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
D +K ++L+S G VI+GKV +FG V
Sbjct: 180 NDV----------KKASLLES-------------LNAGDVIKGKVARLTNFGAFVDI--- 213
Query: 764 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
V G + +L+ V+S DV + VD+ +K+V D R
Sbjct: 214 GGVDGLVHVSELSHEHVDSPE-------DVVSVGQEVDVKVKSVEKDAER 256
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
++++ GD V G++++VE + + I G+ +S+LS H++N + + G++++
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEA 69
Query: 1389 KILK--VDKE---------KRRISLGMKSSYFKNDADNLQM 1418
+ K VD+E KR++ Y + DN ++
Sbjct: 70 YVTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEI 110
>sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC
10987) GN=BCE_1625 PE=3 SV=1
Length = 382
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1286
+++ K E I L +V+G V+ +T G F+ + +D V +S +S VE P
Sbjct: 171 VELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQPS 229
Query: 1287 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1346
+ G+ V +VLSV+ ++R+ +++K + N + GDI G +KR+
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NIAGEVKAGDIREGIVKRLV 285
Query: 1347 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
++G F+ I + GL HVS+++ HV N + G++VKVK+L+V ++RISL +K
Sbjct: 286 TFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKE 344
Query: 1407 SYFKNDADNLQMSSEEESDEA 1427
++ +N+ E +D A
Sbjct: 345 AFEENNVTEDYSQYEPNADSA 365
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 1292 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1351
GK +A +++ ++ RV ++ K + +S+L GD+V G ++R+ +G F
Sbjct: 146 GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAF 205
Query: 1352 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ + + GL H+S++S + V+ + G+KVKVK+L VD + +RISL +K++
Sbjct: 206 VNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
S +K G VV+G V + FGA V GGV L + +S + +P + + G ++ +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242
Query: 420 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
L V ++RI+++ K ++ +A D I G + ++ G FV GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENIAGEVKAGD--IREGIVKRLVTFGAFVEILPGVEG 299
Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 530
S++ P+ + +GQ VK +++ A +RI+LS + V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAFEENNVTED 354
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 127/294 (43%), Gaps = 46/294 (15%)
Query: 1058 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1117
FI S E +++F + GK + ++ +++EK R++L + + +D
Sbjct: 127 FIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKN--RVILS--HKAVVELELDSKKK 180
Query: 1118 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1177
+ + EGD+V G + ++ G V +G + G VH +++ + V P ++GQ
Sbjct: 181 EAISSLKEGDVVEGTVQRLTDF--GAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQK 237
Query: 1178 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1237
VK KVL + + T LS PG
Sbjct: 238 -----------VKVKVLSVD--------------------ADTQRISLSIKAAQPGPWEN 266
Query: 1238 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1297
++ I +G VK + + G F+ + ++ V +S +++ +V++P + +G+ V
Sbjct: 267 IAGEVKAGDIREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
Query: 1298 RVLSVEPLSKRVEVTLK-----TSDSRTASQSEIN-NLSNLHVGDIVIGQIKRV 1345
+VL V KR+ +++K + + SQ E N + + + DI+ Q+K++
Sbjct: 327 KVLEVHVAEKRISLSIKEAFEENNVTEDYSQYEPNADSATFQLSDIIGEQLKKL 380
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 142/367 (38%), Gaps = 52/367 (14%)
Query: 454 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 509
+ G +TK+E+ V G P SEL + S + + Q+++ +I+ +
Sbjct: 20 VVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQILELKIIKLEEND 79
Query: 510 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 569
+ S+R + + + + G + V + +VV + +G+ ++ H
Sbjct: 80 LVLSKR---AVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDLGVRGFIPASLVEVH 136
Query: 570 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 628
+ +K ++ LD E + ++LS K + +A S +
Sbjct: 137 YVEDFTDYKGKTLAVK-------IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEG 189
Query: 629 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 688
VV G V + + G FV +G + G S+ + S+ GQ V+ +L V+++
Sbjct: 190 DVVEGTVQRLTDFGAFVN-VGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDAD 248
Query: 689 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 748
T RI+LS+K + E IA E+K G + EG V
Sbjct: 249 TQRISLSIKAAQPGPW------------ENIA---------GEVKA------GDIREGIV 281
Query: 749 HESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVD 801
FG V V G + Q+A V E G ++ +L+V AE+ +
Sbjct: 282 KRLVTFGAFVEI--LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRIS 339
Query: 802 LSLKTVF 808
LS+K F
Sbjct: 340 LSIKEAF 346
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 148/355 (41%), Gaps = 29/355 (8%)
Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
V +++ G VV G V V+ +V + P+ ++ I K ++ L
Sbjct: 9 VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQIL 68
Query: 416 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
+++ ++ + ++ K V ++ A + + T + + I G V GV
Sbjct: 69 ELKIIKLEENDLVLS--KRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124
Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 529
+GF P S + + E + Y G+ + +I+ R+ LS + +
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182
Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 587
+K G +V G V +T V V G G + H++ + H V + V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235
Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 644
+ ++L +D ++ + LS I +AQ P + A + + G V ++ G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGAF 290
Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
V L + G S+ + + ++ +GQ V+ +L+V+ RI+LS+K++
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEA 345
>sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1
Length = 580
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 73/401 (18%)
Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
+SIG+ G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVLGKIVKLL 316
Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
G ++I + G +H +E+ KNI DP ++G V+ VL
Sbjct: 317 PY--GAFIEIEEGIEGLIHISEMSWVKNIV-------------DPSEVVNKGDEVEAIVL 361
Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
I + ++SL G+ T + P ++E E + V +KN
Sbjct: 362 SIQKD-----EGKISL-----GLKQTERN--------PWDNIE--EKYPIGLHVNAEIKN 401
Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
+T+ G F+ L ++ + +S++S V P + F G V +LSV+ SK++ + +
Sbjct: 402 LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGV 461
Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
K S ++ E + G ++ G + ++ ++G F+ ++N + GL HVSELS+
Sbjct: 462 KQLSSNPWNEIE----AMFPAGTVISGVVTKITAFGAFVELQN-GIEGLIHVSELSDKPF 516
Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1414
IE I GE V K++K+D + +++SL +K N D
Sbjct: 517 AKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNAYD 557
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 141/296 (47%), Gaps = 43/296 (14%)
Query: 1124 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGY 1183
EG IV G+I++ + G GL+V IG + P S D + L Y
Sbjct: 132 EEGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY 175
Query: 1184 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243
G+ + K+L+I+ R ++ +S R L+ + ++L IE +S
Sbjct: 176 -VGKVCEFKILKINVERR---NIVVSRRELLEAERISKKAEL-------------IEQIS 218
Query: 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1303
+G VKN+T G F+ L +D + +++++ + P + + + + +LSV+
Sbjct: 219 IGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVD 277
Query: 1304 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
RV + LK + E G V+G+I ++ YG FI IE + GL
Sbjct: 278 KEKGRVALGLKQKEHNPWEDIE----KKYPPGKRVLGKIVKLLPYGAFIEIEE-GIEGLI 332
Query: 1364 HVSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
H+SE+S ++ VD E + + G++V+ +L + K++ +ISLG+K + +N DN++
Sbjct: 333 HISEMSWVKNIVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTE-RNPWDNIE 386
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 422
G+ V ++ + ++GA V+ G++ L + MS + V P + FK G + +L V
Sbjct: 392 GLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVD 451
Query: 423 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
+SK+IT+ K+ I + + T + G +TKI G FV NG++G
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEAMFPAGT---VISGVVTKITAFGAFVELQNGIEGLIHV 508
Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 519
SEL P + + +G+ V +++ P ++++LS
Sbjct: 509 SELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLS 546
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 72/350 (20%), Positives = 140/350 (40%), Gaps = 32/350 (9%)
Query: 369 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 426
KG V + FG + G + L + M+ I P + ++ EL +L V + R
Sbjct: 224 KGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGR 282
Query: 427 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 486
+ + K+ I Y L G I K+ +G F+ G++G SE+
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPGKRVL---GKIVKLLPYGAFIEIEEGIEGLIHISEMSW 339
Query: 487 DPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 541
+PS + + G V+ ++S +I+L +K T + D ++ +G V+
Sbjct: 340 VKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTERNPWDNIEEKYPIGLHVNA 397
Query: 542 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 594
+ +T +V + +G I H+ + +K V P F + +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGNSVEAVIL 448
Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 654
+D ES + L K N ++ + +V+ G V I G FV + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI---EAMFPAGTVISGVVTKITAFGAFVELQNGIEGL 505
Query: 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
S+ D A + +G++V + ++ ++ + +++LS+K+ +
Sbjct: 506 IHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNA 555
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 95/477 (19%), Positives = 192/477 (40%), Gaps = 70/477 (14%)
Query: 358 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 417
+ ++++PG ++KG V+ ++ +V G+K+ +P MSEF + + +GAE+
Sbjct: 45 SDNEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLVLGAEVEV 99
Query: 418 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 475
+ + + ++ ++ +K + + + ++ E I G IT+ K G V G+
Sbjct: 100 YLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GM 155
Query: 476 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED--- 530
+ F P S++ D + +VG+V + +I+ R I +S +++ R+S+
Sbjct: 156 EAFLPGSQI--DNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAEL 213
Query: 531 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
+ + +G GVV +T V ++ G T+ + H + M E
Sbjct: 214 IEQISIGEYRKGVVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264
Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
+Q +L +D E + L K N + + P V G + ++ G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVLGKIVKLLPYGAF 321
Query: 645 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
+ + G S+ + D S+ G V + +L + + G+I+L LKQ+ +
Sbjct: 322 IEIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNP 381
Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 762
D +EEK + IG + ++ ++G V E
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVNAEIKNLTNYGAFVELEPG 414
Query: 763 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
H +I + G+ ++A IL V K + + L +K + + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNE 471
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 127/585 (21%), Positives = 232/585 (39%), Gaps = 91/585 (15%)
Query: 530 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589
D+ ++ G+++ G V + + VVV V K S+G IP D E + V
Sbjct: 46 DNEIQPGAILKGTVVDINKDFVVVDVGLK--SEGVIPMSEFIDSSEGLVLGAEV---EVY 100
Query: 590 FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
DQ ++E ++LS + + +Q +H S+V G + ++ G V
Sbjct: 101 LDQA---EDEEGKVVLSREKA--TRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI-- 153
Query: 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 709
+ F P S+ + + +L YVG+ IL +N E I +S ++
Sbjct: 154 GMEAFLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVERRNIVVSRRE----------- 200
Query: 710 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------EH 763
L E+I+ +EL +E IG +G V DFGV + +
Sbjct: 201 ---LLEAERIS-------KKAEL--IEQISIGEYRKGVVKNITDFGVFLDLDGIDGLLHI 248
Query: 764 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 823
+D+ H VE ++ IL V K + V L LK +E N +K
Sbjct: 249 TDMTWKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIEK 300
Query: 824 KKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQK 879
K + + + IV+++ + E I G +S+ + K P +
Sbjct: 301 KYPPGK--------RVLGKIVKLLPYGAFI----EIEEGIEGLIHISEMSWVKNIVDPSE 348
Query: 880 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 939
G V A V+++ G++ L LK +TE + ++K Y +G V AEI
Sbjct: 349 VVNKGDEVEAIVLSI--QKDEGKISLGLK---QTERNPWDNIEEK--YPIGLHVNAEIKN 401
Query: 940 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 999
+ ++ G G IHI++++ K V + FK G +V A I++ +
Sbjct: 402 LTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNSVEAVILSVDKES----- 454
Query: 1000 FLWELSIKPSMLTVSEIGSKLLFE-ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1058
K L V ++ S E E G ++G V K+ A + + ++ +
Sbjct: 455 -------KKITLGVKQLSSNPWNEIEAMFPAGTVISGVVTKITAFGAFVELQNGIEGLIH 507
Query: 1059 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1103
+ + + +P + + IG+ V+ V+ ++ + K + L ++ +
Sbjct: 508 VSELSDKP--FAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEY 550
>sp|Q49XT0|RS1_STAS1 30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA
PE=3 SV=1
Length = 393
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 22/223 (9%)
Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
EGQ +K KV E+ V LS R +++ + + D E +E L+
Sbjct: 150 EGQVLKLKVEELDPA---NNRVILS-RKAVEALENAEKKD------------ELLESLNE 193
Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
+++G V +T+ G F+ + +D V +S LS +V+SPE IG+ V ++ SV+
Sbjct: 194 GDVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDK 252
Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
S+R+ +++K D+ + I + GD++ G + R+ ++G F+ I+ + GL H
Sbjct: 253 DSERISLSIK--DTLPSPFESIK--GEFNEGDVIEGTVVRLANFGAFVEIK-PGVQGLVH 307
Query: 1365 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+SE+S H+ + G+ V VK+L VD E RISL +K++
Sbjct: 308 ISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKAT 350
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1299
E L N ++ V V G + + ++ V S +S ++E +F G+++ +V
Sbjct: 103 EQLDNNQTIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIEDF-SDFE-GQVLKLKV 158
Query: 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1359
++P + RV ++ K ++ ++ + L +L+ GD++ G++ R+ ++G F+ I +
Sbjct: 159 EELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVD- 217
Query: 1360 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
GL HVSELS +HV + E + GE V VKI VDK+ RISL +K +
Sbjct: 218 -GLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDT 264
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 22/250 (8%)
Query: 279 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 332
++KV V +G GL++D+ P++ +ST SD E +V KL+ + + + RV
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDF-EGQVLKLKVEELDPANNRV- 168
Query: 333 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 392
IL + +E L K E L G V++GKV + +FGA V GGV L
Sbjct: 169 ILSRKAVEALENAEKKDELLESL-------NEGDVIEGKVARLTNFGAFVDI-GGVDGLV 220
Query: 393 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT 450
+ +S + P +G + ++ V S+RI+++ K TL +I + E
Sbjct: 221 HVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGEFNEGD 280
Query: 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 510
+ G + ++ G FV GVQG SE+ PS GQVV +++
Sbjct: 281 ---VIEGTVVRLANFGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVD 337
Query: 511 PASRRINLSF 520
+ RI+LS
Sbjct: 338 VENERISLSI 347
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 156/386 (40%), Gaps = 37/386 (9%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
+D+K G V G+V ++ IV G + P+ +S I P KVG E+
Sbjct: 11 NDIKEGDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAY 70
Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
V V+ T L K +L SY ++L +T++ K G V G
Sbjct: 71 VTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV--G 128
Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 529
+GF P S + D E S + GQV+K ++ PA+ R+ LS K E
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQVLKLKVEELDPANNRVILS--RKAVEALENAEKK 184
Query: 530 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
D+L++ G ++ G V +T V + G G + L+ EH + V+
Sbjct: 185 DELLESLNEGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVKSPEDVVSI 239
Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
G + ++ +D +S + LS K +L + + + + + V+ G V + G FV
Sbjct: 240 GETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGE---FNEGDVIEGTVVRLANFGAFV 296
Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
+ G S+ S+ GQ V +L V+ E RI+LS+K + +
Sbjct: 297 EIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN- 355
Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSE 731
++E QS NGS+
Sbjct: 356 --------VIESDSETTQSYLDNGSD 373
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 16/189 (8%)
Query: 274 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 333
GD+ + KV R+ G +DI V +S+++ E V+ E G V V+I
Sbjct: 194 GDVI-EGKVARL-TNFGAFVDIGGVD----GLVHVSELSHEHVKSPEDVVSIGETVNVKI 247
Query: 334 LGF-RHLEGLATGILKA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 390
+ E ++ I S FE + + G V++G V+ + +FGA V+ GV+
Sbjct: 248 KSVDKDSERISLSIKDTLPSPFESI---KGEFNEGDVIEGTVVRLANFGAFVEIKPGVQG 304
Query: 391 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAE 448
L + +S I P + + G + +VLG V+++RI+++ K TL ++ S +E
Sbjct: 305 LVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN--VIESDSE 362
Query: 449 ATDRLITHG 457
T + +G
Sbjct: 363 TTQSYLDNG 371
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 36/66 (54%)
Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
++++ GD V G+++ +E + + + G+ +S+LS H+DN + G+++
Sbjct: 10 INDIKEGDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDEIGA 69
Query: 1389 KILKVD 1394
+ KV+
Sbjct: 70 YVTKVE 75
>sp|P38016|RS1_CHLMU 30S ribosomal protein S1 OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=rpsA PE=3 SV=2
Length = 570
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 100/411 (24%), Positives = 183/411 (44%), Gaps = 75/411 (18%)
Query: 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1082
++IG+R G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1083 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316
Query: 1138 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVL 1194
G ++I + G +H +E+ KNI DP ++G V+ VL
Sbjct: 317 PY--GAFIEIEEGIEGLIHVSEMSWVKNIV-------------DPNEVVNKGDEVEVVVL 361
Query: 1195 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1254
I + ++SL G+ T + P ++E E + V +KN
Sbjct: 362 SIQKD-----EGKISL-----GLKQTEHN--------PWDNIE--EKYPIGLRVTAEIKN 401
Query: 1255 VTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313
+T+ G F+ L ++ + +S++S V P + F G V +LSV+ SK++ + +
Sbjct: 402 LTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGV 461
Query: 1314 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
K + E + VG + G + ++ ++G F+ ++N + GL HVS+LS+
Sbjct: 462 KQLTPNPWDEIE----AMFPVGSDISGIVTKITAFGAFVELQN-GIEGLIHVSKLSDKPF 516
Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1424
IE I G+KV K++K+D + +++SL +K F + +EEE+
Sbjct: 517 AKIEDILSIGDKVSAKVIKLDPDHKKVSLSIKE--FLAHGGHAGQDAEEET 565
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 43/295 (14%)
Query: 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYD 1184
EG IV G+I++ + G GL+V IG + P S D + L Y
Sbjct: 133 EGSIVKGQITRKVKG--GLIVDIGMEAFL--------------PGSQIDNKKIKNLDDY- 175
Query: 1185 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1244
G+ + K+L+I+ R +V +S R L+ + ++L IE ++
Sbjct: 176 VGKVCEFKILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITI 219
Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1304
+G VKN+T G F+ L +D + +++++ + P + + + + +LSV+
Sbjct: 220 GERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDK 278
Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1364
RV + LK + E G V G+I ++ YG FI IE + GL H
Sbjct: 279 EKGRVALGLKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIH 333
Query: 1365 VSELS--EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1417
VSE+S ++ VD E + + G++V+V +L + K++ +ISLG+K + N DN++
Sbjct: 334 VSEMSWVKNIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTEH-NPWDNIE 386
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 6/198 (3%)
Query: 326 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 385
G V V +L + EG + LK + G+ V ++ + ++GA V+
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412
Query: 386 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 442
G++ L + MS + V P + FK G + +L V +SK+IT+ K+ I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472
Query: 443 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 502
+ + +D G +TKI G FV NG++G S+L P + + +G V
Sbjct: 473 EAMFPVGSD---ISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIGDKV 529
Query: 503 KCRIMSSIPASRRINLSF 520
+++ P ++++LS
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 96/476 (20%), Positives = 190/476 (39%), Gaps = 72/476 (15%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
S+V+PG ++KG V+ + +V G+K+ +P MSEF + + VGAE+ +
Sbjct: 47 SEVQPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLSVGAEVEVYL 101
Query: 420 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
+ + ++ ++ +K + + + ++ E I G IT+ K G V G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GMEA 157
Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED---- 530
F P S++ D + +VG+V + +I+ I RR ++ +++ R+S+
Sbjct: 158 FLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAELI 214
Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 590
+ + +G G+V +T V ++ G T+ + H + M E
Sbjct: 215 EQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VEL 265
Query: 591 DQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
+Q +L +D E + L K N + + P V G + ++ G F+
Sbjct: 266 NQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAFI 322
Query: 646 RFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
+ G S+ + D ++ G V +L + + G+I+L LKQ+ +
Sbjct: 323 EIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPW 382
Query: 705 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE-- 762
D +EEK + IG + ++ ++G V E
Sbjct: 383 DN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPGI 415
Query: 763 ----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
H +I + G+ ++A IL V K + + L +K + + + E
Sbjct: 416 EGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 145/375 (38%), Gaps = 60/375 (16%)
Query: 633 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 692
G V NI + G F+ G + G + + S+ + Q + IL V+ E GR+
Sbjct: 225 GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283
Query: 693 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 752
L LKQ +EH E+ E K + G + GK+ +
Sbjct: 284 ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRVRGKIVKLL 316
Query: 753 DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 806
+G + EE H ++ + V G ++ +L + K E + L LK
Sbjct: 317 PYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQ 376
Query: 807 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 866
E N ++K +G+ T I + V P I +
Sbjct: 377 T------EHNPWDNIEEKY-------PIGLRVTAE-IKNLTNYGAFVELEPGIEGLIHIS 422
Query: 867 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 926
+S P + F G +V A ++++ S ++ L +K ++ + + ++
Sbjct: 423 DMSWIKKVSHPSELFKKGNTVEAVILSVDKESK--KITLGVKQLT-----PNPWDEIEAM 475
Query: 927 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 986
+ VGS + +T+I ++ G G IH+++++D +E++ S IG V+A+
Sbjct: 476 FPVGSDISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILS---IGDKVSAK 532
Query: 987 IIAKSNKPDMKKSFL 1001
+I PD KK L
Sbjct: 533 VIKLD--PDHKKVSL 545
>sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsA PE=3 SV=1
Length = 559
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 183/408 (44%), Gaps = 67/408 (16%)
Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1085
GQ+V G V + + A + + + L I D A++ PSE+ ++G +
Sbjct: 192 GQQVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRIKHPSEI------VNVGDEIDVK 244
Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
VL ++E+ + L L+ + D V I + EG V R++ + G
Sbjct: 245 VLKFDRERNRVSLGLKQLGE---DPWVAI-----KARYPEGTRVMARVTNLTDY--GCFA 294
Query: 1146 QIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201
++ + G VH +E+ KNI S + DE V+ +VL+I R
Sbjct: 295 ELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDE--------------VEVQVLDIDEERR 340
Query: 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1261
+ L ++ S D S+ + + + G +K++T G F
Sbjct: 341 ---RISLGIKQC----KSNPWEDFSSQFNKGDR-------------ISGTIKSITDFGIF 380
Query: 1262 IMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1320
I L +D V LS++S V E + F G + +LSV+P +R+ + +K +
Sbjct: 381 IGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERERISLGIKQLEDDP 440
Query: 1321 ASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1379
S N ++LH G IV G +K V++ G I++ ++ G+ SE+S D V++ +
Sbjct: 441 FS-----NYASLHEKGSIVRGTVKEVDAKGAVISL-GDDIEGILKASEISRDRVEDARNV 494
Query: 1380 YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1427
+ GE+V+ KI+ +D++ R ISL +KS ++ D ++ ++E + A
Sbjct: 495 LKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKELRKQEVESA 542
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 9/169 (5%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
+E L V+G VKN+T G F+ L +D + +++++ ++ P + +G + +
Sbjct: 186 LESLQEGQQVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRIKHPSEIVNVGDEIDVK 244
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
VL + RV + LK + + + G V+ ++ + YG F +E
Sbjct: 245 VLKFDRERNRVSLGLK----QLGEDPWVAIKARYPEGTRVMARVTNLTDYGCFAELEE-G 299
Query: 1359 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ GL HVSE+ + NI + + G++V+V++L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIK 347
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 157/364 (43%), Gaps = 39/364 (10%)
Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
D++PG ++ G V+ +D G V G+K+ +P + +F + KVG E+ +
Sbjct: 17 DMQPGAIITGIVVDID--GDWVTVHAGLKSEGVIP-VEQFYNEQGELTIKVGDEVHVALD 73
Query: 421 GVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
V+ T ++ +++ I+ A A D ++ K++ G F NG++ F
Sbjct: 74 AVEDGFGETKLSREKAKRAESWIVLEAAFAADEVVKGVINGKVK--GGFTVDVNGIRAFL 131
Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLV 533
P S + + P + + + G+ ++ +++ +++ SRR L R + + +
Sbjct: 132 PGSLVDVRPVRDTTHLE--GKELEFKVIKLDQKRNNVVVSRRSVLEAENSAEREALLESL 189
Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD- 591
+ G V G+V +T V + G G + +A ++H + ++ G E D
Sbjct: 190 QEGQQVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRIKHPS---EIVNVGDEIDV 243
Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVR 646
++L D E + + L K QL D + + V V N+ + GCF
Sbjct: 244 KVLKFDRERNRVSLGLK--------QLGEDPWVAIKARYPEGTRVMARVTNLTDYGCFAE 295
Query: 647 FLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
+ G S+ +D ++ SK VG V +LD++ E RI+L +KQ C S+
Sbjct: 296 LEEGVEGLVHVSE-MDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQ-CKSNP 353
Query: 705 DASF 708
F
Sbjct: 354 WEDF 357
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 4/178 (2%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFR 418
S G + G + ++ FG + GG+ L L +S E+ + ++FK G EL
Sbjct: 359 SQFNKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETV 418
Query: 419 VLGVKSKRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
+L V +R ++ K L + +S E I G + +++ G + + ++G
Sbjct: 419 ILSVDPERERISLGIKQLEDDPFSNYASLHEKGS--IVRGTVKEVDAKGAVISLGDDIEG 476
Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 535
SE+ D + ++ G+ V+ +I+S SR I+LS K +D + +L
Sbjct: 477 ILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKEL 534
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 142/368 (38%), Gaps = 61/368 (16%)
Query: 93 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 140
LE++QEG + VK++ D+G + G G L ++A N G IDV
Sbjct: 186 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 243
Query: 141 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 194
K V DR R V L DP ++I P G V R
Sbjct: 244 K--------VLKFDRERNRVSLGLKQLGEDP------------WVAIKARYPEGTRVMAR 283
Query: 195 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 254
V ++ + G G V + + T + +V ++L +D R +
Sbjct: 284 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRIS 343
Query: 255 LTL-----NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS 309
L + NP+ S GD + D G+ + LD + + ++ +
Sbjct: 344 LGIKQCKSNPW----EDFSSQFNKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWN 399
Query: 310 DVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKPGM 366
+V EE VR ++K+G + IL E ++ GI L+ F H + G
Sbjct: 400 EVGEEAVR----RFKKGDELETVILSVDPERERISLGIKQLEDDPFSNYASLH---EKGS 452
Query: 367 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 424
+V+G V VD+ GA++ ++ + +S + K G E+ +++ + KS
Sbjct: 453 IVRGTVKEVDAKGAVISLGDDIEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKS 512
Query: 425 KRITVTHK 432
+ I+++ K
Sbjct: 513 RVISLSVK 520
>sp|Q9ZKF6|RS1_HELPJ 30S ribosomal protein S1 OS=Helicobacter pylori (strain J99) GN=rpsA
PE=3 SV=1
Length = 552
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 151/339 (44%), Gaps = 63/339 (18%)
Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
HIGK + ++ ++KE + + + F + + ++IS + ++
Sbjct: 155 HIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISKELLEA--------------- 199
Query: 1137 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1188
V G+V QI P + G VH++E+ + +G +P Y EG
Sbjct: 200 TEPVLGVVRQITPFGIFVKFKGIDGLVHYSEISH-----------KGPVNPEKYYKEGDE 248
Query: 1189 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1247
V K + R + LS++++ ++ P E+I+D L P
Sbjct: 249 VYVKAIAYDEEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYA 287
Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
++ V N+ G F+ + ++ + +S +S D V P +G+ + +++ ++P +
Sbjct: 288 IKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKN 347
Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
+R+ V+LK +R E S VGDIV G++ + +G F+ + + GL H
Sbjct: 348 RRLRVSLKQLTNRPFDVFE----SKHQVGDIVEGKVATLTDFGAFLNLGGVD--GLLHNH 401
Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ D + Y+ G+ +KVKILK++K+ ++ISL K
Sbjct: 402 DAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 440
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 159/400 (39%), Gaps = 62/400 (15%)
Query: 423 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
K + +V++KK + + K+ A + E + I G I K G V GV+ F R
Sbjct: 86 KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 144
Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 535
S L + H+G+ +K I+ + IN+S F + R E +L++
Sbjct: 145 SHSSL-----KNDANHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISKELLEA 199
Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 593
V GVV +TP + V KG H ++ V + K G E + +
Sbjct: 200 TEPVLGVVRQITPFGIFVKF------KGIDGLVHYSEISHKGPVNPEKYYKEGDEVYVKA 253
Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
+ D E L LS K ++ + +++ + P + V NI G FV + G
Sbjct: 254 IAYDEEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEG 310
Query: 654 FAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 712
F S+ + D + S VGQ + I+D++ + R+ +SLKQ D
Sbjct: 311 FLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFD------- 363
Query: 713 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 772
+ SKH +G ++EGKV DFG ++ V G + +
Sbjct: 364 ---------VFESKHQ-----------VGDIVEGKVATLTDFGAFLNL---GGVDGLLHN 400
Query: 773 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
H + + G VI+ IL + K ++ + LS K
Sbjct: 401 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 440
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 88/203 (43%), Gaps = 7/203 (3%)
Query: 320 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 379
EK YKEG V V+ + + + + +KA+ + +KPG +K V ++ +G
Sbjct: 240 EKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYG 299
Query: 380 AIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 436
V ++ + +S + + P VG E+ +++ + K++R+ V+ K+ L
Sbjct: 300 VFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQ-LT 358
Query: 437 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 496
+ S + D I G + + G F+ GV G + D + Y
Sbjct: 359 NRPFDVFESKHQVGD--IVEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHY 415
Query: 497 HVGQVVKCRIMSSIPASRRINLS 519
+G V+K +I+ ++I+LS
Sbjct: 416 KIGDVIKVKILKINKKDKKISLS 438
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 19/177 (10%)
Query: 1238 KIEDLSPNM---IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
KIE+L N I++G + +KG +I+ S+ ++ LS + IGK
Sbjct: 106 KIEELGENYENAIIEGKIVG-KNKGGYIVESQGVEY-----FLSRSHSSLKNDANHIGKR 159
Query: 1295 VAGRVLSVEPLSKRVEVTLK----TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
+ ++ V+ + + ++ K +D R Q EI+ L + V+G ++++ +G+
Sbjct: 160 IKACIIRVDKENHSINISRKRFFEVNDKR---QLEISK-ELLEATEPVLGVVRQITPFGI 215
Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
F+ + + GL H SE+S N E Y+ G++V VK + D+EKRR+SL +K++
Sbjct: 216 FVKFKGID--GLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIKAT 270
>sp|Q7A5J0|RS1_STAAN 30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315)
GN=rpsA PE=1 SV=1
Length = 391
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIHGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNED 355
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
E L N I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
+V ++P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGV 216
Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ GL HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 535 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIHGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 89/400 (22%), Positives = 166/400 (41%), Gaps = 90/400 (22%)
Query: 96 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 150
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 151 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 184
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 185 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 244
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 245 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
+ +AV N LL + + GD+ KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVI-HGKVARLTQ-FGAFIDIGGVD- 217
Query: 301 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 355
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 416 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 448
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
++++ GD V G++++VE + + I G+ +S+LS H+D+ + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEA 69
Query: 1389 KILKV--DKE---------KRRISLGMKSSYFKNDADNLQM 1418
+ KV D+E +R++ SY + DN ++
Sbjct: 70 YVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEI 110
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
IG+ V + SI+++ + + L ++ T+ +N++ HE D++ G + ++
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIK--------DTLPTPFENIKGQFHENDVIEGVVVRLA 290
Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
+ G V+I P + G VH +E+ + + P G+ + GQ V K+L I
Sbjct: 291 NF--GAFVEIAPGVQGLVHISEIAHKHIGTP------GEV-----LEPGQQVNVKILGID 337
Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
V LS++++L N + +D T +LE E+ +P +
Sbjct: 338 EE---NERVSLSIKATL-----PNEDVVESDPSTTKAYLENEEEDNPTI 378
>sp|Q99U14|RS1_STAAM 30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=rpsA PE=1 SV=1
Length = 391
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIHGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNED 355
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
E L N I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
+V ++P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGV 216
Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ GL HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 535 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIHGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 89/400 (22%), Positives = 166/400 (41%), Gaps = 90/400 (22%)
Query: 96 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 150
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 151 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 184
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 185 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 244
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 245 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
+ +AV N LL + + GD+ KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVI-HGKVARLTQ-FGAFIDIGGVD- 217
Query: 301 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 355
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 416 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 448
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
++++ GD V G++++VE + + I G+ +S+LS H+D+ + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEA 69
Query: 1389 KILKV--DKE---------KRRISLGMKSSYFKNDADNLQM 1418
+ KV D+E +R++ SY + DN ++
Sbjct: 70 YVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEI 110
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
IG+ V + SI+++ + + L ++ T+ +N++ HE D++ G + ++
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIK--------DTLPTPFENIKGQFHENDVIEGVVVRLA 290
Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
+ G V+I P + G VH +E+ + + P G+ + GQ V K+L I
Sbjct: 291 NF--GAFVEIAPGVQGLVHISEIAHKHIGTP------GEV-----LEPGQQVNVKILGID 337
Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
V LS++++L N + +D T +LE E+ +P +
Sbjct: 338 EE---NERVSLSIKATL-----PNEDVVESDPSTTKAYLENEEEDNPTI 378
>sp|Q8NWM8|RS1_STAAW 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2)
GN=rpsA PE=3 SV=1
Length = 391
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNED 355
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
E L N I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
+V ++P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGV 216
Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ GL HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 535 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)
Query: 96 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 150
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 151 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 184
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 185 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 244
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 245 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
+ +AV N LL + + GD+ D KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217
Query: 301 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 355
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 416 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 448
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 112/303 (36%), Gaps = 67/303 (22%)
Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 587
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 588 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 637
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 638 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 698 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 757
DA +K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 758 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 810
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267
Query: 811 RFR 813
F
Sbjct: 268 PFE 270
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
++++ GD V G++++VE + + I G+ +S+LS H+D+ + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEA 69
Query: 1389 KILKV--DKE---------KRRISLGMKSSYFKNDADNLQM 1418
+ KV D+E +R++ SY + DN ++
Sbjct: 70 YVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEI 110
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
IG+ V + SI+++ + + L ++ T+ +N++ HE D++ G + ++
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIK--------DTLPTPFENIKGQFHENDVIEGVVVRLA 290
Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
+ G V+I P + G VH +E+ + + P G+ + GQ V K+L I
Sbjct: 291 NF--GAFVEIAPGVQGLVHISEIAHKHIGTP------GEV-----LEPGQQVNVKILGID 337
Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
V LS++++L N + +D T +LE E+ +P +
Sbjct: 338 EE---NERVSLSIKATL-----PNEDVVESDPSTTKAYLENEEEDNPTI 378
>sp|Q6G987|RS1_STAAS 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476)
GN=rpsA PE=3 SV=1
Length = 391
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNED 355
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
E L N I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
+V ++P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGV 216
Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ GL HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 535 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)
Query: 96 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 150
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 151 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 184
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 185 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 244
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 245 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
+ +AV N LL + + GD+ D KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217
Query: 301 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 355
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 416 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 448
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 112/303 (36%), Gaps = 67/303 (22%)
Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 587
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 588 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 637
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 638 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 698 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 757
DA +K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 758 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 810
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267
Query: 811 RFR 813
F
Sbjct: 268 PFE 270
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
++++ GD V G++++VE + + I G+ +S+LS H+D+ + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEA 69
Query: 1389 KILKV--DKE---------KRRISLGMKSSYFKNDADNLQM 1418
+ KV D+E +R++ SY + DN ++
Sbjct: 70 YVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEI 110
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
IG+ V + SI+++ + + L ++ T+ +N++ HE D++ G + ++
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIK--------DTLPTPFENIKGQFHENDVIEGVVVRLA 290
Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
+ G V+I P + G VH +E+ + + P G+ + GQ V K+L I
Sbjct: 291 NF--GAFVEIAPGVQGLVHISEIAHKHIGTP------GEV-----LEPGQQVNVKILGID 337
Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
V LS++++L N + +D T +LE E+ +P +
Sbjct: 338 EE---NERVSLSIKATL-----PNEDVVESDPSTTKAYLENEEEDNPTI 378
>sp|Q5HFU7|RS1_STAAC 30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL)
GN=rpsA PE=3 SV=1
Length = 391
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNED 355
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
E L N I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
+V ++P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGV 216
Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ GL HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 535 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 90/400 (22%)
Query: 96 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 150
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 151 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 184
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 185 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 244
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 245 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
+ +AV N LL + + GD+ D KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217
Query: 301 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 355
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
F +DV G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDVIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 416 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAE 448
++LG+ +++R++++ K TL V+S + +Y E
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLE 369
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 112/303 (36%), Gaps = 67/303 (22%)
Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 587
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 588 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 637
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 638 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 698 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 757
DA +K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 758 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 810
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267
Query: 811 RFR 813
F
Sbjct: 268 PFE 270
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
++++ GD V G++++VE + + I G+ +S+LS H+D+ + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEA 69
Query: 1389 KILKV--DKE---------KRRISLGMKSSYFKNDADNLQM 1418
+ KV D+E +R++ SY + DN ++
Sbjct: 70 YVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEI 110
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 1078 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1137
IG+ V + SI+++ + + L ++ T+ +N++ HE D++ G + ++
Sbjct: 239 IGQDVKVKIKSIDRDTERISLSIK--------DTLPTPFENIKGQFHENDVIEGVVVRLA 290
Query: 1138 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1197
+ G V+I P + G VH +E+ + + P G+ + GQ V K+L I
Sbjct: 291 NF--GAFVEIAPGVQGLVHISEIAHKHIGTP------GEV-----LEPGQQVNVKILGID 337
Query: 1198 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1246
V LS++++L N + +D T +LE E+ +P +
Sbjct: 338 EE---NERVSLSIKATL-----PNEDVVESDPSTTKAYLENEEEDNPTI 378
>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
Length = 642
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 170/357 (47%), Gaps = 37/357 (10%)
Query: 1069 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT-VDISNDNMQTFIHEGD 1127
+ E + + ++G +VTG ++ +++++ L + + +DG+ K+ +D +++ GD
Sbjct: 299 IAENEGKIYVGASVTGEIIQVSEKEVFLNINYK--RDGVIPKSEIDDDGKDLKELFTVGD 356
Query: 1128 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK---------NICVSDPLSGYDEGQFD 1178
+ +I K+ +V+ + L + E+K N+ V + + G +
Sbjct: 357 KIVAKIIKLKDADNYVVLSV-KELQREQGYKEIKEAFENKTTLNVVVKEDVKGGIIASYK 415
Query: 1179 PLSGYDEGQFVKC-KVLEISRTVRGTFHV---ELSLRSSLDGMSSTNSSDLSTDVDTPGK 1234
+ + V+ V + + +F V E S + + ++ + LS K
Sbjct: 416 GIRIFIPASHVELFHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLS-------K 468
Query: 1235 HLEKIED-----LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1289
EK+E+ L +V+G VK +T G F+ + +D + +S +S G VE P
Sbjct: 469 EKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEI-EGVDGLLHVSEISWGRVEKPADVL 527
Query: 1290 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESY 1348
IG + VLSV+ +K++ +++K +++ NN+ + VG +V+G++ R +
Sbjct: 528 KIGDKIKVYVLSVDKENKKLSLSVKK-----LTENPWNNVEEKYPVGSVVLGKVIRFADF 582
Query: 1349 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
G F+ +E + GL H+SE+S + GE++K KIL+V E+++I L ++
Sbjct: 583 GAFVKLE-PGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSIR 638
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 6/161 (3%)
Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
++ G VV+G+V + FGA V+ GV L + +S + KP K+G ++ VL
Sbjct: 481 LEEGQVVEGEVKRLTDFGAFVEIE-GVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLS 539
Query: 422 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
V ++K+++++ KK + Y + + G + + G FV+ GV G
Sbjct: 540 VDKENKKLSLSVKKLTENPWNNVEEKYPVGS---VVLGKVIRFADFGAFVKLEPGVDGLV 596
Query: 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
SE+ +PS +VG+ +K +I+ ++I LS
Sbjct: 597 HISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSI 637
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 150/363 (41%), Gaps = 48/363 (13%)
Query: 457 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516
G I ++ + F+ G P+SE+ D G + ++ VG + +I+ A +
Sbjct: 314 GEIIQVSEKEVFLNINYKRDGVIPKSEID-DDGKDLKELFTVGDKIVAKIIKLKDADNYV 372
Query: 517 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT---IPTEHLADH 573
LS + + R +K ++VV V +IA KG IP H+
Sbjct: 373 VLS-VKELQREQGYKEIKEAFENKTTLNVVVKEDVKGGIIAS--YKGIRIFIPASHV--E 427
Query: 574 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVV 631
L H +K I ++ + + +++++ +L++ ++ + + + VV
Sbjct: 428 LFHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLSKEKEKVEETVWNKLEEGQVV 487
Query: 632 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
G V + + G FV G + G S+ G+ + +G ++ +L V+ E +
Sbjct: 488 EGEVKRLTDFGAFVEIEG-VDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKK 546
Query: 692 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 751
++LS+K+ L + N E E + +GSV+ GKV
Sbjct: 547 LSLSVKK-----------------------LTENPWNNVE----EKYPVGSVVLGKVIRF 579
Query: 752 NDFGVVVSFEEHSDVYGF-----ITHHQLAGAT--VESGSVIQAAILDVAKAERLVDLSL 804
DFG V E D G I+H ++A + + G I+A IL+V+ E+ + LS+
Sbjct: 580 ADFGAFVKLEPGVD--GLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSI 637
Query: 805 KTV 807
+ V
Sbjct: 638 REV 640
>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis (strain 168)
GN=ypfD PE=1 SV=1
Length = 382
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 95/172 (55%), Gaps = 6/172 (3%)
Query: 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1293
K E ++ L ++ G V+ +T G F+ + +D V +S LS +VE P G+
Sbjct: 177 KKQELLQSLEVGSVLDGKVQRLTDFGAFVDIG-GIDGLVHISQLSHSHVEKPSDVVEEGQ 235
Query: 1294 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353
V +VLSV+ ++R+ +++K D+ ++I + GD++ G ++R+ S+G F+
Sbjct: 236 EVKVKVLSVDRDNERISLSIK--DTLPGPWNQIG--EKVKPGDVLEGTVQRLVSFGAFVE 291
Query: 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
I + GL H+S++S H+ + G+ VKVK+L V++ + RISL M+
Sbjct: 292 I-LPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMR 342
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 1319 RTASQSEINN-----LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
R +SE N L +L VG ++ G+++R+ +G F+ I + GL H+S+LS HV
Sbjct: 167 RAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGID--GLVHISQLSHSHV 224
Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ + G++VKVK+L VD++ RISL +K +
Sbjct: 225 EKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDT 258
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 6/158 (3%)
Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 423
G V+ GKV + FGA V GG+ L + +S + KP + G E+ +VL V
Sbjct: 188 GSVLDGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDR 246
Query: 424 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
++RI+++ K TL + + D L G + ++ G FV GV+G S
Sbjct: 247 DNERISLSIKDTL-PGPWNQIGEKVKPGDVL--EGTVQRLVSFGAFVEILPGVEGLVHIS 303
Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
++ P + GQ VK +++ RI+LS
Sbjct: 304 QISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSM 341
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 146/345 (42%), Gaps = 28/345 (8%)
Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVK--ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
G VVKG V V+ V+ VK + P+ +S + K KV EL +V V
Sbjct: 16 GDVVKGIVTKVEDKHVDVEIIN-VKQSGIIPISELSSLHVEKASDVVKVDDELDLKVTKV 74
Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
+ + ++ + L E + + + + K G V GV+GF P S
Sbjct: 75 EDDALILSKRAVDADRAWEDLEKKFETKE--VFEAEVKDVVKGGLVVDI--GVRGFIPAS 130
Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDD----LVKLG 536
L E + Y G+ + ++ R+ LS +++ + ++ +++G
Sbjct: 131 -LVEAHFVEDFTDYK-GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVG 188
Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGYEFD-QL 593
S++ G V +T V + G G + H++ L H+ V K V++ G E ++
Sbjct: 189 SVLDGKVQRLTDFGAFVDI---GGIDGLV---HIS-QLSHSHVEKPSDVVEEGQEVKVKV 241
Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
L +D ++ + LS K +L Q+ + P V+ G V ++ G FV L + G
Sbjct: 242 LSVDRDNERISLSIKDTLPGPWNQI---GEKVKPGDVLEGTVQRLVSFGAFVEILPGVEG 298
Query: 654 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
S+ + + GQ+V+ +LDVN RI+LS+++
Sbjct: 299 LVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRE 343
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 119/280 (42%), Gaps = 45/280 (16%)
Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQ 592
++G +V G+V V V V +I S G IP L+ H+E A+ V+K E D
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQS-GIIPISELSSLHVEKAS---DVVKVDDELD- 68
Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 652
L V E L+LS + +++ + V V ++++ G V R
Sbjct: 69 LKVTKVEDDALILSKRA--VDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDIGVR-- 124
Query: 653 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 712
GF P S D T Y G+++ +++++ + R+ LS ++ S A+ QE
Sbjct: 125 GFIPASLVEAHFVEDF--TDYKGKTLSLLVVELDRDKNRVILS-HRAVVESEQANKKQE- 180
Query: 713 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 772
+LQS + +GSV++GKV DFG +F + + G +
Sbjct: 181 --------LLQSLE-------------VGSVLDGKVQRLTDFG---AFVDIGGIDGLVHI 216
Query: 773 HQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLK 805
QL+ + VE G ++ +L V + + LS+K
Sbjct: 217 SQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIK 256
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 34/189 (17%)
Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
G ++ G++ ++ G V IG + G VH ++L + V P +EGQ
Sbjct: 188 GSVLDGKVQRLTDF--GAFVDIGG-IDGLVHISQLSHSHVEKPSDVVEEGQE-------- 236
Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
VK KVL + R + LS++ +L PG + E + P
Sbjct: 237 ---VKVKVLSVDRD---NERISLSIKDTL-----------------PGPWNQIGEKVKPG 273
Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
+++G V+ + S G F+ + ++ V +S +S+ ++ +P + G+ V +VL V
Sbjct: 274 DVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNEN 333
Query: 1306 SKRVEVTLK 1314
+R+ ++++
Sbjct: 334 EERISLSMR 342
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 271 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 330
++VG + D KV R+ G +DI V IS ++ V K +EG V+
Sbjct: 185 LEVGSVLD-GKVQRL-TDFGAFVDIGGID----GLVHISQLSHSHVEKPSDVVEEGQEVK 238
Query: 331 VRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 389
V++L R E ++ I K + VKPG V++G V + SFGA V+ GV+
Sbjct: 239 VKVLSVDRDNERISLSI-KDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVE 297
Query: 390 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 433
L + +S I P + + G + +VL V +RI+++ ++
Sbjct: 298 GLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRE 343
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 1334 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1393
VGD+V G + +VE + + I N G+ +SELS HV+ + + +++ +K+ KV
Sbjct: 15 VGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVVKVDDELDLKVTKV 74
Query: 1394 DKE 1396
+ +
Sbjct: 75 EDD 77
>sp|P56008|RS1_HELPY 30S ribosomal protein S1 OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=rpsA PE=3 SV=1
Length = 556
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 151/339 (44%), Gaps = 63/339 (18%)
Query: 1077 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1136
HIGK V ++ ++KE + + + F + + +++S + ++
Sbjct: 159 HIGKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA--------------- 203
Query: 1137 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQF 1188
V G+V QI P + G VH++E+ + +G +P Y EG
Sbjct: 204 TEPVLGVVRQITPFGIFVEAKGIEGLVHYSEISH-----------KGPVNPEKYYKEGDE 252
Query: 1189 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMI 1247
V K + R + LS++++ ++ P E+I+D L P
Sbjct: 253 VYVKAIAYDAEKR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYA 291
Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1306
++ V N+ G F+ + ++ + +S +S D V P +G+ + +++ ++P +
Sbjct: 292 IKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKN 351
Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
+R+ V+LK +R E S VGD++ G++ + +G F+ + + GL H
Sbjct: 352 RRLRVSLKQLTNRPFDVFE----SKHQVGDVLEGKVATLTDFGAFLNLGGVD--GLLHNH 405
Query: 1367 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ D + Y+ G+ +KVKILK++K+ ++ISL K
Sbjct: 406 DAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 444
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 99/400 (24%), Positives = 162/400 (40%), Gaps = 62/400 (15%)
Query: 423 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481
K + +V++KK + + K+ A + E + I G I K G V GV+ F R
Sbjct: 90 KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 148
Query: 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 535
S L + H+G+ VK I+ + IN+S F + R E +L++
Sbjct: 149 SHSSL-----KNDANHIGKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA 203
Query: 536 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 593
V GVV +TP + +V AKG +G + H ++ V + K G E + +
Sbjct: 204 TEPVLGVVRQITPFGI--FVEAKGI-EGLV---HYSEISHKGPVNPEKYYKEGDEVYVKA 257
Query: 594 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 653
+ D E L LS K ++ + +++ + P + V NI G FV + G
Sbjct: 258 IAYDAEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEG 314
Query: 654 FAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 712
F S+ + Y VGQ + I+D++ + R+ +SLKQ D
Sbjct: 315 FLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFD------- 367
Query: 713 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 772
+ SKH +G V+EGKV DFG ++ V G + +
Sbjct: 368 ---------VFESKHQ-----------VGDVLEGKVATLTDFGAFLNL---GGVDGLLHN 404
Query: 773 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 805
H + + G VI+ IL + K ++ + LS K
Sbjct: 405 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 444
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 129/298 (43%), Gaps = 38/298 (12%)
Query: 368 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSK 425
V G V + FG V+ G++ L +S V P K +K G E+ + + + +
Sbjct: 207 VLGVVRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKR 265
Query: 426 RITVTHKKTLVKSKLAILSSYAEATDRLITHGW-----ITKIEKHGCFVRFYNGVQGFAP 480
R++++ K T I + E D+L G+ ++ IE +G FV N ++GF
Sbjct: 266 RLSLSIKAT-------IEDPWEEIQDKL-KPGYAIKVVVSNIEHYGVFVDIGNDIEGFLH 317
Query: 481 RSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLG 536
SE+ D P++ VGQ + +I+ P +RR+ +S +P V E ++G
Sbjct: 318 VSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKH-QVG 376
Query: 537 SLVSGVVDVVTP-----NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 591
++ G V +T N V + + + DH + V+K
Sbjct: 377 DVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKV--------- 427
Query: 592 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649
++L ++ + + LSAK+ + + ++ A +SV+ G V +I + G F+ G
Sbjct: 428 KILKINKKDKKISLSAKHLVTSPTEEF---AQKHKTDSVIQGKVVSIKDFGVFINADG 482
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 19/177 (10%)
Query: 1238 KIEDLSPN---MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1294
KIE+L N I++G + +KG +I+ S+ ++ LS + IGK
Sbjct: 110 KIEELGENYENAIIEGKIVG-KNKGGYIVESQGVEY-----FLSRSHSSLKNDANHIGKR 163
Query: 1295 VAGRVLSVEPLSKRVEVTLK----TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1350
V ++ V+ + + ++ K +D R S+ L + V+G ++++ +G+
Sbjct: 164 VKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK----ELLEATEPVLGVVRQITPFGI 219
Query: 1351 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
F+ E + GL H SE+S N E Y+ G++V VK + D EKRR+SL +K++
Sbjct: 220 FV--EAKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIKAT 274
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 26/249 (10%)
Query: 183 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 242
D L PG + V +I GV + G + + + ++ N + ++++ +
Sbjct: 284 DKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVK 343
Query: 243 ILFVDPTSRAVGLTLNPYLLHNR---APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 299
I+ +DP +R + ++L L NR S +VGD+ + D G L L
Sbjct: 344 IIDIDPKNRRLRVSLKQ--LTNRPFDVFESKHQVGDVLEGKVATLTDFGAFLNLG----- 396
Query: 300 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE---GLATGILKASAFEGLV 356
+ D ++ +K + YK G ++V+IL + L+ L S E
Sbjct: 397 -GVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFA 455
Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAE 414
H K V++GKV+++ FG + G + + + E + P KK K+G E
Sbjct: 456 QKH---KTDSVIQGKVVSIKDFGVFINADG-------IDVLIKNEDLNPLKKDEIKIGQE 505
Query: 415 LVFRVLGVK 423
+ V+ ++
Sbjct: 506 ITCVVVAIE 514
>sp|Q6GGT5|RS1_STAAR 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252)
GN=rpsA PE=3 SV=1
Length = 391
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 93/174 (53%), Gaps = 6/174 (3%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
+ S++ ++R+ +++K T N H D + G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDDIEGVVVRLANFGAFVEIA-PG 301
Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1412
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNED 355
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
E L N I++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNNEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
+V ++P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGV 216
Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ GL HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 28/355 (7%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 535 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 587 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
G + ++ +D ++ + LS K +L + + H N + G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDDIEGVVVRLANFGAFV 296
Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 112/303 (36%), Gaps = 67/303 (22%)
Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 587
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 588 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 637
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 638 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 698 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 757
DA +K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 758 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 810
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267
Query: 811 RFR 813
F
Sbjct: 268 PFE 270
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 167/401 (41%), Gaps = 90/401 (22%)
Query: 96 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-----VKPGLLLQGVV 150
++EG +T V+ +ED ++H F G +P + L+ + ID VK G ++ V
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHH-IDSPSEVVKEGDEVEAYV 71
Query: 151 ------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL---- 184
R ++ + YL D + VT+ +KG + +D+
Sbjct: 72 TKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG 131
Query: 185 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 244
VP ++ST + + F G ++ P N R++
Sbjct: 132 FVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------RVI 169
Query: 245 FVDPTSRAVGLTLNP----YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 300
+ +AV N LL + + GD+ D KV R+ + G +DI
Sbjct: 170 L---SRKAVEQEENDAKKDQLLQS------LNEGDVID-GKVARLTQ-FGAFIDIGGVD- 217
Query: 301 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL-- 355
V +S+++ E V+ E+ G V+V+I R E ++ I + FE +
Sbjct: 218 ---GLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKG 274
Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 415
F +D G+VV+ + +FGA V+ GV+ L + ++ I PG+ + G ++
Sbjct: 275 QFHENDDIEGVVVR-----LANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQV 329
Query: 416 VFRVLGV--KSKRITVTHKKTL-----VKSKLAILSSYAEA 449
++LG+ +++R++++ K TL V+S + +Y E+
Sbjct: 330 NVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLES 370
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
++++ GD V G++++VE + + I G+ +S+LS H+D+ + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEA 69
Query: 1389 KILKV--DKE---------KRRISLGMKSSYFKNDADNLQM 1418
+ KV D+E +R++ SY + DN ++
Sbjct: 70 YVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEI 110
>sp|Q5HP69|RS1_STAEQ 30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=rpsA PE=3 SV=1
Length = 392
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 106/193 (54%), Gaps = 11/193 (5%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
++ L+ ++ G V +T+ G FI + +D V +S LS +V++PE+ +G+ V +
Sbjct: 188 LDSLNEGDVIDGKVARLTNFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSVGEAVKVK 246
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
V SVE S+R+ +++K T N H D++ G + R+ ++G F+ I +
Sbjct: 247 VKSVEKDSERISLSIKD----TLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEIA-PS 301
Query: 1359 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK-----NDA 1413
+ GL H+SE+ H+ + + G++V VKIL +D++ RISL +K++ K +DA
Sbjct: 302 VQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENVIESDA 361
Query: 1414 DNLQMSSEEESDE 1426
Q E+++DE
Sbjct: 362 STTQSYLEDDNDE 374
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 32/372 (8%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 418
+D+K G V G+V V+ +V GG + P+ +S I P + KVG E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70
Query: 419 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 474
V ++ T L K +L SY ++L + +T++ K G V G
Sbjct: 71 VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDV--G 128
Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 534
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184
Query: 535 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 586
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239
Query: 587 G-YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 645
G ++ ++ +S + LS K +L + + H + V+ G V + G FV
Sbjct: 240 GEAVKVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296
Query: 646 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 702
+ G S+ ++ GQ V IL ++ + RI+LS+K +
Sbjct: 297 EIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENV 356
Query: 703 -STDASFMQEHF 713
+DAS Q +
Sbjct: 357 IESDASTTQSYL 368
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 91/170 (53%), Gaps = 10/170 (5%)
Query: 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1297
E L + +++ V V G + + ++ V S +S ++E +F + G+ +
Sbjct: 103 EKLDNDEVIEAEVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRI 156
Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
+V ++P + RV ++ K + + + L +L+ GD++ G++ R+ ++G FI I
Sbjct: 157 KVEELDPENNRVILSRKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGV 216
Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ GL HVSELS +HV E + GE VKVK+ V+K+ RISL +K +
Sbjct: 217 D--GLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDT 264
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 24/251 (9%)
Query: 279 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 331
+++V V +G GL++D+ P++ +ST S + +R K+E+ E + V
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168
Query: 332 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 391
IL + +E L KAS + L G V+ GKV + +FGA + GGV L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219
Query: 392 CPLPHMSEFEIVKPGKKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 449
+ +S + P + VG ++ + + S+RI+++ K TL I + E
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279
Query: 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509
+ G + ++ G FV VQG SE+ P+ + GQ V +I+
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336
Query: 510 IPASRRINLSF 520
+ RI+LS
Sbjct: 337 DEDNERISLSI 347
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 45/237 (18%)
Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 592
+K G V+G V V VVV+ I G G IP L+ H H V+K G E +
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69
Query: 593 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 643
+ D E+ + Y L S +QL ++ S+ + + V+ V +++ G
Sbjct: 70 YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGL 123
Query: 644 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179
Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
DA +K ++L S G VI+GKV +FG +
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGAFIDI 213
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
++++ GD V G++++VE + + I G+ +S+LS H++N + + G++V+
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEA 69
Query: 1389 KILKV--DKE---------KRRISLGMKSSYFKNDADN 1415
+ K+ D+E KR++ Y + DN
Sbjct: 70 YVTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLDN 107
>sp|P50889|RS1_LEULA 30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2
Length = 429
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 6/165 (3%)
Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
LS +V+G V +T G F+ L +D V +S +S V++P G V ++L+
Sbjct: 228 LSVGEVVEGTVARLTDFGAFVDLG-GVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILA 286
Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
++ R+ +++K + ++ + G ++ G +KRV+ +G F+ I + G
Sbjct: 287 LDTEKGRISLSIKATQRGPWDEAA----DQIAAGSVLEGTVKRVKDFGAFVEIL-PGIEG 341
Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
L HVS++S ++N + ++G+KV+VK+L + + RISL MK+
Sbjct: 342 LVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKA 386
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
K + +V+ ++P + R+ ++ K ++ + S L VG++V G + R+ +G F+
Sbjct: 189 KDIKAQVIEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFV 248
Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ + GL HVSE+S D V N + G+KV VKIL +D EK RISL +K++
Sbjct: 249 DLGGVD--GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKAT 301
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 118/266 (44%), Gaps = 29/266 (10%)
Query: 274 GDIYDQSKVVRVDRGLGLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 329
GD D +KV+ RG GL++D+ P S A +SD+ + + + ++ + E
Sbjct: 144 GDTVD-AKVINAVRG-GLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPA 201
Query: 330 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 389
R++ R A + +A VF+ V G VV+G V + FGA V GGV
Sbjct: 202 NARLILSRK----AVAAQELAAQLAEVFSKLSV--GEVVEGTVARLTDFGAFVDL-GGVD 254
Query: 390 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYA 447
L + +S + P G ++ ++L + ++ RI+++ K T +
Sbjct: 255 GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQ-------RGPWD 307
Query: 448 EATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 503
EA D++ + G + +++ G FV G++G S++ PS + G V+
Sbjct: 308 EAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQ 367
Query: 504 CRIMSSIPASRRINLSFMM---KPTR 526
+++ PA RI+LS KP R
Sbjct: 368 VKVLDIKPAEERISLSMKALEEKPER 393
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 149/351 (42%), Gaps = 32/351 (9%)
Query: 362 VKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG----AELV 416
+K G VV G+++A+D+ A+V G + + P S+ + + K+G A ++
Sbjct: 52 IKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDRNINLADELKIGDTIEAVVI 111
Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 476
V K + KK L K S+AE + I + G + NGV+
Sbjct: 112 SNVTSDKEGVAYLLSKKRLDARKAWENLSFAEGD--TVDAKVINAV--RGGLIVDVNGVR 167
Query: 477 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---- 532
GF P S + + + + + +K +++ PA+ R+ LS + L
Sbjct: 168 GFVPASMVAERFVSDLNQFKN--KDIKAQVIEIDPANARLILSRKAVAAQELAAQLAEVF 225
Query: 533 --VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
+ +G +V G V +T V + G G + ++ D +++ V+ G +
Sbjct: 226 SKLSVGEVVEGTVARLTDFGAFVDL---GGVDGLVHVSEISHDRVKNPA---DVLTKGDK 279
Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVR 646
D ++L LD E + LS I + Q+ P D A I SV+ G V + + G FV
Sbjct: 280 VDVKILALDTEKGRISLS-----IKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVE 334
Query: 647 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
L + G S+ + + + S+ G V+ +LD+ RI+LS+K
Sbjct: 335 ILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMK 385
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 135/355 (38%), Gaps = 52/355 (14%)
Query: 467 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 526
V G +G P E D + +G ++ ++S++ + + +++++ R
Sbjct: 71 AVVGLSTGEEGVVPAREYSDDRNINLADELKIGDTIEAVVISNVTSDKE-GVAYLLSKKR 129
Query: 527 VSEDDLVKLGSLVSG-VVDVVTPNAVVVYVIA-----KGYSKGTIPTEHLADHLEHATVM 580
+ + S G VD NAV +I +G+ ++ E L
Sbjct: 130 LDARKAWENLSFAEGDTVDAKVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQ--FK 187
Query: 581 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNII 639
IK Q++ +D ++ L+LS K ++ S + VV G V +
Sbjct: 188 NKDIKA-----QVIEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLT 242
Query: 640 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
+ G FV LG + G S+ + + + G V IL +++E GRI+LS+K +
Sbjct: 243 DFGAFVD-LGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKAT 301
Query: 700 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 759
D + Q GSV+EG V DFG V
Sbjct: 302 QRGPWDEAADQ---------------------------IAAGSVLEGTVKRVKDFGAFV- 333
Query: 760 FEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTV 807
E + G + Q++ +E SG +Q +LD+ AE + LS+K +
Sbjct: 334 -EILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKAL 387
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 94/433 (21%), Positives = 185/433 (42%), Gaps = 67/433 (15%)
Query: 913 TETSSSKRAKKKSSYD---VGSLVQAEITEI-KPLELRLKFGIGFHGRIHITEVNDDKSN 968
+ET++ A +S+ D VG +V E+ I + + G G + E +DD+ N
Sbjct: 35 SETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDR-N 93
Query: 969 VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1028
+ NL KIG T+ A +I SN K+ + LS K L + L F E D
Sbjct: 94 I--NLADELKIGDTIEAVVI--SNVTSDKEGVAYLLSKK--RLDARKAWENLSFAEGDTV 147
Query: 1029 IGQRVT----GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1084
+ + G + V+ + S + A+ F+ S+L +F+ K +
Sbjct: 148 DAKVINAVRGGLIVDVNGVRGFVPAS--MVAERFV-------SDLNQFKN-----KDIKA 193
Query: 1085 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1144
V+ I+ RL+L + ++ + + + + + G++V G ++++ G
Sbjct: 194 QVIEIDPANA--RLILS--RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDF--GAF 247
Query: 1145 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204
V +G + G VH +E+ + V +P D L+ +G V K+L + T +G
Sbjct: 248 VDLG-GVDGLVHVSEISHDRVKNPA--------DVLT---KGDKVDVKILALD-TEKG-- 292
Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
+ LS++++ G E + ++ +++G VK V G F+ +
Sbjct: 293 RISLSIKAT-----------------QRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI 335
Query: 1265 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1324
++ V +S +S+ +E+P + G V +VL ++P +R+ +++K + + +
Sbjct: 336 LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPERED 395
Query: 1325 EINNLSNLHVGDI 1337
N + DI
Sbjct: 396 RRGNDGSASRADI 408
>sp|Q83E09|RS1_COXBU 30S ribosomal protein S1 OS=Coxiella burnetii (strain RSA 493 / Nine
Mile phase I) GN=rpsA PE=1 SV=1
Length = 551
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Query: 1228 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1287
+ +T + ++E+L ++G +KN+T G F+ L +D + +++++ G V+ P
Sbjct: 171 EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLG-GVDGLLHITDMAWGRVKHPSD 229
Query: 1288 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1347
+G V +VL + KRV + +K ++ E V V G++ +
Sbjct: 230 LLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIE----RRYPVNSRVFGKVTNITD 285
Query: 1348 YGLFITIENTNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1405
YG F+ +E + GL H SEL + NI + ++GE+V+V +L++D+E+RRISLG+K
Sbjct: 286 YGCFVKLEE-GVEGLVHTSELDWTN-KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIK 343
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 1280 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1339
GY+E E +F I K+ R V +S+R + +TS R A L L G +
Sbjct: 141 GYLEDKEIDFKIIKMDQRRNNVV--VSRRAVMEAETSAERQA------RLEELQEGQEIK 192
Query: 1340 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1399
G IK + YG F+ + + GL H+++++ V + + G++V VK+LK D++K+R
Sbjct: 193 GVIKNITDYGAFVDLGGVD--GLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKR 250
Query: 1400 ISLGMK 1405
+SLGMK
Sbjct: 251 VSLGMK 256
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 114/485 (23%), Positives = 194/485 (40%), Gaps = 85/485 (17%)
Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
T +D++PG +VK V+ V IV G+K+ +P SEF +P VG E
Sbjct: 13 LTETDLRPGALVKATVVEVRPDRVIVN--AGLKSEGIIP-ASEFRNEEP----HVGDEF- 64
Query: 417 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK---IEK-HGCFVRFY 472
F V+ T L + K +++E ++ G + K IE+ G F
Sbjct: 65 FVVIEASDNGFGETR---LSREKARRAKAWSE-LEKAYKAGEMVKGVIIERVKGGFTVDL 120
Query: 473 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTR 526
N V+ F P S + + P +P Y + + +I+ +++ SRR + R
Sbjct: 121 NSVRAFLPGSLVDVKPVRDPG--YLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAER 178
Query: 527 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 585
+ + ++ G + GV+ +T V + G G + +A ++H + + +V
Sbjct: 179 QARLEELQEGQEIKGVIKNITDYGAFVDL---GGVDGLLHITDMAWGRVKHPSDLLNV-- 233
Query: 586 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNII 639
G E ++L D + + L K QL D +P NS V G V NI
Sbjct: 234 -GDEVHVKVLKFDRDKKRVSLGMK--------QLADDPWAKIERRYPVNSRVFGKVTNIT 284
Query: 640 ETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLK 697
+ GCFV+ + G S+ +D ++ SK G+ V +L+++ E RI+L +K
Sbjct: 285 DYGCFVKLEEGVEGLVHTSE-LDWTNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIK 343
Query: 698 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 757
Q C + F ++H E+ I GKV DFG+
Sbjct: 344 Q-CKRNPWQEFAEKHEKDEK--------------------------ITGKVRSITDFGMF 376
Query: 758 VSFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFI 809
+ E D+ G + ++ + G +QA IL + + L +K +
Sbjct: 377 IGLE--GDIDGLVHLSDISWTESGEEAIRNYKKGDEVQAVILGIDPERERISLGIKQLEG 434
Query: 810 DRFRE 814
D F E
Sbjct: 435 DPFME 439
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/385 (21%), Positives = 159/385 (41%), Gaps = 63/385 (16%)
Query: 1030 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAVTGH 1085
GQ + G + + + A + + + L I D A+ PS+L ++G V
Sbjct: 188 GQEIKGVIKNITDYGAFVDLG-GVDGLLHITDMAWGRVKHPSDL------LNVGDEVHVK 240
Query: 1086 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1145
VL +++KK + L ++ D K N + F G+++ I G V
Sbjct: 241 VLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVF--------GKVTNITDY--GCFV 290
Query: 1146 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG-TF 1204
++ + G VH +EL + P G+ V+ VLEI R +
Sbjct: 291 KLEEGVEGLVHTSELD----------WTNKNIHPSKVVQSGEEVEVMVLEIDEERRRISL 340
Query: 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1264
++ R+ + + D EKI G V+++T G FI L
Sbjct: 341 GIKQCKRNPWQEFAEKHEKD------------EKI---------TGKVRSITDFGMFIGL 379
Query: 1265 SRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321
+D V LS++S + ES E + + G V +L ++P +R+ + +K +
Sbjct: 380 EGDIDGLVHLSDIS--WTESGEEAIRNYKKGDEVQAVILGIDPERERISLGIK----QLE 433
Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1381
+ + + ++ ++K VES + + + ++G +++ + D V ++
Sbjct: 434 GDPFMEFVESYDKDAVIQAKVKEVESKQAVLELAD-QVLGQMRLADYTYDRVKDLTQELN 492
Query: 1382 AGEKVKVKILKVDKEKRRISLGMKS 1406
G++V VKI+ VD++ R I++ K+
Sbjct: 493 VGDEVAVKIVNVDRKNRLINVSHKA 517
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
+E+L +++G VKN+T G F+ L +D + +++L+ V+ P + +G+ V +
Sbjct: 187 LENLQEGSVIKGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVKHPSEVLEVGQEVEAK 245
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1357
VL + +RV + +K + + L+ + G + G++ + YG F+ IE
Sbjct: 246 VLKFDQEKQRVSLGMKQ-----LGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQ- 299
Query: 1358 NLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ GL HVSE+ + + + + + G++V+V IL++D+ +RRISLGMK
Sbjct: 300 GIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMK 348
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1340
+ E E EF + KL R V +S+R + + R A L NL G ++ G
Sbjct: 147 HFEGKEIEFKVIKLDKKRNNVV--VSRRAVLEATLGEERKAL------LENLQEGSVIKG 198
Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
+K + YG F+ + + GL H+++L+ V + + G++V+ K+LK D+EK+R+
Sbjct: 199 IVKNITDYGAFVDLGGID--GLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRV 256
Query: 1401 SLGMK 1405
SLGMK
Sbjct: 257 SLGMK 261
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 9/159 (5%)
Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1307
G V N+T G F+ + + ++ V +S + ++ V P K +G V +L ++ +
Sbjct: 283 GKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVH-PSKVVQLGDEVEVMILEIDEGRR 341
Query: 1308 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1367
R+ + +K + + N+ + GD + G +K + +G+F+ + + GL H+S+
Sbjct: 342 RISLGMKQCQANPWEEFAANH----NKGDKISGAVKSITDFGVFVGLPG-GIDGLVHLSD 396
Query: 1368 LS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
LS + + Y+ GE+V+ +L +D EK RISLG+K
Sbjct: 397 LSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIK 435
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 160/373 (42%), Gaps = 41/373 (10%)
Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
FT ++ PG V+ +V+A+D V G+K+ L ++EF+ + + KVG +
Sbjct: 14 FTLQEMNPGEVITAEVVAIDQ--NFVTVNAGLKSES-LIDVAEFKNAQGEIEVKVGDFVT 70
Query: 417 FRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
+ V++ ++ +K + L E D I G I K G V +
Sbjct: 71 VTIESVENGFGETKLSREKAKRAADWIALEEAMENGD--ILSGIINGKVKGGLTV-MISS 127
Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVS 528
++ F P S + + P + S + G+ ++ +++ +++ SRR L + R +
Sbjct: 128 IRAFLPGSLVDVRPVKDTS--HFEGKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKA 185
Query: 529 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 587
+ ++ GS++ G+V +T V + G G + LA ++H + V++ G
Sbjct: 186 LLENLQEGSVIKGIVKNITDYGAFVDL---GGIDGLLHITDLAWRRVKHPS---EVLEVG 239
Query: 588 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIET 641
E + ++L D E + L K QL D + +P + G V N+ +
Sbjct: 240 QEVEAKVLKFDQEKQRVSLGMK--------QLGEDPWSGLTRRYPQGTRLFGKVSNLTDY 291
Query: 642 GCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQS 699
G FV + G S+ +D ++ SK +G V IL+++ RI+L +KQ
Sbjct: 292 GAFVEIEQGIEGLVHVSE-MDWTNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQ- 349
Query: 700 CCSSTDASFMQEH 712
C ++ F H
Sbjct: 350 CQANPWEEFAANH 362
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 159/408 (38%), Gaps = 54/408 (13%)
Query: 56 GQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 114
G+ + V++LD + + R+ L L K L LE +QEG V+ VK+I D+G
Sbjct: 150 GKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKAL-LENLQEGSVIKGIVKNITDYGA 208
Query: 115 ILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 170
+ G G L +LA ++ ++ G ++ V D+ ++ V L
Sbjct: 209 FVDLG--GIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGM------ 260
Query: 171 KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 230
K + +D G + +V ++ + G + G V + + T +
Sbjct: 261 KQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPS 320
Query: 231 NDYNQHKKVNARILFVDPTSRAVGLTL-----NPY----LLHNRAPPSHVKVGDIYDQSK 281
+V IL +D R + L + NP+ HN+ V I D
Sbjct: 321 KVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITD--- 377
Query: 282 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-----EEEVRKLEKKYKEGSCVRVRILGF 336
G+ + +P V +SD++ EE VRK YK+G V +L
Sbjct: 378 -------FGVFVGLPG---GIDGLVHLSDLSWTESGEEAVRK----YKKGEEVEAVVLAI 423
Query: 337 R-HLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 393
E ++ GI L+ F + + G +VKG V +VD+ GA++ V+ P
Sbjct: 424 DVEKERISLGIKQLEGDPFGNFISVND---KGSLVKGSVKSVDAKGAVIALSDEVEGYLP 480
Query: 394 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA 441
+ + K K G E+ ++ V K ++ K VK+K A
Sbjct: 481 ASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKNRSI---KLSVKAKDA 525
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 6/165 (3%)
Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
L+ +V G V +TS G FI L +D V L+ LS SP+ +G+ + ++L
Sbjct: 191 LAVGDVVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILD 249
Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
+ RV ++LK + E L GD+V G +KR+ +G F+ + + G
Sbjct: 250 LNEEEGRVSLSLKATVPGPWDGVE----QKLAKGDVVEGTVKRLTDFGAFVEV-LPGIDG 304
Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406
L HVS++S ++N + + G++V+VK+L+V+ + R+SL +K+
Sbjct: 305 LVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKA 349
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 153/366 (41%), Gaps = 41/366 (11%)
Query: 352 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 404
FE L+ + S V+ G VV +V+ VD+ A V G GV+ + L ++ + VK
Sbjct: 4 FEDLLNSVSQVETGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADINDFVK 63
Query: 405 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
G+ V LV R V+G + +T K ++++ A + + G T+
Sbjct: 64 VGEVLDV---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118
Query: 464 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 522
K G V F GV+GF P S L D ++ VGQ +I R LS +
Sbjct: 119 KGGLSVEF-EGVRGFIPASML--DTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREV 175
Query: 523 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-- 580
+ G L G DVVT +A+ S G D L H T +
Sbjct: 176 VEAATAAARAEVFGKLAVG--DVVTGK------VARITSFGAFIDLGGVDGLVHLTELSH 227
Query: 581 ------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVV 631
KSV+ G E + ++L L+ E + LS K ++ P D + VV
Sbjct: 228 ERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATVPG-----PWDGVEQKLAKGDVV 282
Query: 632 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 691
G V + + G FV L + G S+ + + + VGQ V+ +L+VN++ R
Sbjct: 283 EGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAER 342
Query: 692 ITLSLK 697
++LS+K
Sbjct: 343 VSLSIK 348
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 96/198 (48%), Gaps = 34/198 (17%)
Query: 1126 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185
GD+V G++++I S G + +G + G VH TEL + E P S
Sbjct: 194 GDVVTGKVARITSF--GAFIDLG-GVDGLVHLTELSH-----------ERNVSPKSVVTV 239
Query: 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1245
G+ ++ K+L+++ V LSL++++ G P +E + L+
Sbjct: 240 GEEIEVKILDLNEE---EGRVSLSLKATVPG---------------PWDGVE--QKLAKG 279
Query: 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
+V+G VK +T G F+ + +D V +S +S +E+P++ +G+ V +VL V
Sbjct: 280 DVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNAD 339
Query: 1306 SKRVEVTLKTSDSRTASQ 1323
++RV +++K + R A +
Sbjct: 340 AERVSLSIKALEERPAQE 357
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 6/169 (3%)
Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
G VV GKV + SFGA + GGV L L +S V P VG E+ ++L +
Sbjct: 194 GDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNE 252
Query: 425 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
+ R++++ K T+ + A+ + G + ++ G FV G+ G S
Sbjct: 253 EEGRVSLSLKATVPGPWDGVEQKLAKGD---VVEGTVKRLTDFGAFVEVLPGIDGLVHVS 309
Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 531
++ P VGQ V+ +++ + R++LS R ++++
Sbjct: 310 QISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERPAQEE 358
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 144/373 (38%), Gaps = 64/373 (17%)
Query: 473 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 532
GV+G EL D + + VG+V+ ++ + +++++ R+
Sbjct: 39 TGVEGVLTLRELTNDRDADINDFVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARK- 97
Query: 533 VKLGSLVSGVVDVVTPNAVVVYVIAKGYS------KGTIPTEHLADHLEHATVMKSVIKP 586
LV +VVT + G S +G IP A L+ V +
Sbjct: 98 -AWDKLVGREEEVVTVKGT--RAVKGGLSVEFEGVRGFIP----ASMLDTRFVRNAERFV 150
Query: 587 GYEFDQLLVLDNESSN-LLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 644
G EFD + N N +LS + + + ++ + VV G V I G F
Sbjct: 151 GQEFDTKIKEVNAKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSFGAF 210
Query: 645 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 704
+ LG + G ++ + VG+ + ILD+N E GR++LSLK +
Sbjct: 211 ID-LGGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATVPGPW 269
Query: 705 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 764
D +E+K+A G V+EG V DFG V E
Sbjct: 270 DG--------VEQKLAK-------------------GDVVEGTVKRLTDFGAFV--EVLP 300
Query: 765 DVYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVFIDRFREAN 816
+ G + Q++ +E+ G +Q +L+V A AER V LS+K A
Sbjct: 301 GIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAER-VSLSIK---------AL 350
Query: 817 SNRQAQKKKRKRE 829
R AQ++ +K E
Sbjct: 351 EERPAQEEGQKEE 363
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
L VGD+V G++ R+ S+G FI + + GL H++ELS + + +++ GE+++V
Sbjct: 188 FGKLAVGDVVTGKVARITSFGAFIDLGGVD--GLVHLTELSHERNVSPKSVVTVGEEIEV 245
Query: 1389 KILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEESDEAIEEVGSYNR--------SSL 1439
KIL +++E+ R+SL +K++ D +++ + + ++ + + L
Sbjct: 246 KILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGL 305
Query: 1440 LENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQ 1482
+ S ++ + ++ E +L + Q V LEVN D E+
Sbjct: 306 VHVSQISHKRIENPKE---ALKVGQ---EVQVKVLEVNADAER 342
>sp|Q895G2|ISPH_CLOTE 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
tetani (strain Massachusetts / E88) GN=ispH PE=3 SV=1
Length = 635
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1301
L + I +G V+ +T G F+ ++ +D + +S +S G VE P +G + +
Sbjct: 473 LEKDTIKEGEVRRLTDFGAFVNIN-GVDGLLHVSEISWGRVEKPSDMLKVGDKIKVYIKD 531
Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361
++ K++ +++K E+ VG+IV+G + R S+G F+ +E + G
Sbjct: 532 IDKDKKKLALSIKDLTKDPWKDVEVK----YPVGNIVLGTVVRFASFGAFVELE-PGVDG 586
Query: 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
L H+S++S VD +E GE+VK KI++VD EKR+I L +K
Sbjct: 587 LIHISQISHKRVDRVEDELSIGEQVKAKIVEVDGEKRKIGLSIK 630
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 1322 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1381
S+ E S+L I G+++R+ +G F+ I + GL HVSE+S V+ + +
Sbjct: 463 SKVEEETWSSLEKDTIKEGEVRRLTDFGAFVNINGVD--GLLHVSEISWGRVEKPSDMLK 520
Query: 1382 AGEKVKV 1388
G+K+KV
Sbjct: 521 VGDKIKV 527
>sp|Q9ZD28|RS1_RICPR 30S ribosomal protein S1 OS=Rickettsia prowazekii (strain Madrid E)
GN=rpsA PE=3 SV=1
Length = 568
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 156/362 (43%), Gaps = 24/362 (6%)
Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
IL+ S E S +K G+V++G V + +GA + G V L L +S + P
Sbjct: 186 ILEESRSEARDEMLSKIKEGIVLEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244
Query: 406 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
+ + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301
Query: 464 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
+G F+ +G++G SE+ L P M +GQ V+ ++ R++LS
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSI-- 359
Query: 523 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 576
+ E+ L+K +G+++ + +T + +V+ G I ++
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415
Query: 577 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 635
++KS K G E + ++L ++ E + L K L N Q++ + +++V V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLLPNPYQKI---SDEYKKSTIVKAVV 471
Query: 636 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
I + G V ++TGF R + D + + + V + + + ++ + TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFKVHEEIDAKVVSIEKSTGRVLLS 531
Query: 696 LK 697
+K
Sbjct: 532 IK 533
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1306
G V N G F+ L L+ V S +S +++S P K IG+ V VL V+
Sbjct: 295 GKVTNFADYGVFLELKDGLEGLVHSSEIS--WLKSNQNPRKMLTIGQEVEFIVLEVDTEK 352
Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
RV +++K + NN +G I+ I+ + +G+F+ + N N+ G+ H
Sbjct: 353 HRVSLSIKQCQENPLIKFAENN----PIGTIIKAPIRNITDFGIFVVLGN-NMDGMIHEG 407
Query: 1367 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
++S ED+ ++ Y+ G++++ K+L ++ EK ++SLG+K
Sbjct: 408 DISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIK 447
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 136/613 (22%), Positives = 250/613 (40%), Gaps = 109/613 (17%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
S +K VVKG+VI + + IV G+K +P + + G +V E ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88
Query: 420 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 533
F P S++ + P +P+S+ ++ Q K + + +I SRR+ L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202
Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 589
K G ++ GVV +T + + G G + HL D + H + + E
Sbjct: 203 KEGIVLEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249
Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 642
F+Q ++ D ++ + L K N P DA + G V N + G
Sbjct: 250 FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304
Query: 643 CFVRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITLSLKQSC 700
F+ L G S + +++ + K +GQ V +L+V++E R++LS+KQ C
Sbjct: 305 VFLELKDGLEGLV-HSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQ-C 362
Query: 701 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 760
QE+ L +K+ E IG++I+ + DFG+ V
Sbjct: 363 ---------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVL 396
Query: 761 EEHSDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
+ D G I ++ + + G I+ +L + + V L +K + + +
Sbjct: 397 GNNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLLPNPY 454
Query: 813 REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 872
++ + + V A+V +K++ LV+ L N G+ + +
Sbjct: 455 QKISDEYKKS---------------TIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELS 497
Query: 873 TQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYD 928
+K QK F + + A V+++ S+ GR+LL +KA I+E + + + ++ +
Sbjct: 498 DEKDEQKPEMFKVHEEIDAKVVSIEKST--GRVLLSIKAHKIAERQKTLKEYGSSDNTTN 555
Query: 929 VGSLVQAEITEIK 941
+G ++ + E K
Sbjct: 556 MGDILANVLEEKK 568
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
+SR+ ++ E+ LS + G ++ G +K + YG FI + + + GL H++++S V++
Sbjct: 189 ESRSEARDEM--LSKIKEGIVLEGVVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHP 244
Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ +KVKV ++K D++ +RISLG+K
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIK 273
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 121/287 (42%), Gaps = 41/287 (14%)
Query: 1029 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1088
+G+++TG V + L + L+ + + ++ S Q ++ IG+ V VL
Sbjct: 289 VGKKMTGKVTNFADYGVFLELKDGLEGLVHSSEISWLKSN-QNPRKMLTIGQEVEFIVLE 347
Query: 1089 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1148
++ EK + L ++ Q+ + + + +N G I+ I I G+ V +G
Sbjct: 348 VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PIGTIIKAPIRNITDF--GIFVVLG 397
Query: 1149 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1208
++ G +H ++ +++ D L Y +G ++CKVL I+ V L
Sbjct: 398 NNMDGMIHEGDI----------SWEDNGTDLLKSYKKGDEIECKVLAINFEKE---QVSL 444
Query: 1209 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
++ L P + + ++ + IV+ V + G ++L+ K+
Sbjct: 445 GIKQLL-----------------PNPYQKISDEYKKSTIVKAVVTEIKDDGLVVLLNNKV 487
Query: 1269 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
+ LSD E + F + + + +V+S+E + RV +++K
Sbjct: 488 TGFIKRVELSDEKDEQKPEMFKVHEEIDAKVVSIEKSTGRVLLSIKA 534
>sp|Q68WL4|RS1_RICTY 30S ribosomal protein S1 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpsA PE=3 SV=1
Length = 568
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 154/362 (42%), Gaps = 24/362 (6%)
Query: 346 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405
IL+ S E S +K GM+++G V + +GA + G V L L +S + P
Sbjct: 186 ILEESRSEARDEMLSKIKEGMILEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244
Query: 406 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 463
+ + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301
Query: 464 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522
+G F+ +G++G SE+ L P M +GQ V+ ++ R++LS
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSI-- 359
Query: 523 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 576
+ E+ L+K +G+++ + +T + +V+ G I ++
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415
Query: 577 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 635
++KS K G E + ++L ++ E + L K N Q++ + ++V V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLSPNPYQKI---SDEYKKGTIVKAVV 471
Query: 636 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695
I + G V ++TGF R + D + + + V + + + ++ + TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFQVDEEIDAKVVSIEKSTGRVLLS 531
Query: 696 LK 697
+K
Sbjct: 532 VK 533
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1306
G V N G F+ L L+ V S +S +++S P K IG+ V VL V+
Sbjct: 295 GKVTNFADYGVFLELKDGLEGLVHSSEIS--WLKSNQNPRKMLTIGQEVEFIVLEVDTEK 352
Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
RV +++K + NN +G I+ I+ + +G+F+ + N N+ G+ H
Sbjct: 353 HRVSLSIKQCQENPLIKFAENN----PIGTIIKAPIRNITDFGIFVVLGN-NMDGMIHEG 407
Query: 1367 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
++S ED+ ++ Y+ G++++ K+L ++ EK ++SLG+K
Sbjct: 408 DISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIK 447
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 136/612 (22%), Positives = 248/612 (40%), Gaps = 107/612 (17%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
S +K VVKG+VI + + IV G+K +P + + G +V E ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88
Query: 420 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 533
F P S++ + P +P+S+ ++ Q K + + +I SRR+ L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202
Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 589
K G ++ GVV +T + + G G + HL D + H + + E
Sbjct: 203 KEGMILEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249
Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 642
F+Q ++ D ++ + L K N P DA + G V N + G
Sbjct: 250 FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304
Query: 643 CFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701
F+ L G S+ + + K +GQ V +L+V++E R++LS+KQ C
Sbjct: 305 VFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQ-C- 362
Query: 702 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 761
QE+ L +K+ E IG++I+ + DFG+ V
Sbjct: 363 --------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVLG 397
Query: 762 EHSDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 813
+ D G I ++ + + G I+ +L + + V L +K + + ++
Sbjct: 398 NNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLSPNPYQ 455
Query: 814 EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 873
+ + + V A+V +K++ LV+ L N G+ + +
Sbjct: 456 KISDEYKK---------------GTIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELSD 498
Query: 874 QKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDV 929
+K QK F + + A V+++ S+ GR+LL +KA I+E + + + ++ ++
Sbjct: 499 EKDEQKPEMFQVDEEIDAKVVSIEKST--GRVLLSVKAHKIAERQKTLKEYGSSDNTTNM 556
Query: 930 GSLVQAEITEIK 941
G ++ + E K
Sbjct: 557 GDILANVLEEKK 568
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
+SR+ ++ E+ LS + G I+ G +K + YG FI + + + GL H++++S V++
Sbjct: 189 ESRSEARDEM--LSKIKEGMILEGVVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHP 244
Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ +KVKV ++K D++ +RISLG+K
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIK 273
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 56/287 (19%), Positives = 120/287 (41%), Gaps = 41/287 (14%)
Query: 1029 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1088
+G+++TG V + L + L+ + + ++ S Q ++ IG+ V VL
Sbjct: 289 VGKKMTGKVTNFADYGVFLELKDGLEGLVHSSEISWLKSN-QNPRKMLTIGQEVEFIVLE 347
Query: 1089 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1148
++ EK + L ++ Q+ + + + +N G I+ I I G+ V +G
Sbjct: 348 VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PIGTIIKAPIRNITDF--GIFVVLG 397
Query: 1149 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1208
++ G +H ++ +++ D L Y +G ++CKVL I+ V L
Sbjct: 398 NNMDGMIHEGDI----------SWEDNGTDLLKSYKKGDEIECKVLAINFEKE---QVSL 444
Query: 1209 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
++ +P + + ++ IV+ V + G ++L+ K+
Sbjct: 445 GIKQL-----------------SPNPYQKISDEYKKGTIVKAVVTEIKDDGLVVLLNNKV 487
Query: 1269 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
+ LSD E + F + + + +V+S+E + RV +++K
Sbjct: 488 TGFIKRVELSDEKDEQKPEMFQVDEEIDAKVVSIEKSTGRVLLSVKA 534
>sp|Q4ULF1|RS1_RICFE 30S ribosomal protein S1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rpsA PE=3 SV=1
Length = 568
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 76/363 (20%), Positives = 153/363 (42%), Gaps = 24/363 (6%)
Query: 345 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 404
IL+ S E S +K GMV++G V + +GA + G V L L +S +
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243
Query: 405 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 462
P + + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKK---MTGKVTNF 300
Query: 463 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
+G F+ +G++G SE+ L P +GQ V+ ++ R++LS
Sbjct: 301 ADYGVFIELRDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSI- 359
Query: 522 MKPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 575
+ E+ L+K +G+++ + +T + +V G I ++ +
Sbjct: 360 ---KQCQENPLIKFAENNPVGTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDK 414
Query: 576 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 634
++KS K G E + ++L ++ E + L K N Q++ + ++V
Sbjct: 415 GTDLLKSY-KKGDEIECKVLAINIEKEQVSLGVKQLSPNPYQEI---SDEYKKGTIVKAL 470
Query: 635 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 694
+ + + G V ++ GF R++ D + + + + + + + ++ + TGRI L
Sbjct: 471 ITEVKDDGLEVLLNNKVAGFIKRTELSDEKDEQKPEMFKIDEEIEAKVVSIEKSTGRILL 530
Query: 695 SLK 697
S+K
Sbjct: 531 SVK 533
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1306
G V N G FI L L+ V S +S +++S P K IG+ V VL V+
Sbjct: 295 GKVTNFADYGVFIELRDGLEGLVHSSEIS--WLKSNQNPRKTLTIGQEVEFVVLEVDTEK 352
Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
RV +++K + NN VG I+ I+ + +G+F+ + N N+ G+ H
Sbjct: 353 HRVSLSIKQCQENPLIKFAENN----PVGTIIKAPIRNITDFGIFVALGN-NMDGMIHEG 407
Query: 1367 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
++S ED ++ Y+ G++++ K+L ++ EK ++SLG+K
Sbjct: 408 DISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGVK 447
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 130/602 (21%), Positives = 245/602 (40%), Gaps = 103/602 (17%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
S +K VVKG+VI + + IV G+K +P + + G +V + ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDMVIVDV--GLKNEGRIPKSEFLALPEVGDVVEV---FIEKI 88
Query: 420 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 533
F P S++ + P +P+S+ ++ Q K + + +I SRR L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLDNIVVSRRAILEESRSEARDEMLSKI 202
Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 589
K G ++ G V +T + + G G + HL D + H + + E
Sbjct: 203 KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249
Query: 590 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 644
F+Q ++ D ++ + L K N + + + + G V N + G F
Sbjct: 250 FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGKKMTGKVTNFADYGVF 306
Query: 645 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
+ L G S+ + + KT +GQ V +L+V++E R++LS+KQ C
Sbjct: 307 IELRDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362
Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
QE+ L +K+ E +G++I+ + DFG+ V+ +
Sbjct: 363 ------QENPL-----------------IKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399
Query: 764 SDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 815
D G I ++ + + G I+ +L + + V L +K + + +
Sbjct: 400 MD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGVKQLSPNPY--- 454
Query: 816 NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 875
+E S + V A++ VK++ L + L N G+ ++ + +K
Sbjct: 455 ------------QEISDEYKKGTIVKALITEVKDDGLEVLL--NNKVAGFIKRTELSDEK 500
Query: 876 FPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGS 931
QK F + + A V+++ S+ GR+LL +KA I+E + + + ++ ++G
Sbjct: 501 DEQKPEMFKIDEEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGD 558
Query: 932 LV 933
++
Sbjct: 559 IL 560
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
+SR+ ++ E+ LS + G ++ G +K + YG FI + + + GL H++++S V++
Sbjct: 189 ESRSEARDEM--LSKIKEGMVLEGTVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHP 244
Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ +KVKV ++K D++ +RISLG+K
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIK 273
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 121/287 (42%), Gaps = 41/287 (14%)
Query: 1029 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1088
+G+++TG V + + + L+ + + ++ S Q ++ IG+ V VL
Sbjct: 289 VGKKMTGKVTNFADYGVFIELRDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347
Query: 1089 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1148
++ EK + L ++ Q+ + + + +N G I+ I I G+ V +G
Sbjct: 348 VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PVGTIIKAPIRNITDF--GIFVALG 397
Query: 1149 PHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1208
++ G +H +S D+G D L Y +G ++CKVL I+ V L
Sbjct: 398 NNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QVSL 444
Query: 1209 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1268
++ +P + E ++ IV+ + V G ++L+ K+
Sbjct: 445 GVKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDDGLEVLLNNKV 487
Query: 1269 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
+ + LSD E + F I + + +V+S+E + R+ +++K
Sbjct: 488 AGFIKRTELSDEKDEQKPEMFKIDEEIEAKVVSIEKSTGRILLSVKA 534
>sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1A PE=3 SV=1
Length = 328
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1388
++ L V +V+G ++ ++ YG FI I + GL H+SE+S DH+D +++ +++KV
Sbjct: 190 MNGLEVAQVVVGSVRGIKPYGAFIDIGGVS--GLLHISEISHDHIDTPHSVFNVNDEIKV 247
Query: 1389 KILKVDKEKRRISLGMK 1405
I+ +D E+ RISL K
Sbjct: 248 MIIDLDAERGRISLSTK 264
>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1
PE=1 SV=1
Length = 411
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 1330 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1389
+ L +G +V G ++ ++ YG FI I N GL HVS++S D V +I T+ + G+ +KV
Sbjct: 256 AQLGIGSVVTGTVQSLKPYGAFIDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVM 313
Query: 1390 ILKVDKEKRRISLGMK 1405
IL D+E+ R+SL K
Sbjct: 314 ILSHDRERGRVSLSTK 329
>sp|Q92HM4|RS1_RICCN 30S ribosomal protein S1 OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=rpsA PE=3 SV=1
Length = 568
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1306
G V N G FI L L+ V S +S +++S P K IG+ V VL V+
Sbjct: 295 GKVTNFADYGVFIELKDGLEGLVHSSEIS--WLKSNQNPRKTLTIGQEVEFVVLEVDTEK 352
Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1366
RV +++K ++ NN VG I+ I+ + +G+F+ + N N+ G+ H
Sbjct: 353 HRVSLSIKQCQENPLTKFAENN----PVGTIIKAPIRNITDFGIFVALGN-NMDGMIHEG 407
Query: 1367 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
++S ED ++ Y+ G++++ K+L ++ EK ++SLG+K
Sbjct: 408 DISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIK 447
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 153/361 (42%), Gaps = 20/361 (5%)
Query: 345 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 404
IL+ S E S +K GMV++G V + +GA + G V L L +S +
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243
Query: 405 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 462
P + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 244 PSEVLDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAIKEEFPVGKQ---MTGKVTNF 300
Query: 463 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521
+G F+ +G++G SE+ L P +GQ V+ ++ R++LS
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIK 360
Query: 522 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 577
P T+ +E++ V G+++ + +T + +V G I ++ +
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGT 416
Query: 578 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 636
++KS K G E + ++L ++ E + L K N Q++ + ++V +
Sbjct: 417 DLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKALIT 472
Query: 637 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
+ + G V ++ GF R++ D + + + + + + + ++ + TGRI LS+
Sbjct: 473 EVKDEGLEVLLNDKVAGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSV 532
Query: 697 K 697
K
Sbjct: 533 K 533
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 131/600 (21%), Positives = 243/600 (40%), Gaps = 99/600 (16%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
S +K VVKG+VI + + IV G+K +P + + G +V + ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDIIIVDV--GLKNEGRIPKSEFLALPEVGDVVEV---FIEKI 88
Query: 420 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 533
F P S++ + P +P+S+ ++ Q K + + +I SRR L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202
Query: 534 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 589
K G ++ G V +T + + G G + HL D + H + + +
Sbjct: 203 KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LD 249
Query: 590 FDQ---LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 644
F+Q ++V+ + N +S ++S P +A + G V N + G F
Sbjct: 250 FNQKVKVMVIKFDEKNKRISLGIKQLDSN---PWEAIKEEFPVGKQMTGKVTNFADYGVF 306
Query: 645 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 703
+ L G S+ + + KT +GQ V +L+V++E R++LS+KQ C
Sbjct: 307 IELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C--- 362
Query: 704 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 763
QE+ L K+ E +G++I+ + DFG+ V+ +
Sbjct: 363 ------QENPL-----------------TKFAENNPVGTIIKAPIRNITDFGIFVALGNN 399
Query: 764 SDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 815
D G I ++ + + G I+ +L + + V L +K + + ++E
Sbjct: 400 MD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI 457
Query: 816 NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 875
+ +K K L I E+ E VL + I +SD ++
Sbjct: 458 SDEY------KKGTIVKAL--------ITEVKDEGLEVLLNDKVAGFIKRTELSDEKDEQ 503
Query: 876 FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGSLV 933
P+ F + + A V+++ S+ GR+LL +KA I+E + + + ++ ++G ++
Sbjct: 504 KPE-MFQIDKEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGDIL 560
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
+SR+ ++ E+ LS + G ++ G +K + YG FI + + + GL H++++S V++
Sbjct: 189 ESRSEARDEM--LSKIKEGMVLEGTVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHP 244
Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ +KVKV ++K D++ +RISLG+K
Sbjct: 245 SEVLDFNQKVKVMVIKFDEKNKRISLGIK 273
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 121/289 (41%), Gaps = 45/289 (15%)
Query: 1029 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1088
+G+++TG V + + + L+ + + ++ S Q ++ IG+ V VL
Sbjct: 289 VGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347
Query: 1089 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQ 1146
++ EK + L ++ Q+ N T E + VG I + + G+ V
Sbjct: 348 VDTEKHRVSLSIKQCQE------------NPLTKFAENNPVGTIIKAPIRNITDFGIFVA 395
Query: 1147 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1206
+G ++ G +H +S D+G D L Y +G ++CKVL I+ V
Sbjct: 396 LGNNMDGMIH---------EGDISWEDKGT-DLLKSYKKGDEIECKVLAINIEKE---QV 442
Query: 1207 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1266
L ++ +P + E ++ IV+ + V +G ++L+
Sbjct: 443 SLGIKQL-----------------SPNPYQEISDEYKKGTIVKALITEVKDEGLEVLLND 485
Query: 1267 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315
K+ + + LSD E + F I K + +V+S+E + R+ +++K
Sbjct: 486 KVAGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSVKA 534
>sp|Q48082|RS1_HAEIN 30S ribosomal protein S1 OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=rpsA PE=3 SV=1
Length = 549
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 15/167 (8%)
Query: 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLS 1301
N + G V N+T GCF+ + ++ V +S + + P K +G V VL
Sbjct: 277 NSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMD--WTNKNIHPSKVVSLGDTVEVMVLE 334
Query: 1302 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLV 1360
++ +R+ + LK + +Q ++ H GD V G+IK + +G+FI +E +
Sbjct: 335 IDEERRRISLGLKQCKANPWTQ-----FADTHNKGDKVTGKIKSITDFGIFIGLEG-GID 388
Query: 1361 GLCHVSELSEDHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMK 1405
GL H+S++S + E + Y+ G++V +L VD K RISLG+K
Sbjct: 389 GLVHLSDISW-SISGEEAVRQYKKGDEVSAVVLAVDAVKERISLGIK 434
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 11/170 (6%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
+E+L V+G VKN+T G F+ L +D + +++++ V+ P + +G V +
Sbjct: 186 LENLVEGSEVKGVVKNLTEYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEVTVK 244
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1357
VL + RV + LK Q ++ H V + G++ + YG F+ I +
Sbjct: 245 VLKFDKDRTRVSLGLKQ-----LGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEILD- 298
Query: 1358 NLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ GL HVSE+ + NI + G+ V+V +L++D+E+RRISLG+K
Sbjct: 299 GVEGLVHVSEMDWTN-KNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLK 347
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 365 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 424
G VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 192 GSEVKGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDK 250
Query: 425 KRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 483
R V+ K L + A ++ +L G +T + +GCFV +GV+G SE
Sbjct: 251 DRTRVSLGLKQLGQDPWAAIAENHPVNSKLT--GKVTNLTDYGCFVEILDGVEGLVHVSE 308
Query: 484 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
+ + PS + +G V+ ++ RRI+L
Sbjct: 309 MDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGL 346
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 1286 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1345
E + +GK + +V+ ++ V V+ + SQ L NL G V G +K +
Sbjct: 143 EADHLLGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNL 202
Query: 1346 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
YG F+ + + GL H+++++ V + I G++V VK+LK DK++ R+SLG+K
Sbjct: 203 TEYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLK 260
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 148/365 (40%), Gaps = 59/365 (16%)
Query: 466 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 519
G F NGV+ F P S + P E + +G+ ++ +++ +++ SRR +
Sbjct: 118 GGFTVELNGVRAFLPGSLVDTRPAREADHL--LGKELEFKVIKLDQKRNNVVVSRRAVIE 175
Query: 520 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 578
R + + GS V GVV +T V + G G + +A ++H +
Sbjct: 176 SENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDL---GGVDGLLHITDMAWKRVKHPS 232
Query: 579 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVC 636
++ G E ++L D + + + L K Q + + HP NS + G V
Sbjct: 233 ---EIVNVGDEVTVKVLKFDKDRTRVSLGLK----QLGQDPWAAIAENHPVNSKLTGKVT 285
Query: 637 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITL 694
N+ + GCFV L + G S+ +D ++ SK +G +V +L+++ E RI+L
Sbjct: 286 NLTDYGCFVEILDGVEGLVHVSE-MDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISL 344
Query: 695 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 754
LKQ C ++ F + HN G + GK+ DF
Sbjct: 345 GLKQ-CKANPWTQF---------------ADTHNK-----------GDKVTGKIKSITDF 377
Query: 755 GVVVSFE-------EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 807
G+ + E SD+ I+ + A + G + A +L V + + L +K +
Sbjct: 378 GIFIGLEGGIDGLVHLSDISWSISGEE-AVRQYKKGDEVSAVVLAVDAVKERISLGIKQL 436
Query: 808 FIDRF 812
D F
Sbjct: 437 EEDPF 441
>sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1
PE=3 SV=2
Length = 263
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 68/113 (60%), Gaps = 9/113 (7%)
Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
K + ++L+VE S + ++ + + AS SNL VG+I+ G I ++ YGLFI
Sbjct: 157 KFIKLKLLNVEEKSNNLILSHRRALISQAS-------SNLIVGNIIEGIINQITPYGLFI 209
Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ NL GL H+SE++ +++ I + ++ G+ +K I+ VDK++ R+SL MK
Sbjct: 210 KV--GNLKGLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMK 260
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 23/155 (14%)
Query: 555 VIAKGYSKGT-----------IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 603
V+ KG++KG +P HL + + IK +LL ++ +S+NL
Sbjct: 119 VMIKGFNKGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKL-----KLLNVEEKSNNL 173
Query: 604 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 663
+LS + +LI+ A +S++ +++ G + I G F++ +G L G S+
Sbjct: 174 ILSHRRALISQA------SSNLIVGNIIEGIINQITPYGLFIK-VGNLKGLVHISEINIK 226
Query: 664 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698
+S + +G ++++ I+ V+ + GR++LS+K
Sbjct: 227 NLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMKH 261
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 917 SSKRA---KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 973
S +RA + S+ VG++++ I +I P L +K G G +HI+E+N +E +
Sbjct: 176 SHRRALISQASSNLIVGNIIEGIINQITPYGLFIKVG-NLKGLVHISEINIKN---LEQI 231
Query: 974 FSNFKIGQTVTARII 988
S FKIG T+ A II
Sbjct: 232 SSQFKIGDTIKAVII 246
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/254 (19%), Positives = 116/254 (45%), Gaps = 20/254 (7%)
Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
D+ G +V G + + + G +V + A P+ +S + + + F +L
Sbjct: 23 DLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNNFTSLNINDTREFFLL 82
Query: 421 --GVKSKRITVTHKKT-LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 477
++SK++ ++ ++ +++ I AE + + + I K G + G+ G
Sbjct: 83 DYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDS---LLNVMIKGFNKGGMIINL-EGISG 138
Query: 478 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGS 537
F P S LG + S ++ + +K ++++ S + LS + +L+ +G+
Sbjct: 139 FVPNSHLG---NFQKSEQFN-NKFIKLKLLNVEEKSNNLILSHRRALISQASSNLI-VGN 193
Query: 538 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV- 595
++ G+++ +TP + + V G KG + H+++ ++++ + S K G +++
Sbjct: 194 IIEGIINQITPYGLFIKV---GNLKGLV---HISEINIKNLEQISSQFKIGDTIKAVIIH 247
Query: 596 LDNESSNLLLSAKY 609
+D + L LS K+
Sbjct: 248 VDKKQGRLSLSMKH 261
>sp|P51345|RR1_PORPU 30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1
PE=3 SV=1
Length = 263
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 9/113 (7%)
Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
K + ++L+VE S + ++ + + AS SNL VG+I+ G I ++ YGLFI
Sbjct: 157 KFIKLKLLNVEEKSNNLILSHRRALIAQAS-------SNLIVGNIIEGVINQITPYGLFI 209
Query: 1353 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ NL GL H+SE++ V+ I + ++ G+ +K I+ VDK++ R+SL MK
Sbjct: 210 --KAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQGRLSLSMK 260
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 563 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 622
G +P HL + ++ + IK +LL ++ +S+NL+LS + +LI A +
Sbjct: 138 GFVPNSHLNNFSKNTSSTNKFIKL-----KLLNVEEKSNNLILSHRRALIAQA------S 186
Query: 623 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 682
S++ +++ G + I G F++ G L G S+ Q + + +G ++++ I
Sbjct: 187 SNLIVGNIIEGVINQITPYGLFIK-AGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVI 245
Query: 683 LDVNSETGRITLSLKQ 698
+ V+ + GR++LS+K
Sbjct: 246 IHVDKKQGRLSLSMKH 261
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 921 AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 980
A+ S+ VG++++ I +I P L +K G G +HI+E+N + VE + S FKIG
Sbjct: 183 AQASSNLIVGNIIEGVINQITPYGLFIKAG-NLKGLVHISEINVKQ---VERIPSQFKIG 238
Query: 981 QTVTARII 988
T+ A II
Sbjct: 239 DTIKAVII 246
>sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rpsA PE=1 SV=1
Length = 565
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 7/172 (4%)
Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
E +++L ++ G VKN+T G F+ L +D + +++++ V P + IG+ V
Sbjct: 193 ELVQNLEEGQVIDGVVKNITDYGAFVDLG-GIDGLLHVTDIAWRRVNHPTEVLTIGQTVK 251
Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
+++ + + R+ + +K E N G++ + YG F+ +E
Sbjct: 252 VKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNAR----FTGRVTNITDYGAFVELE- 306
Query: 1357 TNLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ GL HVSE+S + + I ++V+V++L+VD KRRISLG+K +
Sbjct: 307 PGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQT 358
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 1298 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
++L ++ + V+ +T T ++ + NL G ++ G +K + YG F+ +
Sbjct: 164 QILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGGI 223
Query: 1358 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ GL HV++++ V++ + G+ VKVKI+K++ E RISLGMK
Sbjct: 224 D--GLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMK 269
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/356 (21%), Positives = 147/356 (41%), Gaps = 42/356 (11%)
Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
+++ G V+ G V + +GA V GG+ L + ++ + P + +G + +++
Sbjct: 197 NLEEGQVIDGVVKNITDYGAFVDL-GGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKII 255
Query: 421 GV--KSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNGV 475
+ ++ RI++ K+ L I + Y A T R +T I +G FV G+
Sbjct: 256 KINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGR------VTNITDYGAFVELEPGI 309
Query: 476 QGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDD 531
+G SE+ P + Q V+ +++ RRI+L M P V +
Sbjct: 310 EGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEK 369
Query: 532 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI---------PTEHLADHLEHATVMKS 582
+GS V G +V +++ G G + P E + D+ + ++K+
Sbjct: 370 H-PVGSTVEG--EVKNKTEFGLFLGLDGDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKA 426
Query: 583 VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 642
V+ L +D E + L K L P D + +VV V ++ E+G
Sbjct: 427 VV---------LDVDVEKERISLGVK-QLEGDPFAEPGD---VKKGAVVTCEVLDVKESG 473
Query: 643 CFVRFLGR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
V+ +G F RS+ + S + VG+ V + ++ + + ++ +S+K
Sbjct: 474 IDVQIVGTDFNTFIKRSELARDRNDQRSDRFAVGEKVDARVIQFDKKARKVQVSIK 529
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 132/312 (42%), Gaps = 52/312 (16%)
Query: 1131 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVK 1190
GR++ I G V++ P + G +H +E+ + + P Q V+
Sbjct: 291 GRVTNITDY--GAFVELEPGIEGLIHVSEMS----------WTKKNMHPGKIVSTSQEVE 338
Query: 1191 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1250
+VLE+ R + L L+ ++ P + +E V+G
Sbjct: 339 VQVLEVDSVKR---RISLGLKQTMR---------------NPWEVF--VEKHPVGSTVEG 378
Query: 1251 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE--KEFPIGKLVAGRVLSVEPLSKR 1308
VKN T G F+ L +D V LS+L D + + F G +V VL V+ +R
Sbjct: 379 EVKNKTEFGLFLGLDGDVDGMVHLSDL-DWKLPGEQVIDNFKKGDMVKAVVLDVDVEKER 437
Query: 1309 VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1368
+ + +K + ++ ++ G +V ++ V+ G+ + I T+ SEL
Sbjct: 438 ISLGVKQLEGDPFAEP-----GDVKKGAVVTCEVLDVKESGIDVQIVGTDFNTFIKRSEL 492
Query: 1369 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAI 1428
+ D D + GEKV ++++ DK+ R++ + +K+ L+++ E+ EAI
Sbjct: 493 ARDRNDQRSDRFAVGEKVDARVIQFDKKARKVQVSIKA---------LEVAEEK---EAI 540
Query: 1429 EEVGSYNRSSLL 1440
+ GS + + L
Sbjct: 541 AQYGSSDSGATL 552
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 103/485 (21%), Positives = 188/485 (38%), Gaps = 81/485 (16%)
Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK--KFKVG-- 412
F +++ V+KGKV+A++ A++ + PL E PG+ + KVG
Sbjct: 22 FAGGNLQESSVIKGKVVAIEKDMAVIDVGLKTEGRVPLR-----EFAGPGRDNEIKVGDT 76
Query: 413 AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 472
E+ + ++ K + L + +++ + + G F
Sbjct: 77 VEVFLDRIENALGEAVLSRDKARREESWGKLEKAFQNNEKVFG---VIFNQVKGGFTVDL 133
Query: 473 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVS 528
+G F PRS++ + P + + + + Q + R +I SRR L R
Sbjct: 134 DGAVAFLPRSQVDIRPIRDVAPLMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQE 193
Query: 529 EDDLVKLGSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPTEHLADHLEHATV 579
++ G ++ GVV +T V +V + + PTE L TV
Sbjct: 194 LVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLT---IGQTV 250
Query: 580 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNI 638
+IK +++E+ + L K L + Q + + +P N+ G V NI
Sbjct: 251 KVKIIK----------INHETHRISLGMKQLLDDPWQGIEAK----YPLNARFTGRVTNI 296
Query: 639 IETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697
+ G FV + G S+ + + K Q V +L+V+S RI+L LK
Sbjct: 297 TDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLK 356
Query: 698 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 757
Q+ + + F+++H +GS +EG+V +FG+
Sbjct: 357 QTMRNPWEV-FVEKH--------------------------PVGSTVEGEVKNKTEFGLF 389
Query: 758 VSFEEHSDVYGFI----THHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFI 809
+ + DV G + +L G V + G +++A +LDV + + L +K +
Sbjct: 390 LGLD--GDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERISLGVKQLEG 447
Query: 810 DRFRE 814
D F E
Sbjct: 448 DPFAE 452
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/446 (21%), Positives = 171/446 (38%), Gaps = 83/446 (18%)
Query: 592 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
Q+L +D N+++S + L + A+Q ++ V+ G V NI + G FV LG
Sbjct: 164 QILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVD-LGG 222
Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
+ G + + ++ +GQ+V+ I+ +N ET RI+L +KQ
Sbjct: 223 IDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQ------------ 270
Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 764
L G E K + + + G+V D+G V E H
Sbjct: 271 -----------LLDDPWQGIEAK----YPLNARFTGRVTNITDYGAFVELEPGIEGLIHV 315
Query: 765 DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT-------VFIDRFREANS 817
+ + G V + ++ +L+V +R + L LK VF+++
Sbjct: 316 SEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKHP---- 371
Query: 818 NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 877
V TV V+ E L L L G +SD + K P
Sbjct: 372 ------------------VGSTVEGEVKNKTEFGLFLGLD--GDVDGMVHLSDLD-WKLP 410
Query: 878 QKQ----FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLV 933
+Q F G V A V+ + R+ L +K + + KK G++V
Sbjct: 411 GEQVIDNFKKGDMVKAVVLDVDVEKE--RISLGVKQLEGDPFAEPGDVKK------GAVV 462
Query: 934 QAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 992
E+ ++K + ++ G F+ I +E+ D+++ + F+ +G+ V AR+I
Sbjct: 463 TCEVLDVKESGIDVQIVGTDFNTFIKRSELARDRNDQRSDRFA---VGEKVDARVIQFDK 519
Query: 993 KPDMKKSFLWELSIKPSMLTVSEIGS 1018
K + + L + +++ GS
Sbjct: 520 KARKVQVSIKALEVAEEKEAIAQYGS 545
>sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1
Length = 557
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1306
V+G +K++T G FI L +D V LS++S E +E+ G +A VL V+
Sbjct: 367 VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426
Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
+R+ + +K ++ NN L+ G IV G++ V++ G + + + + G
Sbjct: 427 ERISLGVKQ-----LAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRA 480
Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1423
SE S D V++ + G++V+ K VD++ R ISL +++ ++ D + +++E
Sbjct: 481 SEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQE 538
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 245 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 299
Query: 1359 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1340
++E E EF + KL R V +S+R + + S R L NL G V G
Sbjct: 146 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESENSAERDQL------LENLQEGMEVKG 197
Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 1401 SLGMK 1405
SLG+K
Sbjct: 256 SLGLK 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 93 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 148
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 149 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 202
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 203 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 257
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 258 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 314 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 374 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 430
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 406
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 407 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 460
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 521 MMK 523
K
Sbjct: 520 RAK 522
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 186/473 (39%), Gaps = 69/473 (14%)
Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 421 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 481 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
S + + P +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 647
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 648 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 766 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA
PE=1 SV=1
Length = 557
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1306
V+G +K++T G FI L +D V LS++S E +E+ G +A VL V+
Sbjct: 367 VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426
Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
+R+ + +K ++ NN L+ G IV G++ V++ G + + + + G
Sbjct: 427 ERISLGVKQ-----LAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRA 480
Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1423
SE S D V++ + G++V+ K VD++ R ISL +++ ++ D + +++E
Sbjct: 481 SEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQE 538
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 245 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 299
Query: 1359 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1340
++E E EF + KL R V +S+R + + S R L NL G V G
Sbjct: 146 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESENSAERDQL------LENLQEGMEVKG 197
Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 1401 SLGMK 1405
SLG+K
Sbjct: 256 SLGLK 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 93 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 148
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 149 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 202
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 203 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 257
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 258 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 314 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 374 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 430
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 406
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 407 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 460
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 521 MMK 523
K
Sbjct: 520 RAK 522
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 186/473 (39%), Gaps = 69/473 (14%)
Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 421 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 481 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
S + + P +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 647
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 648 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 766 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=rpsA PE=3 SV=1
Length = 557
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1306
V+G +K++T G FI L +D V LS++S E +E+ G +A VL V+
Sbjct: 367 VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426
Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
+R+ + +K ++ NN L+ G IV G++ V++ G + + + + G
Sbjct: 427 ERISLGVKQ-----LAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRA 480
Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1423
SE S D V++ + G++V+ K VD++ R ISL +++ ++ D + +++E
Sbjct: 481 SEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQE 538
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 245 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 299
Query: 1359 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1340
++E E EF + KL R V +S+R + + S R L NL G V G
Sbjct: 146 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESENSAERDQL------LENLQEGMEVKG 197
Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 1401 SLGMK 1405
SLG+K
Sbjct: 256 SLGLK 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 93 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 148
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 149 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 202
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 203 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 257
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 258 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 314 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 374 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 430
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 406
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 407 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 460
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 521 MMK 523
K
Sbjct: 520 RAK 522
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 186/473 (39%), Gaps = 69/473 (14%)
Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 421 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 481 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
S + + P +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 647
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 648 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 766 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3
SV=1
Length = 557
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1306
V+G +K++T G FI L +D V LS++S E +E+ G +A VL V+
Sbjct: 367 VEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 426
Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
+R+ + +K ++ NN L+ G IV G++ V++ G + + + + G
Sbjct: 427 ERISLGVKQ-----LAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRA 480
Query: 1366 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1423
SE S D V++ + G++V+ K VD++ R ISL +++ ++ D + +++E
Sbjct: 481 SEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQE 538
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 245 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 299
Query: 1359 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1340
++E E EF + KL R V +S+R + + S R L NL G V G
Sbjct: 146 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESENSAERDQL------LENLQEGMEVKG 197
Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 1401 SLGMK 1405
SLG+K
Sbjct: 256 SLGLK 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 93 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 148
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 149 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 202
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 203 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 257
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 258 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 314 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 374 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 430
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 406
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 407 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 460
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 461 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 521 MMK 523
K
Sbjct: 520 RAK 522
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 186/473 (39%), Gaps = 69/473 (14%)
Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 421 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 480
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 481 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 534
S + + P +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 592
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 593 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 647
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 648 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 705
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 706 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 765
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 766 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 812
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P14128|RS1_PROSP 30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3
SV=1
Length = 378
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 15/162 (9%)
Query: 1250 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1306
G V N+T GCF+ + ++ V +S + + P K +G +V VL ++
Sbjct: 177 GRVTNLTDYGCFVEIEEGVEGLVHVSEMD--WTNKNIHPSKVVNVGDVVEVMVLDIDEER 234
Query: 1307 KRVEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
+R+ + LK S Q +E +N GD V G+IK + +G+FI +E + GL H+
Sbjct: 235 RRISLGLKQCKSNPWQQFAETHNK-----GDRVEGKIKSITDFGIFIGLEG-GIDGLVHL 288
Query: 1366 SELSEDHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMK 1405
S++S + V E + Y+ G+++ +L+VD E+ RISLG+K
Sbjct: 289 SDISWN-VAGEEAVREYKKGDEIAAVVLQVDAERERISLGVK 329
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 81 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 139
Query: 1299 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1358
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 140 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 194
Query: 1359 LVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 195 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 242
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1340
++E E EF + KL R V +S+R + ++S R L NL G V G
Sbjct: 41 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESESSAERDQL------LENLQEGMEVKG 92
Query: 1341 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 93 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 150
Query: 1401 SLGMK 1405
SLG+K
Sbjct: 151 SLGLK 155
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Query: 361 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 420
+++ GM VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 83 NLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 141
Query: 421 GVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 478
+R +++ K+ +AI Y E T G +T + +GCFV GV+G
Sbjct: 142 KFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTK---LTGRVTNLTDYGCFVEIEEGVEGL 198
Query: 479 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
SE+ + PS + +VG VV+ ++ RRI+L
Sbjct: 199 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGL 241
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 121/317 (38%), Gaps = 45/317 (14%)
Query: 93 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 148
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 81 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 138
Query: 149 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 202
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 139 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 186
Query: 203 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 257
+ G V + + T + N V +L +D R + L L
Sbjct: 187 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 246
Query: 258 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313
NP+ HN+ K+ I D + ++ G+ L+ + +VA
Sbjct: 247 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVHLSDIS---------WNVAG 297
Query: 314 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 373
EE + KK E + V +++ R L L F + + K G +V GKV
Sbjct: 298 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL---AATKKGAIVTGKVT 354
Query: 374 AVDSFGAIVQFPGGVKA 390
AVD+ GA V+ GV+
Sbjct: 355 AVDAKGATVELTLGVEG 371
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 17/143 (11%)
Query: 348 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 406
K++ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 245 KSNPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLEGGIDGLV---HLSDISWNVAGE 298
Query: 407 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 460
+++K G E+ VL V ++R + +L +LA ++Y AT + I G +T
Sbjct: 299 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNYLAATKKGAIVTGKVT 354
Query: 461 KIEKHGCFVRFYNGVQGFAPRSE 483
++ G V GV+G+ SE
Sbjct: 355 AVDAKGATVELTLGVEGYLRASE 377
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1306
V+G +K++T G FI L +D V LS++S E +E+ G +A VL V+
Sbjct: 262 VEGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAER 321
Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1354
+R+ + +K + A N L+ G IV G++ V++ G + +
Sbjct: 322 ERISLGVK----QLAEDPFNNYLAATKKGAIVTGKVTAVDAKGATVEL 365
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 36/188 (19%)
Query: 633 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETG 690
G V N+ + GCFV + G S+ +D ++ SK VG V +LD++ E
Sbjct: 177 GRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 235
Query: 691 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 750
RI+L LKQ C S+ F + H G +EGK+
Sbjct: 236 RISLGLKQ-CKSNPWQQFAETHNK--------------------------GDRVEGKIKS 268
Query: 751 SNDFGVVVSFEEHSD--VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSL 804
DFG+ + E D V+ +AG + G I A +L V + L +
Sbjct: 269 ITDFGIFIGLEGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGV 328
Query: 805 KTVFIDRF 812
K + D F
Sbjct: 329 KQLAEDPF 336
>sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rpsA PE=3 SV=2
Length = 566
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 11/170 (6%)
Query: 1239 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1298
+E L +IV G VKN+T G F+ L +D + +++++ V+ P + IG V +
Sbjct: 186 LETLQEGLIVSGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNIGDEVKIK 244
Query: 1299 VLSVEPLSKRVEVTLKT-SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1357
+L + RV + LK SD SE + G++ + YG F+ IE
Sbjct: 245 ILKFDREKIRVSLGLKQLSDDPWTKISE-----RYPEKTKITGRVTNLTDYGCFVEIEE- 298
Query: 1358 NLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ GL HVSE+ + NI + + VKV IL +D+E+RRISLG+K
Sbjct: 299 GVEGLVHVSEMDWTN-KNIHPSKMVQVNSVVKVMILDIDEERRRISLGLK 347
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 362 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 421
++ G++V G V + +GA V GGV L + M+ + P + +G E+ ++L
Sbjct: 189 LQEGLIVSGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILK 247
Query: 422 VKSKRITVTHK-KTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 479
++I V+ K L +S Y E T IT G +T + +GCFV GV+G
Sbjct: 248 FDREKIRVSLGLKQLSDDPWTKISERYPEKTK--IT-GRVTNLTDYGCFVEIEEGVEGLV 304
Query: 480 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 520
SE+ + PS M V VVK I+ RRI+L
Sbjct: 305 HVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGL 346
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 88/162 (54%), Gaps = 11/162 (6%)
Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPL 1305
+ G V N+T GCF+ + ++ V +S + ++ + P K + +V +L ++
Sbjct: 280 ITGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKMVQVNSVVKVMILDIDEE 338
Query: 1306 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1365
+R+ + LK + + + G V+G+IK + +G+FI +E + + GL H+
Sbjct: 339 RRRISLGLKQCKNNPWMEFS----KKYNKGSHVVGKIKSITDFGIFIGLEGS-IDGLVHL 393
Query: 1366 SELSEDHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMK 1405
S++S + + E++ Y+ GE+V +L+VD ++ RISLG+K
Sbjct: 394 SDISWN-ISGEESVKKYKKGEEVLAVVLQVDPDRERISLGIK 434
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 1319 RTASQSEINN-----LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1373
R +SE N L L G IV G +K + YG F+ + + GL H+++++ V
Sbjct: 171 RAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRV 228
Query: 1374 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ I G++VK+KILK D+EK R+SLG+K
Sbjct: 229 KHPSEIVNIGDEVKIKILKFDREKIRVSLGLK 260
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 113/531 (21%), Positives = 213/531 (40%), Gaps = 87/531 (16%)
Query: 363 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422
+PG +++G V+A+ +V +K+ +P + +F+ + + KVG ++ + +
Sbjct: 19 RPGSIIQGTVVAITKDTILVD--AKLKSESKIP-IDQFKNSQGELEVKVGDQIDVALDAI 75
Query: 423 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482
+ + K A L+ D G I K G V + ++ F P S
Sbjct: 76 EDGFGETLLSREKAKRHEAWLTLEQAYKDSKTVVGLINGKVKGGFTVELED-IRAFLPGS 134
Query: 483 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 536
+ + P E +M+ G+ ++ +++ +++ SRR + R + ++ G
Sbjct: 135 LVDIRPVRE--TMHLEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEG 192
Query: 537 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 594
+VSG+V +T V + G G + +A ++H + ++ G E ++L
Sbjct: 193 LIVSGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNIGDEVKIKIL 246
Query: 595 VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIETGCFVRFLG 649
D E + L K QL D S +P + G V N+ + GCFV
Sbjct: 247 KFDREKIRVSLGLK--------QLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIEE 298
Query: 650 RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 707
+ G S+ +D ++ SK V V+ ILD++ E RI+L LKQ C ++
Sbjct: 299 GVEGLVHVSE-MDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQ-CKNNPWME 356
Query: 708 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------ 761
F S K+N GS + GK+ DFG+ + E
Sbjct: 357 F---------------SKKYNK-----------GSHVVGKIKSITDFGIFIGLEGSIDGL 390
Query: 762 -EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 820
SD+ I+ + + + G + A +L V + L +K + D F + S+ +
Sbjct: 391 VHLSDISWNISGEE-SVKKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPFAKYVSSHK 449
Query: 821 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY-NHSIGYASVSD 870
V+ ++ + N +V+SL E+ + I + ++SD
Sbjct: 450 K---------------GSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISD 485
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLS 1306
V G +K++T G FI L +D V LS++S E K++ G+ V VL V+P
Sbjct: 367 VVGKIKSITDFGIFIGLEGSIDGLVHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDR 426
Query: 1307 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN--TNLVGLCH 1364
+R+ + +K ++ +S+ G +V G IK++++ + +++ L+ +
Sbjct: 427 ERISLGIKQLQEDPFAKY----VSSHKKGSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLN 482
Query: 1365 VS-ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404
+S E+ H + + GE V+VK+ +DK++R I L +
Sbjct: 483 ISDEIMNVHDNKPWNKAKIGEIVEVKLNSIDKKERIIYLSI 523
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 159/392 (40%), Gaps = 80/392 (20%)
Query: 89 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSGI 138
+ L LET+QEG++++ VK++ D+G + G G L ++A N G
Sbjct: 182 RNLLLETLQEGLIVSGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNIGD 239
Query: 139 DVKPGLLLQGVVRSIDRTRKVV-----YLSSDPDT-VSKCVTKDLKGISIDLLVPGMMVS 192
+VK +L DR + V LS DP T +S+ + K ++
Sbjct: 240 EVKIKIL------KFDREKIRVSLGLKQLSDDPWTKISERYPEKTK------------IT 281
Query: 193 TRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA 252
RV ++ + G + G V + + T + + V IL +D R
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRR 341
Query: 253 VGLTL-----NPYLLHNRA--PPSHV--KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 303
+ L L NP++ ++ SHV K+ I D G+ + + S
Sbjct: 342 ISLGLKQCKNNPWMEFSKKYNKGSHVVGKIKSITD----------FGIFIGLEG---SID 388
Query: 304 AYVTISDVA-----EEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGL 355
V +SD++ EE V KKYK+G V +L E ++ GI L+ F
Sbjct: 389 GLVHLSDISWNISGEESV----KKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPFAKY 444
Query: 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV-----KPGKKFK 410
V +H K G +V G + +D+ +V + L ++S+ EI+ KP K K
Sbjct: 445 VSSH---KKGSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISD-EIMNVHDNKPWNKAK 500
Query: 411 VGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 442
+G E+V L K+ + + L K +L I
Sbjct: 501 IG-EIVEVKLNSIDKKERIIYLSILEKQELKI 531
>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
GN=rpsA PE=3 SV=1
Length = 572
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 12/174 (6%)
Query: 1237 EKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIG 1292
EKI++ P + G V N G FI L L+ V S +S +++S P K IG
Sbjct: 284 EKIKEEFPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSEIS--WLKSNQNPRKTLTIG 341
Query: 1293 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1352
+ V VL V+ RV +++K + N VG ++ I+ + +G+F+
Sbjct: 342 QEVEFMVLEVDTEKHRVSLSIKQCQQNPLIKFAETN----PVGTVIKAPIRNITDFGIFV 397
Query: 1353 TIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ + NL G+ H +++ ED+ + + Y+ G++V+ K+L ++ EK +ISLG+K
Sbjct: 398 ALSD-NLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQISLGIK 450
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 135/608 (22%), Positives = 247/608 (40%), Gaps = 112/608 (18%)
Query: 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 419
S +KPG VVKG+V+ ++ + G+K +P SEF ++ P K +LV
Sbjct: 34 SHIKPGTVVKGQVVDINEVVVVDV---GLKNEGRIPK-SEF-LLSPAHKLPEIGDLV--- 85
Query: 420 LGVKSKRITVTHKKTLVKSK---------LAILSSYAEATDRLITHGWITKIEKHGCFVR 470
V ++ KTL + K L ++ S E D I G + G F
Sbjct: 86 -DVYIEKTEGHSGKTLSREKAIKEELWGQLELICSKGEFVDGTI-FGRV-----KGGFTV 138
Query: 471 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTR 526
+GV F P S++ + P +PSS+ ++ Q K + + +I SRR L R
Sbjct: 139 DLSGVVAFLPGSQVDVRPIKDPSSIMNIRQPFKILSMDKKLGNIVVSRRAILEESRSEAR 198
Query: 527 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKS 582
+K G ++ G V +T + + G G + HL D + H + +
Sbjct: 199 DEMLSKIKEGMILEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWARVNHPSEV-- 250
Query: 583 VIKPGYEFDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 637
EF+Q ++ + E+ + L K N +++ + + G V N
Sbjct: 251 -----LEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKIKEE---FPVGKKMTGKVTN 302
Query: 638 IIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696
+ G F+ L G S+ + + KT +GQ V +L+V++E R++LS+
Sbjct: 303 FADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSI 362
Query: 697 KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 756
KQ C Q++ L+ K+ E +G+VI+ + DFG+
Sbjct: 363 KQ--C--------QQNPLI-----------------KFAETNPVGTVIKAPIRNITDFGI 395
Query: 757 VVSFEEHSDVY---GFITHHQLAG---ATVESGSVIQAAILDVAKAERLVDLSLKTVFID 810
V+ ++ D G IT T + G ++ +L + + + L +K + +
Sbjct: 396 FVALSDNLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQISLGIKQLTPN 455
Query: 811 RFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 869
++ A+ ++ K A KD G+ VN + + G+ S
Sbjct: 456 PYQGIADEYKKGTVVKAVVTAIKDDGLEVLVN------------------DKAAGFIKKS 497
Query: 870 DYNTQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKS 925
D + +K QK F Q + A V ++ S+ ++LL +KA I+E + + + +
Sbjct: 498 DLSDEKEEQKPEMFAVDQEIEAKVASIEKSTN--KILLSIKAYKIAERQKALKEYGSSDN 555
Query: 926 SYDVGSLV 933
+ ++G ++
Sbjct: 556 TTNMGDIL 563
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
+SR+ ++ E+ LS + G I+ G +K + YG FI + + + GL H++++S V++
Sbjct: 192 ESRSEARDEM--LSKIKEGMILEGTVKNITDYGAFIDLGSVD--GLLHLTDISWARVNHP 247
Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
+ +KVKV ++K ++E +RISLGMK
Sbjct: 248 SEVLEFNQKVKVMVIKFNEETKRISLGMK 276
>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1
Length = 691
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 129/300 (43%), Gaps = 56/300 (18%)
Query: 1522 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1581
++ A+ L +K+ R+ FER + N +WI+Y+ L ++ AR++ +RA+
Sbjct: 76 LQYAQWELEQKEYARSRSVFERALNLHANKVTLWIRYVEAELKSRNINFARNLLDRAVTH 135
Query: 1582 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1641
+ + +W Y +E GN P V +VF+R +++ + A + L +R +
Sbjct: 136 LPRVD-----KLWYKYVWVEEMLGNIP--GVRQVFERWMEWQPDEAAWSAFIKLEQRYGE 188
Query: 1642 NKLADELLYKMI------------KKFKHSC-------KVWLRRVQRLLKQQQEGVQ--- 1679
A E+ + KF+ +V+ R ++ L K E V+
Sbjct: 189 YDRAREIFTRFTMVHPEPRNWIKWSKFEEEYGTSDRVREVFERAIEELSKYGDEFVEERL 248
Query: 1680 ------------------AVVQRALLSLPRHK----HIKFISQTAILEFKNGVAD----R 1713
A+ + L +LPR K H ++ + + GV D +
Sbjct: 249 FIAYARYEAKLHDLDRARAIYKFGLENLPRSKAMLLHKEYTTFEKQYGDREGVEDVVLSK 308
Query: 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773
R +E ++ E PK D+W Y E GD+D R ++E+AI+ +PP + K +++Y+
Sbjct: 309 RRRHYEDLVRENPKNYDVWFDYARLEEASGDIDRTREVYEKAIA-QVPPTQAKRHWRRYI 367
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759
Q A E + R RS+FE L+ + + LW Y++ E++ +++ R L +RA++
Sbjct: 77 QYAQWELEQKEYARSRSVFERALNLHANKVTLWIRYVEAELKSRNINFARNLLDRAVT-H 135
Query: 1760 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795
LP ++ L+ KY+ E+ +G + V ++ ME+
Sbjct: 136 LP--RVDKLWYKYVWVEEMLGNIPGVRQVFERWMEW 169
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 98/241 (40%), Gaps = 28/241 (11%)
Query: 1541 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ----TINIREENEKLNIWVA 1596
+E LVR +P + VW Y + D+++ R + E+A+ T R + +W+
Sbjct: 313 YEDLVRENPKNYDVWFDYARLEEASGDIDRTREVYEKAIAQVPPTQAKRHWRRYIYLWI- 371
Query: 1597 YFNL--ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE---RTEQNKLADELLYK 1651
+F L E E NP E +V+ L+ + A + +++ Q LA K
Sbjct: 372 FFALWEETEAKNP--ERARQVYDTCLKLIPHRTFTFAKVWMHKAHFEIRQGDLA--AARK 427
Query: 1652 MIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKF-----ISQTAILEF 1706
+ + C RL K E Q + + + KHI + + E
Sbjct: 428 TLGRAIGMCPK-----DRLFKGYIEMEQKLYEFGRCRILYEKHIAYNPANCSTWVKWAEL 482
Query: 1707 KNGVAD--RGRSMFE-GILSEYPKRTDL-WSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1762
+ G+ D R R++ + GI ++ W Y+D E G+ D R L+ER + + P
Sbjct: 483 ERGLDDLDRARAILDMGIAQPVLDMPEVVWKSYIDFEEEEGEYDKTRSLYERLLDKADHP 542
Query: 1763 K 1763
K
Sbjct: 543 K 543
>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021) GN=rpsA
PE=3 SV=2
Length = 568
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1376
+SR +SEI + NL G +V G +K + YG F+ + + GL HV++++ V++
Sbjct: 182 ESRAEQRSEI--VQNLEEGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHP 237
Query: 1377 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
I G++VKV+I+++++E RISLGMK
Sbjct: 238 SEILNIGQQVKVQIIRINQETHRISLGMK 266
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 9/173 (5%)
Query: 1237 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1296
E +++L +V+G VKN+T G F+ L +D + +++++ V P + IG+ V
Sbjct: 190 EIVQNLEEGQVVEGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEILNIGQQVK 248
Query: 1297 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1356
+++ + + R+ + +K +S + VG + G + + YG F+ +E
Sbjct: 249 VQIIRINQETHRISLGMKQLESDPWD----GIGAKYPVGKKISGTVTNITDYGAFVELE- 303
Query: 1357 TNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407
+ GL H+SE+S N+ I ++V V +L+VD KRRISLG+K +
Sbjct: 304 PGIEGLIHISEMSWTK-KNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQT 355
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 592 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 650
++L +D N+++S + L S A+Q ++ VV G V NI + G FV LG
Sbjct: 161 EILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVD-LGG 219
Query: 651 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 710
+ G + + S+ +GQ V+ I+ +N ET RI+L +KQ
Sbjct: 220 IDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQ------------ 267
Query: 711 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 761
L+S +G K + +G I G V D+G V E
Sbjct: 268 -----------LESDPWDGIGAK----YPVGKKISGTVTNITDYGAFVELE 303
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 13/163 (7%)
Query: 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEP 1304
+ G V N+T G F+ L ++ + +S +S + + P K + V VL V+P
Sbjct: 286 ISGTVTNITDYGAFVELEPGIEGLIHISEMS--WTKKNVHPGKILSTSQEVDVVVLEVDP 343
Query: 1305 LSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLC 1363
+R+ + LK + ++ ++ H G V G++K +GLFI ++ ++ G+
Sbjct: 344 TKRRISLGLKQT-----LENPWQAFAHSHPAGTEVEGEVKNKTEFGLFIGLDG-DVDGMV 397
Query: 1364 HVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405
H+S+L + + + + G+ V+ +L VD +K RISLG+K
Sbjct: 398 HLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERISLGIK 440
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 134/605 (22%), Positives = 229/605 (37%), Gaps = 86/605 (14%)
Query: 357 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416
F +D+ G V KG V A++ AIV V+ PL EF KVG E+
Sbjct: 19 FAKTDLAEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPL---KEFGAKAKDGTLKVGDEVE 75
Query: 417 FRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 474
V +++ ++ +K + L EA +R+ G I K G F +G
Sbjct: 76 VYVERIENALGEAVLSREKARREESWQRLEVKFEAGERV--EGIIFNQVK-GGFTVDLDG 132
Query: 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SSIPASRRINLSFMMKPTRVSED 530
F PRS++ + P + + + H Q + M +I SRR L R
Sbjct: 133 AVAFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIV 192
Query: 531 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 589
++ G +V GVV +T V + G G + +A + H + ++ G +
Sbjct: 193 QNLEEGQVVEGVVKNITDYGAFVDL---GGIDGLLHVTDMAWRRVNHPS---EILNIGQQ 246
Query: 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGC 643
Q++ ++ E+ + L K QL SD + + G V NI + G
Sbjct: 247 VKVQIIRINQETHRISLGMK--------QLESDPWDGIGAKYPVGKKISGTVTNITDYGA 298
Query: 644 FVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 702
FV + G S+ + + K Q V +L+V+ RI+L LKQ+ +
Sbjct: 299 FVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLEN 358
Query: 703 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 762
A F H G+ +EG+V +FG+ + +
Sbjct: 359 PWQA-FAHSH--------------------------PAGTEVEGEVKNKTEFGLFIGLD- 390
Query: 763 HSDVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 814
DV G + L G V G V++A +LDV + + L +K + D E
Sbjct: 391 -GDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERISLGIKQLGRDAVGE 449
Query: 815 ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 874
A AS +L + V+A V V + + + L + + +D +
Sbjct: 450 A-------------AASGELRKNAVVSAEVIGVNDGGIEVRLVNHEDVTAFIRRADLSRD 496
Query: 875 KFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSL 932
+ Q+ +F GQ+V A V +L + I+E + + ++ S +G +
Sbjct: 497 RDEQRPERFSVGQTVDARVTNFSKKDRKIQLSIKALEIAEEKEAVAQFGSSDSGASLGDI 556
Query: 933 VQAEI 937
+ A +
Sbjct: 557 LGAAL 561
>sp|Q51152|YHGF_NEIMB Uncharacterized protein NMB0075 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=NMB0075 PE=4 SV=2
Length = 757
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1319 RTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1377
+TAS +E I+ +S+L VG I+ G + V ++G F+ I + GL H+S LS V +
Sbjct: 623 QTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDI-GVHQDGLVHISALSNKFVQDPR 681
Query: 1378 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1426
+ +AG+ VKVK+L+VD ++RI+L M+ A + +M SE S E
Sbjct: 682 EVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGGAKH-KMPSENRSRE 729
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 642,100,639
Number of Sequences: 539616
Number of extensions: 27257944
Number of successful extensions: 102222
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 605
Number of HSP's that attempted gapping in prelim test: 95763
Number of HSP's gapped (non-prelim): 5474
length of query: 1801
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1669
effective length of database: 120,340,147
effective search space: 200847705343
effective search space used: 200847705343
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)