Query 000242
Match_columns 1801
No_of_seqs 685 out of 4558
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 00:58:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1070 rRNA processing protei 100.0 8E-181 2E-185 1665.3 99.2 1588 1-1800 63-1705(1710)
2 KOG1070 rRNA processing protei 100.0 1E-109 2E-114 1032.0 83.1 1466 1-1757 118-1699(1710)
3 COG0539 RpsA Ribosomal protein 100.0 4.4E-63 9.5E-68 595.9 42.1 491 180-701 14-516 (541)
4 COG0539 RpsA Ribosomal protein 100.0 4.3E-59 9.3E-64 561.4 44.3 496 268-811 16-518 (541)
5 PRK12269 bifunctional cytidyla 100.0 4E-56 8.7E-61 575.7 47.0 494 179-701 313-829 (863)
6 PRK12269 bifunctional cytidyla 100.0 6.6E-55 1.4E-59 564.4 47.5 507 830-1408 315-828 (863)
7 PRK06299 rpsA 30S ribosomal pr 100.0 7.6E-55 1.6E-59 563.9 47.2 496 183-701 26-534 (565)
8 TIGR00717 rpsA ribosomal prote 100.0 6.7E-55 1.5E-59 560.4 45.6 490 183-697 14-516 (516)
9 PRK06299 rpsA 30S ribosomal pr 100.0 3.1E-54 6.6E-59 558.2 48.1 508 832-1409 26-534 (565)
10 TIGR00717 rpsA ribosomal prote 100.0 4E-53 8.6E-58 544.0 46.3 501 833-1405 15-516 (516)
11 PRK13806 rpsA 30S ribosomal pr 100.0 1E-49 2.2E-54 499.9 43.4 418 926-1407 31-451 (491)
12 PRK13806 rpsA 30S ribosomal pr 100.0 9.4E-48 2E-52 482.2 40.6 411 270-699 31-451 (491)
13 PRK07899 rpsA 30S ribosomal pr 100.0 1.1E-42 2.3E-47 426.9 35.1 333 1027-1407 33-365 (486)
14 PRK07899 rpsA 30S ribosomal pr 100.0 6.9E-42 1.5E-46 419.8 33.7 328 359-701 30-367 (486)
15 PRK06676 rpsA 30S ribosomal pr 100.0 1.1E-39 2.5E-44 403.6 34.2 334 354-701 7-351 (390)
16 PRK06676 rpsA 30S ribosomal pr 100.0 5E-39 1.1E-43 397.9 35.9 336 1027-1409 15-351 (390)
17 PRK00087 4-hydroxy-3-methylbut 100.0 5.9E-37 1.3E-41 397.9 35.7 335 1027-1408 300-635 (647)
18 PRK00087 4-hydroxy-3-methylbut 100.0 2.2E-36 4.7E-41 392.6 33.6 332 356-701 294-636 (647)
19 PRK07400 30S ribosomal protein 100.0 5E-32 1.1E-36 319.6 26.9 240 1123-1409 29-269 (318)
20 PRK07400 30S ribosomal protein 100.0 1.4E-30 3.1E-35 307.2 29.0 237 449-701 29-269 (318)
21 KOG1915 Cell cycle control pro 99.9 2.6E-23 5.7E-28 237.3 27.8 259 1532-1797 188-538 (677)
22 KOG1915 Cell cycle control pro 99.9 3.5E-22 7.5E-27 228.2 28.4 256 1532-1796 87-396 (677)
23 KOG0495 HAT repeat protein [RN 99.9 9.7E-20 2.1E-24 215.4 28.3 261 1521-1794 518-781 (913)
24 KOG0495 HAT repeat protein [RN 99.8 7.4E-19 1.6E-23 208.0 28.6 252 1529-1793 595-878 (913)
25 KOG2047 mRNA splicing factor [ 99.8 6.2E-17 1.4E-21 192.0 25.0 263 1531-1798 400-725 (835)
26 KOG2047 mRNA splicing factor [ 99.7 1.9E-15 4.2E-20 179.6 28.6 241 1529-1773 358-629 (835)
27 KOG4626 O-linked N-acetylgluco 99.7 1.5E-15 3.2E-20 179.1 21.8 247 1533-1794 233-484 (966)
28 COG2996 Predicted RNA-bindinin 99.7 5.2E-15 1.1E-19 160.9 23.7 231 449-716 3-237 (287)
29 KOG4626 O-linked N-acetylgluco 99.7 1.5E-15 3.2E-20 179.0 20.5 250 1534-1795 200-451 (966)
30 TIGR00990 3a0801s09 mitochondr 99.7 3.2E-14 6.9E-19 188.6 32.3 252 1534-1797 310-573 (615)
31 PRK15174 Vi polysaccharide exp 99.6 4.7E-14 1E-18 186.3 33.0 251 1532-1795 124-381 (656)
32 PRK15174 Vi polysaccharide exp 99.6 9.2E-14 2E-18 183.6 34.7 250 1532-1794 90-346 (656)
33 TIGR00990 3a0801s09 mitochondr 99.6 8.1E-14 1.8E-18 184.7 33.7 146 1610-1757 348-495 (615)
34 PRK11788 tetratricopeptide rep 99.6 1.4E-13 2.9E-18 172.9 33.0 258 1529-1795 46-311 (389)
35 PF13429 TPR_15: Tetratricopep 99.6 4.3E-15 9.3E-20 177.2 13.1 260 1525-1797 15-279 (280)
36 PF05843 Suf: Suppressor of fo 99.6 9.6E-15 2.1E-19 172.4 15.8 135 1661-1798 2-139 (280)
37 PTZ00248 eukaryotic translatio 99.6 4.1E-16 8.8E-21 179.4 2.5 148 1240-1392 12-172 (319)
38 TIGR02917 PEP_TPR_lipo putativ 99.6 5.7E-13 1.2E-17 185.7 32.2 249 1532-1793 649-898 (899)
39 COG1098 VacB Predicted RNA bin 99.6 3E-15 6.6E-20 142.9 6.1 75 1331-1407 2-76 (129)
40 PRK11447 cellulose synthase su 99.6 1E-12 2.2E-17 185.5 34.1 198 1531-1732 282-532 (1157)
41 PRK11447 cellulose synthase su 99.6 1.1E-12 2.3E-17 185.3 33.8 258 1531-1795 364-700 (1157)
42 TIGR02917 PEP_TPR_lipo putativ 99.6 8.9E-13 1.9E-17 183.8 32.8 251 1532-1794 479-731 (899)
43 PRK09782 bacteriophage N4 rece 99.5 1.3E-12 2.8E-17 176.1 31.2 248 1532-1794 490-739 (987)
44 COG2996 Predicted RNA-bindinin 99.5 8.1E-13 1.7E-17 144.1 23.0 216 1123-1409 3-220 (287)
45 PRK09782 bacteriophage N4 rece 99.5 4.6E-12 1E-16 170.7 33.0 245 1537-1796 460-707 (987)
46 PRK11788 tetratricopeptide rep 99.5 8.6E-12 1.9E-16 156.6 30.2 252 1531-1795 82-347 (389)
47 KOG1126 DNA-binding cell divis 99.5 1.3E-12 2.8E-17 158.8 21.2 254 1534-1794 335-619 (638)
48 KOG1914 mRNA cleavage and poly 99.5 8.8E-12 1.9E-16 146.9 26.3 236 1552-1794 237-500 (656)
49 COG1098 VacB Predicted RNA bin 99.5 3.6E-14 7.9E-19 135.6 5.1 77 624-701 2-78 (129)
50 KOG0547 Translocase of outer m 99.5 7.6E-12 1.6E-16 145.8 24.9 240 1529-1778 337-583 (606)
51 PF13429 TPR_15: Tetratricopep 99.4 5.2E-13 1.1E-17 159.3 14.5 216 1531-1757 57-276 (280)
52 KOG1155 Anaphase-promoting com 99.4 1.2E-11 2.5E-16 143.6 24.7 248 1535-1794 244-494 (559)
53 COG3063 PilF Tfp pilus assembl 99.4 2E-11 4.4E-16 131.1 23.3 192 1592-1788 36-229 (250)
54 PRK12370 invasion protein regu 99.4 1.9E-11 4.1E-16 159.3 28.1 244 1534-1792 277-532 (553)
55 cd05705 S1_Rrp5_repeat_hs14 S1 99.4 6.3E-13 1.4E-17 122.5 9.0 71 1242-1312 1-74 (74)
56 cd05705 S1_Rrp5_repeat_hs14 S1 99.4 6.5E-13 1.4E-17 122.4 8.8 71 1332-1403 1-74 (74)
57 KOG2076 RNA polymerase III tra 99.4 1.2E-10 2.6E-15 145.6 31.1 154 1527-1687 148-308 (895)
58 TIGR00540 hemY_coli hemY prote 99.4 2.9E-10 6.2E-15 142.9 35.1 265 1522-1798 88-402 (409)
59 KOG0547 Translocase of outer m 99.4 4.6E-11 1E-15 139.4 24.0 234 1553-1798 327-569 (606)
60 TIGR02521 type_IV_pilW type IV 99.4 9.2E-11 2E-15 134.9 26.9 199 1591-1794 31-231 (234)
61 PTZ00248 eukaryotic translatio 99.4 9.2E-13 2E-17 152.0 9.7 109 624-759 13-125 (319)
62 PRK12370 invasion protein regu 99.4 1E-10 2.3E-15 152.4 29.4 236 1547-1794 251-501 (553)
63 PRK10049 pgaA outer membrane p 99.4 1.7E-10 3.8E-15 155.9 32.5 260 1531-1795 129-456 (765)
64 TIGR02521 type_IV_pilW type IV 99.4 1.4E-10 2.9E-15 133.5 27.0 199 1550-1757 29-231 (234)
65 cd05694 S1_Rrp5_repeat_hs2_sc2 99.4 3.4E-12 7.3E-17 117.4 9.9 71 624-700 1-72 (74)
66 cd05694 S1_Rrp5_repeat_hs2_sc2 99.4 2E-12 4.2E-17 119.0 8.4 71 95-167 1-71 (74)
67 PLN03218 maturation of RBCL 1; 99.4 3.2E-10 7E-15 154.2 33.4 251 1534-1793 488-746 (1060)
68 PRK10049 pgaA outer membrane p 99.3 1.5E-10 3.2E-15 156.6 29.8 254 1531-1795 96-422 (765)
69 cd05703 S1_Rrp5_repeat_hs12_sc 99.3 3.4E-12 7.3E-17 117.5 8.9 70 1335-1405 1-72 (73)
70 PRK10747 putative protoheme IX 99.3 8.1E-10 1.8E-14 138.1 33.3 231 1552-1797 117-392 (398)
71 KOG1155 Anaphase-promoting com 99.3 2.4E-10 5.3E-15 132.9 26.0 252 1533-1795 277-536 (559)
72 KOG1258 mRNA processing protei 99.3 3E-10 6.5E-15 137.9 27.7 250 1537-1794 64-394 (577)
73 KOG1914 mRNA cleavage and poly 99.3 2.1E-10 4.5E-15 135.6 25.1 265 1521-1794 22-359 (656)
74 PF05843 Suf: Suppressor of fo 99.3 1.6E-11 3.5E-16 145.1 16.1 140 1592-1733 2-145 (280)
75 COG3063 PilF Tfp pilus assembl 99.3 3.3E-10 7.3E-15 121.9 23.7 196 1552-1757 35-235 (250)
76 KOG1126 DNA-binding cell divis 99.3 3.7E-11 8E-16 146.4 18.4 213 1542-1765 411-625 (638)
77 KOG2396 HAT (Half-A-TPR) repea 99.3 3.3E-10 7.3E-15 133.3 25.3 256 1536-1799 123-563 (568)
78 cd05703 S1_Rrp5_repeat_hs12_sc 99.3 6.9E-12 1.5E-16 115.5 9.2 70 1245-1314 1-72 (73)
79 cd04461 S1_Rrp5_repeat_hs8_sc7 99.3 6.5E-12 1.4E-16 119.5 8.4 79 618-696 5-83 (83)
80 PLN03218 maturation of RBCL 1; 99.3 1.3E-09 2.8E-14 148.4 33.0 252 1533-1794 452-712 (1060)
81 PRK11189 lipoprotein NlpI; Pro 99.3 1.1E-09 2.3E-14 131.4 27.2 207 1537-1757 45-264 (296)
82 cd05693 S1_Rrp5_repeat_hs1_sc1 99.3 1E-11 2.2E-16 121.2 8.1 86 1-88 5-100 (100)
83 cd05704 S1_Rrp5_repeat_hs13 S1 99.3 1.3E-11 2.9E-16 113.4 8.2 71 1332-1405 1-72 (72)
84 cd05698 S1_Rrp5_repeat_hs6_sc5 99.3 1.7E-11 3.8E-16 112.6 8.6 70 628-697 1-70 (70)
85 PF00575 S1: S1 RNA binding do 99.2 3.6E-11 7.7E-16 112.0 10.6 73 625-697 2-74 (74)
86 cd05704 S1_Rrp5_repeat_hs13 S1 99.2 3E-11 6.5E-16 111.1 8.7 71 1242-1314 1-72 (72)
87 cd05686 S1_pNO40 S1_pNO40: pNO 99.2 4E-11 8.6E-16 110.9 9.4 71 1333-1404 2-72 (73)
88 cd05706 S1_Rrp5_repeat_sc10 S1 99.2 5.4E-11 1.2E-15 110.4 9.9 73 1332-1405 1-73 (73)
89 cd05696 S1_Rrp5_repeat_hs4 S1_ 99.2 3.9E-11 8.3E-16 110.1 8.7 69 1335-1404 1-71 (71)
90 PF00575 S1: S1 RNA binding do 99.2 6.7E-11 1.5E-15 110.1 10.3 73 1242-1314 2-74 (74)
91 TIGR00540 hemY_coli hemY prote 99.2 1.9E-09 4E-14 135.6 26.7 228 1523-1757 158-398 (409)
92 cd05706 S1_Rrp5_repeat_sc10 S1 99.2 8.4E-11 1.8E-15 109.0 10.7 73 1242-1314 1-73 (73)
93 COG2956 Predicted N-acetylgluc 99.2 1.1E-08 2.3E-13 114.8 28.5 225 1528-1757 45-277 (389)
94 cd05708 S1_Rrp5_repeat_sc12 S1 99.2 6.8E-11 1.5E-15 111.1 9.8 77 1333-1409 1-77 (77)
95 cd05698 S1_Rrp5_repeat_hs6_sc5 99.2 5.5E-11 1.2E-15 109.3 8.6 70 1335-1405 1-70 (70)
96 cd04461 S1_Rrp5_repeat_hs8_sc7 99.2 6E-11 1.3E-15 112.9 9.1 78 1236-1313 6-83 (83)
97 COG5107 RNA14 Pre-mRNA 3'-end 99.2 1.5E-09 3.2E-14 125.3 21.4 232 1553-1796 262-532 (660)
98 cd05697 S1_Rrp5_repeat_hs5 S1_ 99.2 7.4E-11 1.6E-15 108.0 8.9 69 1335-1404 1-69 (69)
99 cd05696 S1_Rrp5_repeat_hs4 S1_ 99.2 8.4E-11 1.8E-15 107.8 8.8 69 628-696 1-71 (71)
100 cd05707 S1_Rrp5_repeat_sc11 S1 99.2 6.8E-11 1.5E-15 107.9 8.0 68 628-695 1-68 (68)
101 cd05697 S1_Rrp5_repeat_hs5 S1_ 99.2 8.7E-11 1.9E-15 107.6 8.7 69 628-696 1-69 (69)
102 PRK08582 hypothetical protein; 99.2 1E-10 2.2E-15 121.2 9.8 75 1331-1407 2-76 (139)
103 PRK11189 lipoprotein NlpI; Pro 99.1 6.9E-09 1.5E-13 124.4 26.4 219 1566-1795 40-265 (296)
104 PRK08582 hypothetical protein; 99.1 2E-10 4.4E-15 119.0 11.0 79 1242-1321 3-81 (139)
105 cd05707 S1_Rrp5_repeat_sc11 S1 99.1 1.2E-10 2.7E-15 106.2 8.1 68 1335-1403 1-68 (68)
106 PLN03081 pentatricopeptide (PP 99.1 5.6E-09 1.2E-13 140.9 27.4 247 1534-1793 306-555 (697)
107 KOG1173 Anaphase-promoting com 99.1 7.6E-09 1.6E-13 123.8 24.8 230 1543-1781 303-542 (611)
108 cd05693 S1_Rrp5_repeat_hs1_sc1 99.1 1E-10 2.3E-15 114.2 7.0 77 1242-1318 1-99 (100)
109 cd04452 S1_IF2_alpha S1_IF2_al 99.1 3.2E-10 7E-15 106.2 9.9 74 1333-1406 2-76 (76)
110 PRK07252 hypothetical protein; 99.1 2.8E-10 6.1E-15 114.6 10.1 76 1333-1409 2-77 (120)
111 PRK07252 hypothetical protein; 99.1 3.1E-10 6.7E-15 114.3 10.2 76 626-701 2-77 (120)
112 COG5107 RNA14 Pre-mRNA 3'-end 99.1 1.3E-08 2.9E-13 117.5 24.1 251 1536-1798 60-365 (660)
113 cd05690 S1_RPS1_repeat_ec5 S1_ 99.1 2.7E-10 5.8E-15 104.5 8.4 68 1335-1403 1-69 (69)
114 KOG2002 TPR-containing nuclear 99.1 2E-08 4.3E-13 126.9 26.8 254 1535-1799 147-446 (1018)
115 KOG1258 mRNA processing protei 99.1 2.6E-08 5.6E-13 121.4 27.0 245 1533-1786 94-420 (577)
116 KOG1173 Anaphase-promoting com 99.1 8.7E-09 1.9E-13 123.3 22.4 252 1531-1794 257-517 (611)
117 KOG1129 TPR repeat-containing 99.1 5.6E-09 1.2E-13 116.3 18.8 226 1556-1794 227-457 (478)
118 cd04452 S1_IF2_alpha S1_IF2_al 99.1 5.9E-10 1.3E-14 104.4 9.7 73 626-698 2-76 (76)
119 cd05708 S1_Rrp5_repeat_sc12 S1 99.1 5E-10 1.1E-14 105.2 9.2 74 626-699 1-75 (77)
120 PRK05807 hypothetical protein; 99.1 5.1E-10 1.1E-14 115.7 10.0 74 1331-1407 2-75 (136)
121 cd05690 S1_RPS1_repeat_ec5 S1_ 99.1 3.5E-10 7.5E-15 103.7 7.7 68 628-695 1-69 (69)
122 PRK10747 putative protoheme IX 99.1 1.9E-08 4.2E-13 125.8 25.8 227 1523-1757 158-389 (398)
123 PLN03081 pentatricopeptide (PP 99.1 1.8E-08 3.9E-13 135.9 27.2 222 1553-1791 260-487 (697)
124 KOG2002 TPR-containing nuclear 99.1 1.2E-08 2.5E-13 128.9 23.0 80 1711-1793 628-707 (1018)
125 cd05691 S1_RPS1_repeat_ec6 S1_ 99.0 6.6E-10 1.4E-14 103.2 9.0 71 1335-1406 1-71 (73)
126 cd05686 S1_pNO40 S1_pNO40: pNO 99.0 8.8E-10 1.9E-14 101.9 9.3 70 626-696 2-72 (73)
127 cd05689 S1_RPS1_repeat_ec4 S1_ 99.0 8.4E-10 1.8E-14 102.1 9.1 71 1332-1403 1-72 (72)
128 cd05695 S1_Rrp5_repeat_hs3 S1_ 99.0 7.4E-10 1.6E-14 99.9 8.4 66 628-695 1-66 (66)
129 cd05695 S1_Rrp5_repeat_hs3 S1_ 99.0 8.7E-10 1.9E-14 99.5 8.5 66 1335-1403 1-66 (66)
130 cd05689 S1_RPS1_repeat_ec4 S1_ 99.0 1.1E-09 2.5E-14 101.2 8.7 71 625-695 1-72 (72)
131 cd05691 S1_RPS1_repeat_ec6 S1_ 99.0 1.7E-09 3.6E-14 100.4 9.8 72 1245-1316 1-72 (73)
132 KOG1125 TPR repeat-containing 99.0 5.2E-09 1.1E-13 125.9 16.2 241 1531-1783 298-559 (579)
133 PLN03077 Protein ECB2; Provisi 99.0 6.2E-08 1.4E-12 134.0 29.3 246 1534-1793 471-718 (857)
134 PLN03077 Protein ECB2; Provisi 99.0 4.6E-08 9.9E-13 135.3 27.2 227 1552-1793 354-616 (857)
135 PRK08059 general stress protei 99.0 2.1E-09 4.5E-14 109.9 10.1 79 1329-1408 2-80 (123)
136 cd05687 S1_RPS1_repeat_ec1_hs1 99.0 2.2E-09 4.7E-14 98.7 9.0 70 628-697 1-70 (70)
137 cd05687 S1_RPS1_repeat_ec1_hs1 99.0 2.5E-09 5.4E-14 98.3 9.4 70 1245-1314 1-70 (70)
138 cd05684 S1_DHX8_helicase S1_DH 99.0 2.6E-09 5.6E-14 100.7 9.6 71 1335-1407 1-74 (79)
139 PRK05807 hypothetical protein; 98.9 3.2E-09 7E-14 109.8 10.5 75 1241-1317 2-76 (136)
140 KOG1129 TPR repeat-containing 98.9 3.8E-08 8.2E-13 109.8 19.2 195 1596-1794 228-423 (478)
141 COG2956 Predicted N-acetylgluc 98.9 2.3E-07 5.1E-12 104.3 25.5 223 1563-1794 46-277 (389)
142 cd05692 S1_RPS1_repeat_hs4 S1_ 98.9 2.8E-09 6E-14 97.7 8.9 69 1335-1405 1-69 (69)
143 PRK08059 general stress protei 98.9 4.4E-09 9.6E-14 107.5 11.2 81 1240-1320 3-83 (123)
144 cd05699 S1_Rrp5_repeat_hs7 S1_ 98.9 2.1E-09 4.5E-14 95.3 7.2 72 536-608 1-72 (72)
145 KOG2076 RNA polymerase III tra 98.9 1.8E-07 3.9E-12 117.9 26.9 232 1555-1795 142-478 (895)
146 PHA02945 interferon resistance 98.9 3.4E-09 7.3E-14 96.3 8.5 73 1332-1407 9-84 (88)
147 KOG1125 TPR repeat-containing 98.9 3.4E-08 7.5E-13 119.1 19.7 230 1557-1798 290-530 (579)
148 cd05685 S1_Tex S1_Tex: The C-t 98.9 3E-09 6.6E-14 97.2 8.0 68 1335-1403 1-68 (68)
149 cd04465 S1_RPS1_repeat_ec2_hs2 98.9 4.2E-09 9.1E-14 95.8 8.9 67 628-697 1-67 (67)
150 cd05692 S1_RPS1_repeat_hs4 S1_ 98.9 3.8E-09 8.2E-14 96.8 8.7 69 628-697 1-69 (69)
151 PLN02789 farnesyltranstransfer 98.9 3.9E-07 8.4E-12 109.2 27.7 230 1532-1771 51-312 (320)
152 KOG0128 RNA-binding protein SA 98.9 2.4E-07 5.3E-12 115.5 26.0 218 1546-1774 141-389 (881)
153 KOG1840 Kinesin light chain [C 98.9 2.3E-07 5.1E-12 115.5 25.7 248 1549-1800 196-484 (508)
154 cd05685 S1_Tex S1_Tex: The C-t 98.9 4.3E-09 9.3E-14 96.2 7.7 68 628-695 1-68 (68)
155 PRK14574 hmsH outer membrane p 98.9 5.3E-07 1.2E-11 120.1 30.3 252 1531-1793 115-511 (822)
156 KOG0624 dsRNA-activated protei 98.9 1E-06 2.2E-11 99.3 26.2 263 1531-1798 85-373 (504)
157 KOG0128 RNA-binding protein SA 98.8 3.3E-07 7.1E-12 114.4 24.6 268 1521-1790 152-558 (881)
158 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 98.8 7.7E-09 1.7E-13 99.3 8.4 76 1332-1409 4-83 (86)
159 PRK15179 Vi polysaccharide bio 98.8 1.1E-07 2.4E-12 124.3 21.6 130 1626-1757 86-216 (694)
160 KOG2003 TPR repeat-containing 98.8 4.6E-07 1E-11 104.4 23.6 260 1519-1791 420-685 (840)
161 PRK15179 Vi polysaccharide bio 98.8 1.8E-07 4E-12 122.2 23.1 158 1634-1796 57-218 (694)
162 PRK14574 hmsH outer membrane p 98.8 9.8E-07 2.1E-11 117.6 30.3 135 1531-1672 81-215 (822)
163 TIGR02696 pppGpp_PNP guanosine 98.8 6.3E-09 1.4E-13 132.2 9.1 101 1300-1403 611-718 (719)
164 cd05688 S1_RPS1_repeat_ec3 S1_ 98.8 1.3E-08 2.8E-13 93.0 8.8 68 1334-1403 1-68 (68)
165 cd04465 S1_RPS1_repeat_ec2_hs2 98.8 1.5E-08 3.3E-13 92.1 9.1 67 1335-1405 1-67 (67)
166 PRK15359 type III secretion sy 98.8 9.2E-08 2E-12 101.5 16.5 123 1613-1739 13-136 (144)
167 cd05684 S1_DHX8_helicase S1_DH 98.8 2.2E-08 4.8E-13 94.4 10.2 72 1245-1318 1-76 (79)
168 PLN02789 farnesyltranstransfer 98.8 8.3E-07 1.8E-11 106.3 26.0 206 1550-1765 35-255 (320)
169 TIGR03302 OM_YfiO outer membra 98.8 4.2E-07 9E-12 105.6 23.1 188 1548-1757 29-231 (235)
170 COG1093 SUI2 Translation initi 98.8 4.8E-09 1E-13 114.6 6.2 76 1332-1407 9-85 (269)
171 cd04472 S1_PNPase S1_PNPase: P 98.8 1.5E-08 3.3E-13 92.6 8.6 68 1335-1404 1-68 (68)
172 PHA02945 interferon resistance 98.8 1.9E-08 4.1E-13 91.5 8.8 72 1243-1317 10-85 (88)
173 cd04472 S1_PNPase S1_PNPase: P 98.8 1.5E-08 3.2E-13 92.6 8.4 68 628-696 1-68 (68)
174 cd04471 S1_RNase_R S1_RNase_R: 98.8 2.5E-08 5.4E-13 95.2 9.7 71 1334-1404 1-82 (83)
175 KOG1128 Uncharacterized conser 98.8 1.7E-07 3.6E-12 115.6 18.6 216 1556-1797 402-618 (777)
176 PLN00207 polyribonucleotide nu 98.8 1.1E-08 2.4E-13 132.7 8.9 78 1330-1409 749-827 (891)
177 smart00316 S1 Ribosomal protei 98.8 2.4E-08 5.2E-13 92.2 8.8 71 627-697 2-72 (72)
178 smart00316 S1 Ribosomal protei 98.8 3.2E-08 7E-13 91.3 9.3 72 1243-1314 1-72 (72)
179 cd04453 S1_RNase_E S1_RNase_E: 98.8 2.6E-08 5.6E-13 95.1 8.7 75 1331-1406 4-83 (88)
180 KOG1128 Uncharacterized conser 98.7 7.5E-08 1.6E-12 118.6 14.3 199 1534-1757 414-615 (777)
181 cd05688 S1_RPS1_repeat_ec3 S1_ 98.7 2.7E-08 5.8E-13 90.9 8.1 68 627-695 1-68 (68)
182 COG2183 Tex Transcriptional ac 98.7 1.3E-08 2.8E-13 127.7 7.8 85 1234-1318 648-732 (780)
183 PRK03987 translation initiatio 98.7 2.5E-08 5.4E-13 114.5 9.5 76 1332-1407 6-82 (262)
184 cd05804 StaR_like StaR_like; a 98.7 7.8E-07 1.7E-11 110.3 23.7 187 1533-1726 21-217 (355)
185 KOG1840 Kinesin light chain [C 98.7 5.9E-07 1.3E-11 112.0 21.9 225 1531-1757 212-478 (508)
186 COG2183 Tex Transcriptional ac 98.7 1.4E-08 3.1E-13 127.4 7.6 79 1328-1407 652-730 (780)
187 PRK10370 formate-dependent nit 98.7 3.7E-07 7.9E-12 102.3 18.3 114 1642-1757 55-172 (198)
188 KOG4162 Predicted calmodulin-b 98.7 2.5E-06 5.5E-11 106.1 26.4 250 1537-1797 463-785 (799)
189 cd04473 S1_RecJ_like S1_RecJ_l 98.7 5.8E-08 1.3E-12 90.7 9.5 67 1328-1404 10-76 (77)
190 TIGR03302 OM_YfiO outer membra 98.7 1E-06 2.2E-11 102.4 22.2 164 1627-1793 34-230 (235)
191 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 98.7 3.9E-08 8.5E-13 94.4 8.5 74 626-700 5-82 (86)
192 PRK10370 formate-dependent nit 98.7 2.2E-07 4.9E-12 104.0 15.5 121 1608-1730 54-179 (198)
193 KOG0624 dsRNA-activated protei 98.7 2.8E-06 6E-11 95.9 23.3 218 1531-1757 51-297 (504)
194 KOG3060 Uncharacterized conser 98.7 3.4E-06 7.4E-11 92.4 23.2 192 1534-1734 28-230 (289)
195 KOG1174 Anaphase-promoting com 98.7 3E-06 6.5E-11 97.9 23.9 230 1529-1765 243-505 (564)
196 KOG3060 Uncharacterized conser 98.7 2.9E-06 6.3E-11 93.0 22.4 155 1636-1795 62-220 (289)
197 PLN00207 polyribonucleotide nu 98.7 3.7E-08 8E-13 128.0 9.3 82 1241-1323 750-832 (891)
198 cd05804 StaR_like StaR_like; a 98.7 7.5E-06 1.6E-10 101.5 29.4 203 1548-1756 2-213 (355)
199 cd04454 S1_Rrp4_like S1_Rrp4_l 98.7 8.1E-08 1.8E-12 91.2 8.8 76 1332-1409 4-79 (82)
200 KOG1174 Anaphase-promoting com 98.7 2.4E-06 5.2E-11 98.7 21.7 200 1534-1743 316-519 (564)
201 COG1093 SUI2 Translation initi 98.7 4.3E-08 9.4E-13 107.3 7.5 75 627-701 11-87 (269)
202 cd05702 S1_Rrp5_repeat_hs11_sc 98.6 7E-08 1.5E-12 88.5 7.8 63 1335-1398 1-65 (70)
203 TIGR02696 pppGpp_PNP guanosine 98.6 6.2E-08 1.3E-12 123.4 9.7 71 624-695 644-718 (719)
204 PRK09521 exosome complex RNA-b 98.6 1.8E-07 4E-12 103.5 12.3 96 1300-1409 41-145 (189)
205 cd04473 S1_RecJ_like S1_RecJ_l 98.6 1.7E-07 3.8E-12 87.5 10.1 67 621-696 10-76 (77)
206 cd04453 S1_RNase_E S1_RNase_E: 98.6 1.2E-07 2.6E-12 90.6 9.0 75 1241-1315 4-83 (88)
207 cd04471 S1_RNase_R S1_RNase_R: 98.6 1.3E-07 2.8E-12 90.2 9.2 70 627-696 1-82 (83)
208 cd05702 S1_Rrp5_repeat_hs11_sc 98.6 1.1E-07 2.3E-12 87.4 8.1 62 1245-1306 1-64 (70)
209 COG1185 Pnp Polyribonucleotide 98.6 4.3E-08 9.3E-13 121.1 7.1 104 1300-1406 585-689 (692)
210 KOG2003 TPR repeat-containing 98.6 4.5E-06 9.8E-11 96.5 22.6 217 1534-1765 472-694 (840)
211 PRK15359 type III secretion sy 98.6 6.7E-07 1.5E-11 94.9 15.0 117 1645-1769 12-129 (144)
212 TIGR02552 LcrH_SycD type III s 98.6 1.1E-06 2.5E-11 92.3 16.6 117 1614-1732 4-122 (135)
213 PRK03987 translation initiatio 98.6 1E-07 2.2E-12 109.6 9.1 76 626-701 7-84 (262)
214 cd04454 S1_Rrp4_like S1_Rrp4_l 98.6 1.9E-07 4E-12 88.7 8.9 73 1243-1316 5-77 (82)
215 COG3071 HemY Uncharacterized e 98.6 6.6E-05 1.4E-09 87.9 31.2 251 1531-1796 97-391 (400)
216 PRK11824 polynucleotide phosph 98.6 1.2E-07 2.5E-12 124.7 9.6 76 1330-1407 617-692 (693)
217 cd00164 S1_like S1_like: Ribos 98.5 1.4E-07 3E-12 85.1 6.8 65 631-695 1-65 (65)
218 PRK14720 transcript cleavage f 98.5 9.3E-06 2E-10 106.8 25.1 211 1547-1766 26-258 (906)
219 TIGR02552 LcrH_SycD type III s 98.5 1.7E-06 3.8E-11 90.9 15.1 115 1647-1765 4-119 (135)
220 KOG4162 Predicted calmodulin-b 98.5 1.1E-05 2.4E-10 100.6 23.5 220 1536-1757 496-782 (799)
221 cd00164 S1_like S1_like: Ribos 98.5 2.8E-07 6.1E-12 83.1 7.3 65 1248-1312 1-65 (65)
222 KOG1156 N-terminal acetyltrans 98.4 7.2E-05 1.6E-09 91.9 27.9 148 1534-1688 91-283 (700)
223 PRK11824 polynucleotide phosph 98.4 4.3E-07 9.3E-12 119.4 9.9 75 623-698 617-691 (693)
224 cd04460 S1_RpoE S1_RpoE: RpoE, 98.4 6.5E-07 1.4E-11 88.3 8.8 73 1336-1410 1-89 (99)
225 cd05699 S1_Rrp5_repeat_hs7 S1_ 98.4 6.4E-07 1.4E-11 79.7 7.3 62 741-805 1-72 (72)
226 COG4783 Putative Zn-dependent 98.4 1.2E-05 2.7E-10 96.2 19.9 130 1626-1757 306-436 (484)
227 PRK09521 exosome complex RNA-b 98.4 2.3E-06 4.9E-11 94.9 12.1 74 1240-1316 60-143 (189)
228 PRK14720 transcript cleavage f 98.4 1.6E-05 3.4E-10 104.7 21.7 197 1590-1796 30-253 (906)
229 PF12569 NARP1: NMDA receptor- 98.4 0.00017 3.6E-09 91.6 30.1 88 1667-1756 201-289 (517)
230 TIGR03591 polynuc_phos polyrib 98.3 6E-07 1.3E-11 117.7 7.9 71 1330-1402 614-684 (684)
231 COG3071 HemY Uncharacterized e 98.3 0.00018 3.8E-09 84.4 26.5 223 1521-1757 156-389 (400)
232 PF08424 NRDE-2: NRDE-2, neces 98.3 1.5E-05 3.3E-10 96.4 18.8 159 1538-1725 5-184 (321)
233 KOG0550 Molecular chaperone (D 98.3 1.2E-05 2.6E-10 93.5 16.7 252 1534-1795 65-350 (486)
234 KOG1127 TPR repeat-containing 98.3 3.6E-05 7.7E-10 97.9 21.4 181 1609-1794 474-658 (1238)
235 PF12569 NARP1: NMDA receptor- 98.3 0.00012 2.5E-09 93.0 26.3 224 1532-1757 52-333 (517)
236 KOG2396 HAT (Half-A-TPR) repea 98.3 1.2E-05 2.5E-10 95.9 16.1 98 1643-1742 88-187 (568)
237 COG5010 TadD Flp pilus assembl 98.3 6E-05 1.3E-09 84.0 20.7 158 1595-1756 70-229 (257)
238 PRK04163 exosome complex RNA-b 98.3 4.7E-06 1E-10 95.2 12.0 79 1331-1411 60-142 (235)
239 KOG1156 N-terminal acetyltrans 98.3 5.6E-05 1.2E-09 92.8 20.9 216 1534-1757 57-282 (700)
240 TIGR03591 polynuc_phos polyrib 98.2 1.8E-06 3.9E-11 113.3 8.9 71 623-694 614-684 (684)
241 COG5010 TadD Flp pilus assembl 98.2 9.2E-05 2E-09 82.6 20.5 176 1536-1721 51-228 (257)
242 COG4783 Putative Zn-dependent 98.2 9.6E-05 2.1E-09 88.7 21.7 131 1657-1792 303-434 (484)
243 COG4700 Uncharacterized protei 98.2 0.00012 2.6E-09 76.6 19.2 147 1610-1757 73-225 (251)
244 PF08424 NRDE-2: NRDE-2, neces 98.2 6.2E-05 1.3E-09 91.1 20.1 148 1647-1796 6-184 (321)
245 COG4235 Cytochrome c biogenesi 98.2 2.9E-05 6.2E-10 88.8 15.6 119 1608-1728 137-260 (287)
246 cd04455 S1_NusA S1_NusA: N-uti 98.2 6.6E-06 1.4E-10 74.7 8.5 63 626-695 2-66 (67)
247 cd04460 S1_RpoE S1_RpoE: RpoE, 98.2 5.7E-06 1.2E-10 81.6 8.5 76 1246-1322 1-92 (99)
248 COG1185 Pnp Polyribonucleotide 98.2 2.6E-06 5.6E-11 105.8 7.1 103 594-698 585-689 (692)
249 PLN03088 SGT1, suppressor of 98.2 3E-05 6.4E-10 95.3 16.3 108 1630-1739 6-114 (356)
250 cd04455 S1_NusA S1_NusA: N-uti 98.1 1.1E-05 2.5E-10 73.1 8.9 63 1243-1312 2-66 (67)
251 PRK04163 exosome complex RNA-b 98.1 2E-05 4.4E-10 90.1 12.8 72 450-522 62-137 (235)
252 KOG0548 Molecular co-chaperone 98.1 0.00039 8.4E-09 84.3 23.8 218 1532-1756 238-487 (539)
253 PRK09202 nusA transcription el 98.1 3.8E-06 8.3E-11 104.3 7.3 107 408-522 86-200 (470)
254 cd00189 TPR Tetratricopeptide 98.1 2.9E-05 6.3E-10 74.4 12.1 96 1629-1726 3-99 (100)
255 COG1095 RPB7 DNA-directed RNA 98.1 8E-06 1.7E-10 86.1 8.3 78 1332-1411 79-172 (183)
256 KOG0553 TPR repeat-containing 98.1 3.4E-05 7.4E-10 87.4 13.8 130 1634-1765 89-222 (304)
257 TIGR00448 rpoE DNA-directed RN 98.1 1.1E-05 2.5E-10 88.5 9.9 78 1332-1411 79-172 (179)
258 PRK09202 nusA transcription el 98.1 3.7E-06 8.1E-11 104.4 6.5 119 583-715 86-210 (470)
259 TIGR02795 tol_pal_ybgF tol-pal 98.1 6.3E-05 1.4E-09 76.7 14.6 102 1628-1729 4-110 (119)
260 PF09976 TPR_21: Tetratricopep 98.1 9.3E-05 2E-09 78.8 16.0 118 1638-1756 23-145 (145)
261 PRK10866 outer membrane biogen 98.0 0.00087 1.9E-08 77.7 24.4 184 1551-1756 31-239 (243)
262 PRK04841 transcriptional regul 98.0 0.00095 2.1E-08 93.8 29.5 265 1530-1797 464-762 (903)
263 cd00189 TPR Tetratricopeptide 98.0 5.2E-05 1.1E-09 72.6 11.7 94 1662-1757 2-96 (100)
264 PLN03088 SGT1, suppressor of 98.0 8.6E-05 1.9E-09 91.3 15.9 99 1663-1765 5-104 (356)
265 TIGR02063 RNase_R ribonuclease 98.0 1.5E-05 3.2E-10 106.7 9.9 76 1329-1404 622-708 (709)
266 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0001 2.2E-09 90.1 16.2 117 1632-1753 175-292 (395)
267 TIGR02795 tol_pal_ybgF tol-pal 98.0 9.8E-05 2.1E-09 75.3 13.8 104 1660-1765 2-110 (119)
268 cd05791 S1_CSL4 S1_CSL4: CSL4, 98.0 2.1E-05 4.5E-10 75.9 8.1 74 1332-1407 4-87 (92)
269 PF13525 YfiO: Outer membrane 98.0 0.00082 1.8E-08 75.9 22.2 177 1551-1749 4-198 (203)
270 KOG1127 TPR repeat-containing 98.0 0.00011 2.4E-09 93.6 15.7 186 1533-1727 473-662 (1238)
271 KOG0553 TPR repeat-containing 97.9 0.00021 4.6E-09 81.2 16.3 109 1666-1780 87-197 (304)
272 PRK15363 pathogenicity island 97.9 0.00032 7E-09 73.5 16.3 97 1627-1725 36-133 (157)
273 PRK11642 exoribonuclease R; Pr 97.9 3.1E-05 6.8E-10 103.2 9.7 75 1331-1405 640-725 (813)
274 TIGR00448 rpoE DNA-directed RN 97.9 4.4E-05 9.5E-10 83.9 9.2 74 627-701 81-170 (179)
275 PRK15363 pathogenicity island 97.9 0.00019 4.1E-09 75.2 13.3 99 1657-1757 32-131 (157)
276 KOG1067 Predicted RNA-binding 97.8 1.5E-05 3.3E-10 94.9 5.0 75 623-697 664-738 (760)
277 PRK10153 DNA-binding transcrip 97.8 0.00065 1.4E-08 87.0 20.1 112 1675-1792 400-511 (517)
278 CHL00033 ycf3 photosystem I as 97.8 0.00025 5.5E-09 77.6 14.0 116 1642-1757 15-141 (168)
279 PF09976 TPR_21: Tetratricopep 97.8 0.00051 1.1E-08 73.2 15.9 134 1641-1793 7-145 (145)
280 PRK04841 transcriptional regul 97.8 0.0041 8.9E-08 87.4 29.7 237 1558-1797 458-722 (903)
281 cd05791 S1_CSL4 S1_CSL4: CSL4, 97.8 6E-05 1.3E-09 72.8 7.8 73 1243-1316 5-87 (92)
282 PF13432 TPR_16: Tetratricopep 97.8 5.1E-05 1.1E-09 68.5 6.8 63 1700-1764 2-64 (65)
283 KOG3617 WD40 and TPR repeat-co 97.8 0.0027 5.8E-08 79.3 23.3 226 1557-1798 805-1112(1416)
284 PRK08563 DNA-directed RNA poly 97.8 9.1E-05 2E-09 82.3 10.1 78 1332-1411 79-172 (187)
285 PF14938 SNAP: Soluble NSF att 97.8 0.00052 1.1E-08 81.9 17.2 172 1609-1793 31-223 (282)
286 TIGR00358 3_prime_RNase VacB a 97.8 5.8E-05 1.2E-09 99.6 9.8 74 1331-1404 569-653 (654)
287 PRK10803 tol-pal system protei 97.8 0.00036 7.7E-09 81.4 15.3 96 1635-1730 152-252 (263)
288 PRK11906 transcriptional regul 97.8 0.00083 1.8E-08 81.6 18.5 175 1546-1721 242-433 (458)
289 KOG0548 Molecular co-chaperone 97.8 0.003 6.5E-08 76.9 22.7 221 1560-1793 232-487 (539)
290 COG4235 Cytochrome c biogenesi 97.7 0.00057 1.2E-08 78.5 15.5 121 1642-1765 138-262 (287)
291 KOG2376 Signal recognition par 97.7 0.011 2.4E-07 72.7 26.4 243 1547-1795 169-487 (652)
292 COG5191 Uncharacterized conser 97.7 5.3E-05 1.2E-09 84.8 6.6 92 1681-1777 95-187 (435)
293 PRK02603 photosystem I assembl 97.7 0.00091 2E-08 73.6 16.2 100 1663-1764 38-153 (172)
294 TIGR01953 NusA transcription t 97.7 5.6E-05 1.2E-09 90.4 7.0 120 581-715 81-208 (341)
295 KOG3617 WD40 and TPR repeat-co 97.7 0.0033 7.2E-08 78.5 21.9 224 1550-1792 755-1048(1416)
296 PF13414 TPR_11: TPR repeat; P 97.7 0.00017 3.7E-09 65.9 8.7 62 1696-1757 4-66 (69)
297 COG5191 Uncharacterized conser 97.7 4.5E-05 9.7E-10 85.4 5.4 155 1567-1741 32-188 (435)
298 TIGR02063 RNase_R ribonuclease 97.7 9.2E-05 2E-09 99.1 9.6 72 625-696 625-708 (709)
299 KOG2376 Signal recognition par 97.7 0.014 2.9E-07 71.9 26.6 246 1547-1800 105-451 (652)
300 PRK10803 tol-pal system protei 97.7 0.00078 1.7E-08 78.6 15.9 104 1659-1764 141-250 (263)
301 COG3898 Uncharacterized membra 97.7 0.025 5.5E-07 66.1 27.1 144 1642-1794 245-391 (531)
302 TIGR01953 NusA transcription t 97.7 7.1E-05 1.5E-09 89.5 7.1 108 407-522 82-198 (341)
303 PF04733 Coatomer_E: Coatomer 97.6 0.00055 1.2E-08 81.3 14.2 155 1561-1729 111-270 (290)
304 PRK11906 transcriptional regul 97.6 0.0015 3.2E-08 79.4 17.5 102 1674-1779 319-421 (458)
305 COG0457 NrfG FOG: TPR repeat [ 97.6 0.054 1.2E-06 60.8 30.1 215 1535-1757 40-264 (291)
306 PF13414 TPR_11: TPR repeat; P 97.6 0.00017 3.8E-09 65.8 7.4 66 1659-1726 2-69 (69)
307 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0012 2.6E-08 80.9 16.8 123 1593-1721 171-294 (395)
308 KOG2053 Mitochondrial inherita 97.6 0.021 4.6E-07 73.4 27.6 252 1534-1798 25-302 (932)
309 CHL00033 ycf3 photosystem I as 97.6 0.0013 2.8E-08 72.0 15.4 95 1610-1706 16-117 (168)
310 PF12895 Apc3: Anaphase-promot 97.6 0.00017 3.7E-09 68.8 7.3 81 1674-1755 4-84 (84)
311 KOG1067 Predicted RNA-binding 97.6 6.4E-05 1.4E-09 89.8 4.9 77 448-524 665-741 (760)
312 PF14938 SNAP: Soluble NSF att 97.6 0.0019 4E-08 77.2 17.6 201 1553-1757 36-265 (282)
313 PF14559 TPR_19: Tetratricopep 97.6 0.00023 4.9E-09 64.8 7.4 63 1706-1771 2-64 (68)
314 PRK12327 nusA transcription el 97.6 0.00011 2.4E-09 88.3 6.7 106 408-521 86-199 (362)
315 COG1095 RPB7 DNA-directed RNA 97.6 0.00021 4.5E-09 75.6 7.9 74 1244-1318 81-170 (183)
316 KOG0550 Molecular chaperone (D 97.5 0.0039 8.5E-08 73.4 18.6 167 1532-1700 183-362 (486)
317 PF13432 TPR_16: Tetratricopep 97.5 0.00033 7.1E-09 63.2 8.0 61 1666-1728 3-64 (65)
318 KOG0543 FKBP-type peptidyl-pro 97.5 0.0012 2.6E-08 78.3 14.5 139 1597-1757 214-354 (397)
319 PHA02858 EIF2a-like PKR inhibi 97.5 0.00026 5.6E-09 64.1 6.8 72 1331-1404 13-85 (86)
320 PRK02603 photosystem I assembl 97.5 0.0016 3.5E-08 71.6 14.8 114 1683-1799 23-146 (172)
321 COG0457 NrfG FOG: TPR repeat [ 97.5 0.082 1.8E-06 59.4 29.6 223 1565-1795 36-265 (291)
322 PRK10153 DNA-binding transcrip 97.5 0.0071 1.5E-07 77.6 22.1 156 1538-1729 323-487 (517)
323 PF14559 TPR_19: Tetratricopep 97.5 0.00038 8.3E-09 63.3 7.5 62 1674-1737 6-67 (68)
324 PRK11642 exoribonuclease R; Pr 97.4 0.00039 8.5E-09 93.0 10.0 73 1243-1315 642-726 (813)
325 KOG3785 Uncharacterized conser 97.4 0.009 2E-07 68.5 19.1 251 1529-1796 33-346 (557)
326 TIGR00358 3_prime_RNase VacB a 97.4 0.0004 8.7E-09 91.8 10.0 71 1243-1313 571-653 (654)
327 PRK08563 DNA-directed RNA poly 97.4 0.0006 1.3E-08 75.8 9.7 75 1243-1318 80-170 (187)
328 PF13525 YfiO: Outer membrane 97.4 0.014 2.9E-07 66.1 20.7 156 1628-1785 7-197 (203)
329 KOG0543 FKBP-type peptidyl-pro 97.4 0.0031 6.7E-08 74.9 15.4 141 1559-1726 215-357 (397)
330 PRK12327 nusA transcription el 97.4 0.00022 4.9E-09 85.7 6.0 122 581-716 84-211 (362)
331 cd04462 S1_RNAPII_Rpb7 S1_RNAP 97.4 0.0011 2.3E-08 63.5 9.4 64 1334-1399 1-75 (88)
332 PF12895 Apc3: Anaphase-promot 97.3 0.00063 1.4E-08 64.9 7.9 80 1639-1721 2-84 (84)
333 PF04733 Coatomer_E: Coatomer 97.3 0.003 6.5E-08 75.1 15.1 145 1617-1765 119-270 (290)
334 cd05701 S1_Rrp5_repeat_hs10 S1 97.3 0.00021 4.6E-09 60.5 3.8 59 837-895 1-60 (69)
335 PF12688 TPR_5: Tetratrico pep 97.3 0.0059 1.3E-07 62.1 14.9 97 1661-1757 2-103 (120)
336 cd05700 S1_Rrp5_repeat_hs9 S1_ 97.3 0.0014 3.1E-08 54.9 8.3 64 741-804 1-65 (65)
337 KOG3785 Uncharacterized conser 97.3 0.0054 1.2E-07 70.3 15.2 162 1563-1733 33-223 (557)
338 PF08311 Mad3_BUB1_I: Mad3/BUB 97.3 0.0025 5.5E-08 65.6 11.6 111 1676-1793 2-126 (126)
339 COG4700 Uncharacterized protei 97.2 0.041 8.9E-07 58.3 19.3 122 1659-1785 88-212 (251)
340 PRK10866 outer membrane biogen 97.2 0.051 1.1E-06 63.1 22.8 161 1627-1790 33-236 (243)
341 COG4105 ComL DNA uptake lipopr 97.2 0.058 1.3E-06 61.1 21.9 184 1551-1757 33-231 (254)
342 KOG1585 Protein required for f 97.1 0.032 6.9E-07 61.6 18.7 194 1560-1790 39-251 (308)
343 KOG4234 TPR repeat-containing 97.1 0.01 2.2E-07 63.3 13.8 103 1559-1663 102-205 (271)
344 PF13428 TPR_14: Tetratricopep 97.0 0.0012 2.6E-08 54.3 5.3 42 1696-1737 2-43 (44)
345 PF13371 TPR_9: Tetratricopept 97.0 0.0029 6.3E-08 58.4 8.5 54 1704-1757 4-57 (73)
346 COG1096 Predicted RNA-binding 97.0 0.005 1.1E-07 65.3 11.0 76 1329-1407 59-143 (188)
347 PF13371 TPR_9: Tetratricopept 97.0 0.0025 5.3E-08 58.9 7.9 68 1667-1736 2-70 (73)
348 PHA02858 EIF2a-like PKR inhibi 97.0 0.0017 3.7E-08 59.0 6.3 69 1243-1313 15-85 (86)
349 cd04462 S1_RNAPII_Rpb7 S1_RNAP 97.0 0.0035 7.6E-08 60.0 8.8 62 1244-1306 1-73 (88)
350 PRK05054 exoribonuclease II; P 97.0 0.0021 4.6E-08 84.6 9.6 72 1333-1404 558-643 (644)
351 PF08311 Mad3_BUB1_I: Mad3/BUB 96.9 0.011 2.3E-07 61.1 12.0 105 1646-1756 5-126 (126)
352 COG1729 Uncharacterized protei 96.9 0.012 2.6E-07 67.1 13.2 95 1637-1731 152-251 (262)
353 PF13512 TPR_18: Tetratricopep 96.8 0.018 3.9E-07 59.6 13.2 73 1659-1731 9-83 (142)
354 PF10447 EXOSC1: Exosome compo 96.8 0.0033 7.1E-08 58.7 7.0 61 1333-1393 3-82 (82)
355 PRK15331 chaperone protein Sic 96.8 0.049 1.1E-06 57.7 16.4 95 1633-1730 44-139 (165)
356 PF12688 TPR_5: Tetratrico pep 96.8 0.021 4.6E-07 58.1 13.2 91 1594-1686 4-102 (120)
357 COG1107 Archaea-specific RecJ- 96.8 0.0065 1.4E-07 74.0 10.7 158 620-804 115-282 (715)
358 KOG3081 Vesicle coat complex C 96.7 0.11 2.3E-06 58.7 19.0 173 1542-1728 97-275 (299)
359 KOG4648 Uncharacterized conser 96.7 0.0051 1.1E-07 70.2 8.8 106 1632-1739 103-209 (536)
360 PRK15331 chaperone protein Sic 96.7 0.024 5.1E-07 60.1 12.9 95 1661-1757 38-133 (165)
361 PTZ00162 DNA-directed RNA poly 96.7 0.0077 1.7E-07 65.6 9.7 79 1331-1411 78-170 (176)
362 COG4785 NlpI Lipoprotein NlpI, 96.7 0.065 1.4E-06 58.2 16.0 123 1590-1717 64-188 (297)
363 KOG2916 Translation initiation 96.6 0.0014 3.1E-08 71.9 3.3 76 1332-1407 14-90 (304)
364 PF13512 TPR_18: Tetratricopep 96.6 0.045 9.7E-07 56.8 13.9 102 1628-1729 12-133 (142)
365 COG3898 Uncharacterized membra 96.6 0.65 1.4E-05 54.9 24.6 218 1532-1757 168-391 (531)
366 PRK12328 nusA transcription el 96.6 0.0039 8.5E-08 74.4 6.8 122 581-716 88-217 (374)
367 COG1097 RRP4 RNA-binding prote 96.5 0.014 3E-07 64.8 10.0 72 1243-1315 63-138 (239)
368 KOG4555 TPR repeat-containing 96.5 0.046 1E-06 54.5 12.4 90 1636-1725 53-145 (175)
369 KOG3081 Vesicle coat complex C 96.4 0.19 4.1E-06 56.7 18.0 147 1609-1765 124-276 (299)
370 KOG2053 Mitochondrial inherita 96.4 0.91 2E-05 59.2 26.2 221 1563-1793 20-253 (932)
371 PF13428 TPR_14: Tetratricopep 96.4 0.0088 1.9E-07 49.2 5.9 42 1627-1668 2-43 (44)
372 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.023 5.1E-07 69.3 11.9 69 1656-1724 71-141 (453)
373 cd05790 S1_Rrp40 S1_Rrp40: Rrp 96.3 0.021 4.5E-07 54.0 8.8 72 1243-1316 5-76 (86)
374 COG1097 RRP4 RNA-binding prote 96.3 0.064 1.4E-06 59.7 13.8 103 408-522 29-138 (239)
375 KOG1856 Transcription elongati 96.2 0.0042 9.1E-08 81.0 4.9 78 624-701 982-1062(1299)
376 KOG4340 Uncharacterized conser 96.2 0.16 3.4E-06 57.5 16.2 69 1689-1757 138-206 (459)
377 COG1107 Archaea-specific RecJ- 96.2 0.0064 1.4E-07 74.1 5.7 72 1328-1406 116-187 (715)
378 cd05790 S1_Rrp40 S1_Rrp40: Rrp 96.1 0.024 5.3E-07 53.5 8.3 73 1332-1407 4-76 (86)
379 PF13509 S1_2: S1 domain; PDB: 96.1 0.02 4.3E-07 50.8 7.3 61 451-521 1-61 (61)
380 COG0557 VacB Exoribonuclease R 96.1 0.012 2.5E-07 79.0 8.5 77 1329-1405 617-704 (706)
381 COG1729 Uncharacterized protei 96.1 0.053 1.1E-06 62.0 12.4 94 1670-1765 151-249 (262)
382 KOG4555 TPR repeat-containing 96.1 0.06 1.3E-06 53.7 11.0 90 1666-1757 49-143 (175)
383 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.077 1.7E-06 64.9 14.5 62 1627-1688 76-141 (453)
384 TIGR02062 RNase_B exoribonucle 96.1 0.012 2.7E-07 77.3 8.4 71 1333-1403 554-638 (639)
385 PF06552 TOM20_plant: Plant sp 96.1 0.042 9.1E-07 58.7 10.6 92 1642-1735 7-120 (186)
386 KOG2471 TPR repeat-containing 96.0 0.47 1E-05 57.4 20.0 121 1550-1672 238-381 (696)
387 KOG1586 Protein required for f 96.0 0.79 1.7E-05 50.8 20.0 130 1627-1757 75-223 (288)
388 smart00386 HAT HAT (Half-A-TPR 96.0 0.0095 2.1E-07 45.1 4.2 32 1709-1740 1-32 (33)
389 KOG1464 COP9 signalosome, subu 96.0 0.36 7.8E-06 54.0 17.6 205 1534-1743 43-286 (440)
390 TIGR00757 RNaseEG ribonuclease 96.0 0.015 3.2E-07 72.1 7.9 73 1331-1404 22-108 (414)
391 PTZ00162 DNA-directed RNA poly 96.0 0.027 5.8E-07 61.5 9.0 73 627-700 81-167 (176)
392 COG4785 NlpI Lipoprotein NlpI, 96.0 0.27 5.9E-06 53.5 16.0 154 1631-1797 70-227 (297)
393 PF13509 S1_2: S1 domain; PDB: 96.0 0.026 5.6E-07 50.1 7.1 61 535-608 1-61 (61)
394 KOG1856 Transcription elongati 95.9 0.0072 1.6E-07 79.0 5.1 80 1240-1319 981-1063(1299)
395 smart00777 Mad3_BUB1_I Mad3/BU 95.9 0.097 2.1E-06 53.4 12.2 106 1679-1791 5-124 (125)
396 KOG4234 TPR repeat-containing 95.9 0.061 1.3E-06 57.7 10.9 93 1598-1692 102-201 (271)
397 PRK05054 exoribonuclease II; P 95.9 0.019 4.2E-07 75.7 9.2 71 626-696 558-643 (644)
398 COG4105 ComL DNA uptake lipopr 95.9 1.4 2.9E-05 50.4 22.1 157 1627-1786 35-224 (254)
399 PF13431 TPR_17: Tetratricopep 95.8 0.01 2.2E-07 45.8 3.6 33 1541-1573 2-34 (34)
400 KOG1941 Acetylcholine receptor 95.8 0.71 1.5E-05 54.0 19.4 161 1591-1757 80-274 (518)
401 PF08631 SPO22: Meiosis protei 95.7 4.3 9.4E-05 48.3 27.2 228 1563-1794 4-274 (278)
402 KOG1941 Acetylcholine receptor 95.7 0.94 2E-05 53.0 19.9 242 1555-1798 86-363 (518)
403 PRK12328 nusA transcription el 95.7 0.034 7.3E-07 66.7 8.9 107 408-522 90-206 (374)
404 KOG2916 Translation initiation 95.7 0.013 2.8E-07 64.7 4.8 75 627-701 16-92 (304)
405 PF10447 EXOSC1: Exosome compo 95.6 0.03 6.4E-07 52.4 6.4 60 1243-1302 3-82 (82)
406 TIGR00757 RNaseEG ribonuclease 95.6 0.025 5.4E-07 70.1 7.6 60 1242-1301 23-96 (414)
407 PF02259 FAT: FAT domain; Int 95.4 1.9 4.2E-05 53.1 23.8 119 1657-1778 143-304 (352)
408 COG1096 Predicted RNA-binding 95.4 0.12 2.7E-06 55.1 10.8 105 407-522 25-142 (188)
409 PF04184 ST7: ST7 protein; In 95.3 1.1 2.3E-05 55.3 19.5 173 1609-1795 184-375 (539)
410 PF13424 TPR_12: Tetratricopep 95.1 0.049 1.1E-06 51.0 6.4 62 1696-1757 6-74 (78)
411 TIGR02062 RNase_B exoribonucle 94.9 0.061 1.3E-06 71.0 8.7 68 628-695 558-638 (639)
412 PF03704 BTAD: Bacterial trans 94.9 0.37 8E-06 51.2 13.2 104 1635-1757 15-124 (146)
413 KOG2041 WD40 repeat protein [G 94.9 1.2 2.5E-05 56.0 18.2 185 1545-1754 686-877 (1189)
414 smart00777 Mad3_BUB1_I Mad3/BU 94.8 0.37 8.1E-06 49.2 12.1 41 1679-1719 83-123 (125)
415 COG3118 Thioredoxin domain-con 94.8 1.2 2.6E-05 51.6 17.3 146 1633-1784 141-290 (304)
416 PF02259 FAT: FAT domain; Int 94.8 1.9 4.2E-05 53.1 21.4 191 1548-1742 67-305 (352)
417 KOG1586 Protein required for f 94.8 1.6 3.4E-05 48.6 17.2 123 1608-1730 88-230 (288)
418 KOG1585 Protein required for f 94.7 5 0.00011 45.1 20.9 204 1532-1752 25-250 (308)
419 PF13431 TPR_17: Tetratricopep 94.7 0.034 7.3E-07 42.9 3.3 32 1718-1749 2-33 (34)
420 KOG3616 Selective LIM binding 94.7 3.3 7.2E-05 52.2 21.5 38 1760-1797 876-913 (1636)
421 COG3118 Thioredoxin domain-con 94.6 1.4 3E-05 51.0 17.3 121 1529-1656 145-266 (304)
422 PF02184 HAT: HAT (Half-A-TPR) 94.6 0.033 7.2E-07 41.5 2.8 28 1745-1776 3-30 (32)
423 KOG2796 Uncharacterized conser 94.5 1.2 2.7E-05 50.0 15.8 147 1535-1693 166-320 (366)
424 KOG1464 COP9 signalosome, subu 94.5 0.98 2.1E-05 50.7 15.0 151 1608-1758 42-220 (440)
425 PF10300 DUF3808: Protein of u 94.5 0.96 2.1E-05 57.9 17.5 119 1674-1798 248-379 (468)
426 PRK12329 nusA transcription el 94.4 0.12 2.6E-06 63.0 8.7 70 1124-1213 151-226 (449)
427 KOG3616 Selective LIM binding 94.4 3.6 7.7E-05 51.9 21.0 151 1627-1789 662-847 (1636)
428 PF04184 ST7: ST7 protein; In 94.4 2.2 4.7E-05 52.8 19.1 100 1665-1766 264-381 (539)
429 PF02184 HAT: HAT (Half-A-TPR) 94.4 0.059 1.3E-06 40.2 3.7 30 1710-1740 2-31 (32)
430 PF06552 TOM20_plant: Plant sp 94.4 0.33 7.2E-06 52.1 10.8 96 1674-1775 6-122 (186)
431 PF10300 DUF3808: Protein of u 94.2 1.4 3.1E-05 56.4 18.2 149 1608-1757 203-375 (468)
432 COG0557 VacB Exoribonuclease R 94.1 0.13 2.8E-06 69.2 9.0 74 1241-1314 619-704 (706)
433 PF13424 TPR_12: Tetratricopep 94.1 0.13 2.8E-06 48.1 6.5 73 1726-1798 2-78 (78)
434 KOG2796 Uncharacterized conser 94.1 5.5 0.00012 45.1 19.6 130 1628-1757 179-314 (366)
435 PRK12329 nusA transcription el 94.1 0.17 3.7E-06 61.7 8.9 107 408-521 102-224 (449)
436 KOG4648 Uncharacterized conser 94.0 0.18 3.9E-06 58.1 8.5 106 1665-1775 102-208 (536)
437 KOG4340 Uncharacterized conser 93.8 0.53 1.2E-05 53.5 11.4 169 1610-1787 27-199 (459)
438 PF13281 DUF4071: Domain of un 93.5 4.6 9.9E-05 49.4 19.6 103 1551-1656 140-256 (374)
439 KOG2610 Uncharacterized conser 93.4 2.2 4.8E-05 49.6 15.6 155 1532-1691 117-280 (491)
440 smart00386 HAT HAT (Half-A-TPR 93.4 0.13 2.9E-06 38.7 4.3 31 1641-1671 2-32 (33)
441 PF07719 TPR_2: Tetratricopept 93.2 0.21 4.5E-06 38.1 5.2 33 1696-1728 2-34 (34)
442 PF03704 BTAD: Bacterial trans 92.6 2.1 4.6E-05 45.4 13.9 111 1674-1801 21-131 (146)
443 PF13281 DUF4071: Domain of un 92.4 13 0.00029 45.5 21.4 147 1609-1758 157-334 (374)
444 KOG0545 Aryl-hydrocarbon recep 92.2 3.3 7.1E-05 46.4 14.3 67 1627-1693 231-298 (329)
445 KOG0985 Vesicle coat protein c 91.9 12 0.00027 49.6 20.7 77 1564-1656 1087-1163(1666)
446 KOG3824 Huntingtin interacting 91.7 0.87 1.9E-05 52.0 9.5 61 1706-1768 127-187 (472)
447 KOG4642 Chaperone-dependent E3 91.5 1.3 2.7E-05 49.5 10.3 98 1639-1738 23-126 (284)
448 KOG0890 Protein kinase of the 91.5 26 0.00056 51.4 25.0 229 1551-1786 1628-1911(2382)
449 PRK10811 rne ribonuclease E; R 91.5 0.41 8.9E-06 63.2 7.6 70 1243-1312 37-117 (1068)
450 PF04910 Tcf25: Transcriptiona 91.4 4 8.6E-05 50.3 15.9 172 1540-1728 28-226 (360)
451 KOG0985 Vesicle coat protein c 91.2 20 0.00043 47.8 21.5 63 1549-1623 1101-1163(1666)
452 PRK10811 rne ribonuclease E; R 91.0 0.45 9.7E-06 62.8 7.3 69 1333-1402 37-116 (1068)
453 PF07719 TPR_2: Tetratricopept 90.5 0.59 1.3E-05 35.6 5.0 31 1661-1691 2-33 (34)
454 KOG0530 Protein farnesyltransf 90.5 6.8 0.00015 44.6 14.7 188 1582-1778 36-233 (318)
455 PF00515 TPR_1: Tetratricopept 90.4 0.54 1.2E-05 36.0 4.6 32 1696-1727 2-33 (34)
456 PF13174 TPR_6: Tetratricopept 90.3 0.45 9.8E-06 35.9 4.1 32 1697-1728 2-33 (33)
457 PF10345 Cohesin_load: Cohesin 90.0 21 0.00046 47.7 22.1 181 1570-1753 39-249 (608)
458 KOG2471 TPR repeat-containing 89.5 4.1 8.8E-05 49.8 12.9 148 1627-1777 207-380 (696)
459 COG2909 MalT ATP-dependent tra 89.4 61 0.0013 43.4 24.2 236 1551-1791 414-684 (894)
460 KOG1130 Predicted G-alpha GTPa 89.3 23 0.00049 42.7 18.4 261 1531-1796 30-345 (639)
461 KOG2610 Uncharacterized conser 89.1 21 0.00046 41.9 17.6 48 1639-1686 116-164 (491)
462 PF00515 TPR_1: Tetratricopept 89.1 0.73 1.6E-05 35.2 4.5 31 1661-1691 2-33 (34)
463 PF08631 SPO22: Meiosis protei 89.0 57 0.0012 38.8 24.1 204 1552-1757 35-274 (278)
464 COG2909 MalT ATP-dependent tra 89.0 88 0.0019 42.0 25.2 181 1551-1744 346-552 (894)
465 PF11207 DUF2989: Protein of u 88.9 16 0.00035 40.5 16.0 98 1612-1714 97-197 (203)
466 KOG4642 Chaperone-dependent E3 88.6 3.1 6.8E-05 46.5 10.4 100 1674-1775 25-126 (284)
467 PF10602 RPN7: 26S proteasome 88.6 7.1 0.00015 43.0 13.5 100 1627-1726 37-144 (177)
468 COG1747 Uncharacterized N-term 88.5 52 0.0011 41.1 21.0 145 1610-1757 83-233 (711)
469 PRK11712 ribonuclease G; Provi 88.3 0.93 2E-05 57.5 7.1 73 1331-1404 35-121 (489)
470 KOG1130 Predicted G-alpha GTPa 88.2 7.9 0.00017 46.4 13.8 131 1608-1738 32-191 (639)
471 KOG2300 Uncharacterized conser 87.9 81 0.0017 39.3 24.5 223 1564-1791 287-552 (629)
472 KOG3298 DNA-directed RNA polym 87.8 2.9 6.3E-05 43.6 8.9 66 1333-1400 80-156 (170)
473 KOG0545 Aryl-hydrocarbon recep 87.5 9.6 0.00021 42.9 13.2 68 1696-1765 231-298 (329)
474 KOG1538 Uncharacterized conser 87.5 6 0.00013 49.7 12.8 49 1703-1755 781-830 (1081)
475 PF10246 MRP-S35: Mitochondria 87.4 2.3 5E-05 41.0 7.3 60 355-422 15-74 (104)
476 PF13174 TPR_6: Tetratricopept 87.3 1 2.2E-05 33.9 4.3 32 1628-1659 2-33 (33)
477 PRK11712 ribonuclease G; Provi 87.2 1.2 2.7E-05 56.4 7.3 59 1243-1301 37-109 (489)
478 KOG2422 Uncharacterized conser 87.0 10 0.00023 47.6 14.5 97 1696-1795 343-448 (665)
479 PF08292 RNA_pol_Rbc25: RNA po 86.8 2.2 4.8E-05 43.6 7.5 60 1244-1303 3-75 (122)
480 KOG3409 Exosomal 3'-5' exoribo 86.6 1.6 3.4E-05 45.9 6.2 68 363-430 67-145 (193)
481 KOG3298 DNA-directed RNA polym 86.5 3.7 8.1E-05 42.9 8.8 59 1244-1303 81-150 (170)
482 KOG1308 Hsp70-interacting prot 86.1 1.3 2.8E-05 52.0 6.0 125 1523-1654 119-243 (377)
483 PF10246 MRP-S35: Mitochondria 85.5 2.5 5.3E-05 40.8 6.4 54 835-895 22-75 (104)
484 PF10602 RPN7: 26S proteasome 85.4 5.6 0.00012 43.8 10.4 100 1553-1656 37-143 (177)
485 PF13181 TPR_8: Tetratricopept 85.4 1.5 3.3E-05 33.4 4.3 31 1696-1726 2-32 (34)
486 PF08292 RNA_pol_Rbc25: RNA po 85.2 3.2 6.9E-05 42.4 7.7 59 364-422 3-74 (122)
487 PF04910 Tcf25: Transcriptiona 85.2 21 0.00045 44.2 16.3 167 1621-1795 34-222 (360)
488 KOG1920 IkappaB kinase complex 85.1 39 0.00085 46.3 19.2 75 1608-1685 888-965 (1265)
489 KOG2300 Uncharacterized conser 85.0 33 0.00072 42.4 16.9 111 1609-1719 25-151 (629)
490 PF10345 Cohesin_load: Cohesin 84.9 1.5E+02 0.0033 39.6 27.1 188 1610-1798 38-257 (608)
491 KOG0376 Serine-threonine phosp 84.7 1.4 3E-05 54.1 5.7 116 1635-1757 13-129 (476)
492 KOG0890 Protein kinase of the 84.7 1E+02 0.0022 45.8 23.9 97 1660-1758 1629-1731(2382)
493 PRK12442 translation initiatio 84.1 4.4 9.5E-05 38.1 7.3 65 1337-1406 8-73 (87)
494 KOG3409 Exosomal 3'-5' exoribo 83.5 5.2 0.00011 42.2 8.3 73 1027-1100 66-146 (193)
495 KOG1538 Uncharacterized conser 83.3 18 0.00038 45.8 14.0 212 1552-1793 585-831 (1081)
496 COG3629 DnrI DNA-binding trans 83.0 12 0.00025 44.1 12.0 81 1695-1775 153-236 (280)
497 COG4976 Predicted methyltransf 82.9 1.4 3.1E-05 48.7 4.3 55 1703-1757 3-57 (287)
498 COG2976 Uncharacterized protei 82.7 44 0.00096 36.8 15.2 150 1554-1729 35-193 (207)
499 cd05701 S1_Rrp5_repeat_hs10 S1 82.6 1.1 2.3E-05 39.0 2.5 57 1031-1089 2-59 (69)
500 KOG1308 Hsp70-interacting prot 82.5 1.2 2.5E-05 52.4 3.6 118 1636-1757 124-243 (377)
No 1
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=100.00 E-value=8e-181 Score=1665.33 Aligned_cols=1588 Identities=37% Similarity=0.550 Sum_probs=1288.4
Q ss_pred CeEEEEEeEEccccEEEEcCCCcEEEEeccccCchh--hccccccccCC-----CCCcccccCcEEEEEEEEeecccccc
Q 000242 1 MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI--LDNEIEANEDN-----LLPTIFHVGQLVSCIVLQLDDDKKEI 73 (1801)
Q Consensus 1 m~~lg~v~~i~~~~l~vslp~~l~g~v~~~~is~~~--~~~~~~~~~~~-----~l~~~f~~Gq~v~~~V~~~~~~~~~~ 73 (1801)
|..+|||+++.+.... +| ..++...+.+ +..+..+++.+ -....|.||+.|+|.|.++....-
T Consensus 63 l~~~~~vke~~~~~~~--~~------k~vk~~~s~~s~~~~~~~~~~k~~~~~~~~~k~isPG~~llgvIs~i~~~Dl-- 132 (1710)
T KOG1070|consen 63 LTGFGVVKEVFDDGRP--KK------KTVKKSASKVSKKFTENFNEEKPEIINAFQLKNISPGMLLLGVISKINGNDL-- 132 (1710)
T ss_pred hhcccceecccCCCCc--cc------cccccchhhHHHhhhccccccchhhhhhccccccCCcceeeeeeeeccccce--
Confidence 5678999999998877 55 4444443432 11111122222 345789999999999999875542
Q ss_pred CeeEEEEEechhhhccCCCcccccCCcEEEEEEeeeeceeEEEEecCCcceeeccCCCcCcCCCCccCCCcEEEEEEEEE
Q 000242 74 GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSI 153 (1801)
Q Consensus 74 ~~~~i~Ls~~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~g~~~~~gfl~~~~~~~~~~~~~~~G~~~~~~v~~~ 153 (1801)
+.++..+|+|-.+|.+|+.+.+.+||.|.+.|.|+||||+++|+|++..+||+.+.+++.. +..|++||+++|+|+++
T Consensus 133 -~isv~~~l~g~v~~t~lS~~~~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~~q~pn~-~~~lKvGq~l~~~V~k~ 210 (1710)
T KOG1070|consen 133 -KISVKGGLNGYVLNTHLSDEMLAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEKSQFPNL-GAKLKVGQWLRVSVTKS 210 (1710)
T ss_pred -eEEccCcccccccccccCHhHhhhhhhhccccccccccccchhcCCccccchhhhccCchh-hhhcccCceEEEEEEec
Confidence 5689999999999999999999999999999999999999999999999999999887532 34799999999999998
Q ss_pred cCCCcEEEEccCccccccccccccccccccccCCCceEEEEEEEEecCeEEEEeCCceEEEEeccccCCCCCCCCccccC
Q 000242 154 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 233 (1801)
Q Consensus 154 ~~~~~~v~ls~~~~~~~~~~~~~~~~~~~~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~g~v~~~~l~~~~~~~~~~~~~ 233 (1801)
+. +.+.+|..+..+.+..+++.++++++.|+||++|+|.|++|+++|+.++|+++|+|+++..||++++ .|
T Consensus 211 ~s--~~v~ks~~~~~~~t~~~t~~~~~~~~~LvpGt~vqa~V~sv~~~Gi~~dil~~ftG~l~~~hl~~~~-------~~ 281 (1710)
T KOG1070|consen 211 TS--ERVVKSTKFVEVLTLNPTSCNGLALNDLVPGTMVQAEVQSVEDHGITLDILNGFTGFLDKKHLPPFL-------RY 281 (1710)
T ss_pred cC--ceEEecccceeeecccchhccccchhhcCCcceEEEEecceecCcEEEEecccccceeehhhCCchh-------hc
Confidence 76 3888999999888888888889999999999999999999999999999999999999999998764 48
Q ss_pred CCCCEEEEEEEEEeCCCCeEEEeeCchhccCCCCCCCCCCCCeEEeeEEEEEeCCceEEEEeCCCCCceeeEEeecccch
Q 000242 234 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 313 (1801)
Q Consensus 234 ~~G~~v~arVl~~~~~~~~v~lSl~~~~~~~~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~~~~~~~~v~gfv~~s~~~~ 313 (1801)
..|+...|.|+. +..+ ...++.++.+..+.+... |+..-+ |-+.+.
T Consensus 282 ~~~~~~l~~vi~--~s~R-------------------v~~~~f~~ka~ki~~l~~-~v~ai~-----------p~~~~~- 327 (1710)
T KOG1070|consen 282 FENQEKLGKVIH--KSDR-------------------VFVVDFFDKASKILVLKA-GVDAIA-----------PSRIEK- 327 (1710)
T ss_pred cccHHHhhcccc--hhhh-------------------eeeechhhccceEEEecC-ccceEc-----------cCCccc-
Confidence 888888888643 2111 222334443433334443 444333 322211
Q ss_pred HHHHhhhccccCCCEEEEEEEEEeecCCeEEEEeeccccccccccccCCCCCCEEEEEEEEEecCceEEEeCCCeEEecc
Q 000242 314 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 393 (1801)
Q Consensus 314 ~~~~~~~~~~~vG~~~~~rV~~~~~~~~~~~~s~k~~~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp 393 (1801)
+-.. ..+++|..++|||+++..++.++..+++.+.++.++..+.++.||.++.+.+ .+.++ ..|++|
T Consensus 328 --~~~~-e~~k~G~~~K~~vi~~~~~~~~~~~tl~~s~ie~k~~~~s~V~~r~l~~~~~-svdt~---------~~~l~~ 394 (1710)
T KOG1070|consen 328 --VLSF-EIFKIGNKVKCRVIDVLQMDSLALFTLKESAIEGKFSLVSDVSPRGLLKKPV-SVDTE---------EVGLSP 394 (1710)
T ss_pred --ccch-hhcccCceEEEEEEEEeeccceEEeecchhhccCceEEEeccCCceEEEecc-cCChh---------hhhccc
Confidence 1111 2489999999999999999999999999999999999999999999999998 76664 678999
Q ss_pred CCCCCcccccCCCCCcccCCEEEEEEEEEeCCeEEEEEccccccchhhhhhhhhhcCCCcEEEEEEEEEeeceEEEEEcC
Q 000242 394 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 473 (1801)
Q Consensus 394 ~~hls~~~~~~~~~~~~vG~~v~~rVl~v~~~~i~ls~k~~l~~~~~~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~ 473 (1801)
+.|+..++..+|+.+|..|..|.+|||.+..+++.+|+| .+..+++|.+..|.++.+ ..+|.+.++.
T Consensus 395 L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~-v~~~sK~pvis~y~~~~~--~t~~~l~~v~---------- 461 (1710)
T KOG1070|consen 395 LPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLK-VLCVSKLPVISMYADAVK--LTHGMLSKVP---------- 461 (1710)
T ss_pred cchhhceeecCCCcccccccceeeEEeeccceeeeeeee-eeEeecCcceEEEeeccc--cCcchhhccc----------
Confidence 999999999999999999999999999998899999999 999999999999988766 6777777665
Q ss_pred CeEEEecccccCCCCCCCCCCCccCCCEEEEEEEEEeCCCCeEEEEEeeCCC--CCcccccccCCCeEEEEEEEEecCcE
Q 000242 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAV 551 (1801)
Q Consensus 474 ~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~~--~~~~~~~~~~G~iv~g~V~~v~~~g~ 551 (1801)
.|++|+ |++|..+.+|+.+|-+.++-+.+|++++.. ......++++|++|+|+|.++++.|+
T Consensus 462 --q~~v~~--------------~e~~te~~~rv~~v~~v~~v~~v~~~~svl~lk~~~~nDI~iG~~V~~~I~~vt~~Gv 525 (1710)
T KOG1070|consen 462 --QGMVPI--------------YEVGTEVKSRVWQVFYVGKVVIVSVRESVLGLKFLRVNDIEIGQLVPGVIRKVTPQGV 525 (1710)
T ss_pred --cCCCCc--------------eecCCcccCccceecccCcEEEEEEehHhhcccccccccccccceeeeEEEEecCCcE
Confidence 566665 555566666666666666666666654422 33455679999999999999999999
Q ss_pred EEEEEEcCceeEEEecccccCcccccccccccccCCCeEeeEEEeecCCCeEEEeccchhhchhhcCCCccccCCCCCEE
Q 000242 552 VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 631 (1801)
Q Consensus 552 ~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~i~~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~ 631 (1801)
.|.+. .+++.|+||..||+|++.+.+.+..++..|.++ |+|.++.+.+++.|++|++|++...++|.+|+++.+|+++
T Consensus 526 ~v~v~-~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~-RVl~~~~~~~~v~l~~K~slv~~~~plp~d~~~~~pg~~~ 603 (1710)
T KOG1070|consen 526 EVLVT-FGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKL-RVLSVNRDRNRVALTLKKSLVNTQLPLPSDFEQAIPGKIT 603 (1710)
T ss_pred EEEEe-cCceeeecChHhhhhcccccccceeeeccccEE-EEEEEEccCCeeEEEechhhhcccCCCccchhhcCCCceE
Confidence 99995 366999999999999999999998888888888 8999999999999999999999988999999999999999
Q ss_pred EEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccCCCChhhHHH
Q 000242 632 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 711 (1801)
Q Consensus 632 ~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~~~~~~~~~~~ 711 (1801)
.|++.++.++||||+|+||++||+|.+++++.|+.+++++|.+||||.++|+++|++++||.++++.+.|+.++..+..
T Consensus 604 ~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~l~~r~s~~~~a~~~~~~- 682 (1710)
T KOG1070|consen 604 KGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRMPLGLRASSCARACVKRSV- 682 (1710)
T ss_pred EEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhceeehhhhhhhhHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988443322222
Q ss_pred HHhHHHHHHHhhcccCCCcccccccccccccEEEEEEEEeecceeEEEecccCceeeEEeeeecCCc-------------
Q 000242 712 HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA------------- 778 (1801)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~g~~v~~~~~~~~~g~i~~~~ls~~------------- 778 (1801)
+.+..|.+..+.+.+++.+.++|++.+. ++.|++...||.|+
T Consensus 683 ------------------------e~~~~g~v~s~~~~~~tkd~viVei~~~-~~~~v~~~~~L~dg~v~~~~~~~~kl~ 737 (1710)
T KOG1070|consen 683 ------------------------ENFVKGGVKSLKSIDKTKDSVIVEIVDQ-GITGVGVFGELVDGSVVVNKVLENKLR 737 (1710)
T ss_pred ------------------------HHhhccccccceeehhccccEEEEccCc-ceEEEEEEEEEccCceEEccchhhhhh
Confidence 3455677777888888888888888875 78888888888863
Q ss_pred ------ccccCCeEEEEEEEeecccceEEEeehhhhHhhhhhcchhhHHhHhhhhhccccccCCcceEEEEEEEEeceeE
Q 000242 779 ------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYL 852 (1801)
Q Consensus 779 ------~~~~G~~v~~~vl~~~~~~~~v~ls~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~v 852 (1801)
.+.+|+.+.++|++++..++.|.+++++.|...+ .+|..|....|+|+++..++.
T Consensus 738 ~~t~~~~lv~gq~~~~~i~~isl~k~lv~~s~~~~L~~~~-------------------~~l~k~~~~~~~v~~is~~~~ 798 (1710)
T KOG1070|consen 738 KNTSLLHLVVGQVTVGVILSISLKKSLVLISLCTDLPNNA-------------------TKLLKGSYALALVRSISKEGK 798 (1710)
T ss_pred hcchhheeeecceeEEEEEEeehhhhhhhccccccccchH-------------------HHHhcCchhHHHHHhhhhhee
Confidence 3688999999999999988888888888776542 347788889999999999999
Q ss_pred EEeecCCcceEEEEeeecCC-CCCCCcccccCCCeEEEEEeecCCCCcccceeheehh-----------cc--ccccccc
Q 000242 853 VLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA-----------IS--ETETSSS 918 (1801)
Q Consensus 853 ~v~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~~~V~~~~~~~~~~~~~l~~~~-----------~~--~~~~~~~ 918 (1801)
|++| .++++++++.+|++ ....+......||++.+....++. ..-...+.... .+ ..+-...
T Consensus 799 ~~a~--~~~~i~~v~~s~~v~s~~~d~~~~~y~Q~v~~~~~st~~--~~~~~~~a~e~p~~K~~~~~~~~~~~~~d~~Vd 874 (1710)
T KOG1070|consen 799 FVAF--VSNLIALVKVSHLVDSELDDLTKAEYGQSVTVKLLSTEP--KVVKDLKAVEKPKKKKEKKFIKVSSNDSDNEVD 874 (1710)
T ss_pred heee--cccccceeeccccccccccccceeeeecccceEEEecCh--hHHHHHHhhcchhhccceeEEEeccccCCCccc
Confidence 9999 46699999999986 445566677778999999998762 11111111110 00 1111112
Q ss_pred cccccCCCCCCcceEEEEEEEEeCCeEEEEeCCCeeEEEEeeeecCCcCccccCcCcCCCCCCEEEEEEEeee-ec----
Q 000242 919 KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS-NK---- 993 (1801)
Q Consensus 919 ~~~~~~~~~~~G~~v~~~V~~v~~~~~~v~l~~~~~G~v~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~-~~---- 993 (1801)
.+.++.+++.+|.++.|+|++|+++|++|.|+.+.+||||++|++|+..++.. |+++|++|+.|.++|++.+ .+
T Consensus 875 ~a~k~~~~~~igsiv~a~v~svKp~~L~v~l~~~~~gri~isev~d~~~eitD-p~~k~~vG~~I~vrviG~~D~k~lpi 953 (1710)
T KOG1070|consen 875 LAIKSTEDLSIGSIVRAYVKSVKPDQLNVLLAANHHGRIHISEVLDNLHEITD-PLDKFKVGDGIFVRVIGGHDVKDLPI 953 (1710)
T ss_pred cccccccceeeeeEEEEEEeeecccceEEeccccccCceehHHhhccccccCC-hhhhcccCCeEEEEEEcCCccccCcc
Confidence 34667889999999999999999999999999999999999999999877544 9999999999999999985 11
Q ss_pred -CCCCCcceEEEEeccCCccccccCCcccccccccCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhhhc
Q 000242 994 -PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1072 (1801)
Q Consensus 994 -~~~~~~~~~elS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~~~ 1072 (1801)
....+..++|||+||+.++......+ +.. +++.||.++|+|.++..+++|+.++|.++||||+.+++.+...+++|
T Consensus 954 th~i~k~~v~ElSvkps~les~~~~t~-s~~--q~~~gq~vtGfV~nv~ke~~w~~isp~v~~RIplld~s~~~~~le~~ 1030 (1710)
T KOG1070|consen 954 THLISKEQVLELSVKPSELESDEFNTT-STK--QFKAGQEVTGFVNNVSKEWLWVRISPFVDGRIPLLDTSLDLHVLELP 1030 (1710)
T ss_pred ccccchhhhhhhccChhhhcccccccc-chh--hhhcCCeEEEEEEccccceeEEEccccccceeeeeeccchhhhhhCc
Confidence 01234679999999999984432111 222 47999999999999999999999999999999999999888889999
Q ss_pred cccCCCCcEEEEEEEEEeCCCcEEEEEecccccCcCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCceE
Q 000242 1073 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1152 (1801)
Q Consensus 1073 ~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~ 1152 (1801)
+..|++|++++++|+..+..+ .+.+..... ..... .+|+++.|+|.++.++ ++.++++.+..
T Consensus 1031 e~~F~~g~al~~~V~~~~~~~---tv~~iG~~~--------~~k~~-----s~G~~l~Grv~kv~~~--~~~l~~~~~~~ 1092 (1710)
T KOG1070|consen 1031 ESLFPLGKALDEYVVRNDKSK---TVRAIGFSK--------SDKNP-----SPGDILFGRVSKVLPG--YLILQLPFKVF 1092 (1710)
T ss_pred hhhcccccceeeEEeccccee---EEEeccccc--------CCCCC-----Ccchhhcceeeeeccc--eeEEecCCccc
Confidence 999999999999999977322 222222110 01111 1899999999999998 89999999999
Q ss_pred EEEecc-cccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCCCCCCC
Q 000242 1153 GRVHFT-ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1231 (1801)
Q Consensus 1153 G~v~~s-el~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~id~~~~~~~~l~lS~r~~~~~~~~~~~~~~~~~~~~ 1231 (1801)
|+++.. +++++|..+ |...|..++.+.+++|.++.. ++.+.||+|.+++.+.. ...
T Consensus 1093 G~~~~i~~~~d~~~~~-----------P~~~f~~~~~v~~~~L~vs~~---n~~leLslr~sr~~~t~---------~~~ 1149 (1710)
T KOG1070|consen 1093 GRVSFIEDMSDSYSMT-----------PVEHFTKIQIVYVCVLSVSAL---NKGLELSLRESRTKITP---------VDS 1149 (1710)
T ss_pred cceEEeeehhccccCC-----------hHHhcccccEEEEEEEEEecc---cccceeecccccccCcc---------ccc
Confidence 988765 999999887 889999999999999999976 44499999988743322 234
Q ss_pred CcccccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000242 1232 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1311 (1801)
Q Consensus 1232 ~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~l 1311 (1801)
.++.+..+.++++|++++|||.++.+.|+|+.+++++.|+++++++++.|...|++.|++|++|.++|+++++..+|+.|
T Consensus 1150 kd~~iks~eDlk~g~iv~G~V~nv~~~glfi~ls~~v~a~v~is~~~ds~~k~w~k~~~~gklv~~rv~~ve~~s~riel 1229 (1710)
T KOG1070|consen 1150 KDGSIKSIEDLKIGDIVRGFVKNVETKGLFIALSRKVEAFVPISGLSDSFEKEWEKHLPVGKLVTGRVLSVEEDSKRIEL 1229 (1710)
T ss_pred cCCcccchhhcccCceeEEEEEEecCCcEEEEEccceEEEEEccccccchhhhhhccCCccceeeeEEEEeeccCceEEE
Confidence 67788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCC-ceeEEeeccccCcccccCcccccCCCCEEEEEE
Q 000242 1312 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1390 (1801)
Q Consensus 1312 Slk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l~~~-~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~V 1390 (1801)
+||++....... ......++++|+...|+|.++.+||+||+++++ ++.|+||++++++.+.++....|..|+.|+|.+
T Consensus 1230 ~Lk~s~~~d~~~-~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~~~e~~d~~~e~it~~~~~~~~V~a~~ 1308 (1710)
T KOG1070|consen 1230 SLKNSDIKDTVK-LLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCHISEEADDRGENITALYYAGDRVKACV 1308 (1710)
T ss_pred EEeccccCCchh-hhhhhhhhhccccccceEEEecCCceEEEecCcceecccccceeecchhhhhcccceeccceeeeEe
Confidence 999987643222 334567999999999999999999999999975 479999999999999999999999999999999
Q ss_pred EEEecCCCeeEEeecccccCCCccccccCcccchhhhHhhhcccCcccccccCccccccccccccCCCcccc--cccccc
Q 000242 1391 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL--AQIESR 1468 (1801)
Q Consensus 1391 l~id~e~~ri~lslK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 1468 (1801)
++++.+++||++++|.+|+..+++.......++.-+. +.+....-...+....+|.+.+ +....... ..++..
T Consensus 1309 lk~~~ek~rIsl~~k~s~~~~~dd~~~~~~~~e~v~~--~~~~~~d~~s~~~~~~~d~g~q---~~~~g~~~e~~~d~~~ 1383 (1710)
T KOG1070|consen 1309 LKEDSEKKRISLGLKSSYLSSEDDARITSYGEEGVEM--EEESHSDPKSMEEVAAEDPGFQ---SSSGGFNLEDAVDEMS 1383 (1710)
T ss_pred eeccchhhhhhhhhhhhccCChhhhhcccccccCcch--hcccccCccchhhhcccCCCcc---ccccceehhhhhhhcc
Confidence 9999999999999999999664322211000000000 0000000000000000000000 00000000 001111
Q ss_pred cCCCCc-cc-cCCCCCCCcCCCCCCCCCCcchhchhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHH
Q 000242 1469 ASVPPL-EV-NLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVR 1546 (1801)
Q Consensus 1469 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~~~~~a~~~fer~L~ 1546 (1801)
...+++ +- .|++++.|+.-+++ +.++++.+ ++++..+++.|.+...+++.++. +.|++.++|+|+++
T Consensus 1384 ~~~p~~le~s~~td~e~d~~~~~~--e~~qde~d--------ee~e~~kee~e~~~~~~e~~dl~-~~pesaeDferlvr 1452 (1710)
T KOG1070|consen 1384 ETLPDALEDSCETDSEVDEEVEDE--ELDQDEKD--------EEKEKDKEEREENRSDEEERDLS-RAPESAEDFERLVR 1452 (1710)
T ss_pred ccCCchhhhcccchhhhhhccccc--cccccccc--------hhhhhhhhhccccccchhhcccc-cCCcCHHHHHHHHh
Confidence 111221 11 14443322211111 00111000 01111122233344444444444 79999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH
Q 000242 1547 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1626 (1801)
Q Consensus 1547 ~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~ 1626 (1801)
.+||++.+|++||+|+++.+++++||++++|||.+|++||+.|++|+|+||+|+|+.|| +.++..++|+||+++|++.
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~kVFeRAcqycd~~ 1530 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKKVFERACQYCDAY 1530 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHHHHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999999999999999999999 7899999999999999999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000242 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1705 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le 1705 (1801)
.+|.+|+.+|.+.+++++|.++|++|+++|++..++|..|++|++++ +.++|+.+++|||+.+|+++|+++...||+++
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000242 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1785 (1801)
Q Consensus 1706 ~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a 1785 (1801)
|++|+++|||++||..|..+|+|.|+|+.|+++++++|+.+.+|.+|||++++++++++|++||++|++||.++||.+.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 000242 1786 EYVKQKAMEYVESTL 1800 (1801)
Q Consensus 1786 ~~v~~rAl~~v~~~~ 1800 (1801)
+.|++||.+||++..
T Consensus 1691 E~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1691 EYVKARAKEYVESIK 1705 (1710)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999854
No 2
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=100.00 E-value=1e-109 Score=1032.04 Aligned_cols=1466 Identities=22% Similarity=0.255 Sum_probs=1080.9
Q ss_pred CeEEEEEeEEccccEEEEcCCCcEEEEeccccCchh------hcccc----c--------ccc---------CCCCCccc
Q 000242 1 MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI------LDNEI----E--------ANE---------DNLLPTIF 53 (1801)
Q Consensus 1 m~~lg~v~~i~~~~l~vslp~~l~g~v~~~~is~~~------~~~~~----~--------~~~---------~~~l~~~f 53 (1801)
|++||+|++|+..|+.+|+|++|+|||++|+||+.+ ++... + .++ .+++.+.|
T Consensus 118 ~~llgvIs~i~~~Dl~isv~~~l~g~v~~t~lS~~~~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~~q~pn~~~~l 197 (1710)
T KOG1070|consen 118 MLLLGVISKINGNDLKISVKGGLNGYVLNTHLSDEMLAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEKSQFPNLGAKL 197 (1710)
T ss_pred ceeeeeeeeccccceeEEccCcccccccccccCHhHhhhhhhhccccccccccccchhcCCccccchhhhccCchhhhhc
Confidence 899999999999999999999999999999999995 22210 0 011 24677889
Q ss_pred ccCcEEEEEEEEeecc-ccccCeeEEEEEechhhhccCCCcccccCCcEEEEEEeeeeceeEEEEecCCcceeeccCCCc
Q 000242 54 HVGQLVSCIVLQLDDD-KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL 132 (1801)
Q Consensus 54 ~~Gq~v~~~V~~~~~~-~~~~~~~~i~Ls~~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~g~~~~~gfl~~~~~ 132 (1801)
++||||||.|++.... ....+++++++++.|...| +++.++|.|||+++|.|+||+|||+++|| +.+++|||+++|+
T Consensus 198 KvGq~l~~~V~k~~s~~v~ks~~~~~~~t~~~t~~~-~~~~~~LvpGt~vqa~V~sv~~~Gi~~di-l~~ftG~l~~~hl 275 (1710)
T KOG1070|consen 198 KVGQWLRVSVTKSTSERVVKSTKFVEVLTLNPTSCN-GLALNDLVPGTMVQAEVQSVEDHGITLDI-LNGFTGFLDKKHL 275 (1710)
T ss_pred ccCceEEEEEEeccCceEEecccceeeecccchhcc-ccchhhcCCcceEEEEecceecCcEEEEe-cccccceeehhhC
Confidence 9999999999987651 1111368899999999999 89999999999999999999999999999 7999999999999
Q ss_pred CcCCCCccCCCcEEEEEEEEEcCCCcEEEEccCccccccccccccccccccccCCCceEEEEEEEEecCeEEEEeCCceE
Q 000242 133 AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 212 (1801)
Q Consensus 133 ~~~~~~~~~~G~~~~~~v~~~~~~~~~v~ls~~~~~~~~~~~~~~~~~~~~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~ 212 (1801)
.+.. .+.+||.++|.|+. .+.|++.+.+... +++... -..+++++.||..++.....+.+.|..+++.+--.
T Consensus 276 ~~~~--~~~~~~~~l~~vi~--~s~Rv~~~~f~~k--a~ki~~--l~~~v~ai~p~~~~~~~~~e~~k~G~~~K~~vi~~ 347 (1710)
T KOG1070|consen 276 PPFL--RYFENQEKLGKVIH--KSDRVFVVDFFDK--ASKILV--LKAGVDAIAPSRIEKVLSFEIFKIGNKVKCRVIDV 347 (1710)
T ss_pred Cchh--hccccHHHhhcccc--hhhheeeechhhc--cceEEE--ecCccceEccCCcccccchhhcccCceEEEEEEEE
Confidence 7654 58899999999865 4467776654211 111111 12367788899999988888999998888877677
Q ss_pred EEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeC--C-CCeEEEeeCchhccCCC--CC----CCCCCCCeEEeeEEE
Q 000242 213 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDP--T-SRAVGLTLNPYLLHNRA--PP----SHVKVGDIYDQSKVV 283 (1801)
Q Consensus 213 g~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~--~-~~~v~lSl~~~~~~~~~--~~----~~~~~G~iv~~~~V~ 283 (1801)
+..+..|+....+ .+++..|..+.-|++|++..-| . +-.++++-+||+..+.. |. ....+|..+-.|.+.
T Consensus 348 ~~~~~~~~~tl~~-s~ie~k~~~~s~V~~r~l~~~~~svdt~~~~l~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak 426 (1710)
T KOG1070|consen 348 LQMDSLALFTLKE-SAIEGKFSLVSDVSPRGLLKKPVSVDTEEVGLSPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAK 426 (1710)
T ss_pred eeccceEEeecch-hhccCceEEEeccCCceEEEecccCChhhhhccccchhhceeecCCCcccccccceeeEEeeccce
Confidence 7778888775543 5788899999999999998877 2 33799999999987542 22 456667766667766
Q ss_pred EEeCCceEEEEeCCCCCceeeEEeecccchHHHHhhh----ccccCCCEEEEEEEEEeecCCeEEEEeeccccccccccc
Q 000242 284 RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE----KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 359 (1801)
Q Consensus 284 ~v~~~~G~~v~~~~~~~~v~gfv~~s~~~~~~~~~~~----~~~~vG~~~~~rV~~~~~~~~~~~~s~k~~~~~~~~~~~ 359 (1801)
...-..++++.... +.+.+|+++..++...+.+.. ..|++|+++.|||.+|.+.+..++|++.++++..++++.
T Consensus 427 ~~~vt~~v~~~sK~--pvis~y~~~~~~t~~~l~~v~q~~v~~~e~~te~~~rv~~v~~v~~v~~v~~~~svl~lk~~~~ 504 (1710)
T KOG1070|consen 427 CGSVTLKVLCVSKL--PVISMYADAVKLTHGMLSKVPQGMVPIYEVGTEVKSRVWQVFYVGKVVIVSVRESVLGLKFLRV 504 (1710)
T ss_pred eeeeeeeeeEeecC--cceEEEeeccccCcchhhccccCCCCceecCCcccCccceecccCcEEEEEEehHhhccccccc
Confidence 66655555666543 346899999887777666552 359999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEEEEecCceEEEeCCC-eEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eCCeEEEEEccccc
Q 000242 360 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 436 (1801)
Q Consensus 360 ~~l~~G~~v~g~V~~v~~~G~~V~l~~~-v~g~vp~~hls~~~~~~~~~~~~vG~~v~~rVl~v--~~~~i~ls~k~~l~ 436 (1801)
+||..|++|.|+|.++++.|+.|.+..+ |.|++|..|++|.+...|...|++|..+++|||.+ +.+++.||+|++|+
T Consensus 505 nDI~iG~~V~~~I~~vt~~Gv~v~v~~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~RVl~~~~~~~~v~l~~K~slv 584 (1710)
T KOG1070|consen 505 NDIEIGQLVPGVIRKVTPQGVEVLVTFGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKLRVLSVNRDRNRVALTLKKSLV 584 (1710)
T ss_pred ccccccceeeeEEEEecCCcEEEEEecCceeeecChHhhhhcccccccceeeeccccEEEEEEEEccCCeeEEEechhhh
Confidence 9999999999999999999999998655 99999999999999999999999999999999999 68999999999999
Q ss_pred cchhhhhhhhhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCCCCCCCCCCccCCCEEEEEEEEEeCCCCeE
Q 000242 437 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 516 (1801)
Q Consensus 437 ~~~~~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l 516 (1801)
+..+|...+|++++||++++|+|..+.++||||+|+||+.||+|.++|+..++.+++++|++||+|.+.|+++|++++||
T Consensus 585 ~~~~plp~d~~~~~pg~~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm 664 (1710)
T KOG1070|consen 585 NTQLPLPSDFEQAIPGKITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRM 664 (1710)
T ss_pred cccCCCccchhhcCCCceEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCc----ccccccCCCeEEEEEEEEecCcEEEEEEEcCceeEEEecccccCccc-cccccccc--------
Q 000242 517 NLSFMMKPTRVS----EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE-HATVMKSV-------- 583 (1801)
Q Consensus 517 ~lS~k~~~~~~~----~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~-~~~~~~~~-------- 583 (1801)
.+|++.+.+... ..+.+..|.+..+.+...+.+.+.|++. ..++.|++...||.|... .+..+...
T Consensus 665 ~l~~r~s~~~~a~~~~~~e~~~~g~v~s~~~~~~tkd~viVei~-~~~~~~v~~~~~L~dg~v~~~~~~~~kl~~~t~~~ 743 (1710)
T KOG1070|consen 665 PLGLRASSCARACVKRSVENFVKGGVKSLKSIDKTKDSVIVEIV-DQGITGVGVFGELVDGSVVVNKVLENKLRKNTSLL 743 (1710)
T ss_pred ehhhhhhhhHHHHHHHHHHHhhccccccceeehhccccEEEEcc-CcceEEEEEEEEEccCceEEccchhhhhhhcchhh
Confidence 999998875321 3366778888888899998999999994 347999999999998321 11111111
Q ss_pred -ccCCCeEe-eEEEeecCCCeEEEeccchhhchhhcCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccC
Q 000242 584 -IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 661 (1801)
Q Consensus 584 -~k~G~~i~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s 661 (1801)
+.+|+.+. +++.+|..++-+.++.++. +|....++..|...+++|.+|.+.|.|+.|.+++.++++.+.+.
T Consensus 744 ~lv~gq~~~~~i~~isl~k~lv~~s~~~~-------L~~~~~~l~k~~~~~~~v~~is~~~~~~a~~~~~i~~v~~s~~v 816 (1710)
T KOG1070|consen 744 HLVVGQVTVGVILSISLKKSLVLISLCTD-------LPNNATKLLKGSYALALVRSISKEGKFVAFVSNLIALVKVSHLV 816 (1710)
T ss_pred eeeecceeEEEEEEeehhhhhhhcccccc-------ccchHHHHhcCchhHHHHHhhhhheeheeecccccceeeccccc
Confidence 44666666 5555554444444444444 44456677889999999999999999999999999999999987
Q ss_pred cccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccCCCChhhHHHHHhHHHHHHHhhcccCCCcccccccccccc
Q 000242 662 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 741 (1801)
Q Consensus 662 ~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 741 (1801)
+....+....+ -||.|.|++.++++......++++......... +... ..--..+|-....+-..++.+|
T Consensus 817 ~s~~~d~~~~~-y~Q~v~~~~~st~~~~~~~~~a~e~p~~K~~~~-----~~~~----~~~~~d~~Vd~a~k~~~~~~ig 886 (1710)
T KOG1070|consen 817 DSELDDLTKAE-YGQSVTVKLLSTEPKVVKDLKAVEKPKKKKEKK-----FIKV----SSNDSDNEVDLAIKSTEDLSIG 886 (1710)
T ss_pred cccccccceee-eecccceEEEecChhHHHHHHhhcchhhcccee-----EEEe----ccccCCCccccccccccceeee
Confidence 66555544333 349999999999988777777776554311000 0000 0000001111111223789999
Q ss_pred cEEEEEEEEeecceeEEEecccCceeeEEeeeecCCc---------ccccCCeEEEEEEEe-----------ecccceEE
Q 000242 742 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA---------TVESGSVIQAAILDV-----------AKAERLVD 801 (1801)
Q Consensus 742 ~~v~~~V~~~~~~g~~v~~~~~~~~~g~i~~~~ls~~---------~~~~G~~v~~~vl~~-----------~~~~~~v~ 801 (1801)
++|.++|++++++++.|.+.. ++.|-||.+|+-+. .+++|+.|.++|+.. -..++..+
T Consensus 887 siv~a~v~svKp~~L~v~l~~--~~~gri~isev~d~~~eitDp~~k~~vG~~I~vrviG~~D~k~lpith~i~k~~v~E 964 (1710)
T KOG1070|consen 887 SIVRAYVKSVKPDQLNVLLAA--NHHGRIHISEVLDNLHEITDPLDKFKVGDGIFVRVIGGHDVKDLPITHLISKEQVLE 964 (1710)
T ss_pred eEEEEEEeeecccceEEeccc--cccCceehHHhhccccccCChhhhcccCCeEEEEEEcCCccccCccccccchhhhhh
Confidence 999999999999999999986 58899998887652 799999999999876 12456689
Q ss_pred EeehhhhHhhhhhcchhhHHhHhhhhhccccccCCcceEEEEEEEEeceeEEEeecCCcceEEEEeeecCCCCCCCcccc
Q 000242 802 LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQF 881 (1801)
Q Consensus 802 ls~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~v~v~~~~~~~~~g~~~~~~~~~~~~~~~~f 881 (1801)
||.||+.++. .+..+ .+..+++.|++|+|+|.++..+++++++. ..+.|.+|.-+...+
T Consensus 965 lSvkps~les-~~~~t-----------~s~~q~~~gq~vtGfV~nv~ke~~w~~is--p~v~~RIplld~s~~------- 1023 (1710)
T KOG1070|consen 965 LSVKPSELES-DEFNT-----------TSTKQFKAGQEVTGFVNNVSKEWLWVRIS--PFVDGRIPLLDTSLD------- 1023 (1710)
T ss_pred hccChhhhcc-ccccc-----------cchhhhhcCCeEEEEEEccccceeEEEcc--ccccceeeeeeccch-------
Confidence 9999999883 22221 23356899999999999999999999983 333444444332100
Q ss_pred cCCCeEEEEEeecCCCCcccceeheehhccccccccccccccCCCCCCcceEEEEEEEEeCCeEEEEeCCCeeEEEEeee
Q 000242 882 LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 961 (1801)
Q Consensus 882 ~~Gq~v~~~V~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~v~~~~~~v~l~~~~~G~v~~~e 961 (1801)
.|..
T Consensus 1024 ---------------------------------------------------------------------------~~~l- 1027 (1710)
T KOG1070|consen 1024 ---------------------------------------------------------------------------LHVL- 1027 (1710)
T ss_pred ---------------------------------------------------------------------------hhhh-
Confidence 0000
Q ss_pred ecCCcCccccCcCcCCCCCCEEEEEEEeeeecCCCCCcceEEEEeccCCccccccCCcccccccccCCCCEEEEEEEEEe
Q 000242 962 VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1041 (1801)
Q Consensus 962 ~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~~~~~~~~elS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~ 1041 (1801)
++|-+.|..|+.++|+|...+. ..+++.--... .... ..+|++.-|.|..+.
T Consensus 1028 ---------e~~e~~F~~g~al~~~V~~~~~----------~~tv~~iG~~~-------~~k~--~s~G~~l~Grv~kv~ 1079 (1710)
T KOG1070|consen 1028 ---------ELPESLFPLGKALDEYVVRNDK----------SKTVRAIGFSK-------SDKN--PSPGDILFGRVSKVL 1079 (1710)
T ss_pred ---------hCchhhcccccceeeEEecccc----------eeEEEeccccc-------CCCC--CCcchhhcceeeeec
Confidence 2333456666666666655430 00011000000 0111 258999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcc-ccCCCCchhhhccccCCCCcEEEEEEEEEeCCCcEEEEEecccccCc-----CCcccccc
Q 000242 1042 NEWALLTISRHLKAQLFIL-DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI-----SDKTVDIS 1115 (1801)
Q Consensus 1042 ~~~~~v~l~~~~~g~l~~~-~~~~~~~~~~~~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~~-----~~~~~~~~ 1115 (1801)
.+++.++++...-|+.+.. ++++++. .+|...|..++.+.++++.++...+.+.||++...... .++.-...
T Consensus 1080 ~~~~~l~~~~~~~G~~~~i~~~~d~~~--~~P~~~f~~~~~v~~~~L~vs~~n~~leLslr~sr~~~t~~~~kd~~iks~ 1157 (1710)
T KOG1070|consen 1080 PGYLILQLPFKVFGRVSFIEDMSDSYS--MTPVEHFTKIQIVYVCVLSVSALNKGLELSLRESRTKITPVDSKDGSIKSI 1157 (1710)
T ss_pred cceeEEecCCccccceEEeeehhcccc--CChHHhcccccEEEEEEEEEecccccceeecccccccCccccccCCcccch
Confidence 9999999999999977655 6666653 36778899999999999999988888999998543311 12211223
Q ss_pred cccccccccCCCEEEEEEEEEeeCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q 000242 1116 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1195 (1801)
Q Consensus 1116 ~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~ 1195 (1801)
+++ +.|+++.|.|..+.+. |+|+.++.++.++++++++++.+... +...|++|+.+.++|+.
T Consensus 1158 eDl-----k~g~iv~G~V~nv~~~--glfi~ls~~v~a~v~is~~~ds~~k~-----------w~k~~~~gklv~~rv~~ 1219 (1710)
T KOG1070|consen 1158 EDL-----KIGDIVRGFVKNVETK--GLFIALSRKVEAFVPISGLSDSFEKE-----------WEKHLPVGKLVTGRVLS 1219 (1710)
T ss_pred hhc-----ccCceeEEEEEEecCC--cEEEEEccceEEEEEccccccchhhh-----------hhccCCccceeeeEEEE
Confidence 444 4999999999999999 99999999999999999999988776 67789999999999999
Q ss_pred eecCCCCcceEEEeecccccCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEeeceEEEEeCCCc--EEEEE
Q 000242 1196 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL--DAKVL 1273 (1801)
Q Consensus 1196 id~~~~~~~~l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v--~g~v~ 1273 (1801)
++.+ .+++.||++++..+.. ........+++.|+...|+|..+.++|+|+.+++++ .|++|
T Consensus 1220 ve~~---s~riel~Lk~s~~~d~--------------~~~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~ 1282 (1710)
T KOG1070|consen 1220 VEED---SKRIELSLKNSDIKDT--------------VKLLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCH 1282 (1710)
T ss_pred eecc---CceEEEEEeccccCCc--------------hhhhhhhhhhhccccccceEEEecCCceEEEecCcceeccccc
Confidence 9987 6799999999861111 112334567899999999999999999999999876 99999
Q ss_pred cccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEE
Q 000242 1274 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1353 (1801)
Q Consensus 1274 ~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~fV~ 1353 (1801)
+++.++...++-...|..|+.|.+.++..+.+.+||.+.+|.+......+. +++....-|+=.+
T Consensus 1283 ~~e~~d~~~e~it~~~~~~~~V~a~~lk~~~ek~rIsl~~k~s~~~~~dd~----------------~~~~~~~e~v~~~ 1346 (1710)
T KOG1070|consen 1283 ISEEADDRGENITALYYAGDRVKACVLKEDSEKKRISLGLKSSYLSSEDDA----------------RITSYGEEGVEME 1346 (1710)
T ss_pred ceeecchhhhhcccceeccceeeeEeeeccchhhhhhhhhhhhccCChhhh----------------hcccccccCcchh
Confidence 999999999998889999999999999999999999999998765321110 0100000000000
Q ss_pred EeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecccccCCCccccccCcccchhhhHhhhcc
Q 000242 1354 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGS 1433 (1801)
Q Consensus 1354 l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1433 (1801)
-+. ..++ +.-+.+-+ +...|.. +.....
T Consensus 1347 ~~~----------------~~d~----~s~~~~~~----------------~d~g~q~----------~~~g~~------ 1374 (1710)
T KOG1070|consen 1347 EES----------------HSDP----KSMEEVAA----------------EDPGFQS----------SSGGFN------ 1374 (1710)
T ss_pred ccc----------------ccCc----cchhhhcc----------------cCCCccc----------ccccee------
Confidence 000 0000 00000000 0000000 000000
Q ss_pred cCcccccccCcccccccccc-ccCCCcccccccccccCCCCccccCCCCCCCcCCCCCCC---CCCcchh--chhhhhhh
Q 000242 1434 YNRSSLLENSSVAVQDMDME-SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN---QGHTDEA--KTIDEKNN 1507 (1801)
Q Consensus 1434 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~ 1507 (1801)
...+....++ ..++.+ ++++.+. +.+++ + .+.+.++++.+++. -++.+++ ++......
T Consensus 1375 -~e~~~d~~~~---~~p~~le~s~~td~--e~d~~--------~--~~~e~~qde~dee~e~~kee~e~~~~~~e~~dl~ 1438 (1710)
T KOG1070|consen 1375 -LEDAVDEMSE---TLPDALEDSCETDS--EVDEE--------V--EDEELDQDEKDEEKEKDKEEREENRSDEEERDLS 1438 (1710)
T ss_pred -hhhhhhhccc---cCCchhhhcccchh--hhhhc--------c--ccccccccccchhhhhhhhhccccccchhhcccc
Confidence 0000000000 000000 0000000 00000 0 00000000000000 0000000 00000000
Q ss_pred hhhhhHHHHHHHHH----------H-HHHHHHHhccCCCCcHHHHHHHHH-cCCC----CHHHHHHHHHHHHhcCCHHHH
Q 000242 1508 RHAKKKEKEEREQE----------I-RAAEERLLEKDAPRTPDEFERLVR-SSPN----SSFVWIKYMAFMLSMADVEKA 1571 (1801)
Q Consensus 1508 ~~~~~~~~~~~e~~----------~-~~~e~~~~~~~~~~a~~~fer~L~-~~P~----s~~~W~~y~~~~~~~~e~d~A 1571 (1801)
+ .....++.+.. | +-+.-.+.-++.+.|++.+||+|. .|+. --.+|++|.+++..-|.-+..
T Consensus 1439 ~--~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1439 R--APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred c--CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 0 00011111111 2 223333334668899999999995 4553 468999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHH
Q 000242 1572 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLY 1650 (1801)
Q Consensus 1572 r~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~g~~~~A~~~~~ 1650 (1801)
.++|+||-+-+.. +.++.+++.++.....+ +.|.++|++.++...+ ..+|..|+.++.+.++-++|+++++
T Consensus 1517 ~kVFeRAcqycd~------~~V~~~L~~iy~k~ek~--~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1517 KKVFERACQYCDA------YTVHLKLLGIYEKSEKN--DEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred HHHHHHHHHhcch------HHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999999986653 56899999999888854 8999999999988874 5999999999999999999999999
Q ss_pred HHHHhcCC--CHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Q 000242 1651 KMIKKFKH--SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--Y 1725 (1801)
Q Consensus 1651 ~~~k~~~~--~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~--~ 1725 (1801)
+|++-.|. ..++-...|+..++. +.+++|.+|+-.|..+|++. ++|+-|+.++.++|+.+.+|.+|||++.. .
T Consensus 1589 rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRt--DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRT--DLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccch--hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 99998775 788888999999999 99999999999999999995 89999999999999999999999999865 4
Q ss_pred CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1726 PKRTD-LWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1726 P~~~d-lw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
|++.- ++..|.++|-+.||-+.+..+=.||.+
T Consensus 1667 ~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1667 IKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred hhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 66554 677889999999998887777777665
No 3
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-63 Score=595.86 Aligned_cols=491 Identities=23% Similarity=0.279 Sum_probs=440.9
Q ss_pred ccccccCCCceEEEEEEEEecCeEEEEeCCceEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCCeEEEeeCc
Q 000242 180 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 259 (1801)
Q Consensus 180 ~~~~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~g~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~lSl~~ 259 (1801)
.+...+.||++|.|+|.+|.++++.|++++..+|+||...++.... ...|++|+.+.++|+.+.+....+.||.+.
T Consensus 14 ~~~~~~~~G~vV~G~Vv~i~~~~v~Vdig~Kseg~ip~~E~~~~~~----~~~~~~gd~v~v~v~~~e~~~g~~~lS~~k 89 (541)
T COG0539 14 KSDEEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPV----EDVVQVGDEVEVLVLRVEDGEGELVLSRRK 89 (541)
T ss_pred cchhccCCCCEEEEEEEEEeCCeEEEEecCccccEeEHHHhccccc----cceecCCCEEEEEEEEEecCCceEEeeHHH
Confidence 4677899999999999999999999999999999999999987643 237999999999999999988899999987
Q ss_pred hhcc--CCCCCCCCCCCCeEEeeEEEEEeCCceEEEEeCCCCCceeeEEeecccchHHHHhhhccccCCCEEEEEEEEEe
Q 000242 260 YLLH--NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 337 (1801)
Q Consensus 260 ~~~~--~~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~~~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~ 337 (1801)
.-.. |......+..|.+|+ ++|....++ |+.|++.+ ++||+|.|+++..+++++. -.+|.++.++|+.++
T Consensus 90 ~~~~~~w~~l~~~~e~~~~V~-~~v~~~vKG-G~~Vdi~g----vr~FlP~S~v~~r~v~d~~--~~~Gk~~~~kiie~d 161 (541)
T COG0539 90 AERERAWEKLEEAFENGEIVE-GKITGKVKG-GLTVDIEG----VRAFLPGSLVDVRPVRDLD--PLIGKELEFKILELD 161 (541)
T ss_pred HHHHHhHHHHHHHHhcCCeEE-EEEEEEecC-cEEEEECC----EEEeccHHHhccccccccc--ccCCceEEEEEEEEc
Confidence 6543 544557889999998 677777788 99999962 6999999999988777764 479999999999999
Q ss_pred ecCCeEEEEeecccc----ccccccccCCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCC
Q 000242 338 HLEGLATGILKASAF----EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 413 (1801)
Q Consensus 338 ~~~~~~~~s~k~~~~----~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~~~~~~~vG~ 413 (1801)
..++.+++|.+.... +++...++.+++|++|+|+|++++++|+||+|+ |++|+||.+||||.++.+|++.|++||
T Consensus 162 ~~~n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdig-GvdGLlHiseiS~~rv~~P~~vvkvGd 240 (541)
T COG0539 162 KKRNNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGD 240 (541)
T ss_pred cccCcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEec-CeeeEEehhhccccccCCHHHhcccCC
Confidence 999999999775544 556788999999999999999999999999998 599999999999999999999999999
Q ss_pred EEEEEEEEE--eCCeEEEEEccccccchhhhhhhhh-hcCCCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCCCCC
Q 000242 414 ELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYA-EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 490 (1801)
Q Consensus 414 ~v~~rVl~v--~~~~i~ls~k~~l~~~~~~~~~~~~-~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~ 490 (1801)
+|+|+||.+ +++|+.||+|+++.+ ||.... ...+|+.+.|+|+++.+|||||++++|+.||+|.|+|+|....
T Consensus 241 ~VkvkVi~~D~e~~RVsLSlK~l~~d----Pw~~i~~~~~~g~~v~G~Vt~i~~~GafVei~~GvEGlvhvSEisw~~~~ 316 (541)
T COG0539 241 EVKVKVISLDEERGRVSLSLKQLEED----PWEGIEKKYPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKN 316 (541)
T ss_pred EEEEEEEEEccCCCeEEEEehhcccC----cHHHHhhhcCCCCEEEEEEEEeecCcEEEEecCCccceeechhhcccccC
Confidence 999999999 689999999998886 555543 4689999999999999999999999999999999999999887
Q ss_pred CCCCCccCCCEEEEEEEEEeCCCCeEEEEEeeCCC-CCc-ccccccCCCeEEEEEEEEecCcEEEEEEEcCceeEEEecc
Q 000242 491 EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT-RVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 568 (1801)
Q Consensus 491 ~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~~-~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~ 568 (1801)
.|++++++||+|.|+|+++|++++||+||||+... ||. ....+++|+.++|+|.+++++|+||.+ .++++|+++.+
T Consensus 317 ~P~evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~~~~g~~v~g~v~~~t~~g~fv~l--e~gidG~vh~~ 394 (541)
T COG0539 317 VPSEVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADKHPVGDVVEGKVKSITDFGAFVEL--EGGIDGLVHLS 394 (541)
T ss_pred CHHHhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhhhcCCCCeEEEEEeeecccceEEcc--CCCccceEEHH
Confidence 79999999999999999999999999999998754 554 335589999999999999999999999 78899999999
Q ss_pred cccCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhhchhhcCCCccccCCCCCEEEEEEEEEecCeEEEEE
Q 000242 569 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 647 (1801)
Q Consensus 569 ~lsd~~~~~~~~~~~~k~G~~i~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f 647 (1801)
+|+|.....+.. .|+.|++++ .+|.+|.+++++.|+.|+...+||+... ..++.|+.++|+|+++.++|+||+|
T Consensus 395 d~sw~~~~~~~~--~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~~p~~~~~---~~~~~~~~v~~~v~~i~~~G~~v~l 469 (541)
T COG0539 395 DLSWDRPGEEAE--KYKKGDEVEAKVLAVDKEKERISLGIKQLEESPWEEFS---EKYKKGSVVKGKVKSVKDKGAFVEL 469 (541)
T ss_pred hcCccccCcHHH--hhccCcEEEEEEEEEecccceeeeehhhhccCchhhhH---hhccCCCeEEEEEEEEccCceEEEe
Confidence 999966554443 899999999 8999999999999999999999887543 3488999999999999999999999
Q ss_pred CCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000242 648 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701 (1801)
Q Consensus 648 ~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~ 701 (1801)
.+++.||+|.++++.. .|++||+|.|+|+++|+.++++.||+|....
T Consensus 470 ~~~v~G~i~~~~~~~~-------~~~~gd~v~a~v~~id~k~~ki~lSik~~~~ 516 (541)
T COG0539 470 GGGVEGLIRLSELSRD-------VLKVGDEVEAVVVSIDKKNRKILLSIKALER 516 (541)
T ss_pred cCceeeeeecchhhhh-------hccCCCEEEEEEEEEcCCCCEEEEEechhhh
Confidence 9999999999999865 7999999999999999999999999997654
No 4
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-59 Score=561.38 Aligned_cols=496 Identities=23% Similarity=0.324 Sum_probs=440.1
Q ss_pred CCCCCCCCeEEeeEEEEEeCCceEEEEeCCCCCceeeEEeecccchHHHHhhhccccCCCEEEEEEEEEeecCCeEEEEe
Q 000242 268 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 347 (1801)
Q Consensus 268 ~~~~~~G~iv~~~~V~~v~~~~G~~v~~~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~~~~~~~s~ 347 (1801)
...+.+|+++. ++|+.++.+ +++|+++.+ ..|++|+++++..+... .|++|+.+.+.|+.....++.+++|.
T Consensus 16 ~~~~~~G~vV~-G~Vv~i~~~-~v~Vdig~K---seg~ip~~E~~~~~~~~---~~~~gd~v~v~v~~~e~~~g~~~lS~ 87 (541)
T COG0539 16 DEEFEPGDVVK-GTVVSIEKD-GVLVDIGGK---SEGVIPISEFSNEPVED---VVQVGDEVEVLVLRVEDGEGELVLSR 87 (541)
T ss_pred hhccCCCCEEE-EEEEEEeCC-eEEEEecCc---cccEeEHHHhccccccc---eecCCCEEEEEEEEEecCCceEEeeH
Confidence 46789999997 789999998 899999975 38999999998765444 48999999999999988888899997
Q ss_pred ecccccc-ccccccCCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eC
Q 000242 348 KASAFEG-LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 424 (1801)
Q Consensus 348 k~~~~~~-~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~~~~~~~vG~~v~~rVl~v--~~ 424 (1801)
++....+ +......+..|.+|+|+|+...+.|++|++. |+.||+|.+|++..++.++ .-.+|.+++++|+.+ .+
T Consensus 88 ~k~~~~~~w~~l~~~~e~~~~V~~~v~~~vKGG~~Vdi~-gvr~FlP~S~v~~r~v~d~--~~~~Gk~~~~kiie~d~~~ 164 (541)
T COG0539 88 RKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIE-GVRAFLPGSLVDVRPVRDL--DPLIGKELEFKILELDKKR 164 (541)
T ss_pred HHHHHHHhHHHHHHHHhcCCeEEEEEEEEecCcEEEEEC-CEEEeccHHHhcccccccc--cccCCceEEEEEEEEcccc
Confidence 7665444 3445566789999999999999999999998 5999999999987655443 246899999999999 57
Q ss_pred CeEEEEEccccccchhhhh-hhhhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCCCCCCCCCCccCCCEEE
Q 000242 425 KRITVTHKKTLVKSKLAIL-SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 503 (1801)
Q Consensus 425 ~~i~ls~k~~l~~~~~~~~-~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~ 503 (1801)
+++.+|+|..+..+....- .-+.++++|+++.|+|+++++||+||++ +|++||+|+++|+|.++.+|++.|++||+|+
T Consensus 165 n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdi-gGvdGLlHiseiS~~rv~~P~~vvkvGd~Vk 243 (541)
T COG0539 165 NNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDI-GGVDGLLHISEISWKRVDHPSEVVKVGDEVK 243 (541)
T ss_pred CcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEe-cCeeeEEehhhccccccCCHHHhcccCCEEE
Confidence 8999999988876554332 2367789999999999999999999999 5699999999999999999999999999999
Q ss_pred EEEEEEeCCCCeEEEEEeeCC-CCCc-ccccccCCCeEEEEEEEEecCcEEEEEEEcCceeEEEecccccCccccccccc
Q 000242 504 CRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 581 (1801)
Q Consensus 504 ~rVl~~d~~~~~l~lS~k~~~-~~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~ 581 (1801)
|+|+++|++++|+.||+|+.. .||. ....+++|+.+.|+|++++++|+||++ .++++|++|.+++||..... ..
T Consensus 244 vkVi~~D~e~~RVsLSlK~l~~dPw~~i~~~~~~g~~v~G~Vt~i~~~GafVei--~~GvEGlvhvSEisw~~~~~--P~ 319 (541)
T COG0539 244 VKVISLDEERGRVSLSLKQLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEI--EEGVEGLVHVSEISWTKKNV--PS 319 (541)
T ss_pred EEEEEEccCCCeEEEEehhcccCcHHHHhhhcCCCCEEEEEEEEeecCcEEEEe--cCCccceeechhhcccccCC--HH
Confidence 999999999999999999864 4665 447799999999999999999999999 88999999999999955333 46
Q ss_pred ccccCCCeEe-eEEEeecCCCeEEEeccchhhchhhcCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCcc
Q 000242 582 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 660 (1801)
Q Consensus 582 ~~~k~G~~i~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~ 660 (1801)
+.+++||+++ ++|.+|++++||+|++|+...+||+..... +++|+.+.|.|.++|++|+||.+.+|++||+|.+++
T Consensus 320 evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~---~~~g~~v~g~v~~~t~~g~fv~le~gidG~vh~~d~ 396 (541)
T COG0539 320 EVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADK---HPVGDVVEGKVKSITDFGAFVELEGGIDGLVHLSDL 396 (541)
T ss_pred HhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhhh---cCCCCeEEEEEeeecccceEEccCCCccceEEHHhc
Confidence 7899999999 899999999999999999999999865533 889999999999999999999999999999999999
Q ss_pred CcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccCCCChhhHHHHHhHHHHHHHhhcccCCCccccccccccc
Q 000242 661 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 740 (1801)
Q Consensus 661 s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1801)
+|.....+...|+.|+.+.|.|+.+|++++|++|++|+... +|| ..+...++.
T Consensus 397 sw~~~~~~~~~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~------------------------~p~---~~~~~~~~~ 449 (541)
T COG0539 397 SWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIKQLEE------------------------SPW---EEFSEKYKK 449 (541)
T ss_pred CccccCcHHHhhccCcEEEEEEEEEecccceeeeehhhhcc------------------------Cch---hhhHhhccC
Confidence 99888777779999999999999999999999999998754 344 445677999
Q ss_pred ccEEEEEEEEeecceeEEEecccCceeeEEeeeecCCcccccCCeEEEEEEEeecccceEEEeehhhhHhh
Q 000242 741 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 811 (1801)
Q Consensus 741 G~~v~~~V~~~~~~g~~v~~~~~~~~~g~i~~~~ls~~~~~~G~~v~~~vl~~~~~~~~v~ls~k~~l~~~ 811 (1801)
|+.|+|+|++++++|+++.+.+ ++.|+++..+++...+++||+++|+|+.+|+.++.+.||+|+...+.
T Consensus 450 ~~~v~~~v~~i~~~G~~v~l~~--~v~G~i~~~~~~~~~~~~gd~v~a~v~~id~k~~ki~lSik~~~~~e 518 (541)
T COG0539 450 GSVVKGKVKSVKDKGAFVELGG--GVEGLIRLSELSRDVLKVGDEVEAVVVSIDKKNRKILLSIKALERKE 518 (541)
T ss_pred CCeEEEEEEEEccCceEEEecC--ceeeeeecchhhhhhccCCCEEEEEEEEEcCCCCEEEEEechhhhhh
Confidence 9999999999999999999986 57999999999999999999999999999999999999999987754
No 5
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=4e-56 Score=575.70 Aligned_cols=494 Identities=20% Similarity=0.244 Sum_probs=421.3
Q ss_pred cccccccCCCceEEEEEEEEecCeEEEEeCCceEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCCeEEEeeC
Q 000242 179 GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 258 (1801)
Q Consensus 179 ~~~~~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~g~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~lSl~ 258 (1801)
..++..+.+|.+|.|+|.+|.++++.|++++..+|+|+..++.. .+++|++|+|+|+.+++. + +.||..
T Consensus 313 ~~~~~~~~~G~iV~G~Vv~i~~~~v~VdiG~K~eGiI~~~E~~~---------~~kvGd~i~~~V~~~~~~-~-~~LS~~ 381 (863)
T PRK12269 313 RYSFEAPEPGSVRMGTVVQVNAGTVFVDIGGKSEGRVPVEEFEA---------PPKAGDGVRVYVERVTPY-G-PELSKT 381 (863)
T ss_pred hhccccCCCCCEEEEEEEEEECCEEEEEeCCCceEEeEHHHhcc---------CCCCCCEEEEEEEEEcCC-c-eEEEeh
Confidence 44578899999999999999999999999999999999988732 479999999999999874 3 788887
Q ss_pred chhc--cCCCCCCCCCCCCeEEeeEEEEEe--CCceEEEEeCCCCCceeeEEeecccchHHHHhhhccccCCCEEEEEEE
Q 000242 259 PYLL--HNRAPPSHVKVGDIYDQSKVVRVD--RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 334 (1801)
Q Consensus 259 ~~~~--~~~~~~~~~~~G~iv~~~~V~~v~--~~~G~~v~~~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~ 334 (1801)
.... .|....+++..|++++ ++|.+++ .+ |++|+++.+ ++||+|.|+++....+++. ..+|+++.+.|+
T Consensus 382 ~~~~~~~~~~l~~a~~~g~~V~-G~Vv~v~~~kg-G~~Vdig~~---~~gfiP~se~~~~~~~~~~--~~vG~~ie~~V~ 454 (863)
T PRK12269 382 KADRLGLKVKLRDAERDGTPVE-GRIVRLTEKKS-GFEVDLGAG---MMAFLPISQSDCQKVDAPE--SLIGLTSKFYIE 454 (863)
T ss_pred HhhhhHHHHHHHHHHhCCCeEE-EEEEEEEeecC-EEEEEECCC---cEEEEEHHHhccccccchH--HhCCCeEEEEEE
Confidence 5432 1344457889999998 7888874 35 999999643 4999999998765544443 469999999999
Q ss_pred EEee-----cCCeEEEEeeccccc----cccccccCCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCC
Q 000242 335 GFRH-----LEGLATGILKASAFE----GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 405 (1801)
Q Consensus 335 ~~~~-----~~~~~~~s~k~~~~~----~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~~ 405 (1801)
.++. .++.+++|.+....+ .....++++++|++|+|+|++++++|+||+++ |++||||.+|++|.+..+|
T Consensus 455 ~~~~~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~l~~G~~V~G~Vk~i~~~G~fVdl~-Gv~Gfvp~SeiS~~~v~~~ 533 (863)
T PRK12269 455 RISQSKQHRGNDNIVINRRRYLEERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARP 533 (863)
T ss_pred EEecccccCCCCeEEEEHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEEEEeCCcEEEEEC-CEEEEEEchhccccccCCH
Confidence 9865 336788997654322 12334678999999999999999999999995 8999999999999988999
Q ss_pred CCCcccCCEEEEEEEEE--eCCeEEEEEccccccchhhhhhhh-hhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeccc
Q 000242 406 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 482 (1801)
Q Consensus 406 ~~~~~vG~~v~~rVl~v--~~~~i~ls~k~~l~~~~~~~~~~~-~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s 482 (1801)
.+.|++|++|+|+||.+ +++++.||+|..+.+ +|..+ +.+++|+++.|+|+++.++|+||++.+|+.||+|.|
T Consensus 534 ~~~~kvGq~v~vkVi~iD~e~~rI~LSlK~l~~~----p~~~~~~~~~vG~iV~G~V~~I~~fG~fVeL~~gveGLvhiS 609 (863)
T PRK12269 534 REFVKKGQTIELKVIRLDQAEKRINLSLKHFQPD----PWLEFENKFGVNDVVKGRVTKIADFGAFIELAEGIEGLAHIS 609 (863)
T ss_pred HHhccCCCEEEEEEEEEecCCCeEEEEEeccccc----hhhhhhccCCCCCEEEEEEEEEeCCeEEEEecCCceeeeEHH
Confidence 99999999999999999 478999999987544 45554 347899999999999999999999998999999999
Q ss_pred ccCC-CCCCCCCCCccCCCEEEEEEEEEeCCCCeEEEEEeeCC-CCCcc-cccccCCCeEEEEEEEEecCcEEEEEEEcC
Q 000242 483 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 559 (1801)
Q Consensus 483 ~~~~-~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~-~~~~~-~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~ 559 (1801)
+++| ....+|.+.|++||+|+|+|+++|++++|+.||+++.. +||.. .+.+++|++++|+|++++++|++|++ .+
T Consensus 610 Els~~~~~~~p~~~~kvGd~V~vkVl~iD~e~~rIsLS~K~l~~~Pw~~~~~~~~vG~~v~G~V~~i~~~G~fV~l--~~ 687 (863)
T PRK12269 610 EFSWVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIVKVTNAGAFIEM--EE 687 (863)
T ss_pred HhcCccccCCHHHcCCCCCEEEEEEEEEecccCceEEEehhcccCchHHHHHhCCCCCEEEEEEEEEecceEEEEe--CC
Confidence 9999 56778999999999999999999999999999999754 46654 46789999999999999999999999 78
Q ss_pred ceeEEEecccccCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhhchhhcCCCccccCCCCCEEEEEEEEE
Q 000242 560 YSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 638 (1801)
Q Consensus 560 ~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~i~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i 638 (1801)
+++|+||.++|||..... .....|++||.|+ +++.+|++++++.||+|+...++|.... .++++|+.+.|+|+++
T Consensus 688 gV~GlIh~sels~~~~~~-~~~~~~kvGq~VkvkVl~ID~e~rrI~LS~K~l~~dpw~~~~---~~~~vG~iV~GkV~~v 763 (863)
T PRK12269 688 GIDGFLHVDDLSWVKRTR-PADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVFA---NAYGVGSTVEGEVSSV 763 (863)
T ss_pred CcEEEEEhHHhhcccccc-chhhccCCCCEEEEEEEEEeccCCEEEEEecccccChHHHHH---hhCCCCCEEEEEEEEE
Confidence 999999999999744211 1234799999999 8999999999999999999988887532 3478999999999999
Q ss_pred ecCeEEEEECCCeEEEeeCCccCcccccCcc---cCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000242 639 IETGCFVRFLGRLTGFAPRSKAVDGQRADLS---KTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701 (1801)
Q Consensus 639 ~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~---~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~ 701 (1801)
+++|+||++.+|+.||+|.+++++++..++. ..|++||.|+|+|+++|+++++|.||+|+...
T Consensus 764 ~~~GvFVeL~~gVeGlI~~s~lsdd~~~~~~~~~~~f~vGD~V~v~Vl~iD~~~rkI~LSlk~~~~ 829 (863)
T PRK12269 764 TDFGIFVRVPGGVEGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVRDYQR 829 (863)
T ss_pred ecCeEEEEcCCCeEEEEEHHHcCCcccccchhhccccCCCCEEEEEEEEEEcCCCEEEEEEechhh
Confidence 9999999999999999999999998765543 45999999999999999999999999997754
No 6
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=6.6e-55 Score=564.41 Aligned_cols=507 Identities=19% Similarity=0.258 Sum_probs=414.4
Q ss_pred cccccCCcceEEEEEEEEeceeEEEeecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEeecCCCCcccceeheehh
Q 000242 830 ASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 909 (1801)
Q Consensus 830 ~~~~l~~G~~v~g~V~~i~~~~v~v~~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~~~~~~~~~~~~l~~~~ 909 (1801)
++..++.|+.|+|+|..++++++||++ +++..|++|.++|. ..+++|++|.|.|..++. .+ ..|+...
T Consensus 315 ~~~~~~~G~iV~G~Vv~i~~~~v~Vdi--G~K~eGiI~~~E~~------~~~kvGd~i~~~V~~~~~---~~-~~LS~~~ 382 (863)
T PRK12269 315 SFEAPEPGSVRMGTVVQVNAGTVFVDI--GGKSEGRVPVEEFE------APPKAGDGVRVYVERVTP---YG-PELSKTK 382 (863)
T ss_pred ccccCCCCCEEEEEEEEEECCEEEEEe--CCCceEEeEHHHhc------cCCCCCCEEEEEEEEEcC---Cc-eEEEehH
Confidence 466799999999999999999999999 89999999999984 236899999999999862 23 3343321
Q ss_pred ccccccccccccccCCCCCCcceEEEEEEEEe--CCeEEEEeCCCeeEEEEeeeecCCcCccccCcCcCCCCCCEEEEEE
Q 000242 910 ISETETSSSKRAKKKSSYDVGSLVQAEITEIK--PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 987 (1801)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~v~--~~~~~v~l~~~~~G~v~~~e~~d~~~~~~~~p~~~~~~G~~v~~~V 987 (1801)
... ...+.+....++.|++|+|+|.++. +.|+.|+++.+..|+++.+|+..... ..+ ...+|++++++|
T Consensus 383 ~~~----~~~~~~l~~a~~~g~~V~G~Vv~v~~~kgG~~Vdig~~~~gfiP~se~~~~~~----~~~-~~~vG~~ie~~V 453 (863)
T PRK12269 383 ADR----LGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKV----DAP-ESLIGLTSKFYI 453 (863)
T ss_pred hhh----hHHHHHHHHHHhCCCeEEEEEEEEEeecCEEEEEECCCcEEEEEHHHhccccc----cch-HHhCCCeEEEEE
Confidence 110 0112223356789999999999984 57999999888999999999954321 112 235899999999
Q ss_pred EeeeecCCCCCcceEEEEeccCCccccccCCcccccccccCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCc
Q 000242 988 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1067 (1801)
Q Consensus 988 l~~~~~~~~~~~~~~elS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~ 1067 (1801)
+.++........+.+.||+|..+-..........+++ +++|+.|+|+|.++.+++++|+++ ++.|++|.++++|..
T Consensus 454 ~~~~~~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~--l~~G~~V~G~Vk~i~~~G~fVdl~-Gv~Gfvp~SeiS~~~- 529 (863)
T PRK12269 454 ERISQSKQHRGNDNIVINRRRYLEERARQAREEFFNS--VHIEDSVSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGH- 529 (863)
T ss_pred EEEecccccCCCCeEEEEHHHHHHHHHHHHHHHHHhc--CCCCCEEEEEEEEEeCCcEEEEEC-CEEEEEEchhccccc-
Confidence 9986321111234699999875332211000113443 589999999999999999999995 899999999999874
Q ss_pred hhhhccccCCCCcEEEEEEEEEeCCCcEEEEEecccccCcCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEe
Q 000242 1068 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1147 (1801)
Q Consensus 1068 ~~~~~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l 1147 (1801)
+.++.+.|++||.++|+|+++|.+++++.||++... .++|....+.++ +|+++.|+|+++.++ |+||+|
T Consensus 530 -v~~~~~~~kvGq~v~vkVi~iD~e~~rI~LSlK~l~---~~p~~~~~~~~~-----vG~iV~G~V~~I~~f--G~fVeL 598 (863)
T PRK12269 530 -VARPREFVKKGQTIELKVIRLDQAEKRINLSLKHFQ---PDPWLEFENKFG-----VNDVVKGRVTKIADF--GAFIEL 598 (863)
T ss_pred -cCCHHHhccCCCEEEEEEEEEecCCCeEEEEEeccc---cchhhhhhccCC-----CCCEEEEEEEEEeCC--eEEEEe
Confidence 557778899999999999999999999999999864 367765555555 999999999999999 999999
Q ss_pred CCceEEEEecccccc-cccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCC
Q 000242 1148 GPHLYGRVHFTELKN-ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1226 (1801)
Q Consensus 1148 ~~~~~G~v~~sel~d-~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~id~~~~~~~~l~lS~r~~~~~~~~~~~~~~~ 1226 (1801)
++++.|++|++|++| ....+ |.+.|++||.|+|+|+++|.+ ++++.||++... .+|
T Consensus 599 ~~gveGLvhiSEls~~~~~~~-----------p~~~~kvGd~V~vkVl~iD~e---~~rIsLS~K~l~-----~~P---- 655 (863)
T PRK12269 599 AEGIEGLAHISEFSWVKKTSK-----------PSDMVKIGDEVECMILGYDIQ---AGRVSLGLKQVT-----ANP---- 655 (863)
T ss_pred cCCceeeeEHHHhcCccccCC-----------HHHcCCCCCEEEEEEEEEecc---cCceEEEehhcc-----cCc----
Confidence 999999999999976 23334 788899999999999999976 679999999876 233
Q ss_pred CCCCCCcccccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCccc-CCccccCCCCcEEEEEEEEEeCC
Q 000242 1227 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPL 1305 (1801)
Q Consensus 1227 ~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~-~~~~~~f~~G~~V~~~Vl~vd~~ 1305 (1801)
+.....++++|+++.|+|++++++|+||+++++++|+||.++++|... .++.+.|++||.|+|+|+++|++
T Consensus 656 --------w~~~~~~~~vG~~v~G~V~~i~~~G~fV~l~~gV~GlIh~sels~~~~~~~~~~~~kvGq~VkvkVl~ID~e 727 (863)
T PRK12269 656 --------WEEIEARYPVGARFTRRIVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQ 727 (863)
T ss_pred --------hHHHHHhCCCCCEEEEEEEEEecceEEEEeCCCcEEEEEhHHhhccccccchhhccCCCCEEEEEEEEEecc
Confidence 333346799999999999999999999999999999999999999765 44556899999999999999999
Q ss_pred CCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCc---ccccCC
Q 000242 1306 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI---ETIYRA 1382 (1801)
Q Consensus 1306 ~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~---~~~~~~ 1382 (1801)
++|+.||+|+...+||.. ...++++|++|.|+|+++++||+||+|.+ +++|++|+|+++|++..++ .+.|++
T Consensus 728 ~rrI~LS~K~l~~dpw~~----~~~~~~vG~iV~GkV~~v~~~GvFVeL~~-gVeGlI~~s~lsdd~~~~~~~~~~~f~v 802 (863)
T PRK12269 728 ARRIRLGVKQLSDNPWQV----FANAYGVGSTVEGEVSSVTDFGIFVRVPG-GVEGLVRKQHLVENRDGDPGEALRKYAV 802 (863)
T ss_pred CCEEEEEecccccChHHH----HHhhCCCCCEEEEEEEEEecCeEEEEcCC-CeEEEEEHHHcCCcccccchhhccccCC
Confidence 999999999988777653 24568999999999999999999999987 8999999999999875443 356999
Q ss_pred CCEEEEEEEEEecCCCeeEEeecccc
Q 000242 1383 GEKVKVKILKVDKEKRRISLGMKSSY 1408 (1801)
Q Consensus 1383 Gd~V~~~Vl~id~e~~ri~lslK~~~ 1408 (1801)
||.|+++|+++|+++++|.||+|+..
T Consensus 803 GD~V~v~Vl~iD~~~rkI~LSlk~~~ 828 (863)
T PRK12269 803 GDRVKAVIVDMNVKDRKVAFSVRDYQ 828 (863)
T ss_pred CCEEEEEEEEEEcCCCEEEEEEechh
Confidence 99999999999999999999999853
No 7
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=7.6e-55 Score=563.90 Aligned_cols=496 Identities=20% Similarity=0.251 Sum_probs=432.6
Q ss_pred cccCCCceEEEEEEEEecCeEEEEeCCceEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCCeEEEeeCchhc
Q 000242 183 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262 (1801)
Q Consensus 183 ~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~g~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~lSl~~~~~ 262 (1801)
..+.+|++|.|+|.++.++|+.|++++...|++|..|++.... ...|++|++++|+|+.+++..+.+.||+++...
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdig~k~~g~lp~~e~~~~~~----~~~~~vG~~i~~~V~~~~~~~~~i~lS~k~~~~ 101 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDVGLKSEGRIPLEEFKNEQG----ELEVKVGDEVEVYVERIEDGFGETVLSREKAKR 101 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEeCCCeEEEEEHHHhcCccc----cccCCCCCEEEEEEEEEECCCCcEEEechHHHH
Confidence 4578999999999999999999999888999999999985322 236999999999999999988999999987644
Q ss_pred c--CCCCCCCCCCCCeEEeeEEEEEeCCceEEEEeCCCCCceeeEEeecccchHHHHhhhccccCCCEEEEEEEEEeecC
Q 000242 263 H--NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 340 (1801)
Q Consensus 263 ~--~~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~~~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~~ 340 (1801)
. |....+++..|++|+ ++|..+..+ |++|++++ ++||+|.+++++....+++ +.+|+++.|+|+.++...
T Consensus 102 ~~~~~~l~~~~~~g~~v~-g~V~~~~~~-G~~V~~~g----~~gfip~s~~~~~~~~~~~--~~vG~~i~~~V~~~d~~~ 173 (565)
T PRK06299 102 LEAWDKLEKAFENGEIVE-GVINGKVKG-GFTVDLNG----VEAFLPGSQVDVRPVRDTD--PLEGKELEFKVIKLDKKR 173 (565)
T ss_pred HHHHHHHHHHhhCCCEEE-EEEEEEECC-EEEEEECC----EEEEEEHHHccCcCCCChH--HhCCCEEEEEEEEEECCC
Confidence 3 444446788999998 788888887 99999972 6999999999876655553 679999999999999999
Q ss_pred CeEEEEeecccccc----ccccccCCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEE
Q 000242 341 GLATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416 (1801)
Q Consensus 341 ~~~~~s~k~~~~~~----~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~~~~~~~vG~~v~ 416 (1801)
+.+.+|+++..... +...+.++++|++++|+|+++.++|++|+++ +++|++|.++++|.+..+|.+.|++|++|+
T Consensus 174 ~~i~lS~k~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~~~~~~~~~kvG~~v~ 252 (565)
T PRK06299 174 NNIVVSRRAVLEEERAEEREELLENLEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKRVNHPSEVVNVGDEVK 252 (565)
T ss_pred CEEEEEhHHhhhhhhhhHHHHHHhcCCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccccCCHhhcCCCCCEEE
Confidence 99999988765322 2344678999999999999999999999998 899999999999988899999999999999
Q ss_pred EEEEEE--eCCeEEEEEccccccchhhhhhhh-hhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCC-CCCCC
Q 000242 417 FRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEP 492 (1801)
Q Consensus 417 ~rVl~v--~~~~i~ls~k~~l~~~~~~~~~~~-~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~-~~~~~ 492 (1801)
|+|+++ +++++.||+|....+ +|..+ +.+++|+++.|+|+++.++|+||++.+++.||+|.++++|. ...+|
T Consensus 253 v~V~~~d~~~~~i~lS~k~~~~~----p~~~~~~~~~~G~~v~g~V~~i~~~G~fV~l~~~v~Glv~~sel~~~~~~~~~ 328 (565)
T PRK06299 253 VKVLKFDKEKKRVSLGLKQLGED----PWEAIEKKYPVGSKVKGKVTNITDYGAFVELEEGIEGLVHVSEMSWTKKNKHP 328 (565)
T ss_pred EEEEEEeCCCCeEEEEEEecccC----hhHHHHhhCCCCCEEEEEEEEEeCCeEEEEeCCCCEEEEEHHHcCccccccCH
Confidence 999999 468999999987654 45443 35689999999999999999999999899999999999875 34567
Q ss_pred CCCccCCCEEEEEEEEEeCCCCeEEEEEeeCC-CCCc-ccccccCCCeEEEEEEEEecCcEEEEEEEcCceeEEEecccc
Q 000242 493 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570 (1801)
Q Consensus 493 ~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~-~~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~l 570 (1801)
...|++||.|+|+|+++|++++++.||+++.. .++. ....+++|++|.|+|+.++++|++|++ .++++|++|..+|
T Consensus 329 ~~~~~~G~~v~v~V~~id~~~~~i~ls~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l--~~~v~g~i~~s~l 406 (565)
T PRK06299 329 SKVVSVGQEVEVMVLEIDEEKRRISLGLKQCKENPWEEFAEKYPVGDVVEGKVKNITDFGAFVGL--EGGIDGLVHLSDI 406 (565)
T ss_pred HHhcCCCCEEEEEEEEEcCCCCEEEEehHHhccchhhhHHHhCCCCCEEEEEEEEEecceEEEEC--CCCCEEEEEHHHc
Confidence 77899999999999999999999999998653 3443 234678999999999999999999999 7789999999999
Q ss_pred cCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhhchhhcCCCccccCCCCCEEEEEEEEEecCeEEEEECC
Q 000242 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649 (1801)
Q Consensus 571 sd~~~~~~~~~~~~k~G~~i~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~ 649 (1801)
++... .......|++||.++ +++.+|.+++++.||+|++..++|... .+++++|+++.|+|.++.++|+||++.+
T Consensus 407 ~~~~~-~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ls~k~~~~~p~~~~---~~~~~~G~vV~G~V~~v~~~G~fV~l~~ 482 (565)
T PRK06299 407 SWDKK-GEEAVELYKKGDEVEAVVLKVDVEKERISLGIKQLEEDPFEEF---AKKHKKGSIVTGTVTEVKDKGAFVELED 482 (565)
T ss_pred Ccccc-ccChHhhCCCCCEEEEEEEEEeCCCCEEEEEEehhhcCchhHH---HhhcCCCCEEEEEEEEEecCceEEecCC
Confidence 97431 123457899999999 789999999999999999998887643 3567899999999999999999999999
Q ss_pred CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000242 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701 (1801)
Q Consensus 650 ~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~ 701 (1801)
|+.||+|.+++++.++.++.+.|++||.|+|+|+++|++++|+.||+|++..
T Consensus 483 gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V~~vd~~~~~i~LS~k~~~~ 534 (565)
T PRK06299 483 GVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRISLSIKALDE 534 (565)
T ss_pred CcEEEEEHHHhcchhccCccccCCCCCEEEEEEEEEccccCEEEEEeeehhh
Confidence 9999999999999999999999999999999999999999999999998754
No 8
>TIGR00717 rpsA ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
Probab=100.00 E-value=6.7e-55 Score=560.35 Aligned_cols=490 Identities=22% Similarity=0.292 Sum_probs=424.6
Q ss_pred cccCCCceEEEEEEEEecCeEEEEeCCceEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCCeEEEeeCchhc
Q 000242 183 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 262 (1801)
Q Consensus 183 ~~l~pG~~v~~~V~~v~~~gl~v~~~~~~~g~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~lSl~~~~~ 262 (1801)
..+.||++|.|+|.++.++|++|+|++..+|+++..+++... ..|++|+++.++|+.+++..+++.||+.+...
T Consensus 14 ~~~~~G~~v~g~V~~i~~~~~~v~~g~k~~g~i~~~E~~~~~------~~~~vGd~i~~~V~~~~~~~g~i~lS~~~~~~ 87 (516)
T TIGR00717 14 EETRPGSIVKGTVVAINKDTVFVDVGLKSEGRIPKEEFLDAP------LEIQVGDEVEVYLDRVEDRFGETVLSREKAQR 87 (516)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEcCCCcEEEEEHHHhcCCc------cCCCCCCEEEEEEEEEeCCCCcEEEEHHHhhh
Confidence 458999999999999999999999999999999999987532 46999999999999999888999999987543
Q ss_pred c--CCCCCCCCCCCCeEEeeEEEEEeCCceEEEEeCCCCCceeeEEeecccchHHHHhhhccccCCCEEEEEEEEEeecC
Q 000242 263 H--NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 340 (1801)
Q Consensus 263 ~--~~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~~~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~~ 340 (1801)
. |.....++..|++++ ++|.++..+ |++|++++ ++||+|.++++.....+. .+.+|++++|+|+.++...
T Consensus 88 ~~~~~~l~~a~~~g~~v~-g~V~~~~~~-g~~V~i~g----~~~flP~s~~~~~~~~~~--~~~vG~~i~~~v~~~~~~~ 159 (516)
T TIGR00717 88 HELWIKLEKAYEEGSIVE-GKIVGKVKG-GFIVDLNG----VEAFLPGSQVDVKPIKDL--DSLIGKTLKFKIIKLDQKR 159 (516)
T ss_pred hHHHHHHHHHhhCCCeEE-EEEEEEECC-EEEEEECC----EEEEEeHHHhcCcccCch--hhhCCCEEEEEEEEEECCC
Confidence 2 333346678999998 789999888 99999972 599999999875433333 3679999999999999988
Q ss_pred CeEEEEeecccccc----ccccccCCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEE
Q 000242 341 GLATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 416 (1801)
Q Consensus 341 ~~~~~s~k~~~~~~----~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~~~~~~~vG~~v~ 416 (1801)
+.+++|+++...+. ....+.++++|++|+|+|+++.++|++|+++ +++|++|.+++++.+..+|.+.|++|++|+
T Consensus 160 ~~iv~Srk~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~~~~~~~~~~vG~~v~ 238 (516)
T TIGR00717 160 NNIVVSRRAYLEEERSQAREELLENLKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKRVKHPSEYVKVGQEVK 238 (516)
T ss_pred CcEEEEHHHHHHHHHHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCCCCCHHHhccCCCEEE
Confidence 89999987653321 2345678999999999999999999999996 799999999999988888988999999999
Q ss_pred EEEEEE--eCCeEEEEEccccccchhhhhhhh-hhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCC-CCCCC
Q 000242 417 FRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEP 492 (1801)
Q Consensus 417 ~rVl~v--~~~~i~ls~k~~l~~~~~~~~~~~-~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~-~~~~~ 492 (1801)
|+|+++ +++++.||+|....+ +|..+ +.+++|+++.|+|+++.++|+||++.+++.||+|.++++|. ...+|
T Consensus 239 v~Vl~~d~~~~~i~lS~k~~~~~----p~~~~~~~~~~G~i~~g~V~~v~~~G~fV~l~~~v~g~v~~sels~~~~~~~~ 314 (516)
T TIGR00717 239 VKVIKFDKEKGRISLSLKQLGED----PWEAIEKKFPVGDKITGRVTNLTDYGVFVEIEEGIEGLVHVSEMSWVKKNSHP 314 (516)
T ss_pred EEEEEEECCCCcEEEEEEecchh----HHHHHHhhccCCCEEEEEEEEeeCCcEEEEeCCCCEEEEEHHHcCCccccCCH
Confidence 999999 467899999977543 45554 35789999999999999999999999999999999999975 34566
Q ss_pred CCCccCCCEEEEEEEEEeCCCCeEEEEEeeCC-CCCc-ccccccCCCeEEEEEEEEecCcEEEEEEEcCceeEEEecccc
Q 000242 493 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 570 (1801)
Q Consensus 493 ~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~-~~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~l 570 (1801)
.+.|++||.|+|+|+++|++++++.||+++.. .++. ..+.+++|++++|+|++++++|++|++ +++++|++|.++|
T Consensus 315 ~~~~~vG~~v~v~V~~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l--~~~v~glv~~s~l 392 (516)
T TIGR00717 315 SKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANPWEQFEEKHPVGDRVTGKIKKITDFGAFVEL--EGGIDGLIHLSDI 392 (516)
T ss_pred HHhccCCCEEEEEEEEEcCCCCEEEEEehhcccCcHHHHHHhCCCCCEEEEEEEEEecceEEEEC--CCCCEEEEEHHHC
Confidence 67799999999999999999999999998653 3443 234578999999999999999999999 7799999999999
Q ss_pred cCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhhchhhcCCCccccCCCCCEEEEEEEEEecCeEEEEECC
Q 000242 571 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 649 (1801)
Q Consensus 571 sd~~~~~~~~~~~~k~G~~i~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~ 649 (1801)
+|.... ......+++|+.++ +++.+|.+++++.||+|++..++|... .+++++|+.+.|+|++++++|+||++.+
T Consensus 393 s~~~~~-~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ls~K~~~~~p~~~~---~~~~~~G~~v~g~V~~v~~~G~fV~l~~ 468 (516)
T TIGR00717 393 SWDKDG-READHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENPWEKF---AAKYKVGSVVKGKVTEIKDFGAFVELPG 468 (516)
T ss_pred cCcccC-CCHhHccCCCCEEEEEEEEEeCcCCEEEEeeccccCCchhhh---hhccCcceEEEEEEEEEecceEEEEcCC
Confidence 974321 12246899999999 789999999999999999988888643 3557899999999999999999999999
Q ss_pred CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000242 650 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697 (1801)
Q Consensus 650 ~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk 697 (1801)
++.||+|.+++++.+..++.+.|++||.|+|+|+++|++++|+.||+|
T Consensus 469 ~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~id~~~~~i~ls~k 516 (516)
T TIGR00717 469 GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKVSLSVK 516 (516)
T ss_pred CeEEEEEHHHcCccccccccccCCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999986
No 9
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=3.1e-54 Score=558.25 Aligned_cols=508 Identities=22% Similarity=0.305 Sum_probs=425.4
Q ss_pred cccCCcceEEEEEEEEeceeEEEeecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEeecCCCCcccceeheehhcc
Q 000242 832 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 911 (1801)
Q Consensus 832 ~~l~~G~~v~g~V~~i~~~~v~v~~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~~~~~~~~~~~~l~~~~~~ 911 (1801)
..++.|+.|+|+|..+++++++|++ +++..|++|.+++.. ..+...|.+|+++.+.|..++. ..++++|+.+...
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdi--g~k~~g~lp~~e~~~-~~~~~~~~vG~~i~~~V~~~~~--~~~~i~lS~k~~~ 100 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDV--GLKSEGRIPLEEFKN-EQGELEVKVGDEVEVYVERIED--GFGETVLSREKAK 100 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEe--CCCeEEEEEHHHhcC-ccccccCCCCCEEEEEEEEEEC--CCCcEEEechHHH
Confidence 4578999999999999999999999 788999999999962 2234579999999999999873 4566666554321
Q ss_pred ccccccccccccCCCCCCcceEEEEEEEEeCCeEEEEeCCCeeEEEEeeeecCCcCccccCcCcCCCCCCEEEEEEEeee
Q 000242 912 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 991 (1801)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~G~~v~~~V~~v~~~~~~v~l~~~~~G~v~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~ 991 (1801)
. ...+......++.|++++|+|.++.+.|+.|+++ ++.|++|.+++.+... .++ .+.+|++++|+|+.++
T Consensus 101 ~----~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~~~-g~~gfip~s~~~~~~~---~~~--~~~vG~~i~~~V~~~d 170 (565)
T PRK06299 101 R----LEAWDKLEKAFENGEIVEGVINGKVKGGFTVDLN-GVEAFLPGSQVDVRPV---RDT--DPLEGKELEFKVIKLD 170 (565)
T ss_pred H----HHHHHHHHHHhhCCCEEEEEEEEEECCEEEEEEC-CEEEEEEHHHccCcCC---CCh--HHhCCCEEEEEEEEEE
Confidence 1 0111222346778999999999999999999998 8999999999965431 122 2569999999999998
Q ss_pred ecCCCCCcceEEEEeccCCccccccCCcccccccccCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhhh
Q 000242 992 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1071 (1801)
Q Consensus 992 ~~~~~~~~~~~elS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~~ 1071 (1801)
.. +..+.||+|+..-..........+.+ +++|+.+.|+|..+.+++++|+++ ++.|++|.++++|.. +.+
T Consensus 171 ~~-----~~~i~lS~k~~~~~~~~~~~~~~~~~--l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~--~~~ 240 (565)
T PRK06299 171 KK-----RNNIVVSRRAVLEEERAEEREELLEN--LEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKR--VNH 240 (565)
T ss_pred CC-----CCEEEEEhHHhhhhhhhhHHHHHHhc--CCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccc--cCC
Confidence 32 23589999986522111000012333 699999999999999999999998 899999999998863 557
Q ss_pred ccccCCCCcEEEEEEEEEeCCCcEEEEEecccccCcCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCce
Q 000242 1072 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1151 (1801)
Q Consensus 1072 ~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~ 1151 (1801)
+.+.|++||.++|+|+.+|.+++++.||++... .+||......++ +|+++.|+|+++.++ |+||++++++
T Consensus 241 ~~~~~kvG~~v~v~V~~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~~v~g~V~~i~~~--G~fV~l~~~v 310 (565)
T PRK06299 241 PSEVVNVGDEVKVKVLKFDKEKKRVSLGLKQLG---EDPWEAIEKKYP-----VGSKVKGKVTNITDY--GAFVELEEGI 310 (565)
T ss_pred HhhcCCCCCEEEEEEEEEeCCCCeEEEEEEecc---cChhHHHHhhCC-----CCCEEEEEEEEEeCC--eEEEEeCCCC
Confidence 788899999999999999999999999999764 367765444455 999999999999999 9999999999
Q ss_pred EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCCCCCCC
Q 000242 1152 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1231 (1801)
Q Consensus 1152 ~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~id~~~~~~~~l~lS~r~~~~~~~~~~~~~~~~~~~~ 1231 (1801)
.|++|++|++++... .+|...|++|+.|+|+|+++|.+ ++++.||+|++. .+
T Consensus 311 ~Glv~~sel~~~~~~----------~~~~~~~~~G~~v~v~V~~id~~---~~~i~ls~k~~~-----~~---------- 362 (565)
T PRK06299 311 EGLVHVSEMSWTKKN----------KHPSKVVSVGQEVEVMVLEIDEE---KRRISLGLKQCK-----EN---------- 362 (565)
T ss_pred EEEEEHHHcCccccc----------cCHHHhcCCCCEEEEEEEEEcCC---CCEEEEehHHhc-----cc----------
Confidence 999999999764321 12667789999999999999976 679999999885 22
Q ss_pred CcccccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCccc-CCccccCCCCcEEEEEEEEEeCCCCEEE
Q 000242 1232 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1310 (1801)
Q Consensus 1232 ~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~-~~~~~~f~~G~~V~~~Vl~vd~~~~ri~ 1310 (1801)
++.....++++|+++.|+|++++++|+||+|+++++|++|+++++|.+. .+|.+.|++|+.|+|+|+++|+++++|.
T Consensus 363 --p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~g~i~~s~l~~~~~~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ 440 (565)
T PRK06299 363 --PWEEFAEKYPVGDVVEGKVKNITDFGAFVGLEGGIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERIS 440 (565)
T ss_pred --hhhhHHHhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHcCccccccChHhhCCCCCEEEEEEEEEeCCCCEEE
Confidence 2334456789999999999999999999999999999999999999887 8899999999999999999999999999
Q ss_pred EEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEE
Q 000242 1311 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1390 (1801)
Q Consensus 1311 lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~V 1390 (1801)
||+|+...+||.. ...++++|++|.|+|+++.++|+||.+.+ ++.|+||.|++++.++.++.+.|++||.|+|+|
T Consensus 441 ls~k~~~~~p~~~----~~~~~~~G~vV~G~V~~v~~~G~fV~l~~-gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V 515 (565)
T PRK06299 441 LGIKQLEEDPFEE----FAKKHKKGSIVTGTVTEVKDKGAFVELED-GVEGLIRASELSRDRVEDATEVLKVGDEVEAKV 515 (565)
T ss_pred EEEehhhcCchhH----HHhhcCCCCEEEEEEEEEecCceEEecCC-CcEEEEEHHHhcchhccCccccCCCCCEEEEEE
Confidence 9999998777643 35678999999999999999999999986 899999999999999999999999999999999
Q ss_pred EEEecCCCeeEEeeccccc
Q 000242 1391 LKVDKEKRRISLGMKSSYF 1409 (1801)
Q Consensus 1391 l~id~e~~ri~lslK~~~~ 1409 (1801)
+++|++++||+||+|++..
T Consensus 516 ~~vd~~~~~i~LS~k~~~~ 534 (565)
T PRK06299 516 INIDRKNRRISLSIKALDE 534 (565)
T ss_pred EEEccccCEEEEEeeehhh
Confidence 9999999999999999754
No 10
>TIGR00717 rpsA ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
Probab=100.00 E-value=4e-53 Score=543.95 Aligned_cols=501 Identities=21% Similarity=0.299 Sum_probs=416.7
Q ss_pred ccCCcceEEEEEEEEeceeEEEeecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEeecCCCCcccceeheehhccc
Q 000242 833 DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 912 (1801)
Q Consensus 833 ~l~~G~~v~g~V~~i~~~~v~v~~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~~~~~~~~~~~~l~~~~~~~ 912 (1801)
.+++|+.+.|+|..+++++++|+| +++..|++|.+++.. +...|++||.|.+.|..++ +..+++.|+......
T Consensus 15 ~~~~G~~v~g~V~~i~~~~~~v~~--g~k~~g~i~~~E~~~---~~~~~~vGd~i~~~V~~~~--~~~g~i~lS~~~~~~ 87 (516)
T TIGR00717 15 ETRPGSIVKGTVVAINKDTVFVDV--GLKSEGRIPKEEFLD---APLEIQVGDEVEVYLDRVE--DRFGETVLSREKAQR 87 (516)
T ss_pred cCCCCCEEEEEEEEEECCEEEEEc--CCCcEEEEEHHHhcC---CccCCCCCCEEEEEEEEEe--CCCCcEEEEHHHhhh
Confidence 488999999999999999999999 899999999999852 2267999999999999876 356776665443211
Q ss_pred cccccccccccCCCCCCcceEEEEEEEEeCCeEEEEeCCCeeEEEEeeeecCCcCccccCcCcCCCCCCEEEEEEEeeee
Q 000242 913 TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 992 (1801)
Q Consensus 913 ~~~~~~~~~~~~~~~~~G~~v~~~V~~v~~~~~~v~l~~~~~G~v~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~~ 992 (1801)
...+......+..|++++|+|.++.+.|+.|+++ +..|+++.+++.+... .+ ....+|++++|+|+.++.
T Consensus 88 ----~~~~~~l~~a~~~g~~v~g~V~~~~~~g~~V~i~-g~~~flP~s~~~~~~~---~~--~~~~vG~~i~~~v~~~~~ 157 (516)
T TIGR00717 88 ----HELWIKLEKAYEEGSIVEGKIVGKVKGGFIVDLN-GVEAFLPGSQVDVKPI---KD--LDSLIGKTLKFKIIKLDQ 157 (516)
T ss_pred ----hHHHHHHHHHhhCCCeEEEEEEEEECCEEEEEEC-CEEEEEeHHHhcCccc---Cc--hhhhCCCEEEEEEEEEEC
Confidence 0122222346779999999999999999999997 8999999999854321 11 245799999999999983
Q ss_pred cCCCCCcceEEEEeccCCccccccCCcccccccccCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhhhc
Q 000242 993 KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1072 (1801)
Q Consensus 993 ~~~~~~~~~~elS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~~~ 1072 (1801)
+ ...+.||+|+.+...........++. +++|+.++|+|.++.+++++|+++ ++.|++|.+++++.. ..++
T Consensus 158 ~-----~~~iv~Srk~~l~~~~~~~~~~~~~~--l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~--~~~~ 227 (516)
T TIGR00717 158 K-----RNNIVVSRRAYLEEERSQAREELLEN--LKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKR--VKHP 227 (516)
T ss_pred C-----CCcEEEEHHHHHHHHHHHHHHHHHHh--ccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCC--CCCH
Confidence 2 23588999875433211000112333 699999999999999999999996 799999999999864 4567
Q ss_pred cccCCCCcEEEEEEEEEeCCCcEEEEEecccccCcCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCceE
Q 000242 1073 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1152 (1801)
Q Consensus 1073 ~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~ 1152 (1801)
.+.|++|+.+.|+|+.+|.+++++.||++... .++|......++ +|+++.|+|+++.++ |+||++++++.
T Consensus 228 ~~~~~vG~~v~v~Vl~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~i~~g~V~~v~~~--G~fV~l~~~v~ 297 (516)
T TIGR00717 228 SEYVKVGQEVKVKVIKFDKEKGRISLSLKQLG---EDPWEAIEKKFP-----VGDKITGRVTNLTDY--GVFVEIEEGIE 297 (516)
T ss_pred HHhccCCCEEEEEEEEEECCCCcEEEEEEecc---hhHHHHHHhhcc-----CCCEEEEEEEEeeCC--cEEEEeCCCCE
Confidence 77899999999999999999999999999763 356654434444 999999999999999 99999999999
Q ss_pred EEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCCCCCCCC
Q 000242 1153 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1232 (1801)
Q Consensus 1153 G~v~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~id~~~~~~~~l~lS~r~~~~~~~~~~~~~~~~~~~~~ 1232 (1801)
|++|++|++++... .+|...|++|+.|+|+|+++|.+ ++++.||+|.+. .+
T Consensus 298 g~v~~sels~~~~~----------~~~~~~~~vG~~v~v~V~~id~~---~~~i~lS~k~~~-----~~----------- 348 (516)
T TIGR00717 298 GLVHVSEMSWVKKN----------SHPSKVVKKGDEVEVMILDIDPE---RRRLSLGLKQCK-----AN----------- 348 (516)
T ss_pred EEEEHHHcCCcccc----------CCHHHhccCCCEEEEEEEEEcCC---CCEEEEEehhcc-----cC-----------
Confidence 99999999864321 12556789999999999999976 679999999875 22
Q ss_pred cccccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCccc-CCccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000242 1233 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1311 (1801)
Q Consensus 1233 ~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~-~~~~~~f~~G~~V~~~Vl~vd~~~~ri~l 1311 (1801)
++....+++++|+++.|+|++++++|+||+++++++|++|+++++|.+. .++...|++|+.|.|+|+++|+++++|.|
T Consensus 349 -p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~glv~~s~ls~~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~i~l 427 (516)
T TIGR00717 349 -PWEQFEEKHPVGDRVTGKIKKITDFGAFVELEGGIDGLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISL 427 (516)
T ss_pred -cHHHHHHhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHCcCcccCCCHhHccCCCCEEEEEEEEEeCcCCEEEE
Confidence 2344455789999999999999999999999999999999999999865 56778899999999999999999999999
Q ss_pred EEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEE
Q 000242 1312 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1391 (1801)
Q Consensus 1312 Slk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl 1391 (1801)
|+|++..+||.. ...++++|+++.|+|++++++|+||.+.+ ++.||||.|++++++++++.+.|++||.|+++|+
T Consensus 428 s~K~~~~~p~~~----~~~~~~~G~~v~g~V~~v~~~G~fV~l~~-~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V~ 502 (516)
T TIGR00717 428 GVKQLTENPWEK----FAAKYKVGSVVKGKVTEIKDFGAFVELPG-GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVV 502 (516)
T ss_pred eeccccCCchhh----hhhccCcceEEEEEEEEEecceEEEEcCC-CeEEEEEHHHcCccccccccccCCCCCEEEEEEE
Confidence 999988777633 24678999999999999999999999986 8999999999999999999999999999999999
Q ss_pred EEecCCCeeEEeec
Q 000242 1392 KVDKEKRRISLGMK 1405 (1801)
Q Consensus 1392 ~id~e~~ri~lslK 1405 (1801)
++|.+++||+||+|
T Consensus 503 ~id~~~~~i~ls~k 516 (516)
T TIGR00717 503 DIDKKNRKVSLSVK 516 (516)
T ss_pred EEeCCCCEEEEEEC
Confidence 99999999999987
No 11
>PRK13806 rpsA 30S ribosomal protein S1; Provisional
Probab=100.00 E-value=1e-49 Score=499.93 Aligned_cols=418 Identities=19% Similarity=0.291 Sum_probs=355.9
Q ss_pred CCCCcceEEEEEEEEeCCeEEEEeCCCeeEEEEeeeecCCcCccccCcCcCCCCCCEEEEEEEeeeecCCCCCcceEEEE
Q 000242 926 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1005 (1801)
Q Consensus 926 ~~~~G~~v~~~V~~v~~~~~~v~l~~~~~G~v~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~~~~~~~~elS 1005 (1801)
.+.+|++|+|+|+++.+++++|+++.+..|+|+.+|+.+.+.+ ..+++|++++|+|++++ ...+.||
T Consensus 31 ~~~~G~~v~G~V~~v~~~~v~Vdig~k~eg~ip~~e~~~~~~~------~~~~~G~~i~~~Vi~~~-------~~~~~lS 97 (491)
T PRK13806 31 ELRVGDKITGTVIAITEDSVFVDTGSKVDGVVDRAELLDADGE------LTVAVGDEVELYVVSVN-------GQEIRLS 97 (491)
T ss_pred cCCCCCEEEEEEEEEECCEEEEEECCCcEEEEEHHHhcCcccc------ccccCCCEEEEEEEEEc-------CCEEEEE
Confidence 4889999999999999999999999999999999999754321 35799999999999985 1248888
Q ss_pred eccCCccccccCCcccccccccCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhhhccccCCCCcEEEEE
Q 000242 1006 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1085 (1801)
Q Consensus 1006 ~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~~~~~~~~vG~~v~~~ 1085 (1801)
.+... ... ...+.++ ++.|+.++|+|.++.++|++|++. +++|++|.+++++.. ..++.. + +|+.++|+
T Consensus 98 ~~~~~-~~~----~~~l~~~-~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~--~~~~~~-~-vG~~i~~~ 166 (491)
T PRK13806 98 KALSG-QGG----AAMLEEA-YENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRY--VEDPES-Y-VGQTFQFL 166 (491)
T ss_pred hHHhh-hhh----HHHHHHH-HhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhcccc--CCChHH-c-CCCeEEEE
Confidence 66421 111 1123332 789999999999999999999997 799999999988753 233333 3 99999999
Q ss_pred EEEEeCCCcEEEEEecccccCc-CCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCceEEEEecccccccc
Q 000242 1086 VLSINKEKKLLRLVLRPFQDGI-SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1164 (1801)
Q Consensus 1086 V~~~~~~~~~~~Ls~~~~~~~~-~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~G~v~~sel~d~~ 1164 (1801)
|+.+|.+++++.||++...... ...|.....+ +++|+++.|+|+++.++ |+||++++++.|++|++|+++++
T Consensus 167 V~~id~~~~~v~lSrk~~~~~~~~~~~~~~~~~-----l~~G~iv~G~V~~v~~~--G~fV~l~~gv~g~v~~sels~~~ 239 (491)
T PRK13806 167 ITRVEENGRNIVVSRRALLEREQKEALEAFMET-----VKEGDVVEGTVTRLAPF--GAFVELAPGVEGMVHISELSWSR 239 (491)
T ss_pred EEEEECCCCeEEEEeehhhhhhhHHHHHHHHhh-----CCCCCEEEEEEEEEeCC--eEEEEcCCCcEEEEEHHHCCCcc
Confidence 9999999999999998764322 1333332333 45999999999999998 99999998999999999999988
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCC-cceEEEeecccccCCCCCCCCCCCCCCCCCcccccccccCC
Q 000242 1165 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG-TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1243 (1801)
Q Consensus 1165 ~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~id~~~~~-~~~l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1243 (1801)
..+ |...|++|+.|+|+|+++|.+.++ .+++.||+|+.. .+ ++.....+++
T Consensus 240 ~~~-----------~~~~~~vGd~i~vkVl~id~~~~~~~~ri~lS~K~~~-----~~------------p~~~~~~~~~ 291 (491)
T PRK13806 240 VQK-----------ADEAVSVGDTVRVKVLGIERAKKGKGLRISLSIKQAG-----GD------------PWDTVGDRLK 291 (491)
T ss_pred ccC-----------hhHhcCCCCEEEEEEEEEecccCCcceEEEEEehhhh-----cc------------cchhhhccCC
Confidence 776 778899999999999999975211 157999999885 22 3444556899
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCC-cccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccc
Q 000242 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1322 (1801)
Q Consensus 1244 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd-~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~ 1322 (1801)
+|+++.|+|++++++|+||+++++++|++|+++++| .++.+|.+.|++||.|+++|+++|+++++|.||+|+...+||.
T Consensus 292 ~G~~v~G~V~~v~~~G~fV~l~~gv~Glvh~sels~~~~~~~~~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~ 371 (491)
T PRK13806 292 AGDKVTGKVVRLAPFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWA 371 (491)
T ss_pred CCCEEEEEEEEEeCceEEEEeCCCcEEEEEHHHcCcccccCCHHHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhH
Confidence 999999999999999999999999999999999998 4678899999999999999999999999999999999888875
Q ss_pred cccccccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEE
Q 000242 1323 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402 (1801)
Q Consensus 1323 ~~~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~l 1402 (1801)
.. ..++++|++|.|+|+++++||+||++.+ +++||||+|++++.+..++.+.|++||.|+|+|+++|++++||+|
T Consensus 372 ~~----~~~~~vG~~v~G~V~~i~~~G~FV~l~~-gv~Gli~~se~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~L 446 (491)
T PRK13806 372 DV----AERFAPGTTVTGTVEKRAQFGLFVNLAP-GVTGLLPASVISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISL 446 (491)
T ss_pred Hh----hhhCCCCCEEEEEEEEEecCceEEEcCC-CcEEEEEHHHcCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEE
Confidence 43 5689999999999999999999999987 899999999999999988999999999999999999999999999
Q ss_pred eeccc
Q 000242 1403 GMKSS 1407 (1801)
Q Consensus 1403 slK~~ 1407 (1801)
|+|..
T Consensus 447 s~~~~ 451 (491)
T PRK13806 447 APAGA 451 (491)
T ss_pred Eeehh
Confidence 99963
No 12
>PRK13806 rpsA 30S ribosomal protein S1; Provisional
Probab=100.00 E-value=9.4e-48 Score=482.20 Aligned_cols=411 Identities=20% Similarity=0.287 Sum_probs=353.6
Q ss_pred CCCCCCeEEeeEEEEEeCCceEEEEeCCCCCceeeEEeecccchHHHHhhhccccCCCEEEEEEEEEeecCCeEEEEeec
Q 000242 270 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 349 (1801)
Q Consensus 270 ~~~~G~iv~~~~V~~v~~~~G~~v~~~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~~~~~~~s~k~ 349 (1801)
.+.+|++++ ++|++++.+ |++|+++.+ ..||+|.+++.+... ...+++|+++.|+|++++. +.+.+|.+.
T Consensus 31 ~~~~G~~v~-G~V~~v~~~-~v~Vdig~k---~eg~ip~~e~~~~~~---~~~~~~G~~i~~~Vi~~~~--~~~~lS~~~ 100 (491)
T PRK13806 31 ELRVGDKIT-GTVIAITED-SVFVDTGSK---VDGVVDRAELLDADG---ELTVAVGDEVELYVVSVNG--QEIRLSKAL 100 (491)
T ss_pred cCCCCCEEE-EEEEEEECC-EEEEEECCC---cEEEEEHHHhcCccc---cccccCCCEEEEEEEEEcC--CEEEEEhHH
Confidence 488999998 789999998 999999854 389999998764211 1248999999999999874 457778553
Q ss_pred cccccccccccCCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eCCeE
Q 000242 350 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 427 (1801)
Q Consensus 350 ~~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~~~~~~~vG~~v~~rVl~v--~~~~i 427 (1801)
.....+....+.+.+|++|+|+|+++.++|++|++. |+.||+|.+|+++....+|+. | +|++++|+|+.+ +++++
T Consensus 101 ~~~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~~~~~~~-~-vG~~i~~~V~~id~~~~~v 177 (491)
T PRK13806 101 SGQGGAAMLEEAYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRYVEDPES-Y-VGQTFQFLITRVEENGRNI 177 (491)
T ss_pred hhhhhHHHHHHHHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhccccCCChHH-c-CCCeEEEEEEEEECCCCeE
Confidence 322233344677899999999999999999999997 899999999999876677764 3 999999999999 45799
Q ss_pred EEEEccccccchhhhhhh-hhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCCCCCCCCCCccCCCEEEEEE
Q 000242 428 TVTHKKTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 506 (1801)
Q Consensus 428 ~ls~k~~l~~~~~~~~~~-~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rV 506 (1801)
.||+|..+.......|.. +..+++|+++.|+|+++.++|+||++++++.||+|.++++|.+..+|.+.|++||.++|+|
T Consensus 178 ~lSrk~~~~~~~~~~~~~~~~~l~~G~iv~G~V~~v~~~G~fV~l~~gv~g~v~~sels~~~~~~~~~~~~vGd~i~vkV 257 (491)
T PRK13806 178 VVSRRALLEREQKEALEAFMETVKEGDVVEGTVTRLAPFGAFVELAPGVEGMVHISELSWSRVQKADEAVSVGDTVRVKV 257 (491)
T ss_pred EEEeehhhhhhhHHHHHHHHhhCCCCCEEEEEEEEEeCCeEEEEcCCCcEEEEEHHHCCCccccChhHhcCCCCEEEEEE
Confidence 999998776544445544 4457899999999999999999999988999999999999988889999999999999999
Q ss_pred EEEeCCC----CeEEEEEeeCCC-CCcc-cccccCCCeEEEEEEEEecCcEEEEEEEcCceeEEEecccccCcccccccc
Q 000242 507 MSSIPAS----RRINLSFMMKPT-RVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 580 (1801)
Q Consensus 507 l~~d~~~----~~l~lS~k~~~~-~~~~-~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~ 580 (1801)
+++|+++ +|+.||+|+... +|.. ...+++|++++|+|++++++|+||++ .++++|++|.++|++... ....
T Consensus 258 l~id~~~~~~~~ri~lS~K~~~~~p~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l--~~gv~Glvh~sels~~~~-~~~~ 334 (491)
T PRK13806 258 LGIERAKKGKGLRISLSIKQAGGDPWDTVGDRLKAGDKVTGKVVRLAPFGAFVEI--LPGIEGLVHVSEMSWTRR-VNKP 334 (491)
T ss_pred EEEecccCCcceEEEEEehhhhcccchhhhccCCCCCEEEEEEEEEeCceEEEEe--CCCcEEEEEHHHcCcccc-cCCH
Confidence 9999976 489999987633 5543 45789999999999999999999999 778999999999997321 1223
Q ss_pred cccccCCCeEe-eEEEeecCCCeEEEeccchhhchhhcCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCc
Q 000242 581 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 659 (1801)
Q Consensus 581 ~~~~k~G~~i~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~ 659 (1801)
.+.+++||.++ +++.+|.+++++.||+|+...++|.... .++++|+.++|+|+++++||+||++.+|+.||||+|+
T Consensus 335 ~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~~~~---~~~~vG~~v~G~V~~i~~~G~FV~l~~gv~Gli~~se 411 (491)
T PRK13806 335 EDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWADVA---ERFAPGTTVTGTVEKRAQFGLFVNLAPGVTGLLPASV 411 (491)
T ss_pred HHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhHHhh---hhCCCCCEEEEEEEEEecCceEEEcCCCcEEEEEHHH
Confidence 56899999999 8999999999999999999999998654 4688999999999999999999999999999999999
Q ss_pred cCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000242 660 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699 (1801)
Q Consensus 660 ~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~ 699 (1801)
+++.+..++.+.|++||+|+|+|+++|++++|+.||++..
T Consensus 412 ~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~Ls~~~~ 451 (491)
T PRK13806 412 ISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLAPAGA 451 (491)
T ss_pred cCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEEEeehh
Confidence 9999999999999999999999999999999999999965
No 13
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=1.1e-42 Score=426.91 Aligned_cols=333 Identities=27% Similarity=0.379 Sum_probs=290.3
Q ss_pred cCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhhhccccCCCCcEEEEEEEEEeCCCcEEEEEecccccC
Q 000242 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106 (1801)
Q Consensus 1027 ~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~~~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~ 1106 (1801)
+++|++|+|+|.++.++++||++++.++|+||..++++.. ..+|.+.|++|+.|+|+|+++++.++++.||++....
T Consensus 33 ~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~--~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~- 109 (486)
T PRK07899 33 FNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKH--DVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY- 109 (486)
T ss_pred CCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccc--cCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc-
Confidence 6999999999999999999999999999999999999864 3467778999999999999999999999999998642
Q ss_pred cCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCC
Q 000242 1107 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186 (1801)
Q Consensus 1107 ~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G 1186 (1801)
..+|....+.+. .|++++|+|+++.++ |++|++ |++|++|.+++++.+..+ +. . .+|
T Consensus 110 -~~~w~~ie~~~e-----~g~~V~G~V~~v~k~--G~~Vdl--Gi~gflP~Sel~~~~~~~-----------~~-~-~vG 166 (486)
T PRK07899 110 -ERAWGTIEKIKE-----KDGVVTGTVIEVVKG--GLILDI--GLRGFLPASLVEMRRVRD-----------LQ-P-YIG 166 (486)
T ss_pred -cchHHHHHHHhc-----CCCEEEEEEEEEECC--eEEEEE--CCEEEEEhhHhcccccCC-----------hh-h-cCC
Confidence 244543333333 899999999999998 999999 589999999997765444 32 2 389
Q ss_pred CEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEeeceEEEEeCC
Q 000242 1187 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1266 (1801)
Q Consensus 1187 ~~v~~~Vl~id~~~~~~~~l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~ 1266 (1801)
+.|+|+|+++|++ ++++.||+|... .... ..++...+.++++|+++.|+|++++++|+||+|+
T Consensus 167 q~V~vkVleid~~---~~~ivLSrr~~l-----~~~~--------~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdlg- 229 (486)
T PRK07899 167 QEIEAKIIELDKN---RNNVVLSRRAWL-----EQTQ--------SEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLG- 229 (486)
T ss_pred CEEEEEEEEEECC---CCEEEEEhHHHH-----Hhhh--------HHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-
Confidence 9999999999976 679999999754 0000 1123344578999999999999999999999997
Q ss_pred CcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEEe
Q 000242 1267 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1346 (1801)
Q Consensus 1267 ~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~ 1346 (1801)
+++||||+++|+|.++.+|.+.|++||.|+|+|+++|++++||.||+|+...+||.. ....+++|+++.|+|+++.
T Consensus 230 gv~Glv~~Sels~~~v~~~~~~~kvGd~V~vkVl~iD~e~~rI~LSlK~~~~dPw~~----~~~~~~vG~vv~G~V~~I~ 305 (486)
T PRK07899 230 GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ----FARTHAIGQIVPGKVTKLV 305 (486)
T ss_pred CEEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeeccccchhh----hHHhcCCCCEEEEEEEEEe
Confidence 799999999999999999999999999999999999999999999999998888743 2446889999999999999
Q ss_pred eceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1347 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1347 ~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
+||+||+|.+ ++.||||+|++++.++.++.+.|++||.|+++|+++|++++||+||+|+.
T Consensus 306 ~fGvFVeL~~-gieGLvh~SeLs~~~v~~~~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~ 365 (486)
T PRK07899 306 PFGAFVRVEE-GIEGLVHISELAERHVEVPEQVVQVGDEVFVKVIDIDLERRRISLSLKQA 365 (486)
T ss_pred ccEEEEEeCC-CcEEEEEHHHcCcccccCccceeCCCCEEEEEEEEEECCCCEEEEEEEEc
Confidence 9999999986 89999999999999988899999999999999999999999999999985
No 14
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=6.9e-42 Score=419.82 Aligned_cols=328 Identities=21% Similarity=0.256 Sum_probs=290.5
Q ss_pred ccCCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eCCeEEEEEccccc
Q 000242 359 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 436 (1801)
Q Consensus 359 ~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~~~~~~~vG~~v~~rVl~v--~~~~i~ls~k~~l~ 436 (1801)
+..+++|++|+|+|++++++|++|+++.+++|+||..|+++.+..+|++.|++|++|+|+|+.+ ..+++.||+|+...
T Consensus 30 ~~~~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~ 109 (486)
T PRK07899 30 IKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY 109 (486)
T ss_pred HhcCCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccccCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc
Confidence 5669999999999999999999999988999999999999988889999999999999999999 45789999998754
Q ss_pred cchhhhhhhhhhc-CCCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCCCCCCCCCCccCCCEEEEEEEEEeCCCCe
Q 000242 437 KSKLAILSSYAEA-TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 515 (1801)
Q Consensus 437 ~~~~~~~~~~~~~-~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~ 515 (1801)
. ..|..++++ +.|+++.|+|+++.++|+||++ |++||+|.|++++.++.++.. .+||+|+|+|+++|+++++
T Consensus 110 ~---~~w~~ie~~~e~g~~V~G~V~~v~k~G~~Vdl--Gi~gflP~Sel~~~~~~~~~~--~vGq~V~vkVleid~~~~~ 182 (486)
T PRK07899 110 E---RAWGTIEKIKEKDGVVTGTVIEVVKGGLILDI--GLRGFLPASLVEMRRVRDLQP--YIGQEIEAKIIELDKNRNN 182 (486)
T ss_pred c---chHHHHHHHhcCCCEEEEEEEEEECCeEEEEE--CCEEEEEhhHhcccccCChhh--cCCCEEEEEEEEEECCCCE
Confidence 4 357777776 4799999999999999999999 699999999999876666654 3999999999999999999
Q ss_pred EEEEEeeCCC-----CC-cccccccCCCeEEEEEEEEecCcEEEEEEEcCceeEEEecccccCcccccccccccccCCCe
Q 000242 516 INLSFMMKPT-----RV-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 589 (1801)
Q Consensus 516 l~lS~k~~~~-----~~-~~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~ 589 (1801)
+.||+|.... ++ .....+++|++++|+|++++++|+||++ + +++|+||.++|+|.... ...+.+++||+
T Consensus 183 ivLSrr~~l~~~~~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdl--g-gv~Glv~~Sels~~~v~--~~~~~~kvGd~ 257 (486)
T PRK07899 183 VVLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDL--G-GVDGLVHVSELSWKHID--HPSEVVEVGQE 257 (486)
T ss_pred EEEEhHHHHHhhhHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEE--C-CEEEEEEHHHCCCcccC--CHHHhcCCCCE
Confidence 9999984311 11 1235688999999999999999999999 4 69999999999985432 23467899999
Q ss_pred Ee-eEEEeecCCCeEEEeccchhhchhhcCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCc
Q 000242 590 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 668 (1801)
Q Consensus 590 i~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~ 668 (1801)
|+ +++.+|.+++++.||+|+...++|.... ..+++|+++.|+|++++++|+||++.+|+.||+|++++++.++.++
T Consensus 258 V~vkVl~iD~e~~rI~LSlK~~~~dPw~~~~---~~~~vG~vv~G~V~~I~~fGvFVeL~~gieGLvh~SeLs~~~v~~~ 334 (486)
T PRK07899 258 VTVEVLDVDMDRERVSLSLKATQEDPWQQFA---RTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVP 334 (486)
T ss_pred EEEEEEEEECCCCEEEEEEeeccccchhhhH---HhcCCCCEEEEEEEEEeccEEEEEeCCCcEEEEEHHHcCcccccCc
Confidence 99 8899999999999999999999886533 3367899999999999999999999999999999999999988999
Q ss_pred ccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000242 669 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701 (1801)
Q Consensus 669 ~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~ 701 (1801)
.+.|++||+|+|+|+++|++++|+.||+|+...
T Consensus 335 ~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~~~ 367 (486)
T PRK07899 335 EQVVQVGDEVFVKVIDIDLERRRISLSLKQANE 367 (486)
T ss_pred cceeCCCCEEEEEEEEEECCCCEEEEEEEEccc
Confidence 999999999999999999999999999998865
No 15
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=1.1e-39 Score=403.60 Aligned_cols=334 Identities=24% Similarity=0.303 Sum_probs=292.6
Q ss_pred cccccccCCCCCCEEEEEEEEEecCceEEEe-CCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eCCeEEEE
Q 000242 354 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVT 430 (1801)
Q Consensus 354 ~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l-~~~v~g~vp~~hls~~~~~~~~~~~~vG~~v~~rVl~v--~~~~i~ls 430 (1801)
+...++.++++|++|+|+|++++++|++|++ +++++|+||..|+++....+|...|++|++|+|+|+.+ +++++.||
T Consensus 7 ~~~~~~~~~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~~~~~~~~~~vGd~v~~~V~~v~~~~~~i~lS 86 (390)
T PRK06676 7 ESLNSVKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDELEVYVLKVEDGEGNLLLS 86 (390)
T ss_pred HHhhhhhcccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhccccccCcccccCCCCEEEEEEEEEECCCCCEEEE
Confidence 3445788999999999999999999999999 77999999999999988889999999999999999999 45679999
Q ss_pred Eccccccchhhhhhhhhh-cCCCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCCCCCCCCCCccCCCEEEEEEEEE
Q 000242 431 HKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 509 (1801)
Q Consensus 431 ~k~~l~~~~~~~~~~~~~-~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~ 509 (1801)
+|+.... +.|..+.+ .++|++++|+|+++.++|+||++ +|+.||+|.+++++....++.. + +||+++|+|+++
T Consensus 87 ~k~~~~~---~~~~~~~~~~~~G~~v~g~V~~v~~~G~~V~~-~G~~gflp~~el~~~~~~~~~~-~-vG~~v~~~Vl~~ 160 (390)
T PRK06676 87 KRRLEAE---KAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDV-EGVRGFIPASLISTRFVEDFSD-F-KGKTLEVKIIEL 160 (390)
T ss_pred HHHhhhh---hhHHHHHHhccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcCCccCCChHH-c-CCCEEEEEEEEE
Confidence 9976432 35666544 47899999999999999999999 6889999999999876666654 3 999999999999
Q ss_pred eCCCCeEEEEEeeCCCC-----C-cccccccCCCeEEEEEEEEecCcEEEEEEEcCceeEEEecccccCccccccccccc
Q 000242 510 IPASRRINLSFMMKPTR-----V-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 583 (1801)
Q Consensus 510 d~~~~~l~lS~k~~~~~-----~-~~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~ 583 (1801)
|++++++.||++..... + .....+++|++++|+|+++.++|++|.+ ++++|+||.+++++... ....+.
T Consensus 161 d~~~~~i~lS~k~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l---~~v~g~v~~sels~~~~--~~~~~~ 235 (390)
T PRK06676 161 DPEKNRVILSRRAVVEEERAAKKEELLSSLKEGDVVEGTVARLTDFGAFVDI---GGVDGLVHISELSHERV--EKPSEV 235 (390)
T ss_pred ECCCCEEEEEeHHHhhhhhhhHHHHHHhhCCCCCEEEEEEEEEecceEEEEe---CCeEEEEEHHHcCcccc--CCHHHh
Confidence 99999999999864221 1 1235678999999999999999999999 46999999999998432 233567
Q ss_pred ccCCCeEe-eEEEeecCCCeEEEeccchhhchhhcCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCc
Q 000242 584 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 662 (1801)
Q Consensus 584 ~k~G~~i~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~ 662 (1801)
+++||.|+ +++.+|.+.+++.||+|+.+.++|... ++++++|+.+.|+|++++++|+||++.+++.||+|.+++++
T Consensus 236 ~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~~---~~~~~~G~~v~g~V~~i~~~G~fV~l~~gi~Glv~~se~~~ 312 (390)
T PRK06676 236 VSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEGV---EEKLPEGDVIEGTVKRLTDFGAFVEVLPGVEGLVHISQISH 312 (390)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEEEEeecccCccccc---hhhhcCCcEEEEEEEEEeCceEEEEECCCCeEEEEhHHcCc
Confidence 89999999 788999999999999999998888654 35688999999999999999999999999999999999999
Q ss_pred ccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000242 663 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701 (1801)
Q Consensus 663 ~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~ 701 (1801)
.+..++.+.|++||+|+|+|+++|++++|+.||+|+...
T Consensus 313 ~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 313 KHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred cccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 888889999999999999999999999999999998765
No 16
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=5e-39 Score=397.94 Aligned_cols=336 Identities=26% Similarity=0.429 Sum_probs=291.7
Q ss_pred cCCCCEEEEEEEEEeCCEEEEEe-CCCeEEEEEccccCCCCchhhhccccCCCCcEEEEEEEEEeCCCcEEEEEeccccc
Q 000242 1027 VSIGQRVTGYVYKVDNEWALLTI-SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1105 (1801)
Q Consensus 1027 ~~~G~~v~g~V~~v~~~~~~v~l-~~~~~g~l~~~~~~~~~~~~~~~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~ 1105 (1801)
+++|++++|+|.++.+++++|++ +++..|++|..++++.. ..++...|++|+.++|+|+.++.+++++.||++....
T Consensus 15 ~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~--~~~~~~~~~vGd~v~~~V~~v~~~~~~i~lS~k~~~~ 92 (390)
T PRK06676 15 VEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDH--IEDINDVVKVGDELEVYVLKVEDGEGNLLLSKRRLEA 92 (390)
T ss_pred ccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhcccc--ccCcccccCCCCEEEEEEEEEECCCCCEEEEHHHhhh
Confidence 59999999999999999999999 88999999999998763 4567778999999999999999999999999997632
Q ss_pred CcCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCC
Q 000242 1106 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1185 (1801)
Q Consensus 1106 ~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~~~~ 1185 (1801)
...|......+ ++|+++.|+|+++.++ |++|+++ |..|++|++|+++.+..+ |.. + +
T Consensus 93 --~~~~~~~~~~~-----~~G~~v~g~V~~v~~~--G~~V~~~-G~~gflp~~el~~~~~~~-----------~~~-~-v 149 (390)
T PRK06676 93 --EKAWDKLEEKF-----EEGEVVEVKVTEVVKG--GLVVDVE-GVRGFIPASLISTRFVED-----------FSD-F-K 149 (390)
T ss_pred --hhhHHHHHHhc-----cCCCEEEEEEEEEECC--eEEEEEC-CEEEEEEHHHcCCccCCC-----------hHH-c-C
Confidence 23454333333 4999999999999998 9999995 679999999998877655 433 3 8
Q ss_pred CCEEEEEEEEeecCCCCcceEEEeecccccCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEeeceEEEEeC
Q 000242 1186 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265 (1801)
Q Consensus 1186 G~~v~~~Vl~id~~~~~~~~l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~ 1265 (1801)
|+.++|+|+++|++ ++++.||+|... ... ...++...+.++++|+++.|+|++++++|+||.++
T Consensus 150 G~~v~~~Vl~~d~~---~~~i~lS~k~~~-----~~~--------~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~ 213 (390)
T PRK06676 150 GKTLEVKIIELDPE---KNRVILSRRAVV-----EEE--------RAAKKEELLSSLKEGDVVEGTVARLTDFGAFVDIG 213 (390)
T ss_pred CCEEEEEEEEEECC---CCEEEEEeHHHh-----hhh--------hhhHHHHHHhhCCCCCEEEEEEEEEecceEEEEeC
Confidence 99999999999976 679999999864 100 01122334567899999999999999999999996
Q ss_pred CCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEE
Q 000242 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1345 (1801)
Q Consensus 1266 ~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v 1345 (1801)
+++|++|+++++|.++.+|.+.|++|+.|+|+|+++|++++++.||+|+....||.. ...++++|+++.|+|+++
T Consensus 214 -~v~g~v~~sels~~~~~~~~~~~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~----~~~~~~~G~~v~g~V~~i 288 (390)
T PRK06676 214 -GVDGLVHISELSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEG----VEEKLPEGDVIEGTVKRL 288 (390)
T ss_pred -CeEEEEEHHHcCccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEeecccCcccc----chhhhcCCcEEEEEEEEE
Confidence 799999999999999999999999999999999999999999999999988777643 256899999999999999
Q ss_pred eeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000242 1346 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409 (1801)
Q Consensus 1346 ~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~~~ 1409 (1801)
.++|+||++.+ ++.||+|+|++++.++.++.+.|++||.|+|+|+++|++++||.||+|+...
T Consensus 289 ~~~G~fV~l~~-gi~Glv~~se~~~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 289 TDFGAFVEVLP-GVEGLVHISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred eCceEEEEECC-CCeEEEEhHHcCccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 99999999986 8999999999999988888899999999999999999999999999998644
No 17
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=5.9e-37 Score=397.91 Aligned_cols=335 Identities=24% Similarity=0.412 Sum_probs=292.9
Q ss_pred cCCCCEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhhhccccCCCCcEEEEEEEEEeCCCcEEEEEecccccC
Q 000242 1027 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1106 (1801)
Q Consensus 1027 ~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~~~~~~~~vG~~v~~~V~~~~~~~~~~~Ls~~~~~~~ 1106 (1801)
+++|+.++|+|.++.+++++|+++....|++|..+++++. ..++.+.|++|+.++|+|++++.+++++.||++.+..
T Consensus 300 l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~--~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~~~~- 376 (647)
T PRK00087 300 IRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDE--ISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKEADR- 376 (647)
T ss_pred ccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccc--cCChhhccCCCCEEEEEEEEEECCCCcEEEEeehhcc-
Confidence 6999999999999999999999999999999999998763 4567788999999999999999989999999998742
Q ss_pred cCCcccccccccccccccCCCEEEEEEEEEeeCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCC
Q 000242 1107 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1186 (1801)
Q Consensus 1107 ~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G 1186 (1801)
...|....+. +++|+++.|+|+++.++ |++|+++ +.+|++|.+|+++.+..+ |.. + +|
T Consensus 377 -~~~~~~l~~~-----~~~G~iv~g~V~~v~~~--G~~V~lg-gi~gfiP~sel~~~~~~d-----------~~~-~-vG 434 (647)
T PRK00087 377 -EKAWKELEEA-----FENGEPVKGKVKEVVKG--GLLVDYG-GVRAFLPASHVELGYVED-----------LSE-Y-KG 434 (647)
T ss_pred -hhHHHHHHHH-----hhCCCEEEEEEEEEECC--eEEEEEC-CEEEEEEHHHhCccccCC-----------HHH-h-CC
Confidence 2344433333 34999999999999988 9999998 499999999998887665 432 3 89
Q ss_pred CEEEEEEEEeecCCCCcce-EEEeecccccCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEeeceEEEEeC
Q 000242 1187 QFVKCKVLEISRTVRGTFH-VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1265 (1801)
Q Consensus 1187 ~~v~~~Vl~id~~~~~~~~-l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~ 1265 (1801)
+.++|+|+++|++ +++ +.+|+|...... ...+....+.++++|+++.|+|+++.++|+||++
T Consensus 435 ~~v~v~Vl~vd~e---~~~~l~lS~k~~~~~~-------------~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l- 497 (647)
T PRK00087 435 QELEVKIIEFNRK---RRKKVVLSRKAILEEE-------------KEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI- 497 (647)
T ss_pred CEEEEEEEEEEcC---CCcEEEEEeHHHhhhh-------------hhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE-
Confidence 9999999999986 456 999998874000 0122344556789999999999999999999999
Q ss_pred CCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEE
Q 000242 1266 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1345 (1801)
Q Consensus 1266 ~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v 1345 (1801)
++++|++|+++++|.++.+|.+.|++|+.|+++|+++|++++++.||+|+...+||.. ...++++|+++.|+|+++
T Consensus 498 ~gv~Gll~~sels~~~~~~~~~~~~vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~----~~~~~~~G~~v~g~V~~i 573 (647)
T PRK00087 498 GGVDGLLHVSEISWGRVEKPSDVLKVGDEIKVYILDIDKENKKLSLSLKKLLPDPWEN----VEEKYPVGSIVLGKVVRI 573 (647)
T ss_pred CCEEEEEEHHHcCccccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEeeccccChhhh----hhhhccCCeEEEEEEEEE
Confidence 6999999999999999999999999999999999999999999999999988877643 246789999999999999
Q ss_pred eeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecccc
Q 000242 1346 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1408 (1801)
Q Consensus 1346 ~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~~ 1408 (1801)
.+||+||+|.+ ++.||+|+|++++.++.++.+.|++||.|+++|+++|++++||.||+|...
T Consensus 574 ~~~G~fV~l~~-~i~Gli~~sel~~~~~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~ 635 (647)
T PRK00087 574 APFGAFVELEP-GVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVE 635 (647)
T ss_pred ECCeEEEEECC-CCEEEEEhhhcCccccCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeecc
Confidence 99999999986 899999999999999999999999999999999999999999999999853
No 18
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=2.2e-36 Score=392.61 Aligned_cols=332 Identities=23% Similarity=0.283 Sum_probs=291.7
Q ss_pred cccccCCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE--eCCeEEEEEcc
Q 000242 356 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 433 (1801)
Q Consensus 356 ~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~~~~~~~vG~~v~~rVl~v--~~~~i~ls~k~ 433 (1801)
....+.+++|++|+|+|.+++++|++|+++++.+|++|..|+++....+|.+.|++|+.|+|+|+.+ ..+++.||+|+
T Consensus 294 ~~~~~~l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~ 373 (647)
T PRK00087 294 NELEKQIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDEISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKE 373 (647)
T ss_pred HHHHhhccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccccCChhhccCCCCEEEEEEEEEECCCCcEEEEeeh
Confidence 3457789999999999999999999999998899999999999988889999999999999999999 46799999998
Q ss_pred ccccchhhhhhhhhh-cCCCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCCCCCCCCCCccCCCEEEEEEEEEeCC
Q 000242 434 TLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 512 (1801)
Q Consensus 434 ~l~~~~~~~~~~~~~-~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~ 512 (1801)
..... .|..+.+ +++|+++.|+|+++.++|+||+++ +++||+|.+++++....++.. + +|++++|+|+++|++
T Consensus 374 ~~~~~---~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~lg-gi~gfiP~sel~~~~~~d~~~-~-vG~~v~v~Vl~vd~e 447 (647)
T PRK00087 374 ADREK---AWKELEEAFENGEPVKGKVKEVVKGGLLVDYG-GVRAFLPASHVELGYVEDLSE-Y-KGQELEVKIIEFNRK 447 (647)
T ss_pred hcchh---HHHHHHHHhhCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHhCccccCCHHH-h-CCCEEEEEEEEEEcC
Confidence 75542 3444443 478999999999999999999995 699999999998876666654 3 999999999999999
Q ss_pred CCe-EEEEEeeCCC-----C-CcccccccCCCeEEEEEEEEecCcEEEEEEEcCceeEEEecccccCccccccccccccc
Q 000242 513 SRR-INLSFMMKPT-----R-VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 585 (1801)
Q Consensus 513 ~~~-l~lS~k~~~~-----~-~~~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k 585 (1801)
+++ +.+|++.... + ....+.+++|+++.|+|.++.++|++|.+ ++++|++|.++++|.... ...+.|+
T Consensus 448 ~~~~l~lS~k~~~~~~~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l---~gv~Gll~~sels~~~~~--~~~~~~~ 522 (647)
T PRK00087 448 RRKKVVLSRKAILEEEKEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI---GGVDGLLHVSEISWGRVE--KPSDVLK 522 (647)
T ss_pred CCcEEEEEeHHHhhhhhhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE---CCEEEEEEHHHcCccccC--CHHHhcC
Confidence 998 9999986421 1 11234578999999999999999999999 579999999999985432 2356799
Q ss_pred CCCeEe-eEEEeecCCCeEEEeccchhhchhhcCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCccc
Q 000242 586 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 664 (1801)
Q Consensus 586 ~G~~i~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~ 664 (1801)
+||.++ +++.+|.+++++.||+|+.+.++|..+. +++++|+.+.|+|++++++|+||++.+++.||+|.+++++.+
T Consensus 523 vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~~~---~~~~~G~~v~g~V~~i~~~G~fV~l~~~i~Gli~~sel~~~~ 599 (647)
T PRK00087 523 VGDEIKVYILDIDKENKKLSLSLKKLLPDPWENVE---EKYPVGSIVLGKVVRIAPFGAFVELEPGVDGLVHISQISWKR 599 (647)
T ss_pred CCCEEEEEEEEEECCCCEEEEEeeccccChhhhhh---hhccCCeEEEEEEEEEECCeEEEEECCCCEEEEEhhhcCccc
Confidence 999999 7889999999999999999999987654 457899999999999999999999999999999999999999
Q ss_pred ccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000242 665 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701 (1801)
Q Consensus 665 ~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~ 701 (1801)
+.++.+.|++||.|+|+|+++|++++|+.||+|....
T Consensus 600 ~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~~ 636 (647)
T PRK00087 600 IDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVEE 636 (647)
T ss_pred cCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 9999999999999999999999999999999997654
No 19
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=5e-32 Score=319.55 Aligned_cols=240 Identities=23% Similarity=0.386 Sum_probs=212.8
Q ss_pred ccCCCEEEEEEEEEeeCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCCC
Q 000242 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1202 (1801)
Q Consensus 1123 l~~G~~v~g~V~~i~~~~~g~~V~l~~~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~id~~~~~ 1202 (1801)
+++|+++.|+|+++.++ |++|++|.+..|++|++|+++++..+ |...|++|+.++|+|++++.+
T Consensus 29 ~~~G~iv~G~V~~i~~~--g~~Vdig~k~~g~lp~sEis~~~~~~-----------~~~~~~~G~~v~~~Vi~~~~~--- 92 (318)
T PRK07400 29 FKPGDIVNGTVFSLEPR--GALIDIGAKTAAFMPIQEMSINRVEG-----------PEEVLQPNETREFFILSDENE--- 92 (318)
T ss_pred cCCCCEEEEEEEEEECC--EEEEEECCCeEEEEEHHHhccccccC-----------HHHccCCCCEEEEEEEEEeCC---
Confidence 56999999999999998 99999999999999999999988776 778899999999999999875
Q ss_pred cceEEEeecccccCCCCCCCCCCCCCCCCCcccccccccC-CCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcc
Q 000242 1203 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL-SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1281 (1801)
Q Consensus 1203 ~~~l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~ 1281 (1801)
++++.||+|+.. . ...|..+.++ +.|++|+|+|++++++|+||+++ |++||||++++||.+
T Consensus 93 ~~~i~lS~k~~~-----~------------~~~w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l~-Gv~gfip~s~ls~~~ 154 (318)
T PRK07400 93 DGQLTLSIRRIE-----Y------------MRAWERVRQLQKEDATVRSEVFATNRGGALVRIE-GLRGFIPGSHISTRK 154 (318)
T ss_pred CCeEEEehhhhh-----h------------hhHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCccC
Confidence 579999999874 0 1124444444 46999999999999999999996 999999999999865
Q ss_pred cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeE
Q 000242 1282 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1361 (1801)
Q Consensus 1282 ~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~g 1361 (1801)
.. +.+ +|+.+.|+|+++|++++++.||+|...... .+.++++|+++.|+|+++++||+||.+. ++.|
T Consensus 155 ~~---~~~-vG~~i~~kVl~id~~~~~i~lS~K~~~~~~-------~~~~~k~G~vv~G~V~~I~~~G~fV~i~--gv~G 221 (318)
T PRK07400 155 PK---EEL-VGEELPLKFLEVDEERNRLVLSHRRALVER-------KMNRLEVGEVVVGTVRGIKPYGAFIDIG--GVSG 221 (318)
T ss_pred Cc---ccc-CCCEEEEEEEEEEcccCEEEEEhhHhhhhh-------hhccCCCCCEEEEEEEEEECCeEEEEEC--CEEE
Confidence 43 333 999999999999999999999999766432 3678999999999999999999999995 7999
Q ss_pred EeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000242 1362 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409 (1801)
Q Consensus 1362 l~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~~~ 1409 (1801)
|+|+|++++.++.++.+.|++||.|+++|+++|.++++|.||+|....
T Consensus 222 llhisels~~~~~~~~~~~~vGd~VkvkVl~iD~e~~rI~LS~K~l~~ 269 (318)
T PRK07400 222 LLHISEISHEHIETPHSVFNVNDEMKVMIIDLDAERGRISLSTKQLEP 269 (318)
T ss_pred EEEHHHcccccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEecccc
Confidence 999999999999999999999999999999999999999999999654
No 20
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=99.97 E-value=1.4e-30 Score=307.23 Aligned_cols=237 Identities=22% Similarity=0.295 Sum_probs=213.1
Q ss_pred cCCCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCCCCCCCCCCccCCCEEEEEEEEEeCCCCeEEEEEeeCC--CC
Q 000242 449 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP--TR 526 (1801)
Q Consensus 449 ~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~--~~ 526 (1801)
+++|+++.|+|+++.++|+||+|+++..||+|.+++++..+.++.+.|++|++++|+|+++|++++++.||+|... .+
T Consensus 29 ~~~G~iv~G~V~~i~~~g~~Vdig~k~~g~lp~sEis~~~~~~~~~~~~~G~~v~~~Vi~~~~~~~~i~lS~k~~~~~~~ 108 (318)
T PRK07400 29 FKPGDIVNGTVFSLEPRGALIDIGAKTAAFMPIQEMSINRVEGPEEVLQPNETREFFILSDENEDGQLTLSIRRIEYMRA 108 (318)
T ss_pred cCCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhccccccCHHHccCCCCEEEEEEEEEeCCCCeEEEehhhhhhhhH
Confidence 7899999999999999999999988899999999999988888999999999999999999999999999999753 23
Q ss_pred Ccccc-cccCCCeEEEEEEEEecCcEEEEEEEcCceeEEEecccccCcccccccccccccCCCeEe-eEEEeecCCCeEE
Q 000242 527 VSEDD-LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLL 604 (1801)
Q Consensus 527 ~~~~~-~~~~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~i~-~vl~~d~~~~~i~ 604 (1801)
|.... ....|++|+|+|+.+.+.|++|.+ ++++||||.+|||+... .+. .+|++|+ +++.+|++++++.
T Consensus 109 w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l---~Gv~gfip~s~ls~~~~-----~~~-~vG~~i~~kVl~id~~~~~i~ 179 (318)
T PRK07400 109 WERVRQLQKEDATVRSEVFATNRGGALVRI---EGLRGFIPGSHISTRKP-----KEE-LVGEELPLKFLEVDEERNRLV 179 (318)
T ss_pred HHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHcCccCC-----ccc-cCCCEEEEEEEEEEcccCEEE
Confidence 44333 345699999999999999999999 58999999999998532 223 4999999 8999999999999
Q ss_pred EeccchhhchhhcCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEE
Q 000242 605 LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 684 (1801)
Q Consensus 605 ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~ 684 (1801)
||+|+.+.+. .+.++++|+++.|+|++|+++|+||++ +|+.||+|++++++.++.+|.+.|++||.|+|+|++
T Consensus 180 lS~K~~~~~~------~~~~~k~G~vv~G~V~~I~~~G~fV~i-~gv~Gllhisels~~~~~~~~~~~~vGd~VkvkVl~ 252 (318)
T PRK07400 180 LSHRRALVER------KMNRLEVGEVVVGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVFNVNDEMKVMIID 252 (318)
T ss_pred EEhhHhhhhh------hhccCCCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcccccccChhhccCCCCEEEEEEEE
Confidence 9999888643 356789999999999999999999999 689999999999999999999999999999999999
Q ss_pred eeCCCCeEEEeeccccc
Q 000242 685 VNSETGRITLSLKQSCC 701 (1801)
Q Consensus 685 vd~~~~ri~lSlk~~~~ 701 (1801)
+|.+++|+.||+|....
T Consensus 253 iD~e~~rI~LS~K~l~~ 269 (318)
T PRK07400 253 LDAERGRISLSTKQLEP 269 (318)
T ss_pred EeCCCCEEEEEEecccc
Confidence 99999999999999875
No 21
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.6e-23 Score=237.31 Aligned_cols=259 Identities=27% Similarity=0.439 Sum_probs=221.0
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHH--------------------
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-------------------- 1591 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l-------------------- 1591 (1801)
.+...++..|+|.+..+|+ ...|+.|+.|.+..|+..-||.+|++|++.+...++.|++
T Consensus 188 keieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i 266 (677)
T KOG1915|consen 188 KEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI 266 (677)
T ss_pred hHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788899999888886 5789999999999999999999999988755443222211
Q ss_pred --------------------------------------------------------HHHHHHHHHHHHcCCCCHHHHHHH
Q 000242 1592 --------------------------------------------------------NIWVAYFNLENEYGNPPEEAVVKV 1615 (1801)
Q Consensus 1592 --------------------------------------------------------~lW~a~l~le~~~g~~~~e~a~~v 1615 (1801)
..|..|+.|+...| +.+..+++
T Consensus 267 ykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g--~~~~Ire~ 344 (677)
T KOG1915|consen 267 YKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG--DKDRIRET 344 (677)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC--CHHHHHHH
Confidence 56999999988888 67999999
Q ss_pred HHHHHhcCCCH---H-------HHHHHHHHH-HHhCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHh-CHHHHH
Q 000242 1616 FQRALQYCDPK---K-------VHLALLGLY-ERTEQNKLADELLYKMIKKFK----HSCKVWLRRVQRLLKQ-QQEGVQ 1679 (1801)
Q Consensus 1616 ferAl~~~~~~---~-------v~~~l~~i~-~~~g~~~~A~~~~~~~~k~~~----~~~~~w~~~a~~~~~~-~~~~A~ 1679 (1801)
|+||+...|+- . +|+.|+-+. ....+.+.++++|+++++.-| ...++|+.||+|++++ +...||
T Consensus 345 yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~AR 424 (677)
T KOG1915|consen 345 YERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGAR 424 (677)
T ss_pred HHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHH
Confidence 99999999872 3 455555443 346788999999999999776 4589999999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 000242 1680 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759 (1801)
Q Consensus 1680 ~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~ 1759 (1801)
+++..|+-.+|+. +++..|+.++.+.++++++|.+|++-|...|.+...|+.|+.++..+|+.++||.+|+-|+++.
T Consensus 425 kiLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 425 KILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 9999999999998 6999999999999999999999999999999999999999999999999999999999999832
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000242 1760 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797 (1801)
Q Consensus 1760 ~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~ 1797 (1801)
. -+-+..+|+.|++||...|.++.++++|+|-++--+
T Consensus 502 ~-ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 502 A-LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred c-cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 1 223347899999999999999999999999987543
No 22
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.5e-22 Score=228.24 Aligned_cols=256 Identities=23% Similarity=0.398 Sum_probs=205.8
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1611 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~ 1611 (1801)
.+...|++.|||+|..+..+..+|+.|+.+.+....+..||.+++||+...|--. .+|..|+.++..+|| ++-
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-----qlWyKY~ymEE~LgN--i~g 159 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-----QLWYKYIYMEEMLGN--IAG 159 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-----HHHHHHHHHHHHhcc--cHH
Confidence 3467889999999999999999999999999999999999999999998888433 588888888888884 588
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCC
Q 000242 1612 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1690 (1801)
Q Consensus 1612 a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1690 (1801)
|+++|+|-+...|..+.|..++++..+....+.|+++|++.+--. ...+.|+.|+.|..++ +..-|+++|++|+..+.
T Consensus 160 aRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 160 ARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888888888888877555 4677788888888777 77777777777766654
Q ss_pred CCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------------------------HHhC
Q 000242 1691 RHK-HIKFISQTAILEFKNGVADRGRSMFEGI--------------------------------------------LSEY 1725 (1801)
Q Consensus 1691 ~~~-~~~~~~~~a~le~~~g~~e~Ar~lfe~a--------------------------------------------l~~~ 1725 (1801)
... .-.++..||.|+..+..+++||.+|.-| ++.+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 421 1245566666666666666666665544 6778
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHH-------H-HHHcCCHHHHHHHHHHHHHHH
Q 000242 1726 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE-------Y-EKSVGEEERIEYVKQKAMEYV 1796 (1801)
Q Consensus 1726 P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~-------~-E~~~G~~e~a~~v~~rAl~~v 1796 (1801)
|-+.|.|..|..++...|+.++.|.+||||+. +.||-.-+..|++|+- | |....|.+..+++|+.+++.+
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 88899999999999999999999999999999 7888887777777764 3 456789999999999999864
No 23
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=9.7e-20 Score=215.38 Aligned_cols=261 Identities=18% Similarity=0.248 Sum_probs=222.2
Q ss_pred HHHHHHHHHhccC-CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Q 000242 1521 EIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1599 (1801)
Q Consensus 1521 ~~~~~e~~~~~~~-~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~ 1599 (1801)
.|..+........ ..-++..|..+|...|..-.+|.+.+.|....|-.+...+++++|+...|..+ .+|+.|+.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae-----~lwlM~ak 592 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE-----ILWLMYAK 592 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch-----hHHHHHHH
Confidence 4544444444333 66678888888888999999999999998888999999999999998888655 58999998
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHH
Q 000242 1600 LENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1677 (1801)
Q Consensus 1600 le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~ 1677 (1801)
.....| +...|+.++.+|.+.+|. ..+|++-..+...+.++++|+.+|.++...- ....+|+.++.++.-+ +.++
T Consensus 593 e~w~ag--dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s-gTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAG--DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS-GTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcC--CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC-CcchhhHHHhHHHHHhhhHHH
Confidence 888888 678889999999998886 4899999999999999999999998888754 5778899999988888 8999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1678 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1678 A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
|+++++++|+.+|... ++|+..+|++.++++.+.||..|-..++.+|.+..+|..++.++.+.|.+-+||.+|+|+.-
T Consensus 670 A~rllEe~lk~fp~f~--Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFH--KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHhCCchH--HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999999999998874 89999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1758 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1758 ~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
-+|++. .||..-+.||.+.|+.+.|+.+..+|++
T Consensus 748 --kNPk~~-~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 748 --KNPKNA-LLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred --cCCCcc-hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567888 7899999999999999999999988887
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=7.4e-19 Score=208.02 Aligned_cols=252 Identities=23% Similarity=0.328 Sum_probs=209.0
Q ss_pred HhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000242 1529 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1608 (1801)
Q Consensus 1529 ~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~ 1608 (1801)
-..++.|.++..+.+++..+|+|..+|+.-..++..+.++++||.+|.+|-...+. + .+|+.+++|+.-++ .
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-e-----Rv~mKs~~~er~ld--~ 666 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-E-----RVWMKSANLERYLD--N 666 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-c-----hhhHHHhHHHHHhh--h
Confidence 34677888888888888888888888888888888888888888888888754442 2 48888888888888 4
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Q 000242 1609 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1686 (1801)
Q Consensus 1609 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ral 1686 (1801)
.++|.+++++|++..|.. .+|+.++++|++.++.+.|++.|...++++|.+..+|+.++.+..+. +.-+||.+|+|+.
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 588888888888888875 88888888888888888888888888888888888888888888888 8888888888888
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------------------
Q 000242 1687 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR------------------------- 1741 (1801)
Q Consensus 1687 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k------------------------- 1741 (1801)
..+|++. .+|+...+++++.|..+.|..++-+||+.+|++.-+|..-+.|+-+
T Consensus 747 lkNPk~~--~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia 824 (913)
T KOG0495|consen 747 LKNPKNA--LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIA 824 (913)
T ss_pred hcCCCcc--hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHH
Confidence 8888884 7888888888888888888888888888888888888776665432
Q ss_pred -----cCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1742 -----LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1742 -----~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
...+++||..|+||+. ..|+.- +.|.-+..||.+||+.+....|+.++.
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk--~d~d~G-D~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVK--KDPDNG-DAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--cCCccc-hHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 2346789999999998 677777 799999999999999888888888764
No 25
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.76 E-value=6.2e-17 Score=192.02 Aligned_cols=263 Identities=19% Similarity=0.328 Sum_probs=217.3
Q ss_pred ccCCCCcHHHHHHHHHcC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch------h--------hHHH
Q 000242 1531 EKDAPRTPDEFERLVRSS-PN---SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE------N--------EKLN 1592 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~-P~---s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee------~--------e~l~ 1592 (1801)
.++..+|+..|++++..+ |. -...|.+++..++...+++.|+.+.++|. ..|...+ . ..+.
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 345889999999998754 32 37899999999999999999999999999 4565532 1 1248
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Q 000242 1593 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQR 1669 (1801)
Q Consensus 1593 lW~a~l~le~~~g~~~~e~a~~vferAl~~~~-~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~--~~~~~~w~~~a~~ 1669 (1801)
+|..|+.++..+| +.++.+.+|+|.+..-- ...+-+.|+.+++.+.-++++.+.|++.+..| |...++|..|..-
T Consensus 479 iWs~y~DleEs~g--tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 479 IWSMYADLEESLG--TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 9999999999999 78999999999997654 35889999999999999999999999999877 6789999999977
Q ss_pred HHHh----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH--------------------------------
Q 000242 1670 LLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR-------------------------------- 1713 (1801)
Q Consensus 1670 ~~~~----~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~-------------------------------- 1713 (1801)
+.++ +.++||.+|++||+.+|....-.+|+.||+|+.+.|-..+
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 7666 8999999999999999976555799999999988886443
Q ss_pred ----HHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000242 1714 ----GRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1787 (1801)
Q Consensus 1714 ----Ar~lfe~al~~~P~~--~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~ 1787 (1801)
.|.+|++|++..|+. .+....|++||.+.|.+++||.+|-.+-. -++|+..-.+|..|-+||.+|||.+..+.
T Consensus 637 Gv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq-~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 637 GVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ-ICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred CCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh-cCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 455566668888875 45789999999999999999999999887 46666666899999999999999777665
Q ss_pred HHHHHHHHHHh
Q 000242 1788 VKQKAMEYVES 1798 (1801)
Q Consensus 1788 v~~rAl~~v~~ 1798 (1801)
+. |....|++
T Consensus 716 ML-RikRsvqa 725 (835)
T KOG2047|consen 716 ML-RIKRSVQA 725 (835)
T ss_pred HH-HHHHHHHH
Confidence 54 33444444
No 26
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.72 E-value=1.9e-15 Score=179.57 Aligned_cols=241 Identities=17% Similarity=0.267 Sum_probs=190.2
Q ss_pred HhccCCCCcHHHHHHHHH-cCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH
Q 000242 1529 LLEKDAPRTPDEFERLVR-SSPN-----SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN 1602 (1801)
Q Consensus 1529 ~~~~~~~~a~~~fer~L~-~~P~-----s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~ 1602 (1801)
+..++..+.+.-|..+++ .+|. -..+|..|+.+|...++++.||.+|++|++ +|+..-.+-..+|.+|+.+|+
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~-V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK-VPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc-CCccchHHHHHHHHHHHHHHH
Confidence 334556677778888775 4553 358999999999999999999999999994 676554445589999999999
Q ss_pred HcCCCCHHHHHHHHHHHHhcCC-------------------CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHH
Q 000242 1603 EYGNPPEEAVVKVFQRALQYCD-------------------PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1663 (1801)
Q Consensus 1603 ~~g~~~~e~a~~vferAl~~~~-------------------~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w 1663 (1801)
... ..+.|..+.++|+..-- +..+|..|+++.+..|-++....+|++++..--..+.+-
T Consensus 437 rh~--~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 437 RHE--NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred hhh--hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 998 45999999999985421 128899999999999999999999999998777899999
Q ss_pred HHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH-HHHHcC--CHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Q 000242 1664 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI-LEFKNG--VADRGRSMFEGILSEYPKR--TDLWSIYLD 1737 (1801)
Q Consensus 1664 ~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~-le~~~g--~~e~Ar~lfe~al~~~P~~--~dlw~~y~~ 1737 (1801)
.+||.|+.++ -+++|.+.|+|.+..++.....++|..|.. |-.+.| .+|+||.+||+||..+|.. ..++..|+.
T Consensus 515 ~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999 999999999999998877666789998886 333554 6999999999999988842 238999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000242 1738 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773 (1801)
Q Consensus 1738 le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl 1773 (1801)
+|.+.|-..+|.++|+||.. ..++.++-.+|+.|+
T Consensus 595 lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 99988877777666666655 333333334444444
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.68 E-value=1.5e-15 Score=179.07 Aligned_cols=247 Identities=18% Similarity=0.095 Sum_probs=193.7
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---HHHcCCCCH
Q 000242 1533 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL---ENEYGNPPE 1609 (1801)
Q Consensus 1533 ~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~l---e~~~g~~~~ 1609 (1801)
+.-.++..|++++..+|+-.+++++++..|-..+.+|+|...|+||+..-|. .-.++.|+ +...| .+
T Consensus 233 ei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn--------~A~a~gNla~iYyeqG--~l 302 (966)
T KOG4626|consen 233 EIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN--------HAVAHGNLACIYYEQG--LL 302 (966)
T ss_pred hHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc--------chhhccceEEEEeccc--cH
Confidence 3445667777887888888888888888887778888888888888766553 23444444 23445 56
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Q 000242 1610 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1687 (1801)
Q Consensus 1610 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1687 (1801)
+-|.+.|+||+...|.. ..|..+++.+...|+..+|...|.+++...|...+...+++..+.++ ++++|..+|..|+.
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 88888888888888774 77888888888888888888888888888888888888888888888 88888888888888
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHH
Q 000242 1688 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1767 (1801)
Q Consensus 1688 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~ 1767 (1801)
.+|... ....++|.++.++|++++|...|..+++..|.-.|.++..+..+-..|+.+.|...|+|||. ..|.-+ .
T Consensus 383 v~p~~a--aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~A-e 457 (966)
T KOG4626|consen 383 VFPEFA--AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFA-E 457 (966)
T ss_pred hChhhh--hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHH-H
Confidence 888763 67788888888888888888888888888888888888888888888888888888888887 777666 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1768 LFKKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1768 lw~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
.+.......+..|+..+|.+-|+.|+.
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 777777777888888888888887765
No 28
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=99.68 E-value=5.2e-15 Score=160.91 Aligned_cols=231 Identities=17% Similarity=0.153 Sum_probs=184.7
Q ss_pred cCCCcEEEEEEEEEeeceEEEEEcCC-eEEEecccccCCCCCCCCCCCccCCCEEEEEEEEEeCCCCeEEEEEeeCCCCC
Q 000242 449 ATDRLITHGWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 527 (1801)
Q Consensus 449 ~~~g~~~~g~V~~i~~~G~~V~~~~~-v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~~~~ 527 (1801)
..+|++..+.|.+..++|+|++=.++ -.-++|+++... +...+|+.|++-|. .|. ++|+.++++.
T Consensus 3 ~~iG~~~~l~V~~~~~~g~fL~~~~~~~~ilL~k~~~~~-------~e~evGdev~vFiY-~D~-~~rl~aTt~~----- 68 (287)
T COG2996 3 IKIGQINSLEVVEFSDFGYFLDAGEDGTTILLPKSEPEE-------DELEVGDEVTVFIY-VDS-EDRLIATTRE----- 68 (287)
T ss_pred ccccceEEEEEEEeeceeEEEecCCCceEEeccccCCcC-------CccccCcEEEEEEE-ECC-CCceeheeec-----
Confidence 35799999999999999999985433 267888887643 24789999999766 576 5788888864
Q ss_pred cccccccCCCeEEEEEEEEe-cCcEEEEEEEcCceeEEEecccccCcccccccccccccCCCeEeeEEEeecCCCeEEEe
Q 000242 528 SEDDLVKLGSLVSGVVDVVT-PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 606 (1801)
Q Consensus 528 ~~~~~~~~G~iv~g~V~~v~-~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~i~~vl~~d~~~~~i~ls 606 (1801)
+.+++|+.-+++|+++. ..|+||.. +=.-+-+||.++++..+ .-|+++||++-.-|.+|+.+ |+ .
T Consensus 69 ---p~~tvg~~g~~~Vv~v~~~lGaFlD~--Gl~KDl~vp~~elp~~~------~~wpq~Gd~l~v~l~~Dkk~-Ri--~ 134 (287)
T COG2996 69 ---PKATVGEYGWLKVVEVNKDLGAFLDW--GLPKDLLVPLDELPTLK------SLWPQKGDKLLVYLYVDKKG-RI--W 134 (287)
T ss_pred ---ceEeecceeEEEEEEEcCCcceEEec--CCCcceeeehhhccccc------ccCCCCCCEEEEEEEEccCC-cE--E
Confidence 67889999999999998 77999998 55689999999998633 23799999999888999888 33 3
Q ss_pred ccchhhchhhcCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEee
Q 000242 607 AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 686 (1801)
Q Consensus 607 ~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd 686 (1801)
.+....+..++++..+.+--.|+.++|+|+++...|.||-..++..||+|+||.-. ..+.||.+++||+.+.
T Consensus 135 g~~a~~~~l~~l~~~~~~~l~nq~v~~tVYr~~~~G~fv~~e~~~~GfIh~sEr~~--------~prlG~~l~~rVi~~r 206 (287)
T COG2996 135 GTLAIEKILENLATPAYNNLKNQEVDATVYRLLESGTFVITENGYLGFIHKSERFA--------EPRLGERLTARVIGVR 206 (287)
T ss_pred EEecchhHHHhcCCccchhhhcCeeeeEEEEEeccceEEEEcCCeEEEEcchhhcc--------cccCCceEEEEEEEEc
Confidence 33334444444444332223599999999999999999999999999999998753 3689999999999998
Q ss_pred CCCCeEEEeecccccCC--CChhhHHHHHhHH
Q 000242 687 SETGRITLSLKQSCCSS--TDASFMQEHFLLE 716 (1801)
Q Consensus 687 ~~~~ri~lSlk~~~~~~--~~~~~~~~~~~~~ 716 (1801)
+ +++|.||+++..... .|+..|..||...
T Consensus 207 e-Dg~lnLSl~p~~~E~l~~daq~Il~yL~~~ 237 (287)
T COG2996 207 E-DGKLNLSLRPRAHEMLDEDAQMILTYLESN 237 (287)
T ss_pred c-CCeeecccccccHHhhhhhHHHHHHHHHHc
Confidence 6 999999999986533 7888899998854
No 29
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.68 E-value=1.5e-15 Score=179.03 Aligned_cols=250 Identities=13% Similarity=0.116 Sum_probs=184.0
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000242 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~ 1613 (1801)
..++.+.|.+++..+|.-..+|.+++-.+..+|++-.|...|++|++.-|.. +..++.+.+.+...+ ..+.|.
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-----~dAYiNLGnV~ke~~--~~d~Av 272 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-----LDAYINLGNVYKEAR--IFDRAV 272 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-----hHHHhhHHHHHHHHh--cchHHH
Confidence 3444444444444445444555555555555555555555555555433321 123333333333344 236666
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC
Q 000242 1614 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1691 (1801)
Q Consensus 1614 ~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1691 (1801)
..|+||+...|.. .+|-.++-+|...|..+.|...|++++...|..+.++.+++..+... +..+|.++|.+||..+|.
T Consensus 273 s~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 273 SCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred HHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 6666666665554 55666666777788888888888888888888999999999999888 999999999999999887
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000242 1692 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771 (1801)
Q Consensus 1692 ~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~ 1771 (1801)
+ .+...++|..+.++|.++.|..+|+.++..+|......+.++-++-++|+.+.|...|..|++ +.|.-+ +.+..
T Consensus 353 h--adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA-da~~N 427 (966)
T KOG4626|consen 353 H--ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA-DALSN 427 (966)
T ss_pred c--HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH-HHHHh
Confidence 7 488999999999999999999999999999999999999999999999999999999999998 788666 56666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 000242 1772 YLEYEKSVGEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1772 yl~~E~~~G~~e~a~~v~~rAl~~ 1795 (1801)
...-..+.|+...|.+.|.||++.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhc
Confidence 667788899999999999999874
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.65 E-value=3.2e-14 Score=188.55 Aligned_cols=252 Identities=12% Similarity=0.041 Sum_probs=204.8
Q ss_pred CCCcHHHHHHHHHc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000242 1534 APRTPDEFERLVRS---SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~---~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e 1610 (1801)
..++...|++++.. .|+...+|..++.++...|++++|...|++++...|.. ...|+.+..++...+ +.+
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~-----~~~~~~la~~~~~~g--~~~ 382 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV-----TQSYIKRASMNLELG--DPD 382 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCC--CHH
Confidence 44667788888865 47788889999999999999999999999999766532 257788888778888 568
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHh
Q 000242 1611 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1688 (1801)
Q Consensus 1611 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~ 1688 (1801)
.|...|++|++..|.. .+|..++.+|...|++++|...|++++...|++...|..++..+.+. ++++|...|+++++.
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8999999999888764 88999999999999999999999999999998899999999988888 999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-------HHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 000242 1689 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW-------SIYLDQEIRLGDVDLIRGLFERAISLSLP 1761 (1801)
Q Consensus 1689 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw-------~~y~~le~k~gd~e~ar~lferal~~~~~ 1761 (1801)
+|.. ..+|..++.++...|++++|...|++++...|.....| .....++...|++++|+.+|++++. +.
T Consensus 463 ~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~ 538 (615)
T TIGR00990 463 FPEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--ID 538 (615)
T ss_pred CCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cC
Confidence 8876 47888889999999999999999999998888643322 2222233346889999999999988 56
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000242 1762 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797 (1801)
Q Consensus 1762 pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~ 1797 (1801)
|... ..|..+.....+.|++++|...|++|++...
T Consensus 539 p~~~-~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 PECD-IAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 6666 4677778888888999999999999887654
No 31
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.65 E-value=4.7e-14 Score=186.30 Aligned_cols=251 Identities=10% Similarity=0.014 Sum_probs=197.6
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1611 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~ 1611 (1801)
++.++|...|++++..+|++..+|..++..+.+.|++++|...|++++...|... ..|...+. ....+ +.++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-----~a~~~~~~-l~~~g--~~~e 195 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-----DMIATCLS-FLNKS--RLPE 195 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHH-HHHcC--CHHH
Confidence 4466666677777777777777777777777777777777777776665555322 13322222 34556 4577
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHH----HHHHHHH
Q 000242 1612 VVKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG----VQAVVQR 1684 (1801)
Q Consensus 1612 a~~vferAl~~~~~--~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~----A~~ll~r 1684 (1801)
|...|+++++..+. ...+..++..+.+.|++++|...|++++...|++..+|..++..+.+. ++++ |...|++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 78888887776543 244455567888899999999999999999999999999999999998 8775 8999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 000242 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1764 (1801)
Q Consensus 1685 alk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~ 1764 (1801)
+++..|.+ ..++..+|.++.+.|++++|...|++++...|.+..+|..++..+.+.|+++.|...|++++. ..|..
T Consensus 276 Al~l~P~~--~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~ 351 (656)
T PRK15174 276 ALQFNSDN--VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVT 351 (656)
T ss_pred HHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccc
Confidence 99999986 589999999999999999999999999999999999999999999999999999999999998 66666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000242 1765 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1765 ~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~ 1795 (1801)
. .++..........|+.++|...|++|++.
T Consensus 352 ~-~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 S-KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred h-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5 33443455667889999999999998765
No 32
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.64 E-value=9.2e-14 Score=183.57 Aligned_cols=250 Identities=11% Similarity=0.074 Sum_probs=187.6
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1611 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~ 1611 (1801)
++..+|...|++++..+|+++..|..++..+.+.|++++|.+.|+++++..|.. ...|..+++++...+ +.+.
T Consensus 90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~-----~~a~~~la~~l~~~g--~~~e 162 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN-----SQIFALHLRTLVLMD--KELQ 162 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCC--ChHH
Confidence 445566677777777777777777777777777777777777777777654432 246666666666667 4477
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHh
Q 000242 1612 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1688 (1801)
Q Consensus 1612 a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~-~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~ 1688 (1801)
|...|++++...|.. ..|..+ ..+.+.|++++|...|++++..++ .....+...+..+.+. ++++|...|++++..
T Consensus 163 A~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 163 AISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777777776666543 344333 335666777777777777776654 2333344455666667 888888888888888
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 000242 1689 LPRHKHIKFISQTAILEFKNGVADR----GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1764 (1801)
Q Consensus 1689 ~p~~~~~~~~~~~a~le~~~g~~e~----Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~ 1764 (1801)
.|.. ..++..+|.++...|++++ |...|+++++..|++..+|..++.++.+.|++++|...|++++. +.|..
T Consensus 242 ~p~~--~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~ 317 (656)
T PRK15174 242 GLDG--AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDL 317 (656)
T ss_pred CCCC--HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence 8776 5788899999999999885 89999999999999999999999999999999999999999998 77777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1765 MKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1765 ~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
. ..|..+.....+.|++++|...|+++++
T Consensus 318 ~-~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 318 P-YVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred H-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7 5788888888889999999999988875
No 33
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.64 E-value=8.1e-14 Score=184.72 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Q 000242 1610 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1687 (1801)
Q Consensus 1610 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1687 (1801)
+.|...|++|++..|.. ..|+.++.++...|++++|...|++++...|.+..+|+.++.++... ++++|...|+++++
T Consensus 348 ~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 348 LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555444442 44555555555555555555555555555555555555555555554 55555555555555
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1688 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1688 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
..|.+ ...|..+|.++++.|++++|...|++++..+|.+.++|..++.++...|++++|+..|++|+.
T Consensus 428 l~P~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 428 LDPDF--IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred cCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 55443 244455555555555555555555555555555555555555555555555555555555554
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.63 E-value=1.4e-13 Score=172.89 Aligned_cols=258 Identities=14% Similarity=0.153 Sum_probs=216.9
Q ss_pred HhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000242 1529 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1608 (1801)
Q Consensus 1529 ~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~ 1608 (1801)
...++..+|...|++++..+|++..+|..++.++...|++++|..++++++.. +..........|..++..+...| +
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g--~ 122 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG--L 122 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC--C
Confidence 33466778999999999999999999999999999999999999999999864 32222233467888888888889 5
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHh-CHHHHHHH
Q 000242 1609 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQ-QQEGVQAV 1681 (1801)
Q Consensus 1609 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~-----~~~w~~~a~~~~~~-~~~~A~~l 1681 (1801)
.+.|...|+++++..+.. ..|..++.++.+.|++++|.+.|+++++..+.. ...|..++..+.+. ++++|.+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 699999999999877654 789999999999999999999999999877654 23566778888888 99999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 000242 1682 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1760 (1801)
Q Consensus 1682 l~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~-~dlw~~y~~le~k~gd~e~ar~lferal~~~~ 1760 (1801)
|+++++..|.. ...+..++.++.+.|++++|..+|++++...|.. ..+|..++..+.+.|+.++|...|++++. .
T Consensus 203 ~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~ 278 (389)
T PRK11788 203 LKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--E 278 (389)
T ss_pred HHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 99999988775 4788899999999999999999999999988876 45688888899999999999999999998 5
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000242 1761 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1761 ~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~ 1795 (1801)
.|+.. .+..+..+..+.|+++.|..+++++++.
T Consensus 279 ~p~~~--~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 279 YPGAD--LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred CCCch--HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55554 3466777788899999999999988764
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=4.3e-15 Score=177.23 Aligned_cols=260 Identities=19% Similarity=0.262 Sum_probs=121.2
Q ss_pred HHHHHhccCCCCcHHHHHHHHHc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH
Q 000242 1525 AEERLLEKDAPRTPDEFERLVRS--SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN 1602 (1801)
Q Consensus 1525 ~e~~~~~~~~~~a~~~fer~L~~--~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~ 1602 (1801)
+..-...++.++|.+.+.+.+.. .|++...|..++......++.+.|+..|++++..-+... .....++.+ .
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~-----~~~~~l~~l-~ 88 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP-----QDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccc-c
Confidence 33334456688899999776544 489999999999999999999999999999997644322 345666666 5
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHh-CHHHHH
Q 000242 1603 EYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQ 1679 (1801)
Q Consensus 1603 ~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~--~~~~~~w~~~a~~~~~~-~~~~A~ 1679 (1801)
..+ +.++|.++++++.+..+....|..++.++.+.++++++.++++++.... +.++.+|..++.++.+. +.++|.
T Consensus 89 ~~~--~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDG--DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccc--cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666 4588999999998877777888999999999999999999999977643 68899999999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 000242 1680 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759 (1801)
Q Consensus 1680 ~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~ 1759 (1801)
++|++|++..|.+ ..++..++.++...|+.++++.+++......|.++.+|..|+..+...|++++|..+|++++.
T Consensus 167 ~~~~~al~~~P~~--~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~-- 242 (280)
T PF13429_consen 167 RDYRKALELDPDD--PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK-- 242 (280)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--
Confidence 9999999999997 478999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000242 1760 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797 (1801)
Q Consensus 1760 ~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~ 1797 (1801)
..|+++ .+...|.+.....|..++|..++.+|++.+.
T Consensus 243 ~~p~d~-~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 243 LNPDDP-LWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp HSTT-H-HHHHHHHHHHT--------------------
T ss_pred cccccc-ccccccccccccccccccccccccccccccC
Confidence 777888 6888999999999999999999999998764
No 36
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.59 E-value=9.6e-15 Score=172.39 Aligned_cols=135 Identities=33% Similarity=0.551 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000242 1661 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1738 (1801)
Q Consensus 1661 ~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~-~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~l 1738 (1801)
-+|..|++|..+. ..+.||++|++|++..+.. ..+|..+|.+|+. .++.+.|+.+||++++.+|.+.++|..|+++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCT--YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4799999999999 9999999999999554333 4799999999999 5678889999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000242 1739 EIRLGDVDLIRGLFERAISLSLPPKK-MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798 (1801)
Q Consensus 1739 e~k~gd~e~ar~lferal~~~~~pk~-~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~~ 1798 (1801)
+++.++.+.||.+|||++. .++++. ++.+|.+|++||.++|+.+.+..+++|+.++...
T Consensus 80 l~~~~d~~~aR~lfer~i~-~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS-SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC-TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999 588888 8899999999999999999999999999998643
No 37
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=99.58 E-value=4.1e-16 Score=179.41 Aligned_cols=148 Identities=17% Similarity=0.256 Sum_probs=129.0
Q ss_pred ccCC-CCCEEEEEEEEEeeceEEEEeC--CCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000242 1240 EDLS-PNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316 (1801)
Q Consensus 1240 ~~l~-~G~~v~G~V~~v~~~G~fV~l~--~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~ 1316 (1801)
.+++ +|++|.|+|++|.++|+||.|. ++++|+||+|+|||.++.++++.+++||.|.|+|+++|+++++|.||+|..
T Consensus 12 ~~~P~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~v 91 (319)
T PTZ00248 12 QKFPEEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKRV 91 (319)
T ss_pred hhCCCCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeeec
Confidence 3566 7999999999999999999996 589999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCCCcEEEEEEEEEee-ceEEEE------EeCCceeEEeeccccCcccccCcccccC---CCCEE
Q 000242 1317 DSRTASQSEINNLSNLHVGDIVIGQIKRVES-YGLFIT------IENTNLVGLCHVSELSEDHVDNIETIYR---AGEKV 1386 (1801)
Q Consensus 1317 ~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~-~G~fV~------l~~~~v~gl~~~sel~~~~~~~~~~~~~---~Gd~V 1386 (1801)
..+||... ...++.|+++.|+|+++.+ ||+|++ .-+ .+.++.|.++.+...+.++.+.|. .++.+
T Consensus 92 ~~~pw~~~----~e~~~~g~~v~~~V~~ia~~~g~~~eely~~i~~p-l~~~~gh~y~af~~~v~~~~evl~~l~i~~ev 166 (319)
T PTZ00248 92 SPEDIEAC----EEKFSKSKKVHSIMRHIAQKHGMSVEELYTKIIWP-LYKKYGHALDALKEALTNPDNVFEGLDIPEEV 166 (319)
T ss_pred ccchHHHH----HHhCcCCCEEEEEEEEchhhcCCCHHHHHHHHHHH-HHHhcCCHHHHHHHHhcCchhhhccCCCCHHH
Confidence 98887653 5689999999999999965 999997 444 788999999998888877766666 66655
Q ss_pred EEEEEE
Q 000242 1387 KVKILK 1392 (1801)
Q Consensus 1387 ~~~Vl~ 1392 (1801)
+..++.
T Consensus 167 ~~~l~~ 172 (319)
T PTZ00248 167 KESLLQ 172 (319)
T ss_pred HHHHHH
Confidence 554443
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.56 E-value=5.7e-13 Score=185.75 Aligned_cols=249 Identities=13% Similarity=0.094 Sum_probs=196.7
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1611 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~ 1611 (1801)
++.++|...|++++..+|++...|..++..+...+++++|..+++++....|... ..|..+.......+ +.+.
T Consensus 649 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g--~~~~ 721 (899)
T TIGR02917 649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAA-----LGFELEGDLYLRQK--DYPA 721 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCh-----HHHHHHHHHHHHCC--CHHH
Confidence 3355666666666666666666666666666666666666666666665544322 35666666667777 4588
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCC
Q 000242 1612 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1690 (1801)
Q Consensus 1612 a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1690 (1801)
|.+.|+++++..|....+..++.++.+.|++++|.+.++++++..|.+..++..++..+... ++++|.+.|+++++..|
T Consensus 722 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 722 AIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 88888888888887788888888888888888888888888888888888888888888888 88999999999988887
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 000242 1691 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1770 (1801)
Q Consensus 1691 ~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~ 1770 (1801)
.+ ..++..++.++...|+ ++|..+|++++...|.+..+|..++.++...|++++|..+|++++. ..|.+. .++.
T Consensus 802 ~~--~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~-~~~~ 875 (899)
T TIGR02917 802 DN--AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN--IAPEAA-AIRY 875 (899)
T ss_pred CC--HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCh-HHHH
Confidence 65 5788888888888888 7799999999988888888888888888888999999999999998 555555 5777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1771 KYLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1771 ~yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
.+.....+.|+.++|..++++++
T Consensus 876 ~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 876 HLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 78888888899999888888876
No 39
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3e-15 Score=142.92 Aligned_cols=75 Identities=35% Similarity=0.696 Sum_probs=71.9
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1331 ~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
.+++|+++.|+|++|++||+||+|++ +-+||+||||+++.|++|+.+.+++||.|+|+|+++| ++++|+||+|..
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~-g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~id-e~GKisLSIr~~ 76 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEG-GKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDID-ENGKISLSIRKL 76 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecC-CCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeec-cCCCcceehHHh
Confidence 57899999999999999999999996 8999999999999999999999999999999999999 599999999985
No 40
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.56 E-value=1e-12 Score=185.50 Aligned_cols=198 Identities=13% Similarity=0.077 Sum_probs=138.9
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhH-------HHHHHH--HHHHH
Q 000242 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-------LNIWVA--YFNLE 1601 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~-------l~lW~a--~l~le 1601 (1801)
.++.++|...|++++..+|+++.+|..++..+.+.+++++|+..|+++++..|......+ ...|.. .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999987764322111 012222 12333
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------
Q 000242 1602 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR----------- 1669 (1801)
Q Consensus 1602 ~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~----------- 1669 (1801)
...+ +.+.|...|++|++..|.. ..|..++.+|...|++++|.+.|+++++..|.+..+|..++.+
T Consensus 362 ~~~g--~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 362 LKAN--NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 4556 4577777788887777654 6677777777777777777777777777777666665544332
Q ss_pred -------------------------------HHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000242 1670 -------------------------------LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717 (1801)
Q Consensus 1670 -------------------------------~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~l 1717 (1801)
+... ++++|.+.|+++++..|.+ ..++..+|.++.+.|++++|...
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~--~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS--VWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 2233 6667777777777777665 35666666777777777777777
Q ss_pred HHHHHHhCCCCHHHH
Q 000242 1718 FEGILSEYPKRTDLW 1732 (1801)
Q Consensus 1718 fe~al~~~P~~~dlw 1732 (1801)
|++++...|.+.+.+
T Consensus 518 l~~al~~~P~~~~~~ 532 (1157)
T PRK11447 518 MRRLAQQKPNDPEQV 532 (1157)
T ss_pred HHHHHHcCCCCHHHH
Confidence 777666666555443
No 41
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.56 E-value=1.1e-12 Score=185.26 Aligned_cols=258 Identities=10% Similarity=0.076 Sum_probs=199.6
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhH--------------------
Q 000242 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-------------------- 1590 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~-------------------- 1590 (1801)
.++.++|...|++++..+|++..+|..++..+...+++++|++.|+++++..|.....-.
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999999987664321000
Q ss_pred -----------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHH
Q 000242 1591 -----------------LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKM 1652 (1801)
Q Consensus 1591 -----------------l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~ 1652 (1801)
...|......+...+ +.+.|...|++|++..|.. .+|..++.+|.+.|++++|...|+++
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g--~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQG--KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 001111222333456 5699999999999999874 88999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHH----------------------------------------HHhCCC
Q 000242 1653 IKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA----------------------------------------LLSLPR 1691 (1801)
Q Consensus 1653 ~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ra----------------------------------------lk~~p~ 1691 (1801)
++..|.++..++.++.++.+. +.++|...|+++ ++..|.
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~ 601 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP 601 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 999998888888887776666 666666655542 112333
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000242 1692 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771 (1801)
Q Consensus 1692 ~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~ 1771 (1801)
+ ..++..+|.++.+.|++++|+..|+++++..|.+.+.|..++.++...|++++|+..|++++. ..|... ..+..
T Consensus 602 ~--~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~-~~~~~ 676 (1157)
T PRK11447 602 S--TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSL-NTQRR 676 (1157)
T ss_pred C--chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCCh-HHHHH
Confidence 3 356777888888888888888888888888888888888888888888888888888888776 555555 45666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 000242 1772 YLEYEKSVGEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1772 yl~~E~~~G~~e~a~~v~~rAl~~ 1795 (1801)
+.......|++++|..+++++++.
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhh
Confidence 666666778888888888887764
No 42
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.55 E-value=8.9e-13 Score=183.81 Aligned_cols=251 Identities=15% Similarity=0.068 Sum_probs=165.2
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1611 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~ 1611 (1801)
++..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..+..++...+ +.+.
T Consensus 479 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~ 551 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN-----LRAILALAGLYLRTG--NEEE 551 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHcC--CHHH
Confidence 345566667777777777777777777777777777777777777777655432 245666666666666 4466
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhC
Q 000242 1612 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1689 (1801)
Q Consensus 1612 a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~ 1689 (1801)
|...|+++++..|.. ..|..++.+|...|++++|...|++++..+|.+..+|..++..+... ++++|...|+++++..
T Consensus 552 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777777776666553 66666777777777777777777777766666677777777776666 7777777777777666
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 000242 1690 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1769 (1801)
Q Consensus 1690 p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw 1769 (1801)
|.+ ...|..++.++.+.|++++|...|++++...|.+...|..++.++...|+.+.|..+|+++.. ..|... ..|
T Consensus 632 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~ 706 (899)
T TIGR02917 632 PDS--ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK--QHPKAA-LGF 706 (899)
T ss_pred CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCh-HHH
Confidence 654 356666666666677777777777777777777666666666666666666666666666665 333334 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1770 KKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1770 ~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
..........|++++|...|++|++
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555556666666666666554
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.54 E-value=1.3e-12 Score=176.08 Aligned_cols=248 Identities=13% Similarity=0.010 Sum_probs=202.8
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1611 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~ 1611 (1801)
+...+++..|.+++...|++. .++.++..+.+.|++++|...|++++...|. . ..|..+..+....| +.+.
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~-----~a~~~la~all~~G--d~~e 560 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-N-----EDLLAAANTAQAAG--NGAA 560 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-c-----HHHHHHHHHHHHCC--CHHH
Confidence 345568888999988889754 3555566667899999999999998754332 2 24777777878888 6699
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhC
Q 000242 1612 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1689 (1801)
Q Consensus 1612 a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~ 1689 (1801)
|...|+++++..|.. ..+..++....+.|++++|...|++++...|+ ..+|..++..+.+. ++++|...|++++...
T Consensus 561 A~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 561 RDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999988764 55555555556679999999999999999986 89999999999999 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 000242 1690 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1769 (1801)
Q Consensus 1690 p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw 1769 (1801)
|.+ ..++..+|.++...|++++|+..|+++++..|.+.++|..++..+...|+++.|+..|++++. +.|..+ .+-
T Consensus 640 Pd~--~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a-~i~ 714 (987)
T PRK09782 640 PNN--SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQA-LIT 714 (987)
T ss_pred CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCc-hhh
Confidence 988 489999999999999999999999999999999999999999999999999999999999998 777776 455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1770 KKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1770 ~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
..|..++....+++++..-+.|+..
T Consensus 715 ~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 715 PLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666666666666666666544
No 44
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=99.54 E-value=8.1e-13 Score=144.07 Aligned_cols=216 Identities=19% Similarity=0.159 Sum_probs=169.0
Q ss_pred ccCCCEEEEEEEEEeeCcCeEEEEeCCce-EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeecCCC
Q 000242 1123 IHEGDIVGGRISKILSGVGGLVVQIGPHL-YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1201 (1801)
Q Consensus 1123 l~~G~~v~g~V~~i~~~~~g~~V~l~~~~-~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~id~~~~ 1201 (1801)
+.+|++....|.+.+.+ |+|++-+.+. .-++|.++.. .....+|+.|+++|+- |.
T Consensus 3 ~~iG~~~~l~V~~~~~~--g~fL~~~~~~~~ilL~k~~~~------------------~~e~evGdev~vFiY~-D~--- 58 (287)
T COG2996 3 IKIGQINSLEVVEFSDF--GYFLDAGEDGTTILLPKSEPE------------------EDELEVGDEVTVFIYV-DS--- 58 (287)
T ss_pred ccccceEEEEEEEeece--eEEEecCCCceEEeccccCCc------------------CCccccCcEEEEEEEE-CC---
Confidence 34999999999999999 9999987653 4555555431 1235699999999986 43
Q ss_pred CcceEEEeecccccCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEe-eceEEEEeCCCcEEEEEcccCCCc
Q 000242 1202 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLSDG 1280 (1801)
Q Consensus 1202 ~~~~l~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~-~~G~fV~l~~~v~g~v~~s~lsd~ 1280 (1801)
.+++.++++.+. .++|+.-.+.|+.+. +-|+||+.|-.-+.+|+++++...
T Consensus 59 -~~rl~aTt~~p~---------------------------~tvg~~g~~~Vv~v~~~lGaFlD~Gl~KDl~vp~~elp~~ 110 (287)
T COG2996 59 -EDRLIATTREPK---------------------------ATVGEYGWLKVVEVNKDLGAFLDWGLPKDLLVPLDELPTL 110 (287)
T ss_pred -CCceeheeecce---------------------------EeecceeEEEEEEEcCCcceEEecCCCcceeeehhhcccc
Confidence 357888877664 568999999999998 789999999999999999999854
Q ss_pred ccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeCCcee
Q 000242 1281 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1360 (1801)
Q Consensus 1281 ~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~ 1360 (1801)
.--+| ++|+.+-|+ +.+|. .+||...++.-..-. ........+ -.+|.+.|+|.+....|.||-+++ ++-
T Consensus 111 ~~~wp----q~Gd~l~v~-l~~Dk-k~Ri~g~~a~~~~l~--~l~~~~~~~-l~nq~v~~tVYr~~~~G~fv~~e~-~~~ 180 (287)
T COG2996 111 KSLWP----QKGDKLLVY-LYVDK-KGRIWGTLAIEKILE--NLATPAYNN-LKNQEVDATVYRLLESGTFVITEN-GYL 180 (287)
T ss_pred cccCC----CCCCEEEEE-EEEcc-CCcEEEEecchhHHH--hcCCccchh-hhcCeeeeEEEEEeccceEEEEcC-CeE
Confidence 33334 489999998 57886 559999887644321 000001112 259999999999999999999975 999
Q ss_pred EEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000242 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409 (1801)
Q Consensus 1361 gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~~~ 1409 (1801)
|++|.||.... ...|++++++|+.+. ++++|.||+++.-.
T Consensus 181 GfIh~sEr~~~--------prlG~~l~~rVi~~r-eDg~lnLSl~p~~~ 220 (287)
T COG2996 181 GFIHKSERFAE--------PRLGERLTARVIGVR-EDGKLNLSLRPRAH 220 (287)
T ss_pred EEEcchhhccc--------ccCCceEEEEEEEEc-cCCeeecccccccH
Confidence 99999997654 589999999999999 59999999999644
No 45
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.52 E-value=4.6e-12 Score=170.72 Aligned_cols=245 Identities=12% Similarity=0.000 Sum_probs=213.4
Q ss_pred cHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000242 1537 TPDEFERLVRSSPN--SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614 (1801)
Q Consensus 1537 a~~~fer~L~~~P~--s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~ 1614 (1801)
+...+.+++..+|. ++.+|..++.++.. ++.++|...|.+++...|... .++.+.......+ +.+.|..
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~------~~L~lA~al~~~G--r~eeAi~ 530 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW------QHRAVAYQAYQVE--DYATALA 530 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH------HHHHHHHHHHHCC--CHHHHHH
Confidence 34455666677788 99999999999988 899999999999998887411 1333344445778 5699999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC
Q 000242 1615 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1693 (1801)
Q Consensus 1615 vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~ 1693 (1801)
.|++++...+....|..++.++.+.|++++|...|+++++..|+....+..++..+.+. ++++|...|+++++..|.
T Consensus 531 ~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-- 608 (987)
T PRK09782 531 AWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-- 608 (987)
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--
Confidence 99999887777778999999999999999999999999999888887777777666677 999999999999999994
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000242 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773 (1801)
Q Consensus 1694 ~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl 1773 (1801)
..+|..+|.++.+.|++++|...|++++...|++..+|..++..+...|+.++|+.+|++|+. ..|... .+|....
T Consensus 609 -~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~-~a~~nLA 684 (987)
T PRK09782 609 -ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDP-ALIRQLA 684 (987)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999 788888 6888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q 000242 1774 EYEKSVGEEERIEYVKQKAMEYV 1796 (1801)
Q Consensus 1774 ~~E~~~G~~e~a~~v~~rAl~~v 1796 (1801)
......|++++|...+++|++.-
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC
Confidence 88889999999999999998753
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.48 E-value=8.6e-12 Score=156.59 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=208.6
Q ss_pred ccCCCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC
Q 000242 1531 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1606 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s----~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~ 1606 (1801)
.++.+++...|++++...+.. ...|..++..+...|++++|..+|+++++..|.. ...|..++.++...+
T Consensus 82 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~g- 155 (389)
T PRK11788 82 RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA-----EGALQQLLEIYQQEK- 155 (389)
T ss_pred cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch-----HHHHHHHHHHHHHhc-
Confidence 345778888888887643322 3678999999999999999999999999754432 357888888888889
Q ss_pred CCHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHH
Q 000242 1607 PPEEAVVKVFQRALQYCDPK------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQ 1679 (1801)
Q Consensus 1607 ~~~e~a~~vferAl~~~~~~------~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~ 1679 (1801)
+.+.|.+.|+++++..+.. ..|..++.++.+.+++++|...|+++++..|.....|+.++..+.+. ++++|.
T Consensus 156 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 156 -DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred -hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5699999999999876542 36778889999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 000242 1680 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759 (1801)
Q Consensus 1680 ~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~ 1759 (1801)
++|+++++..|... ..++..++..+...|++++|...|++++...|+. ..+..++.++.+.|++++|..+|++++.
T Consensus 235 ~~~~~~~~~~p~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~-- 310 (389)
T PRK11788 235 EALERVEEQDPEYL-SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLR-- 310 (389)
T ss_pred HHHHHHHHHChhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence 99999999877642 4678888999999999999999999999999976 4558899999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Q 000242 1760 LPPKKMKFLFKKYLEYEKS---VGEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1760 ~~pk~~k~lw~~yl~~E~~---~G~~e~a~~v~~rAl~~ 1795 (1801)
..|+.. .|..++..... +|...++..+++++++.
T Consensus 311 ~~P~~~--~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 311 RHPSLR--GFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hCcCHH--HHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 566655 34444444332 56788888888887753
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.3e-12 Score=158.81 Aligned_cols=254 Identities=17% Similarity=0.101 Sum_probs=222.3
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc-hhh-----------------------
Q 000242 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE-ENE----------------------- 1589 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~e-e~e----------------------- 1589 (1801)
-.+|...|+++-...+|......+++..|..+.++++|+++|+++-+.-|++- .+|
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55778889995566788887778999999999999999999999988777652 111
Q ss_pred -----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHH
Q 000242 1590 -----KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1663 (1801)
Q Consensus 1590 -----~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w 1663 (1801)
+-+-|.++.|++..++ +-++|.+.|+||++..|.. =.|..++.=+.....++.|...|..|+...|....+|
T Consensus 415 ~~~~~sPesWca~GNcfSLQk--dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQK--DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhh--HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 1167999999998888 5699999999999999965 5677777777888999999999999999999999999
Q ss_pred HHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000242 1664 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1742 (1801)
Q Consensus 1664 ~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~ 1742 (1801)
+-++..++++ +++.|.-.|++|++.+|.+. .+...++.++.+.|+.|+|..+|++|+..+|+++.--+.-+.+++..
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns--vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNS--VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccch--hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 9999999999 99999999999999999984 67888889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1743 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1743 gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
+++++|...||..-. +.|+.. ..+-.......+.|+.+.|..-|--|.+
T Consensus 571 ~~~~eal~~LEeLk~--~vP~es-~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 571 GRYVEALQELEELKE--LVPQES-SVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred cchHHHHHHHHHHHH--hCcchH-HHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 999999999999888 888888 6777777888889998888877766654
No 48
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.47 E-value=8.8e-12 Score=146.87 Aligned_cols=236 Identities=19% Similarity=0.278 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHhcC------CH--HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC------------CCHHH
Q 000242 1552 SFVWIKYMAFMLSMA------DV--EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN------------PPEEA 1611 (1801)
Q Consensus 1552 ~~~W~~y~~~~~~~~------e~--d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~------------~~~e~ 1611 (1801)
..+|.+++.++..+. .+ .+.--+|++++..+++.+ .+|..|..+....+. .-.++
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~p-----eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e 311 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHP-----EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDE 311 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHHhhHHHHHhcccccchhhHHH
Confidence 468999999987554 22 233456789998888876 499998887666551 01588
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHHhCC---hHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-CHHHHHHHHHH
Q 000242 1612 VVKVFQRALQYCDP--KKVHLALLGLYERTEQ---NKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1684 (1801)
Q Consensus 1612 a~~vferAl~~~~~--~~v~~~l~~i~~~~g~---~~~A~~~~~~~~k~~-~~~~~~w~~~a~~~~~~-~~~~A~~ll~r 1684 (1801)
+..+|+|++..... .-+|.++++..+..-+ ++..-++|+++++++ .+..-+|..|.++..+. ..+.||.+|.+
T Consensus 312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~k 391 (656)
T KOG1914|consen 312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKK 391 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999976654 3788899888776544 888999999999987 46667899999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 000242 1685 ALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1763 (1801)
Q Consensus 1685 alk~~p~~~~~~~~~~~a~le~~-~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk 1763 (1801)
|-+.--... .++...|.+|+. .++.+-|-.+|+-.|+.+++.+..-..|++++...++-..||.+|||++...++++
T Consensus 392 aR~~~r~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 392 AREDKRTRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HhhccCCcc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 987654443 578888888774 57999999999999999999999999999999999999999999999999668999
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1764 KMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1764 ~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
+.+.+|.+|++||...||...+.++-+|-..
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999999998887666543
No 49
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3.6e-14 Score=135.63 Aligned_cols=77 Identities=30% Similarity=0.486 Sum_probs=73.4
Q ss_pred cCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000242 624 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701 (1801)
Q Consensus 624 ~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~ 701 (1801)
.+++|++++|.|+.|++||+||+|++|=+||+|+|++.+.|+.++.+++++||.|.|+|+++|. ++++.||+|....
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide-~GKisLSIr~~~e 78 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE-NGKISLSIRKLEE 78 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeecc-CCCcceehHHhhh
Confidence 3679999999999999999999999999999999999999999999999999999999999997 9999999997754
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=7.6e-12 Score=145.76 Aligned_cols=240 Identities=16% Similarity=0.166 Sum_probs=197.5
Q ss_pred HhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000242 1529 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1608 (1801)
Q Consensus 1529 ~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~ 1608 (1801)
++.++.-.|..+|+.++..+|....++|..+..|++..+.++-...|..|.+.-|... .++.....+....+ +
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~-----dvYyHRgQm~flL~--q 409 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP-----DVYYHRGQMRFLLQ--Q 409 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC-----chhHhHHHHHHHHH--H
Confidence 4577888999999999999999888899999999999999999999999998766444 35555555555555 4
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Q 000242 1609 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1686 (1801)
Q Consensus 1609 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ral 1686 (1801)
.+.|..-|++|+...|.. -.|++++-...+.++++++...|+.+.++||..++++..+++.+..+ +++.|.+.|..|+
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 599999999999999987 66888888888888999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCC----hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 000242 1687 LSLPRHK----HIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1761 (1801)
Q Consensus 1687 k~~p~~~----~~~~~~~~a~le~-~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~ 1761 (1801)
..-|..+ .+..+..-|.+.+ =.+++.+|..++++|+..+|++...+..+++++.+.|++++|.++||.++. +.
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~--lA 567 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ--LA 567 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HH
Confidence 9988721 1223333333333 237999999999999999999999999999999999999999999999997 55
Q ss_pred chhHHHHHHHHHHHHHH
Q 000242 1762 PKKMKFLFKKYLEYEKS 1778 (1801)
Q Consensus 1762 pk~~k~lw~~yl~~E~~ 1778 (1801)
...+ ..-..|--.|..
T Consensus 568 rt~~-E~~~a~s~aeAA 583 (606)
T KOG0547|consen 568 RTES-EMVHAYSLAEAA 583 (606)
T ss_pred HhHH-HHHHHHHHHHHH
Confidence 3333 455555444443
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=5.2e-13 Score=159.33 Aligned_cols=216 Identities=16% Similarity=0.148 Sum_probs=120.4
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000242 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e 1610 (1801)
-++.+++...|++++..+|.++..+..++.+ ...+++++|..+++++.+..+. ...|..++.+....+ +.+
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~------~~~l~~~l~~~~~~~--~~~ 127 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD------PRYLLSALQLYYRLG--DYD 127 (280)
T ss_dssp --------------------------------------------------------------------H-HHHTT---HH
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccc------cchhhHHHHHHHHHh--HHH
Confidence 3457889999999999999999999999999 7999999999999998875542 246888888888888 669
Q ss_pred HHHHHHHHHHhcCC---CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Q 000242 1611 AVVKVFQRALQYCD---PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1686 (1801)
Q Consensus 1611 ~a~~vferAl~~~~---~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ral 1686 (1801)
.+..+++++.+... +..+|..++.++.+.|+.++|...|+++++..|++..++..++.++... +.+++++++.+..
T Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 128 EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999886552 3489999999999999999999999999999999999999999999999 9999999999998
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1687 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1687 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
+..|.+. .+|..+|..++..|++++|..+|+++++.+|+++.++..|++.+.+.|+.++|..++.+++.
T Consensus 208 ~~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 208 KAAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HH-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHCcCHH--HHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8887764 68999999999999999999999999999999999999999999999999999999999886
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.2e-11 Score=143.58 Aligned_cols=248 Identities=13% Similarity=0.112 Sum_probs=202.8
Q ss_pred CCcHHHHHHHHHc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000242 1535 PRTPDEFERLVRS-SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613 (1801)
Q Consensus 1535 ~~a~~~fer~L~~-~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~ 1613 (1801)
.+++..+++++.. .|++..+-...+.....+.++|+|..+|+...+..|++-+ .+.++...+..- . +..+.-
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~--dmdlySN~LYv~---~--~~skLs 316 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD--DMDLYSNVLYVK---N--DKSKLS 316 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch--hHHHHhHHHHHH---h--hhHHHH
Confidence 3566778888865 8999999999999999999999999999999999888542 223333322221 1 123444
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC
Q 000242 1614 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1691 (1801)
Q Consensus 1614 ~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1691 (1801)
-+.+.+++.+..+ +...-.++.|...++.++|...|+++++.+|....+|..++.=+++. +-..|.+.|.||++.+|.
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 4555555555443 55566778888889999999999999999999999999999999999 999999999999999998
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000242 1692 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771 (1801)
Q Consensus 1692 ~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~ 1771 (1801)
+. .+|+.++|.+.-++.+.-|.-.|++|++.-|.+..+|..+++.|.+.+..+.|..+|.||+. +..-+. ....+
T Consensus 397 Dy--RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~-~~l~~ 471 (559)
T KOG1155|consen 397 DY--RAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEG-SALVR 471 (559)
T ss_pred hH--HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccch-HHHHH
Confidence 74 89999999999999999999999999999999999999999999999999999999999998 443333 34556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1772 YLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1772 yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
...+.++.++.++|...|++.++
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 67777888999999999988887
No 53
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=2e-11 Score=131.14 Aligned_cols=192 Identities=17% Similarity=0.117 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000242 1592 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1670 (1801)
Q Consensus 1592 ~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~ 1670 (1801)
++.+.+.--+.+.| +...|+.-+++|++..|+. ..|..++.+|.+.|..+.|.+.|+++++..|++.++..+|+.|+
T Consensus 36 ~arlqLal~YL~~g--d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQG--DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 45555555566778 6799999999999999986 99999999999999999999999999999999999999999999
Q ss_pred HHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 000242 1671 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1749 (1801)
Q Consensus 1671 ~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar 1749 (1801)
-.+ ++++|.+.|++|+..---..+...|.+.+..-++.|++++|+.+|+++|..+|++.......++++++.|++-.||
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999 9999999999999864333445899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000242 1750 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYV 1788 (1801)
Q Consensus 1750 ~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v 1788 (1801)
..|++... -.+-++..+|.- +.++...||...+.+.
T Consensus 194 ~~~~~~~~--~~~~~A~sL~L~-iriak~~gd~~~a~~Y 229 (250)
T COG3063 194 LYLERYQQ--RGGAQAESLLLG-IRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHh--cccccHHHHHHH-HHHHHHhccHHHHHHH
Confidence 99999888 333556578865 6889999998876544
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=1.9e-11 Score=159.27 Aligned_cols=244 Identities=10% Similarity=-0.062 Sum_probs=196.6
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHc
Q 000242 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSM---------ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1604 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~---------~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~ 1604 (1801)
..+|...|++++..+|+++..|..++.++... +++++|...+++|++.-|... ..|..+..++...
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~-----~a~~~lg~~~~~~ 351 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP-----QALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHc
Confidence 45788899999999999999999888776533 348999999999998766533 4788888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHH
Q 000242 1605 GNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVV 1682 (1801)
Q Consensus 1605 g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll 1682 (1801)
+ +.+.|...|++|++.+|.. ..|..++.++...|++++|...|++++...|.....+..++..++.. ++++|...+
T Consensus 352 g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 S--EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred c--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 8 5699999999999999985 88999999999999999999999999999998887766666666667 999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC
Q 000242 1683 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS-LP 1761 (1801)
Q Consensus 1683 ~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~-~~ 1761 (1801)
++++...|... +..+..+|.++...|++++|+..|++++...|.....|...+..+...|+ +|+..+++++... ..
T Consensus 430 ~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDN-PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh
Confidence 99998864332 46788899999999999999999999999999888888888888888774 7888777766511 11
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000242 1762 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1792 (1801)
Q Consensus 1762 pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rA 1792 (1801)
+.+. .| +..++.-+|+.+.+... +++
T Consensus 507 ~~~~--~~--~~~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 507 DNNP--GL--LPLVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred hcCc--hH--HHHHHHHHhhhHHHHHH-HHh
Confidence 1111 22 44566677887776665 444
No 55
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.41 E-value=6.3e-13 Score=122.49 Aligned_cols=71 Identities=35% Similarity=0.632 Sum_probs=66.8
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCc---cccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000242 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVT 1312 (1801)
Q Consensus 1242 l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~---~~~f~~G~~V~~~Vl~vd~~~~ri~lS 1312 (1801)
+++|++|.|+|++++++|+||+++++++|+||++++||.++.+| .+.|++||.|+|+|+++|++++++.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 57999999999999999999999999999999999999997775 589999999999999999999999886
No 56
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.41 E-value=6.5e-13 Score=122.39 Aligned_cols=71 Identities=21% Similarity=0.445 Sum_probs=66.3
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccC---cccccCCCCEEEEEEEEEecCCCeeEEe
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN---IETIYRAGEKVKVKILKVDKEKRRISLG 1403 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~---~~~~~~~Gd~V~~~Vl~id~e~~ri~ls 1403 (1801)
+++|++|.|+|+++++||+||.|++ ++.|++|+++++|.++.+ +.+.|++||.|+++|+++|++++||.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~-~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSS-SIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCC-CCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 5799999999999999999999987 899999999999998766 4589999999999999999999999886
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.40 E-value=1.2e-10 Score=145.64 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=123.3
Q ss_pred HHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC
Q 000242 1527 ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1606 (1801)
Q Consensus 1527 ~~~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~ 1606 (1801)
.....++..+|...+...+..+|.++.+|..++..|.+.|++++|...+--|-...|..- .+|..+..+-.++++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-----e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-----ELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHhccc
Confidence 334457789999999999999999999999999999999999999988877776555422 589999999999995
Q ss_pred CCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHh-CHHHHH
Q 000242 1607 PPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK-----VWLRRVQRLLKQ-QQEGVQ 1679 (1801)
Q Consensus 1607 ~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~-----~w~~~a~~~~~~-~~~~A~ 1679 (1801)
.+.|+-.|.||++.+|.+ ++....+.+|.+.|++..|.+.|.+++...|+..= .-..+++++... +.+.|.
T Consensus 223 --i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 223 --INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred --HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 599999999999999987 89999999999999999999999999988762211 112334444444 446666
Q ss_pred HHHHHHHH
Q 000242 1680 AVVQRALL 1687 (1801)
Q Consensus 1680 ~ll~ralk 1687 (1801)
+.++.++.
T Consensus 301 ~~le~~~s 308 (895)
T KOG2076|consen 301 KALEGALS 308 (895)
T ss_pred HHHHHHHh
Confidence 55555544
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=2.9e-10 Score=142.95 Aligned_cols=265 Identities=12% Similarity=0.086 Sum_probs=198.8
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Q 000242 1522 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1601 (1801)
Q Consensus 1522 ~~~~e~~~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le 1601 (1801)
+......+..++.+.|...+.++....|+....++-.+....+.|+.+.|...+.++.+..|... +.+...+..+.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~----l~~~~~~a~l~ 163 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN----ILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHH
Confidence 33444445566677777777777777777777777777777777888888888888776655422 23455566666
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHH--------------------------
Q 000242 1602 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIK-------------------------- 1654 (1801)
Q Consensus 1602 ~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k-------------------------- 1654 (1801)
...+ +.+.|...++++++..|.. .++..++.+|.+.|++++|.+.+.++.+
T Consensus 164 l~~~--~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 164 LAQN--ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6777 4577888888888777754 6677777777777776666555555442
Q ss_pred ------------hcC----CCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHH--HHHHHHHHHHHcCCHHHHH
Q 000242 1655 ------------KFK----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK--FISQTAILEFKNGVADRGR 1715 (1801)
Q Consensus 1655 ------------~~~----~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~--~~~~~a~le~~~g~~e~Ar 1715 (1801)
..| +++.+|..++..+... ++++|.+.++++++..|.+.... .+..+.. ...++.+.++
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~--l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR--LKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh--cCCCChHHHH
Confidence 222 4778888999988888 99999999999999999875322 2333332 3457899999
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHH--HHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000242 1716 SMFEGILSEYPKRT--DLWSIYLDQEIRLGDVDLIRGLFER--AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1791 (1801)
Q Consensus 1716 ~lfe~al~~~P~~~--dlw~~y~~le~k~gd~e~ar~lfer--al~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~r 1791 (1801)
..++++++..|.++ .+...|+.++++.|++++|+..|++ ++. ..|+.. . +..+.....+.|+.++|.+++++
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~--~~p~~~-~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK--EQLDAN-D-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh--cCCCHH-H-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999 8999999999999999999999995 555 666665 3 45888999999999999999999
Q ss_pred HHHHHHh
Q 000242 1792 AMEYVES 1798 (1801)
Q Consensus 1792 Al~~v~~ 1798 (1801)
|+..+.+
T Consensus 396 ~l~~~~~ 402 (409)
T TIGR00540 396 SLGLMLA 402 (409)
T ss_pred HHHHHhc
Confidence 9987754
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=4.6e-11 Score=139.36 Aligned_cols=234 Identities=13% Similarity=0.073 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHH
Q 000242 1553 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLA 1631 (1801)
Q Consensus 1553 ~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~ 1631 (1801)
.....-+-|++-.|+.-.|...|+.+++..|... ++++.+..++.+.. +.++....|..|...+|.+ .+|.+
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-----~lyI~~a~~y~d~~--~~~~~~~~F~~A~~ldp~n~dvYyH 399 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-----SLYIKRAAAYADEN--QSEKMWKDFNKAEDLDPENPDVYYH 399 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-----hHHHHHHHHHhhhh--ccHHHHHHHHHHHhcCCCCCchhHh
Confidence 3444455677788999999999999998766433 34666666666666 4488999999999999986 99999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000242 1632 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710 (1801)
Q Consensus 1632 l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~ 1710 (1801)
.++++.-.+++++|..-|+++++..|.+.-.+..++-.+.++ +++++...|+.+.+.+|.. ++++..||+.+..+++
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQ 477 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHh
Confidence 999999999999999999999999999999999999999999 9999999999999999999 4999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000242 1711 ADRGRSMFEGILSEYPK------RTDLWSIYLDQEIR-LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1783 (1801)
Q Consensus 1711 ~e~Ar~lfe~al~~~P~------~~dlw~~y~~le~k-~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e 1783 (1801)
++.|...|..++...|. +...+..-+.+..+ .+++.+|..++++|+. +.|+.- ..+.-+..||-++|+.+
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--~Dpkce-~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--LDPKCE-QAYETLAQFELQRGKID 554 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--cCchHH-HHHHHHHHHHHHHhhHH
Confidence 99999999999999998 44433333333222 3899999999999999 777655 67888889999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 000242 1784 RIEYVKQKAMEYVES 1798 (1801)
Q Consensus 1784 ~a~~v~~rAl~~v~~ 1798 (1801)
+|..+|++++.+...
T Consensus 555 eAielFEksa~lArt 569 (606)
T KOG0547|consen 555 EAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998875
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=9.2e-11 Score=134.92 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000242 1591 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1669 (1801)
Q Consensus 1591 l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~ 1669 (1801)
...|..+...+...+ +.+.|...|+++++..|.. ..|..++.+|...|++++|.+.|++++...|....+|..++.+
T Consensus 31 ~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQG--DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 357777778888888 5699999999999988764 8899999999999999999999999999999999999999999
Q ss_pred HHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 000242 1670 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1748 (1801)
Q Consensus 1670 ~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~a 1748 (1801)
+... ++++|.+.|++++...+.......|..++..+...|++++|...|++++...|.+...|..++.++...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999 999999999999986543334578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1749 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1749 r~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
..+|++++. ..|... ..|.....+....|+.+.+..+.+.+..
T Consensus 189 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQ--TYNQTA-ESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHH--hCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999998 455555 3444667778888999999888777654
No 61
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=99.38 E-value=9.2e-13 Score=151.98 Aligned_cols=109 Identities=22% Similarity=0.266 Sum_probs=97.1
Q ss_pred cCC-CCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000242 624 HIH-PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700 (1801)
Q Consensus 624 ~~~-~G~~~~G~V~~i~~~G~fV~f~--~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~ 700 (1801)
.++ +|+++.|+|++|+++|+||.+. +|+.||+|.|++||.++.+|++.+++||.|.|+|++||+++++|.||+|...
T Consensus 13 ~~P~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~v~ 92 (319)
T PTZ00248 13 KFPEEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKRVS 92 (319)
T ss_pred hCCCCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeeecc
Confidence 355 7999999999999999999996 7999999999999999999999999999999999999999999999999876
Q ss_pred cCCCChhhHHHHHhHHHHHHHhhcccCCCcccccccccccccEEEEEEEEeec-ceeEEE
Q 000242 701 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVVS 759 (1801)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~-~g~~v~ 759 (1801)
. +|| ......|+.|++|+++|..+.+ +|+.++
T Consensus 93 ~------------------------~pw---~~~~e~~~~g~~v~~~V~~ia~~~g~~~e 125 (319)
T PTZ00248 93 P------------------------EDI---EACEEKFSKSKKVHSIMRHIAQKHGMSVE 125 (319)
T ss_pred c------------------------chH---HHHHHhCcCCCEEEEEEEEchhhcCCCHH
Confidence 5 232 3445789999999999999965 898764
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=1e-10 Score=152.36 Aligned_cols=236 Identities=12% Similarity=-0.034 Sum_probs=179.8
Q ss_pred cCCCCHHHHHHHHHHH--H---hcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH---HcCC----CCHHHHHH
Q 000242 1547 SSPNSSFVWIKYMAFM--L---SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN---EYGN----PPEEAVVK 1614 (1801)
Q Consensus 1547 ~~P~s~~~W~~y~~~~--~---~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~---~~g~----~~~e~a~~ 1614 (1801)
..|.+.+.|..|..-. + ..+.+++|.+.|++|++..|... ..|..+..++. ..+. ...+.|..
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a-----~a~~~La~~~~~~~~~g~~~~~~~~~~A~~ 325 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI-----APYCALAECYLSMAQMGIFDKQNAMIKAKE 325 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH-----HHHHHHHHHHHHHHHcCCcccchHHHHHHH
Confidence 3455666665555542 2 12357899999999998777432 34444333322 1110 03589999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCC
Q 000242 1615 VFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1692 (1801)
Q Consensus 1615 vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~ 1692 (1801)
.+++|++..|.. ..|..++.++...|++++|...|+++++..|++..+|+.++..+... ++++|...|++|++..|.+
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999975 89999999999999999999999999999999999999999999999 9999999999999999987
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000242 1693 KHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771 (1801)
Q Consensus 1693 ~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~-P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~ 1771 (1801)
. ..+..++..++..|++++|...|++++... |..+..|..++.++...|++++|+..|+++.. .+|... ..+..
T Consensus 406 ~--~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~-~~~~~ 480 (553)
T PRK12370 406 A--AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGL-IAVNL 480 (553)
T ss_pred h--hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhH-HHHHH
Confidence 4 344445556777899999999999999875 77888999999999999999999999999877 555444 23433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1772 YLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1772 yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
........| +.+...+++.++
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHH
Confidence 333334444 356665655544
No 63
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.37 E-value=1.7e-10 Score=155.91 Aligned_cols=260 Identities=10% Similarity=0.019 Sum_probs=200.8
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------------------------
Q 000242 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL------------------------------- 1579 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral------------------------------- 1579 (1801)
.++..+|...|++++..+|++..+|..|+..+...+..++|...+++++
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence 3557788899999999999999999999888877777666555554322
Q ss_pred ---------------HhcCCcchhh--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhC
Q 000242 1580 ---------------QTINIREENE--KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD--PKKVHLALLGLYERTE 1640 (1801)
Q Consensus 1580 ---------------~~i~~~ee~e--~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~--~~~v~~~l~~i~~~~g 1640 (1801)
+..+...+.. ....++..+......+ ..+.|+..|+++++..+ +......++.+|...+
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g--~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD--RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 2211110000 0111222122234446 45899999999998864 2333333688999999
Q ss_pred ChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC-------------CChHHHHHHHH
Q 000242 1641 QNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-------------HKHIKFISQTA 1702 (1801)
Q Consensus 1641 ~~~~A~~~~~~~~k~~~~~----~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~-------------~~~~~~~~~~a 1702 (1801)
++++|...|++++...|.. ...+..++..+.+. ++++|.+.|+++....|. .....++..+|
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 9999999999999876544 45667777777888 999999999999998763 12346788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH
Q 000242 1703 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1782 (1801)
Q Consensus 1703 ~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~ 1782 (1801)
.++...|++++|..+|++++...|.+..+|..++.++...|++++|..+|++++. +.|++. .++..........|++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~-~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNI-NLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCh-HHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999999999999999999 778888 4777777778889999
Q ss_pred HHHHHHHHHHHHH
Q 000242 1783 ERIEYVKQKAMEY 1795 (1801)
Q Consensus 1783 e~a~~v~~rAl~~ 1795 (1801)
+.|+.+++++++.
T Consensus 444 ~~A~~~~~~ll~~ 456 (765)
T PRK10049 444 RQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.4e-10 Score=133.51 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=176.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HH
Q 000242 1550 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KV 1628 (1801)
Q Consensus 1550 ~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v 1628 (1801)
.....|+.++..+...+++++|...++++++..|.. ...|..+..++...+ +.+.|.+.|+++++..|.. ..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~ 101 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-----YLAYLALALYYQQLG--ELEKAEDSFRRALTLNPNNGDV 101 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHH
Confidence 347888999999999999999999999999876642 357777888888888 5699999999999988764 88
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000242 1629 HLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1705 (1801)
Q Consensus 1629 ~~~l~~i~~~~g~~~~A~~~~~~~~k~~--~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le 1705 (1801)
|..++.++...|++++|...|++++... +.....|..++..+... ++++|.+.|.++++..|.+ ...|..++.++
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~ 179 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--PESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHH
Confidence 9999999999999999999999999753 45678899999999999 9999999999999999876 47899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1706 ~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
+..|++++|..+|++++...|.+...|...+.++...|+.+.|+.+++.+..
T Consensus 180 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999999998888888899999999999999999888765
No 65
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.35 E-value=3.4e-12 Score=117.44 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=66.0
Q ss_pred cCCCCCEEEEEEEEEecCeEEEEEC-CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000242 624 HIHPNSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700 (1801)
Q Consensus 624 ~~~~G~~~~G~V~~i~~~G~fV~f~-~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~ 700 (1801)
+++.|+.++|+|++|+++|+||+|. +|++||+|++++++. +.|++||++.|+|+++|++++++.||+|+..
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~------~~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~~ 72 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNF------SKLKVGQLLLCVVEKVKDDGRVVSLSADPSK 72 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCcc------cccCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 4789999999999999999999996 699999999999875 6799999999999999999999999999764
No 66
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.35 E-value=2e-12 Score=118.98 Aligned_cols=71 Identities=46% Similarity=0.774 Sum_probs=65.3
Q ss_pred cccCCcEEEEEEeeeeceeEEEEecCCcceeeccCCCcCcCCCCccCCCcEEEEEEEEEcCCCcEEEEccCcc
Q 000242 95 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 167 (1801)
Q Consensus 95 ~l~~g~~l~~~V~svedhG~ild~g~~~~~gfl~~~~~~~~~~~~~~~G~~~~~~v~~~~~~~~~v~ls~~~~ 167 (1801)
+|.+|+++.|+|+|||||||+|+||+.+++||||+++++.. ..+++||.+.|.|++++.+++.+.||+.+.
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~--~~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~ 71 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNF--SKLKVGQLLLCVVEKVKDDGRVVSLSADPS 71 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCcc--cccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 68899999999999999999999999999999999998643 379999999999999999999999998654
No 67
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.35 E-value=3.2e-10 Score=154.15 Aligned_cols=251 Identities=11% Similarity=0.016 Sum_probs=137.1
Q ss_pred CCCcHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000242 1534 APRTPDEFERLVRSSP-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1612 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P-~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a 1612 (1801)
..++...|+++..... -+...|..++..|.+.|++++|..+|+++.+.- ...+ ...|..+++.+.+.+ ..+.|
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v~PD---~vTYnsLI~a~~k~G--~~deA 561 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-VKPD---RVVFNALISACGQSG--AVDRA 561 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHHHHCC--CHHHH
Confidence 4445555555554322 245666666666666666666666666665321 1111 235666666666666 44666
Q ss_pred HHHHHHHHh----cCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Q 000242 1613 VKVFQRALQ----YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1686 (1801)
Q Consensus 1613 ~~vferAl~----~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~-~~~~~~w~~~a~~~~~~-~~~~A~~ll~ral 1686 (1801)
.++|+++.. ..|....|..++..|.+.|++++|.++|++|.+.. +.+...|..++..+.+. ++++|.++|.++.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666653 22344556666666666666666666666666543 34555666666666666 6666666666665
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000242 1687 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1687 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~-P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~ 1765 (1801)
+..-.. ....|..++..+.+.|++++|..+|+.+.+.. +.+...|..++..+.+.|+++.|..+|+.+....+.|+.
T Consensus 642 ~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv- 719 (1060)
T PLN03218 642 KKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV- 719 (1060)
T ss_pred HcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-
Confidence 542111 12455555555555666666666666655442 234455555666666666666666666655543344432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1766 KFLFKKYLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1766 k~lw~~yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
..|+..+....+.|+.++|..+|+++.
T Consensus 720 -vtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 720 -STMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 245555555555566666555555543
No 68
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.35 E-value=1.5e-10 Score=156.61 Aligned_cols=254 Identities=10% Similarity=0.002 Sum_probs=186.3
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC--
Q 000242 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP-- 1608 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~-- 1608 (1801)
.++.++|...+++++..+|++.. |..++..+...++.++|...|+++++..|... .+|..+..+....+.+.
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~-----~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ-----QYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHHH
Confidence 34577888888888888888888 88888888888888888888888887777533 35555555544333210
Q ss_pred ------------------------------------------HHHHHHHHHHHHhcC---CCH-----HHHHHHHHHHHH
Q 000242 1609 ------------------------------------------EEAVVKVFQRALQYC---DPK-----KVHLALLGLYER 1638 (1801)
Q Consensus 1609 ------------------------------------------~e~a~~vferAl~~~---~~~-----~v~~~l~~i~~~ 1638 (1801)
.+.|.+.|+++++.. |.. ..++..+..+..
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 033444555555432 211 122222233456
Q ss_pred hCChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHH
Q 000242 1639 TEQNKLADELLYKMIKKF---KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVAD 1712 (1801)
Q Consensus 1639 ~g~~~~A~~~~~~~~k~~---~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~--~~~~~~~~a~le~~~g~~e 1712 (1801)
.+++++|...|+++++.. |.....| ++..++.. ++++|..+|+++++..|... ....+..++..+.+.|+++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 688899999999988875 3344455 47778888 99999999999988776541 2356677777778899999
Q ss_pred HHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000242 1713 RGRSMFEGILSEYPK---------------RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1777 (1801)
Q Consensus 1713 ~Ar~lfe~al~~~P~---------------~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~ 1777 (1801)
+|..+|++++...|. ...++..++.++...|+.++|+.+|++++. ..|.+. .+|........
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~-~l~~~lA~l~~ 404 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQ-GLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHH
Confidence 999999999988773 234667788888999999999999999998 677887 69999999999
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 000242 1778 SVGEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1778 ~~G~~e~a~~v~~rAl~~ 1795 (1801)
..|+.++|..++++|++.
T Consensus 405 ~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 405 ARGWPRAAENELKKAEVL 422 (765)
T ss_pred hcCCHHHHHHHHHHHHhh
Confidence 999999999999999874
No 69
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.34 E-value=3.4e-12 Score=117.53 Aligned_cols=70 Identities=27% Similarity=0.464 Sum_probs=66.6
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCccc--ccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000242 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~--~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK 1405 (1801)
|++|.|+|+++.++|+||+|++ +++|++|++++++.. .+++.+.|++||.|+|+|+++|++++||.||+|
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~-~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISP-DVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCC-CcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7899999999999999999987 899999999999864 788999999999999999999999999999987
No 70
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.34 E-value=8.1e-10 Score=138.12 Aligned_cols=231 Identities=14% Similarity=0.122 Sum_probs=174.4
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHH
Q 000242 1552 SFVWIKYMAFM-LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVH 1629 (1801)
Q Consensus 1552 ~~~W~~y~~~~-~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~ 1629 (1801)
+.+.+-.++.. .+.|+++.|...+++|.+..|... +........+....+ +.+.|.+.++++.+..|.. .++
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~----~~~~l~~a~l~l~~g--~~~~Al~~l~~~~~~~P~~~~al 190 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ----LPVEITRVRIQLARN--ENHAARHGVDKLLEVAPRHPEVL 190 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHH
Confidence 34444443333 677777777777777776544321 122223345556666 4577777777777777764 667
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHH------------------------------------------hcCCCHHHHHHHH
Q 000242 1630 LALLGLYERTEQNKLADELLYKMIK------------------------------------------KFKHSCKVWLRRV 1667 (1801)
Q Consensus 1630 ~~l~~i~~~~g~~~~A~~~~~~~~k------------------------------------------~~~~~~~~w~~~a 1667 (1801)
..++.+|.+.|++++|.+++.++.+ ..++++.++..|+
T Consensus 191 ~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A 270 (398)
T PRK10747 191 RLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMA 270 (398)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHH
Confidence 7777777777777777655555442 3346778888999
Q ss_pred HHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 000242 1668 QRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1746 (1801)
Q Consensus 1668 ~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e 1746 (1801)
..+... +.++|.++++++++..+ + ..+...|+.+ ..++++++...+++.++.+|++.+++..++.++.+.++++
T Consensus 271 ~~l~~~g~~~~A~~~L~~~l~~~~-~--~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 271 EHLIECDDHDTAQQIILDGLKRQY-D--ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCC-C--HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999 99999999999999543 3 3667777765 3489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000242 1747 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797 (1801)
Q Consensus 1747 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~ 1797 (1801)
+|+..|++++. ..|+.. .+..+...+.+.|+.+++.++|++++..+.
T Consensus 346 ~A~~~le~al~--~~P~~~--~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 346 EASLAFRAALK--QRPDAY--DYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHHHHHHHh--cCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 99999999999 666655 355678888999999999999999998764
No 71
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.4e-10 Score=132.85 Aligned_cols=252 Identities=15% Similarity=0.098 Sum_probs=192.7
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000242 1533 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1612 (1801)
Q Consensus 1533 ~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a 1612 (1801)
|..++...||.....+|....-.--|-..+.-..+-.+.--+++.......+|.|. ..-.+|.+...+ +-|+|
T Consensus 277 DfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ET-----CCiIaNYYSlr~--eHEKA 349 (559)
T KOG1155|consen 277 DFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPET-----CCIIANYYSLRS--EHEKA 349 (559)
T ss_pred hHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccc-----eeeehhHHHHHH--hHHHH
Confidence 37889999999999999644333333333333333344445556666555565542 223445555555 34889
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCC
Q 000242 1613 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1690 (1801)
Q Consensus 1613 ~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1690 (1801)
...|+||++.+|.. .+|..++.=|....+...|.+.|.+|+..+|.+..+|+.+++.+.-. .+.-|.-.|++|++.-|
T Consensus 350 v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 350 VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP 429 (559)
T ss_pred HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence 99999999999985 89999999999999999999999999999999999999999999888 88999999999999988
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCchhH
Q 000242 1691 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS-----LPPKKM 1765 (1801)
Q Consensus 1691 ~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~-----~~pk~~ 1765 (1801)
.+. .+|..+|+.+.+.++.++|...|.+++.....+..++..+++++.+.++.++|-..|++.+... ..|+-.
T Consensus 430 nDs--Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ 507 (559)
T KOG1155|consen 430 NDS--RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETI 507 (559)
T ss_pred Cch--HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 874 7999999999999999999999999998888888888889999999999999999999888721 222222
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000242 1766 K-FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1766 k-~lw~~yl~~E~~~G~~e~a~~v~~rAl~~ 1795 (1801)
+ .+| ...++.+++++++|.....+++.+
T Consensus 508 ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 508 KARLF--LAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHH--HHHHHHhhcchHHHHHHHHHHhcC
Confidence 1 344 456788889988888776666544
No 72
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.33 E-value=3e-10 Score=137.91 Aligned_cols=250 Identities=17% Similarity=0.254 Sum_probs=189.8
Q ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000242 1537 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1616 (1801)
Q Consensus 1537 a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vf 1616 (1801)
.+..|...|...|.....|.+||.++.+.|..+.+.++|+|+++.+|.+- .+|+.|+++...... +++..+..|
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Sv-----dlW~~Y~~f~~n~~~-d~~~lr~~f 137 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSV-----DLWLSYLAFLKNNNG-DPETLRDLF 137 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHhccCC-CHHHHHHHH
Confidence 45577888899999999999999999999999999999999999999744 699999999765322 678999999
Q ss_pred HHHHhcCCCH----HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh------C-----------
Q 000242 1617 QRALQYCDPK----KVHLALLGLYERTEQNKLADELLYKMIKKFKHS-CKVWLRRVQRLLKQ------Q----------- 1674 (1801)
Q Consensus 1617 erAl~~~~~~----~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~-~~~w~~~a~~~~~~------~----------- 1674 (1801)
+||..++... ++|..|+.+.....+......+|++.++..... ...+..|-+++..+ .
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 9999999753 999999999988899999999999988653211 11222222222210 0
Q ss_pred -----------------------------HHHHHHHHHH------------------------HHHhC-----CC-CChH
Q 000242 1675 -----------------------------QEGVQAVVQR------------------------ALLSL-----PR-HKHI 1695 (1801)
Q Consensus 1675 -----------------------------~~~A~~ll~r------------------------alk~~-----p~-~~~~ 1695 (1801)
.+++...+.+ .++.. |- ....
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 1112211111 11100 00 1125
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000242 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1775 (1801)
Q Consensus 1696 ~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~ 1775 (1801)
..|..|..++.+.|+.++..-+|++++-.+..-..+|..|+.++...|+.+-|..++.+++.. .-++.. .+-..|..|
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~-~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI-HVKKTP-IIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCc-HHHHHHHHH
Confidence 789999999999999999999999998877777789999999998889999999999998872 333444 688888899
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 000242 1776 EKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1776 E~~~G~~e~a~~v~~rAl~ 1794 (1801)
|+..||+..|+.++++..+
T Consensus 376 ~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHhhccHHHHHHHHHHHHh
Confidence 9999999999998888754
No 73
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.33 E-value=2.1e-10 Score=135.56 Aligned_cols=265 Identities=18% Similarity=0.245 Sum_probs=199.8
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Q 000242 1521 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1600 (1801)
Q Consensus 1521 ~~~~~e~~~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~l 1600 (1801)
-|.+...+.......+.+..||+++...|.++.+|..|+..++...+++....+|.|||...-. +.+|..|+..
T Consensus 22 sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn------lDLW~lYl~Y 95 (656)
T KOG1914|consen 22 SWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN------LDLWKLYLSY 95 (656)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh------HhHHHHHHHH
Confidence 4666555554556789999999999999999999999999999999999999999999975442 6799999987
Q ss_pred HHHcCCCCH----HHHHHHHHHHHhcCC----CHHHHHHHHHHH---------HHhCChHHHHHHHHHHHHhc-CCCHHH
Q 000242 1601 ENEYGNPPE----EAVVKVFQRALQYCD----PKKVHLALLGLY---------ERTEQNKLADELLYKMIKKF-KHSCKV 1662 (1801)
Q Consensus 1601 e~~~g~~~~----e~a~~vferAl~~~~----~~~v~~~l~~i~---------~~~g~~~~A~~~~~~~~k~~-~~~~~~ 1662 (1801)
-..... .. +...+.|+=|++.+. +..+|..|++++ +...+.+..+..|++|+... ..-.++
T Consensus 96 VR~~~~-~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 96 VRETKG-KLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHcc-CcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 554332 22 444556666666654 248999999864 45557888999999999764 456789
Q ss_pred HHHHHHHHHHh--------------CHHHHHHHHHHHHHh----------CCC------CChHHHHHHHHHHHHHcCC--
Q 000242 1663 WLRRVQRLLKQ--------------QQEGVQAVVQRALLS----------LPR------HKHIKFISQTAILEFKNGV-- 1710 (1801)
Q Consensus 1663 w~~~a~~~~~~--------------~~~~A~~ll~ralk~----------~p~------~~~~~~~~~~a~le~~~g~-- 1710 (1801)
|..|..|.... .+..||+.++..... .|. .+.+++|.+|+++|..++-
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999988653 366778777764332 111 1236889999999986542
Q ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCCchhHHHHHH
Q 000242 1711 ------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD--------------VDLIRGLFERAISLSLPPKKMKFLFK 1770 (1801)
Q Consensus 1711 ------~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd--------------~e~ar~lferal~~~~~pk~~k~lw~ 1770 (1801)
-.|..-.|+++|...+-.+++|..|.++....++ .++++.+|||++. .-.+..+.++.
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~--~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE--GLLKENKLLYF 332 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 3567778999999999999999999998887766 6889999999998 22233447888
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHH
Q 000242 1771 KYLEYEKSVGE---EERIEYVKQKAME 1794 (1801)
Q Consensus 1771 ~yl~~E~~~G~---~e~a~~v~~rAl~ 1794 (1801)
.|.++|+..-+ .+.+...+++++.
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~ 359 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLK 359 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHh
Confidence 88888776544 6666666666654
No 74
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.32 E-value=1.6e-11 Score=145.12 Aligned_cols=140 Identities=24% Similarity=0.301 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCh-HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000242 1592 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQN-KLADELLYKMIKKFKHSCKVWLRRVQR 1669 (1801)
Q Consensus 1592 ~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~g~~-~~A~~~~~~~~k~~~~~~~~w~~~a~~ 1669 (1801)
.+|++||++..+.+ .++.||.+|++|++..+. ..+|.++|.++.+.++. +.|..+|+++++.|+.+..+|+.|++|
T Consensus 2 ~v~i~~m~~~~r~~--g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTE--GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 47999999999988 689999999999976554 49999999998885554 459999999999999999999999999
Q ss_pred HHHh-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000242 1670 LLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733 (1801)
Q Consensus 1670 ~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~ 1733 (1801)
++.. +.+.||.+|+|++..++... ...+|..|+++|.+.|+.+.++.+++++...+|....++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999 99999999999999998876 5689999999999999999999999999999999665544
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=3.3e-10 Score=121.92 Aligned_cols=196 Identities=15% Similarity=0.095 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHH
Q 000242 1552 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHL 1630 (1801)
Q Consensus 1552 ~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~ 1630 (1801)
..+.+.++.-|++.|+...|+.-+++||+.-|... ..|..++..+...| ..+.|.+-|++|++..|.+ ++..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~-----~a~~~~A~~Yq~~G--e~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY-----LAHLVRAHYYQKLG--ENDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcC--ChhhHHHHHHHHHhcCCCccchhh
Confidence 45677888889999999999999999998777543 58999999999999 5699999999999999986 9999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000242 1631 ALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1707 (1801)
Q Consensus 1631 ~l~~i~~~~g~~~~A~~~~~~~~k~--~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1707 (1801)
.|+.++...|++++|...|++++.. |+.....|.+.+-+.++. +++.|+..|+|+|+.+|... ......++.+++
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--~~~l~~a~~~~~ 185 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--PALLELARLHYK 185 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--hHHHHHHHHHHh
Confidence 9999999999999999999999984 578899999999999999 99999999999999999985 789999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1708 NGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1708 ~g~~e~Ar~lfe~al~~~P~~~d-lw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
.|++-.||..|++.....+-..+ +|. -+.++...||.+.+-..=.+.-.
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~~~A~sL~L-~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 186 AGDYAPARLYLERYQQRGGAQAESLLL-GIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cccchHHHHHHHHHHhcccccHHHHHH-HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999888776655 555 47788889998877665444444
No 76
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=3.7e-11 Score=146.35 Aligned_cols=213 Identities=17% Similarity=0.156 Sum_probs=186.5
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 000242 1542 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1621 (1801)
Q Consensus 1542 er~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~ 1621 (1801)
..++..+|+++..|-..+.++-.+++.+.|.+.|+||++.-|... ..+.-+..-..... +.|.|...|+.|+.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa-----YayTLlGhE~~~~e--e~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA-----YAYTLLGHESIATE--EFDKAMKSFRKALG 483 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc-----hhhhhcCChhhhhH--HHHhHHHHHHhhhc
Confidence 456677899999999999999999999999999999997655211 11111111112233 46999999999999
Q ss_pred cCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHH
Q 000242 1622 YCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1699 (1801)
Q Consensus 1622 ~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~ 1699 (1801)
..|.. +.|+.++.+|.+.++++.|+-.|++|+...|.+..+...++.++.+. +.++|.++|++|+...|++. -..+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~--l~~~ 561 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP--LCKY 561 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc--hhHH
Confidence 99986 99999999999999999999999999999999999999999999999 99999999999999999985 5678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000242 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1700 ~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~ 1765 (1801)
..|.+++..+++++|...||.+-+.-|+...++...+..+.+.|..+.|..-|--|.. +.|+-.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg~ 625 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKGA 625 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCccc
Confidence 8899999999999999999999999999999999999999999999999999999998 777655
No 77
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.31 E-value=3.3e-10 Score=133.25 Aligned_cols=256 Identities=18% Similarity=0.297 Sum_probs=180.3
Q ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC-------
Q 000242 1536 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP------- 1607 (1801)
Q Consensus 1536 ~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~-e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~------- 1607 (1801)
+-...|.++|..+|+++++|+.-|.++...+ +++.||++|.|+|+..|..+ .+|..|..+++++.+-
T Consensus 123 ~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp-----~Lw~eyfrmEL~~~~Kl~~rr~~ 197 (568)
T KOG2396|consen 123 EVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSP-----KLWKEYFRMELMYAEKLRNRREE 197 (568)
T ss_pred HHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999999987666 49999999999998777544 5899999888765310
Q ss_pred ---C----------------------------------------------------------------------------
Q 000242 1608 ---P---------------------------------------------------------------------------- 1608 (1801)
Q Consensus 1608 ---~---------------------------------------------------------------------------- 1608 (1801)
+
T Consensus 198 ~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~ 277 (568)
T KOG2396|consen 198 LGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEIL 277 (568)
T ss_pred hccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHH
Confidence 0
Q ss_pred --------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHH--------------------------------
Q 000242 1609 --------------------EEAVVKVFQRALQYCDPKKVHLALLGLY-------------------------------- 1636 (1801)
Q Consensus 1609 --------------------~e~a~~vferAl~~~~~~~v~~~l~~i~-------------------------------- 1636 (1801)
.+...++|+.|++..++..+|..|+.+.
T Consensus 278 ~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~ 357 (568)
T KOG2396|consen 278 SQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECL 357 (568)
T ss_pred HHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccch
Confidence 2333445555555555555665555422
Q ss_pred --------HHhCChHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHhCCC--------------
Q 000242 1637 --------ERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPR-------------- 1691 (1801)
Q Consensus 1637 --------~~~g~~~~A~~~~~~~~-k~~~~~~~~w~~~a~~~~~~--~~~~A~~ll~ralk~~p~-------------- 1691 (1801)
.......+|+..-.+++ ..|.++.++|..+.+.+.+. +++--...+-..++..+.
T Consensus 358 ~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~d 437 (568)
T KOG2396|consen 358 YKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGD 437 (568)
T ss_pred HHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhcc
Confidence 11122223333333333 45568889999888877743 222211111122222222
Q ss_pred -------------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CChHHHHH
Q 000242 1692 -------------------HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRG 1750 (1801)
Q Consensus 1692 -------------------~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~--gd~e~ar~ 1750 (1801)
.+...+-..|-.++++.+-...||..|.++....|-+.+++...+++|..+ -+...+|.
T Consensus 438 sl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~ 517 (568)
T KOG2396|consen 438 SLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIRE 517 (568)
T ss_pred chhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHH
Confidence 222345555666677778899999999999999999999999999999744 35889999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000242 1751 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1799 (1801)
Q Consensus 1751 lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~~~ 1799 (1801)
+|++|+. .+. .+. .+|..|+.+|..+|..+.+-.++.||+..++..
T Consensus 518 ~yd~a~~-~fg-~d~-~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 518 YYDRALR-EFG-ADS-DLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHH-HhC-CCh-HHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 9999998 344 556 799999999999999999999999999998753
No 78
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.31 E-value=6.9e-12 Score=115.45 Aligned_cols=70 Identities=30% Similarity=0.565 Sum_probs=67.2
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcc--cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000242 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314 (1801)
Q Consensus 1245 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~--~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1314 (1801)
|++|.|+|+++.++|+||+|+++++|++|+++++|.. .++|.+.|++||.|+|+|+++|++++||.||+|
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7899999999999999999999999999999999864 889999999999999999999999999999986
No 79
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.29 E-value=6.5e-12 Score=119.53 Aligned_cols=79 Identities=47% Similarity=0.685 Sum_probs=75.3
Q ss_pred CCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000242 618 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696 (1801)
Q Consensus 618 ~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSl 696 (1801)
++..++++++|+.+.|+|++++++|+||++.+++.||+|.+++++.+..+|.+.|++||+|+|+|+++|.+++++.|||
T Consensus 5 l~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 5 LPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred chhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 5667888999999999999999999999999999999999999999999999999999999999999999999999996
No 80
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.28 E-value=1.3e-09 Score=148.41 Aligned_cols=252 Identities=9% Similarity=0.023 Sum_probs=178.2
Q ss_pred CCCCcHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000242 1533 DAPRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1611 (1801)
Q Consensus 1533 ~~~~a~~~fer~L~~~-P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~ 1611 (1801)
+..++...|+++.... +.+...|..++..+.+.|+++.|+.+|+++.+.-.... ...|..++..+.+.| ..+.
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd----vvTynaLI~gy~k~G--~~ee 525 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN----VHTFGALIDGCARAG--QVAK 525 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCc--CHHH
Confidence 3556666777666543 34567777777788888888888888877775321111 356777777777777 5577
Q ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHh-CHHHHHHHHHHH
Q 000242 1612 VVKVFQRALQY--CDPKKVHLALLGLYERTEQNKLADELLYKMIKK---FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1685 (1801)
Q Consensus 1612 a~~vferAl~~--~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~---~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ra 1685 (1801)
|.++|+++.+. .|....|..++..|.+.|++++|.++|++|... ...+...|..++..+.+. ++++|.++|+++
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888777643 345577888888888888888888888887653 234566777777777777 888888888887
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCch
Q 000242 1686 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1763 (1801)
Q Consensus 1686 lk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~--~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk 1763 (1801)
.+..... ....|..++..+.+.|++++|..+|+.+.+. .| +...|..+++.+.+.|+++.|..+|+.+....+.|+
T Consensus 606 ~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 606 HEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 7764222 2467777777778888888888888887765 34 355777778888888888888888888877555554
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1764 KMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1764 ~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
.. .|...+....+.|+.++|..+|+++.+
T Consensus 684 ~~--tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 684 TV--SYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HH--HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33 777888888888888888888877654
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=1.1e-09 Score=131.38 Aligned_cols=207 Identities=13% Similarity=0.050 Sum_probs=161.4
Q ss_pred cHHHHHHHHHcCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000242 1537 TPDEFERLVRSSP----NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1612 (1801)
Q Consensus 1537 a~~~fer~L~~~P----~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a 1612 (1801)
++..|.++|...| +.+..|+..+..+...|+.+.|+..|+++++..|.. ...|..+...+...+ +.+.|
T Consensus 45 ~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~~~~~g--~~~~A 117 (296)
T PRK11189 45 ILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-----ADAYNYLGIYLTQAG--NFDAA 117 (296)
T ss_pred HHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCC--CHHHH
Confidence 4455566664333 347889999999999999999999999999876643 358999999999999 56999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCC
Q 000242 1613 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1690 (1801)
Q Consensus 1613 ~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1690 (1801)
...|++|++..|.. ..|..++.++...|++++|.+.|+++++..|+++.. ..+..+.... ++++|...|.+++...+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 99999999999875 899999999999999999999999999999987631 1122223334 89999999988776553
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1691 RHKHIKFISQTAILEFKNGVADRGRSMFEGIL-------SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1691 ~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al-------~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
.. .|. ++...+..|+...+ ..|+.+. ...|+..+.|+.++..+.+.|++++|+..|++|+.
T Consensus 197 ~~----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 197 KE----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred cc----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 233 34555556665444 2444444 44556677999999999999999999999999999
No 82
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.26 E-value=1e-11 Score=121.23 Aligned_cols=86 Identities=41% Similarity=0.597 Sum_probs=71.0
Q ss_pred CeEEEEEeEEccccEEEEcCCCcEEEEeccccCchhhcc----------ccccccCCCCCcccccCcEEEEEEEEeeccc
Q 000242 1 MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDN----------EIEANEDNLLPTIFHVGQLVSCIVLQLDDDK 70 (1801)
Q Consensus 1 m~~lg~v~~i~~~~l~vslp~~l~g~v~~~~is~~~~~~----------~~~~~~~~~l~~~f~~Gq~v~~~V~~~~~~~ 70 (1801)
|.++|+|.+|++.++.|+||+++.|+||+++||+.+... ...+.+...+.++|++||.|+|+|+++++.+
T Consensus 5 ~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~d~~~ 84 (100)
T cd05693 5 MLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSLDKSK 84 (100)
T ss_pred CEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEccCCc
Confidence 689999999999999999999999999999999974111 0111224578899999999999999998764
Q ss_pred cccCeeEEEEEechhhhc
Q 000242 71 KEIGKRKIWLSLRLSLLY 88 (1801)
Q Consensus 71 ~~~~~~~i~Ls~~p~~vn 88 (1801)
+ ++++|.|||+|+.||
T Consensus 85 ~--~~~~i~LSlr~~~vn 100 (100)
T cd05693 85 S--GKKRIELSLEPELVN 100 (100)
T ss_pred C--CCcEEEEEecHHHCC
Confidence 2 146899999999998
No 83
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.26 E-value=1.3e-11 Score=113.42 Aligned_cols=71 Identities=23% Similarity=0.399 Sum_probs=66.4
Q ss_pred CCCCcEEEEEEEEEee-ceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000242 1332 LHVGDIVIGQIKRVES-YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~-~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK 1405 (1801)
+++|++|.|+|+++.+ ||+||+|.+ +.+|++|+|+++++++.++.+.|++||.|+|+|+++|. +||.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~-~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPF-GKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCC-CCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4789999999999986 899999986 89999999999999999999999999999999999983 99999986
No 84
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.25 E-value=1.7e-11 Score=112.65 Aligned_cols=70 Identities=30% Similarity=0.558 Sum_probs=67.4
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000242 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697 (1801)
Q Consensus 628 G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk 697 (1801)
|+.+.|+|++++++|+||+|++++.||+|.+++++++..+|.+.|++||+++|+|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECCCCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7889999999999999999999999999999999888899999999999999999999999999999985
No 85
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=99.25 E-value=3.6e-11 Score=111.96 Aligned_cols=73 Identities=37% Similarity=0.625 Sum_probs=70.7
Q ss_pred CCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000242 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697 (1801)
Q Consensus 625 ~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk 697 (1801)
++.|+.+.|+|.++.++|+||++.+++.||+|.+++++.+..++...|++||+|+|+|+++|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999986
No 86
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.23 E-value=3e-11 Score=111.12 Aligned_cols=71 Identities=28% Similarity=0.409 Sum_probs=67.2
Q ss_pred CCCCCEEEEEEEEEee-ceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000242 1242 LSPNMIVQGYVKNVTS-KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314 (1801)
Q Consensus 1242 l~~G~~v~G~V~~v~~-~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1314 (1801)
+++|+++.|+|+++.+ +|+||+++++.+|++|+++++|.|+.+|.+.|++||.|+|+|+++|. +++.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPFGKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCCCCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4689999999999986 89999999999999999999999999999999999999999999984 99999986
No 87
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=99.22 E-value=4e-11 Score=110.86 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=65.1
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEee
Q 000242 1333 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404 (1801)
Q Consensus 1333 ~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lsl 1404 (1801)
..|++++|+|+++.+||+||+|.+...+||+|+|++++.++.++.+.|++||.|+++|+++|.++ ||+||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 57999999999999999999995323799999999999999999999999999999999999865 999986
No 88
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.21 E-value=5.4e-11 Score=110.36 Aligned_cols=73 Identities=22% Similarity=0.504 Sum_probs=68.9
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK 1405 (1801)
+++|++|.|+|+++.++|+||+|++ +++|++|++++++++..++.+.|++||.|+++|+++|+++++|.||+|
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~-~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGN-KVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCC-CcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4789999999999999999999986 799999999999998888889999999999999999999999999975
No 89
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.21 E-value=3.9e-11 Score=110.06 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=65.5
Q ss_pred CcEEE-EEEEEE-eeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEee
Q 000242 1335 GDIVI-GQIKRV-ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404 (1801)
Q Consensus 1335 G~~v~-G~V~~v-~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lsl 1404 (1801)
|++|+ |+|+++ .+||+||+|.+ +++||+|+|++++++.+++.+.|++||.++++|+++|+++++|.||+
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~-gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKD-GLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCC-CCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 78899 999999 69999999987 79999999999999999899999999999999999999999999986
No 90
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=99.21 E-value=6.7e-11 Score=110.09 Aligned_cols=73 Identities=30% Similarity=0.517 Sum_probs=71.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000242 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314 (1801)
Q Consensus 1242 l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1314 (1801)
+++|+++.|+|+++.++|+||+++.+++|++|++++++.+..+|...|++||.++|+|+++|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999986
No 91
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.21 E-value=1.9e-09 Score=135.61 Aligned_cols=228 Identities=11% Similarity=0.091 Sum_probs=179.9
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchhhH--HHHHHHHHH
Q 000242 1523 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEK--LNIWVAYFN 1599 (1801)
Q Consensus 1523 ~~~e~~~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~-~ee~e~--l~lW~a~l~ 1599 (1801)
+..+..+..++.+++...+++++..+|+++.++..++..+++.++++.|.+.+++.++.-.. ..+... ...|..++.
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 33444455666889999999999999999999999999999999999999999999976322 222111 134444442
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH--HHHH
Q 000242 1600 LENEYGNPPEEAVVKVFQRALQYCD-----PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ--RLLK 1672 (1801)
Q Consensus 1600 le~~~g~~~~e~a~~vferAl~~~~-----~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~--~~~~ 1672 (1801)
... .+...+.+.++.+..| ...++..++..+...|++++|.+.++++++++|++....+.... ..+.
T Consensus 238 ~~~------~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~ 311 (409)
T TIGR00540 238 EAM------ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK 311 (409)
T ss_pred HHH------HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC
Confidence 211 1333456667777676 45999999999999999999999999999999988764321222 1223
Q ss_pred h-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 000242 1673 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE--GILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1749 (1801)
Q Consensus 1673 ~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe--~al~~~P~~~dlw~~y~~le~k~gd~e~ar 1749 (1801)
. +.+.+.+.++++++..|.+.++.+...+|.++++.|++++|+..|+ .+++..|+..+ +..++.++.+.|+.+.|+
T Consensus 312 ~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAA 390 (409)
T ss_pred CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHH
Confidence 3 7889999999999999998544788899999999999999999999 57778898766 459999999999999999
Q ss_pred HHHHHHHh
Q 000242 1750 GLFERAIS 1757 (1801)
Q Consensus 1750 ~lferal~ 1757 (1801)
.+|++++.
T Consensus 391 ~~~~~~l~ 398 (409)
T TIGR00540 391 AMRQDSLG 398 (409)
T ss_pred HHHHHHHH
Confidence 99999876
No 92
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.20 E-value=8.4e-11 Score=109.05 Aligned_cols=73 Identities=25% Similarity=0.406 Sum_probs=69.8
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000242 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314 (1801)
Q Consensus 1242 l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1314 (1801)
+++|+++.|+|++++++|+||+++.+++|++|+++++|+|..++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4689999999999999999999999999999999999999888899999999999999999999999999985
No 93
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.1e-08 Score=114.80 Aligned_cols=225 Identities=14% Similarity=0.188 Sum_probs=187.8
Q ss_pred HHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC
Q 000242 1528 RLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1607 (1801)
Q Consensus 1528 ~~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~ 1607 (1801)
.+++.....|++.|-.++..+|...++...++..+.+.|+.|+|..+-+..+..... ...+|+..-..+..-+..-|
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl-T~~qr~lAl~qL~~Dym~aG-- 121 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL-TFEQRLLALQQLGRDYMAAG-- 121 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHHHHhh--
Confidence 355667889999999999999999999999999999999999999999888865443 34456667777777777778
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHh-CHHHHHH
Q 000242 1608 PEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK-----VWLRRVQRLLKQ-QQEGVQA 1680 (1801)
Q Consensus 1608 ~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~-----~w~~~a~~~~~~-~~~~A~~ 1680 (1801)
-.+.|+.+|......-.. .+....++.+|.....+++|.+.-+++.+..++... .|-.+++-++.. +.++|+.
T Consensus 122 l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 459999999988764333 488999999999999999999999999988765432 334444444445 8999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1681 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-DLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1681 ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~-dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
++++|++.+|++. .+-+..++++...|+++.|...++++++.+|.-. .+...+...|.+.|+++.++..+.++..
T Consensus 202 ~l~kAlqa~~~cv--RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 202 LLKKALQADKKCV--RASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHhhCccce--ehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999984 6778889999999999999999999999999864 4677778888899999999999999988
No 94
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.20 E-value=6.8e-11 Score=111.09 Aligned_cols=77 Identities=52% Similarity=0.993 Sum_probs=71.8
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000242 1333 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409 (1801)
Q Consensus 1333 ~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~~~ 1409 (1801)
++|++|.|+|+++.++|+||+|.+.++.|++|++++++.+..++.+.|++||.|+|+|+++|.+++++.|++|++++
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~~~ 77 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKASYF 77 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEeecC
Confidence 46999999999999999999998547999999999999988888899999999999999999999999999999764
No 95
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.19 E-value=5.5e-11 Score=109.31 Aligned_cols=70 Identities=37% Similarity=0.543 Sum_probs=66.9
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000242 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK 1405 (1801)
|+++.|+|+++.++|+||+|.+ ++.||+|+|++++++..++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~-~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYN-NVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECC-CCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7899999999999999999986 799999999999998889999999999999999999999999999986
No 96
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.19 E-value=6e-11 Score=112.92 Aligned_cols=78 Identities=33% Similarity=0.535 Sum_probs=73.9
Q ss_pred ccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000242 1236 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313 (1801)
Q Consensus 1236 ~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSl 1313 (1801)
+..+.++++|+++.|+|+++.++|+||+++++++|++|++++++++..+|.+.|++||.|+|+|+++|.+++++.||+
T Consensus 6 ~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 6 PTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred hhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 455677999999999999999999999999999999999999999999999999999999999999999999999986
No 97
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.18 E-value=1.5e-09 Score=125.26 Aligned_cols=232 Identities=18% Similarity=0.294 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHhcC-----C--HHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000242 1553 FVWIKYMAFMLSMA-----D--VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1625 (1801)
Q Consensus 1553 ~~W~~y~~~~~~~~-----e--~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~ 1625 (1801)
.-|++++.+++..+ + ..+---+|++++.-+++.+ .+|..|.......+ +.+.|..+.+|+..++|+
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~-----evw~dys~Y~~~is--d~q~al~tv~rg~~~sps 334 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAE-----EVWFDYSEYLIGIS--DKQKALKTVERGIEMSPS 334 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHhhcc--HHHHHHHHHHhcccCCCc
Confidence 44999999987654 2 2344467788998888876 49999999888888 789999999999999998
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHh----cC--------------------------CCHHHHHHHHHHHHHh-C
Q 000242 1626 KKVHLALLGLYERTEQNKLADELLYKMIKK----FK--------------------------HSCKVWLRRVQRLLKQ-Q 1674 (1801)
Q Consensus 1626 ~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~----~~--------------------------~~~~~w~~~a~~~~~~-~ 1674 (1801)
++..|+..|+..++-+..+..|+++... +. +..-+|.-+.++..+. .
T Consensus 335 --L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~G 412 (660)
T COG5107 335 --LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRG 412 (660)
T ss_pred --hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 6677777887777777777777665431 11 1233566777777777 8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 000242 1675 QEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753 (1801)
Q Consensus 1675 ~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~-~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lfe 1753 (1801)
.+.||.+|-++-+.--..+ .+|...|-+++ ..|++.-|-.+|+-.|..+|+.+-.-..|..+++..++-++||++||
T Consensus 413 l~aaR~~F~k~rk~~~~~h--~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGH--HVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHHHHhccCCCCc--ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9999999999876542222 56777777666 46799999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000242 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796 (1801)
Q Consensus 1754 ral~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v 1796 (1801)
.++. .+...+.+.+|.+|+++|.+.|+...|..+-+|..+.+
T Consensus 491 tsv~-r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 491 TSVE-RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HhHH-HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 8887 45556788899999999999999999888888776644
No 98
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.18 E-value=7.4e-11 Score=108.03 Aligned_cols=69 Identities=28% Similarity=0.622 Sum_probs=65.8
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEee
Q 000242 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lsl 1404 (1801)
|+++.|+|+++.++|+||+|++ ++.|++|++++++.+..++.+.|++||.++++|+++|+++++|.||+
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSD-HIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecC-CcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 7899999999999999999986 79999999999999888888999999999999999999999999985
No 99
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.17 E-value=8.4e-11 Score=107.84 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=65.6
Q ss_pred CCEEE-EEEEEE-ecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000242 628 NSVVH-GYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696 (1801)
Q Consensus 628 G~~~~-G~V~~i-~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSl 696 (1801)
|+++. |.|+++ .++|+||++.+|+.||+|.|++++++..++.+.|++||.+.|+|+++|+.++++.|||
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKDGLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCCCCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 67788 999998 7999999999999999999999999999999999999999999999999999999996
No 100
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.17 E-value=6.8e-11 Score=107.93 Aligned_cols=68 Identities=31% Similarity=0.503 Sum_probs=65.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000242 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695 (1801)
Q Consensus 628 G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lS 695 (1801)
|+.+.|+|++++++|+||+|.+++.||+|.+++++.+..++.+.|++||.++|+|+++|++++|+.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCCCCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 68899999999999999999999999999999999999999999999999999999999999999886
No 101
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.17 E-value=8.7e-11 Score=107.56 Aligned_cols=69 Identities=26% Similarity=0.473 Sum_probs=66.3
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000242 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696 (1801)
Q Consensus 628 G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSl 696 (1801)
|+.+.|+|+++.++|+||++.++++||+|.+++++.+..++.+.|++||.++|+|+++|++++++.||+
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecCCcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 788999999999999999999999999999999998888899999999999999999999999999985
No 102
>PRK08582 hypothetical protein; Provisional
Probab=99.16 E-value=1e-10 Score=121.23 Aligned_cols=75 Identities=28% Similarity=0.647 Sum_probs=70.7
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1331 ~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
.+++|++|.|+|++|++||+||.|++ ++.||+|+|++++.++.++.+.|++||.|+|+|+++|. +++|.||+|+.
T Consensus 2 ~~kvG~iv~G~V~~I~~fG~fV~L~~-~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~ 76 (139)
T PRK08582 2 SIEVGSKLQGKVTGITNFGAFVELPE-GKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKA 76 (139)
T ss_pred CCcCCCEEEEEEEEEECCeEEEEECC-CCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 47899999999999999999999986 89999999999999999999999999999999999996 59999999985
No 103
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=6.9e-09 Score=124.37 Aligned_cols=219 Identities=14% Similarity=0.067 Sum_probs=168.5
Q ss_pred CCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHH
Q 000242 1566 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKL 1644 (1801)
Q Consensus 1566 ~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~ 1644 (1801)
...+.+..-+.+++...+... ..+...|.....++...| ..+.|...|++|++..|.. ..|..++.+|...|++++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~-~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTD-EERAQLHYERGVLYDSLG--LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred hHHHHHHHHHHHHHccccCCc-HhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 456777888888886555332 233567888888888999 5699999999999999975 999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1645 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1723 (1801)
Q Consensus 1645 A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~ 1723 (1801)
|.+.|+++++..|+...+|..++..+... ++++|.+.|+++++..|.+....+| ..+....+++++|...|++++.
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~---~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW---LYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 9999999999999999987422333 3334456789999999988776
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000242 1724 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1724 ~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~-----~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~ 1795 (1801)
..+. +.|. +.......|+...+ ..|+.+... .+.|+.. ..|........+.|++++|...|++|++.
T Consensus 194 ~~~~--~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~-ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 194 KLDK--EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLC-ETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred hCCc--cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5443 3343 23444456666544 345555430 1333344 46777777788999999999999999763
No 104
>PRK08582 hypothetical protein; Provisional
Probab=99.14 E-value=2e-10 Score=118.97 Aligned_cols=79 Identities=25% Similarity=0.437 Sum_probs=74.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccccc
Q 000242 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1321 (1801)
Q Consensus 1242 l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~~~ 1321 (1801)
+++|++|.|+|++|+++|+||.|+++++|+||+++++|.|+.++.+.|++||.|+|+|+++|. +++|.||+++....||
T Consensus 3 ~kvG~iv~G~V~~I~~fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~~~~~~ 81 (139)
T PRK08582 3 IEVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKAKDRPK 81 (139)
T ss_pred CcCCCEEEEEEEEEECCeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEecccCch
Confidence 689999999999999999999999999999999999999999999999999999999999996 5999999999877664
No 105
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.14 E-value=1.2e-10 Score=106.24 Aligned_cols=68 Identities=31% Similarity=0.564 Sum_probs=65.0
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000242 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~ls 1403 (1801)
|++|.|+|+++.++|+||+|.+ ++.|++|++++++.+..++.+.|++||.|+++|+++|++++||.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGR-GVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCC-CCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999986 7999999999999999999999999999999999999999999876
No 106
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.13 E-value=5.6e-09 Score=140.89 Aligned_cols=247 Identities=15% Similarity=0.130 Sum_probs=151.4
Q ss_pred CCCcHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000242 1534 APRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1612 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~-P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a 1612 (1801)
..+|...|+++.... .-+...|..++..+.+.+.+++|+++++.+++.--. .+ ..++.++++++...| ..+.|
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~-~d---~~~~~~Li~~y~k~G--~~~~A 379 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-LD---IVANTALVDLYSKWG--RMEDA 379 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-CC---eeehHHHHHHHHHCC--CHHHH
Confidence 555556666554322 223445666666666666666666666666643211 11 235666666666666 45777
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCC
Q 000242 1613 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1690 (1801)
Q Consensus 1613 ~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~-~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1690 (1801)
.++|++..+ +....|..++..|.+.|+.++|.++|++|.+.. ..+...|..++..+... ..++|.++|+.+.+..+
T Consensus 380 ~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 380 RNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 777766543 333567777777777777777777777776542 44555666666666666 77777777777765433
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 000242 1691 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1770 (1801)
Q Consensus 1691 ~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~ 1770 (1801)
-......|..++.++.+.|++++|..+|++.- ...+..+|..++..+...|+.+.|+.++++++. +.|.+. ..|.
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~-~~y~ 532 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKL-NNYV 532 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCC-cchH
Confidence 32223456666677777777777777766531 112345677777777777777777777777765 555554 3566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1771 KYLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1771 ~yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
..+....+.|+.++|..+++.+.
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 66666777777777777776654
No 107
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=7.6e-09 Score=123.81 Aligned_cols=230 Identities=17% Similarity=0.132 Sum_probs=175.4
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 000242 1543 RLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1622 (1801)
Q Consensus 1543 r~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~ 1622 (1801)
+++...|+++..|+..+-+|+..+.+.+||..|.+|...-|... ..|++|..-....+ .-|.|...|-+|-+.
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-----paWl~fghsfa~e~--EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-----PAWLAFGHSFAGEG--EHDQAMAAYFTAARL 375 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-----HHHHHHhHHhhhcc--hHHHHHHHHHHHHHh
Confidence 55567788888899998888888889999999888885544322 47888888777777 448888888888888
Q ss_pred CCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC----C-ChH
Q 000242 1623 CDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR----H-KHI 1695 (1801)
Q Consensus 1623 ~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~----~-~~~ 1695 (1801)
.+.- .-.+-++--|.+.++++.|...|..|+..+|.++-+...++-..+.. .+.+|...|+.++...+. . .-.
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 8764 33333444567788888899999999988888888888888888877 888899999888843322 1 112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh--HHHHHHHHH
Q 000242 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK--MKFLFKKYL 1773 (1801)
Q Consensus 1696 ~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~--~k~lw~~yl 1773 (1801)
.+|.++|..+.+.+.+++|...|+++|...|++.+.+...+-.+..+|+++.|.+.|.++|. +.|.+ +..+.+.++
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 67888888888999999999999999999999988888888888888999999999999988 66655 223445444
Q ss_pred HH-HHHcCC
Q 000242 1774 EY-EKSVGE 1781 (1801)
Q Consensus 1774 ~~-E~~~G~ 1781 (1801)
+- +...|.
T Consensus 534 e~~~~~~~~ 542 (611)
T KOG1173|consen 534 EDSECKSGV 542 (611)
T ss_pred Hhhhhhccc
Confidence 43 344443
No 108
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.11 E-value=1e-10 Score=114.23 Aligned_cols=77 Identities=35% Similarity=0.513 Sum_probs=70.4
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCccc-------------------CCccccCCCCcEEEEEEEEE
Q 000242 1242 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-------------------ESPEKEFPIGKLVAGRVLSV 1302 (1801)
Q Consensus 1242 l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~-------------------~~~~~~f~~G~~V~~~Vl~v 1302 (1801)
|++|++|.|.|++++++|+||.|+.++.|++|+++++|.|. .++.+.|++||.|+|+|+++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~ 80 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSL 80 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEc
Confidence 57899999999999999999999999999999999999873 34778999999999999999
Q ss_pred eCC---CCEEEEEEecCcc
Q 000242 1303 EPL---SKRVEVTLKTSDS 1318 (1801)
Q Consensus 1303 d~~---~~ri~lSlk~~~~ 1318 (1801)
|++ +++|.||+|++..
T Consensus 81 d~~~~~~~~i~LSlr~~~v 99 (100)
T cd05693 81 DKSKSGKKRIELSLEPELV 99 (100)
T ss_pred cCCcCCCcEEEEEecHHHC
Confidence 987 7999999998653
No 109
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=99.11 E-value=3.2e-10 Score=106.17 Aligned_cols=74 Identities=31% Similarity=0.556 Sum_probs=69.2
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCC-ceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecc
Q 000242 1333 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406 (1801)
Q Consensus 1333 ~~G~~v~G~V~~v~~~G~fV~l~~~-~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~ 1406 (1801)
++|+++.|+|.++.++|+||+|.+. ++.|++|+|++++.++.++.+.|++||.|+++|+++|.+++++.||+|.
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 5799999999999999999999742 5999999999999999999999999999999999999999999999874
No 110
>PRK07252 hypothetical protein; Provisional
Probab=99.11 E-value=2.8e-10 Score=114.62 Aligned_cols=76 Identities=32% Similarity=0.620 Sum_probs=71.3
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000242 1333 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409 (1801)
Q Consensus 1333 ~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~~~ 1409 (1801)
++|++|.|+|++|.++|+||+|.+ ++.|++|+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|....
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~-~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~~ 77 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALEN-GTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLEE 77 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECC-CCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 579999999999999999999986 7999999999999999888899999999999999999999999999998643
No 111
>PRK07252 hypothetical protein; Provisional
Probab=99.11 E-value=3.1e-10 Score=114.35 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=72.4
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000242 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701 (1801)
Q Consensus 626 ~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~ 701 (1801)
++|+++.|+|++|+++|+||++.+++.||+|.+++++.++.++...|++||.|+|+|+++|++.+++.||++....
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~~ 77 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLEE 77 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999998754
No 112
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.10 E-value=1.3e-08 Score=117.51 Aligned_cols=251 Identities=17% Similarity=0.174 Sum_probs=159.3
Q ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC----CHHH
Q 000242 1536 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP----PEEA 1611 (1801)
Q Consensus 1536 ~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~----~~e~ 1611 (1801)
.-++-|++++.-.|--+.+|.-||.-++...++.....+|.|||...-. +.+|.-|+..-.+..+. ..-.
T Consensus 60 ~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~------ldLW~lYl~YIRr~n~~~tGq~r~~ 133 (660)
T COG5107 60 AEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN------LDLWMLYLEYIRRVNNLITGQKRFK 133 (660)
T ss_pred HHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc------HhHHHHHHHHHHhhCcccccchhhh
Confidence 3344455555555555555555555555555555555555555543211 45666666654433310 0122
Q ss_pred HHHHHHHHHhcC---C-CHHHHHHHHHHHH---------HhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-C--
Q 000242 1612 VVKVFQRALQYC---D-PKKVHLALLGLYE---------RTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-Q-- 1674 (1801)
Q Consensus 1612 a~~vferAl~~~---~-~~~v~~~l~~i~~---------~~g~~~~A~~~~~~~~k~~-~~~~~~w~~~a~~~~~~-~-- 1674 (1801)
.-+.|+=.++.. | +.++|..++.+++ +..+.+..++.|.+|+... ..-.++|..|-+|..+. +
T Consensus 134 i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~T 213 (660)
T COG5107 134 IYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKIT 213 (660)
T ss_pred hHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHH
Confidence 223333333321 1 2367777776543 4455677788888888653 45577888888888764 2
Q ss_pred -----------HHHHHHHHHHHHHhCCC----------------CChHHHHHHHHHHHHHcCC-------HHHHHHHHHH
Q 000242 1675 -----------QEGVQAVVQRALLSLPR----------------HKHIKFISQTAILEFKNGV-------ADRGRSMFEG 1720 (1801)
Q Consensus 1675 -----------~~~A~~ll~ralk~~p~----------------~~~~~~~~~~a~le~~~g~-------~e~Ar~lfe~ 1720 (1801)
+-.|++.|+.....-.+ ...-.-|++|+.++...|- ..|..-+|++
T Consensus 214 arKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q 293 (660)
T COG5107 214 ARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQ 293 (660)
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHH
Confidence 45677777764332110 0011458888888886541 4467778899
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000242 1721 ILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798 (1801)
Q Consensus 1721 al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~~ 1798 (1801)
++...|-..++|+.|.......+|-++|...-+|++. ..| .+..+|..++.-..+.+++..+|+++.+-+..
T Consensus 294 ~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sp----sL~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 294 ILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSP----SLTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCC----chheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999988 555 36667778888888999999999998877664
No 113
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.09 E-value=2.7e-10 Score=104.49 Aligned_cols=68 Identities=37% Similarity=0.770 Sum_probs=63.0
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCc-ccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000242 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE-DHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~-~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~ls 1403 (1801)
|+++.|+|+++.+||+||+|.+ +++||+|++++++ .+..++.+.|++||.|+++|+++|.+++||+||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~-~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDG-GIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCC-CCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 7899999999999999999986 8999999999996 566778889999999999999999999999875
No 114
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.08 E-value=2e-08 Score=126.86 Aligned_cols=254 Identities=14% Similarity=0.099 Sum_probs=156.5
Q ss_pred CCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000242 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614 (1801)
Q Consensus 1535 ~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~ 1614 (1801)
..+...|...+..+|+|....+--|.+....+++-.|..+|.+||...|...-.-+.-+|. ..+.++ ..+.|..
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~----Cf~kl~--~~~~a~~ 220 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGH----CFWKLG--MSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhh----HHHhcc--chhhHHH
Confidence 4666777777778888887777777777777888888888888776555433222233342 223344 3466677
Q ss_pred HHHHHHhcCCCH-HHHHHHH-------------------------------------HHHHHhCChHHHHHHHHHHHHhc
Q 000242 1615 VFQRALQYCDPK-KVHLALL-------------------------------------GLYERTEQNKLADELLYKMIKKF 1656 (1801)
Q Consensus 1615 vferAl~~~~~~-~v~~~l~-------------------------------------~i~~~~g~~~~A~~~~~~~~k~~ 1656 (1801)
.|+||++.+|.. ..+..|+ +.|.-.++|+.+..+++.+++.-
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 777777776643 3333333 34444555555555555555432
Q ss_pred C---CCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000242 1657 K---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1732 (1801)
Q Consensus 1657 ~---~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw 1732 (1801)
- --...++.+|..+..+ ++++|..+|..+++..+.+ ++-.++..+|++...|+++.|...|++++..+|++.+..
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 1 1123355666666666 6777777777777766665 344556666677777777777777777777777776666
Q ss_pred HHHHHHHHHcC----ChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000242 1733 SIYLDQEIRLG----DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1799 (1801)
Q Consensus 1733 ~~y~~le~k~g----d~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~~~ 1799 (1801)
..++.+|...+ ..+.|..+..+++. ..|... ..|.....+.+ .+|......+|.+|+..+..+
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~~d~-~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLE--QTPVDS-EAWLELAQLLE-QTDPWASLDAYGNALDILESK 446 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHh--cccccH-HHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHc
Confidence 66666665443 34566667777666 445555 45655555443 556666688888888777653
No 115
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.08 E-value=2.6e-08 Score=121.38 Aligned_cols=245 Identities=20% Similarity=0.242 Sum_probs=178.2
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000242 1533 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS-MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1611 (1801)
Q Consensus 1533 ~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~-~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~ 1611 (1801)
....+...|||.+..-|-|..+|+.|.+++.. .++.+..|..|+||...+.. ++-.-.+|-.|+.+++...++ ..
T Consensus 94 ~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~--dF~S~~lWdkyie~en~qks~--k~ 169 (577)
T KOG1258|consen 94 NAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL--DFLSDPLWDKYIEFENGQKSW--KR 169 (577)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc--chhccHHHHHHHHHHhccccH--HH
Confidence 36678899999999999999999999999964 46888899999999987765 444447999999999888844 78
Q ss_pred HHHHHHHHHhcCCCH-----HHHHHHHH----------------------------------------------------
Q 000242 1612 VVKVFQRALQYCDPK-----KVHLALLG---------------------------------------------------- 1634 (1801)
Q Consensus 1612 a~~vferAl~~~~~~-----~v~~~l~~---------------------------------------------------- 1634 (1801)
...+|+|.+.+--.. .-|..+++
T Consensus 170 v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~ 249 (577)
T KOG1258|consen 170 VANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTE 249 (577)
T ss_pred HHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhH
Confidence 888888887643110 11222111
Q ss_pred --------------HHHHhCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC
Q 000242 1635 --------------LYERTEQNKLADELLYKMIKKF--------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1691 (1801)
Q Consensus 1635 --------------i~~~~g~~~~A~~~~~~~~k~~--------~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1691 (1801)
+|..+....+.+..|+..+++. +...+.|..|+.|.... .++.+.-+|+|++-.+..
T Consensus 250 ~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~ 329 (577)
T KOG1258|consen 250 EKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL 329 (577)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh
Confidence 1111111222222222222211 13467788899888888 888899999998876644
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHH
Q 000242 1692 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1770 (1801)
Q Consensus 1692 ~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~-P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~ 1770 (1801)
. .++|.+|+.+....|+.+-|...+.++.+.+ |+.+-+-..|+.++...|+++.|+.+++++.+ .+ |.-. .+=.
T Consensus 330 Y--~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~-e~-pg~v-~~~l 404 (577)
T KOG1258|consen 330 Y--DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIES-EY-PGLV-EVVL 404 (577)
T ss_pred h--HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh-hC-Cchh-hhHH
Confidence 4 4889999988888888888888888887764 66677888888888888888889998888887 34 5555 5667
Q ss_pred HHHHHHHHcCCHHHHH
Q 000242 1771 KYLEYEKSVGEEERIE 1786 (1801)
Q Consensus 1771 ~yl~~E~~~G~~e~a~ 1786 (1801)
+|+.+|.+.|+.+.+.
T Consensus 405 ~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 405 RKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhHHHHhcchhhhh
Confidence 7788888888877766
No 116
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=8.7e-09 Score=123.28 Aligned_cols=252 Identities=11% Similarity=0.049 Sum_probs=218.4
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000242 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e 1610 (1801)
..+..+.-..++.++..+|-+.....-+++.+...++..+-..+..+..+..|..+ --|.+..-++...+++ .
T Consensus 257 ~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a-----~sW~aVg~YYl~i~k~--s 329 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA-----LSWFAVGCYYLMIGKY--S 329 (611)
T ss_pred cChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC-----cchhhHHHHHHHhcCc--H
Confidence 45577777888999999999988888888899999999999999999999888655 4799999999999965 9
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHh
Q 000242 1611 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1688 (1801)
Q Consensus 1611 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~ 1688 (1801)
.||+.|-+|....+.. ..|+.++..|.-.+..+.|...|.+|-+.++....-.+-++-=+.++ .++-|.+.|..|+..
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999986 99999999999999999999999999999987766666666667777 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 000242 1689 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE----YPK---RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1761 (1801)
Q Consensus 1689 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~----~P~---~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~ 1761 (1801)
+|... -++...+-+.++.+.+.+|..+|+.++.. .+. ...+|..++..+.+++.++.|...|+++|. +.
T Consensus 410 ~P~Dp--lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~ 485 (611)
T KOG1173|consen 410 APSDP--LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LS 485 (611)
T ss_pred CCCcc--hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cC
Confidence 99984 67777888888999999999999999832 222 345799999999999999999999999999 88
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1762 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1762 pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
|+.. ..+....-.....|+.+.|...|.+|+-
T Consensus 486 ~k~~-~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 486 PKDA-STHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCch-hHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 8777 5666655667778999999999999974
No 117
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=5.6e-09 Score=116.29 Aligned_cols=226 Identities=13% Similarity=0.075 Sum_probs=179.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 000242 1556 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLG 1634 (1801)
Q Consensus 1556 ~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~ 1634 (1801)
.+++.+|+++|.+.+|..-++.+|+..|.-+ -+.-+...+.+.. .++.|..+|..-+...|.+ ++...++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~d------TfllLskvY~rid--QP~~AL~~~~~gld~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPD------TFLLLSKVYQRID--QPERALLVIGEGLDSFPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchh------HHHHHHHHHHHhc--cHHHHHHHHhhhhhcCCchhhhhhhhHH
Confidence 4677888999999999999999998777544 3555556677777 4588999999999888876 78888889
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000242 1635 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713 (1801)
Q Consensus 1635 i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~ 1713 (1801)
+++..+++++|.++|+++++..+.+.++.-..+.-++-. +++-|..+|.|.|+.--.+ ++++.+.+...+-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhh
Confidence 999999999999999999998888887777777666666 8888888888888875444 5788888887777778888
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000242 1714 GRSMFEGILSEYP---KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1790 (1801)
Q Consensus 1714 Ar~lfe~al~~~P---~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~ 1790 (1801)
+..-|+|++...- .-.|+|+.+.......||..-|...|.-|+. ..+.+. ..++...-++.+.|+.+.|+.++.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~-ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHG-EALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchH-HHHHhHHHHHhhcCchHHHHHHHH
Confidence 8888888886543 2467888888888888888888888888887 566666 466777777888888888888887
Q ss_pred HHHH
Q 000242 1791 KAME 1794 (1801)
Q Consensus 1791 rAl~ 1794 (1801)
.|-.
T Consensus 454 ~A~s 457 (478)
T KOG1129|consen 454 AAKS 457 (478)
T ss_pred Hhhh
Confidence 7654
No 118
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=99.07 E-value=5.9e-10 Score=104.38 Aligned_cols=73 Identities=25% Similarity=0.331 Sum_probs=68.7
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC--CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000242 626 HPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698 (1801)
Q Consensus 626 ~~G~~~~G~V~~i~~~G~fV~f~~--~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~ 698 (1801)
+.|+.+.|.|.++.++|+||++.+ ++.||+|.+++++.+..++.+.|++||+|+|+|+++|.+.+++.||+|+
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 479999999999999999999974 6999999999999999999999999999999999999999999999874
No 119
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.07 E-value=5e-10 Score=105.20 Aligned_cols=74 Identities=32% Similarity=0.558 Sum_probs=69.8
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000242 626 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699 (1801)
Q Consensus 626 ~~G~~~~G~V~~i~~~G~fV~f~~-~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~ 699 (1801)
++|+.+.|+|++++++|+||++.+ ++.||+|.+++++.+..++.+.|++||.|+|+|+++|++++++.||+|++
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~ 75 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKAS 75 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEee
Confidence 368999999999999999999985 89999999999998888899999999999999999999999999999875
No 120
>PRK05807 hypothetical protein; Provisional
Probab=99.06 E-value=5.1e-10 Score=115.73 Aligned_cols=74 Identities=31% Similarity=0.643 Sum_probs=69.6
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1331 ~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
.+++|++|.|+|+.+++||+||.| + +..||+|+|++++.++.++...|++||.|+|+|+++|. +++|.||+|+.
T Consensus 2 ~~~vG~vv~G~Vt~i~~~GafV~L-~-~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 2 TLKAGSILEGTVVNITNFGAFVEV-E-GKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQA 75 (136)
T ss_pred CccCCCEEEEEEEEEECCeEEEEE-C-CEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 467999999999999999999999 4 68999999999999999999999999999999999996 79999999984
No 121
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.06 E-value=3.5e-10 Score=103.73 Aligned_cols=68 Identities=29% Similarity=0.423 Sum_probs=63.6
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCc-ccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000242 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-GQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695 (1801)
Q Consensus 628 G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~-~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lS 695 (1801)
|+.+.|+|++++++|+||++.+++.||+|.++++| ....++.+.|++||+|+|+|+++|++++|+.||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDGGIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCCCCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 67899999999999999999999999999999996 567788889999999999999999999999875
No 122
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.06 E-value=1.9e-08 Score=125.84 Aligned_cols=227 Identities=12% Similarity=0.129 Sum_probs=180.7
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc-hhhHH--HHHHHHHH
Q 000242 1523 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE-ENEKL--NIWVAYFN 1599 (1801)
Q Consensus 1523 ~~~e~~~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~e-e~e~l--~lW~a~l~ 1599 (1801)
+..+..+..++.+++...+++++..+|+++.+...++..|.+.+++++|.+++.+..+...... +..++ ..|..++.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4455556677788999999999999999999999999999999999999999999997655422 11212 23444333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHH
Q 000242 1600 LENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1677 (1801)
Q Consensus 1600 le~~~g~~~~e~a~~vferAl~~~~-~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~ 1677 (1801)
...... +.+...+++++.-+..+ ...++..++..+...|+.++|...++++++. +.++.+...|+.. .. ++++
T Consensus 238 ~~~~~~--~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~ 312 (398)
T PRK10747 238 QAMADQ--GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQ 312 (398)
T ss_pred HHHHhc--CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHH
Confidence 322222 23444444444322223 3489999999999999999999999999984 5677777777764 44 8999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1678 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1678 A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
+.+.+++.++..|.+ +.+++.+|+++.+.+++++|+..|+++++..|+..+ +..++.++.+.|+.+.|..+|++++.
T Consensus 313 al~~~e~~lk~~P~~--~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 313 LEKVLRQQIKQHGDT--PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999988 489999999999999999999999999999998655 55789999999999999999999987
No 123
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.05 E-value=1.8e-08 Score=135.94 Aligned_cols=222 Identities=13% Similarity=0.082 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCCHHHHH
Q 000242 1553 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY--CDPKKVHL 1630 (1801)
Q Consensus 1553 ~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~--~~~~~v~~ 1630 (1801)
..|..++..|.+.|++++|+.+|+++... . ...|..++..+.+.| ..++|.++|++..+. .|....|.
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~----~vt~n~li~~y~~~g--~~~eA~~lf~~M~~~g~~pd~~t~~ 329 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEK----T----TVAWNSMLAGYALHG--YSEEALCLYYEMRDSGVSIDQFTFS 329 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCC----C----hhHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34444444455555555555555433210 0 234555555544444 234455555544432 22334444
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000242 1631 ALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708 (1801)
Q Consensus 1631 ~l~~i~~~~g~~~~A~~~~~~~~k~~-~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1708 (1801)
.++..|.+.|++++|.++++.+.+.. +.+..++..++..|.+. ++++|+++|+++.+. ....|..++..+.+.
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-----NLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-----CeeeHHHHHHHHHHc
Confidence 55555555555555555555554432 33444444555555544 555555555544321 123444455555555
Q ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000242 1709 GVADRGRSMFEGILSEYP-KRTDLWSIYLDQEIRLGDVDLIRGLFERAIS-LSLPPKKMKFLFKKYLEYEKSVGEEERIE 1786 (1801)
Q Consensus 1709 g~~e~Ar~lfe~al~~~P-~~~dlw~~y~~le~k~gd~e~ar~lferal~-~~~~pk~~k~lw~~yl~~E~~~G~~e~a~ 1786 (1801)
|+.++|..+|++...... .+...|..++..+.+.|..++|+.+|+.... ....|+. ..|...++...+.|..++|.
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~--~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA--MHYACMIELLGREGLLDEAY 482 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc--cchHhHHHHHHhcCCHHHHH
Confidence 555555555555443311 1223344444444455555555555555443 1223321 13444555555555555555
Q ss_pred HHHHH
Q 000242 1787 YVKQK 1791 (1801)
Q Consensus 1787 ~v~~r 1791 (1801)
+++++
T Consensus 483 ~~~~~ 487 (697)
T PLN03081 483 AMIRR 487 (697)
T ss_pred HHHHH
Confidence 54443
No 124
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.05 E-value=1.2e-08 Score=128.91 Aligned_cols=80 Identities=9% Similarity=0.031 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000242 1711 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1790 (1801)
Q Consensus 1711 ~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~ 1790 (1801)
.++|..+|.++|+.+|++...-+-.+-.+...|+...|+.+|.++.+ ...+.. ..|.........+|.+-.|.++|+
T Consensus 628 ~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE--a~~~~~-dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE--ATSDFE-DVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHH--HHhhCC-ceeeeHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666544333333334444444444444444443 111111 344444444444444444444444
Q ss_pred HHH
Q 000242 1791 KAM 1793 (1801)
Q Consensus 1791 rAl 1793 (1801)
+++
T Consensus 705 ~~l 707 (1018)
T KOG2002|consen 705 NCL 707 (1018)
T ss_pred HHH
Confidence 443
No 125
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.04 E-value=6.6e-10 Score=103.16 Aligned_cols=71 Identities=32% Similarity=0.650 Sum_probs=67.9
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecc
Q 000242 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~ 1406 (1801)
|++|.|+|+++.++|+||+|.+ +++|+||++++++++..++.+.|++||.++++|+++|++++++.||+|.
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~ 71 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGD-GVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKA 71 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCC-CCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEE
Confidence 7899999999999999999986 7999999999999998899999999999999999999999999999986
No 126
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=99.03 E-value=8.8e-10 Score=101.92 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=64.7
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000242 626 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696 (1801)
Q Consensus 626 ~~G~~~~G~V~~i~~~G~fV~f~~-~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSl 696 (1801)
..|+.+.|.|+++++||+||++.+ +..||+|.+++++.++.++.+.|++||+|+|+|+++|.++ |+.||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 379999999999999999999955 3799999999999999999999999999999999999876 999986
No 127
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.03 E-value=8.4e-10 Score=102.05 Aligned_cols=71 Identities=34% Similarity=0.627 Sum_probs=64.0
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcc-cccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~-~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~ls 1403 (1801)
+++|+++.|+|+++.+||+||+|.+ +++||+|++++.+. +..+..+.|++||.|+++|+++|.++++|.|+
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~-~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEE-GVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCC-CCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 5789999999999999999999987 79999999999864 44467788999999999999999999999875
No 128
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.03 E-value=7.4e-10 Score=99.92 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=60.7
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000242 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695 (1801)
Q Consensus 628 G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lS 695 (1801)
|+.+.|.|++++++|+||++.+++.||+|.++++..... .+.|++||.+.|+|+++|++++|+.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLSSFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcCCceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 788999999999999999999999999999999865443 778999999999999999999999886
No 129
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.02 E-value=8.7e-10 Score=99.48 Aligned_cols=66 Identities=27% Similarity=0.516 Sum_probs=60.6
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000242 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~ls 1403 (1801)
|++|.|+|+++.++|+||+|.+ +++|++|.+++++.+.. .+.|++||.|+|+|+.+|++++||.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~-~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLS-SFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcC-CceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999986 79999999999876544 778999999999999999999999886
No 130
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.00 E-value=1.1e-09 Score=101.19 Aligned_cols=71 Identities=27% Similarity=0.407 Sum_probs=64.4
Q ss_pred CCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcc-cccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000242 625 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-QRADLSKTYYVGQSVRSNILDVNSETGRITLS 695 (1801)
Q Consensus 625 ~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~-~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lS 695 (1801)
+++|+.+.|.|++++++|+||++.+++.||+|.++++|. ...++...|++||+|+|+|+++|++++++.|+
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCCCCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 368999999999999999999999999999999999864 44577788999999999999999999999875
No 131
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.00 E-value=1.7e-09 Score=100.44 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=69.0
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000242 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316 (1801)
Q Consensus 1245 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~ 1316 (1801)
|+++.|+|+++.++|+||++.++++|++|++++++.+..++.+.|++||.++|+|+++|++++++.||+|..
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~~ 72 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGDGVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKAK 72 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCCCCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEEc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999863
No 132
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=5.2e-09 Score=125.94 Aligned_cols=241 Identities=14% Similarity=0.079 Sum_probs=182.3
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000242 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e 1610 (1801)
.++.++|.-.||.++..+|.+..+|..++..+.++++-..|...++||++.-|..- .+.++++--+...+ -..
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl-----eaLmaLAVSytNeg--~q~ 370 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL-----EALMALAVSYTNEG--LQN 370 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH-----HHHHHHHHHHhhhh--hHH
Confidence 57799999999999999999999999999999999999999999999998766422 23444433333334 236
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH---------HHhCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHh-CHHHH
Q 000242 1611 AVVKVFQRALQYCDPKKVHLALLGLY---------ERTEQNKLADELLYKMIKKFK--HSCKVWLRRVQRLLKQ-QQEGV 1678 (1801)
Q Consensus 1611 ~a~~vferAl~~~~~~~v~~~l~~i~---------~~~g~~~~A~~~~~~~~k~~~--~~~~~w~~~a~~~~~~-~~~~A 1678 (1801)
.|...+..-+...|.. .|+.-+..- .....+....++|-.|....| .++++...++-++.-. .+++|
T Consensus 371 ~Al~~L~~Wi~~~p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHhCccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 6777777777666432 111111111 111223455667777777776 7889999998877777 99999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 000242 1679 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1758 (1801)
Q Consensus 1679 ~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~ 1758 (1801)
..+|+.||+..|.+. .+|.+++-.+..-.+.++|.+.|.|||+..|.-..+|+.++--++.+|.+.+|...|-+||.
T Consensus 450 iDcf~~AL~v~Pnd~--~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~- 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDY--LLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS- 526 (579)
T ss_pred HHHHHHHHhcCCchH--HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH-
Confidence 999999999998884 89999999888778899999999999999999999999999999999999999999999998
Q ss_pred CCCch-----h----HHHHHHHHHHHHHHcCCHH
Q 000242 1759 SLPPK-----K----MKFLFKKYLEYEKSVGEEE 1783 (1801)
Q Consensus 1759 ~~~pk-----~----~k~lw~~yl~~E~~~G~~e 1783 (1801)
+.++ . ...+|...=......+..+
T Consensus 527 -mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 527 -MQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred -hhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 3222 1 1247876655566666665
No 133
>PLN03077 Protein ECB2; Provisional
Probab=98.99 E-value=6.2e-08 Score=133.99 Aligned_cols=246 Identities=12% Similarity=0.053 Sum_probs=150.7
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000242 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~ 1613 (1801)
..+|...|++++...+-+...|..++..+.+.|.++.+++++..+++.--. .+ ..+..++++++.+.| ..+.|.
T Consensus 471 ~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~-~~---~~~~naLi~~y~k~G--~~~~A~ 544 (857)
T PLN03077 471 CFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG-FD---GFLPNALLDLYVRCG--RMNYAW 544 (857)
T ss_pred HHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC-cc---ceechHHHHHHHHcC--CHHHHH
Confidence 344444555544333334444445555555555555555555555432111 00 123445666666777 557777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC
Q 000242 1614 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1691 (1801)
Q Consensus 1614 ~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~-~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1691 (1801)
.+|++. .++...|..++..|.+.|+.++|.++|++|.... ..+...|..+...+.+. .+++|.++|+++.+..+-
T Consensus 545 ~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 545 NQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 777765 4445677777777777777777777777777642 33445555555666666 777777777777754443
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000242 1692 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771 (1801)
Q Consensus 1692 ~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~ 1771 (1801)
......|..+..++.+.|++++|..++++. ...| +..+|..++..+...++.+.|+...+++++ +.|++. ..|..
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~-~~y~l 696 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSV-GYYIL 696 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCc-chHHH
Confidence 333466777777777777777777777764 2223 356777777777777777777777777776 666665 45666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 000242 1772 YLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1772 yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
+..+....|++++|.++.+...
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHH
Confidence 6666667777777777766554
No 134
>PLN03077 Protein ECB2; Provisional
Probab=98.98 E-value=4.6e-08 Score=135.34 Aligned_cols=227 Identities=15% Similarity=0.094 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CHHHH
Q 000242 1552 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD--PKKVH 1629 (1801)
Q Consensus 1552 ~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~--~~~v~ 1629 (1801)
...|..++..|.+.|++++|.++|+++.+.- ...+ ...+..++......+ ..+.|.++++.+.+... ...+|
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd---~~t~~~ll~a~~~~g--~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPD---EITIASVLSACACLG--DLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCC---ceeHHHHHHHHhccc--hHHHHHHHHHHHHHhCCCcchHHH
Confidence 3455555555555555555555555554321 0001 012333333333334 23444444444443321 12444
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC---------------
Q 000242 1630 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--------------- 1693 (1801)
Q Consensus 1630 ~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~--------------- 1693 (1801)
..+++.|.+.|++++|.++|+++.. .+...|..++..+.+. +.++|..+|++++...+.+.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence 4444444444444444444444432 1233444444444444 44444444444443211110
Q ss_pred ------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000242 1694 ------------------HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1755 (1801)
Q Consensus 1694 ------------------~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lfera 1755 (1801)
...++..+..++.+.|+.+.|+.+|+.. +.+...|+.++..+.+.|+.++|..+|++.
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0122233445566667777777776664 445666777777777777777777777776
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1756 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1756 l~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
......|+.. .|...+....+.|..+++..+|+.+.
T Consensus 581 ~~~g~~Pd~~--T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 581 VESGVNPDEV--TFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHcCCCCCcc--cHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 6655555544 45555555556666777666666665
No 135
>PRK08059 general stress protein 13; Validated
Probab=98.97 E-value=2.1e-09 Score=109.88 Aligned_cols=79 Identities=35% Similarity=0.728 Sum_probs=73.7
Q ss_pred cCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecccc
Q 000242 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1408 (1801)
Q Consensus 1329 ~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~~ 1408 (1801)
+.++++|++|.|+|.++.++|+||+|.+ ++.|++|+|++++.++.++.+.|++||.|+|+|+++|.+++++.||+|...
T Consensus 2 ~~~~k~G~iv~G~V~~i~~~G~fV~i~~-~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~~ 80 (123)
T PRK08059 2 MSQYEVGSVVTGKVTGIQPYGAFVALDE-ETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRATE 80 (123)
T ss_pred cccCCCCCEEEEEEEEEecceEEEEECC-CCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEcc
Confidence 3468999999999999999999999986 799999999999999888888999999999999999999999999999863
No 136
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.97 E-value=2.2e-09 Score=98.71 Aligned_cols=70 Identities=24% Similarity=0.336 Sum_probs=67.1
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000242 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697 (1801)
Q Consensus 628 G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk 697 (1801)
|+.+.|+|.++.++|+||++.++..|++|.+++++.+..+|.+.|++||.++|+|+++|++++++.||++
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGYKSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7889999999999999999998999999999999999999999999999999999999998999999975
No 137
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.97 E-value=2.5e-09 Score=98.30 Aligned_cols=70 Identities=27% Similarity=0.334 Sum_probs=67.5
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000242 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314 (1801)
Q Consensus 1245 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1314 (1801)
|++|.|+|.++.++|+||+++.+.+|++|.+++++.+..+|.+.|++||.++++|+++|++++++.||+|
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGYKSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999998999999999999999999999999999999999999988999999985
No 138
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=98.96 E-value=2.6e-09 Score=100.67 Aligned_cols=71 Identities=34% Similarity=0.601 Sum_probs=65.6
Q ss_pred CcEEEEEEEEEeeceEEEEEeCC--ceeEEeeccccCcccc-cCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1335 GDIVIGQIKRVESYGLFITIENT--NLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~--~v~gl~~~sel~~~~~-~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
|+++.|+|+++.+||+||+|++. +++||+|++++++.+. .++.+.|++||.|+++|+++| ++++.||+|..
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~ 74 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDV 74 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEec
Confidence 78999999999999999999843 6999999999999886 888899999999999999999 89999999874
No 139
>PRK05807 hypothetical protein; Provisional
Probab=98.95 E-value=3.2e-09 Score=109.79 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=70.8
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000242 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317 (1801)
Q Consensus 1241 ~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~ 1317 (1801)
.+++|++|.|+|+.++++|+||.| .+..|+||++++++.|+.++.+.|++||.|+|+|+++|. +++|.||+|...
T Consensus 2 ~~~vG~vv~G~Vt~i~~~GafV~L-~~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~~ 76 (136)
T PRK05807 2 TLKAGSILEGTVVNITNFGAFVEV-EGKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQAM 76 (136)
T ss_pred CccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEecc
Confidence 367899999999999999999999 588999999999999999999999999999999999997 799999999865
No 140
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=3.8e-08 Score=109.82 Aligned_cols=195 Identities=16% Similarity=0.124 Sum_probs=176.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-C
Q 000242 1596 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1674 (1801)
Q Consensus 1596 a~l~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~ 1674 (1801)
++...+.++|- ...|.+.|+.+++..+.-..|+.+...|.+..+.+.|..+|...+..||.+.......++++... +
T Consensus 228 Q~gkCylrLgm--~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGM--PRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcC--hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 57788899994 49999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000242 1675 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1754 (1801)
Q Consensus 1675 ~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lfer 1754 (1801)
.++|.++|+++++..|.+ ++.+.-.|.-++-.+++|-|..+|+|+|+.--.+++++...+-..+-.+++|-+...|+|
T Consensus 306 ~~~a~~lYk~vlk~~~~n--vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPIN--VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcCCcc--ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 999999999999999877 567766777777788999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1755 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1755 al~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
|++.--.|..+.++|-......-..||+..|.++|+-|+.
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 9995444677778998888777888999999999998874
No 141
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=2.3e-07 Score=104.27 Aligned_cols=223 Identities=17% Similarity=0.132 Sum_probs=182.6
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHH
Q 000242 1563 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-----KKVHLALLGLYE 1637 (1801)
Q Consensus 1563 ~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~-----~~v~~~l~~i~~ 1637 (1801)
+-....|+|...|...++.-| +.....+++.+++.+.| ..+.|..+.+-.+..-+- .-.-..++.=|.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~-----~t~e~~ltLGnLfRsRG--EvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDP-----ETFEAHLTLGNLFRSRG--EVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCc-----hhhHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 344678999999999997533 44568999999999999 679999998877755432 156788889999
Q ss_pred HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChH---HHHHHHHHHHHHcCCHHH
Q 000242 1638 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI---KFISQTAILEFKNGVADR 1713 (1801)
Q Consensus 1638 ~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~---~~~~~~a~le~~~g~~e~ 1713 (1801)
..|-++.|..+|..+.....-...+.-.+..+|-.. .+++|...-++..+..+....+ .+|..+|+.+....+.++
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999999999875444566777788888777 9999999999888887765432 577777777778889999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1714 Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
|+.++.+|++.+|++...-+.+++++...|+++.|...++++++ -+|.-...+-.+....+.+.|..++......++.
T Consensus 199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e--Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE--QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 5555554556666667777899888888877776
Q ss_pred H
Q 000242 1794 E 1794 (1801)
Q Consensus 1794 ~ 1794 (1801)
+
T Consensus 277 ~ 277 (389)
T COG2956 277 E 277 (389)
T ss_pred H
Confidence 5
No 142
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.94 E-value=2.8e-09 Score=97.75 Aligned_cols=69 Identities=35% Similarity=0.783 Sum_probs=65.3
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000242 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK 1405 (1801)
|+++.|+|+++.++|+||.+.+ +..|++|++++++.++.++.+.|++||.|+++|+++|. ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGG-GISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECC-CCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 7899999999999999999986 79999999999999888888999999999999999998 899999986
No 143
>PRK08059 general stress protein 13; Validated
Probab=98.94 E-value=4.4e-09 Score=107.48 Aligned_cols=81 Identities=20% Similarity=0.419 Sum_probs=76.1
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000242 1240 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1319 (1801)
Q Consensus 1240 ~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~ 1319 (1801)
.++++|+++.|.|+++.++|+||.+++++.|++|++++++.+..++.+.|++||.|.|+|+++|.+++++.+|++....+
T Consensus 3 ~~~k~G~iv~G~V~~i~~~G~fV~i~~~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~~~~ 82 (123)
T PRK08059 3 SQYEVGSVVTGKVTGIQPYGAFVALDEETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRATEEA 82 (123)
T ss_pred ccCCCCCEEEEEEEEEecceEEEEECCCCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEcccC
Confidence 45889999999999999999999999999999999999999999998999999999999999999999999999988664
Q ss_pred c
Q 000242 1320 T 1320 (1801)
Q Consensus 1320 ~ 1320 (1801)
|
T Consensus 83 ~ 83 (123)
T PRK08059 83 P 83 (123)
T ss_pred c
Confidence 4
No 144
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.94 E-value=2.1e-09 Score=95.25 Aligned_cols=72 Identities=26% Similarity=0.412 Sum_probs=65.8
Q ss_pred CCeEEEEEEEEecCcEEEEEEEcCceeEEEecccccCcccccccccccccCCCeEeeEEEeecCCCeEEEecc
Q 000242 536 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 608 (1801)
Q Consensus 536 G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~i~~vl~~d~~~~~i~ls~K 608 (1801)
|++|+|+|.++++++++|++. ..+++|+||.+||||+..+++.+.+++++||++..+++++...+.+.+|.|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l~-~~~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAIL-PEEIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCLSNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEec-CCCcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEEeccccEEEEecC
Confidence 789999999999999999993 249999999999999999999999999999999888888888888999986
No 145
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.93 E-value=1.8e-07 Score=117.91 Aligned_cols=232 Identities=15% Similarity=0.098 Sum_probs=189.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Q 000242 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALL 1633 (1801)
Q Consensus 1555 W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~ 1633 (1801)
.+..|......|+++.|..++..+++..|... ..|..+...+.+.| +.+++...+--|...+|.. ..|..++
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~-----~ay~tL~~IyEqrG--d~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNP-----IAYYTLGEIYEQRG--DIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccch-----hhHHHHHHHHHHcc--cHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 44556666667999999999999998777533 47999999999999 7899999999999999875 9999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC---hHHHHHHHHHHHHHcC
Q 000242 1634 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK---HIKFISQTAILEFKNG 1709 (1801)
Q Consensus 1634 ~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~---~~~~~~~~a~le~~~g 1709 (1801)
.+..+.|.+..|+-.|.++++..|.+.+....++..+.++ +..+|...|.++++..|... -......+++.+...+
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999 99999999999999999321 1144555566666666
Q ss_pred CHHHHHHHHHHHHH------------------------------------------------------------------
Q 000242 1710 VADRGRSMFEGILS------------------------------------------------------------------ 1723 (1801)
Q Consensus 1710 ~~e~Ar~lfe~al~------------------------------------------------------------------ 1723 (1801)
+-++|...++.++.
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 55666666666521
Q ss_pred ---------------------------h----C--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 000242 1724 ---------------------------E----Y--P-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1769 (1801)
Q Consensus 1724 ---------------------------~----~--P-~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw 1769 (1801)
. + | .+.+++...++.++..|.+..|..+|-.++. .++.+-.++|
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~--~~~~~~~~vw 452 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN--REGYQNAFVW 452 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc--Cccccchhhh
Confidence 0 0 1 1345677777788888999999999999998 4444445899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000242 1770 KKYLEYEKSVGEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1770 ~~yl~~E~~~G~~e~a~~v~~rAl~~ 1795 (1801)
.+...+++..|.++.|...|++++..
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999864
No 146
>PHA02945 interferon resistance protein; Provisional
Probab=98.93 E-value=3.4e-09 Score=96.27 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=67.4
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCC-ceeEEeecccc--CcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSEL--SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~~-~v~gl~~~sel--~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
..+|+++.|+|+. .+||+||.|..= +..|++|+||+ +..++++ .+.+ +||+|.++|+.+|+.++.|.||||.-
T Consensus 9 P~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V 84 (88)
T PHA02945 9 PNVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRM 84 (88)
T ss_pred CCCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEc
Confidence 4689999999999 999999999852 89999999955 9999999 8888 99999999999999999999999974
No 147
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=3.4e-08 Score=119.06 Aligned_cols=230 Identities=18% Similarity=0.126 Sum_probs=188.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHH
Q 000242 1557 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGL 1635 (1801)
Q Consensus 1557 ~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i 1635 (1801)
.-+.-+++.|++.+|.-+||.|++.-|. ....|..+.-..-... ....|...++||++..|.+ .+.++|+-.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~-----haeAW~~LG~~qaENE--~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQ-----HAEAWQKLGITQAENE--NEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChH-----HHHHHHHhhhHhhhcc--chHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 4455678889999999999999987663 4568998887766666 5688999999999999986 899999999
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH----HH-----HHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000242 1636 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ----RL-----LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1705 (1801)
Q Consensus 1636 ~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~----~~-----~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le 1705 (1801)
|...|.-..|..++...+...| +..|+..+. +. ... ......++|-.|...+|....+++...++-++
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 9999999999999999987542 222332221 00 111 35667788888888888766679999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000242 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1785 (1801)
Q Consensus 1706 ~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a 1785 (1801)
+-.|++++|...|+.||+..|.+.-+|+.|+..+..-...+.|...|.||+. +.|.-. ..|....--.+..|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yV-R~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYV-RVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCee-eeehhhhhhhhhhhhHHHH
Confidence 9999999999999999999999999999999999888899999999999999 888766 3444444456778999999
Q ss_pred HHHHHHHHHHHHh
Q 000242 1786 EYVKQKAMEYVES 1798 (1801)
Q Consensus 1786 ~~v~~rAl~~v~~ 1798 (1801)
...|-.|+..-++
T Consensus 518 ~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 518 VKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999987765
No 148
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=98.92 E-value=3e-09 Score=97.19 Aligned_cols=68 Identities=31% Similarity=0.603 Sum_probs=64.1
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000242 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~ls 1403 (1801)
|+++.|+|+++.++|+||++.+ +..|++|.+++++.+..++.+.|++||.++|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~-~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGV-KQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCC-CCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 7899999999999999999986 7999999999999988888889999999999999999999999875
No 149
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.92 E-value=4.2e-09 Score=95.77 Aligned_cols=67 Identities=27% Similarity=0.477 Sum_probs=61.7
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000242 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697 (1801)
Q Consensus 628 G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk 697 (1801)
|+.+.|.|.++.++|+||+| +|+.||+|.+++++.+..++.. .+||.+.|+|+++|.+++++.||.|
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-EGVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 68899999999999999999 8899999999999887777765 4999999999999999999999975
No 150
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.92 E-value=3.8e-09 Score=96.83 Aligned_cols=69 Identities=30% Similarity=0.518 Sum_probs=65.8
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000242 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697 (1801)
Q Consensus 628 G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk 697 (1801)
|+.+.|.|++++++|+||++.+++.||+|.+++++.++.++.+.|++||.++|+|+++|+ ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGGGISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECCCCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 688999999999999999999999999999999998888999999999999999999998 899999985
No 151
>PLN02789 farnesyltranstransferase
Probab=98.91 E-value=3.9e-07 Score=109.15 Aligned_cols=230 Identities=14% Similarity=0.101 Sum_probs=185.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~-e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e 1610 (1801)
+..++|...++++|..+|++..+|......+...+ .+++|...++++++..|.. ..+|.....+...++....+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-----yqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-----YQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-----hHHhHHHHHHHHHcCchhhH
Confidence 34789999999999999999999999999988888 6899999999999876642 35788766666666631136
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--------CHHHHHHH
Q 000242 1611 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--------QQEGVQAV 1681 (1801)
Q Consensus 1611 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~--------~~~~A~~l 1681 (1801)
.+...+++|++..|.+ .+|...+.++...+++++|.+.++++++..+.+..+|...+..+... ..+++.++
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 7789999999999875 99999999999999999999999999999999999999988765432 23577888
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------
Q 000242 1682 VQRALLSLPRHKHIKFISQTAILEFKN----GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-------------- 1743 (1801)
Q Consensus 1682 l~ralk~~p~~~~~~~~~~~a~le~~~----g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~g-------------- 1743 (1801)
..+++...|.+. .+|..+..++... +...+|...+.+++...|++..+..-+++++....
T Consensus 206 ~~~aI~~~P~N~--SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANPRNE--SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCCCCc--CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 889999999986 7898888888763 44567999999999999999998888888886422
Q ss_pred ----ChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000242 1744 ----DVDLIRGLFERAISLSLPPKKMKFLFKK 1771 (1801)
Q Consensus 1744 ----d~e~ar~lferal~~~~~pk~~k~lw~~ 1771 (1801)
..+.|..+++.+ . ...|=+. ..|.-
T Consensus 284 ~~~~~~~~a~~~~~~l-~-~~d~ir~-~yw~~ 312 (320)
T PLN02789 284 EELSDSTLAQAVCSEL-E-VADPMRR-NYWAW 312 (320)
T ss_pred cccccHHHHHHHHHHH-H-hhCcHHH-HHHHH
Confidence 235677888777 3 3666555 36653
No 152
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=2.4e-07 Score=115.51 Aligned_cols=218 Identities=18% Similarity=0.166 Sum_probs=130.2
Q ss_pred HcCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC-----CCHHHHHHHHH
Q 000242 1546 RSSPNSSFVWIKYMAFML---SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-----PPEEAVVKVFQ 1617 (1801)
Q Consensus 1546 ~~~P~s~~~W~~y~~~~~---~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~-----~~~e~a~~vfe 1617 (1801)
...|.++.+|..|+.-.. +..+-..+...|++|+.-.+ .+.+|..|+++...+++ .+.+..+.+|+
T Consensus 141 ~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~------~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ 214 (881)
T KOG0128|consen 141 EIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN------SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFE 214 (881)
T ss_pred HhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc------cchHHHHHHHHHHhccccccccccchhhhHHHH
Confidence 445777777777766553 33456666667777764222 25677777777665543 13466677777
Q ss_pred HHHhcCCC-----HHHHHHHHH---HHHHhCChHHHHHHHHHHHHhcC-CCHHHHHHHH----HHHHHh--CHHHH----
Q 000242 1618 RALQYCDP-----KKVHLALLG---LYERTEQNKLADELLYKMIKKFK-HSCKVWLRRV----QRLLKQ--QQEGV---- 1678 (1801)
Q Consensus 1618 rAl~~~~~-----~~v~~~l~~---i~~~~g~~~~A~~~~~~~~k~~~-~~~~~w~~~a----~~~~~~--~~~~A---- 1678 (1801)
||+..... ..+|..|.. .|..+-..+....+|.+.++..- .....|-.+- .++... +++.|
T Consensus 215 ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l 294 (881)
T KOG0128|consen 215 RALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNL 294 (881)
T ss_pred HHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHH
Confidence 77755443 244544444 34444444455555555554320 0111111111 111111 22222
Q ss_pred ---HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCChHHHHHHHHH
Q 000242 1679 ---QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE-IRLGDVDLIRGLFER 1754 (1801)
Q Consensus 1679 ---~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le-~k~gd~e~ar~lfer 1754 (1801)
+..|++.++..+.. ...|..|..++++.|++-+-..+++|++..++.+.++|+.|..+. ..++-.+++-..+-|
T Consensus 295 ~~~~~~~e~~~q~~~~~--~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~r 372 (881)
T KOG0128|consen 295 AKILFKFERLVQKEPIK--DQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPR 372 (881)
T ss_pred HHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccch
Confidence 33344455555444 378999999999999999999999999999999999999988765 355666677777888
Q ss_pred HHhcCCCchhHHHHHHHHHH
Q 000242 1755 AISLSLPPKKMKFLFKKYLE 1774 (1801)
Q Consensus 1755 al~~~~~pk~~k~lw~~yl~ 1774 (1801)
++. .+|... ++|++|+.
T Consensus 373 a~R--~cp~tg-dL~~rall 389 (881)
T KOG0128|consen 373 AVR--SCPWTG-DLWKRALL 389 (881)
T ss_pred hhc--CCchHH-HHHHHHHH
Confidence 877 555555 68888873
No 153
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.89 E-value=2.3e-07 Score=115.52 Aligned_cols=248 Identities=17% Similarity=0.192 Sum_probs=181.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000242 1549 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL---NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1625 (1801)
Q Consensus 1549 P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l---~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~ 1625 (1801)
|.-......++..|..++++++|...+++|++.+-.+-..+.+ ..-..+..++...++ ...|..+|++|++.-..
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k--~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK--YDEAVNLYEEALTIREE 273 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHH
Confidence 4444555568888999999999999999999863111111111 122235566677774 59999999999976532
Q ss_pred ---------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC-----CCH---HHHHHHHHHHHHh-CHHHHHHHHHHHHH
Q 000242 1626 ---------KKVHLALLGLYERTEQNKLADELLYKMIKKFK-----HSC---KVWLRRVQRLLKQ-QQEGVQAVVQRALL 1687 (1801)
Q Consensus 1626 ---------~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~-----~~~---~~w~~~a~~~~~~-~~~~A~~ll~ralk 1687 (1801)
-.++..|+.+|...|++.+|...+++++..+. ..+ ......+..+... ++++|..+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 17899999999999999999999999998763 223 3344455555555 99999999999988
Q ss_pred hC---CCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC-C----HHHHHHHHHHHHHcCChHHHHHHH
Q 000242 1688 SL---PRHKH---IKFISQTAILEFKNGVADRGRSMFEGILSEY----PK-R----TDLWSIYLDQEIRLGDVDLIRGLF 1752 (1801)
Q Consensus 1688 ~~---p~~~~---~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~----P~-~----~dlw~~y~~le~k~gd~e~ar~lf 1752 (1801)
.. |...| ..++.++|.+++..|++++|+++|+.|++.. -+ + ..+|. ++..+.+.+.+..|-.+|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~-la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ-LAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH-HHHHHHHhcccchHHHHH
Confidence 64 33333 4789999999999999999999999999765 21 2 23454 455557888899899999
Q ss_pred HHHHhc-----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000242 1753 ERAISL-----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800 (1801)
Q Consensus 1753 eral~~-----~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~~~~ 1800 (1801)
+++... ...|.-. ..++.....+...|+++.|..+-++++.+-+...
T Consensus 433 ~~~~~i~~~~g~~~~~~~-~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVT-YTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred HHHHHHHHHhCCCCCchH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 988761 1233333 4566677778899999999999999998876544
No 154
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=98.88 E-value=4.3e-09 Score=96.19 Aligned_cols=68 Identities=31% Similarity=0.440 Sum_probs=64.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000242 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695 (1801)
Q Consensus 628 G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lS 695 (1801)
|+.+.|+|++++++|+||++.++..||+|.+++++.+..++...|++||.++|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGVKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCCCCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 67899999999999999999999999999999998888888889999999999999999999999876
No 155
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.88 E-value=5.3e-07 Score=120.06 Aligned_cols=252 Identities=10% Similarity=0.004 Sum_probs=152.1
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000242 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e 1610 (1801)
.++..+|++.|++++..+|+++.++..++..+.+.++.++|.+.++++.+..|... ....++.+....+ ...
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~------~~l~layL~~~~~--~~~ 186 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ------NYMTLSYLNRATD--RNY 186 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH------HHHHHHHHHHhcc--hHH
Confidence 35677999999999999999999999998999999999999999999987666411 1233333333333 223
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHH-------------------------------------------------------
Q 000242 1611 AVVKVFQRALQYCDPK-KVHLALLG------------------------------------------------------- 1634 (1801)
Q Consensus 1611 ~a~~vferAl~~~~~~-~v~~~l~~------------------------------------------------------- 1634 (1801)
.|.+.|+++++..|.+ +++..+..
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 4777777777766542 22222221
Q ss_pred ---------------------------------------------------------------------HHHHhCChHHH
Q 000242 1635 ---------------------------------------------------------------------LYERTEQNKLA 1645 (1801)
Q Consensus 1635 ---------------------------------------------------------------------i~~~~g~~~~A 1645 (1801)
.|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 23444455555
Q ss_pred HHHHHHHHHhcC----C--CHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC-------------CChHHHHHHHHHHH
Q 000242 1646 DELLYKMIKKFK----H--SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-------------HKHIKFISQTAILE 1705 (1801)
Q Consensus 1646 ~~~~~~~~k~~~----~--~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~-------------~~~~~~~~~~a~le 1705 (1801)
..+|++++...+ . .......+.-.++.+ ++++|.++++++.+..|. ....+.....|+.+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 555555544221 0 111112222223344 666666666666654431 11234555556666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000242 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1785 (1801)
Q Consensus 1706 ~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a 1785 (1801)
.-.|+..+|..+++.++...|.+..+++.+++++...|.+.+|+.+++++.. +.|++. .+-...+......|++..+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~-~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSL-ILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccH-HHHHHHHHHHHhhhhHHHH
Confidence 6677777777777777777777777777777777777777777777777766 555554 2222222333345666666
Q ss_pred HHHHHHHH
Q 000242 1786 EYVKQKAM 1793 (1801)
Q Consensus 1786 ~~v~~rAl 1793 (1801)
+.+.+..+
T Consensus 504 ~~~~~~l~ 511 (822)
T PRK14574 504 ELLTDDVI 511 (822)
T ss_pred HHHHHHHH
Confidence 65554443
No 156
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.85 E-value=1e-06 Score=99.27 Aligned_cols=263 Identities=15% Similarity=0.100 Sum_probs=205.2
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc----hhhHH----HHHHHHHHHHH
Q 000242 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE----ENEKL----NIWVAYFNLEN 1602 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~e----e~e~l----~lW~a~l~le~ 1602 (1801)
-+..--+..++++.|...|+-..+-++-+..++.+|++++|.+-|...|+.-|..+ -++++ ..|...-.+..
T Consensus 85 mGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 85 MGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred hcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566778899999999999999999999999999999999999999998766432 22233 33444333434
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHH
Q 000242 1603 EYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQA 1680 (1801)
Q Consensus 1603 ~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ 1680 (1801)
.+++-+-..|.+.....++..|.. .+|...+.+|...|....|..-+..+-+.-.++.+.++.....++.. +.+.+..
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 443326688999999999999986 99999999999999999999999999998889999999999999999 9999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCC
Q 000242 1681 VVQRALLSLPRHKHIKFISQTAIL------------EFKNGVADRGRSMFEGILSEYPKRT----DLWSIYLDQEIRLGD 1744 (1801)
Q Consensus 1681 ll~ralk~~p~~~~~~~~~~~a~l------------e~~~g~~e~Ar~lfe~al~~~P~~~----dlw~~y~~le~k~gd 1744 (1801)
....+|+.+|.++. .+..|-++ ....+++-.+.+..|..++..|.-+ .........+...++
T Consensus 245 ~iRECLKldpdHK~--Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 245 EIRECLKLDPDHKL--CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHHHHccCcchhh--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 99999999999863 33333222 2246778899999999999999843 345556667778899
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000242 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798 (1801)
Q Consensus 1745 ~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~~ 1798 (1801)
+-+|.....+++. +.|+++. ......+...--..++.|.+=|++|+++-++
T Consensus 323 ~~eAiqqC~evL~--~d~~dv~-~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 323 FGEAIQQCKEVLD--IDPDDVQ-VLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHh--cCchHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 9999999999998 7788774 4444444333334577788888888776543
No 157
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=3.3e-07 Score=114.41 Aligned_cols=268 Identities=17% Similarity=0.261 Sum_probs=182.4
Q ss_pred HHHHHHHHHhcc-CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHhcCCcchhhHHH
Q 000242 1521 EIRAAEERLLEK-DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM-------ADVEKARSIAERALQTINIREENEKLN 1592 (1801)
Q Consensus 1521 ~~~~~e~~~~~~-~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~-------~e~d~Ar~~~eral~~i~~~ee~e~l~ 1592 (1801)
+|..++.-+-.. +.++....|+++| .+-++..+|..|+.|.... ++++..|.+|+|||+...++-. +-..
T Consensus 152 ~Wl~d~~~mt~s~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~ 229 (881)
T KOG0128|consen 152 EWLKDELSMTQSEERKEVEELFEKAL-GDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAA 229 (881)
T ss_pred HHHHHHHhhccCcchhHHHHHHHHHh-cccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHH
Confidence 466666554333 3667777888885 5678999999999998633 5789999999999987665433 3457
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcC-----------------------------------------------C
Q 000242 1593 IWVAYFNLENEYGNP-PEEAVVKVFQRALQYC-----------------------------------------------D 1624 (1801)
Q Consensus 1593 lW~a~l~le~~~g~~-~~e~a~~vferAl~~~-----------------------------------------------~ 1624 (1801)
+|..|..|+..+-.. ..+....+|.+.+... +
T Consensus 230 ~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~ 309 (881)
T KOG0128|consen 230 IWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEP 309 (881)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhH
Confidence 898888887644210 1233444444444322 2
Q ss_pred C-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-C----------------------------
Q 000242 1625 P-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q---------------------------- 1674 (1801)
Q Consensus 1625 ~-~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~---------------------------- 1674 (1801)
. ...|..|.++...+|.+-.....++|++.........|+.|+.++-.. +
T Consensus 310 ~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rall 389 (881)
T KOG0128|consen 310 IKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALL 389 (881)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHH
Confidence 2 266778888888888888888889998888877788888877766443 1
Q ss_pred ---------------------------------------------HHHHHHHHHHHHHhCC------CCChHHHHHHHHH
Q 000242 1675 ---------------------------------------------QEGVQAVVQRALLSLP------RHKHIKFISQTAI 1703 (1801)
Q Consensus 1675 ---------------------------------------------~~~A~~ll~ralk~~p------~~~~~~~~~~~a~ 1703 (1801)
++..++.|++|...+. ......++..+|+
T Consensus 390 AleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~ 469 (881)
T KOG0128|consen 390 ALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQ 469 (881)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 1112222222222110 0111355666677
Q ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000242 1704 LEFK-NGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1781 (1801)
Q Consensus 1704 le~~-~g~~e~Ar~lfe~al~~~P~~~d-lw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~ 1781 (1801)
+|.. .++.+.||.++..++...-.+.. .|..|++++...|+...+|.++.+|+.....|..+..+...|..||..+|+
T Consensus 470 ~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gt 549 (881)
T KOG0128|consen 470 VEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGT 549 (881)
T ss_pred HHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhcccc
Confidence 6664 45778888888877766666666 899999999999999999999999888666666666788888899999999
Q ss_pred HHHHHHHHH
Q 000242 1782 EERIEYVKQ 1790 (1801)
Q Consensus 1782 ~e~a~~v~~ 1790 (1801)
++....+-+
T Consensus 550 l~~~~~~~~ 558 (881)
T KOG0128|consen 550 LESFDLCPE 558 (881)
T ss_pred HHHHhhhHH
Confidence 887654433
No 158
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.85 E-value=7.7e-09 Score=99.27 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=67.6
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCc----ccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE----DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~----~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
+++|++|.|+|+++.++|+||.+++ +++|++|+|++++ .+..+..+.|++||.++|+|++++++ +++.||+|..
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~-~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~ 81 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINS-PYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSL 81 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCC-CeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCcc
Confidence 4799999999999999999999986 8999999999985 44466778899999999999999865 9999999885
Q ss_pred cc
Q 000242 1408 YF 1409 (1801)
Q Consensus 1408 ~~ 1409 (1801)
.+
T Consensus 82 ~~ 83 (86)
T cd05789 82 KY 83 (86)
T ss_pred cc
Confidence 43
No 159
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.84 E-value=1.1e-07 Score=124.26 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000242 1626 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1704 (1801)
Q Consensus 1626 ~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l 1704 (1801)
-..+..++.+..+.|.+++|..++++++...|++..++..++..+.+. ++++|...+++++...|.+ ......+|..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~--~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS--AREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC--HHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999 9999999999999999988 4899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1705 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1705 e~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
+.+.|++++|..+|+++++.+|...+.|..|+..+...|+.+.|...|++|+.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998
No 160
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=4.6e-07 Score=104.43 Aligned_cols=260 Identities=13% Similarity=0.076 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHcC-CCCHHHHHHHHHHHH-hcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHH
Q 000242 1519 EQEIRAAEERLLEKDAPRTPDEFERLVRSS-PNSSFVWIKYMAFML-SMA-DVEKARSIAERALQTINIREENEKLNIWV 1595 (1801)
Q Consensus 1519 e~~~~~~e~~~~~~~~~~a~~~fer~L~~~-P~s~~~W~~y~~~~~-~~~-e~d~Ar~~~eral~~i~~~ee~e~l~lW~ 1595 (1801)
+.++.++-+-+-+++.+.+++.+.-+-..+ ...+.+-.++.+++. +-| ++..|....+.|+..--+.. ....
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~-----~a~~ 494 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA-----AALT 494 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH-----HHhh
Confidence 344555444444566666666554433222 223444445544443 333 67777777777774322211 1111
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q 000242 1596 AYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1673 (1801)
Q Consensus 1596 a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~- 1673 (1801)
.-.|.....| +.++|.+.|+.|+....+- +..+..+--++..|+.++|++.|-++-.....+.++.+.++.+|...
T Consensus 495 nkgn~~f~ng--d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 495 NKGNIAFANG--DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred cCCceeeecC--cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 1222223345 6788888888888655543 66666777778888888888888777766667888888888888777
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 000242 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753 (1801)
Q Consensus 1674 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lfe 1753 (1801)
++..|.++|-++....|.. +.+++++|.++-+.|+..+|..++-...+.+|.+.+...-++.+|+...=.+++...||
T Consensus 573 d~aqaie~~~q~~slip~d--p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLIPND--PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred CHHHHHHHHHHhcccCCCC--HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888888888887776 47888888888888888888888777777888887765555666666656677888888
Q ss_pred HHHhcCCCchhHHHHHHHHHH-HHHHcCCHHHHHHHHHH
Q 000242 1754 RAISLSLPPKKMKFLFKKYLE-YEKSVGEEERIEYVKQK 1791 (1801)
Q Consensus 1754 ral~~~~~pk~~k~lw~~yl~-~E~~~G~~e~a~~v~~r 1791 (1801)
+|.- +.|...+ |+.++. ..++.|++.+|..+|..
T Consensus 651 kaal--iqp~~~k--wqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 651 KAAL--IQPNQSK--WQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred HHHh--cCccHHH--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 8876 6666653 666654 45667888877776654
No 161
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.83 E-value=1.8e-07 Score=122.20 Aligned_cols=158 Identities=13% Similarity=0.056 Sum_probs=118.9
Q ss_pred HHHHHhCChHHHHHHHH---HHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000242 1634 GLYERTEQNKLADELLY---KMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1709 (1801)
Q Consensus 1634 ~i~~~~g~~~~A~~~~~---~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g 1709 (1801)
++..+++....+.+.+- .....|++..+++..+|....+. .+++|..+|+++++..|.+ ..++..||..+.+.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--~~a~~~~a~~L~~~~ 134 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--SEAFILMLRGVKRQQ 134 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHhc
Confidence 34444444444333333 33456777888888888888888 8888888888888888877 478888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000242 1710 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1789 (1801)
Q Consensus 1710 ~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~ 1789 (1801)
++++|+..+++++...|++....+.++..+.+.|++++|..+|++++. ..|+.. ..|..|....++.|+.++|...|
T Consensus 135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~-~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--QHPEFE-NGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcH-HHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888887 455555 57777788788888888888888
Q ss_pred HHHHHHH
Q 000242 1790 QKAMEYV 1796 (1801)
Q Consensus 1790 ~rAl~~v 1796 (1801)
++|++..
T Consensus 212 ~~a~~~~ 218 (694)
T PRK15179 212 QAGLDAI 218 (694)
T ss_pred HHHHHhh
Confidence 8887653
No 162
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.83 E-value=9.8e-07 Score=117.56 Aligned_cols=135 Identities=14% Similarity=0.030 Sum_probs=109.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000242 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e 1610 (1801)
.+..++|...+++++...|.+.......+..+...+++++|.++|+++++..|... .++..++.++...+ ..+
T Consensus 81 ~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~-----~~l~gLa~~y~~~~--q~~ 153 (822)
T PRK14574 81 AGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP-----DLISGMIMTQADAG--RGG 153 (822)
T ss_pred cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHhhcC--CHH
Confidence 36688999999999844455666666668899999999999999999998877643 46666667777778 569
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000242 1611 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1672 (1801)
Q Consensus 1611 ~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~ 1672 (1801)
+|.+.++++....|....+..++.++...++..+|.+.|++++..+|++.+++..|...+.+
T Consensus 154 eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 154 VVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQR 215 (822)
T ss_pred HHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999877777777777778888789999999999999888888777766544
No 163
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=98.83 E-value=6.3e-09 Score=132.19 Aligned_cols=101 Identities=26% Similarity=0.486 Sum_probs=77.4
Q ss_pred EEEeCCCCEEEEEEecCcccccccccccc-cC--CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccC----ccc
Q 000242 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINN-LS--NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS----EDH 1372 (1801)
Q Consensus 1300 l~vd~~~~ri~lSlk~~~~~~~~~~~~~~-~~--~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~----~~~ 1372 (1801)
++++ ++++|.++-............+.. .. .+++|++|.|+|++|.+||+||+|.+ +++||+|+||++ +.+
T Consensus 611 Idi~-d~G~V~I~a~d~~~~~~A~~~I~~i~~~~~~~vG~i~~GkV~~I~dfGaFVel~~-G~eGLvHISeisdls~~~r 688 (719)
T TIGR02696 611 ISIE-DDGTVYIGAADGPSAEAARAMINAIANPTMPEVGERFLGTVVKTTAFGAFVSLLP-GKDGLLHISQIRKLAGGKR 688 (719)
T ss_pred EEEe-cCcEEEEEeCCHHHHHHHHHHHHHhhCcCcCCCCCEEEEEEEEEECceEEEEecC-CceEEEEhhhccccccccC
Confidence 4555 367777766543221100001111 11 57999999999999999999999986 899999999996 468
Q ss_pred ccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000242 1373 VDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403 (1801)
Q Consensus 1373 ~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~ls 1403 (1801)
+.++.+.|++||.|+++|+++| +++||+|+
T Consensus 689 v~~~~dv~kvGd~V~VKVl~ID-~~gKI~L~ 718 (719)
T TIGR02696 689 VENVEDVLSVGQKIQVEIADID-DRGKLSLV 718 (719)
T ss_pred cCCHHHcCCCCCEEEEEEEEEC-CCCCeeec
Confidence 8999999999999999999999 58899886
No 164
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.83 E-value=1.3e-08 Score=92.99 Aligned_cols=68 Identities=40% Similarity=0.756 Sum_probs=63.8
Q ss_pred CCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000242 1334 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1403 (1801)
Q Consensus 1334 ~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~ls 1403 (1801)
+|+++.|+|.++.++|+||+++ ++.|++|.+++++.++.++.+.|++||.|+++|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~--~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG--GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC--CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 5899999999999999999996 6999999999998888888899999999999999999999999875
No 165
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.82 E-value=1.5e-08 Score=92.14 Aligned_cols=67 Identities=25% Similarity=0.514 Sum_probs=61.3
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000242 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK 1405 (1801)
|++|.|+|+++.++|+||++ + ++.|++|.|++++.+.+++.. .+||.++++|+++|+++++|.||.|
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~-g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-E-GVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-C-CEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 78999999999999999999 5 799999999999888777655 3899999999999999999999975
No 166
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=9.2e-08 Score=101.53 Aligned_cols=123 Identities=11% Similarity=-0.033 Sum_probs=108.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC
Q 000242 1613 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1691 (1801)
Q Consensus 1613 ~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1691 (1801)
...|++|++..|.. |..++..+.+.|++++|...|++++...|.+..+|..++..+... ++++|...|++|++..|.
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56789999888775 667888889999999999999999999999999999999999999 999999999999999887
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000242 1692 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1739 (1801)
Q Consensus 1692 ~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le 1739 (1801)
+. ..|..+|..+...|++++|+..|++++...|.+...|...+...
T Consensus 91 ~~--~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 91 HP--EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred Cc--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 74 89999999999999999999999999999999999887766544
No 167
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=98.82 E-value=2.2e-08 Score=94.37 Aligned_cols=72 Identities=25% Similarity=0.423 Sum_probs=66.9
Q ss_pred CCEEEEEEEEEeeceEEEEeC---CCcEEEEEcccCCCccc-CCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcc
Q 000242 1245 NMIVQGYVKNVTSKGCFIMLS---RKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1318 (1801)
Q Consensus 1245 G~~v~G~V~~v~~~G~fV~l~---~~v~g~v~~s~lsd~~~-~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~ 1318 (1801)
|+++.|.|+++.++|+||+++ ++..|++|+++++|.+. .++.+.|++||.|+++|+++| ++++.+|+|...+
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~~~ 76 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDVDQ 76 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEeccc
Confidence 789999999999999999998 46999999999999986 899999999999999999999 8999999998654
No 168
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=8.3e-07 Score=106.32 Aligned_cols=206 Identities=10% Similarity=0.007 Sum_probs=165.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HH
Q 000242 1550 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KV 1628 (1801)
Q Consensus 1550 ~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v 1628 (1801)
+-..+|-.+-+.+...+..++|..++.++++..|.. ..+|.....+....+. ..+.+...++++++.+|.. .+
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~-----ytaW~~R~~iL~~L~~-~l~eeL~~~~~~i~~npknyqa 108 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGN-----YTVWHFRRLCLEALDA-DLEEELDFAEDVAEDNPKNYQI 108 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHCCcchHH
Confidence 334455555555566678899999999999876642 3689877777666663 3588999999999999875 89
Q ss_pred HHHHHHHHHHhCCh--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000242 1629 HLALLGLYERTEQN--KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1705 (1801)
Q Consensus 1629 ~~~l~~i~~~~g~~--~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le 1705 (1801)
|.....++.+.++. +++.+.+++++...|.+..+|...+-.+... ++++|.+.+.++|+..|.+. .+|...+.+.
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~--sAW~~R~~vl 186 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN--SAWNQRYFVI 186 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch--hHHHHHHHHH
Confidence 99999888888874 7789999999999999999999999888888 99999999999999999885 6888888766
Q ss_pred HHc---CC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCchhH
Q 000242 1706 FKN---GV----ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1706 ~~~---g~----~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~----gd~e~ar~lferal~~~~~pk~~ 1765 (1801)
.+. |. .+++..+..+++..+|.+...|..+.-++... +...+|...+++++. ..|+..
T Consensus 187 ~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~ 255 (320)
T PLN02789 187 TRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHV 255 (320)
T ss_pred HhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcH
Confidence 654 22 35788888999999999999999998888773 445678889999887 444433
No 169
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=4.2e-07 Score=105.62 Aligned_cols=188 Identities=11% Similarity=-0.005 Sum_probs=145.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000242 1548 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1626 (1801)
Q Consensus 1548 ~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~- 1626 (1801)
++.....|+..+..++..++++.|...|++++...|... .....|..++..+...+ +.+.|...|+++++..|..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP--YAEQAQLDLAYAYYKSG--DYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCcCCC
Confidence 356778888999999999999999999999988777432 11246777777777888 5589999999999888753
Q ss_pred ---HHHHHHHHHHHHh--------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCCCChH
Q 000242 1627 ---KVHLALLGLYERT--------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1695 (1801)
Q Consensus 1627 ---~v~~~l~~i~~~~--------g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p~~~~~ 1695 (1801)
..|..++.++.+. +++++|.+.|++++..+|++...|..+..... +...+ .
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~------~~~~~------------~ 166 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY------LRNRL------------A 166 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH------HHHHH------------H
Confidence 3577777777665 77889999999999999988777654443211 11111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1696 ~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~---~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
......|.++++.|++++|...|++++..+|++ ..+|...+..+.+.|++++|..+|+.+..
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 223467788899999999999999999998875 46899999999999999999999988776
No 170
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.8e-09 Score=114.63 Aligned_cols=76 Identities=33% Similarity=0.646 Sum_probs=71.6
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeC-CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~-~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
..+|++|-|+|++|.+||+||.|+. .|+.|++|+||++..++++..+.+++||.|-|+|+++|+++|.|.||||.-
T Consensus 9 PeeGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkrV 85 (269)
T COG1093 9 PEEGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKRV 85 (269)
T ss_pred CCCCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhhC
Confidence 3589999999999999999999983 389999999999999999999999999999999999999999999999973
No 171
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=98.81 E-value=1.5e-08 Score=92.57 Aligned_cols=68 Identities=38% Similarity=0.747 Sum_probs=63.6
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEee
Q 000242 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lsl 1404 (1801)
|+++.|+|.++.++|+||+|.+ +..|++|++++++.++.++.+.|++||.|+++|+++|+ .+++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILP-GKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCC-CCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 7899999999999999999986 79999999999999888888899999999999999998 89999874
No 172
>PHA02945 interferon resistance protein; Provisional
Probab=98.80 E-value=1.9e-08 Score=91.49 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCC--CcEEEEEcccC--CCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000242 1243 SPNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1317 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~~G~fV~l~~--~v~g~v~~s~l--sd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~ 1317 (1801)
.+|+++-|+|+. .++|+||.|.. +.+|++|+++. +..|+++ ++.+ +||.+.|+|+.+|+.++.|.||||.-.
T Consensus 10 ~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V~ 85 (88)
T PHA02945 10 NVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_pred CCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEcc
Confidence 589999999999 99999999974 89999999955 9999999 9988 999999999999999999999999743
No 173
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=98.80 E-value=1.5e-08 Score=92.61 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=64.3
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000242 628 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696 (1801)
Q Consensus 628 G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSl 696 (1801)
|+.+.|.|.+++++|+||++.++..||+|.+++++.+..++.+.|++||.|.|+|.++|+ ++++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILPGKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCCCCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 678999999999999999999999999999999998888888999999999999999999 99999984
No 174
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=98.79 E-value=2.5e-08 Score=95.17 Aligned_cols=71 Identities=38% Similarity=0.743 Sum_probs=62.5
Q ss_pred CCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEecCCCeeEE
Q 000242 1334 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKRRISL 1402 (1801)
Q Consensus 1334 ~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~-----------~~~~~~~~Gd~V~~~Vl~id~e~~ri~l 1402 (1801)
+|+++.|+|+++.++|+||+|.+.+++|++|.+++++++.. .....|++||.|+++|.++|.++++|.|
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 48999999999999999999985469999999999876422 3457899999999999999999999999
Q ss_pred ee
Q 000242 1403 GM 1404 (1801)
Q Consensus 1403 sl 1404 (1801)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
No 175
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=1.7e-07 Score=115.62 Aligned_cols=216 Identities=13% Similarity=0.106 Sum_probs=151.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000242 1556 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1635 (1801)
Q Consensus 1556 ~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i 1635 (1801)
..|+..+++.|-...|..+|+|. ..|-..+.++...| ...+|..+..+-++..|....|..++++
T Consensus 402 ~~laell~slGitksAl~I~Erl-------------emw~~vi~CY~~lg--~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL-------------EMWDPVILCYLLLG--QHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH-------------HHHHHHHHHHHHhc--ccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 56777777888777777777654 36888888888888 5578888888888744445777777776
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000242 1636 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1714 (1801)
Q Consensus 1636 ~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~A 1714 (1801)
..+.--+++|.+++...- ..+-..++....++ +++++...|+++++..|-. +..|+.++....+.++...|
T Consensus 467 ~~d~s~yEkawElsn~~s------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYIS------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhh------HHHHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHhhhHHH
Confidence 655444555555543322 22444445555556 7777777777777777766 47777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1715 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1715 r~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
...|-+++...|.+...|+.+...+++.++..+|+..+.+|+. ++-++. .+|..|+..-.+.|.++.|...+.|-+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK--cn~~~w-~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK--CNYQHW-QIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh--cCCCCC-eeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777776 444445 4777777777777777777777777665
Q ss_pred HHH
Q 000242 1795 YVE 1797 (1801)
Q Consensus 1795 ~v~ 1797 (1801)
.-+
T Consensus 616 ~~~ 618 (777)
T KOG1128|consen 616 LRK 618 (777)
T ss_pred hhh
Confidence 433
No 176
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=98.77 E-value=1.1e-08 Score=132.73 Aligned_cols=78 Identities=32% Similarity=0.595 Sum_probs=72.2
Q ss_pred CCCCCCcEEE-EEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecccc
Q 000242 1330 SNLHVGDIVI-GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1408 (1801)
Q Consensus 1330 ~~~~~G~~v~-G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~~ 1408 (1801)
.+.++|++|. |+|++|.+||+||+|.+ +++||+|+|+++++++.++.+.|++||.|+++|+++|. ++||.||+|...
T Consensus 749 ~~~~vG~iy~~g~V~~I~~FGaFVeL~~-g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l~ 826 (891)
T PLN00207 749 MVPTVGDIYRNCEIKSIAPYGAFVEIAP-GREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRALL 826 (891)
T ss_pred cCcCCCcEEECcEEEEEeccEEEEEeCC-CCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEeccc
Confidence 4678999995 69999999999999997 79999999999999999999999999999999999996 899999999864
Q ss_pred c
Q 000242 1409 F 1409 (1801)
Q Consensus 1409 ~ 1409 (1801)
.
T Consensus 827 ~ 827 (891)
T PLN00207 827 P 827 (891)
T ss_pred c
Confidence 3
No 177
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=98.77 E-value=2.4e-08 Score=92.15 Aligned_cols=71 Identities=37% Similarity=0.528 Sum_probs=67.2
Q ss_pred CCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000242 627 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697 (1801)
Q Consensus 627 ~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk 697 (1801)
+|+.+.|.|.+++++|+||++.+++.||+|.+++++.+..++...|++||.++|+|++++++++++.||++
T Consensus 2 ~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 2 VGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 69999999999999999999998999999999999887778888899999999999999999999999975
No 178
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=98.76 E-value=3.2e-08 Score=91.28 Aligned_cols=72 Identities=32% Similarity=0.487 Sum_probs=68.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000242 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1314 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk 1314 (1801)
++|+++.|+|.+++++|+||+++.++.|++|.+++++.+..++.+.|++||.+.|+|++++++++++.+|++
T Consensus 1 ~~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 369999999999999999999999999999999999998888888999999999999999998899999985
No 179
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=98.76 E-value=2.6e-08 Score=95.10 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=65.7
Q ss_pred CCCCCcEEEEEEEEEeec--eEEEEEeCCceeEEeeccccCc---ccccCcccccCCCCEEEEEEEEEecCCCeeEEeec
Q 000242 1331 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSE---DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1405 (1801)
Q Consensus 1331 ~~~~G~~v~G~V~~v~~~--G~fV~l~~~~v~gl~~~sel~~---~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK 1405 (1801)
.+++|++|.|+|+++.++ |+||+|++ +.+||+|+||+++ .++.++.+.+++||.|.++|++.....+...|+.+
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~-g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~ 82 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGL-GKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTN 82 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCC-CCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEE
Confidence 568999999999999997 99999986 8999999999998 56778889999999999999998776666666654
Q ss_pred c
Q 000242 1406 S 1406 (1801)
Q Consensus 1406 ~ 1406 (1801)
-
T Consensus 83 ~ 83 (88)
T cd04453 83 I 83 (88)
T ss_pred E
Confidence 3
No 180
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=7.5e-08 Score=118.59 Aligned_cols=199 Identities=13% Similarity=0.170 Sum_probs=166.6
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000242 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~ 1613 (1801)
.-+|...|||+ ..|-..+.+|...|...+|..+..+-++.-|. . .+|..+..+..+ -
T Consensus 414 tksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d-~-----~lyc~LGDv~~d---------~ 470 (777)
T KOG1128|consen 414 TKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD-P-----RLYCLLGDVLHD---------P 470 (777)
T ss_pred HHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc-c-----hhHHHhhhhccC---------h
Confidence 44566667765 78999999999999999999999888873332 2 355555555332 2
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCC
Q 000242 1614 KVFQRALQYCDPK--KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1690 (1801)
Q Consensus 1614 ~vferAl~~~~~~--~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1690 (1801)
..|++|..+.+.. .....++....+.+++++|...|++.++.+|-....|+.++-..++. +++.|.+.|.+++...|
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 3456666555443 44566666667789999999999999999999999999999999999 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1691 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1691 ~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
.+. ..|.+++..+.+.++..+|+..+.+|++++-++..+|.+|+....+.|..++|...|.|.+.
T Consensus 551 d~~--eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 551 DNA--EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred Cch--hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 884 89999999999999999999999999999988999999999999999999999999999987
No 181
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.75 E-value=2.7e-08 Score=90.90 Aligned_cols=68 Identities=29% Similarity=0.405 Sum_probs=63.8
Q ss_pred CCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000242 627 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695 (1801)
Q Consensus 627 ~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lS 695 (1801)
+|+.+.|.|.+++++|+||++. ++.|++|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG-GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC-CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 4889999999999999999995 7999999999998888889999999999999999999999999886
No 182
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=98.74 E-value=1.3e-08 Score=127.72 Aligned_cols=85 Identities=32% Similarity=0.602 Sum_probs=80.2
Q ss_pred ccccccccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000242 1234 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313 (1801)
Q Consensus 1234 ~~~~~~~~l~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSl 1313 (1801)
.....+.+|++|+++.|.|++++++|+||+||-+.+|+||+|.+++.|+.+|.+.+++|+.|+++|+++|...+||.||+
T Consensus 648 ~~v~~i~dLk~Gm~leg~Vrnv~~fgafVdIgv~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Lsm 727 (780)
T COG2183 648 EGVESITDLKPGMILEGTVRNVVDFGAFVDIGVHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALSM 727 (780)
T ss_pred hhhhhHhhccCCCEEEEEEEEeeeccceEEeccccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeEe
Confidence 34566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcc
Q 000242 1314 KTSDS 1318 (1801)
Q Consensus 1314 k~~~~ 1318 (1801)
|....
T Consensus 728 r~~~~ 732 (780)
T COG2183 728 RLDEE 732 (780)
T ss_pred eccCC
Confidence 98665
No 183
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=98.74 E-value=2.5e-08 Score=114.50 Aligned_cols=76 Identities=33% Similarity=0.627 Sum_probs=71.2
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCC-ceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~~-~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
.++|++|.|+|+++.++|+||+|.+. ++.|++|+|++++.++.++.+.|++||.|.|+|+++|+++++|.||+|..
T Consensus 6 P~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~v 82 (262)
T PRK03987 6 PEEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKRV 82 (262)
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEec
Confidence 46899999999999999999999752 79999999999999999999999999999999999999999999999873
No 184
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=7.8e-07 Score=110.28 Aligned_cols=187 Identities=11% Similarity=-0.031 Sum_probs=93.8
Q ss_pred CCCCcHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHH---HHHHHHHHcCC
Q 000242 1533 DAPRTPDEFERLVRSSPNS---SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV---AYFNLENEYGN 1606 (1801)
Q Consensus 1533 ~~~~a~~~fer~L~~~P~s---~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~---a~l~le~~~g~ 1606 (1801)
+.+++...|.+.....|.+ ...+.-.+..+...+++++|.+.++++++..|... ..|. .+..+....+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-----~a~~~~~~~~~~~~~~~- 94 (355)
T cd05804 21 ERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-----LALKLHLGAFGLGDFSG- 94 (355)
T ss_pred CcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----HHHHHhHHHHHhccccc-
Confidence 3444455555555544432 33444445555566666666666666665555322 1222 1111111122
Q ss_pred CCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHH
Q 000242 1607 PPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1684 (1801)
Q Consensus 1607 ~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~r 1684 (1801)
....+.+.++.+....+.. ..+..++.++...|++++|...|++++...|++..+|..++..+.+. ++++|...|++
T Consensus 95 -~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 95 -MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred -CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 1233333333311222221 23334455566666666666666666666666666666666666666 66666666666
Q ss_pred HHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000242 1685 ALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1726 (1801)
Q Consensus 1685 alk~~p~~~--~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P 1726 (1801)
++...|... ....|..+|.++...|++++|..+|++++...|
T Consensus 174 ~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 174 WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 666554321 123455566666666666666666666654444
No 185
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.73 E-value=5.9e-07 Score=112.01 Aligned_cols=225 Identities=15% Similarity=0.108 Sum_probs=175.8
Q ss_pred ccCCCCcHHHHHHHHHc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--Ccchhh-HHHHHHHHHH
Q 000242 1531 EKDAPRTPDEFERLVRS--------SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN--IREENE-KLNIWVAYFN 1599 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~--------~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~--~~ee~e-~l~lW~a~l~ 1599 (1801)
.++.+.|...|++++.. +|.-...-..++.+|+.++++++|..+|++|+...- +.++.+ .......+..
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45688899999999977 666666667799999999999999999999996322 111111 2255566666
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCC------H---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC--------CCHHH
Q 000242 1600 LENEYGNPPEEAVVKVFQRALQYCDP------K---KVHLALLGLYERTEQNKLADELLYKMIKKFK--------HSCKV 1662 (1801)
Q Consensus 1600 le~~~g~~~~e~a~~vferAl~~~~~------~---~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~--------~~~~~ 1662 (1801)
++...| ..++|+..++||+.+... . ..+..++.++...+++++|..+|+++++.+. .-.++
T Consensus 292 ly~~~G--Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 292 LYYKQG--KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred HHhccC--ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 677778 559999999999976532 1 6677777889999999999999999998763 34678
Q ss_pred HHHHHHHHHHh-CHHHHHHHHHHHHHhCCC---CCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Q 000242 1663 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPR---HKH---IKFISQTAILEFKNGVADRGRSMFEGILSE-------YPKR 1728 (1801)
Q Consensus 1663 w~~~a~~~~~~-~~~~A~~ll~ralk~~p~---~~~---~~~~~~~a~le~~~g~~e~Ar~lfe~al~~-------~P~~ 1728 (1801)
+.+++..+..+ ++++|+++|+.|++.... ..+ -..+...|..+.+.+.+.+|-.+|+++... +|.-
T Consensus 370 ~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~ 449 (508)
T KOG1840|consen 370 YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCch
Confidence 89999999999 999999999999987622 111 245566677778888988888888888654 3445
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1729 TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1729 ~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
...+..++.+|.++|+++.|.++.++++.
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 56788889999999999999999999986
No 186
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=98.73 E-value=1.4e-08 Score=127.45 Aligned_cols=79 Identities=33% Similarity=0.653 Sum_probs=75.5
Q ss_pred ccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1328 ~~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
.+.+|++|+++.|+|+++.+||+||.|+ ...+||+|+|++++.++.++.+.+++||.|+++|+++|..++||.|||+..
T Consensus 652 ~i~dLk~Gm~leg~Vrnv~~fgafVdIg-v~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Lsmr~~ 730 (780)
T COG2183 652 SITDLKPGMILEGTVRNVVDFGAFVDIG-VHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALSMRLD 730 (780)
T ss_pred hHhhccCCCEEEEEEEEeeeccceEEec-cccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeEeecc
Confidence 4679999999999999999999999998 489999999999999999999999999999999999999999999999874
No 187
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=3.7e-07 Score=102.29 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH-HHcCC--HHHHHHH
Q 000242 1642 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE-FKNGV--ADRGRSM 1717 (1801)
Q Consensus 1642 ~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le-~~~g~--~e~Ar~l 1717 (1801)
.+++...|+++++..|++...|..++..+... ++++|...|++|++..|.+ ..++..+|..+ +..|+ .++|+.+
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~--~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN--AELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34444455555555555555555555555555 5555555555555555544 24555555532 34443 3555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1718 fe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
|+++++.+|++...|+.++..+++.|++++|...|++++.
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555554
No 188
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.72 E-value=2.5e-06 Score=106.13 Aligned_cols=250 Identities=17% Similarity=0.149 Sum_probs=192.5
Q ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000242 1537 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1616 (1801)
Q Consensus 1537 a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vf 1616 (1801)
+...+|+++..+|+|+.+-+.++-.|..+++++.|.....++++..+... ...|.-++-+...++ +...|..+.
T Consensus 463 slqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~----~~~whLLALvlSa~k--r~~~Al~vv 536 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS----AKAWHLLALVLSAQK--RLKEALDVV 536 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHhhhh--hhHHHHHHH
Confidence 45678899999999999999999999999999999999999997645322 467888777777777 457788888
Q ss_pred HHHHhcCCCH------HH---------------HHHHHHHHH-----------------------HhCChHHHHHHHHHH
Q 000242 1617 QRALQYCDPK------KV---------------HLALLGLYE-----------------------RTEQNKLADELLYKM 1652 (1801)
Q Consensus 1617 erAl~~~~~~------~v---------------~~~l~~i~~-----------------------~~g~~~~A~~~~~~~ 1652 (1801)
.-|+...+.+ ++ ..+++.+++ ...+..+|...+.++
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 8888766542 11 111111111 111222333333332
Q ss_pred HHhc-------------C-------------CCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000242 1653 IKKF-------------K-------------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1705 (1801)
Q Consensus 1653 ~k~~-------------~-------------~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le 1705 (1801)
.+.- | ...++|+..+..+.+. ..++|+.++..|-+.+|.. ...|...|+.+
T Consensus 617 s~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~~ 694 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLLL 694 (799)
T ss_pred HHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHHH
Confidence 2110 1 1256788999988888 9999999999999999877 37899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH--HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000242 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI--RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1783 (1801)
Q Consensus 1706 ~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~a--r~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e 1783 (1801)
...|..++|...|-.++..+|.++..-...+.++.+.|+..-| |.++..|++ ..|.+. ..|.......++.|+.+
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~-eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNH-EAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCH-HHHHHHHHHHHHccchH
Confidence 9999999999999999999999999999999999999976554 459999998 888888 69999899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000242 1784 RIEYVKQKAMEYVE 1797 (1801)
Q Consensus 1784 ~a~~v~~rAl~~v~ 1797 (1801)
.|-.+|+-|++.-.
T Consensus 772 ~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 772 QAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999998643
No 189
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=98.72 E-value=5.8e-08 Score=90.74 Aligned_cols=67 Identities=30% Similarity=0.585 Sum_probs=61.0
Q ss_pred ccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEee
Q 000242 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404 (1801)
Q Consensus 1328 ~~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lsl 1404 (1801)
.+.++++|+++.|+|++++++|+||++.+ ++.||+|.|++. +.|+.||.++++|.++ .+++||.+++
T Consensus 10 ~~~~~~~G~~~~g~V~~i~~~G~fV~l~~-~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 10 TMEDLEVGKLYKGKVNGVAKYGVFVDLND-HVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred chhhCCCCCEEEEEEEeEecceEEEEECC-CcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 46689999999999999999999999987 799999999863 4589999999999999 7999999875
No 190
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=1e-06 Score=102.37 Aligned_cols=164 Identities=11% Similarity=0.039 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000242 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC---KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1701 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~---~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~-~~~~~~ 1701 (1801)
..++.++..+.+.+++++|...|++++..+|.++ .+|+.++..+... ++++|...|+++++..|.+.+. ..|...
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 6777777778888888888888888888777654 5777888888877 8888888888888888766432 246666
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHH
Q 000242 1702 AILEFKN--------GVADRGRSMFEGILSEYPKRTDLW-----------------SIYLDQEIRLGDVDLIRGLFERAI 1756 (1801)
Q Consensus 1702 a~le~~~--------g~~e~Ar~lfe~al~~~P~~~dlw-----------------~~y~~le~k~gd~e~ar~lferal 1756 (1801)
+..+++. |+++.|...|++++..+|++...| ...++++++.|++++|...|++++
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6666654 677888888888888888876544 234677888999999999999999
Q ss_pred hcCCCch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1757 SLSLPPK---KMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1757 ~~~~~pk---~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
. ..|. .. ..|........+.|+++++..+++...
T Consensus 194 ~--~~p~~~~~~-~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 194 E--NYPDTPATE-EALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred H--HCCCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 3332 33 567777888888999999988776543
No 191
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.71 E-value=3.9e-08 Score=94.37 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=66.9
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCc----ccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000242 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD----GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700 (1801)
Q Consensus 626 ~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~----~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~ 700 (1801)
++|+.+.|.|++++++|+||++.+++.|++|.+++++ ....++.+.|++||.+.|+|+++|++ +++.||++...
T Consensus 5 ~~GdiV~g~V~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~~ 82 (86)
T cd05789 5 EVGDVVIGRVTEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSLK 82 (86)
T ss_pred CCCCEEEEEEEEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCccc
Confidence 5899999999999999999999999999999999985 44566777899999999999999876 99999998753
No 192
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.70 E-value=2.2e-07 Score=104.00 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHh-C--HHHHHHHH
Q 000242 1608 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL-LKQ-Q--QEGVQAVV 1682 (1801)
Q Consensus 1608 ~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~-~~~-~--~~~A~~ll 1682 (1801)
+.+.+...++++++.+|.. ..|..++.+|...|++++|...|+++++..|++..+|..|+..+ ... + .++|+++|
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4688889999999999875 99999999999999999999999999999999999999999975 454 4 69999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000242 1683 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1730 (1801)
Q Consensus 1683 ~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~d 1730 (1801)
+++++..|.+ ..++..+|..+++.|++++|...|+++++..|.+.+
T Consensus 134 ~~al~~dP~~--~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 134 DKALALDANE--VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHhCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999999987 589999999999999999999999999999988643
No 193
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.69 E-value=2.8e-06 Score=95.85 Aligned_cols=218 Identities=12% Similarity=0.047 Sum_probs=180.0
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000242 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e 1610 (1801)
.+...+|...|..++..+|++..+.++-+..|+..|.-..|..-+.|.|+.-|. + .-..++..++.+..| ..+
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD---F--~~ARiQRg~vllK~G--ele 123 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD---F--MAARIQRGVVLLKQG--ELE 123 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc---H--HHHHHHhchhhhhcc--cHH
Confidence 344778889999999999999999999999999999999999999999987663 1 245677778888999 669
Q ss_pred HHHHHHHHHHhcCCCH----HHHHHHHH------------HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q 000242 1611 AVVKVFQRALQYCDPK----KVHLALLG------------LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1673 (1801)
Q Consensus 1611 ~a~~vferAl~~~~~~----~v~~~l~~------------i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~- 1673 (1801)
.|..-|...++..|++ +.+..++. -+.-+|+...|.+....++...|....++...+.++...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 9999999999999853 22222222 344578999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------HHH
Q 000242 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ------------EIR 1741 (1801)
Q Consensus 1674 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~l------------e~k 1741 (1801)
.+..|..-++.+-+.-..+ .+.++..++++++.|+.+.+....+.+|+.+|+...-+-.|-.+ .+.
T Consensus 204 e~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDN--TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred cHHHHHHHHHHHHhccccc--hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998876666 48999999999999999999999999999999875433333222 234
Q ss_pred cCChHHHHHHHHHHHh
Q 000242 1742 LGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1742 ~gd~e~ar~lferal~ 1757 (1801)
.+++..+.+-.|.++.
T Consensus 282 ~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLK 297 (504)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 5677778888888887
No 194
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=3.4e-06 Score=92.44 Aligned_cols=192 Identities=15% Similarity=0.167 Sum_probs=130.8
Q ss_pred CCCcHHHHHHHHHcCCC---CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC
Q 000242 1534 APRTPDEFERLVRSSPN---SSFVWIKYMAFM---LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1607 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~---s~~~W~~y~~~~---~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~ 1607 (1801)
.++-...++..+...+. -.+.|.-|-... +..++.+-|...+.+..+.+|.+. | +-.-++-+....+++
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~---R--V~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK---R--VGKLKAMLLEATGNY 102 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh---h--HHHHHHHHHHHhhch
Confidence 44555556655544332 245665554443 455777777777777777776544 2 222333334455633
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHH
Q 000242 1608 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1685 (1801)
Q Consensus 1608 ~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ra 1685 (1801)
+.|.++|++.++..|.+ -+|-+-+.+....|+.-+|.+....-+++|+.+.++|..++.+|+.. ++++|.-+|+.+
T Consensus 103 --~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 --KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred --hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77788888888777765 56666777777778877888888888888888888888888888877 888888888888
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 000242 1686 LLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKRTDLWSI 1734 (1801)
Q Consensus 1686 lk~~p~~~~~~~~~~~a~le~~~g---~~e~Ar~lfe~al~~~P~~~dlw~~ 1734 (1801)
+-..|.+. -.+.+||.+++..| +.+-||++|+++++.+|++...|+-
T Consensus 181 ll~~P~n~--l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 181 LLIQPFNP--LYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHcCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 77777763 67777777777665 4667888888888888876666654
No 195
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3e-06 Score=97.88 Aligned_cols=230 Identities=15% Similarity=0.115 Sum_probs=177.0
Q ss_pred HhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc--------------hhh-----
Q 000242 1529 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--------------ENE----- 1589 (1801)
Q Consensus 1529 ~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~e--------------e~e----- 1589 (1801)
...++..+|...|++....+|.+....-.|+-.+.+.|++++...+-.+.+....+.. +++
T Consensus 243 ~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 243 YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3467788899999999888998888888888777777776665555555543221110 000
Q ss_pred ----------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Q 000242 1590 ----------KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658 (1801)
Q Consensus 1590 ----------~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~ 1658 (1801)
....++.-.++..+.+ ..+.|.-.|+.|....|.+ ..|..+...|...+++.+|.-+-..+.+.+++
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~--R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALE--RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhcc--chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence 0123444445666667 4478888888888888775 88888888999999999998888888888888
Q ss_pred CHHHHHHHH-HHHHHh--CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000242 1659 SCKVWLRRV-QRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1735 (1801)
Q Consensus 1659 ~~~~w~~~a-~~~~~~--~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y 1735 (1801)
+.+.....+ ..++.. .-++|..+++++|+..|.. ..+....|.++...|..+.+..++|+.|..+|+. .+...+
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~L 477 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHL 477 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc--HHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHH
Confidence 888888885 555555 6788999999999998887 5788888999888899999999999999999875 678888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000242 1736 LDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1736 ~~le~k~gd~e~ar~lferal~~~~~pk~~ 1765 (1801)
+++......++.|.+.|..|++ +.|++-
T Consensus 478 gd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 9999999999999999999998 666655
No 196
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=2.9e-06 Score=93.00 Aligned_cols=155 Identities=14% Similarity=0.140 Sum_probs=91.8
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000242 1636 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1714 (1801)
Q Consensus 1636 ~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~A 1714 (1801)
....++.+.|...++++-.+||.+..+-..+|-++... .+++|.++|++.|.-+|.+. -++.+-.-+...+|..-.|
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~--v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT--VIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh--HHHHHHHHHHHHcCCcHHH
Confidence 34456666666666666666666666666666655555 66666666666666666553 3344444444455555566
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 000242 1715 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG---EEERIEYVKQK 1791 (1801)
Q Consensus 1715 r~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G---~~e~a~~v~~r 1791 (1801)
...+...+..+|.+.++|-.++++|+..|++++|--++|.++- ..|-+. ..|.+|.+..--.| +.+.++..|+|
T Consensus 140 Ik~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~-l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 140 IKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNP-LYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666665 455555 46666665533332 45556666666
Q ss_pred HHHH
Q 000242 1792 AMEY 1795 (1801)
Q Consensus 1792 Al~~ 1795 (1801)
|++.
T Consensus 217 alkl 220 (289)
T KOG3060|consen 217 ALKL 220 (289)
T ss_pred HHHh
Confidence 6554
No 197
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=98.68 E-value=3.7e-08 Score=127.98 Aligned_cols=82 Identities=16% Similarity=0.313 Sum_probs=76.8
Q ss_pred cCCCCCEEE-EEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000242 1241 DLSPNMIVQ-GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1319 (1801)
Q Consensus 1241 ~l~~G~~v~-G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~~~~ 1319 (1801)
+.++|+++. |+|++|.++|+||+|.++++|+||+|+|+|.++.++.+.|++||.|+|+|+++|+ .+||.||+|....+
T Consensus 750 ~~~vG~iy~~g~V~~I~~FGaFVeL~~g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l~~~ 828 (891)
T PLN00207 750 VPTVGDIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRALLPE 828 (891)
T ss_pred CcCCCcEEECcEEEEEeccEEEEEeCCCCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEeccccC
Confidence 467999996 6999999999999999999999999999999999999999999999999999997 89999999999888
Q ss_pred cccc
Q 000242 1320 TASQ 1323 (1801)
Q Consensus 1320 ~~~~ 1323 (1801)
||..
T Consensus 829 Pw~~ 832 (891)
T PLN00207 829 ANSE 832 (891)
T ss_pred chhh
Confidence 8754
No 198
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=7.5e-06 Score=101.50 Aligned_cols=203 Identities=13% Similarity=0.041 Sum_probs=95.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000242 1548 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1626 (1801)
Q Consensus 1548 ~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~- 1626 (1801)
+|++...|..++.++...++.+.|...|.++.+..+...+ ....+.-........+ +.+.|.+.++++++..|..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT--ERERAHVEALSAWIAG--DLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcH
Confidence 4555555555555555555555555555555544442211 1112222223333444 3455555555555555543
Q ss_pred HHHH---HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000242 1627 KVHL---ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1702 (1801)
Q Consensus 1627 ~v~~---~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a 1702 (1801)
..|. .+.......+....+...+......++.....+..++..+... ++++|...|+++++..|.+. .++..++
T Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~--~~~~~la 155 (355)
T cd05804 78 LALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA--WAVHAVA 155 (355)
T ss_pred HHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc--HHHHHHH
Confidence 2222 1111112233333333333332222333333444444455555 55555555555555555542 4455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000242 1703 ILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAI 1756 (1801)
Q Consensus 1703 ~le~~~g~~e~Ar~lfe~al~~~P~~----~dlw~~y~~le~k~gd~e~ar~lferal 1756 (1801)
.+++..|++++|..+|++++...|.. .+.|..++.++...|++++|+.+|++++
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 55555555555555555555554422 1234455555555555555555555554
No 199
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.66 E-value=8.1e-08 Score=91.21 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=69.5
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~~~ 1409 (1801)
.++|++|.|+|.++.+.|++|.+.. ..+|++|.++++..+.+++.+.|++||.+.|+|+++|.+ +++.||++...+
T Consensus 4 p~~GdiV~G~V~~v~~~~~~V~i~~-~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~~~ 79 (82)
T cd04454 4 PDVGDIVIGIVTEVNSRFWKVDILS-RGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADNEL 79 (82)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEeCC-CceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCCCC
Confidence 3789999999999999999999975 899999999999888888999999999999999999976 899999987543
No 200
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.4e-06 Score=98.67 Aligned_cols=200 Identities=10% Similarity=0.032 Sum_probs=165.2
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000242 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~ 1613 (1801)
...|...-++.+..+|++...++--++.+++.++.++|.-.|+.|...-|. ++..+..++..++.++ ...+|.
T Consensus 316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-----rL~~Y~GL~hsYLA~~--~~kEA~ 388 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-----RLEIYRGLFHSYLAQK--RFKEAN 388 (564)
T ss_pred HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-----hHHHHHHHHHHHHhhc--hHHHHH
Confidence 455555666777889999999999999999999999999999999977776 4568899999999999 568888
Q ss_pred HHHHHHHhcCCCH-HHHHHHH-H-HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhC
Q 000242 1614 KVFQRALQYCDPK-KVHLALL-G-LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1689 (1801)
Q Consensus 1614 ~vferAl~~~~~~-~v~~~l~-~-i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~ 1689 (1801)
.....+++..+.. .....++ . .+...--.++|...|+++++..|....+-...|..+... ....+..+++++|..+
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 8888888877764 2222221 1 333445578999999999999999999999999998888 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000242 1690 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1743 (1801)
Q Consensus 1690 p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~g 1743 (1801)
|.. .+...+|++....+.+.+|.+.|..||+.+|++.....-+-.+|-...
T Consensus 469 ~D~---~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 469 PDV---NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred ccc---HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 887 789999999999999999999999999999998766555544444333
No 201
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=4.3e-08 Score=107.33 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=71.4
Q ss_pred CCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000242 627 PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701 (1801)
Q Consensus 627 ~G~~~~G~V~~i~~~G~fV~f~--~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~ 701 (1801)
.|+.+.|+|.+|.+||+||.+. +|+.||+|.||++...+.++.+++++||.|.|+|++||+.++-+-||||....
T Consensus 11 eGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkrV~~ 87 (269)
T COG1093 11 EGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKRVTE 87 (269)
T ss_pred CCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhhCCH
Confidence 6999999999999999999986 69999999999999999999999999999999999999999999999997654
No 202
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.65 E-value=7e-08 Score=88.53 Aligned_cols=63 Identities=27% Similarity=0.468 Sum_probs=57.7
Q ss_pred CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCccc--ccCcccccCCCCEEEEEEEEEecCCC
Q 000242 1335 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKR 1398 (1801)
Q Consensus 1335 G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~--~~~~~~~~~~Gd~V~~~Vl~id~e~~ 1398 (1801)
|++|.|+|+++.++|+||+|.+ +++|++|++++++.+ ..++.+.|++||.|+|+|+++|.++.
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~-~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~~ 65 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLAD-NVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAKT 65 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCC-CcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCccc
Confidence 7899999999999999999986 899999999999884 77888999999999999999996543
No 203
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=98.64 E-value=6.2e-08 Score=123.37 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=66.2
Q ss_pred cCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccC----cccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000242 624 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV----DGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695 (1801)
Q Consensus 624 ~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s----~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lS 695 (1801)
+.++|+++.|.|++|++||+||++.+|+.||+|+|+++ +.++.++++.|++||.|+|+|+++|+ ++|+.|+
T Consensus 644 ~~~vG~i~~GkV~~I~dfGaFVel~~G~eGLvHISeisdls~~~rv~~~~dv~kvGd~V~VKVl~ID~-~gKI~L~ 718 (719)
T TIGR02696 644 MPEVGERFLGTVVKTTAFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLSVGQKIQVEIADIDD-RGKLSLV 718 (719)
T ss_pred cCCCCCEEEEEEEEEECceEEEEecCCceEEEEhhhccccccccCcCCHHHcCCCCCEEEEEEEEECC-CCCeeec
Confidence 46899999999999999999999999999999999995 47889999999999999999999995 7899886
No 204
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=98.64 E-value=1.8e-07 Score=103.51 Aligned_cols=96 Identities=20% Similarity=0.415 Sum_probs=78.9
Q ss_pred EEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEEEEEEEeeceEEEEEeC---------CceeEEeeccccCc
Q 000242 1300 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLVGLCHVSELSE 1370 (1801)
Q Consensus 1300 l~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l~~---------~~v~gl~~~sel~~ 1370 (1801)
+++|.++++|.+. ||.. ....+++|++|.|+|+++.++|+||+|.. .++.|++|++++++
T Consensus 41 ~~id~~~~~Isv~-------P~~~----~~~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~ 109 (189)
T PRK09521 41 VFIDDINRKISVI-------PFKK----TPPLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSD 109 (189)
T ss_pred EEEcCCCCEEEEe-------cCcC----CCCCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcCh
Confidence 3457667777763 3321 13467899999999999999999999952 25889999999999
Q ss_pred ccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccccc
Q 000242 1371 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1409 (1801)
Q Consensus 1371 ~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~~~ 1409 (1801)
.+..++.+.|++||.|+|+|++++ +++.||+|...+
T Consensus 110 ~~~~~~~~~~~~GD~V~akV~~i~---~~i~LS~k~~~l 145 (189)
T PRK09521 110 GYVESLTDAFKIGDIVRAKVISYT---DPLQLSTKGKDL 145 (189)
T ss_pred hhhhhHHhccCCCCEEEEEEEecC---CcEEEEEecCCc
Confidence 888889999999999999999998 789999997544
No 205
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=98.64 E-value=1.7e-07 Score=87.54 Aligned_cols=67 Identities=25% Similarity=0.442 Sum_probs=61.4
Q ss_pred ccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000242 621 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 696 (1801)
Q Consensus 621 ~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSl 696 (1801)
.+++++.|+.+.|.|++++++|+||++.+++.||+|.+++. ..|++||+++++|.++ .+++|+.+|+
T Consensus 10 ~~~~~~~G~~~~g~V~~i~~~G~fV~l~~~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 10 TMEDLEVGKLYKGKVNGVAKYGVFVDLNDHVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred chhhCCCCCEEEEEEEeEecceEEEEECCCcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 45678899999999999999999999999999999999873 4599999999999999 8899999885
No 206
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=98.63 E-value=1.2e-07 Score=90.59 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=65.9
Q ss_pred cCCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEEcccCCC---cccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000242 1241 DLSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSD---GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315 (1801)
Q Consensus 1241 ~l~~G~~v~G~V~~v~~~--G~fV~l~~~v~g~v~~s~lsd---~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~ 1315 (1801)
.+++|+++.|+|+++.++ |+||+++++.+||+|+++++| ..+.++.+.|++||.|.|+|+......+...||.+.
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~~ 83 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGLGKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTNI 83 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCCCCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEEE
Confidence 367999999999999996 999999999999999999999 567888899999999999999987766666666543
No 207
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=98.62 E-value=1.3e-07 Score=90.19 Aligned_cols=70 Identities=19% Similarity=0.335 Sum_probs=61.8
Q ss_pred CCCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCccccc-----------CcccCccCCCEEEEEEEEeeCCCCeEEE
Q 000242 627 PNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRA-----------DLSKTYYVGQSVRSNILDVNSETGRITL 694 (1801)
Q Consensus 627 ~G~~~~G~V~~i~~~G~fV~f~~-~~~Glv~~s~~s~~~~~-----------~~~~~~~~Gq~V~~~V~~vd~~~~ri~l 694 (1801)
.|+.+.|+|++++++|+||++.+ ++.||+|.+++++++.. .+...|++||.|+|+|+++|.+++++.+
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 37899999999999999999998 89999999999865321 3457799999999999999999999999
Q ss_pred ee
Q 000242 695 SL 696 (1801)
Q Consensus 695 Sl 696 (1801)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
No 208
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.62 E-value=1.1e-07 Score=87.36 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=58.3
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcc--cCCccccCCCCcEEEEEEEEEeCCC
Q 000242 1245 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLS 1306 (1801)
Q Consensus 1245 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~--~~~~~~~f~~G~~V~~~Vl~vd~~~ 1306 (1801)
|++|.|+|+++.++|+||.++.+++|++|+++++++| ..+|.+.|++||.|+|+|+++|.++
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~ 64 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAK 64 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCCCcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCcc
Confidence 7899999999999999999999999999999999986 7889999999999999999999644
No 209
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=4.3e-08 Score=121.11 Aligned_cols=104 Identities=26% Similarity=0.566 Sum_probs=84.7
Q ss_pred EEEeCCCCEEEEEEecCcccccccccc-cccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCccc
Q 000242 1300 LSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1378 (1801)
Q Consensus 1300 l~vd~~~~ri~lSlk~~~~~~~~~~~~-~~~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~ 1378 (1801)
+.++ +++.+..+-............+ ....++++|+++.|+|+++.+||+||.|.+ +-+||||+|++++.++.+..+
T Consensus 585 Idie-ddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~l~~-gkdgl~hiS~~~~~rv~kv~d 662 (692)
T COG1185 585 IDIE-DDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLP-GKDGLVHISQLAKERVEKVED 662 (692)
T ss_pred EEec-CCCcEEEEecchHHHHHHHHHHHHHHhhcccccEEEEEEEEEeecceEEEecC-CcceeEEehhhhhhhhhcccc
Confidence 3455 5777777765533211111111 124689999999999999999999999998 899999999999999999999
Q ss_pred ccCCCCEEEEEEEEEecCCCeeEEeecc
Q 000242 1379 IYRAGEKVKVKILKVDKEKRRISLGMKS 1406 (1801)
Q Consensus 1379 ~~~~Gd~V~~~Vl~id~e~~ri~lslK~ 1406 (1801)
.+++||.|+++++.+| +++|+.|++|.
T Consensus 663 vlk~Gd~v~Vkv~~iD-~~Gri~ls~~~ 689 (692)
T COG1185 663 VLKEGDEVKVKVIEID-KQGRIRLSIKA 689 (692)
T ss_pred eeecCceEEEEEeeec-ccCCccceehh
Confidence 9999999999999999 68999999986
No 210
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=4.5e-06 Score=96.50 Aligned_cols=217 Identities=14% Similarity=0.146 Sum_probs=173.6
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---HHHcCCCCHH
Q 000242 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL---ENEYGNPPEE 1610 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~l---e~~~g~~~~e 1610 (1801)
..++...-+.++..+..++.+..+-+......|++++|.+.|..||..-. .+ -.++.|. ...++ ..+
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-----sc---~ealfniglt~e~~~--~ld 541 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-----SC---TEALFNIGLTAEALG--NLD 541 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-----HH---HHHHHHhcccHHHhc--CHH
Confidence 66677777788888888888888888888889999999999999995322 11 2233333 34556 568
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHh
Q 000242 1611 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1688 (1801)
Q Consensus 1611 ~a~~vferAl~~~~~-~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~ 1688 (1801)
+|.+.|-+.-...-. -++..+++++|+...+...|.++|.++....|.++.+...++..|-+. +-..|.+++-.....
T Consensus 542 eald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 542 EALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 899988887655433 489999999999999999999999999999999999999999999888 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000242 1689 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI-YLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1689 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~-y~~le~k~gd~e~ar~lferal~~~~~pk~~ 1765 (1801)
+|.+ ++..--+|.++....-.+.|..+||++--.-|... -|.. .+.+..+.|++++|..+|...-+ ++| .+.
T Consensus 622 fp~n--ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsgnyqka~d~yk~~hr-kfp-edl 694 (840)
T KOG2003|consen 622 FPCN--IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSGNYQKAFDLYKDIHR-KFP-EDL 694 (840)
T ss_pred cCcc--hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcccHHHHHHHHHHHHH-hCc-cch
Confidence 9988 45555566667777778999999999988888754 4544 45566789999999999998777 455 444
No 211
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.61 E-value=6.7e-07 Score=94.94 Aligned_cols=117 Identities=9% Similarity=-0.050 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1645 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1723 (1801)
Q Consensus 1645 A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~ 1723 (1801)
-..+|+++++..|+ .|..++..+... ++++|...|++++...|.+ ..+|..+|..+...|++++|...|++++.
T Consensus 12 ~~~~~~~al~~~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPE---TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS--WRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35788999987654 477888888888 9999999999999999987 58999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHH
Q 000242 1724 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1769 (1801)
Q Consensus 1724 ~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw 1769 (1801)
..|.+.+.|..++..+.+.|+++.|+..|++++. +.|..+ ..|
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~-~~~ 129 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADA-SWS 129 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHH
Confidence 9999999999999999999999999999999999 778777 355
No 212
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.60 E-value=1.1e-06 Score=92.28 Aligned_cols=117 Identities=10% Similarity=-0.029 Sum_probs=81.5
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC
Q 000242 1614 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1691 (1801)
Q Consensus 1614 ~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1691 (1801)
+.|++++...|.. .....++..+.+.+++++|.+.|++++..+|.+..+|..++.++... ++++|...|+++++..|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3566777766654 55666677777777777777777777777777777777777777777 777777777777777666
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000242 1692 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1732 (1801)
Q Consensus 1692 ~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw 1732 (1801)
. ...|..+|.++...|++++|...|+++++..|.+...+
T Consensus 84 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D--PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 5 36667777777777777777777777777777665543
No 213
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=98.60 E-value=1e-07 Score=109.59 Aligned_cols=76 Identities=26% Similarity=0.359 Sum_probs=71.4
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC--CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000242 626 HPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701 (1801)
Q Consensus 626 ~~G~~~~G~V~~i~~~G~fV~f~~--~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~ 701 (1801)
++|+.+.|+|+++.++|+||++.+ |+.||+|.|+++++++.++.+.|++||.|.|+|+++|++++++.||+|....
T Consensus 7 ~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~v~~ 84 (262)
T PRK03987 7 EEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKRVNE 84 (262)
T ss_pred CCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEeccc
Confidence 479999999999999999999975 8999999999999999999999999999999999999999999999996653
No 214
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.58 E-value=1.9e-07 Score=88.74 Aligned_cols=73 Identities=21% Similarity=0.168 Sum_probs=69.0
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000242 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~ 1316 (1801)
++|++|.|+|+++.+.|++|+++...+|++|+++++..+..++.+.|++|+.+.|+|++++.+ +++.||.+..
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~ 77 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADN 77 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCC
Confidence 689999999999999999999999999999999999988888889999999999999999976 9999999864
No 215
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.58 E-value=6.6e-05 Score=87.88 Aligned_cols=251 Identities=15% Similarity=0.123 Sum_probs=168.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000242 1531 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1610 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e 1610 (1801)
.++.+++.....+.-...+.....++--+..--+.|+.+.|-.+..++-+.-+... +.+-+....+....+ +.+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~----l~v~ltrarlll~~~--d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT----LAVELTRARLLLNRR--DYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch----HHHHHHHHHHHHhCC--Cch
Confidence 44454444444443233333334444444444566788888777777765433222 455666666666777 447
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHh----------------------------------
Q 000242 1611 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKK---------------------------------- 1655 (1801)
Q Consensus 1611 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~---------------------------------- 1655 (1801)
.|+....+++...|.. .+-.-..++|.+.|.+.....+..++.+.
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 7888888888777764 44444445565566555555554443332
Q ss_pred --------cCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000242 1656 --------FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1726 (1801)
Q Consensus 1656 --------~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P 1726 (1801)
-+.++.+-..|+..+.+. ..++|.++.+.+++..-+. .+...+.. .+.++++.=....|..++..|
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~---~L~~~~~~--l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP---RLCRLIPR--LRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh---hHHHHHhh--cCCCCchHHHHHHHHHHHhCC
Confidence 124566677788888888 8888888888888775333 33333332 245678888888899999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000242 1727 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796 (1801)
Q Consensus 1727 ~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v 1796 (1801)
.++.+|+.++.++++.+...+|...|+.|+. ..|... -|....+...+.|+.+.+.++++.|+-..
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~--~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSAS--DYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChh--hHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 444433 45555566778999999999999998543
No 216
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=98.57 E-value=1.2e-07 Score=124.66 Aligned_cols=76 Identities=36% Similarity=0.688 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1330 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1330 ~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
.++++|++|.|+|+++.+||+||+|.+ +.+||+|+|++++.++.++.+.|++||.|+++|+++|.+ +||.||+|..
T Consensus 617 ~~~~vG~v~~G~V~~I~~fGafVei~~-~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~~ 692 (693)
T PRK11824 617 AEPEVGEIYEGKVVRIVDFGAFVEILP-GKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKAV 692 (693)
T ss_pred ccCcCCeEEEEEEEEEECCeEEEEECC-CCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEec
Confidence 468999999999999999999999986 899999999999999999999999999999999999976 9999999863
No 217
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=98.55 E-value=1.4e-07 Score=85.10 Aligned_cols=65 Identities=35% Similarity=0.527 Sum_probs=60.6
Q ss_pred EEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000242 631 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 695 (1801)
Q Consensus 631 ~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lS 695 (1801)
+.|+|.++.++|+||++.+++.||+|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 36999999999999999999999999999998877788889999999999999999999999876
No 218
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=9.3e-06 Score=106.84 Aligned_cols=211 Identities=13% Similarity=0.056 Sum_probs=136.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC----------------CHH
Q 000242 1547 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP----------------PEE 1610 (1801)
Q Consensus 1547 ~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~----------------~~e 1610 (1801)
-+|.+..+|..++..+...+++++|.++.+.+++..|.+- .+|....-++.+.+++ ..+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i-----~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~ 100 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI-----SALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWA 100 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce-----ehHHHHHHHHHhhcchhhhhhhhhhhhcccccchh
Confidence 4689999999999999999999999999999998777533 3444444444444421 012
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCC
Q 000242 1611 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLP 1690 (1801)
Q Consensus 1611 ~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p 1690 (1801)
....++.+.+.+.....++..++.+|.+.|+.++|.++|+++++..|+++.+..+||-++...+.++|++++.+|++.+-
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22233333333333346888899999999999999999999999999999999999988776699999999999987642
Q ss_pred CCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 000242 1691 RHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYP--KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1764 (1801)
Q Consensus 1691 ~~~~----~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P--~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~ 1764 (1801)
..++ ..+|..+..... -+.+.=..+.++++.+.- .-.++|...-..|...++++++..+|++++. ..|++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~--~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n 256 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNS--DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKN 256 (906)
T ss_pred hhhcchHHHHHHHHHHhcCc--ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcc
Confidence 2111 123333322111 112222222222222211 1123344444445566778888888888888 55665
Q ss_pred HH
Q 000242 1765 MK 1766 (1801)
Q Consensus 1765 ~k 1766 (1801)
.+
T Consensus 257 ~~ 258 (906)
T PRK14720 257 NK 258 (906)
T ss_pred hh
Confidence 53
No 219
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.52 E-value=1.7e-06 Score=90.85 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=106.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000242 1647 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1725 (1801)
Q Consensus 1647 ~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~ 1725 (1801)
+.|++++...|.+....+.++..+... ++++|.+.|++++...|.+ ..+|..+|.+++..|++++|..+|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468889998898889999999999999 9999999999999999886 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000242 1726 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1726 P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~ 1765 (1801)
|.+.+.|..++.++...|+.++|...|++++. +.|+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 119 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENP 119 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccc
Confidence 99999999999999999999999999999999 666554
No 220
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.50 E-value=1.1e-05 Score=100.59 Aligned_cols=220 Identities=18% Similarity=0.212 Sum_probs=172.4
Q ss_pred CcHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc--------------hh-h-------HHH
Q 000242 1536 RTPDEFERLVRSSP-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--------------EN-E-------KLN 1592 (1801)
Q Consensus 1536 ~a~~~fer~L~~~P-~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~e--------------e~-e-------~l~ 1592 (1801)
.|.+...++|..+| ++...|.-++..+-.++++..|..+-+-++...+... +. + ++.
T Consensus 496 sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 496 SALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 34445567777744 6899999999999999999999999999998776411 01 1 234
Q ss_pred HHHHHHHHHHHcCCC--------------CHHHHHHHHHHHHhcC-------------C--------C------HHHHHH
Q 000242 1593 IWVAYFNLENEYGNP--------------PEEAVVKVFQRALQYC-------------D--------P------KKVHLA 1631 (1801)
Q Consensus 1593 lW~a~l~le~~~g~~--------------~~e~a~~vferAl~~~-------------~--------~------~~v~~~ 1631 (1801)
+|-+.-.++...++. +...+...++++.... | . ..+|..
T Consensus 576 ~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwll 655 (799)
T KOG4162|consen 576 LWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLL 655 (799)
T ss_pred HHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHH
Confidence 565322222111110 1122333333333211 1 1 278999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000242 1632 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710 (1801)
Q Consensus 1632 l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~ 1710 (1801)
.+..+...+..++|...+.++-+.++-...+|+..+..+... +.++|.+.|.-|+..+|.+ +......|.++.+.|+
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h--v~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH--VPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999 9999999999999999987 5899999999999996
Q ss_pred HH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1711 AD--RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1711 ~e--~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
.. .+|.++..+++.+|.+.+.|+.++....+.|+.++|-.+|.-|++
T Consensus 734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 54 555699999999999999999999999999999999999999998
No 221
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=98.49 E-value=2.8e-07 Score=83.07 Aligned_cols=65 Identities=34% Similarity=0.581 Sum_probs=61.2
Q ss_pred EEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000242 1248 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1312 (1801)
Q Consensus 1248 v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lS 1312 (1801)
+.|+|+++.++|+||+++.+.+|++|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 47999999999999999999999999999999988888899999999999999999989998875
No 222
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.44 E-value=7.2e-05 Score=91.88 Aligned_cols=148 Identities=10% Similarity=0.080 Sum_probs=103.2
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000242 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~ 1613 (1801)
..+|+..|..+|...|+|..+|..++-.+.|.++++.....-.+.++..|... .-|+.++--....+++ ..|.
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r-----a~w~~~Avs~~L~g~y--~~A~ 163 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR-----ASWIGFAVAQHLLGEY--KMAL 163 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHH--HHHH
Confidence 55778888999999999999999999988999998888888888887766432 4788887776666643 5555
Q ss_pred HHHHHHHhcC---CCH----------------------------------------HHHHHHHHHHHHhCChHHHHHHHH
Q 000242 1614 KVFQRALQYC---DPK----------------------------------------KVHLALLGLYERTEQNKLADELLY 1650 (1801)
Q Consensus 1614 ~vferAl~~~---~~~----------------------------------------~v~~~l~~i~~~~g~~~~A~~~~~ 1650 (1801)
.+.+...+.+ ++. ..-...+.++.+.+++++|..+|.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 5554444433 221 111122237788999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHh
Q 000242 1651 KMIKKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLS 1688 (1801)
Q Consensus 1651 ~~~k~~~~~~~~w~~~a~~~~~~--~~~~A~~ll~ralk~ 1688 (1801)
+++.++|++...+..+-..+... ..+....+|.+.-+.
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 99999999988888777766432 222222455543333
No 223
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=98.44 E-value=4.3e-07 Score=119.40 Aligned_cols=75 Identities=25% Similarity=0.428 Sum_probs=71.5
Q ss_pred ccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000242 623 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 698 (1801)
Q Consensus 623 ~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~ 698 (1801)
.+.++|+++.|.|+++++||+||++.++..||+|+|+++++++.++.+.|++||.|+|+|+++|++ +|+.||+|.
T Consensus 617 ~~~~vG~v~~G~V~~I~~fGafVei~~~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~ 691 (693)
T PRK11824 617 AEPEVGEIYEGKVVRIVDFGAFVEILPGKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKA 691 (693)
T ss_pred ccCcCCeEEEEEEEEEECCeEEEEECCCCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEe
Confidence 457899999999999999999999999999999999999999999999999999999999999987 999999985
No 224
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core.
Probab=98.44 E-value=6.5e-07 Score=88.28 Aligned_cols=73 Identities=25% Similarity=0.539 Sum_probs=63.3
Q ss_pred cEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccC-----------cccccCCCCEEEEEEEEEecCC-----Ce
Q 000242 1336 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-----------IETIYRAGEKVKVKILKVDKEK-----RR 1399 (1801)
Q Consensus 1336 ~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~-----------~~~~~~~Gd~V~~~Vl~id~e~-----~r 1399 (1801)
+++.|+|+++.++|+||+|. +++|++|++++++++... ....|++||.|+++|.++|.+. ++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~--~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~ 78 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG--PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESK 78 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc--CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCce
Confidence 47899999999999999997 499999999998876543 3578999999999999999774 58
Q ss_pred eEEeecccccC
Q 000242 1400 ISLGMKSSYFK 1410 (1801)
Q Consensus 1400 i~lslK~~~~~ 1410 (1801)
|.||+|..+++
T Consensus 79 i~ls~k~~~~g 89 (99)
T cd04460 79 IGLTMRQPGLG 89 (99)
T ss_pred EEEEEecCCCC
Confidence 99999997663
No 225
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.42 E-value=6.4e-07 Score=79.72 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=56.3
Q ss_pred ccEEEEEEEEeecceeEEEecccCceeeEEeeeecCCc---------ccccCCeE-EEEEEEeecccceEEEeeh
Q 000242 741 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA---------TVESGSVI-QAAILDVAKAERLVDLSLK 805 (1801)
Q Consensus 741 G~~v~~~V~~~~~~g~~v~~~~~~~~~g~i~~~~ls~~---------~~~~G~~v-~~~vl~~~~~~~~v~ls~k 805 (1801)
|++|+|+|.++++++++|++.+. ++.|++|..||||+ ++++||++ .++|+ +...+.+.+|.|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l~~~-~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL--~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAILPE-EIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCL--SNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEecCC-CcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEE--eccccEEEEecC
Confidence 78999999999999999999986 89999999999993 79999999 66677 889999988865
No 226
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=1.2e-05 Score=96.15 Aligned_cols=130 Identities=14% Similarity=0.037 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000242 1626 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1704 (1801)
Q Consensus 1626 ~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l 1704 (1801)
...|+..+--+.+.+++++|+..+..+++..|+++-.|...++.+++. +..+|.+.|++|+...|.. .-+|+.||+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~a 383 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQA 383 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHH
Confidence 478888888899999999999999999999999999999999999999 9999999999999999998 4899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1705 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1705 e~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
+++.|++.+|..++.+.+..+|.++..|..+++.|..+|+..++...+-....
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877766665
No 227
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=98.38 E-value=2.3e-06 Score=94.88 Aligned_cols=74 Identities=30% Similarity=0.420 Sum_probs=67.4
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeC----------CCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEE
Q 000242 1240 EDLSPNMIVQGYVKNVTSKGCFIMLS----------RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1309 (1801)
Q Consensus 1240 ~~l~~G~~v~G~V~~v~~~G~fV~l~----------~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri 1309 (1801)
..+++|++|.|+|+++.++|+||+|+ .+..|++|++++++.+..++.+.|++||.|.|+|++++ +++
T Consensus 60 ~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~~~~~~~~~~~~~GD~V~akV~~i~---~~i 136 (189)
T PRK09521 60 PLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSDGYVESLTDAFKIGDIVRAKVISYT---DPL 136 (189)
T ss_pred CCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcChhhhhhHHhccCCCCEEEEEEEecC---CcE
Confidence 34679999999999999999999984 46899999999999988899999999999999999998 789
Q ss_pred EEEEecC
Q 000242 1310 EVTLKTS 1316 (1801)
Q Consensus 1310 ~lSlk~~ 1316 (1801)
.||+|..
T Consensus 137 ~LS~k~~ 143 (189)
T PRK09521 137 QLSTKGK 143 (189)
T ss_pred EEEEecC
Confidence 9999853
No 228
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=1.6e-05 Score=104.72 Aligned_cols=197 Identities=11% Similarity=0.109 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH--------
Q 000242 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-------- 1660 (1801)
Q Consensus 1590 ~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~-------- 1660 (1801)
....|.++++.+...+ ..++|.++.+.+++.+|.. ..|+.++.+|.+.+++.++.-+ +++..++...
T Consensus 30 n~~a~~~Li~~~~~~~--~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSEN--LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 4679999999998888 5699999999999999986 8888888899888888877666 6666665544
Q ss_pred -----------HHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 000242 1661 -----------KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK- 1727 (1801)
Q Consensus 1661 -----------~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~- 1727 (1801)
.+.+.+|.+|.+. +.++|.++|+++|+..|.+ +.+..+||.++... +.++|++++.+|+..+=+
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~ 182 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--PEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK 182 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh
Confidence 6777777777777 8888888888888888766 47778888777777 888888888888765422
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000242 1728 -----RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1796 (1801)
Q Consensus 1728 -----~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v 1796 (1801)
-.++|..|+.... .+.+.-..+.++++. ..-..++-.+|.-.-....+..+++.+..++.+++++=
T Consensus 183 kq~~~~~e~W~k~~~~~~--~d~d~f~~i~~ki~~-~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYNS--DDFDFFLRIERKVLG-HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred hcchHHHHHHHHHHhcCc--ccchHHHHHHHHHHh-hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 1346777665432 233333333344433 11222232344444444455566777777777777653
No 229
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.37 E-value=0.00017 Score=91.59 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=40.3
Q ss_pred HHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 000242 1667 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1745 (1801)
Q Consensus 1667 a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~ 1745 (1801)
++++... ++++|.++.++|+...|+. +++++.-|.++...|++.+|-..++.|-..++.+--+-...+..+++.|++
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~--~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTL--VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCH
Confidence 3434333 4444444444444444443 344444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHH
Q 000242 1746 DLIRGLFERAI 1756 (1801)
Q Consensus 1746 e~ar~lferal 1756 (1801)
+.|..++..-+
T Consensus 279 e~A~~~~~~Ft 289 (517)
T PF12569_consen 279 EEAEKTASLFT 289 (517)
T ss_pred HHHHHHHHhhc
Confidence 44444444433
No 230
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=98.35 E-value=6e-07 Score=117.66 Aligned_cols=71 Identities=37% Similarity=0.714 Sum_probs=66.3
Q ss_pred CCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEE
Q 000242 1330 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1402 (1801)
Q Consensus 1330 ~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~l 1402 (1801)
..+++|++|.|+|+++.+||+||+|.+ +++||+|+|++++.++.++.+.|++||.|+++|+++|. ++||+|
T Consensus 614 ~~~~~G~i~~G~V~~I~~~GafVei~~-g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 614 AEPEVGKIYEGKVVRIMDFGAFVEILP-GKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred cccccCcEEEEEEEEEeCCEEEEEECC-CcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 467899999999999999999999987 79999999999999999999999999999999999996 788764
No 231
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.33 E-value=0.00018 Score=84.39 Aligned_cols=223 Identities=14% Similarity=0.167 Sum_probs=171.1
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchhhHHHH--HHHH
Q 000242 1521 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLNI--WVAY 1597 (1801)
Q Consensus 1521 ~~~~~e~~~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~-~ee~e~l~l--W~a~ 1597 (1801)
+++..+..+..++.|.++.-.++++...|.+.....-...+|.+.|++.....+....-+.--. .+|..++.- |...
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 5677777777788999999999999999999999999999999999999999988777664322 344445433 3333
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000242 1598 FNLENEYGNPPEEAVVKVFQRALQYCDP-----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1672 (1801)
Q Consensus 1598 l~le~~~g~~~~e~a~~vferAl~~~~~-----~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~ 1672 (1801)
++ +..+ .+-+. -.....+..|. .++-..++.-+.+.|.+++|.++.+.++++.-+.. +..++-+
T Consensus 236 L~---q~~~--~~~~~-gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~ 304 (400)
T COG3071 236 LQ---QARD--DNGSE-GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPR 304 (400)
T ss_pred HH---HHhc--cccch-HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhh
Confidence 33 2221 11111 12233333343 37888999999999999999999999999864443 2222222
Q ss_pred h---CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 000242 1673 Q---QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1749 (1801)
Q Consensus 1673 ~---~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar 1749 (1801)
. ++..-.+..+..++..|... .+++.+++++++++.+.+|.+.|+.+++.-|.- .-|...++.+.+.|+.+.|.
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAE 381 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHH
Confidence 2 77888888899999999885 899999999999999999999999999887764 55777888899999999999
Q ss_pred HHHHHHHh
Q 000242 1750 GLFERAIS 1757 (1801)
Q Consensus 1750 ~lferal~ 1757 (1801)
.+++.++.
T Consensus 382 ~~r~e~L~ 389 (400)
T COG3071 382 QVRREALL 389 (400)
T ss_pred HHHHHHHH
Confidence 99999986
No 232
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.33 E-value=1.5e-05 Score=96.37 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=109.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000242 1538 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1617 (1801)
Q Consensus 1538 ~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vfe 1617 (1801)
...|++.+..+|++..+|++|+.++...-........ .... ..+.-..+|+
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~---------------------------~~~a--~~E~klsile 55 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKA---------------------------ERRA--LAERKLSILE 55 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchh---------------------------hHHH--HHHHHHHHHH
Confidence 3467889999999999999999997654321111100 0001 1244455666
Q ss_pred HHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CHHHHHHHHHHHHHhCCCC
Q 000242 1618 RALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRH 1692 (1801)
Q Consensus 1618 rAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~----~~~~A~~ll~ralk~~p~~ 1692 (1801)
||++.+|.. .+++.|+..+.+....++..+.+++++..+|.+..+|..|..+.... .+...+..|.++|..+...
T Consensus 56 rAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~ 135 (321)
T PF08424_consen 56 RALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR 135 (321)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Confidence 666666643 66666666666666666667777777777777777777777777664 5677777777776654321
Q ss_pred ----------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000242 1693 ----------------KHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1725 (1801)
Q Consensus 1693 ----------------~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~ 1725 (1801)
..+.++.+++.|+.+.|-.|+|..+++.++..+
T Consensus 136 ~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 136 RSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 125788899999999999999999999999864
No 233
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.2e-05 Score=93.52 Aligned_cols=252 Identities=13% Similarity=0.066 Sum_probs=180.4
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000242 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~ 1613 (1801)
..++...|..++...|+++..|..-++.++..++++.|.--++..++.-+... + -.....++....+ +..+|.
T Consensus 65 Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~---k--~~~r~~~c~~a~~--~~i~A~ 137 (486)
T KOG0550|consen 65 YGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS---K--GQLREGQCHLALS--DLIEAE 137 (486)
T ss_pred HHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc---c--cccchhhhhhhhH--HHHHHH
Confidence 55778899999999999999999999999999999999999988886444321 1 0111111111222 112222
Q ss_pred HHH------------HHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q 000242 1614 KVF------------QRALQYCDP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1673 (1801)
Q Consensus 1614 ~vf------------erAl~~~~~-------~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~- 1673 (1801)
..| .+.-...+. ...-+.-+.++...+.+++|.+.--..++..+.+....+..+..+...
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~ 217 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYND 217 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccccc
Confidence 111 111111221 133344455778889999999998888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHH
Q 000242 1674 QQEGVQAVVQRALLSLPRHKH----------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQE 1739 (1801)
Q Consensus 1674 ~~~~A~~ll~ralk~~p~~~~----------~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~d----lw~~y~~le 1739 (1801)
+.+.|...|+++|...|.+.. ++.|..-+.-.++.|.+..|.+.|-.+|..+|.+.. ++...+...
T Consensus 218 ~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~ 297 (486)
T KOG0550|consen 218 NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN 297 (486)
T ss_pred chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence 999999999999999988532 467888888888999999999999999999998644 566667777
Q ss_pred HHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000242 1740 IRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1740 ~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~ 1795 (1801)
.++|....|..-.++|+. +.+.-.+ .+.+......-.++++++.+-|++|++.
T Consensus 298 ~rLgrl~eaisdc~~Al~--iD~syik-all~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 298 IRLGRLREAISDCNEALK--IDSSYIK-ALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred cccCCchhhhhhhhhhhh--cCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999998 7765543 2222233344456677777777777764
No 234
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.31 E-value=3.6e-05 Score=97.87 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Q 000242 1609 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1686 (1801)
Q Consensus 1609 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ral 1686 (1801)
.+.+...|-||++..+.. ..|..|+.+|...-+...|...|.+|....+.....|-..+..+.+. ..+.|..+.-++-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 578899999999999886 99999999999999999999999999999999999999999999999 9999999998888
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHH
Q 000242 1687 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK 1766 (1801)
Q Consensus 1687 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k 1766 (1801)
+..|.......|...+-++.+.++...|..-|+.+++..|++...|..++..|-..|.+..|...|.+|.. +.|..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-- 629 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-- 629 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh--
Confidence 88887766678999888999999999999999999999999999999999999999999999999999998 66653
Q ss_pred HHHHHHH--HHHHHcCCHHHHHHHHHHHHH
Q 000242 1767 FLFKKYL--EYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1767 ~lw~~yl--~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
.+.+|- .+|...|.++++.+.+...+.
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333443 457778888888776665443
No 235
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.30 E-value=0.00012 Score=93.03 Aligned_cols=224 Identities=13% Similarity=0.129 Sum_probs=158.1
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCcchhhHH-----------HHHH
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM-----ADVEKARSIAERALQTINIREENEKL-----------NIWV 1595 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~-----~e~d~Ar~~~eral~~i~~~ee~e~l-----------~lW~ 1595 (1801)
++..+|...|..+|..||+|...+..|....... ...+...++|+......|...-..++ ..-.
T Consensus 52 g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~ 131 (517)
T PF12569_consen 52 GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLD 131 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHH
Confidence 5578899999999999999999998888887322 25677778888776555432211111 2233
Q ss_pred HHHHHHHHcCCC-----------CH---HHHHHHHHHHH---hcC-------------CCHHHH--HHHHHHHHHhCChH
Q 000242 1596 AYFNLENEYGNP-----------PE---EAVVKVFQRAL---QYC-------------DPKKVH--LALLGLYERTEQNK 1643 (1801)
Q Consensus 1596 a~l~le~~~g~~-----------~~---e~a~~vferAl---~~~-------------~~~~v~--~~l~~i~~~~g~~~ 1643 (1801)
.|+.-...-|-| +. +....+++..+ +.+ |..-+| +-+++.|...|+++
T Consensus 132 ~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~ 211 (517)
T PF12569_consen 132 EYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYE 211 (517)
T ss_pred HHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHH
Confidence 344333333321 11 22222333322 111 112456 55588999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1644 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1722 (1801)
Q Consensus 1644 ~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al 1722 (1801)
+|.+..++++...|..++.++..|.++... ++.+|.+.++.|-+.++.+. -+-...+..+++.|+.++|..++....
T Consensus 212 ~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR--yiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 212 KALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR--YINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999 99999999999999987764 577888999999999999999998887
Q ss_pred HhC--CC-CH----HHHHHHHHHH--HHcCChHHHHHHHHHHHh
Q 000242 1723 SEY--PK-RT----DLWSIYLDQE--IRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1723 ~~~--P~-~~----dlw~~y~~le--~k~gd~e~ar~lferal~ 1757 (1801)
+.. |. +. -+|+....-+ .+.|++..|...|..+..
T Consensus 290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 655 22 11 1566665543 367888888777777664
No 236
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.2e-05 Score=95.87 Aligned_cols=98 Identities=20% Similarity=0.312 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 000242 1643 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSMFEG 1720 (1801)
Q Consensus 1643 ~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~-~e~Ar~lfe~ 1720 (1801)
.+...+|++++.+|+.+.++|..|+.|..+. .+.+...+|..||..+|.+ +.+|...|.+++..+. .+.||.+|.+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~--~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN--PDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--chhHHhhhhhHHhhccchHHHHHHHHH
Confidence 3567889999999999999999999999888 7999999999999999998 4899999999998775 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHc
Q 000242 1721 ILSEYPKRTDLWSIYLDQEIRL 1742 (1801)
Q Consensus 1721 al~~~P~~~dlw~~y~~le~k~ 1742 (1801)
+|+.+|.++.+|..|.+||...
T Consensus 166 gLR~npdsp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFRMELMY 187 (568)
T ss_pred HhhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 237
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.30 E-value=6e-05 Score=84.03 Aligned_cols=158 Identities=11% Similarity=0.036 Sum_probs=121.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 000242 1595 VAYFNLENEYGNPPEEAVVKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1673 (1801)
Q Consensus 1595 ~a~l~le~~~g~~~~e~a~~vferAl-~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~ 1673 (1801)
..+.+.+...|. -+....+...+. .+.....+...++....+.|++..|...+.++....|++.++|..++-.|.+.
T Consensus 70 ~~~a~a~~~~G~--a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGD--ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhccc--ccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 555555566663 344444444433 33334467767888888888888888888888888888888888888888888
Q ss_pred -CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 000242 1674 -QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1752 (1801)
Q Consensus 1674 -~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lf 1752 (1801)
+++.|+..|.+|++..|... .+..+.+..++-.|+++.|++++..+....+.+..+-..++......|+++.|+.+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888888888888774 788888888888888888888888888888878888888888888888888888877
Q ss_pred HHHH
Q 000242 1753 ERAI 1756 (1801)
Q Consensus 1753 eral 1756 (1801)
..-+
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6633
No 238
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=98.27 E-value=4.7e-06 Score=95.22 Aligned_cols=79 Identities=25% Similarity=0.370 Sum_probs=70.2
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccc----cCcccccCCCCEEEEEEEEEecCCCeeEEeecc
Q 000242 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----DNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406 (1801)
Q Consensus 1331 ~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~----~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~ 1406 (1801)
-.++||+|.|+|+++.++|+||.|.. ...|++|++++++.++ .++...|++||.|+|+|+++++ .+++.||+|.
T Consensus 60 ~P~vGDiViG~V~~i~~~~~~vdI~~-~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~-~~~~~LS~k~ 137 (235)
T PRK04163 60 IPKVGDLVIGKVTDVTFSGWEVDINS-PYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDR-TRDVVLTLKG 137 (235)
T ss_pred cCCCCCEEEEEEEEEeCceEEEEeCC-CceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECC-CCcEEEEEcC
Confidence 45899999999999999999999985 7999999999999887 6788999999999999999985 4569999998
Q ss_pred cccCC
Q 000242 1407 SYFKN 1411 (1801)
Q Consensus 1407 ~~~~~ 1411 (1801)
.+++.
T Consensus 138 ~~lG~ 142 (235)
T PRK04163 138 KGLGK 142 (235)
T ss_pred CCCCc
Confidence 76643
No 239
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.25 E-value=5.6e-05 Score=92.79 Aligned_cols=216 Identities=16% Similarity=0.096 Sum_probs=160.2
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000242 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~ 1613 (1801)
-.+|-..-...++.++.|...|.-|+-++....++++|...|+.|++.-+. .+.+|..+.-+..+++ +.+-..
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-----N~qilrDlslLQ~QmR--d~~~~~ 129 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-----NLQILRDLSLLQIQMR--DYEGYL 129 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHH--hhhhHH
Confidence 445555556788889999999999999999999999999999999976553 2579999999999999 568888
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhC
Q 000242 1614 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1689 (1801)
Q Consensus 1614 ~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~--~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~ 1689 (1801)
..-.+.++..|.. --|+.++-.+.-.|.+..|..+.+...+.. +.+...+-..-.++.+. ...++-. ++.|++.+
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~-~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS-LQKALEHL 208 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHH
Confidence 8999999999986 789999999999999999999998888765 23444444444444443 2222211 44444433
Q ss_pred CCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHh
Q 000242 1690 PRHK-----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR-GLFERAIS 1757 (1801)
Q Consensus 1690 p~~~-----~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar-~lferal~ 1757 (1801)
-... ...+...-|.++++.+++++|..+|..++..+|++.+.+..|...+.+..+.-++. .+|.+.-+
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 2221 13455666778889999999999999999999999887777766665333333444 77776654
No 240
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=98.25 E-value=1.8e-06 Score=113.27 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=66.2
Q ss_pred ccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEE
Q 000242 623 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 694 (1801)
Q Consensus 623 ~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~l 694 (1801)
...++|+++.|.|+++++||+||++++++.||+|+|++++.++.++.+.|++||.|+|+|+++|. ++|+.|
T Consensus 614 ~~~~~G~i~~G~V~~I~~~GafVei~~g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 614 AEPEVGKIYEGKVVRIMDFGAFVEILPGKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred cccccCcEEEEEEEEEeCCEEEEEECCCcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 34689999999999999999999999999999999999999999999999999999999999997 677754
No 241
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.24 E-value=9.2e-05 Score=82.61 Aligned_cols=176 Identities=11% Similarity=0.062 Sum_probs=135.8
Q ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 000242 1536 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1615 (1801)
Q Consensus 1536 ~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~v 1615 (1801)
.+...+-+....+|++..+ ..+...+...|+-+.+..+...++...|. +. .+..+|.....+.|+ ...|...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~--d~---~ll~~~gk~~~~~g~--~~~A~~~ 122 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK--DR---ELLAAQGKNQIRNGN--FGEAVSV 122 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc--cH---HHHHHHHHHHHHhcc--hHHHHHH
Confidence 3444555566778888888 88888888888887777777765533332 21 244457777778884 4888888
Q ss_pred HHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC
Q 000242 1616 FQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1693 (1801)
Q Consensus 1616 ferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~ 1693 (1801)
|+||....|.+ ..|..++-+|.+.|+++.|+..|.++++.++..+.+..+++-+++-+ +++.|+.++.++...-+.+
T Consensus 123 ~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad- 201 (257)
T COG5010 123 LRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD- 201 (257)
T ss_pred HHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-
Confidence 88888888876 88888888888888888888888888888888888888888888888 8888888888887766545
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000242 1694 HIKFISQTAILEFKNGVADRGRSMFEGI 1721 (1801)
Q Consensus 1694 ~~~~~~~~a~le~~~g~~e~Ar~lfe~a 1721 (1801)
..+.-+++...-..|++++|+.+-..-
T Consensus 202 -~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 202 -SRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred -hHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 367788888888888888888876654
No 242
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=9.6e-05 Score=88.74 Aligned_cols=131 Identities=9% Similarity=0.062 Sum_probs=117.0
Q ss_pred CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000242 1657 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1735 (1801)
Q Consensus 1657 ~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y 1735 (1801)
+.....|+-.+.-+++. ++++|+..|...++..|++ +-+|...++++.+.++.++|.+.|++++..+|.+.-+|..|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N--~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN--PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 57888999999888888 9999999999999999988 47888889999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000242 1736 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1792 (1801)
Q Consensus 1736 ~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rA 1792 (1801)
++.+++.|++.+|..++.+.+. ..|.++ ..|....+-+.+.|+..++...+..+
T Consensus 381 a~all~~g~~~eai~~L~~~~~--~~p~dp-~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLF--NDPEDP-NGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCCCc-hHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 9999999999999999999998 666777 68988888888888877766554443
No 243
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.21 E-value=0.00012 Score=76.64 Aligned_cols=147 Identities=14% Similarity=0.087 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Q 000242 1610 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK-KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1687 (1801)
Q Consensus 1610 e~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k-~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1687 (1801)
+....-..+++...|...-.+.+++.....|++.+|...|++++. .|.++..+.+.+++..+.. ++..|...++...+
T Consensus 73 ~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 73 ERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 444444445555556667788999999999999999999999987 5789999999999999999 99999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH----HHHHHHHHHHh
Q 000242 1688 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD----LIRGLFERAIS 1757 (1801)
Q Consensus 1688 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e----~ar~lferal~ 1757 (1801)
..|....+.-.+.||..+...|.++.|++.||-++..+|. +.....|+.++.++|..+ +++++++++..
T Consensus 153 ~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 153 YNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred cCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 9998777788999999999999999999999999999996 577788999999998544 46678888776
No 244
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.20 E-value=6.2e-05 Score=91.08 Aligned_cols=148 Identities=20% Similarity=0.272 Sum_probs=119.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHh-C------------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000242 1647 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713 (1801)
Q Consensus 1647 ~~~~~~~k~~~~~~~~w~~~a~~~~~~-~------------~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~ 1713 (1801)
.-|++.++..|.+.+.|+.|+.+.... . .+....+|++||+.+|.+ ..++..|.....+.-+.+.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHH
Confidence 346677777777788888777776554 2 466778999999999866 5899999998888889999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHhc-----CCC----------chhHHHHHHHHHHH
Q 000242 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIR---LGDVDLIRGLFERAISL-----SLP----------PKKMKFLFKKYLEY 1775 (1801)
Q Consensus 1714 Ar~lfe~al~~~P~~~dlw~~y~~le~k---~gd~e~ar~lferal~~-----~~~----------pk~~k~lw~~yl~~ 1775 (1801)
....+++++..+|.+..+|..|+++... .-.++..+.+|.+++.. .-. ...+-.++.++..|
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875 23688999999999872 000 12244678899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHH
Q 000242 1776 EKSVGEEERIEYVKQKAMEYV 1796 (1801)
Q Consensus 1776 E~~~G~~e~a~~v~~rAl~~v 1796 (1801)
+.+.|-.+.|.++++-.+++-
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHH
Confidence 999999999999999998873
No 245
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.9e-05 Score=88.84 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CHHHHHHHH
Q 000242 1608 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVV 1682 (1801)
Q Consensus 1608 ~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~----~~~~A~~ll 1682 (1801)
+.+....-.+.-++.+|.+ +-|..|+.+|.+.|++..|...|.++.+.-|+++++|..|+..++.+ .-.+++.+|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3577777888889999986 99999999999999999999999999999999999999999988877 467899999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000242 1683 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1728 (1801)
Q Consensus 1683 ~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~ 1728 (1801)
++|++.+|.+ +...+.+|.-+++.|++.+|...|+..|...|.+
T Consensus 217 ~~al~~D~~~--iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 217 RQALALDPAN--IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9999998887 5888888999999999999999999999998876
No 246
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=98.18 E-value=6.6e-06 Score=74.65 Aligned_cols=63 Identities=19% Similarity=0.411 Sum_probs=54.7
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCC--CeEEEe
Q 000242 626 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLS 695 (1801)
Q Consensus 626 ~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~--~ri~lS 695 (1801)
+.|+.+.|+|.+++++|+||.+. +..||+|.++++. .+.|++|++|++.|++++.++ ..+.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig-~~eg~lp~~e~~~------~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLG-KVEAILPKKEQIP------GESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcC-CeEEEeeHHHCCC------CCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 46999999999999999999995 5999999999963 457999999999999999764 457776
No 247
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core.
Probab=98.17 E-value=5.7e-06 Score=81.60 Aligned_cols=76 Identities=20% Similarity=0.429 Sum_probs=65.2
Q ss_pred CEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCC-----------ccccCCCCcEEEEEEEEEeCCC-----CEE
Q 000242 1246 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES-----------PEKEFPIGKLVAGRVLSVEPLS-----KRV 1309 (1801)
Q Consensus 1246 ~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~-----------~~~~f~~G~~V~~~Vl~vd~~~-----~ri 1309 (1801)
+++.|.|+++.++|+||++. ++.|++|++++++++... +...|++||.|+++|.++|.+. +++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~-~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~i 79 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG-PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESKI 79 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc-CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCceE
Confidence 47899999999999999998 599999999999876532 3578999999999999999764 589
Q ss_pred EEEEecCcccccc
Q 000242 1310 EVTLKTSDSRTAS 1322 (1801)
Q Consensus 1310 ~lSlk~~~~~~~~ 1322 (1801)
.||++.....++.
T Consensus 80 ~ls~k~~~~g~~~ 92 (99)
T cd04460 80 GLTMRQPGLGKLE 92 (99)
T ss_pred EEEEecCCCCcHH
Confidence 9999988776543
No 248
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=2.6e-06 Score=105.77 Aligned_cols=103 Identities=19% Similarity=0.382 Sum_probs=81.9
Q ss_pred EEeecCCCeEEEeccc--hhhchhhcCCCccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccC
Q 000242 594 LVLDNESSNLLLSAKY--SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 671 (1801)
Q Consensus 594 l~~d~~~~~i~ls~K~--~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~ 671 (1801)
+.++ +.+++.++... ....+...+..-..++.+|+++.|+|+++.+||+||.|.+|-.||+|+|++++.++...++.
T Consensus 585 Idie-ddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~l~~gkdgl~hiS~~~~~rv~kv~dv 663 (692)
T COG1185 585 IDIE-DDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLPGKDGLVHISQLAKERVEKVEDV 663 (692)
T ss_pred EEec-CCCcEEEEecchHHHHHHHHHHHHHHhhcccccEEEEEEEEEeecceEEEecCCcceeEEehhhhhhhhhcccce
Confidence 4455 55665555432 11122222222235678999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000242 672 YYVGQSVRSNILDVNSETGRITLSLKQ 698 (1801)
Q Consensus 672 ~~~Gq~V~~~V~~vd~~~~ri~lSlk~ 698 (1801)
+++||.|.|+|+.+|+ .+|+.||++.
T Consensus 664 lk~Gd~v~Vkv~~iD~-~Gri~ls~~~ 689 (692)
T COG1185 664 LKEGDEVKVKVIEIDK-QGRIRLSIKA 689 (692)
T ss_pred eecCceEEEEEeeecc-cCCccceehh
Confidence 9999999999999995 7999999875
No 249
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.16 E-value=3e-05 Score=95.35 Aligned_cols=108 Identities=14% Similarity=0.021 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000242 1630 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708 (1801)
Q Consensus 1630 ~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1708 (1801)
...++.+...+++++|.+.|++++...|.+..+|+.++..+... ++++|...|++|++..|.+ ..+|..+|.+++..
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHh
Confidence 34456677889999999999999999999999999999999999 9999999999999998876 47899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000242 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1739 (1801)
Q Consensus 1709 g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le 1739 (1801)
|++++|...|++++...|.+..++.....+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999877644444443
No 250
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=98.13 E-value=1.1e-05 Score=73.10 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=54.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCC--CEEEEE
Q 000242 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--KRVEVT 1312 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~--~ri~lS 1312 (1801)
+.|++|+|+|.+++++|+||+++. .+|++|.++++ |.+.|++|+.|++.|++++.++ .+|.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig~-~eg~lp~~e~~------~~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLGK-VEAILPKKEQI------PGESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcCC-eEEEeeHHHCC------CCCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 479999999999999999999985 99999999997 3456899999999999999654 356666
No 251
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=98.12 E-value=2e-05 Score=90.11 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=64.6
Q ss_pred CCCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCCCC----CCCCCCccCCCEEEEEEEEEeCCCCeEEEEEee
Q 000242 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG----CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522 (1801)
Q Consensus 450 ~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~----~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~ 522 (1801)
++|+++.|+|+++.++|++|++..+..|++|.+++++..+ .++...|++|+.|+|||+++++++ .+.||++.
T Consensus 62 ~vGDiViG~V~~i~~~~~~vdI~~~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~~~-~~~LS~k~ 137 (235)
T PRK04163 62 KVGDLVIGKVTDVTFSGWEVDINSPYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDRTR-DVVLTLKG 137 (235)
T ss_pred CCCCEEEEEEEEEeCceEEEEeCCCceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECCCC-cEEEEEcC
Confidence 5799999999999999999999888999999999987654 677788999999999999999754 59999975
No 252
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.00039 Score=84.30 Aligned_cols=218 Identities=13% Similarity=0.049 Sum_probs=127.5
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHH-HHHHHH---HHHHcCCC
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI-WVAYFN---LENEYGNP 1607 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~l-W~a~l~---le~~~g~~ 1607 (1801)
.+.+.+...|..++..+ .+.....+.++.|+..+.+...+...+.+++.-- +.-...++ -.++.. .+...+
T Consensus 238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~-- 312 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKRE-- 312 (539)
T ss_pred hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHH--
Confidence 34778888999999998 8888899999999999999999988888775321 11111111 111112 222223
Q ss_pred CHHHHHHHHHHHHhcCCCHHH-------------HHH--------------HHHHHHHhCChHHHHHHHHHHHHhcCCCH
Q 000242 1608 PEEAVVKVFQRALQYCDPKKV-------------HLA--------------LLGLYERTEQNKLADELLYKMIKKFKHSC 1660 (1801)
Q Consensus 1608 ~~e~a~~vferAl~~~~~~~v-------------~~~--------------l~~i~~~~g~~~~A~~~~~~~~k~~~~~~ 1660 (1801)
+.+.+...|++++.-.-..++ +.. -++-+.+.|+|..|...|.+|+++.|++.
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 457788888888755432111 111 12233455666666666666666666666
Q ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000242 1661 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1739 (1801)
Q Consensus 1661 ~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le 1739 (1801)
..|-+.+.++.+. .+..|.+-.+.+++..|.. +..|++-|..++-..+++.|...|+.++..+|++..+.-.|..+.
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~--~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNF--IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 6666666666666 6666666666666665555 355555566555555666666666666666666655555555444
Q ss_pred HHcCChHHHHHHHHHHH
Q 000242 1740 IRLGDVDLIRGLFERAI 1756 (1801)
Q Consensus 1740 ~k~gd~e~ar~lferal 1756 (1801)
..+.....-..+++|+.
T Consensus 471 ~a~~~~~~~ee~~~r~~ 487 (539)
T KOG0548|consen 471 EAQRGDETPEETKRRAM 487 (539)
T ss_pred HHhhcCCCHHHHHHhhc
Confidence 43222222334444433
No 253
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=98.11 E-value=3.8e-06 Score=104.27 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=82.8
Q ss_pred CcccCCEEEEEEEEEeCCeE-EEEEccccccchh-----hhhhhhhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEecc
Q 000242 408 KFKVGAELVFRVLGVKSKRI-TVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481 (1801)
Q Consensus 408 ~~~vG~~v~~rVl~v~~~~i-~ls~k~~l~~~~~-----~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~ 481 (1801)
.+++|+.+++.|...+-+|+ ..+.|+.+..... ..+..|.+ +.|+++.|+|.++.++|+||++ +++.||+|.
T Consensus 86 ~~~vGD~ie~~I~~~~fgRia~q~aKq~i~Qkire~ere~i~~eyk~-~~GeIV~G~V~ri~~~giiVDL-ggvea~LP~ 163 (470)
T PRK09202 86 DAEVGDYIEEEIESVDFGRIAAQTAKQVIVQKIREAERERVYEEYKD-RVGEIITGVVKRVERGNIIVDL-GRAEAILPR 163 (470)
T ss_pred cccCCCeEEEEEccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCEEEEE-CCeEEEecH
Confidence 48999999998877754443 3344444333211 12223321 3799999999999999999999 789999999
Q ss_pred cccCCCCCCCCCCCccCCCEEEEEEEEEeCCCC--eEEEEEee
Q 000242 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFMM 522 (1801)
Q Consensus 482 s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~--~l~lS~k~ 522 (1801)
++++ |.+.|++|+.++|.|+++|++++ .+.||.+.
T Consensus 164 sE~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt~ 200 (470)
T PRK09202 164 KEQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRTH 200 (470)
T ss_pred HHcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeCc
Confidence 9995 66789999999999999999877 99999864
No 254
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.11 E-value=2.9e-05 Score=74.42 Aligned_cols=96 Identities=19% Similarity=0.137 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000242 1629 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1707 (1801)
Q Consensus 1629 ~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1707 (1801)
|..++.++...+++++|...|+++++..|....+|..++..+... ++++|.+.|+++++..|... ..|..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHHH
Confidence 444444455555555555555555544444444455555544444 45555555555544444432 344444444444
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 000242 1708 NGVADRGRSMFEGILSEYP 1726 (1801)
Q Consensus 1708 ~g~~e~Ar~lfe~al~~~P 1726 (1801)
.|++++|...|++++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 4444444444444444433
No 255
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]
Probab=98.10 E-value=8e-06 Score=86.06 Aligned_cols=78 Identities=29% Similarity=0.574 Sum_probs=65.0
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCccccc----------C-cccccCCCCEEEEEEEEEecCC---
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----------N-IETIYRAGEKVKVKILKVDKEK--- 1397 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~----------~-~~~~~~~Gd~V~~~Vl~id~e~--- 1397 (1801)
...|++|+|.|.++.+||+||.+++ .+||+|+|++.|+++. + -+..+++||.|+++|+.+....
T Consensus 79 P~~gEVV~GeVv~~~~~G~fV~igp--~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~ 156 (183)
T COG1095 79 PFRGEVVEGEVVEVVEFGAFVRIGP--LDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRP 156 (183)
T ss_pred eccccEEEEEEEEEeecceEEEecc--ccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCcc
Confidence 3468999999999999999999986 9999999999988541 1 2348999999999999987655
Q ss_pred --CeeEEeecccccCC
Q 000242 1398 --RRISLGMKSSYFKN 1411 (1801)
Q Consensus 1398 --~ri~lslK~~~~~~ 1411 (1801)
.+|.++||+.+.+.
T Consensus 157 ~~~~I~lTmrq~~LGk 172 (183)
T COG1095 157 RESKIGLTMRQPGLGK 172 (183)
T ss_pred ccceEEEEeccccCCc
Confidence 57889999876644
No 256
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=3.4e-05 Score=87.42 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=111.6
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000242 1634 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1712 (1801)
Q Consensus 1634 ~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e 1712 (1801)
+=+.+.++|++|...|.+|+...|.++-.|.+.|..|.+. .++.|.+-.+.||..+|.+ .+.|.+++..++.+|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--skay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--SKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--HHHHHHHHHHHHccCcHH
Confidence 4456788999999999999999999999999999999999 9999999999999999876 589999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHhcCCCchhH
Q 000242 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD---LIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1713 ~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e---~ar~lferal~~~~~pk~~ 1765 (1801)
+|.+.|.++|..+|.+...|..+-..+.++++.. .+...|+-+......|+-+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 9999999999999999999998888777776665 5666777766655545544
No 257
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
Probab=98.10 E-value=1.1e-05 Score=88.51 Aligned_cols=78 Identities=26% Similarity=0.559 Sum_probs=66.8
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEe-----c
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVD-----K 1395 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~-----------~~~~~~~~Gd~V~~~Vl~id-----~ 1395 (1801)
..+|+++.|+|++++++|+||+++ .++|++|.+++.+++.. +....|+.||.|+++|.+++ +
T Consensus 79 p~~gEvv~G~V~~v~~~GifV~lg--~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~ 156 (179)
T TIGR00448 79 PELGEIVEGEVIEIVEFGAFVSLG--PFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRP 156 (179)
T ss_pred ccCCCEEEEEEEEEEeeEEEEEeC--CceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCC
Confidence 347999999999999999999996 49999999999866532 23467999999999999998 6
Q ss_pred CCCeeEEeecccccCC
Q 000242 1396 EKRRISLGMKSSYFKN 1411 (1801)
Q Consensus 1396 e~~ri~lslK~~~~~~ 1411 (1801)
+..+|.+|+|..|.+.
T Consensus 157 ~~~~I~lt~k~~~LG~ 172 (179)
T TIGR00448 157 EGSKIGLTMRQPLLGK 172 (179)
T ss_pred CcceEEEEeccCcCCc
Confidence 7789999999988754
No 258
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=98.09 E-value=3.7e-06 Score=104.37 Aligned_cols=119 Identities=17% Similarity=0.250 Sum_probs=90.3
Q ss_pred cccCCCeEeeEEEeecCCCeEEEeccchhhchhhc--CCCccccCC--CCCEEEEEEEEEecCeEEEEECCCeEEEeeCC
Q 000242 583 VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH--PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 658 (1801)
Q Consensus 583 ~~k~G~~i~~vl~~d~~~~~i~ls~K~~l~~~~~~--~~~~~~~~~--~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s 658 (1801)
.+++||.++..+....-++....+.|+.+...+.. --.-|+.++ .|+.++|+|.+++++|+||++ ||+.||+|++
T Consensus 86 ~~~vGD~ie~~I~~~~fgRia~q~aKq~i~Qkire~ere~i~~eyk~~~GeIV~G~V~ri~~~giiVDL-ggvea~LP~s 164 (470)
T PRK09202 86 DAEVGDYIEEEIESVDFGRIAAQTAKQVIVQKIREAERERVYEEYKDRVGEIITGVVKRVERGNIIVDL-GRAEAILPRK 164 (470)
T ss_pred cccCCCeEEEEEccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEecCCEEEEE-CCeEEEecHH
Confidence 57899999843333223444566677776655542 111244555 899999999999999999999 7899999999
Q ss_pred ccCcccccCcccCccCCCEEEEEEEEeeCCCC--eEEEeecccccCCCChhhHHHHHhH
Q 000242 659 KAVDGQRADLSKTYYVGQSVRSNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFLL 715 (1801)
Q Consensus 659 ~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~--ri~lSlk~~~~~~~~~~~~~~~~~~ 715 (1801)
+++ |.+.|++||.|+|+|++|+++++ ++.||.+. +.|+..+|..
T Consensus 165 E~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt~-------p~~l~~Lf~~ 210 (470)
T PRK09202 165 EQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRTH-------PEFLKKLFEQ 210 (470)
T ss_pred HcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeCc-------HHHHHHHHHH
Confidence 985 67889999999999999999877 89998764 4556666664
No 259
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=6.3e-05 Score=76.74 Aligned_cols=102 Identities=10% Similarity=0.107 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHH
Q 000242 1628 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTA 1702 (1801)
Q Consensus 1628 v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~---~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a 1702 (1801)
.++..+..+.+.+++++|...|++++..+|++ ..+++.++..+.+. +++.|..+|++++...|.+. ...++...+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555555555666666666666666555443 34555555555555 56666666666655555532 134555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000242 1703 ILEFKNGVADRGRSMFEGILSEYPKRT 1729 (1801)
Q Consensus 1703 ~le~~~g~~e~Ar~lfe~al~~~P~~~ 1729 (1801)
.++.+.+++++|...|++++..+|++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 555555666666666666666555543
No 260
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.07 E-value=9.3e-05 Score=78.85 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=87.2
Q ss_pred HhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHH
Q 000242 1638 RTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVAD 1712 (1801)
Q Consensus 1638 ~~g~~~~A~~~~~~~~k~~~~~---~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e 1712 (1801)
..++...+...++.+.+.+|.+ ...++.++..++.. ++++|...|+.++...|... ...+++++|.+++..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4677777888888888888776 55667777777777 88888888888887664431 2356777788888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000242 1713 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1756 (1801)
Q Consensus 1713 ~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal 1756 (1801)
+|...++.+ ...+-....|...++++.+.|+.+.|+..|++|+
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888888663 3334455577778888888888888888888764
No 261
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.04 E-value=0.00087 Score=77.69 Aligned_cols=184 Identities=10% Similarity=-0.019 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000242 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1626 (1801)
Q Consensus 1551 s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~---- 1626 (1801)
+...|+..+....+.|++++|.+.|++++...|.....+...+|++++.+ +.+ +.+.|...|+++++..|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy--~~~--~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY--KNA--DLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHhCcCCCchH
Confidence 56667777777788888889988888888888876654555566666655 445 4588888888888888763
Q ss_pred HHHHHHHHHHHHhC------------------ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Q 000242 1627 KVHLALLGLYERTE------------------QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS 1688 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g------------------~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~ 1688 (1801)
.++..++..+...+ ...+|...|++.+++||++.- ..+|...+..+-..
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-------------a~~A~~rl~~l~~~ 173 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-------------TTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-------------HHHHHHHHHHHHHH
Confidence 45555554432221 134677899999999998755 23333322222221
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHH
Q 000242 1689 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQEIRLGDVDLIRGLFERAI 1756 (1801)
Q Consensus 1689 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~d---lw~~y~~le~k~gd~e~ar~lferal 1756 (1801)
+- .--+.-|.++++.|.+..|..-|+.++..+|.... ........+...|..+.|........
T Consensus 174 la-----~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LA-----KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH-----HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11 11236678899999999999999999999998644 55666677888999999888766543
No 262
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.02 E-value=0.00095 Score=93.76 Aligned_cols=265 Identities=11% Similarity=0.014 Sum_probs=179.1
Q ss_pred hccCCCCcHHHHHHHHHcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchh-hHHHHHHHHHHHHHH
Q 000242 1530 LEKDAPRTPDEFERLVRSSPNSS-----FVWIKYMAFMLSMADVEKARSIAERALQTINIREEN-EKLNIWVAYFNLENE 1603 (1801)
Q Consensus 1530 ~~~~~~~a~~~fer~L~~~P~s~-----~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~-e~l~lW~a~l~le~~ 1603 (1801)
..++..++...+++++...|... ..+..++..+...|+++.|+..+++++......... .....+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 34567788888888887544322 244556666788999999999999999754321111 111233344455667
Q ss_pred cCCCCHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHH
Q 000242 1604 YGNPPEEAVVKVFQRALQYCDP---------KKVHLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVWLRRVQR 1669 (1801)
Q Consensus 1604 ~g~~~~e~a~~vferAl~~~~~---------~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~-----~~~~w~~~a~~ 1669 (1801)
.| +.+.|...+++++..... ..++..++.++...|++++|...+.+++..... ....+..++..
T Consensus 544 ~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 544 QG--FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred CC--CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 78 679999999999876432 134556677888889999999999998875421 23445556777
Q ss_pred HHHh-CHHHHHHHHHHHHHhCCCCC-hHHH--HHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHH
Q 000242 1670 LLKQ-QQEGVQAVVQRALLSLPRHK-HIKF--ISQ--TAILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQE 1739 (1801)
Q Consensus 1670 ~~~~-~~~~A~~ll~ralk~~p~~~-~~~~--~~~--~a~le~~~g~~e~Ar~lfe~al~~~P~~~d----lw~~y~~le 1739 (1801)
+... +++.|...+.+++...+... +... ... .+..+...|+.+.|..+++......+.... .+..++..+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 7777 99999999999977543321 1111 111 113334578999999998887653322222 256777788
Q ss_pred HHcCChHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000242 1740 IRLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797 (1801)
Q Consensus 1740 ~k~gd~e~ar~lferal~~----~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~ 1797 (1801)
...|++++|..+|++++.. ......+ .....+.......|+.++|...+.+|++..+
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a-~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLN-RNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 8999999999999999872 1122222 2444555667789999999999999998764
No 263
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.01 E-value=5.2e-05 Score=72.64 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000242 1662 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1740 (1801)
Q Consensus 1662 ~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~ 1740 (1801)
+|+.++..+... ++++|...|+++++..|.. ..+|..++.++...++++.|...|++++...|.+...|..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN--ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 577788888888 8888999999888887765 3778888888888888889999999988888888888888888888
Q ss_pred HcCChHHHHHHHHHHHh
Q 000242 1741 RLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1741 k~gd~e~ar~lferal~ 1757 (1801)
..|+.+.|+..|++++.
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 88888888888888876
No 264
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.00 E-value=8.6e-05 Score=91.31 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=89.8
Q ss_pred HHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000242 1663 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1741 (1801)
Q Consensus 1663 w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k 1741 (1801)
+..-|..++.. ++++|.++|.+|++..|.+ ..+|..+|.++.+.|++++|...|++++..+|.+...|+.++.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~--~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN--AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34446667777 9999999999999999987 58999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCchhH
Q 000242 1742 LGDVDLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1742 ~gd~e~ar~lferal~~~~~pk~~ 1765 (1801)
.|+++.|...|++++. +.|.+.
T Consensus 83 lg~~~eA~~~~~~al~--l~P~~~ 104 (356)
T PLN03088 83 LEEYQTAKAALEKGAS--LAPGDS 104 (356)
T ss_pred hCCHHHHHHHHHHHHH--hCCCCH
Confidence 9999999999999999 555554
No 265
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=97.99 E-value=1.5e-05 Score=106.67 Aligned_cols=76 Identities=32% Similarity=0.649 Sum_probs=65.8
Q ss_pred cCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCC
Q 000242 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1397 (1801)
Q Consensus 1329 ~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~-----------~~~~~~~~~Gd~V~~~Vl~id~e~ 1397 (1801)
+..-++|+++.|+|++|++||+||+|.+.+++||+|+|++.+++. ++....|++||.|+++|.++|.++
T Consensus 622 yl~~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~ 701 (709)
T TIGR02063 622 YMSEKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDT 701 (709)
T ss_pred hhhccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEeccc
Confidence 445578999999999999999999998646999999999986643 223467999999999999999999
Q ss_pred CeeEEee
Q 000242 1398 RRISLGM 1404 (1801)
Q Consensus 1398 ~ri~lsl 1404 (1801)
++|.|++
T Consensus 702 ~~I~~~l 708 (709)
T TIGR02063 702 GKIDFEL 708 (709)
T ss_pred CeEEEEE
Confidence 9999986
No 266
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.99 E-value=0.0001 Score=90.09 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=59.0
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000242 1632 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710 (1801)
Q Consensus 1632 l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~ 1710 (1801)
++.++...++++.|.++|+++.+.+| +++..++..++.. +..+|.+++.++++..|.. ..++...|+++.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCC
Confidence 33444444455555555555554432 2444444444444 4555555555555554444 3455555555555555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 000242 1711 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753 (1801)
Q Consensus 1711 ~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lfe 1753 (1801)
++.|..+.++++...|.....|..++..|++.|+++.|...++
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 5555555555555555555555555555555555555544443
No 267
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.99 E-value=9.8e-05 Score=75.33 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 000242 1660 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSI 1734 (1801)
Q Consensus 1660 ~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~---~dlw~~ 1734 (1801)
+++|+..+..+.+. ++++|...|+++++..|.+.. ..+++.+|..+++.|++++|..+|+.++..+|.+ ..+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 46788899999999 999999999999999887532 4688999999999999999999999999999885 568999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000242 1735 YLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1735 y~~le~k~gd~e~ar~lferal~~~~~pk~~ 1765 (1801)
++.++.+.|+++.|...|++++. ..|+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK--RYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH--HCcCCh
Confidence 99999999999999999999998 556555
No 268
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=97.98 E-value=2.1e-05 Score=75.90 Aligned_cols=74 Identities=19% Similarity=0.385 Sum_probs=64.8
Q ss_pred CCCCcEEEEEEEEEeeceEEEEE--------eCCceeEEeeccccCccccc--CcccccCCCCEEEEEEEEEecCCCeeE
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITI--------ENTNLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRIS 1401 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l--------~~~~v~gl~~~sel~~~~~~--~~~~~~~~Gd~V~~~Vl~id~e~~ri~ 1401 (1801)
.++|++|-|+|+++....++|+| . +...|.+|+|++...+.+ ++.+.|++||.|+|+|++++ +.+.+.
T Consensus 4 P~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~-~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~-~~~~~~ 81 (92)
T cd05791 4 PKVGSIVIARVTRINPRFAKVDILCVGGRPLK-ESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLG-DASSYY 81 (92)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEEEEecCeecC-CCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcC-CCCCcE
Confidence 47999999999999999999999 4 368999999999887776 68899999999999999997 346788
Q ss_pred Eeeccc
Q 000242 1402 LGMKSS 1407 (1801)
Q Consensus 1402 lslK~~ 1407 (1801)
||++..
T Consensus 82 Lst~~~ 87 (92)
T cd05791 82 LSTAEN 87 (92)
T ss_pred EEecCC
Confidence 998764
No 269
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.97 E-value=0.00082 Score=75.95 Aligned_cols=177 Identities=15% Similarity=0.138 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000242 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1626 (1801)
Q Consensus 1551 s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~---- 1626 (1801)
....++..+..+++.|++++|...|++.....|.+.-.....+|+++..+ ..+ +.+.|...|++.++..|..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y--~~~--~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY--KQG--DYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH--HTT---HHHHHHHHHHHHHH-TT-TTHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHHCCCCcchh
Confidence 34556667777788888888888888888887776655555555555443 555 4577888888888777763
Q ss_pred HHHHHHHHHHH-----------HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCCCChH
Q 000242 1627 KVHLALLGLYE-----------RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1695 (1801)
Q Consensus 1627 ~v~~~l~~i~~-----------~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p~~~~~ 1695 (1801)
.+++.++..+. ......+|...|+..+.+||++.- ..+|...+..+-..+ .
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y-------------~~~A~~~l~~l~~~l-----a 141 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY-------------AEEAKKRLAELRNRL-----A 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT-------------HHHHHHHHHHHHHHH-----H
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH-------------HHHHHHHHHHHHHHH-----H
Confidence 34444444322 223345778888888888877654 333333333322221 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHH
Q 000242 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQEIRLGDVDLIR 1749 (1801)
Q Consensus 1696 ~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~d---lw~~y~~le~k~gd~e~ar 1749 (1801)
.--+..|.++++.|.+..|..-|+.+++.+|.... .+...+..+.++|..+.+.
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 12344678899999999999999999999999754 5677777778888877544
No 270
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.95 E-value=0.00011 Score=93.61 Aligned_cols=186 Identities=13% Similarity=0.062 Sum_probs=160.5
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000242 1533 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1612 (1801)
Q Consensus 1533 ~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a 1612 (1801)
+...+-..|=++++.+|+-...|..++.+|....+.-+|+..|++|.+.-+.. ...|.+....+.... +-+.|
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatd-----aeaaaa~adtyae~~--~we~a 545 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATD-----AEAAAASADTYAEES--TWEEA 545 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-----hhhHHHHHHHhhccc--cHHHH
Confidence 35566677888889999999999999999999999999999999999765542 347888888888777 44888
Q ss_pred HHHHHHHHhcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHh
Q 000242 1613 VKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1688 (1801)
Q Consensus 1613 ~~vferAl~~~~~~---~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~ 1688 (1801)
..+.-++-+..+.. .-|...+-+|...++.-.|...|+.+++..|.+...|..+++.|.+. ++..|.+.|.+|...
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 88877777776654 78999888999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000242 1689 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1727 (1801)
Q Consensus 1689 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~ 1727 (1801)
.|.+. -..+.-|-++...|.+..|...++.++....+
T Consensus 626 rP~s~--y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 626 RPLSK--YGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred CcHhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 98874 45566677889999999999999999877654
No 271
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00021 Score=81.21 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=95.1
Q ss_pred HHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 000242 1666 RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1744 (1801)
Q Consensus 1666 ~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd 1744 (1801)
-+.-+++. +|++|...|.+||+..|.+. -+|.+-|..|.++|.++.|..-.+.+|..+|.....|..+...+..+|+
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 35556777 99999999999999999995 7899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHHcC
Q 000242 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEY-EKSVG 1780 (1801)
Q Consensus 1745 ~e~ar~lferal~~~~~pk~~k~lw~~yl~~-E~~~G 1780 (1801)
++.|...|.+||. +.|.+. .|+.=+.. |.+.+
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne--~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNE--SYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcH--HHHHHHHHHHHHhc
Confidence 9999999999999 888887 44444443 44433
No 272
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.93 E-value=0.00032 Score=73.54 Aligned_cols=97 Identities=9% Similarity=-0.111 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000242 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1705 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le 1705 (1801)
+.-+.++..+.+.|++++|..+|+.++...|.+...|+.++-.+... ++.+|...|.+|+...|.+ +..+...|..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--p~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--PQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--chHHHHHHHHH
Confidence 45566677788899999999999999999899999999999988888 9999999999999988876 47888888999
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 000242 1706 FKNGVADRGRSMFEGILSEY 1725 (1801)
Q Consensus 1706 ~~~g~~e~Ar~lfe~al~~~ 1725 (1801)
+..|+.+.|+..|+.++...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999988765
No 273
>PRK11642 exoribonuclease R; Provisional
Probab=97.87 E-value=3.1e-05 Score=103.18 Aligned_cols=75 Identities=31% Similarity=0.603 Sum_probs=65.3
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccc--c---------CcccccCCCCEEEEEEEEEecCCCe
Q 000242 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--D---------NIETIYRAGEKVKVKILKVDKEKRR 1399 (1801)
Q Consensus 1331 ~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~--~---------~~~~~~~~Gd~V~~~Vl~id~e~~r 1399 (1801)
.-++|+++.|+|++|++||+||+|.+.+++|++|++++.+++. . +....|++||.|+++|.++|.++++
T Consensus 640 ~~~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rk 719 (813)
T PRK11642 640 LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERK 719 (813)
T ss_pred hccCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCe
Confidence 3378999999999999999999998756999999999987532 1 2346799999999999999999999
Q ss_pred eEEeec
Q 000242 1400 ISLGMK 1405 (1801)
Q Consensus 1400 i~lslK 1405 (1801)
|.|++-
T Consensus 720 I~f~l~ 725 (813)
T PRK11642 720 IDFSLI 725 (813)
T ss_pred EEEEEe
Confidence 999984
No 274
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
Probab=97.87 E-value=4.4e-05 Score=83.93 Aligned_cols=74 Identities=30% Similarity=0.455 Sum_probs=63.6
Q ss_pred CCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCccccc-C----------cccCccCCCEEEEEEEEee-----CCCC
Q 000242 627 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA-D----------LSKTYYVGQSVRSNILDVN-----SETG 690 (1801)
Q Consensus 627 ~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~-~----------~~~~~~~Gq~V~~~V~~vd-----~~~~ 690 (1801)
.|+++.|.|++++++|+||++ +.+.|++|.+++.+++.. + ....|++||+|+++|.++| ++..
T Consensus 81 ~gEvv~G~V~~v~~~GifV~l-g~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~~~ 159 (179)
T TIGR00448 81 LGEIVEGEVIEIVEFGAFVSL-GPFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRPEGS 159 (179)
T ss_pred CCCEEEEEEEEEEeeEEEEEe-CCceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCCCcc
Confidence 699999999999999999999 679999999998865432 2 2356999999999999998 6788
Q ss_pred eEEEeeccccc
Q 000242 691 RITLSLKQSCC 701 (1801)
Q Consensus 691 ri~lSlk~~~~ 701 (1801)
++.+|+|+.-.
T Consensus 160 ~I~lt~k~~~L 170 (179)
T TIGR00448 160 KIGLTMRQPLL 170 (179)
T ss_pred eEEEEeccCcC
Confidence 99999997644
No 275
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.87 E-value=0.00019 Score=75.19 Aligned_cols=99 Identities=5% Similarity=-0.080 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000242 1657 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1735 (1801)
Q Consensus 1657 ~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y 1735 (1801)
++..+..+.|+..+... ++++|..+|+-.+...|.+ ...|+.+|..+...|++++|...|.+++...|+++......
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~--~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS--FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 35677788888888888 9999999999999999887 48999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 000242 1736 LDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1736 ~~le~k~gd~e~ar~lferal~ 1757 (1801)
+..++..|+.+.|+..|+.|+.
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999998
No 276
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=97.83 E-value=1.5e-05 Score=94.92 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=68.6
Q ss_pred ccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000242 623 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 697 (1801)
Q Consensus 623 ~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk 697 (1801)
.++..|.+++++|+++.++|+||+|+++..||+|.|+++.+.+..|++.+.+||.+.++.+..|+..+.+++|-+
T Consensus 664 ~~l~~g~vy~~tIt~~rd~G~~V~l~p~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~~~ls~ra 738 (760)
T KOG1067|consen 664 QDLEFGGVYTATITEIRDTGVMVELYPMQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGGIMLSSRA 738 (760)
T ss_pred cceEeeeEEEEEEeeecccceEEEecCCchhhccchhcccccccChHHHHhhcceeEEEEEeecCccceeehhhh
Confidence 457789999999999999999999999999999999999999999999999999999999999987776666543
No 277
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.83 E-value=0.00065 Score=86.97 Aligned_cols=112 Identities=10% Similarity=0.036 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000242 1675 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1754 (1801)
Q Consensus 1675 ~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lfer 1754 (1801)
...+.+..++++..........++..+|......|++++|...|++|+...| +...|..++.++...|++++|...|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455566666665422222246777777777778899999999999999998 477888888888999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000242 1755 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1792 (1801)
Q Consensus 1755 al~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rA 1792 (1801)
|+. +.|.....+|..-+-| +-+.+.+.....++
T Consensus 479 A~~--L~P~~pt~~~~~~~~f---~~~~~~~~~~~~~~ 511 (517)
T PRK10153 479 AFN--LRPGENTLYWIENLVF---QTSVETVVPYLYRF 511 (517)
T ss_pred HHh--cCCCCchHHHHHhccc---cccHHHHHHHHHhc
Confidence 988 6666554455554444 34555555555444
No 278
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.81 E-value=0.00025 Score=77.63 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHH
Q 000242 1642 NKLADELLYKMIKKFK--HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSM 1717 (1801)
Q Consensus 1642 ~~~A~~~~~~~~k~~~--~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~l 1717 (1801)
+..+...+.+.++..+ .....|+.++..+... ++++|...|++|+...|.+. ...+|..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444444443332 2355667777777666 77777777777776655432 234677777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH-------HcCChHHHHHHHHHHHh
Q 000242 1718 FEGILSEYPKRTDLWSIYLDQEI-------RLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1718 fe~al~~~P~~~dlw~~y~~le~-------k~gd~e~ar~lferal~ 1757 (1801)
|++++...|.....|...+.++. ..|+++.|...|++++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 77777777777777777666666 45555555555555543
No 279
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.81 E-value=0.00051 Score=73.17 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=106.5
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHH
Q 000242 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMF 1718 (1801)
Q Consensus 1641 ~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~lf 1718 (1801)
+.++|...|+.++... .. +...+...+++..+.+|... ....++..|..++..|++++|...|
T Consensus 7 ~~~~a~~~y~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l 71 (145)
T PF09976_consen 7 QAEQASALYEQALQAL---------------QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAAL 71 (145)
T ss_pred HHHHHHHHHHHHHHHH---------------HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455666666666432 34 78889999999999998873 3467888889999999999999999
Q ss_pred HHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1719 EGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1719 e~al~~~P~~---~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
+.++...|+. ...+..++.+++..|+++.|...++.+-. ++-.. ..|....+.....|+.++|+..|++|+
T Consensus 72 ~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~-~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 72 EKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKA-LAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHH-HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999988664 33688889999999999999999977433 22233 467777888999999999999999985
No 280
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.81 E-value=0.0041 Score=87.42 Aligned_cols=237 Identities=13% Similarity=0.075 Sum_probs=161.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHH
Q 000242 1558 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHL 1630 (1801)
Q Consensus 1558 y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-------~v~~ 1630 (1801)
.+..+...|+++.|...+++++...+..........+..+.......| +.+.|...|++|+...... ..+.
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 344556889999999999999976553221112223334444556778 6699999999999764321 4456
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCC---ChHHHH
Q 000242 1631 ALLGLYERTEQNKLADELLYKMIKKFKH--------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH---KHIKFI 1698 (1801)
Q Consensus 1631 ~l~~i~~~~g~~~~A~~~~~~~~k~~~~--------~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~---~~~~~~ 1698 (1801)
.++.++...|+++.|...+++++..... ..-++..++..+... ++++|...+++++...... .....+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 6778899999999999999998875321 122344566777777 9999999999998764321 234566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHH-----HHHHHHHcCChHHHHHHHHHHHhcCCCchhH--HHHH
Q 000242 1699 SQTAILEFKNGVADRGRSMFEGILSEYPKRT--DLWSI-----YLDQEIRLGDVDLIRGLFERAISLSLPPKKM--KFLF 1769 (1801)
Q Consensus 1699 ~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~--dlw~~-----y~~le~k~gd~e~ar~lferal~~~~~pk~~--k~lw 1769 (1801)
...+.++...|+++.|...+++++...+... ..|.. ....+...|+.+.|+.++.+.... ...... ...+
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~ 694 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHH
Confidence 6678888999999999999999977544321 11211 123334579999999998886651 111111 0123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000242 1770 KKYLEYEKSVGEEERIEYVKQKAMEYVE 1797 (1801)
Q Consensus 1770 ~~yl~~E~~~G~~e~a~~v~~rAl~~v~ 1797 (1801)
..+.......|++++|...+++|++..+
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~ 722 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENAR 722 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4445556778999999999999998754
No 281
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=97.80 E-value=6e-05 Score=72.76 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=65.6
Q ss_pred CCCCEEEEEEEEEeeceEEEEe--------CCCcEEEEEcccCCCcccC--CccccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000242 1243 SPNMIVQGYVKNVTSKGCFIML--------SRKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1312 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~~G~fV~l--------~~~v~g~v~~s~lsd~~~~--~~~~~f~~G~~V~~~Vl~vd~~~~ri~lS 1312 (1801)
++|++|.|+|++++...++|+| .....|.+|++++...+.. +..+.|++|+.|+|+|++++. .+.+.||
T Consensus 5 ~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~~-~~~~~Ls 83 (92)
T cd05791 5 KVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLGD-ASSYYLS 83 (92)
T ss_pred CCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcCC-CCCcEEE
Confidence 7899999999999999999999 8888999999999988776 788999999999999999984 4678999
Q ss_pred EecC
Q 000242 1313 LKTS 1316 (1801)
Q Consensus 1313 lk~~ 1316 (1801)
++..
T Consensus 84 t~~~ 87 (92)
T cd05791 84 TAEN 87 (92)
T ss_pred ecCC
Confidence 8753
No 282
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.80 E-value=5.1e-05 Score=68.52 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 000242 1700 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1764 (1801)
Q Consensus 1700 ~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~ 1764 (1801)
..|..+++.|++++|+..|+++++.+|.+.++|..++.++...|++++|+..|++++. ..|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 4577788888888888888888888888888888888888888888888888888887 55543
No 283
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.0027 Score=79.34 Aligned_cols=226 Identities=12% Similarity=0.069 Sum_probs=117.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000242 1557 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1636 (1801)
Q Consensus 1557 ~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~ 1636 (1801)
+.+.+.+++|.+++|..+|+++-+- . +. -.|+...|.+ ++|.++.+.- ..+.-++.|++|+..+
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~-D---------Ll---NKlyQs~g~w--~eA~eiAE~~-DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY-D---------LL---NKLYQSQGMW--SEAFEIAETK-DRIHLRNTYYNYAKYL 868 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-H---------HH---HHHHHhcccH--HHHHHHHhhc-cceehhhhHHHHHHHH
Confidence 4445556677777777777776531 1 11 1233333422 3333332211 1111235666666666
Q ss_pred HHhCChHHHHHHHHH----------HHHhcC----------CCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC----
Q 000242 1637 ERTEQNKLADELLYK----------MIKKFK----------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR---- 1691 (1801)
Q Consensus 1637 ~~~g~~~~A~~~~~~----------~~k~~~----------~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~---- 1691 (1801)
+..++.+.|++.|++ |++.+| ..+++|.=+++++... ..+.|..+|..|-..+.-
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~ 948 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIK 948 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeE
Confidence 666666666666665 333332 3455566666666665 666666666654332210
Q ss_pred ---------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCC---CCHHHHHHH-----------H
Q 000242 1692 ---------------HKHIKFISQTAILEFKNGVADRGRSMFEGIL------SEYP---KRTDLWSIY-----------L 1736 (1801)
Q Consensus 1692 ---------------~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al------~~~P---~~~dlw~~y-----------~ 1736 (1801)
.....+-+.+|+.|...|+.-+|...|-+|- +... -...+|+.- +
T Consensus 949 C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred eeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHH
Confidence 1112455556666666666666666555541 1111 111233211 2
Q ss_pred HHHHHcC-ChHHHHHHHHHH---------------------HhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1737 DQEIRLG-DVDLIRGLFERA---------------------ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1737 ~le~k~g-d~e~ar~lfera---------------------l~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
.+|...| ...+|..+|.+| |..++.|..--.+..+..+|-..+.++++|..+.-.|.+
T Consensus 1029 rYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1029 RYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2222222 445555544433 112444333225889999998889999999988888877
Q ss_pred HHHh
Q 000242 1795 YVES 1798 (1801)
Q Consensus 1795 ~v~~ 1798 (1801)
|-.+
T Consensus 1109 ~~~A 1112 (1416)
T KOG3617|consen 1109 FSGA 1112 (1416)
T ss_pred HHHH
Confidence 7654
No 284
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional
Probab=97.78 E-value=9.1e-05 Score=82.27 Aligned_cols=78 Identities=24% Similarity=0.527 Sum_probs=65.7
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEecCCC--
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKR-- 1398 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~-----------~~~~~~~~Gd~V~~~Vl~id~e~~-- 1398 (1801)
..+|+++.|+|+++.++|+||+++ .++|++|.+++.+++.. +....|+.||.|+++|.+++.+.+
T Consensus 79 P~~GEVv~g~V~~v~~~Gi~V~lg--~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~ 156 (187)
T PRK08563 79 PELQEVVEGEVVEVVEFGAFVRIG--PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRP 156 (187)
T ss_pred ccCCCEEEEEEEEEEccEEEEEEe--CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 457999999999999999999997 49999999999876432 345679999999999999997653
Q ss_pred ---eeEEeecccccCC
Q 000242 1399 ---RISLGMKSSYFKN 1411 (1801)
Q Consensus 1399 ---ri~lslK~~~~~~ 1411 (1801)
+|.+|+|..+.+.
T Consensus 157 ~~~~I~ls~~~~~LG~ 172 (187)
T PRK08563 157 RGSKIGLTMRQPGLGK 172 (187)
T ss_pred CCCEEEEEecCCCCCc
Confidence 8999999877643
No 285
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.00052 Score=81.88 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHhCHHHHHHHH
Q 000242 1609 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQQQEGVQAVV 1682 (1801)
Q Consensus 1609 ~e~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~------~~~~~w~~~a~~~~~~~~~~A~~ll 1682 (1801)
.+.|...|++| ++.|...+++++|.+.|.++...+. .....|...+..+.+.++++|..+|
T Consensus 31 ~e~Aa~~y~~A-------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~ 97 (282)
T PF14938_consen 31 YEEAADLYEKA-------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHH-------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHH-------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 35555566555 4566666666666666666654331 1233344444433222677777777
Q ss_pred HHHHHhCCCCC----hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHH
Q 000242 1683 QRALLSLPRHK----HIKFISQTAILEFKN-GVADRGRSMFEGILSEYPK--R----TDLWSIYLDQEIRLGDVDLIRGL 1751 (1801)
Q Consensus 1683 ~ralk~~p~~~----~~~~~~~~a~le~~~-g~~e~Ar~lfe~al~~~P~--~----~dlw~~y~~le~k~gd~e~ar~l 1751 (1801)
++|+..+-... -..++...|.++.+. |++++|...|++|+..+.. + .......+.++.+.|++++|..+
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~ 177 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI 177 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 77776542221 135667777777766 7788888888887765422 1 23566777777777888888888
Q ss_pred HHHHHhcCC----CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1752 FERAISLSL----PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1752 feral~~~~----~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
|+++....+ ..-..+..|..-+-.....||.-.|+..+++..
T Consensus 178 ~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 178 YEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 877776211 112233344333444445677777777766653
No 286
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=97.78 E-value=5.8e-05 Score=99.61 Aligned_cols=74 Identities=31% Similarity=0.595 Sum_probs=64.4
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCCCe
Q 000242 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEKRR 1399 (1801)
Q Consensus 1331 ~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~-----------~~~~~~~~~Gd~V~~~Vl~id~e~~r 1399 (1801)
.-++|+++.|+|+++++||+||+|.+.+++|++|++++.+++. ++....|++||.|+++|.++|.++++
T Consensus 569 ~~~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~ 648 (654)
T TIGR00358 569 LDKVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRS 648 (654)
T ss_pred hhCCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCe
Confidence 4468999999999999999999998558999999999987641 22346899999999999999999999
Q ss_pred eEEee
Q 000242 1400 ISLGM 1404 (1801)
Q Consensus 1400 i~lsl 1404 (1801)
|.+++
T Consensus 649 I~f~l 653 (654)
T TIGR00358 649 IIFEL 653 (654)
T ss_pred EEEEE
Confidence 99875
No 287
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.78 E-value=0.00036 Score=81.40 Aligned_cols=96 Identities=11% Similarity=0.216 Sum_probs=75.8
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHcC
Q 000242 1635 LYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-KHIKFISQTAILEFKNG 1709 (1801)
Q Consensus 1635 i~~~~g~~~~A~~~~~~~~k~~~~~---~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~-~~~~~~~~~a~le~~~g 1709 (1801)
++.+.+++++|...|+..++.||++ +.+|+.+|..++.. ++++|...|+++++.+|.+ ....+|+..|..+...|
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 4455688888888888888888876 57888888888888 8888888888888888775 33577788888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHH
Q 000242 1710 VADRGRSMFEGILSEYPKRTD 1730 (1801)
Q Consensus 1710 ~~e~Ar~lfe~al~~~P~~~d 1730 (1801)
+++.|+.+|+++++.+|++..
T Consensus 232 ~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCHH
Confidence 888888888888888887654
No 288
>PRK11906 transcriptional regulator; Provisional
Probab=97.78 E-value=0.00083 Score=81.57 Aligned_cols=175 Identities=10% Similarity=0.077 Sum_probs=104.3
Q ss_pred HcCCCCH---HHH--HHHHHHHHh--cC---CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC-----CHH
Q 000242 1546 RSSPNSS---FVW--IKYMAFMLS--MA---DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-----PEE 1610 (1801)
Q Consensus 1546 ~~~P~s~---~~W--~~y~~~~~~--~~---e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~-----~~e 1610 (1801)
...|.+. .+| -.|++.... .+ ..++|..+|.||+.+.+...++-....|.++..+...+..+ +..
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~ 321 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQ 321 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 4446666 777 555554432 22 56778889999994444333444556677777665522111 245
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHh
Q 000242 1611 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1688 (1801)
Q Consensus 1611 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~ 1688 (1801)
+|.+..+||++..+.+ .....++.++...++++.|..+|+++....|+...+|+.++-.+.-. +.++|++.+++|++.
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 6666777777766654 55555555555566666777777777766666666666666666666 666666666666666
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000242 1689 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1721 (1801)
Q Consensus 1689 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~a 1721 (1801)
.|.+....+...+..+|+.++ .+.|..+|-+-
T Consensus 402 sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 402 EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 666544444444444444332 44444444443
No 289
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.003 Score=76.90 Aligned_cols=221 Identities=15% Similarity=0.093 Sum_probs=136.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--------HHHHH
Q 000242 1560 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--------KVHLA 1631 (1801)
Q Consensus 1560 ~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~--------~v~~~ 1631 (1801)
+......+++.|.+.|..++..- .+ ..........+...+ ....+......|++..-.. .....
T Consensus 232 naaykkk~f~~a~q~y~~a~el~--~~----it~~~n~aA~~~e~~--~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA--TD----ITYLNNIAAVYLERG--KYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh--hh----hHHHHHHHHHHHhcc--HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444566777777777777543 11 222333334444445 2355555555555544321 22333
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCC--C----------HHH--------------HHHHHHHHHHh-CHHHHHHHHHH
Q 000242 1632 LLGLYERTEQNKLADELLYKMIKKFKH--S----------CKV--------------WLRRVQRLLKQ-QQEGVQAVVQR 1684 (1801)
Q Consensus 1632 l~~i~~~~g~~~~A~~~~~~~~k~~~~--~----------~~~--------------w~~~a~~~~~~-~~~~A~~ll~r 1684 (1801)
+++.|...+.++.|...|++++..+.. . .+. -..-+.-+++. ++..|...|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 455777778899999999998876642 0 001 11123333444 67788888888
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 000242 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1764 (1801)
Q Consensus 1685 alk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~ 1764 (1801)
|++..|.+. .+|.+.|..+.+.|.+.+|..-.+.+++.+|+..-.|+.-+..+....+++.|...|..++. ..|++
T Consensus 384 AIkr~P~Da--~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~ 459 (539)
T KOG0548|consen 384 AIKRDPEDA--RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSN 459 (539)
T ss_pred HHhcCCchh--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchh
Confidence 888887773 78888888888888888888888888888888888888888888778888888888888887 55666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1765 MKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1765 ~k~lw~~yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
. .+-..|...-......+.-..+++|++
T Consensus 460 ~-e~~~~~~rc~~a~~~~~~~ee~~~r~~ 487 (539)
T KOG0548|consen 460 A-EAIDGYRRCVEAQRGDETPEETKRRAM 487 (539)
T ss_pred H-HHHHHHHHHHHHhhcCCCHHHHHHhhc
Confidence 5 343334333222111222334555543
No 290
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00057 Score=78.47 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-cC--CHHHHHHH
Q 000242 1642 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NG--VADRGRSM 1717 (1801)
Q Consensus 1642 ~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~-~g--~~e~Ar~l 1717 (1801)
.++...-.+.-+..+|++.+-|..++..++.+ ++..|...|.+|++..|++ ++++..||..++. .| +..+|+.+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44555666777888999999999999999999 9999999999999999998 5899999997663 33 57899999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000242 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1718 fe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~ 1765 (1801)
|+++++.+|.+....+.++.-++..|++.+|...++..+. .+||+..
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~-~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD-LLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCCCc
Confidence 9999999999999999999999999999999999999998 4555433
No 291
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.011 Score=72.70 Aligned_cols=243 Identities=14% Similarity=0.147 Sum_probs=153.4
Q ss_pred cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----cCCc----chhh-HH-HHHHHHHHHHHHcCCCCHHHHHHH
Q 000242 1547 SSPN-SSFVWIKYMAFMLSMADVEKARSIAERALQT----INIR----EENE-KL-NIWVAYFNLENEYGNPPEEAVVKV 1615 (1801)
Q Consensus 1547 ~~P~-s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~----i~~~----ee~e-~l-~lW~a~l~le~~~g~~~~e~a~~v 1615 (1801)
..|. +.++.++.+-.++..|++.+|.++.++|++. +... ++.+ .+ .+..+++..+.+.| ..++|..+
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G--qt~ea~~i 246 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG--QTAEASSI 246 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc--chHHHHHH
Confidence 3454 6788889999999999999999999999542 2111 1111 12 34556666667888 56889999
Q ss_pred HHHHHhcCCCHHHHHHHH------------------------------H--------------------HHHHhCChHHH
Q 000242 1616 FQRALQYCDPKKVHLALL------------------------------G--------------------LYERTEQNKLA 1645 (1801)
Q Consensus 1616 ferAl~~~~~~~v~~~l~------------------------------~--------------------i~~~~g~~~~A 1645 (1801)
|...++.++...-..+.+ . +..-.++.+.+
T Consensus 247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999998775321111111 1 11112222222
Q ss_pred HHHHHHHHHhcCCCHHHHH-HH--HHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000242 1646 DELLYKMIKKFKHSCKVWL-RR--VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1721 (1801)
Q Consensus 1646 ~~~~~~~~k~~~~~~~~w~-~~--a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~a 1721 (1801)
+++..+.- +..+...+ .+ .....+. .+.+|..++....+.+|.+. ..+.+..|++...+|+++.|..+++..
T Consensus 327 r~~~a~lp---~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s-~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 327 RELSASLP---GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS-KVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHhCC---ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22211111 12212111 11 1111122 46777788888888887763 468888899999999999999999955
Q ss_pred HHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000242 1722 LSEY-------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL---SLPP-KKMKFLFKKYLEYEKSVGEEERIEYVKQ 1790 (1801)
Q Consensus 1722 l~~~-------P~~~dlw~~y~~le~k~gd~e~ar~lferal~~---~~~p-k~~k~lw~~yl~~E~~~G~~e~a~~v~~ 1790 (1801)
+.+. -..+.+-.....++.+.++.+.|-+++..|+.- ..+. .....+|.....|+.++|+.+++..+++
T Consensus 403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 4221 123445566667788889999999999999871 1111 1233578888999999999999999998
Q ss_pred HHHHH
Q 000242 1791 KAMEY 1795 (1801)
Q Consensus 1791 rAl~~ 1795 (1801)
.-.+|
T Consensus 483 el~k~ 487 (652)
T KOG2376|consen 483 ELVKF 487 (652)
T ss_pred HHHHh
Confidence 87764
No 292
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.71 E-value=5.3e-05 Score=84.79 Aligned_cols=92 Identities=18% Similarity=0.317 Sum_probs=45.4
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcC
Q 000242 1681 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI-RLGDVDLIRGLFERAISLS 1759 (1801)
Q Consensus 1681 ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~-k~gd~e~ar~lferal~~~ 1759 (1801)
+|.|+...+|.. +++|..|+....+.+.+.....+|..+++.+|.+.|+|...++++. -.++++.+|++|.++++
T Consensus 95 ~~~R~tnkff~D--~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR-- 170 (435)
T COG5191 95 ELYRSTNKFFND--PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR-- 170 (435)
T ss_pred eeehhhhcCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc--
Confidence 344444444443 3455555555555555555555555555555555555554444442 34455555555555554
Q ss_pred CCchhHHHHHHHHHHHHH
Q 000242 1760 LPPKKMKFLFKKYLEYEK 1777 (1801)
Q Consensus 1760 ~~pk~~k~lw~~yl~~E~ 1777 (1801)
++|+.+ .+|..|..||-
T Consensus 171 ~N~~~p-~iw~eyfr~El 187 (435)
T COG5191 171 MNSRSP-RIWIEYFRMEL 187 (435)
T ss_pred cCCCCc-hHHHHHHHHHH
Confidence 444444 35555555544
No 293
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.00091 Score=73.55 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=48.2
Q ss_pred HHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000242 1663 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1740 (1801)
Q Consensus 1663 w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~ 1740 (1801)
|+.++..+... ++++|..+|+++++..|... ...+|..+|.++...|++++|...|++++...|.+...|..++.++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444444444 44444444444444433221 12344555555555555555555555555555555555555554444
Q ss_pred HcCC--------------hHHHHHHHHHHHhcCCCchh
Q 000242 1741 RLGD--------------VDLIRGLFERAISLSLPPKK 1764 (1801)
Q Consensus 1741 k~gd--------------~e~ar~lferal~~~~~pk~ 1764 (1801)
..|+ +++|..+|++++. +.|.+
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~ 153 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN 153 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh
Confidence 4443 3455666666665 44444
No 294
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=97.69 E-value=5.6e-05 Score=90.38 Aligned_cols=120 Identities=18% Similarity=0.355 Sum_probs=86.6
Q ss_pred cccccCCCeEeeEEEeecCCCeEEEeccchhhch-----hhcCCCccccCCCCCEEEEEEEEEecCe-EEEEECCCeEEE
Q 000242 581 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS-----AQQLPSDASHIHPNSVVHGYVCNIIETG-CFVRFLGRLTGF 654 (1801)
Q Consensus 581 ~~~~k~G~~i~~vl~~d~~~~~i~ls~K~~l~~~-----~~~~~~~~~~~~~G~~~~G~V~~i~~~G-~fV~f~~~~~Gl 654 (1801)
...+++||.++..+..+.-++....++|+.+... .+.+...|.+ +.|+.++|+|.++.+.| +||.+ |++.||
T Consensus 81 d~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea~ 158 (341)
T TIGR01953 81 DPDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEGI 158 (341)
T ss_pred ccccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEEE
Confidence 4568899999854444334444556666655222 1123333333 59999999999999988 79999 799999
Q ss_pred eeCCccCcccccCcccCccCCCEEEEEEEEeeCCC--CeEEEeecccccCCCChhhHHHHHhH
Q 000242 655 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSLKQSCCSSTDASFMQEHFLL 715 (1801)
Q Consensus 655 v~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~--~ri~lSlk~~~~~~~~~~~~~~~~~~ 715 (1801)
+|++++. |.+.|++||+++|.|++++.+. ..+.||.+. +.|+..+|..
T Consensus 159 LP~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~-------~~~v~~Lfe~ 208 (341)
T TIGR01953 159 LPKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTH-------PEFVKELLKL 208 (341)
T ss_pred ecHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCc-------HHHHHHHHHH
Confidence 9999986 4567999999999999999654 568888764 3456666653
No 295
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.0033 Score=78.55 Aligned_cols=224 Identities=21% Similarity=0.163 Sum_probs=149.9
Q ss_pred CCHHHHHHHHHHHHhc----------CCHHHHHH--HHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000242 1550 NSSFVWIKYMAFMLSM----------ADVEKARS--IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1617 (1801)
Q Consensus 1550 ~s~~~W~~y~~~~~~~----------~e~d~Ar~--~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vfe 1617 (1801)
.+-..|-+.+...... |.+..||. ..+||.+. + ++ ...-.+ -+..++| -+|.|..+|+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~-~--~e---~eakvA--vLAieLg--MlEeA~~lYr 824 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN-G--EE---DEAKVA--VLAIELG--MLEEALILYR 824 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC-C--cc---hhhHHH--HHHHHHh--hHHHHHHHHH
Confidence 4556788888776544 44444442 22334321 1 11 123333 4445566 5699999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHH----------HH
Q 000242 1618 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR----------AL 1686 (1801)
Q Consensus 1618 rAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~r----------al 1686 (1801)
+.-+ |-.+-.+|...|.+++|.++-+.--+. .-...|++||.++... +.+.|.+.|++ +|
T Consensus 825 ~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL 895 (1416)
T KOG3617|consen 825 QCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML 895 (1416)
T ss_pred HHHH-------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH
Confidence 9854 344455788889899987776543332 3567899999999988 99999999987 45
Q ss_pred HhCCC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHhCCCCHHHHHHHHH
Q 000242 1687 LSLPR--------HKHIKFISQTAILEFKNGVADRGRSMFEGI---------------------LSEYPKRTDLWSIYLD 1737 (1801)
Q Consensus 1687 k~~p~--------~~~~~~~~~~a~le~~~g~~e~Ar~lfe~a---------------------l~~~P~~~dlw~~y~~ 1737 (1801)
+-+|. .....+|.-|++++...|+.+.|...|+.| ++....+....+.++.
T Consensus 896 ~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR 975 (1416)
T KOG3617|consen 896 KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLAR 975 (1416)
T ss_pred HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHH
Confidence 55554 123589999999999999999999999988 3334445667888999
Q ss_pred HHHHcCChHHHHHHHHHHHhcC-----CCchhH-HHHHHHHH------------HHHHHcCCHHHHHHHHHHH
Q 000242 1738 QEIRLGDVDLIRGLFERAISLS-----LPPKKM-KFLFKKYL------------EYEKSVGEEERIEYVKQKA 1792 (1801)
Q Consensus 1738 le~k~gd~e~ar~lferal~~~-----~~pk~~-k~lw~~yl------------~~E~~~G~~e~a~~v~~rA 1792 (1801)
+|...|+..+|...|-||-... +..+.+ ..+|+.-+ .||..-|+.+.|..+|.||
T Consensus 976 ~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence 9999999999998888775410 111111 13555433 2444445888888888776
No 296
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.69 E-value=0.00017 Score=65.87 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 000242 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAIS 1757 (1801)
Q Consensus 1696 ~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~g-d~e~ar~lferal~ 1757 (1801)
.+|...|..++..|++++|...|++++..+|++..+|..++..+.+.| ++++|+..|++++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555 45555555555554
No 297
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.68 E-value=4.5e-05 Score=85.38 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHH
Q 000242 1567 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1646 (1801)
Q Consensus 1567 e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~ 1646 (1801)
.+-+.|..|+.-|+.- .-++|=++.|++.|..... =.|..+ +|...... +.+-.-++ ..+..
T Consensus 32 ~IvktRr~fE~rL~rr-----~~klnDf~~YI~yE~nlek---lRaKR~-Kr~~v~~K--------~s~sD~si-pqk~~ 93 (435)
T COG5191 32 RIVKTRRKFELRLQRR-----EKKLNDFMRYIKYECNLEK---LRAKRV-KRKKVGKK--------ASFSDMSI-PQKKI 93 (435)
T ss_pred HHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHhhHHH---HHHHHH-HHHHhccc--------ccchhccc-cceee
Confidence 3456677777666431 1246778888888775441 111111 11111100 00000011 11222
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 000242 1647 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSE 1724 (1801)
Q Consensus 1647 ~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~-~~g~~e~Ar~lfe~al~~ 1724 (1801)
=+|.|+..+|++++++|..|+.+.... .+.+...+|..+++..|.+ +++|...+.+++ ..++.+.+|++|.++|+.
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n--vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN--VDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 346677778899999999999999888 9999999999999999998 489999888776 678999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 000242 1725 YPKRTDLWSIYLDQEIR 1741 (1801)
Q Consensus 1725 ~P~~~dlw~~y~~le~k 1741 (1801)
+|.++-+|..|..||..
T Consensus 172 N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 172 NSRSPRIWIEYFRMELM 188 (435)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 99999999999999863
No 298
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=97.68 E-value=9.2e-05 Score=99.12 Aligned_cols=72 Identities=19% Similarity=0.363 Sum_probs=63.5
Q ss_pred CCCCCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCcccc-----------cCcccCccCCCEEEEEEEEeeCCCCeE
Q 000242 625 IHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQR-----------ADLSKTYYVGQSVRSNILDVNSETGRI 692 (1801)
Q Consensus 625 ~~~G~~~~G~V~~i~~~G~fV~f~~-~~~Glv~~s~~s~~~~-----------~~~~~~~~~Gq~V~~~V~~vd~~~~ri 692 (1801)
-+.|+.+.|.|++|+++|+||++.+ ++.||+|.+++++++. ......|++||.|+|+|.++|.+++++
T Consensus 625 ~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~~~I 704 (709)
T TIGR02063 625 EKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDTGKI 704 (709)
T ss_pred ccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEecccCeE
Confidence 4579999999999999999999998 8999999999985432 233467999999999999999999999
Q ss_pred EEee
Q 000242 693 TLSL 696 (1801)
Q Consensus 693 ~lSl 696 (1801)
.+++
T Consensus 705 ~~~l 708 (709)
T TIGR02063 705 DFEL 708 (709)
T ss_pred EEEE
Confidence 9986
No 299
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.014 Score=71.90 Aligned_cols=246 Identities=11% Similarity=0.130 Sum_probs=147.8
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhh-HHHHHHHHHH-------------------------H
Q 000242 1547 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE-KLNIWVAYFN-------------------------L 1600 (1801)
Q Consensus 1547 ~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e-~l~lW~a~l~-------------------------l 1600 (1801)
.++.+..+..-+++.+.+++++++|..+|+..++......|.+ +.|+-..-.+ .
T Consensus 105 ~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~ 184 (652)
T KOG2376|consen 105 LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACI 184 (652)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHH
Confidence 3566666777788888999999999999999876433222222 2222111111 1
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCC-------C---------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHH--
Q 000242 1601 ENEYGNPPEEAVVKVFQRALQYCD-------P---------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV-- 1662 (1801)
Q Consensus 1601 e~~~g~~~~e~a~~vferAl~~~~-------~---------~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~-- 1662 (1801)
+...| ....|.++++.|++.+- . ..+..+++-++...|+.++|.++|...++..+.+...
T Consensus 185 ~i~~g--ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~A 262 (652)
T KOG2376|consen 185 LIENG--KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLA 262 (652)
T ss_pred HHhcc--cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHH
Confidence 22334 34788888888855441 1 1678888889999999999999999999877522111
Q ss_pred ---------------------------HHHHHHHHHHh---------------------CHHHHHHHHHHHHHhCCCCCh
Q 000242 1663 ---------------------------WLRRVQRLLKQ---------------------QQEGVQAVVQRALLSLPRHKH 1694 (1801)
Q Consensus 1663 ---------------------------w~~~a~~~~~~---------------------~~~~A~~ll~ralk~~p~~~~ 1694 (1801)
...++++.... ..+.++++..+.-...|...
T Consensus 263 v~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~- 341 (652)
T KOG2376|consen 263 VAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESL- 341 (652)
T ss_pred HHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHH-
Confidence 11111111111 11111111111111111111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHH--------HHHhcCCCchhH
Q 000242 1695 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFE--------RAISLSLPPKKM 1765 (1801)
Q Consensus 1695 ~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~-~dlw~~y~~le~k~gd~e~ar~lfe--------ral~~~~~pk~~ 1765 (1801)
..+...-+...... .+..|..++......+|.+ ..+....+++.+.+|+++.|..++. ........|.
T Consensus 342 ~~~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~-- 418 (652)
T KOG2376|consen 342 FPILLQEATKVREK-KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG-- 418 (652)
T ss_pred HHHHHHHHHHHHHH-HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--
Confidence 12233323222222 5677788888888888887 6788888999999999999999998 4333222331
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000242 1766 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1800 (1801)
Q Consensus 1766 k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~~~~ 1800 (1801)
+-.....+..+.++...+.+++..|+.|...++
T Consensus 419 --~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 419 --TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred --HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 222233444556778889999999999998754
No 300
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.67 E-value=0.00078 Score=78.58 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHH-HHh-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 000242 1659 SCKVWLRRVQRL-LKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTDLW 1732 (1801)
Q Consensus 1659 ~~~~w~~~a~~~-~~~-~~~~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~---~~dlw 1732 (1801)
....|+..+..+ ++. ++++|...|+..++.+|.+.+ ..+++.+|.+++..|+++.|+..|++++..+|+ ..+.|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 357788888766 556 999999999999999999743 579999999999999999999999999999887 57889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 000242 1733 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1764 (1801)
Q Consensus 1733 ~~y~~le~k~gd~e~ar~lferal~~~~~pk~ 1764 (1801)
...+..+...|+.+.|+..|++++. .+|+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK--KYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 9999999999999999999999998 55544
No 301
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.67 E-value=0.025 Score=66.09 Aligned_cols=144 Identities=12% Similarity=0.093 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000242 1642 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEG 1720 (1801)
Q Consensus 1642 ~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~ 1720 (1801)
...|+..-..+.|.-|+....-..-+..+++. +.-++-.+++.+.+..|. +.+|..|... +.|+....|--=-+
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH---P~ia~lY~~a--r~gdta~dRlkRa~ 319 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH---PDIALLYVRA--RSGDTALDRLKRAK 319 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC---hHHHHHHHHh--cCCCcHHHHHHHHH
Confidence 44445555555555555555555555555555 555555555555555442 2444444332 23332222111111
Q ss_pred HHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 000242 1721 ILS-EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV-GEEERIEYVKQKAME 1794 (1801)
Q Consensus 1721 al~-~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~-G~~e~a~~v~~rAl~ 1794 (1801)
.|. .-|++..-....+..-...|++..||.--|.+.. ..|... +|..+.+.|+-. ||..++++...+|+.
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres--~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRES--AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhh--HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 122 2344444444444444556788888888888887 666544 777788887765 999999999999875
No 302
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=97.66 E-value=7.1e-05 Score=89.48 Aligned_cols=108 Identities=18% Similarity=0.354 Sum_probs=78.9
Q ss_pred CCcccCCEEEEEEEEEeCCeE-EEEEcccccc----ch-hhhhhhhhhcCCCcEEEEEEEEEeece-EEEEEcCCeEEEe
Q 000242 407 KKFKVGAELVFRVLGVKSKRI-TVTHKKTLVK----SK-LAILSSYAEATDRLITHGWITKIEKHG-CFVRFYNGVQGFA 479 (1801)
Q Consensus 407 ~~~~vG~~v~~rVl~v~~~~i-~ls~k~~l~~----~~-~~~~~~~~~~~~g~~~~g~V~~i~~~G-~~V~~~~~v~g~v 479 (1801)
..+++|+.++..+..-+-+|+ .-+.|+.+.. .. ...+..|.+ +.|+++.|+|.++.+.| ++|++ |++.||+
T Consensus 82 ~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea~L 159 (341)
T TIGR01953 82 PDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEGIL 159 (341)
T ss_pred cccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEEEe
Confidence 369999999987743333333 3334443311 11 123344543 58999999999999988 69999 7999999
Q ss_pred cccccCCCCCCCCCCCccCCCEEEEEEEEEeCC--CCeEEEEEee
Q 000242 480 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA--SRRINLSFMM 522 (1801)
Q Consensus 480 p~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~--~~~l~lS~k~ 522 (1801)
|.+++. |.+.|++|+.++|.|++++.. ...+.||.+.
T Consensus 160 P~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~ 198 (341)
T TIGR01953 160 PKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTH 198 (341)
T ss_pred cHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCc
Confidence 999996 446799999999999999955 3579999864
No 303
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.63 E-value=0.00055 Score=81.30 Aligned_cols=155 Identities=13% Similarity=0.134 Sum_probs=109.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHH
Q 000242 1561 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---KVHLALLGLYE 1637 (1801)
Q Consensus 1561 ~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~---~v~~~l~~i~~ 1637 (1801)
.+...|+++.|..++.+. ...| .-.-.+.++...+ ..+.|.+.++++-+..++. ++..+|.+++.
T Consensus 111 i~~~~~~~~~AL~~l~~~-------~~lE---~~al~Vqi~L~~~--R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-------GSLE---LLALAVQILLKMN--RPDLAEKELKNMQQIDEDSILTQLAEAWVNLAT 178 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-------TCHH---HHHHHHHHHHHTT---HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcc-------Cccc---HHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 344567777666655443 2223 2333445556677 5688888888887776664 66667777776
Q ss_pred HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH-HHHH
Q 000242 1638 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA-DRGR 1715 (1801)
Q Consensus 1638 ~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~-e~Ar 1715 (1801)
-.+++.+|..+|+++..+|+.++.++..++...+.+ ++++|.++++.|+...|.+ +.++.+.+-+..-.|+. +.+.
T Consensus 179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~--~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND--PDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH--HHHHHHHHHHHHHTT-TCHHHH
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhCCChhHHH
Confidence 667888999999998888888888888888888888 8899998888888887765 57788888877777766 7778
Q ss_pred HHHHHHHHhCCCCH
Q 000242 1716 SMFEGILSEYPKRT 1729 (1801)
Q Consensus 1716 ~lfe~al~~~P~~~ 1729 (1801)
.++..+-..+|.++
T Consensus 257 ~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 257 RYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHCHHHTTTSH
T ss_pred HHHHHHHHhCCCCh
Confidence 88888888888754
No 304
>PRK11906 transcriptional regulator; Provisional
Probab=97.62 E-value=0.0015 Score=79.44 Aligned_cols=102 Identities=11% Similarity=0.118 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 000242 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753 (1801)
Q Consensus 1674 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lfe 1753 (1801)
...+|.++-++|++..|.+. .+....|.+..-.++++.|..+|++|+..+|+..+.|..++.++.-.|+.++|+..++
T Consensus 319 ~~~~a~~~A~rAveld~~Da--~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDG--KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46778888899999988874 5556666655666779999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHH-HHHHHHHHHHHHc
Q 000242 1754 RAISLSLPPKKMK-FLFKKYLEYEKSV 1779 (1801)
Q Consensus 1754 ral~~~~~pk~~k-~lw~~yl~~E~~~ 1779 (1801)
+|++ +.|.+++ .+.+.|++++..+
T Consensus 397 ~alr--LsP~~~~~~~~~~~~~~~~~~ 421 (458)
T PRK11906 397 KSLQ--LEPRRRKAVVIKECVDMYVPN 421 (458)
T ss_pred HHhc--cCchhhHHHHHHHHHHHHcCC
Confidence 9998 6666653 3466677555433
No 305
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.61 E-value=0.054 Score=60.84 Aligned_cols=215 Identities=16% Similarity=0.121 Sum_probs=144.3
Q ss_pred CCcHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--cCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000242 1535 PRTPDEFERLVRSSPN--SSFVWIKYMAFMLSMADVEKARSIAERALQT--INIREENEKLNIWVAYFNLENEYGNPPEE 1610 (1801)
Q Consensus 1535 ~~a~~~fer~L~~~P~--s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~--i~~~ee~e~l~lW~a~l~le~~~g~~~~e 1610 (1801)
..+...+...+...+. ....+...+..+...+.+..+...+..++.. .+. ....|..+.......+ ..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~ 112 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN-----LAEALLNLGLLLEALG--KYE 112 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc-----hHHHHHHHHHHHHHHh--hHH
Confidence 3444555555555555 3667777777777888888888888887753 221 2245666666666666 347
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHH-HHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHh-CHHHHHHHHHH
Q 000242 1611 AVVKVFQRALQYCDPK-KVHLALLG-LYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1684 (1801)
Q Consensus 1611 ~a~~vferAl~~~~~~-~v~~~l~~-i~~~~g~~~~A~~~~~~~~k~~~---~~~~~w~~~a~~~~~~-~~~~A~~ll~r 1684 (1801)
.+...++.++...+.. ..+..... ++...++++.|...|++++...+ .....+..++..+... .++.|...+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 113 EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 7788888887766553 33444444 67788888888888888866433 2444455555555555 78888888888
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1685 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1685 alk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
++...+.. ....+...+..+...++++.|...+..++...|.....|......+...+..+.+...+.+++.
T Consensus 193 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 193 ALKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88877662 1367777777777777888888888888888887655555555555566677888888888887
No 306
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.61 E-value=0.00017 Score=65.85 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 000242 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYP 1726 (1801)
Q Consensus 1659 ~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g-~~e~Ar~lfe~al~~~P 1726 (1801)
++.+|..+|..++.. ++++|...|++|++..|.+ ..+|..+|..++..| ++++|...|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN--AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH--HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 678999999999999 9999999999999999886 689999999999999 79999999999999988
No 307
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.61 E-value=0.0012 Score=80.86 Aligned_cols=123 Identities=12% Similarity=0.078 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000242 1593 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1672 (1801)
Q Consensus 1593 lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~ 1672 (1801)
+--.++.+....+ ..+.|..+|++..+..|. ++..++.++...++..+|.++++++++..|.+..++...++|++.
T Consensus 171 Lv~~Ll~~l~~t~--~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQ--RYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcc--cHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 3345556655556 469999999999888765 666789999999999999999999999999999999999999999
Q ss_pred h-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000242 1673 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1721 (1801)
Q Consensus 1673 ~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~a 1721 (1801)
. +++.|.++.++|.+..|.. ...|..+|+.|.+.|+++.|...+..+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~--f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSE--FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9 9999999999999999988 489999999999999999999877654
No 308
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.59 E-value=0.021 Score=73.43 Aligned_cols=252 Identities=15% Similarity=0.155 Sum_probs=163.3
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000242 1534 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1613 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~ 1613 (1801)
.-.|.+..+++++.+||...+-.--+-.+++.|..++|..+.+ ++...+.. |.. ....+-+++...+ ..++|.
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~-D~~---tLq~l~~~y~d~~--~~d~~~ 97 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGT-DDL---TLQFLQNVYRDLG--KLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCC-chH---HHHHHHHHHHHHh--hhhHHH
Confidence 6677888899999999999888888888899999999996664 55444443 222 2334445566667 459999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--CHH---------HHHHHH
Q 000242 1614 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQE---------GVQAVV 1682 (1801)
Q Consensus 1614 ~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~--~~~---------~A~~ll 1682 (1801)
.+|+||++.+|..+...+|-..|.+-+.|.+-.+.=-++.+.+|..+-.+-.....+++. .++ -|+..+
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 999999999999877777777777777776666666666667775544333344444433 333 345555
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 000242 1683 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1760 (1801)
Q Consensus 1683 ~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~--~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~ 1760 (1801)
+..++.-..-....=...|-..+...|.+++|...+..-+.. .+-+..+-..-.+++...+...+.-++-.|++.. .
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k-~ 256 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK-G 256 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh-C
Confidence 555554411111222333333444577899999999655433 3445566667788888999999988888888882 2
Q ss_pred CchhHHHHHHHHHH-------------HHHHcCCHHHHHHHHHHHHHHHHh
Q 000242 1761 PPKKMKFLFKKYLE-------------YEKSVGEEERIEYVKQKAMEYVES 1798 (1801)
Q Consensus 1761 ~pk~~k~lw~~yl~-------------~E~~~G~~e~a~~v~~rAl~~v~~ 1798 (1801)
+ ++ |+.|.+ .+..++...+...+.++|.+.+..
T Consensus 257 ~-Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~ 302 (932)
T KOG2053|consen 257 N-DD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGS 302 (932)
T ss_pred C-cc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcc
Confidence 2 22 555555 122344445555555555555443
No 309
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0013 Score=72.02 Aligned_cols=95 Identities=9% Similarity=-0.051 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh-CHHHHHHHH
Q 000242 1610 EAVVKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVV 1682 (1801)
Q Consensus 1610 e~a~~vferAl~~~~~~---~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~---~~~w~~~a~~~~~~-~~~~A~~ll 1682 (1801)
..+.+.+.+.++..+.. ..|..++.++...+++++|...|++++...++. ..+|..++..+... ++++|.+.|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34555565555554443 788999999999999999999999999887653 45899999999999 999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHH
Q 000242 1683 QRALLSLPRHKHIKFISQTAILEF 1706 (1801)
Q Consensus 1683 ~ralk~~p~~~~~~~~~~~a~le~ 1706 (1801)
++|+...|.. ...|...+.++.
T Consensus 96 ~~Al~~~~~~--~~~~~~la~i~~ 117 (168)
T CHL00033 96 FQALERNPFL--PQALNNMAVICH 117 (168)
T ss_pred HHHHHhCcCc--HHHHHHHHHHHH
Confidence 9999998776 377888888888
No 310
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.00017 Score=68.84 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 000242 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753 (1801)
Q Consensus 1674 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lfe 1753 (1801)
+++.|..+|+++++..|.+.....|..+|..+++.|++++|..++++ +...|.+.+.+..++..+.++|++++|+.+|+
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 34555555555555555321234555555555555555555555555 44555555555555555555555555555555
Q ss_pred HH
Q 000242 1754 RA 1755 (1801)
Q Consensus 1754 ra 1755 (1801)
+|
T Consensus 83 ~~ 84 (84)
T PF12895_consen 83 KA 84 (84)
T ss_dssp HH
T ss_pred cC
Confidence 43
No 311
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=97.57 E-value=6.4e-05 Score=89.83 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=69.9
Q ss_pred hcCCCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCCCCCCCCCCccCCCEEEEEEEEEeCCCCeEEEEEeeCC
Q 000242 448 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 524 (1801)
Q Consensus 448 ~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~~~ 524 (1801)
++..|.++.++|+.+.++|+||+||++..|++|.++++..++.+|++.|++||.+.++-++.|+..+.+.+|.+..+
T Consensus 665 ~l~~g~vy~~tIt~~rd~G~~V~l~p~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~~~ls~ralLp 741 (760)
T KOG1067|consen 665 DLEFGGVYTATITEIRDTGVMVELYPMQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGGIMLSSRALLP 741 (760)
T ss_pred ceEeeeEEEEEEeeecccceEEEecCCchhhccchhcccccccChHHHHhhcceeEEEEEeecCccceeehhhhhcC
Confidence 45568899999999999999999999999999999999999999999999999999999999998888877766443
No 312
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.57 E-value=0.0019 Score=77.16 Aligned_cols=201 Identities=13% Similarity=0.149 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC---CC-H-
Q 000242 1553 FVWIKYMAFMLSMADVEKARSIAERALQTIN-IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC---DP-K- 1626 (1801)
Q Consensus 1553 ~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~-~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~---~~-~- 1626 (1801)
.++..-+..+...+++++|.+.|.+|....- .....+-...|..-.+++... +.+.|...|++|+... .. .
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~---~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG---DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4555567777888899999999999876322 112222234444444444333 3588899999998653 21 1
Q ss_pred --HHHHHHHHHHHHh-CChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC---
Q 000242 1627 --KVHLALLGLYERT-EQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--- 1693 (1801)
Q Consensus 1627 --~v~~~l~~i~~~~-g~~~~A~~~~~~~~k~~~------~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~--- 1693 (1801)
..+..++.+|+.. +++++|.+.|+++...|. ....++..++.++.+. ++++|.++|++.....-...
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 7788888888888 889999999999888773 2255677888888888 88888888888877543221
Q ss_pred -hH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH--HHHHHHHHHHHcCC---hHHHHHHHHHHHh
Q 000242 1694 -HI-KFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTD--LWSIYLDQEIRLGD---VDLIRGLFERAIS 1757 (1801)
Q Consensus 1694 -~~-~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~---~~d--lw~~y~~le~k~gd---~e~ar~lferal~ 1757 (1801)
.. ..++..+..++..||+-.|+..|++....+|. ..+ +...+++.+ ..|| ++.+..-|++...
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS-
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccCc
Confidence 11 34555566677788888888888888877764 222 333333332 3444 4445555555443
No 313
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00023 Score=64.84 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=44.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000242 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1771 (1801)
Q Consensus 1706 ~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~ 1771 (1801)
++.|++++|..+|++++..+|++.++|..++.++++.|++++|+.+|++++. ..|++. .+|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~-~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNP-EYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHH-HHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHH-HHHHH
Confidence 4567778888888888888888888888888888888888888888888777 444443 34443
No 314
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=97.55 E-value=0.00011 Score=88.30 Aligned_cols=106 Identities=16% Similarity=0.296 Sum_probs=77.8
Q ss_pred CcccCCEEEEEEEEEe-CCeEEEEEccccccchh-----hhhhhhhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEecc
Q 000242 408 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 481 (1801)
Q Consensus 408 ~~~vG~~v~~rVl~v~-~~~i~ls~k~~l~~~~~-----~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~ 481 (1801)
..++|+.++..+-..+ .+....+.|+.+...-. ..+..|.+ +.|+++.|+|.++.++|+||++ |++.||+|.
T Consensus 86 ~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~-k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP~ 163 (362)
T PRK12327 86 AYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSE-REGDIVTGVVQRRDNRFVYVNL-GKIEAVLPP 163 (362)
T ss_pred cccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEEEEEEeCCcEEEEe-CCeEEEecH
Confidence 5889999998775442 23334444544443211 12233321 6899999999999999999999 679999999
Q ss_pred cccCCCCCCCCCCCccCCCEEEEEEEEEeCCCC--eEEEEEe
Q 000242 482 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFM 521 (1801)
Q Consensus 482 s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~--~l~lS~k 521 (1801)
+++. |.+.|++|+.++|.|++++...+ .+.||..
T Consensus 164 ~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSRt 199 (362)
T PRK12327 164 AEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSRT 199 (362)
T ss_pred HHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEeC
Confidence 8884 45789999999999999996554 5888864
No 315
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]
Probab=97.55 E-value=0.00021 Score=75.65 Aligned_cols=74 Identities=24% Similarity=0.469 Sum_probs=62.2
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccC-C----------ccccCCCCcEEEEEEEEEeCCC-----C
Q 000242 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-S----------PEKEFPIGKLVAGRVLSVEPLS-----K 1307 (1801)
Q Consensus 1244 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~-~----------~~~~f~~G~~V~~~Vl~vd~~~-----~ 1307 (1801)
.|++|.|.|+++.++|+||.+| -.+||+|.+++.|+|+. + -+..|.+|+.|+++|+++.... .
T Consensus 81 ~gEVV~GeVv~~~~~G~fV~ig-p~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~~~ 159 (183)
T COG1095 81 RGEVVEGEVVEVVEFGAFVRIG-PLDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPRES 159 (183)
T ss_pred cccEEEEEEEEEeecceEEEec-cccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCccccc
Confidence 6899999999999999999999 79999999999998532 1 2237889999999999987655 5
Q ss_pred EEEEEEecCcc
Q 000242 1308 RVEVTLKTSDS 1318 (1801)
Q Consensus 1308 ri~lSlk~~~~ 1318 (1801)
+|.+++|+.-.
T Consensus 160 ~I~lTmrq~~L 170 (183)
T COG1095 160 KIGLTMRQPGL 170 (183)
T ss_pred eEEEEeccccC
Confidence 78888887543
No 316
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0039 Score=73.35 Aligned_cols=167 Identities=14% Similarity=0.018 Sum_probs=134.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhh-------HHHHHHHHHHHHHHc
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE-------KLNIWVAYFNLENEY 1604 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e-------~l~lW~a~l~le~~~ 1604 (1801)
++.+++...--+.+..++.+.+..+--+.++.-.++.++|...|+++|.+-|...+.- ++..|..-.|.....
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 4455666666677788888888887777788888999999999999998777543221 246788888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHH
Q 000242 1605 GNPPEEAVVKVFQRALQYCDPK-----KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGV 1678 (1801)
Q Consensus 1605 g~~~~e~a~~vferAl~~~~~~-----~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A 1678 (1801)
|++ ..|.+.|..|++..|+. .+|...+....+.|+..+|..-.+.+++..+...+.++..|++++-. ++++|
T Consensus 263 G~y--~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 263 GNY--RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred cch--hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 854 88999999999998874 77888888999999999999999999999988899999999999988 99999
Q ss_pred HHHHHHHHHhCCCCChHHHHHH
Q 000242 1679 QAVVQRALLSLPRHKHIKFISQ 1700 (1801)
Q Consensus 1679 ~~ll~ralk~~p~~~~~~~~~~ 1700 (1801)
.+-|++|++......+-..|..
T Consensus 341 V~d~~~a~q~~~s~e~r~~l~~ 362 (486)
T KOG0550|consen 341 VEDYEKAMQLEKDCEIRRTLRE 362 (486)
T ss_pred HHHHHHHHhhccccchHHHHHH
Confidence 9999999987755433334433
No 317
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00033 Score=63.18 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=37.4
Q ss_pred HHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000242 1666 RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1728 (1801)
Q Consensus 1666 ~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~ 1728 (1801)
+|..+++. ++++|..+|+++++..|.+ ..+|..+|.+++..|++++|+..|+++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN--PEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45555555 6666666666666666554 4666666666666666666666666666666654
No 318
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0012 Score=78.31 Aligned_cols=139 Identities=13% Similarity=0.131 Sum_probs=102.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CH
Q 000242 1597 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQ 1675 (1801)
Q Consensus 1597 ~l~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~ 1675 (1801)
-.|.+.+.++ ...|..-|+||+...+.. +.-..++... .. + .-..++++++..+++. .+
T Consensus 214 ~Gn~~fK~gk--~~~A~~~Yerav~~l~~~-----------~~~~~ee~~~-~~-~-----~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 214 RGNVLFKEGK--FKLAKKRYERAVSFLEYR-----------RSFDEEEQKK-AE-A-----LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhhHHHhhch--HHHHHHHHHHHHHHhhcc-----------ccCCHHHHHH-HH-H-----HHHHHhhHHHHHHHhhhhH
Confidence 4667777774 488888888887654321 0001111110 00 1 1235678888888888 99
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHH
Q 000242 1676 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD-LIRGLFER 1754 (1801)
Q Consensus 1676 ~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e-~ar~lfer 1754 (1801)
.+|.+...++|...|.+ ++.+++-++.+...|+++.||..|+++++..|.|.++-..++.+-.+...+. +.+.+|.+
T Consensus 274 ~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNN--VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887 5899999999999999999999999999999999999888888876655443 45788888
Q ss_pred HHh
Q 000242 1755 AIS 1757 (1801)
Q Consensus 1755 al~ 1757 (1801)
+..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 776
No 319
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=97.52 E-value=0.00026 Score=64.15 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=66.0
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEee-ccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEee
Q 000242 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH-VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1404 (1801)
Q Consensus 1331 ~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~-~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lsl 1404 (1801)
-.++|+.+. .|+.+.+.|++|.|-+=+++|++. .||++..++..+++.+ +|..+.++|+.+|+++|-|.||.
T Consensus 13 ~P~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 13 FPNINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred cCCCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 456899998 888999999999997657999998 9999999999999999 99999999999999999999873
No 320
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.51 E-value=0.0016 Score=71.55 Aligned_cols=114 Identities=15% Similarity=0.103 Sum_probs=87.6
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 000242 1683 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1759 (1801)
Q Consensus 1683 ~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~---~dlw~~y~~le~k~gd~e~ar~lferal~~~ 1759 (1801)
.+++...+.......+...|..+...|++++|...|++++...|+. ..+|..++.++.+.|++++|+..|++++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 100 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-- 100 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 3333333333345678888999999999999999999999887764 46899999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHhh
Q 000242 1760 LPPKKMKFLFKKYLEYEKS-------VGEEERIEYVKQKAMEYVEST 1799 (1801)
Q Consensus 1760 ~~pk~~k~lw~~yl~~E~~-------~G~~e~a~~v~~rAl~~v~~~ 1799 (1801)
..|+.. ..|..+...... .|+.+.+...+++|+++.+..
T Consensus 101 ~~p~~~-~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a 146 (172)
T PRK02603 101 LNPKQP-SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQA 146 (172)
T ss_pred hCcccH-HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHH
Confidence 666666 455544444433 466778888888888887764
No 321
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.51 E-value=0.082 Score=59.35 Aligned_cols=223 Identities=18% Similarity=0.137 Sum_probs=160.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh--cCC-CHHHHHHHHHHHHHhCC
Q 000242 1565 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ--YCD-PKKVHLALLGLYERTEQ 1641 (1801)
Q Consensus 1565 ~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~--~~~-~~~v~~~l~~i~~~~g~ 1641 (1801)
......+...+..++...+... ....+..........+ ....+...+..++. ..+ ....|..++.++...++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (291)
T COG0457 36 LGELAEALELLEEALELLPNSD---LAGLLLLLALALLKLG--RLEEALELLEKALELELLPNLAEALLNLGLLLEALGK 110 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcccc---chHHHHHHHHHHHHcc--cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh
Confidence 3555666666666665544320 1234455555556666 45778888888876 233 34888888889999999
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHh-CHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000242 1642 NKLADELLYKMIKKFKHSCKVWLRRVQ-RLLKQ-QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVADRGRSMF 1718 (1801)
Q Consensus 1642 ~~~A~~~~~~~~k~~~~~~~~w~~~a~-~~~~~-~~~~A~~ll~ralk~~p~-~~~~~~~~~~a~le~~~g~~e~Ar~lf 1718 (1801)
+..+...+..+....+.....+..+.. .+... +++.|...|++++...|. ......+...+..+...++.+.|...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 999999999999877666555555555 56666 999999999999885552 233455666666677788999999999
Q ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000242 1719 EGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1719 e~al~~~P~-~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~ 1795 (1801)
.+++...|. ....+......+...++.+.|...+.+++. ..|.....++.....+. ..|..+.+...+.++++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 191 EKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLL-ELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 999999998 688888888888889999999999999998 55543323333334444 677888888888887764
No 322
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.48 E-value=0.0071 Score=77.63 Aligned_cols=156 Identities=10% Similarity=0.025 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH--hc---CCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH-HcCCCCHHH
Q 000242 1538 PDEFERLVRSSPNSSFVWIKYMAFML--SM---ADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN-EYGNPPEEA 1611 (1801)
Q Consensus 1538 ~~~fer~L~~~P~s~~~W~~y~~~~~--~~---~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~-~~g~~~~e~ 1611 (1801)
....+++....|.+..+|-.|++... .. .+.++|+.+|++|++.-|... ....++++..... .+. ..+.
T Consensus 323 ~~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a---~a~A~la~~~~~~~~~~--~~~~ 397 (517)
T PRK10153 323 ERMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT---YAQAEKALADIVRHSQQ--PLDE 397 (517)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHhcC--CccH
Confidence 44455565677889999988887753 22 248899999999999877432 2222222222111 111 0000
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHh
Q 000242 1612 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1688 (1801)
Q Consensus 1612 a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~--~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~ 1688 (1801)
.+...+.+..++++.. .+..+.+|..++..+... ++++|...|++|+..
T Consensus 398 ----------------------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 398 ----------------------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL 449 (517)
T ss_pred ----------------------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 0111223333333332 233445555555555555 666666666666666
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000242 1689 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1729 (1801)
Q Consensus 1689 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~ 1729 (1801)
.|. ...|..+|.++...|++++|...|++|+..+|..+
T Consensus 450 ~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 450 EMS---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 652 35666666666666777777777777766666644
No 323
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.45 E-value=0.00038 Score=63.33 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000242 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1737 (1801)
Q Consensus 1674 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~ 1737 (1801)
++++|.++|+++++..|.+ ..++..+|.++++.|++++|+.+|++++...|++..+|..++.
T Consensus 6 ~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 6777777777777777776 4777777777777777777777777777777777666665543
No 324
>PRK11642 exoribonuclease R; Provisional
Probab=97.42 E-value=0.00039 Score=92.97 Aligned_cols=73 Identities=25% Similarity=0.399 Sum_probs=64.4
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCC-cEEEEEcccCCCcc-cC----------CccccCCCCcEEEEEEEEEeCCCCEEE
Q 000242 1243 SPNMIVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGY-VE----------SPEKEFPIGKLVAGRVLSVEPLSKRVE 1310 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~~G~fV~l~~~-v~g~v~~s~lsd~~-~~----------~~~~~f~~G~~V~~~Vl~vd~~~~ri~ 1310 (1801)
++|+++.|.|++|+++|+||+|.+. ++|+||+++|.++| .- +....|++||.|+++|.++|.++++|.
T Consensus 642 ~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rkI~ 721 (813)
T PRK11642 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERKID 721 (813)
T ss_pred cCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCeEE
Confidence 6899999999999999999999864 99999999999763 21 234679999999999999999999999
Q ss_pred EEEec
Q 000242 1311 VTLKT 1315 (1801)
Q Consensus 1311 lSlk~ 1315 (1801)
+++-.
T Consensus 722 f~l~~ 726 (813)
T PRK11642 722 FSLIS 726 (813)
T ss_pred EEEec
Confidence 99853
No 325
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.009 Score=68.49 Aligned_cols=251 Identities=16% Similarity=0.107 Sum_probs=147.2
Q ss_pred HhccCCCCcHHHHHHHHHcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcC
Q 000242 1529 LLEKDAPRTPDEFERLVRSS---PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1605 (1801)
Q Consensus 1529 ~~~~~~~~a~~~fer~L~~~---P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g 1605 (1801)
+...+...|+..++-.+... -++..+|+.++.| ..|++++|.+.|.-+...-.... .+|..++-...-+|
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~f--hLgdY~~Al~~Y~~~~~~~~~~~-----el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF--HLGDYEEALNVYTFLMNKDDAPA-----ELGVNLACCKFYLG 105 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH--hhccHHHHHHHHHHHhccCCCCc-----ccchhHHHHHHHHH
Confidence 44556888888777766433 2478899998776 56899999999987775433222 24543332222222
Q ss_pred CCCHHHHH--------------HHHHHHHhcCCCH-------------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Q 000242 1606 NPPEEAVV--------------KVFQRALQYCDPK-------------KVHLALLGLYERTEQNKLADELLYKMIKKFKH 1658 (1801)
Q Consensus 1606 ~~~~e~a~--------------~vferAl~~~~~~-------------~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~ 1658 (1801)
.| .+|. -+|.-|.+.++.. +-.+.++.+....-.|++|.++|.+.+...|.
T Consensus 106 ~Y--~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 106 QY--IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HH--HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 11 3333 3444444555432 22333444555556689999999999987777
Q ss_pred CHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH--cCC----------------HHHHHHHH-
Q 000242 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGV----------------ADRGRSMF- 1718 (1801)
Q Consensus 1659 ~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~--~g~----------------~e~Ar~lf- 1718 (1801)
...+-..+|-++.+. -++-+.+++.-.|+.+|.+.- +....|..+++ +|+ ++.+..+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti--A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI--AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH--HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 666667777788888 889999999999999988741 22222222221 222 22233332
Q ss_pred ---------HHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000242 1719 ---------EGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1785 (1801)
Q Consensus 1719 ---------e~al~~~P~~----~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a 1785 (1801)
|.||+..|.- ++....++-.+.+++|...|..+... +.|..+-.+..+-+.+. .+|..-..
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-----l~PttP~EyilKgvv~a-alGQe~gS 335 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-----LDPTTPYEYILKGVVFA-ALGQETGS 335 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-----cCCCChHHHHHHHHHHH-HhhhhcCc
Confidence 3345555642 34567777778899999999998866 44444433333333332 23443333
Q ss_pred HHHHHHHHHHH
Q 000242 1786 EYVKQKAMEYV 1796 (1801)
Q Consensus 1786 ~~v~~rAl~~v 1796 (1801)
++...-|.++.
T Consensus 336 reHlKiAqqff 346 (557)
T KOG3785|consen 336 REHLKIAQQFF 346 (557)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 326
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=97.42 E-value=0.0004 Score=91.77 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=63.4
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC-CCcEEEEEcccCCCcc-c----------CCccccCCCCcEEEEEEEEEeCCCCEEE
Q 000242 1243 SPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGY-V----------ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1310 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~~G~fV~l~-~~v~g~v~~s~lsd~~-~----------~~~~~~f~~G~~V~~~Vl~vd~~~~ri~ 1310 (1801)
++|+.+.|.|++++++|+||.|+ .+++|+||++++.|++ . ++....|++||.|+++|.++|.++++|.
T Consensus 571 ~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~I~ 650 (654)
T TIGR00358 571 KVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRSII 650 (654)
T ss_pred CCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCeEE
Confidence 57999999999999999999998 7899999999999864 1 2344679999999999999999999999
Q ss_pred EEE
Q 000242 1311 VTL 1313 (1801)
Q Consensus 1311 lSl 1313 (1801)
+++
T Consensus 651 f~l 653 (654)
T TIGR00358 651 FEL 653 (654)
T ss_pred EEE
Confidence 886
No 327
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional
Probab=97.40 E-value=0.0006 Score=75.81 Aligned_cols=75 Identities=20% Similarity=0.446 Sum_probs=63.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccC-----------CccccCCCCcEEEEEEEEEeCCC-----
Q 000242 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLS----- 1306 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~-----------~~~~~f~~G~~V~~~Vl~vd~~~----- 1306 (1801)
.+|+++.|.|++++++|+||+++ .++|+++.+++.+++.. +....|++|+.|+++|++++.++
T Consensus 80 ~~GEVv~g~V~~v~~~Gi~V~lg-~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~~~ 158 (187)
T PRK08563 80 ELQEVVEGEVVEVVEFGAFVRIG-PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRPRG 158 (187)
T ss_pred cCCCEEEEEEEEEEccEEEEEEe-CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCCCC
Confidence 36999999999999999999998 59999999999876432 34467899999999999999754
Q ss_pred CEEEEEEecCcc
Q 000242 1307 KRVEVTLKTSDS 1318 (1801)
Q Consensus 1307 ~ri~lSlk~~~~ 1318 (1801)
.+|.+|++..-.
T Consensus 159 ~~I~ls~~~~~L 170 (187)
T PRK08563 159 SKIGLTMRQPGL 170 (187)
T ss_pred CEEEEEecCCCC
Confidence 389999987544
No 328
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.39 E-value=0.014 Score=66.12 Aligned_cols=156 Identities=15% Similarity=0.101 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChH-HHHHHHH
Q 000242 1628 VHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTA 1702 (1801)
Q Consensus 1628 v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~---~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~-~~~~~~a 1702 (1801)
.+...+..+.+.|++.+|...|+++...||. ..++++.++..+.+. +++.|...|++.++.+|.+.+. .++...|
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3444456677889999999999999988874 477888888888888 9999999999999999887653 3444444
Q ss_pred HHHHH-----------cCCHHHHHHHHHHHHHhCCCCHH----------HHHHH-------HHHHHHcCChHHHHHHHHH
Q 000242 1703 ILEFK-----------NGVADRGRSMFEGILSEYPKRTD----------LWSIY-------LDQEIRLGDVDLIRGLFER 1754 (1801)
Q Consensus 1703 ~le~~-----------~g~~e~Ar~lfe~al~~~P~~~d----------lw~~y-------~~le~k~gd~e~ar~lfer 1754 (1801)
...+. .+...+|...|+.++..+|++.. +...+ +.++.+.|.+..|..-|+.
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~ 166 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQY 166 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 43322 22356889999999999998632 22222 5566678999999999999
Q ss_pred HHhcCCCchhH--HHHHHHHHHHHHHcCCHHHH
Q 000242 1755 AISLSLPPKKM--KFLFKKYLEYEKSVGEEERI 1785 (1801)
Q Consensus 1755 al~~~~~pk~~--k~lw~~yl~~E~~~G~~e~a 1785 (1801)
++. ..|+.. ...+...+.-..+.|..+.+
T Consensus 167 v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 167 VIE--NYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHH--HSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHH--HCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 998 333332 22333444445566766643
No 329
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0031 Score=74.94 Aligned_cols=141 Identities=21% Similarity=0.225 Sum_probs=108.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000242 1559 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1638 (1801)
Q Consensus 1559 ~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~ 1638 (1801)
+..+.+.+++..|...|+||+..++++. .+. .++ .+.++.+ ....|+.++.+|.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~----------------~~~---~ee-~~~~~~~-----k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRR----------------SFD---EEE-QKKAEAL-----KLACHLNLAACYLK 269 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccc----------------cCC---HHH-HHHHHHH-----HHHHhhHHHHHHHh
Confidence 4566788999999999999997666422 111 111 1111111 13568899999999
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHH
Q 000242 1639 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRS 1716 (1801)
Q Consensus 1639 ~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~-~e~Ar~ 1716 (1801)
.+.+.+|.+...+++...+.+.++.++.++.++.. .++.|+..|++|++..|.++ .+...++.+-.+..+ .++.+.
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk--a~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK--AARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999996 566666666555443 456688
Q ss_pred HHHHHHHhCC
Q 000242 1717 MFEGILSEYP 1726 (1801)
Q Consensus 1717 lfe~al~~~P 1726 (1801)
+|.+++...+
T Consensus 348 ~y~~mF~k~~ 357 (397)
T KOG0543|consen 348 MYANMFAKLA 357 (397)
T ss_pred HHHHHhhccc
Confidence 8888887655
No 330
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=97.36 E-value=0.00022 Score=85.71 Aligned_cols=122 Identities=16% Similarity=0.234 Sum_probs=85.9
Q ss_pred cccccCCCeEeeEEEeecCCCeEEEeccchhhchhhc--CCCccccC--CCCCEEEEEEEEEecCeEEEEECCCeEEEee
Q 000242 581 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHI--HPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 656 (1801)
Q Consensus 581 ~~~~k~G~~i~~vl~~d~~~~~i~ls~K~~l~~~~~~--~~~~~~~~--~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~ 656 (1801)
....++||.++.-+....-++....++|+.+...... --.-|+++ +.|+.++|+|.++.+.|+||.+ |++.||+|
T Consensus 84 ~~~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP 162 (362)
T PRK12327 84 NPAYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSEREGDIVTGVVQRRDNRFVYVNL-GKIEAVLP 162 (362)
T ss_pred CccccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEEeCCcEEEEe-CCeEEEec
Confidence 3457789988733332223344555666666544321 11124455 7899999999999999999999 66999999
Q ss_pred CCccCcccccCcccCccCCCEEEEEEEEeeCCCC--eEEEeecccccCCCChhhHHHHHhHH
Q 000242 657 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFLLE 716 (1801)
Q Consensus 657 ~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~--ri~lSlk~~~~~~~~~~~~~~~~~~~ 716 (1801)
++++. |.+.|++||+++|.|.+++.+.+ .+.||. +++.|+..+|..+
T Consensus 163 ~~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSR-------t~p~~v~~Lfe~E 211 (362)
T PRK12327 163 PAEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSR-------THPGLVKRLFELE 211 (362)
T ss_pred HHHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEe-------CCHHHHHHHHHHh
Confidence 98874 36789999999999999997655 466664 3456677777643
No 331
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=97.35 E-value=0.0011 Score=63.45 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=52.7
Q ss_pred CCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCc-----------ccccCCCCEEEEEEEEEecCCCe
Q 000242 1334 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI-----------ETIYRAGEKVKVKILKVDKEKRR 1399 (1801)
Q Consensus 1334 ~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~-----------~~~~~~Gd~V~~~Vl~id~e~~r 1399 (1801)
+|+++.|+|+++.++|+||.++| +++++|.+.+.++..-++ ...+..|+.|++||+.+..+.+.
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~Gp--l~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~ 75 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVGP--LSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDATD 75 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEcC--ceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEccCc
Confidence 58999999999999999999985 899999999976543221 34588999999999999776554
No 332
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.35 E-value=0.00063 Score=64.93 Aligned_cols=80 Identities=15% Similarity=0.048 Sum_probs=57.5
Q ss_pred hCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000242 1639 TEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1715 (1801)
Q Consensus 1639 ~g~~~~A~~~~~~~~k~~~~--~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar 1715 (1801)
.++++.|...|++++...|. ....|+.+|..+++. ++++|..++++ ++..+.+ ...+..+|+.+++.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhCCHHHHH
Confidence 56777888888888877763 456777788888888 88888888877 5554433 466667788888888888888
Q ss_pred HHHHHH
Q 000242 1716 SMFEGI 1721 (1801)
Q Consensus 1716 ~lfe~a 1721 (1801)
..|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888764
No 333
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.33 E-value=0.003 Score=75.09 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=104.6
Q ss_pred HHHHhcCC---CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHh-CHHHHHHHHHHHHHhCC
Q 000242 1617 QRALQYCD---PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK--VWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1690 (1801)
Q Consensus 1617 erAl~~~~---~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~--~w~~~a~~~~~~-~~~~A~~ll~ralk~~p 1690 (1801)
+.|++... ..+.......+|.+.++++.|...++.+.+...++.- ++..|..+.... ++.+|..+|+.....++
T Consensus 119 ~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~ 198 (290)
T PF04733_consen 119 EEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG 198 (290)
T ss_dssp HHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-
T ss_pred HHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC
Confidence 34444443 3466677788999999999999999998765443322 222333333334 78999999999887776
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCchhH
Q 000242 1691 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-DLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1691 ~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~-e~ar~lferal~~~~~pk~~ 1765 (1801)
.. +.++...|..+..+|++++|..+++.++..+|++++.+...+-+....|.. +.+..++.++-. ..|..+
T Consensus 199 ~t--~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 199 ST--PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp -S--HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred CC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 54 578888999999999999999999999999999999999999988888887 667777777665 455444
No 334
>cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.33 E-value=0.00021 Score=60.49 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=53.2
Q ss_pred cceEEEEEEEEeceeEEEeecCCcceEEEEeeecCC-CCCCCcccccCCCeEEEEEeecC
Q 000242 837 HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 895 (1801)
Q Consensus 837 G~~v~g~V~~i~~~~v~v~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~~~V~~~~ 895 (1801)
++..++.|+++..+|++||+.+.+.++.+.-.+|+| ++++.++++++||++.+.|....
T Consensus 1 ~S~htA~VQh~~kdfAvvSL~~t~~L~a~p~~sHLNdtfrf~seklkvG~~l~v~lk~~~ 60 (69)
T cd05701 1 DSRHTAIVQHADKDFAIVSLATTGDLAAFPTRSHLNDTFRFDSEKLSVGQCLDVTLKDPN 60 (69)
T ss_pred CCccchhhhhhhhceEEEEeeccccEEEEEchhhccccccccceeeeccceEEEEEecCc
Confidence 356789999999999999999999999999899999 77888999999999999988754
No 335
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.33 E-value=0.0059 Score=62.10 Aligned_cols=97 Identities=16% Similarity=0.102 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 000242 1661 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTDLWSIY 1735 (1801)
Q Consensus 1661 ~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~-~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~---~~dlw~~y 1735 (1801)
.+++.++..+... +.++|..+|++|+..-.. .....+++.++..+...|++++|..+|+.++..+|. +..++.-|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 4566677777777 888888888888875333 223468888888888888999999999888888888 66777778
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 000242 1736 LDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1736 ~~le~k~gd~e~ar~lferal~ 1757 (1801)
+......|+.++|...+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888776
No 336
>cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.32 E-value=0.0014 Score=54.88 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=54.8
Q ss_pred ccEEEEEEEEeeccee-EEEecccCceeeEEeeeecCCcccccCCeEEEEEEEeecccceEEEee
Q 000242 741 GSVIEGKVHESNDFGV-VVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 804 (1801)
Q Consensus 741 G~~v~~~V~~~~~~g~-~v~~~~~~~~~g~i~~~~ls~~~~~~G~~v~~~vl~~~~~~~~v~ls~ 804 (1801)
|+..+..|.+.+++|- .+.-.+-.|++-..+.+|+.+.++.+|++++++||++|.-+..+++|+
T Consensus 1 G~~L~LvV~~~~edgsv~fs~g~v~g~tv~AtryH~~g~nl~pGqK~kaviLhvD~l~~~VhVSl 65 (65)
T cd05700 1 GDQLKLVVQDVTEDGSVMFSGGQVSGLTVLASRYHKEGVNVTPGCKLKAVILHVDFVKSQVHVSL 65 (65)
T ss_pred CceEEEEEeeeccCCcEEEecCCcCCcEEEEEEEEecceecCCCceeEEEEEEEeeEEeEEEEeC
Confidence 6778889999998885 455555557777889999999999999999999999999999999885
No 337
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0054 Score=70.25 Aligned_cols=162 Identities=22% Similarity=0.177 Sum_probs=116.7
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCC
Q 000242 1563 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQ 1641 (1801)
Q Consensus 1563 ~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~g~ 1641 (1801)
+...++..|+.+.+-.+. -.+||...+++|+++.+|.+ | +.++|...|+-+.+..+. .++|..++-.+.-.|.
T Consensus 33 ls~rDytGAislLefk~~--~~~EEE~~~~lWia~C~fhL--g--dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLN--LDREEEDSLQLWIAHCYFHL--G--DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HhcccchhHHHHHHHhhc--cchhhhHHHHHHHHHHHHhh--c--cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence 344678889888887772 23344457899999999854 6 459999999998875443 4888888888877888
Q ss_pred hHHHHHHHHHHHH-------------hcCCCHHHHH--------------HHHHHHHHh-CHHHHHHHHHHHHHhCCCCC
Q 000242 1642 NKLADELLYKMIK-------------KFKHSCKVWL--------------RRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1693 (1801)
Q Consensus 1642 ~~~A~~~~~~~~k-------------~~~~~~~~w~--------------~~a~~~~~~-~~~~A~~ll~ralk~~p~~~ 1693 (1801)
|.+|.++-.++-+ ++ .+.+-|+ .+|.....+ .+++|..+|.|.|.-.|...
T Consensus 107 Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 8888877666432 11 2223333 344444444 68999999999998887764
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000242 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733 (1801)
Q Consensus 1694 ~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~ 1733 (1801)
.+-...|..+++..-++-+.+++.--|+..|+++-..+
T Consensus 186 --alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 186 --ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred --hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 45555667778888899999999999999999866443
No 338
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.26 E-value=0.0025 Score=65.63 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhCC-CCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHH
Q 000242 1676 EGVQAVVQRALLSLP-RHKHIKFISQTAILEFKN----GVADRGRSMFEGILSEYPKR---------TDLWSIYLDQEIR 1741 (1801)
Q Consensus 1676 ~~A~~ll~ralk~~p-~~~~~~~~~~~a~le~~~----g~~e~Ar~lfe~al~~~P~~---------~dlw~~y~~le~k 1741 (1801)
++.++.|+..+.... ....+..|..|..+..+. +.-..-+.+++++++.+.++ ..+|..|+++..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 345566666666665 444467777777765533 34455666777777665442 347888887543
Q ss_pred cCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1742 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1742 ~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
.++.+|..+.......+-+ .+|..|..+....|++++|..+|++++
T Consensus 81 -----~~~~if~~l~~~~IG~~~A-~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -----DPREIFKFLYSKGIGTKLA-LFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----HHHHHHHHHHHHTTSTTBH-HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCccHHHH-HHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 7888888888777776667 789999999888899999999998875
No 339
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.18 E-value=0.041 Score=58.28 Aligned_cols=122 Identities=17% Similarity=0.126 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 000242 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIY 1735 (1801)
Q Consensus 1659 ~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~--~~dlw~~y 1735 (1801)
...-.+.++..+.+. ++.+|+..|++++.-.-.+ ...+++..|+..+..+++..|...+|.+.+.+|. .+|-...|
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 445567788888999 9999999999999765444 3689999999999999999999999999999986 46778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000242 1736 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1785 (1801)
Q Consensus 1736 ~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a 1785 (1801)
+..+...|.+++|++.||.++. .+|... --..|..|..++|...++
T Consensus 167 aR~laa~g~~a~Aesafe~a~~--~ypg~~--ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS--YYPGPQ--ARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH--hCCCHH--HHHHHHHHHHHhcchhHH
Confidence 9999999999999999999999 777654 345678888888854443
No 340
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.18 E-value=0.051 Score=63.07 Aligned_cols=161 Identities=13% Similarity=0.036 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000242 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV---WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1701 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~---w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~-~~~~~~ 1701 (1801)
..+...+.-+.+.|++++|.+.|++++..+|.+.-+ .+.++..+.+. +++.|...|++.++.+|.+... .++...
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 444455566677899999999999999988876444 36777777888 8999999999999999887643 344554
Q ss_pred HHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHH---HHH--------------HHHHHHHHcCChH
Q 000242 1702 AILEFKNG---------------V---ADRGRSMFEGILSEYPKRTD---LWS--------------IYLDQEIRLGDVD 1746 (1801)
Q Consensus 1702 a~le~~~g---------------~---~e~Ar~lfe~al~~~P~~~d---lw~--------------~y~~le~k~gd~e 1746 (1801)
|...+..+ | ...|...|++.++.+|++.- ... .-+.++.+.|.+.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 44322221 2 23566889999999998632 111 1244566789999
Q ss_pred HHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000242 1747 LIRGLFERAISLSLPPKK---MKFLFKKYLEYEKSVGEEERIEYVKQ 1790 (1801)
Q Consensus 1747 ~ar~lferal~~~~~pk~---~k~lw~~yl~~E~~~G~~e~a~~v~~ 1790 (1801)
.|..-|+.++. ..|.. .+.+|.. ..-....|..+.+..+..
T Consensus 193 AA~~r~~~v~~--~Yp~t~~~~eal~~l-~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 193 AVVNRVEQMLR--DYPDTQATRDALPLM-ENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHH--HCCCCchHHHHHHHH-HHHHHHcCChHHHHHHHH
Confidence 99999999998 33332 2222222 233445677777665543
No 341
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.17 E-value=0.058 Score=61.08 Aligned_cols=184 Identities=14% Similarity=0.091 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--HH
Q 000242 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--KV 1628 (1801)
Q Consensus 1551 s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~--~v 1628 (1801)
....|++-+.-.++.|++++|...|++.....|+.+-.++..+-.+|.++ ..+ +.+.|...++|-++..|.. --
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y--k~~--~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY--KNG--EYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH--hcc--cHHHHHHHHHHHHHhCCCCCChh
Confidence 45566666666677777777777777777666666655444444444433 223 3366666677776666642 22
Q ss_pred HHHHHHHHHH----------hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCCCChHHHH
Q 000242 1629 HLALLGLYER----------TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFI 1698 (1801)
Q Consensus 1629 ~~~l~~i~~~----------~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p~~~~~~~~ 1698 (1801)
|..|+..+.. ..-..+|..-|+..+.+||++.=+ ..|..-+..+-..+ ..--
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya-------------~dA~~~i~~~~d~L-----A~~E 170 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA-------------PDAKARIVKLNDAL-----AGHE 170 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch-------------hhHHHHHHHHHHHH-----HHHH
Confidence 3333332211 111235667777778888765321 11111111111111 1223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1699 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDL---WSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1699 ~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dl---w~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
+..|.++.+.|.+..|..-|+++++.+|+.... ...+...+.+.|-.+.|.. ..++|.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~-~~~vl~ 231 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK-TAKVLG 231 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH-HHHHHH
Confidence 445677778888888888888888887775543 3333344556666655544 333444
No 342
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.032 Score=61.64 Aligned_cols=194 Identities=15% Similarity=0.149 Sum_probs=119.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH------HHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 000242 1560 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL------ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL 1633 (1801)
Q Consensus 1560 ~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~l------e~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~ 1633 (1801)
..+.....+++|.....+|.+-.. ..+ ++|-+--.. ..... ...++..+|++| .
T Consensus 39 vafRnAk~feKakdcLlkA~~~yE----nnr-slfhAAKayEqaamLake~~--klsEvvdl~eKA-------------s 98 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYE----NNR-SLFHAAKAYEQAAMLAKELS--KLSEVVDLYEKA-------------S 98 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHH----hcc-cHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHH-------------H
Confidence 344556788888877777774321 111 233221111 11122 124445555555 3
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHc
Q 000242 1634 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKN 1708 (1801)
Q Consensus 1634 ~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~----~~~~~~~~a~le~~~ 1708 (1801)
.+|..+|..+.|-..++++-+ .++. ++++|.++|+|++..+.... ..+++...+..+.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 567777777777666666654 5566 89999999999998765432 246777777888888
Q ss_pred CCHHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHHHcC
Q 000242 1709 GVADRGRSMFEGI------LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL--SLPPKKMKFLFKKYLEYEKSVG 1780 (1801)
Q Consensus 1709 g~~e~Ar~lfe~a------l~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~--~~~pk~~k~lw~~yl~~E~~~G 1780 (1801)
..+++|-..|.+- ...+|.....+...+-++.-..|+..|..+|....+. -+.+... ......+.+. ..|
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~-r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS-RSLENLLTAY-DEG 241 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH-HHHHHHHHHh-ccC
Confidence 8888888777764 2345666556666666666777899999999886651 1233333 2344445443 368
Q ss_pred CHHHHHHHHH
Q 000242 1781 EEERIEYVKQ 1790 (1801)
Q Consensus 1781 ~~e~a~~v~~ 1790 (1801)
|.+.+..+..
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 8888776653
No 343
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.01 Score=63.26 Aligned_cols=103 Identities=16% Similarity=0.072 Sum_probs=83.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 000242 1559 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYE 1637 (1801)
Q Consensus 1559 ~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~ 1637 (1801)
+.-+...|++++|..-|.+||..+|.....+|..++...+.....++.+ +.|..-..+|++.+|.. ....+.+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~--e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW--ESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH--HHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 3445677999999999999999999877777777777666666777744 88888999999999875 77778888999
Q ss_pred HhCChHHHHHHHHHHHHhcCCCHHHH
Q 000242 1638 RTEQNKLADELLYKMIKKFKHSCKVW 1663 (1801)
Q Consensus 1638 ~~g~~~~A~~~~~~~~k~~~~~~~~w 1663 (1801)
+..++++|.+-|.+.+...|....+-
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 99999999999999888876554433
No 344
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.03 E-value=0.0012 Score=54.34 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000242 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1737 (1801)
Q Consensus 1696 ~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~ 1737 (1801)
.+|..+|..+...|++++|+.+|+++++.+|++.++|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999999998875
No 345
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.02 E-value=0.0029 Score=58.44 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=27.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1704 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1704 le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
++++.++++.|...+++++..+|.+..+|..++.++.+.|+++.|+..|++++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555555555554
No 346
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.005 Score=65.34 Aligned_cols=76 Identities=24% Similarity=0.388 Sum_probs=64.3
Q ss_pred cCCCCCCcEEEEEEEEEeeceEEEEEeC---------CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCe
Q 000242 1329 LSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1399 (1801)
Q Consensus 1329 ~~~~~~G~~v~G~V~~v~~~G~fV~l~~---------~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~r 1399 (1801)
..-++.|++|-|+|+++....+.|++-. +...|-+|+|++.+.++++.++.|++||.|+|+|++.- -.
T Consensus 59 ~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~ 135 (188)
T COG1096 59 PPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DP 135 (188)
T ss_pred CCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCCCceeeEEEEecccccccccccccccccEEEEEEEecC---CC
Confidence 4468899999999999999998888741 12567789999999999999999999999999999984 45
Q ss_pred eEEeeccc
Q 000242 1400 ISLGMKSS 1407 (1801)
Q Consensus 1400 i~lslK~~ 1407 (1801)
+.||++.-
T Consensus 136 ~~Lst~~~ 143 (188)
T COG1096 136 IQLSTKGN 143 (188)
T ss_pred eEEEecCC
Confidence 78887763
No 347
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.00 E-value=0.0025 Score=58.91 Aligned_cols=68 Identities=25% Similarity=0.196 Sum_probs=60.7
Q ss_pred HHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000242 1667 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1736 (1801)
Q Consensus 1667 a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~ 1736 (1801)
...+++. ++++|.+.++++++..|.+ +.+|..+|.++++.|+++.|+..|+++++..|++.+.-...+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD--PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc--chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4567778 9999999999999999997 589999999999999999999999999999999887655443
No 348
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=97.00 E-value=0.0017 Score=59.04 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=62.8
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC-CCcEEEEE-cccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000242 1243 SPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVL-LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1313 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~~G~fV~l~-~~v~g~v~-~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSl 1313 (1801)
++|+++. .|+.+.+.|++|.|- .+++|++. .++++.++....++.+ +|....++|+.+|+++|-|.||.
T Consensus 15 ~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 15 NINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred CCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 5789998 888999999999874 47999999 9999999888888888 99999999999999999999985
No 349
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=96.98 E-value=0.0035 Score=59.99 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=51.1
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCc-----------cccCCCCcEEEEEEEEEeCCC
Q 000242 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP-----------EKEFPIGKLVAGRVLSVEPLS 1306 (1801)
Q Consensus 1244 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~-----------~~~f~~G~~V~~~Vl~vd~~~ 1306 (1801)
.|+++.|.|+++++.|+||.+| .+++|++...+.+++..+| ...+.+|+.|++||+.+..+.
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~G-pl~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~ 73 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVG-PLSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDA 73 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEc-CceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEcc
Confidence 4899999999999999999998 6899999999887655444 234678999999998886543
No 350
>PRK05054 exoribonuclease II; Provisional
Probab=96.96 E-value=0.0021 Score=84.57 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=60.4
Q ss_pred CCC--cEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcc---cc--cC-------cccccCCCCEEEEEEEEEecCCC
Q 000242 1333 HVG--DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED---HV--DN-------IETIYRAGEKVKVKILKVDKEKR 1398 (1801)
Q Consensus 1333 ~~G--~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~---~~--~~-------~~~~~~~Gd~V~~~Vl~id~e~~ 1398 (1801)
++| +.+.|.|+++++||+||+|.+.++.|++|++.+.+. +. .+ -...|+.||.|+++|.++|.+++
T Consensus 558 ~~G~~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~ 637 (644)
T PRK05054 558 KAGTDTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETR 637 (644)
T ss_pred ccCCCeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccC
Confidence 455 599999999999999999998789999999999763 11 11 12579999999999999999999
Q ss_pred eeEEee
Q 000242 1399 RISLGM 1404 (1801)
Q Consensus 1399 ri~lsl 1404 (1801)
+|.+.+
T Consensus 638 ~i~~~~ 643 (644)
T PRK05054 638 SIIARP 643 (644)
T ss_pred eEEEEE
Confidence 998764
No 351
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=96.88 E-value=0.011 Score=61.06 Aligned_cols=105 Identities=15% Similarity=0.278 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHh--C---HHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHcCC
Q 000242 1646 DELLYKMIKKFK---HSCKVWLRRVQRLLKQ--Q---QEGVQAVVQRALLSLPRHK-------HIKFISQTAILEFKNGV 1710 (1801)
Q Consensus 1646 ~~~~~~~~k~~~---~~~~~w~~~a~~~~~~--~---~~~A~~ll~ralk~~p~~~-------~~~~~~~~a~le~~~g~ 1710 (1801)
+..|+..+..+. +....|..|..+..+. . ......+++|++..+.... .+.+|..||.+..
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~---- 80 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS---- 80 (126)
T ss_dssp HHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS----
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc----
Confidence 344444444433 4455555555555544 1 2333445555555443321 1345555554221
Q ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000242 1711 ADRGRSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1756 (1801)
Q Consensus 1711 ~e~Ar~lfe~al~~~--P~~~dlw~~y~~le~k~gd~e~ar~lferal 1756 (1801)
.++.+|..+.... -+...+|..||.++...|++++|.++|.++|
T Consensus 81 --~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 --DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp --HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 5555555544332 3344555555555555555555555555543
No 352
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.012 Score=67.11 Aligned_cols=95 Identities=15% Similarity=0.221 Sum_probs=80.7
Q ss_pred HHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCH
Q 000242 1637 ERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVA 1711 (1801)
Q Consensus 1637 ~~~g~~~~A~~~~~~~~k~~~~~---~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~ 1711 (1801)
.++|+|..|...|..-+++||.+ +.+++=+++.++.+ ++++|...|.++.+.+|++. .++.+++.|..+.++|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 46788999999999999999854 55666778888888 99999999999999998864 358899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHH
Q 000242 1712 DRGRSMFEGILSEYPKRTDL 1731 (1801)
Q Consensus 1712 e~Ar~lfe~al~~~P~~~dl 1731 (1801)
+.|+..|+.+++.||.....
T Consensus 232 d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 232 DEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999987554
No 353
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.85 E-value=0.018 Score=59.60 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000242 1659 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1731 (1801)
Q Consensus 1659 ~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dl 1731 (1801)
++..++.-|.-.++. ++++|.+.|+.....+|.... .++.+..+..+++.++++.|++.+++.++.+|.+..+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 455666667677777 888999999888888887532 3677777888888999999999999999999988763
No 354
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=96.84 E-value=0.0033 Score=58.66 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=43.1
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCC-----------------ceeEEeeccccCcccccC--cccccCCCCEEEEEEEEE
Q 000242 1333 HVGDIVIGQIKRVESYGLFITIENT-----------------NLVGLCHVSELSEDHVDN--IETIYRAGEKVKVKILKV 1393 (1801)
Q Consensus 1333 ~~G~~v~G~V~~v~~~G~fV~l~~~-----------------~v~gl~~~sel~~~~~~~--~~~~~~~Gd~V~~~Vl~i 1393 (1801)
++|++|.|+|+++++.-+++.|--- ...|.+|++++-....++ +.+.|++||.|+|+|+++
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 6899999999999999888877421 468999999987655543 688999999999999975
No 355
>PRK15331 chaperone protein SicA; Provisional
Probab=96.82 E-value=0.049 Score=57.74 Aligned_cols=95 Identities=9% Similarity=-0.078 Sum_probs=78.1
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH
Q 000242 1633 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1711 (1801)
Q Consensus 1633 ~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~ 1711 (1801)
+--+.+.|++++|..+|.-++...+.+++.|+.+|..+... ++++|..+|..|....+.+. ...+..|+.++..|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp--~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY--RPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--CccchHHHHHHHhCCH
Confidence 34456789999999999999988888999999999988888 99999999999988776654 4567778888889999
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 000242 1712 DRGRSMFEGILSEYPKRTD 1730 (1801)
Q Consensus 1712 e~Ar~lfe~al~~~P~~~d 1730 (1801)
+.|+..|+.++. .|....
T Consensus 122 ~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 122 AKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHHHHHHh-CcchHH
Confidence 999999999887 454333
No 356
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.79 E-value=0.021 Score=58.08 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHH
Q 000242 1594 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----KKVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRR 1666 (1801)
Q Consensus 1594 W~a~l~le~~~g~~~~e~a~~vferAl~~~~~----~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~---~~~~w~~~ 1666 (1801)
|..+...+-..| ..++|...|++|+..... ...++.++..|...|++++|..++++++..+|+ +..++..+
T Consensus 4 ~~~~A~a~d~~G--~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLG--REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 334444445555 346666666666654322 155666666666666666666666666666555 55555555
Q ss_pred HHHHHHh-CHHHHHHHHHHHH
Q 000242 1667 VQRLLKQ-QQEGVQAVVQRAL 1686 (1801)
Q Consensus 1667 a~~~~~~-~~~~A~~ll~ral 1686 (1801)
+..+... +.++|...+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 5555555 5555555555544
No 357
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0065 Score=74.04 Aligned_cols=158 Identities=18% Similarity=0.289 Sum_probs=106.9
Q ss_pred CccccCCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000242 620 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 699 (1801)
Q Consensus 620 ~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~ 699 (1801)
.+++++..|..++|.|.++..||+||++...+.||+|.++++.. ..|.+|+.+.+.|..+.++++.+.+-....
T Consensus 115 c~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~~ 188 (715)
T COG1107 115 CTMEDVEAGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVGL 188 (715)
T ss_pred cchhhcccceeeeccccchhhhcceeecChhhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecCC
Confidence 46788999999999999999999999999999999999999852 348999999999999999888887766554
Q ss_pred ccCCCChhhHHHHHhHHHHHHHhhcccCCCcccccccccccccEE--EEEEEEeecce--eEEEecccCceeeEEeeeec
Q 000242 700 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI--EGKVHESNDFG--VVVSFEEHSDVYGFITHHQL 775 (1801)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v--~~~V~~~~~~g--~~v~~~~~~~~~g~i~~~~l 775 (1801)
.... +.+.-..+. -....+ ..+ .+|+.| .|+|+.++.++ -++++.+. +|+++..-.
T Consensus 189 ~~Y~-----------~~~~~ke~~----r~~i~~-id~-~ig~tV~I~GeV~qikqT~GPTVFtltDe---tg~i~aAAF 248 (715)
T COG1107 189 DRYR-----------EVQVEKELP----RTLIDD-LDE-MIGKTVRIEGEVTQIKQTSGPTVFTLTDE---TGAIWAAAF 248 (715)
T ss_pred ccch-----------hhhhhhhcc----cccHHH-HHh-hcCceEEEEEEEEEEEEcCCCEEEEEecC---CCceehhhh
Confidence 4211 000000000 000001 122 567665 58999998764 34677653 455555444
Q ss_pred CC------cccccCCeEEEEEEEeecccceEEEee
Q 000242 776 AG------ATVESGSVIQAAILDVAKAERLVDLSL 804 (1801)
Q Consensus 776 s~------~~~~~G~~v~~~vl~~~~~~~~v~ls~ 804 (1801)
-+ -.+++|+-|.. +=.++.+.+.+.+-+
T Consensus 249 e~aGvRAyP~IevGdiV~V-iG~V~~r~g~lQiE~ 282 (715)
T COG1107 249 EEAGVRAYPEIEVGDIVEV-IGEVTRRDGRLQIEI 282 (715)
T ss_pred ccCCcccCCCCCCCceEEE-EEEEeecCCcEEEee
Confidence 32 16888998764 334566666665543
No 358
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.11 Score=58.69 Aligned_cols=173 Identities=11% Similarity=0.063 Sum_probs=115.1
Q ss_pred HHHHHcCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000242 1542 ERLVRSSPNSSFVWIKY-MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1620 (1801)
Q Consensus 1542 er~L~~~P~s~~~W~~y-~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl 1620 (1801)
|......-++-..|.-. +.+++..++++.|.....+.. .+. ...--.+...+.. ..+.|+...+++.
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-~lE---------~~Al~VqI~lk~~--r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-NLE---------AAALNVQILLKMH--RFDLAEKELKKMQ 164 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-hHH---------HHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33333333344355444 445688899999987776622 111 1111111223333 3577888888887
Q ss_pred hcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHH
Q 000242 1621 QYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1696 (1801)
Q Consensus 1621 ~~~~~~---~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~ 1696 (1801)
+..+.. .+-.+|+.+..-.+++.+|.-+|+.+..+++..+.+.+..+.+.+.+ ++++|..+++.||...++. ++
T Consensus 165 ~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--pe 242 (299)
T KOG3081|consen 165 QIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD--PE 242 (299)
T ss_pred ccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC--HH
Confidence 776653 34455555666677889999999999999988999999899988888 9999999999999888766 57
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCC
Q 000242 1697 FISQTAILEFKNGVA-DRGRSMFEGILSEYPKR 1728 (1801)
Q Consensus 1697 ~~~~~a~le~~~g~~-e~Ar~lfe~al~~~P~~ 1728 (1801)
.+.+..-+-.-.|.. +---....++...+|..
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 777777766666644 44444555566667764
No 359
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.73 E-value=0.0051 Score=70.19 Aligned_cols=106 Identities=16% Similarity=0.059 Sum_probs=95.6
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000242 1632 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1710 (1801)
Q Consensus 1632 l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~ 1710 (1801)
-++-|.+.|+|++|...|.+++..+|.++..+.+.|..|++. ++..|+.-...|+..+.. ++++|++.++.-+.+|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHHhh
Confidence 456678899999999999999999999999999999999999 999999999999887633 46899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000242 1711 ADRGRSMFEGILSEYPKRTDLWSIYLDQE 1739 (1801)
Q Consensus 1711 ~e~Ar~lfe~al~~~P~~~dlw~~y~~le 1739 (1801)
..+|..-+|++|+..|++.++--.|+++-
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 99999999999999999999988887764
No 360
>PRK15331 chaperone protein SicA; Provisional
Probab=96.69 E-value=0.024 Score=60.06 Aligned_cols=95 Identities=5% Similarity=-0.056 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000242 1661 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1739 (1801)
Q Consensus 1661 ~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le 1739 (1801)
+..+.+|--++.. ++++|+.+|+-.....|.+ ...|+.+|..+...++++.|...|..+....++++...+..++.+
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 3445666667777 9999999999998888877 479999999999999999999999999999999888888899999
Q ss_pred HHcCChHHHHHHHHHHHh
Q 000242 1740 IRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1740 ~k~gd~e~ar~lferal~ 1757 (1801)
+..|+.+.|+..|+-++.
T Consensus 116 l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 999999999999999998
No 361
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=96.68 E-value=0.0077 Score=65.60 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=61.3
Q ss_pred CCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccc------------cCcccccCCCCEEEEEEEEEecCC-
Q 000242 1331 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV------------DNIETIYRAGEKVKVKILKVDKEK- 1397 (1801)
Q Consensus 1331 ~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~------------~~~~~~~~~Gd~V~~~Vl~id~e~- 1397 (1801)
..-.|+++.|.|+++.++|+||++++ .++++|.+.|.++.. ++-...+..|+.|++||..+..+.
T Consensus 78 rPf~gEVv~g~V~~v~~~G~~v~~Gp--~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~ 155 (176)
T PTZ00162 78 KPFKDEVLDAIVTDVNKLGFFAQAGP--LKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDAS 155 (176)
T ss_pred ecCCCCEEEEEEEEEecceEEEEeeC--eEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCC
Confidence 34579999999999999999999986 779999999975421 111356899999999998876543
Q ss_pred -CeeEEeecccccCC
Q 000242 1398 -RRISLGMKSSYFKN 1411 (1801)
Q Consensus 1398 -~ri~lslK~~~~~~ 1411 (1801)
.++-.++|..|.+.
T Consensus 156 ~~~~i~T~~~~~LG~ 170 (176)
T PTZ00162 156 NLFAIATINSDYLGP 170 (176)
T ss_pred CcEEEEEecCCCcCc
Confidence 34666888877654
No 362
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.67 E-value=0.065 Score=58.16 Aligned_cols=123 Identities=11% Similarity=-0.046 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000242 1590 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1668 (1801)
Q Consensus 1590 ~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~ 1668 (1801)
|..+......++-..|- -.-||--|.+|+...|.. .++.-++-.+...|+++.|.+.|...+...|...-+.++.+-
T Consensus 64 RA~l~fERGvlYDSlGL--~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 64 RAQLLFERGVLYDSLGL--RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHhcchhhhhhH--HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 33344444445555552 367788899999999986 777777777888999999999999999998877777777666
Q ss_pred HHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000242 1669 RLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717 (1801)
Q Consensus 1669 ~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~l 1717 (1801)
.+.-. ++.-|.+-|..-.+.+|......+|+.... +.-++.+|++-
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tn 188 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTN 188 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHH
Confidence 55555 788888888777777877754455554432 23355555543
No 363
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0014 Score=71.89 Aligned_cols=76 Identities=29% Similarity=0.517 Sum_probs=70.2
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeC-CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~-~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
..++++|-+.|+.|.+-|+||.|-. .++.|++-.||||..++....++.++|-.--+.|+.+|+++|.|.||.+..
T Consensus 14 Pev~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrrV 90 (304)
T KOG2916|consen 14 PEVEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRRV 90 (304)
T ss_pred CCcccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhccC
Confidence 4579999999999999999999852 389999999999999999999999999999999999999999999998763
No 364
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.60 E-value=0.045 Score=56.78 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChH-HHHHHHH
Q 000242 1628 VHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTA 1702 (1801)
Q Consensus 1628 v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~---~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~-~~~~~~a 1702 (1801)
.+..-+.-..+.|++.+|.+.|+.+..+||. ...+-+.++..++.. ++++|...++|-++.+|.+..+ -++...|
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3444445667889999999999999999873 456666777777888 9999999999999999998643 2444444
Q ss_pred HHHHHcCC---------------HHHHHHHHHHHHHhCCCCH
Q 000242 1703 ILEFKNGV---------------ADRGRSMFEGILSEYPKRT 1729 (1801)
Q Consensus 1703 ~le~~~g~---------------~e~Ar~lfe~al~~~P~~~ 1729 (1801)
...++... ...|...|+++++.+|++.
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 44443332 6677778888888888764
No 365
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.60 E-value=0.65 Score=54.87 Aligned_cols=218 Identities=13% Similarity=0.060 Sum_probs=158.6
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchhhHHHHHHHHH-HHHHHcCCCCH
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN-IREENEKLNIWVAYF-NLENEYGNPPE 1609 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~-~~ee~e~l~lW~a~l-~le~~~g~~~~ 1609 (1801)
++.+.++..-+++-..-|.-.-.|...+....+.|+++.|..+.+......- .+...||...-+--. .+..... +.
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda--dp 245 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA--DP 245 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC--Ch
Confidence 3355556666777777899899999999999999999999998877665322 222333322211111 1222233 56
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCHHHHHHHHHHH--H
Q 000242 1610 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRA--L 1686 (1801)
Q Consensus 1610 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ra--l 1686 (1801)
..|++....+++..|.. ..-..-+..|.+.|+.-++-.+++.+-+.+| .+.+|..|...- .-+.+..-++|+ |
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~lY~~ar---~gdta~dRlkRa~~L 321 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIALLYVRAR---SGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHHHHHHhc---CCCcHHHHHHHHHHH
Confidence 88999999999999986 6667777888999999999999999999885 788888876522 233344444443 3
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHh
Q 000242 1687 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR-LGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1687 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k-~gd~e~ar~lferal~ 1757 (1801)
.++..+ +.+..+..++.-+.-|++..||.--|.+....|. ..++.-+++.+.. .||..++|..+-+++.
T Consensus 322 ~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 322 ESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 444333 3466777777778889999999999999998885 4677778888875 4999999999999997
No 366
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=96.56 E-value=0.0039 Score=74.43 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=85.6
Q ss_pred cccccCCCeEeeEEEeecCCCeEEEeccchhhchhhcCC--CccccC--CCCCEEEEEEEEEecC-eEEEEECCCeEEEe
Q 000242 581 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHI--HPNSVVHGYVCNIIET-GCFVRFLGRLTGFA 655 (1801)
Q Consensus 581 ~~~~k~G~~i~~vl~~d~~~~~i~ls~K~~l~~~~~~~~--~~~~~~--~~G~~~~G~V~~i~~~-G~fV~f~~~~~Glv 655 (1801)
...+++||.+..-+..+.-++...-++|+.+......+. .-|+++ +.|+.+.|+|.++... ++||.+ |+..|++
T Consensus 88 ~~~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er~~i~~ey~~~~Geiv~g~V~r~~~~~~i~vdl-g~~ea~L 166 (374)
T PRK12328 88 DPSVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLEESIFEKYKKKVGKIVFGTVVRVDNEENTFIEI-DEIRAVL 166 (374)
T ss_pred CCCCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEEEEEecCCCEEEEc-CCeEEEe
Confidence 446788999984333333344455667777733222110 112333 4899999999999874 599999 5899999
Q ss_pred eCCccCcccccCcccCccCCCEEEEEEEEeeCCCC---eEEEeecccccCCCChhhHHHHHhHH
Q 000242 656 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG---RITLSLKQSCCSSTDASFMQEHFLLE 716 (1801)
Q Consensus 656 ~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~---ri~lSlk~~~~~~~~~~~~~~~~~~~ 716 (1801)
|+++.. |.+.|++||.++|.|.+|+...+ .+.||. +++.|+..+|..+
T Consensus 167 P~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSR-------t~p~~v~~Lfe~E 217 (374)
T PRK12328 167 PMKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSR-------TSPKFLEALLELE 217 (374)
T ss_pred CHHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEc-------CCHHHHHHHHHHh
Confidence 999875 56789999999999999998765 677775 3456677777643
No 367
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.014 Score=64.83 Aligned_cols=72 Identities=24% Similarity=0.283 Sum_probs=64.9
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcc----cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000242 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY----VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1315 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~----~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~ 1315 (1801)
++||.|-|+|..+...+-.|+|+.-..|.+|++++.+.. ..+.+..|.+|+.|.++|..+|+ .+.+.|++|.
T Consensus 63 ~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~-~~~~~L~~k~ 138 (239)
T COG1097 63 EVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDFLRRKFENAEKDLRPFLNVGDLVYAKVVDVDR-DGEVELTLKD 138 (239)
T ss_pred CCCCEEEEEEEEEcccceEEEcCCccceEeehhhhhcccccccccccccccccCCEEEEEEEEccC-CCceEEEeec
Confidence 589999999999999999999998899999999996654 34688899999999999999995 8899999965
No 368
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.47 E-value=0.046 Score=54.49 Aligned_cols=90 Identities=19% Similarity=0.078 Sum_probs=62.4
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCC--ChHHHHHHHHHHHHHcCCHH
Q 000242 1636 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKNGVAD 1712 (1801)
Q Consensus 1636 ~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~--~~~~~~~~~a~le~~~g~~e 1712 (1801)
....|+.+.|.+.|.+++...|..+.+|.+.++.+.-+ +.++|..-+.+|+...... ...+.+...+.++...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 34567777777777777777777777777777777666 7777777777777765332 22456666777777777777
Q ss_pred HHHHHHHHHHHhC
Q 000242 1713 RGRSMFEGILSEY 1725 (1801)
Q Consensus 1713 ~Ar~lfe~al~~~ 1725 (1801)
.||+-|+.+-+.-
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 7777777775443
No 369
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.19 Score=56.70 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----h-CHHHHHHHHH
Q 000242 1609 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQ 1683 (1801)
Q Consensus 1609 ~e~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~----~-~~~~A~~ll~ 1683 (1801)
.+.|.+...+ ....+....-.+++.+..+.+.|....++|.... .......+|+.+.. . ++..|.-+|+
T Consensus 124 ~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~ggek~qdAfyife 197 (299)
T KOG3081|consen 124 FDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGEKIQDAFYIFE 197 (299)
T ss_pred hHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4555444443 2233555555567777788888888888887653 33333334433333 2 6888888888
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhcCCCc
Q 000242 1684 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR-GLFERAISLSLPP 1762 (1801)
Q Consensus 1684 ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar-~lferal~~~~~p 1762 (1801)
.+-..+|.. +.+....|-....++++++|..+++.+|..+++.++.....+-+-...|....+. ....+.-. ..|
T Consensus 198 E~s~k~~~T--~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p 273 (299)
T KOG3081|consen 198 ELSEKTPPT--PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL--SHP 273 (299)
T ss_pred HHhcccCCC--hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCC
Confidence 887755444 4677778888888888999999999888888888888888777777677554433 33333333 455
Q ss_pred hhH
Q 000242 1763 KKM 1765 (1801)
Q Consensus 1763 k~~ 1765 (1801)
...
T Consensus 274 ~h~ 276 (299)
T KOG3081|consen 274 EHP 276 (299)
T ss_pred cch
Confidence 443
No 370
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.37 E-value=0.91 Score=59.18 Aligned_cols=221 Identities=12% Similarity=0.076 Sum_probs=140.2
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCC
Q 000242 1563 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQ 1641 (1801)
Q Consensus 1563 ~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~g~ 1641 (1801)
+..+++.+|.+...+.++..|... ...+.-+|.- .+.|.. +.|..+.+---...+. ......+-.+|.+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~---~a~vLkaLsl--~r~gk~--~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL---YAKVLKALSL--FRLGKG--DEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH---HHHHHHHHHH--HHhcCc--hhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence 355778899999999999988533 2233333333 355643 6666555433222222 3555566678999999
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC---------H
Q 000242 1642 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV---------A 1711 (1801)
Q Consensus 1642 ~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~---------~ 1711 (1801)
+++|..+|++++.+||. .+..+.|-..+.|- .+.+-.+.=-+.-+.+|++.+ -+|.-.......... .
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y-yfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY-YFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-hHHHHHHHHHHhccCCcccccchhH
Confidence 99999999999999997 77666666666665 555444444444457888764 677766655543322 3
Q ss_pred HHHHHHHHHHHHhC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000242 1712 DRGRSMFEGILSEY-PK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1789 (1801)
Q Consensus 1712 e~Ar~lfe~al~~~-P~-~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~ 1789 (1801)
.-|+.+++..+... +- ...-..-|......+|.+++|...+.+-+...+++-+. .+-.+-+++....+.+.+.-++.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~-~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANL-YLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHhcChHHHHHHH
Confidence 45777777777665 22 12224445566667888999999986666545665555 45556666666667666654444
Q ss_pred HHHH
Q 000242 1790 QKAM 1793 (1801)
Q Consensus 1790 ~rAl 1793 (1801)
.|++
T Consensus 250 ~~Ll 253 (932)
T KOG2053|consen 250 SRLL 253 (932)
T ss_pred HHHH
Confidence 4443
No 371
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.36 E-value=0.0088 Score=49.22 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000242 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1668 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~ 1668 (1801)
..|..++..|.+.|++++|.++|+++++.+|++..+|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 368888888888888888888888888888888888888875
No 372
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.36 E-value=0.023 Score=69.27 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=52.0
Q ss_pred cCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000242 1656 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTAILEFKNGVADRGRSMFEGILSE 1724 (1801)
Q Consensus 1656 ~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~-~~~~~~a~le~~~g~~e~Ar~lfe~al~~ 1724 (1801)
.|+....|++++..|... ++++|...|++||+..|.+... .+|++.|..+..+|+.++|...|+++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356777888888878777 8888888888888887776421 35777788888888888888888888776
No 373
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=96.33 E-value=0.021 Score=54.02 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=61.1
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000242 1243 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~ 1316 (1801)
++||.|-|+|+.++..+-+|+|+....|.+|..++... .+..+..|++|++|.|+|.++++ ....+||...+
T Consensus 5 ~~gD~VIG~V~~~~~~~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~-~~~~eLtc~~~ 76 (86)
T cd05790 5 AKGDHVIGIVVAKAGDFFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANR-DMEPELSCVDS 76 (86)
T ss_pred CCCCEEEEEEEEEcCCeEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCC-CCCeEEEEeCC
Confidence 58999999999999999999999889999999876543 44556779999999999999996 45688888753
No 374
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.064 Score=59.75 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=76.6
Q ss_pred CcccCCEEEEEEEEE---eCCeEEEEEccccccchhhhhhhhhhcCCCcEEEEEEEEEeeceEEEEEcCCeEEEeccccc
Q 000242 408 KFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 484 (1801)
Q Consensus 408 ~~~vG~~v~~rVl~v---~~~~i~ls~k~~l~~~~~~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~ 484 (1801)
.|..|+++.+.|... ..+.+.+- + .-..|- -+.|+++.|.|..+...|..|++.+...+++|.|++
T Consensus 29 ty~~~~~iyssv~G~~~~~~~~v~VI--p--------l~g~Yi-P~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~ 97 (239)
T COG1097 29 TYFEGGKIYSSVVGLLDVKGKLVRVI--P--------LEGRYI-PEVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDF 97 (239)
T ss_pred cEecCCEEEEEEEeEEEEeCCEEEEE--e--------CCCccc-CCCCCEEEEEEEEEcccceEEEcCCccceEeehhhh
Confidence 566788888877766 23332221 1 111231 146999999999999999999998889999999999
Q ss_pred CCCC----CCCCCCCccCCCEEEEEEEEEeCCCCeEEEEEee
Q 000242 485 GLDP----GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522 (1801)
Q Consensus 485 ~~~~----~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~ 522 (1801)
-... ..+.+..|.+|+.|.|+|..+|+ .....|+++.
T Consensus 98 ~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~-~~~~~L~~k~ 138 (239)
T COG1097 98 LRRKFENAEKDLRPFLNVGDLVYAKVVDVDR-DGEVELTLKD 138 (239)
T ss_pred hcccccccccccccccccCCEEEEEEEEccC-CCceEEEeec
Confidence 3322 24667789999999999999998 5778888854
No 375
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]
Probab=96.23 E-value=0.0042 Score=81.01 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=69.2
Q ss_pred cCCCCCEEEEEEEEEecCe---EEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000242 624 HIHPNSVVHGYVCNIIETG---CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 700 (1801)
Q Consensus 624 ~~~~G~~~~G~V~~i~~~G---~fV~f~~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~ 700 (1801)
.+..|..+.++|++++..- |-|++.+|++||+|.+++|+..+.+|+..+++||+|.|+|+++|.++=...||++.+.
T Consensus 982 t~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~sd 1061 (1299)
T KOG1856|consen 982 TFYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTSD 1061 (1299)
T ss_pred HhccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhHH
Confidence 3678999999999997765 5779999999999999999999999999999999999999999987767778887665
Q ss_pred c
Q 000242 701 C 701 (1801)
Q Consensus 701 ~ 701 (1801)
.
T Consensus 1062 l 1062 (1299)
T KOG1856|consen 1062 L 1062 (1299)
T ss_pred h
Confidence 4
No 376
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.16 Score=57.52 Aligned_cols=69 Identities=13% Similarity=0.008 Sum_probs=54.9
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1689 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1689 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
.|...........+.++++.|++|.|..-|+.+++...-++-+-+..+-.+++.++++.|..+...+++
T Consensus 138 lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 138 LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 454333577888888999999999999999999999888888878888888899999988765544443
No 377
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.0064 Score=74.09 Aligned_cols=72 Identities=28% Similarity=0.553 Sum_probs=63.7
Q ss_pred ccCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecc
Q 000242 1328 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406 (1801)
Q Consensus 1328 ~~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~ 1406 (1801)
++.++..|..+.|+|.++..||+||+|+. .+.||+|.++++.. ..|.+|+.+-+.+..+.++++.|+|....
T Consensus 116 ~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~-~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~ 187 (715)
T COG1107 116 TMEDVEAGKYYKGIVSRVEKYGVFVELNS-HVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVG 187 (715)
T ss_pred chhhcccceeeeccccchhhhcceeecCh-hhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecC
Confidence 46799999999999999999999999985 89999999998863 24789999999999999988988876544
No 378
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=96.15 E-value=0.024 Score=53.54 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=60.9
Q ss_pred CCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeeccc
Q 000242 1332 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1407 (1801)
Q Consensus 1332 ~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~~ 1407 (1801)
.++||.|-|+|+.+...+.+|.|.. ...|++|.+++... .++.+..|++||.|-|+|.++++. ..+.|+...+
T Consensus 4 P~~gD~VIG~V~~~~~~~~~VdI~s-~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~~-~~~eLtc~~~ 76 (86)
T cd05790 4 PAKGDHVIGIVVAKAGDFFKVDIGG-SEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANRD-MEPELSCVDS 76 (86)
T ss_pred CCCCCEEEEEEEEEcCCeEEEEcCC-CcceEechHHcccc-cccccccCCCCCEEEEEEEecCCC-CCeEEEEeCC
Confidence 4689999999999999999999985 68899999887543 345677899999999999999954 5678887653
No 379
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=96.13 E-value=0.02 Score=50.75 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=36.5
Q ss_pred CCcEEEEEEEEEeeceEEEEEcCCeEEEecccccCCCCCCCCCCCccCCCEEEEEEEEEeCCCCeEEEEEe
Q 000242 451 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 521 (1801)
Q Consensus 451 ~g~~~~g~V~~i~~~G~~V~~~~~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k 521 (1801)
.|++...+|+.+.++|+|++..++-.-|+|.+++. ..+++|+.|.|.|.. |. ++|+.+|++
T Consensus 1 iG~~~~L~V~~~~~~g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~VFvY~-D~-~~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEFGYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEVFVYL-DK-EGRLVATTK 61 (61)
T ss_dssp --------EEEE-SSEEEEEETT-EEEEEEGGG--------------TTSEEEEEEEE--T-TS-EEEE--
T ss_pred CCCCcceEEEEEeCCEEEEECCCCCEEEechHHcC--------CCCCCCCEEEEEEEE-CC-CCCEEEecC
Confidence 37888899999999999999877799999999985 248899999998874 66 458888864
No 380
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=96.13 E-value=0.012 Score=79.01 Aligned_cols=77 Identities=32% Similarity=0.610 Sum_probs=65.9
Q ss_pred cCCCCCCcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCC
Q 000242 1329 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1397 (1801)
Q Consensus 1329 ~~~~~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~~~~-----------~~~~~~~~~Gd~V~~~Vl~id~e~ 1397 (1801)
+..-.+|+.+.|+|.+++.||+||.|.+.+++|++|++.+.+.+. +.....|+.||.|++++.+++...
T Consensus 617 ~m~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~ 696 (706)
T COG0557 617 YMKKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDE 696 (706)
T ss_pred HHHHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEcccc
Confidence 446689999999999999999999999767999999999996432 223457999999999999999999
Q ss_pred CeeEEeec
Q 000242 1398 RRISLGMK 1405 (1801)
Q Consensus 1398 ~ri~lslK 1405 (1801)
++|.+++-
T Consensus 697 ~~i~~~~v 704 (706)
T COG0557 697 RKIDFELV 704 (706)
T ss_pred cceEEEec
Confidence 99988763
No 381
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.053 Score=61.99 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=82.2
Q ss_pred HHHh-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC
Q 000242 1670 LLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGD 1744 (1801)
Q Consensus 1670 ~~~~-~~~~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~---~dlw~~y~~le~k~gd 1744 (1801)
++.. ++..|.+.|..-++.+|... ....++-+++.++.+|+++.|-.+|.++.+.+|++ +|..+.++..+.++|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3445 89999999999999999864 34778888999999999999999999999999875 6899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCchhH
Q 000242 1745 VDLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1745 ~e~ar~lferal~~~~~pk~~ 1765 (1801)
.+.|+..|+.++. -+|+..
T Consensus 231 ~d~A~atl~qv~k--~YP~t~ 249 (262)
T COG1729 231 TDEACATLQQVIK--RYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHH--HCCCCH
Confidence 9999999999998 555543
No 382
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.11 E-value=0.06 Score=53.71 Aligned_cols=90 Identities=18% Similarity=0.099 Sum_probs=76.5
Q ss_pred HHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Q 000242 1666 RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT----DLWSIYLDQEI 1740 (1801)
Q Consensus 1666 ~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~----dlw~~y~~le~ 1740 (1801)
-+..+.+. +.+.|.+.|.+||..+|.+. .+|.+.|+.+.-+|+.+.|..-+++++.....+. +.+.+-+-+|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERA--SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccch--HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 45556666 89999999999999999984 8999999999999999999999999998764433 24555667888
Q ss_pred HcCChHHHHHHHHHHHh
Q 000242 1741 RLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1741 k~gd~e~ar~lferal~ 1757 (1801)
..|+-+.||.-|++|-.
T Consensus 127 l~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQ 143 (175)
T ss_pred HhCchHHHHHhHHHHHH
Confidence 99999999999999998
No 383
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.11 E-value=0.077 Score=64.92 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHh-CHHHHHHHHHHHHHh
Q 000242 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV---WLRRVQRLLKQ-QQEGVQAVVQRALLS 1688 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~---w~~~a~~~~~~-~~~~A~~ll~ralk~ 1688 (1801)
..|+.++..|...|++++|...|++++...|++..+ |++++.+|..+ ++++|.+.|++|++.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998865 99999999999 999999999999986
No 384
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=96.10 E-value=0.012 Score=77.34 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=58.4
Q ss_pred CC--CcEEEEEEEEEeeceEEEEEeCCceeEEeeccccCc--c-cc--cC-----c--ccccCCCCEEEEEEEEEecCCC
Q 000242 1333 HV--GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE--D-HV--DN-----I--ETIYRAGEKVKVKILKVDKEKR 1398 (1801)
Q Consensus 1333 ~~--G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~sel~~--~-~~--~~-----~--~~~~~~Gd~V~~~Vl~id~e~~ 1398 (1801)
++ |+.+.|.|..++.+|+||+|...++.|++|.+.+.+ + +. .+ + ...|+.||.|+++|.++|.+++
T Consensus 554 ~~g~~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~ 633 (639)
T TIGR02062 554 KAAKNTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETR 633 (639)
T ss_pred ccCCCcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccC
Confidence 45 458999999999999999998778999999999975 2 21 11 1 1369999999999999999999
Q ss_pred eeEEe
Q 000242 1399 RISLG 1403 (1801)
Q Consensus 1399 ri~ls 1403 (1801)
+|.+.
T Consensus 634 ~i~~~ 638 (639)
T TIGR02062 634 SIIAR 638 (639)
T ss_pred cEeee
Confidence 98763
No 385
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.09 E-value=0.042 Score=58.72 Aligned_cols=92 Identities=13% Similarity=-0.008 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-C----------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-
Q 000242 1642 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q----------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG- 1709 (1801)
Q Consensus 1642 ~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~----------~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g- 1709 (1801)
++.|++.++....+.|.+.+.+++++..+++. + +++|..-|+.||...|... .++..++..+..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHh
Confidence 46788888888888888888888888888766 3 4567777778888888874 56666666655332
Q ss_pred ----------CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000242 1710 ----------VADRGRSMFEGILSEYPKRTDLWSIY 1735 (1801)
Q Consensus 1710 ----------~~e~Ar~lfe~al~~~P~~~dlw~~y 1735 (1801)
-+++|...|++|....|.+...+..+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 26778888888888899886555543
No 386
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.05 E-value=0.47 Score=57.37 Aligned_cols=121 Identities=16% Similarity=0.129 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hcCC---cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-C-
Q 000242 1550 NSSFVWIKYMAFMLSMADVEKARSIAERALQ-TINI---REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-C- 1623 (1801)
Q Consensus 1550 ~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~-~i~~---~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~-~- 1623 (1801)
+++....--..++...|++.+|.++.-+.-- ..+. ..+--+-..|..+.-...+.+.+ ..+...|.+|++. +
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y--~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY--QASSVLFLKALRNSCS 315 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH--HHHHHHHHHHHHHHHH
Confidence 4555555556666777888888776643210 0000 01111224566555555666744 7888899999961 1
Q ss_pred -------C----------CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000242 1624 -------D----------PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1672 (1801)
Q Consensus 1624 -------~----------~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~ 1672 (1801)
+ +..+.+..+-.|...|++-.|.+.|.++++.|..++.+|+++|...+-
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1 127788888899999999999999999999999999999999998764
No 387
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.79 Score=50.82 Aligned_cols=130 Identities=12% Similarity=0.029 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHhCCCCC----h
Q 000242 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHK----H 1694 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~------~~~~~w~~~a~~~~~~--~~~~A~~ll~ralk~~p~~~----~ 1694 (1801)
+-|....+.|.+. +.++|.+.+++++..|- -..+.+..++.++..- ++++|...|+.|-..+.... .
T Consensus 75 t~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 75 TTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 3344444444333 55555555555554442 1223333455544444 56666666666665553321 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHH------HHHHHHHcCChHHHHHHHHHHHh
Q 000242 1695 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-WSI------YLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1695 ~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dl-w~~------y~~le~k~gd~e~ar~lferal~ 1757 (1801)
-+.+++.|++-.+.+++.+|..+||++.+..-.+.-+ |.. -+..++-..|.-.++..+++-..
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 2566666666666677777777777766554443332 322 12222233454455555555444
No 388
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.03 E-value=0.0095 Score=45.14 Aligned_cols=32 Identities=34% Similarity=0.733 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000242 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1740 (1801)
Q Consensus 1709 g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~ 1740 (1801)
|+.++||.+|++++...|.+.++|..|++++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 46778888888888888888888888888764
No 389
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.02 E-value=0.36 Score=53.98 Aligned_cols=205 Identities=13% Similarity=0.239 Sum_probs=129.1
Q ss_pred CCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---CcchhhH-HHHHHHHHHHHHHcC
Q 000242 1534 APRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTIN---IREENEK-LNIWVAYFNLENEYG 1605 (1801)
Q Consensus 1534 ~~~a~~~fer~L~~~P~s----~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~---~~ee~e~-l~lW~a~l~le~~~g 1605 (1801)
..+|...|++.|...|.. ..+..+.+.....++++++..+.|.+.|.-+. .+.-.|+ .|.-+.|+.-- .
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS---~ 119 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS---K 119 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh---h
Confidence 446677888888777653 34445667777889999999999988875332 1222222 34555555532 2
Q ss_pred CCCHHHHHHHHHHHHh---cCCCHHHHH----HHHHHHHHhCChHHHHHHHHHHHHhcC------------CCHHHHHHH
Q 000242 1606 NPPEEAVVKVFQRALQ---YCDPKKVHL----ALLGLYERTEQNKLADELLYKMIKKFK------------HSCKVWLRR 1666 (1801)
Q Consensus 1606 ~~~~e~a~~vferAl~---~~~~~~v~~----~l~~i~~~~g~~~~A~~~~~~~~k~~~------------~~~~~w~~~ 1666 (1801)
..+-....|+..+. ......+|+ .++.+|...+.+-+...++.++-..+. +-.++|..-
T Consensus 120 --~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 120 --NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred --hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 23444555554443 333335554 577777766666666555555443321 335566666
Q ss_pred HHHHHHh-CHHHHHHHHHHHHHhCCCCChHH---HHHHH-HHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH--HHHH
Q 000242 1667 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK---FISQT-AILEFKNGVADRGRSMFEGILSEY-----PKRTD--LWSI 1734 (1801)
Q Consensus 1667 a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~---~~~~~-a~le~~~g~~e~Ar~lfe~al~~~-----P~~~d--lw~~ 1734 (1801)
++.+..+ +-.+...+|++||..-..-.|+- +...+ +.++.+.|+++.|.+-|=.|++.+ |.+.. -+..
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 7777777 77888899999987665555532 22222 247788899999999999999886 44444 3667
Q ss_pred HHHHHHHcC
Q 000242 1735 YLDQEIRLG 1743 (1801)
Q Consensus 1735 y~~le~k~g 1743 (1801)
++.|+++.|
T Consensus 278 LANMLmkS~ 286 (440)
T KOG1464|consen 278 LANMLMKSG 286 (440)
T ss_pred HHHHHHHcC
Confidence 788888754
No 390
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=95.99 E-value=0.015 Score=72.09 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=57.4
Q ss_pred CCCCCcEEEEEEEEEeec--eEEEEEeCCceeEEeeccccCcc------------cccCcccccCCCCEEEEEEEEEecC
Q 000242 1331 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSED------------HVDNIETIYRAGEKVKVKILKVDKE 1396 (1801)
Q Consensus 1331 ~~~~G~~v~G~V~~v~~~--G~fV~l~~~~v~gl~~~sel~~~------------~~~~~~~~~~~Gd~V~~~Vl~id~e 1396 (1801)
...+|++|.|+|+++.++ |+||.|+. +..|++|++++.+. ...+..+.+++||.|.|.|.+-...
T Consensus 22 ~~~vGnIY~GrV~~i~p~l~aAFVdiG~-~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~Ke~~~ 100 (414)
T TIGR00757 22 RQLKGNIYKGRVTRILPSLQAAFVDIGL-EKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVKEPRG 100 (414)
T ss_pred cCCCCCEEEEEEeeecCCCceEEEEcCC-CceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEeeCCcC
Confidence 456899999999999999 99999986 88999999998653 2334566799999999999984433
Q ss_pred CCeeEEee
Q 000242 1397 KRRISLGM 1404 (1801)
Q Consensus 1397 ~~ri~lsl 1404 (1801)
.+.-.++.
T Consensus 101 ~Kgp~lT~ 108 (414)
T TIGR00757 101 NKGARLTT 108 (414)
T ss_pred CCCCeEEE
Confidence 44444443
No 391
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=95.98 E-value=0.027 Score=61.45 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=56.8
Q ss_pred CCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCc------------ccCccCCCEEEEEEEEeeCC--CCeE
Q 000242 627 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL------------SKTYYVGQSVRSNILDVNSE--TGRI 692 (1801)
Q Consensus 627 ~G~~~~G~V~~i~~~G~fV~f~~~~~Glv~~s~~s~~~~~~~------------~~~~~~Gq~V~~~V~~vd~~--~~ri 692 (1801)
.|+++.|.|++++++|+||++ |.+.+|+|.+.|.++..-++ ...++.|+.|++||..+.-+ +-+.
T Consensus 81 ~gEVv~g~V~~v~~~G~~v~~-Gp~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~~~~ 159 (176)
T PTZ00162 81 KDEVLDAIVTDVNKLGFFAQA-GPLKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDASNLFA 159 (176)
T ss_pred CCCEEEEEEEEEecceEEEEe-eCeEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCCCcEE
Confidence 699999999999999999999 78999999999975322111 23488999999999877643 3456
Q ss_pred EEeecccc
Q 000242 693 TLSLKQSC 700 (1801)
Q Consensus 693 ~lSlk~~~ 700 (1801)
..|||+.-
T Consensus 160 i~T~~~~~ 167 (176)
T PTZ00162 160 IATINSDY 167 (176)
T ss_pred EEEecCCC
Confidence 67777653
No 392
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.96 E-value=0.27 Score=53.52 Aligned_cols=154 Identities=13% Similarity=0.016 Sum_probs=111.9
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000242 1631 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1709 (1801)
Q Consensus 1631 ~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g 1709 (1801)
..+.+|...|-..-|+--|.+++...|+.++++.-++-++... +++.|.+.|...++.+|... -+..+.+..++--|
T Consensus 70 ERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--Ya~lNRgi~~YY~g 147 (297)
T COG4785 70 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGIALYYGG 147 (297)
T ss_pred HhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch--HHHhccceeeeecC
Confidence 3346777778888999999999999999999999999999999 99999999999999999985 34455555555568
Q ss_pred CHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCChHHHH-HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000242 1710 VADRGRSMFEGILSEYPKRTD--LWSIYLDQEIRLGDVDLIR-GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1786 (1801)
Q Consensus 1710 ~~e~Ar~lfe~al~~~P~~~d--lw~~y~~le~k~gd~e~ar-~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~ 1786 (1801)
++.-|..-|-..-+.+|+++- +|..+... .-++.+|+ .+.+|+-. ... ..|--++-- -..|.. +.+
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~---k~dP~~A~tnL~qR~~~--~d~----e~WG~~iV~-~yLgki-S~e 216 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ---KLDPKQAKTNLKQRAEK--SDK----EQWGWNIVE-FYLGKI-SEE 216 (297)
T ss_pred chHhhHHHHHHHHhcCCCChHHHHHHHHHHh---hCCHHHHHHHHHHHHHh--ccH----hhhhHHHHH-HHHhhc-cHH
Confidence 999999999999999999865 88876543 33555665 56677765 332 455544421 112222 234
Q ss_pred HHHHHHHHHHH
Q 000242 1787 YVKQKAMEYVE 1797 (1801)
Q Consensus 1787 ~v~~rAl~~v~ 1797 (1801)
.+++|+.+..+
T Consensus 217 ~l~~~~~a~a~ 227 (297)
T COG4785 217 TLMERLKADAT 227 (297)
T ss_pred HHHHHHHhhcc
Confidence 46666655544
No 393
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=95.95 E-value=0.026 Score=50.07 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=36.6
Q ss_pred CCCeEEEEEEEEecCcEEEEEEEcCceeEEEecccccCcccccccccccccCCCeEeeEEEeecCCCeEEEecc
Q 000242 535 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 608 (1801)
Q Consensus 535 ~G~iv~g~V~~v~~~g~~V~l~~~~~~~g~i~~~~lsd~~~~~~~~~~~~k~G~~i~~vl~~d~~~~~i~ls~K 608 (1801)
+|++.+.+|.++++.|+++.. +++-+-++|..+++. .+++||++...+..|++. ++..|+|
T Consensus 1 iG~~~~L~V~~~~~~g~fL~~--~~~~~vlLp~~e~~~----------~~~~Gd~v~VFvY~D~~~-rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEFGYFLDD--GEGKEVLLPKSEVPE----------PLKVGDEVEVFVYLDKEG-RLVATTK 61 (61)
T ss_dssp --------EEEE-SSEEEEEE--TT-EEEEEEGGG----------------TTSEEEEEEEE-TTS--EEEE--
T ss_pred CCCCcceEEEEEeCCEEEEEC--CCCCEEEechHHcCC----------CCCCCCEEEEEEEECCCC-CEEEecC
Confidence 589999999999999999987 667999999888752 689999999999999887 5566654
No 394
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]
Probab=95.95 E-value=0.0072 Score=78.97 Aligned_cols=80 Identities=29% Similarity=0.358 Sum_probs=72.6
Q ss_pred ccCCCCCEEEEEEEEEeece---EEEEeCCCcEEEEEcccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000242 1240 EDLSPNMIVQGYVKNVTSKG---CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1316 (1801)
Q Consensus 1240 ~~l~~G~~v~G~V~~v~~~G---~fV~l~~~v~g~v~~s~lsd~~~~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~ 1316 (1801)
+.+.+|.+|.+.|++|+..- +-|.+..|++|+++.+++|+..+.+|...+++||.|.|+|+++|.++-.+.||+|.+
T Consensus 981 et~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~s 1060 (1299)
T KOG1856|consen 981 ETFYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTS 1060 (1299)
T ss_pred hHhccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhH
Confidence 44789999999999998754 567889999999999999999999999999999999999999999999999999987
Q ss_pred ccc
Q 000242 1317 DSR 1319 (1801)
Q Consensus 1317 ~~~ 1319 (1801)
...
T Consensus 1061 dlk 1063 (1299)
T KOG1856|consen 1061 DLK 1063 (1299)
T ss_pred Hhh
Confidence 653
No 395
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.95 E-value=0.097 Score=53.40 Aligned_cols=106 Identities=15% Similarity=0.235 Sum_probs=67.6
Q ss_pred HHHHHHHH-HhCCCCChHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCC
Q 000242 1679 QAVVQRAL-LSLPRHKHIKFISQTAILEFK---NG-VADRGRSMFEGILSEY---------PKRTDLWSIYLDQEIRLGD 1744 (1801)
Q Consensus 1679 ~~ll~ral-k~~p~~~~~~~~~~~a~le~~---~g-~~e~Ar~lfe~al~~~---------P~~~dlw~~y~~le~k~gd 1744 (1801)
++.|+..+ .......-+..|..|..+..+ .| .-..-..+++++++.+ |.-..+|..|+++.
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~----- 79 (125)
T smart00777 5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC----- 79 (125)
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc-----
Confidence 44444444 323333334566666655442 11 2233455555555443 33345899999873
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000242 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1791 (1801)
Q Consensus 1745 ~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~r 1791 (1801)
+..+.+|..+.....-.+.+ .+|..|..+.+..|++..|..+|++
T Consensus 80 -~dp~~if~~L~~~~IG~~~A-lfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 -DEPRELFQFLYSKGIGTKLA-LFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred -CCHHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 33677888888877776667 7999999999999999999999875
No 396
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.94 E-value=0.061 Score=57.66 Aligned_cols=93 Identities=20% Similarity=0.055 Sum_probs=52.1
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000242 1598 FNLENEYGNPPEEAVVKVFQRALQYCDPK------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1671 (1801)
Q Consensus 1598 l~le~~~g~~~~e~a~~vferAl~~~~~~------~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~ 1671 (1801)
.|-....| +.+.|..-|.+||..||+. -+|...+..+.+.++.+.|..-..+++...|...++..+.|..|.
T Consensus 102 GN~~F~ng--dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNG--DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcc--cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 34344555 4577777777777777752 344445555555555555555555555555555555555555554
Q ss_pred Hh-CHHHHHHHHHHHHHhCCCC
Q 000242 1672 KQ-QQEGVQAVVQRALLSLPRH 1692 (1801)
Q Consensus 1672 ~~-~~~~A~~ll~ralk~~p~~ 1692 (1801)
+. ++++|..-|++.+..+|..
T Consensus 180 k~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcch
Confidence 44 5555555555555555544
No 397
>PRK05054 exoribonuclease II; Provisional
Probab=95.94 E-value=0.019 Score=75.70 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=58.1
Q ss_pred CCC--CEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCcc---cc--cC-------cccCccCCCEEEEEEEEeeCCCC
Q 000242 626 HPN--SVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDG---QR--AD-------LSKTYYVGQSVRSNILDVNSETG 690 (1801)
Q Consensus 626 ~~G--~~~~G~V~~i~~~G~fV~f~~-~~~Glv~~s~~s~~---~~--~~-------~~~~~~~Gq~V~~~V~~vd~~~~ 690 (1801)
++| +.+.|.|++++++|.||++.+ ++.||+|.+.+.+. +. .+ -...|++||.|+++|.++|.+++
T Consensus 558 ~~G~~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~ 637 (644)
T PRK05054 558 KAGTDTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETR 637 (644)
T ss_pred ccCCCeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccC
Confidence 455 499999999999999999965 79999999998652 21 11 02469999999999999999999
Q ss_pred eEEEee
Q 000242 691 RITLSL 696 (1801)
Q Consensus 691 ri~lSl 696 (1801)
++.+.+
T Consensus 638 ~i~~~~ 643 (644)
T PRK05054 638 SIIARP 643 (644)
T ss_pred eEEEEE
Confidence 998764
No 398
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.92 E-value=1.4 Score=50.37 Aligned_cols=157 Identities=13% Similarity=0.022 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000242 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1702 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~---~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a 1702 (1801)
..|..-+.-..+.|++++|...|+++.+++| -..++.+..+-.+.+. +++.|....+|-++.+|.+.. .-|..|.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHH
Confidence 4555555667889999999999999999986 4578888888888888 999999999999999999865 3344444
Q ss_pred HHHHH-------cCC---HHHHHHHHHHHHHhCCCCH---H-------HH-------HHHHHHHHHcCChHHHHHHHHHH
Q 000242 1703 ILEFK-------NGV---ADRGRSMFEGILSEYPKRT---D-------LW-------SIYLDQEIRLGDVDLIRGLFERA 1755 (1801)
Q Consensus 1703 ~le~~-------~g~---~e~Ar~lfe~al~~~P~~~---d-------lw-------~~y~~le~k~gd~e~ar~lfera 1755 (1801)
..+.. ..| ..+|..-|+..++.+|++. | +- +.-+.++.+.|.+..|..-|+++
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 43321 123 3456666777899999852 1 11 12245566789999999999999
Q ss_pred HhcCCCchhH--HHHHHHHHHHHHHcCCHHHHH
Q 000242 1756 ISLSLPPKKM--KFLFKKYLEYEKSVGEEERIE 1786 (1801)
Q Consensus 1756 l~~~~~pk~~--k~lw~~yl~~E~~~G~~e~a~ 1786 (1801)
+. .+|+.. ..-...|.......|-.+.|.
T Consensus 194 ~e--~y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 194 LE--NYPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred Hh--ccccccchHHHHHHHHHHHHHhCChHHHH
Confidence 98 233322 122233333344466555443
No 399
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.84 E-value=0.01 Score=45.76 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=31.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 000242 1541 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1573 (1801)
Q Consensus 1541 fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~ 1573 (1801)
|+++|..+|+++.+|..|+.++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999973
No 400
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.79 E-value=0.71 Score=53.98 Aligned_cols=161 Identities=15% Similarity=0.077 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------CC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Q 000242 1591 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------DP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFK 1657 (1801)
Q Consensus 1591 l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~------~~-------~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~ 1657 (1801)
...+.+|+|++..+.. ..-|.+++++. |. ...+..+++.+.-.+.++++.+.|+.+.+.-.
T Consensus 80 ~~~~ea~lnlar~~e~------l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~ 153 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEK------LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH 153 (518)
T ss_pred HHHHHHHHHHHHHHHH------HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 4567888888664441 22233344332 21 26777788888888999999999999997532
Q ss_pred ------CCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1658 ------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR--------HKHIKFISQTAILEFKNGVADRGRSMFEGIL 1722 (1801)
Q Consensus 1658 ------~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~--------~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al 1722 (1801)
-...++..++.++.+. ++++|.-+..+|+..... ..|....+.+|-.+..+|+.-.|.+..+.+.
T Consensus 154 ~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 154 NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 1256788899988888 999998888888765422 1233556666667778899888999988887
Q ss_pred HhC---CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1723 SEY---PKR---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1723 ~~~---P~~---~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
+.. .++ ..-...++|.|...||.++|..-||.|..
T Consensus 234 klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 234 KLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 652 232 23467789999999999999999999886
No 401
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.73 E-value=4.3 Score=48.34 Aligned_cols=228 Identities=14% Similarity=0.130 Sum_probs=139.5
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCc--chhhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC--------------
Q 000242 1563 LSMADVEKARSIAERALQTINIR--EENEKL-NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------------- 1625 (1801)
Q Consensus 1563 ~~~~e~d~Ar~~~eral~~i~~~--ee~e~l-~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~-------------- 1625 (1801)
..+|+++.|...|.|+-...+.. ...+.+ .+......-....+. +.+.|...++||..+.+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~-~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKD-KYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 45689999999999988654211 111111 222222222233331 348889999999988421
Q ss_pred -HHHHHHHHHHHHHhCCh---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCC-CCChHHHHH
Q 000242 1626 -KKVHLALLGLYERTEQN---KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP-RHKHIKFIS 1699 (1801)
Q Consensus 1626 -~~v~~~l~~i~~~~g~~---~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p-~~~~~~~~~ 1699 (1801)
..+...++..|...+.+ ++|..+.+.+.+.+++.+.++.....++.+. +.+++.+.+.+++...+ .........
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 15666777778776664 4567777778888899999998888888888 99999999999999876 333345555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-----HcC---C---hHHHHHHHHHH---HhcCCCch
Q 000242 1700 QTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEI-----RLG---D---VDLIRGLFERA---ISLSLPPK 1763 (1801)
Q Consensus 1700 ~~a~le~~~g~~e~Ar~lfe~al~~--~P~~~dlw~~y~~le~-----k~g---d---~e~ar~lfera---l~~~~~pk 1763 (1801)
.....+..... ..|...+..++.. .|...+ |..-+-+.. +.+ + ++.+..+++++ ....+.++
T Consensus 163 ~~i~~l~~~~~-~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 163 HHIKQLAEKSP-ELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHhhCc-HHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 55554555444 4555555555433 344433 544333222 111 1 33344445533 22344444
Q ss_pred hHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000242 1764 KMK----FLFKKYLEYEKSVGEEERIEYVKQKAME 1794 (1801)
Q Consensus 1764 ~~k----~lw~~yl~~E~~~G~~e~a~~v~~rAl~ 1794 (1801)
.+. .+|+.--.. .+.+++..|...|+-|+.
T Consensus 241 ~~~a~~~LLW~~~~~~-~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKH-YKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHH
Confidence 321 468775554 458899999999998874
No 402
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.70 E-value=0.94 Score=53.01 Aligned_cols=242 Identities=14% Similarity=0.049 Sum_probs=140.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HH
Q 000242 1555 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KK 1627 (1801)
Q Consensus 1555 W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~-------~~ 1627 (1801)
+.+++..+....++.++..+-...+..-..+...........+.+.+..++ ..+++.+.|+.|+++... ..
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls--~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLS--VFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHH--HHHHHHHHHHHHHHHhhccCCceeeee
Confidence 344444445555566666655555532222211111223333444444555 458899999999987643 18
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcC-----CC-----HHHHHHHHHHHHHh-CHHHHHHHHHHHHHh----CCCC
Q 000242 1628 VHLALLGLYERTEQNKLADELLYKMIKKFK-----HS-----CKVWLRRVQRLLKQ-QQEGVQAVVQRALLS----LPRH 1692 (1801)
Q Consensus 1628 v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~-----~~-----~~~w~~~a~~~~~~-~~~~A~~ll~ralk~----~p~~ 1692 (1801)
++..++.+|.+..++++|.-...++..... +- .-+.+.++..+... ..-.|.+..+.|.+. -...
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 999999999999999999888777765432 11 11223333334344 566666666666553 2222
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCH---HHHHHHHHHHH--H---cCChHHHHHHHHHHHhc--C
Q 000242 1693 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYP---KRT---DLWSIYLDQEI--R---LGDVDLIRGLFERAISL--S 1759 (1801)
Q Consensus 1693 ~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P---~~~---dlw~~y~~le~--k---~gd~e~ar~lferal~~--~ 1759 (1801)
.|...+.-+|.+|...|+.|+|..-||.|+.... ++. .+..-.+.... + .+.--+|.+.-+|+++. .
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 3456778899999999999999999999976542 221 11111111111 1 11113455555565541 1
Q ss_pred CCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000242 1760 LPPKKM-KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798 (1801)
Q Consensus 1760 ~~pk~~-k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~~ 1798 (1801)
...|.. ..+.-+...+++..|..++-...+.||-+.++.
T Consensus 324 IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e 363 (518)
T KOG1941|consen 324 IGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEE 363 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 111111 123445556677788888888889998888775
No 403
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=95.69 E-value=0.034 Score=66.69 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=75.5
Q ss_pred CcccCCEEEEEEEEEe-CCeEEEEEccccccch-----hhhhhhhhhcCCCcEEEEEEEEEee-ceEEEEEcCCeEEEec
Q 000242 408 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKSK-----LAILSSYAEATDRLITHGWITKIEK-HGCFVRFYNGVQGFAP 480 (1801)
Q Consensus 408 ~~~vG~~v~~rVl~v~-~~~i~ls~k~~l~~~~-----~~~~~~~~~~~~g~~~~g~V~~i~~-~G~~V~~~~~v~g~vp 480 (1801)
.+++|+.++..+---+ .+...-|.|+.+...- ...+..|.+ +.|+++.|+|.++.. .++||++ +++.|++|
T Consensus 90 ~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er~~i~~ey~~-~~Geiv~g~V~r~~~~~~i~vdl-g~~ea~LP 167 (374)
T PRK12328 90 SVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLEESIFEKYKK-KVGKIVFGTVVRVDNEENTFIEI-DEIRAVLP 167 (374)
T ss_pred CCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEecCCCEEEEc-CCeEEEeC
Confidence 5899999987553222 2233334444442211 112233332 479999999999986 4599999 68999999
Q ss_pred ccccCCCCCCCCCCCccCCCEEEEEEEEEeCCCC---eEEEEEee
Q 000242 481 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR---RINLSFMM 522 (1801)
Q Consensus 481 ~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~---~l~lS~k~ 522 (1801)
.++.. |.+.|++|+.++|.|.+++...+ .+.||...
T Consensus 168 ~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSRt~ 206 (374)
T PRK12328 168 MKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSRTS 206 (374)
T ss_pred HHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEcCC
Confidence 99884 56789999999999999998765 78888753
No 404
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.013 Score=64.66 Aligned_cols=75 Identities=25% Similarity=0.338 Sum_probs=70.3
Q ss_pred CCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000242 627 PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 701 (1801)
Q Consensus 627 ~G~~~~G~V~~i~~~G~fV~f~--~~~~Glv~~s~~s~~~~~~~~~~~~~Gq~V~~~V~~vd~~~~ri~lSlk~~~~ 701 (1801)
+++.+.+.|.+|.+.|++|.+. |++.|++-.|++|..++...+...++|-+=.|.|+.||.++|=|-||.+...+
T Consensus 16 v~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrrVs~ 92 (304)
T KOG2916|consen 16 VEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRRVSP 92 (304)
T ss_pred cccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhccCCH
Confidence 6899999999999999999985 79999999999999999999999999999999999999999999999876543
No 405
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=95.61 E-value=0.03 Score=52.42 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=41.6
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC------------------CCcEEEEEcccCCCcccC--CccccCCCCcEEEEEEEEE
Q 000242 1243 SPNMIVQGYVKNVTSKGCFIMLS------------------RKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSV 1302 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~~G~fV~l~------------------~~v~g~v~~s~lsd~~~~--~~~~~f~~G~~V~~~Vl~v 1302 (1801)
++|++|.|+|+++++.-++++|- ....|.++.+|+...... ++.+.|++|+.|.++|+++
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 58999999999999998888652 246789999998876654 3678899999999999874
No 406
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=95.58 E-value=0.025 Score=70.11 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=50.3
Q ss_pred CCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEEcccCCCcc------------cCCccccCCCCcEEEEEEEE
Q 000242 1242 LSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDGY------------VESPEKEFPIGKLVAGRVLS 1301 (1801)
Q Consensus 1242 l~~G~~v~G~V~~v~~~--G~fV~l~~~v~g~v~~s~lsd~~------------~~~~~~~f~~G~~V~~~Vl~ 1301 (1801)
..+|+++.|+|+++.++ |+||++|.+..||+|++|+.+.+ ..+..+.+++||.|-|.|+.
T Consensus 23 ~~vGnIY~GrV~~i~p~l~aAFVdiG~~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~K 96 (414)
T TIGR00757 23 QLKGNIYKGRVTRILPSLQAAFVDIGLEKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVK 96 (414)
T ss_pred CCCCCEEEEEEeeecCCCceEEEEcCCCceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEee
Confidence 45899999999999998 99999999999999999997532 22344568899999998865
No 407
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.41 E-value=1.9 Score=53.12 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----
Q 000242 1657 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSE-YPKR---- 1728 (1801)
Q Consensus 1657 ~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~--~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~-~P~~---- 1728 (1801)
......|+.++....+. .++.|...+.++.+..+... .+.+.+.+|+++...|+..+|...++..+.. ..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 35678899999988888 99999999999887653321 3578888999999999999999998888872 1111
Q ss_pred -----------------------------HHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000242 1729 -----------------------------TDLWSIYLDQEIRL------GDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1773 (1801)
Q Consensus 1729 -----------------------------~dlw~~y~~le~k~------gd~e~ar~lferal~~~~~pk~~k~lw~~yl 1773 (1801)
..++..++.+.... ++.+.+...|..|+. +.|...+ .|..|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k-~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEK-AWHSWA 299 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHH-HHHHHH
Confidence 22466666666666 788889999999998 7777774 788787
Q ss_pred HHHHH
Q 000242 1774 EYEKS 1778 (1801)
Q Consensus 1774 ~~E~~ 1778 (1801)
.+..+
T Consensus 300 ~~~~~ 304 (352)
T PF02259_consen 300 LFNDK 304 (352)
T ss_pred HHHHH
Confidence 76443
No 408
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=95.39 E-value=0.12 Score=55.13 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=76.4
Q ss_pred CCcccCCEEEEEEEEE---eCCeEEEEEccccccchhhhhhhhhhcCCCcEEEEEEEEEeeceEEEEEcC----------
Q 000242 407 KKFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN---------- 473 (1801)
Q Consensus 407 ~~~~vG~~v~~rVl~v---~~~~i~ls~k~~l~~~~~~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~~---------- 473 (1801)
..|..|..|.|-+..+ +.+....+.|+.... +.-.++|+++-|.|+++....+.|++.+
T Consensus 25 gt~~~~g~i~Aa~~G~~~~d~~n~~~~V~p~~~~--------~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~ 96 (188)
T COG1096 25 GTYEEGGEIRAAATGVVRRDDKNRVISVKPGKKT--------PPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELAT 96 (188)
T ss_pred CeEeECCEEEEeecccEEEcccceEEEeccCCCC--------CCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCC
Confidence 3456677777766655 445566666543221 2224679999999999999999888752
Q ss_pred CeEEEecccccCCCCCCCCCCCccCCCEEEEEEEEEeCCCCeEEEEEee
Q 000242 474 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 522 (1801)
Q Consensus 474 ~v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~~~l~lS~k~ 522 (1801)
-..|-+|.|+++.....+.++.|++|+.|+++|++.- ..+.||.+-
T Consensus 97 ~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~~~Lst~~ 142 (188)
T COG1096 97 SGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DPIQLSTKG 142 (188)
T ss_pred CceeeEEEEecccccccccccccccccEEEEEEEecC---CCeEEEecC
Confidence 1457899999987777788899999999999999963 457777753
No 409
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.28 E-value=1.1 Score=55.26 Aligned_cols=173 Identities=18% Similarity=0.180 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Q 000242 1609 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1686 (1801)
Q Consensus 1609 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ral 1686 (1801)
.++-.+..++|++.+|.- ..|+-++. +.+....+|.++|+++++.-. ..++. .......-+-.++
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE-----------~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE-----------ASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH-----------Hhhchhhhhhcccchhhhh
Confidence 466677778888877764 66665543 345556788888888876321 11111 1111100011111
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchh
Q 000242 1687 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1764 (1801)
Q Consensus 1687 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~--~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~ 1764 (1801)
..-..+..+-+-.++|....+.|+.++|.++|+.+++.+|. ...+...++..+...+.++.+..++.+--. ..-|+.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD-i~lpkS 329 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD-ISLPKS 329 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc-ccCCch
Confidence 11111222334456677777899999999999999998886 344777788888889999999999988643 223455
Q ss_pred HHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 000242 1765 MKFLFKKYLEYEKSVGE---------------EERIEYVKQKAMEY 1795 (1801)
Q Consensus 1765 ~k~lw~~yl~~E~~~G~---------------~e~a~~v~~rAl~~ 1795 (1801)
+-..|.+-+.--+..|| ...|.+...||.++
T Consensus 330 Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 330 ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 54556665543333333 22345677777765
No 410
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.13 E-value=0.049 Score=50.98 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1696 KFISQTAILEFKNGVADRGRSMFEGILSE---YPK-R---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1696 ~~~~~~a~le~~~g~~e~Ar~lfe~al~~---~P~-~---~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
.++..+|.+++..|++++|.+.|+++++. .+. + ...+..++.++...|++++|...|++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56777777888888888888888888744 332 2 23466677777778888888888887775
No 411
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=94.93 E-value=0.061 Score=70.96 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=55.3
Q ss_pred CCEEEEEEEEEecCeEEEEEC-CCeEEEeeCCccCc--c-c--ccCc-------ccCccCCCEEEEEEEEeeCCCCeEEE
Q 000242 628 NSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVD--G-Q--RADL-------SKTYYVGQSVRSNILDVNSETGRITL 694 (1801)
Q Consensus 628 G~~~~G~V~~i~~~G~fV~f~-~~~~Glv~~s~~s~--~-~--~~~~-------~~~~~~Gq~V~~~V~~vd~~~~ri~l 694 (1801)
|..+.|.|+.++++|+||++. +++.||+|.+.+.+ . + ..+. ...|++||.|+++|.++|.+++++.+
T Consensus 558 ~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~~i~~ 637 (639)
T TIGR02062 558 NTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETRSIIA 637 (639)
T ss_pred CcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccCcEee
Confidence 448999999999999999995 68999999999965 2 2 1111 12599999999999999999998876
Q ss_pred e
Q 000242 695 S 695 (1801)
Q Consensus 695 S 695 (1801)
.
T Consensus 638 ~ 638 (639)
T TIGR02062 638 R 638 (639)
T ss_pred e
Confidence 3
No 412
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.89 E-value=0.37 Score=51.23 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=74.7
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000242 1635 LYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1708 (1801)
Q Consensus 1635 i~~~~g~~~~A~~~~~~~~k~~~~~------~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1708 (1801)
.....+....+.+.+++++..|... ..-|.. ..+..|.+.. ..++..++..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~-----------~~r~~l~~~~--------~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVE-----------PERERLRELY--------LDALERLAEALLEA 75 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHH-----------HHHHHHHHHH--------HHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHH-----------HHHHHHHHHH--------HHHHHHHHHHHHhc
Confidence 3455677788888888888776311 112322 2223333321 35677778888899
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1709 g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
|++++|..++++++..+|-+..+|..++..+...|+...|...|++...
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765
No 413
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.85 E-value=1.2 Score=56.03 Aligned_cols=185 Identities=12% Similarity=0.079 Sum_probs=93.4
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHH-HHH---HHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000242 1545 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NIW---VAYFNLENEYGNPPEEAVVKVFQRAL 1620 (1801)
Q Consensus 1545 L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l-~lW---~a~l~le~~~g~~~~e~a~~vferAl 1620 (1801)
+..+|. +.+|.-++.+.++.-+++-|...|-|+-.-... .-.-|+ .+. ++.+..-.-|| ..|+|+++|-.|=
T Consensus 686 iEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gi-k~vkrl~~i~s~~~q~aei~~~~g--~feeaek~yld~d 761 (1189)
T KOG2041|consen 686 IEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGI-KLVKRLRTIHSKEQQRAEISAFYG--EFEEAEKLYLDAD 761 (1189)
T ss_pred HhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccccch-hHHHHhhhhhhHHHHhHhHhhhhc--chhHhhhhhhccc
Confidence 344564 799999999999999999999999887531110 000000 000 11111112345 3366666665542
Q ss_pred hcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHH
Q 000242 1621 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKF 1697 (1801)
Q Consensus 1621 ~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~--~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~ 1697 (1801)
+..-.-.++..+ |++-...+++...-.-. ..-..+|..++..+... .+++|.++|...- -
T Consensus 762 rrDLAielr~kl-------gDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~----------~ 824 (1189)
T KOG2041|consen 762 RRDLAIELRKKL-------GDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG----------D 824 (1189)
T ss_pred hhhhhHHHHHhh-------hhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------c
Confidence 211111222222 22223333332211100 12356777888877777 8888888777631 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000242 1698 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1754 (1801)
Q Consensus 1698 ~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lfer 1754 (1801)
...++..++...+++. +|.+....|.+..+.-..+++..+-|--++|.+.|-|
T Consensus 825 ~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1223333333322222 3444455566666666666666666666666655544
No 414
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=94.85 E-value=0.37 Score=49.23 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000242 1679 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE 1719 (1801)
Q Consensus 1679 ~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe 1719 (1801)
+.+|+-+...--...+..+|..||.++...|++.+|.++|+
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444433333333333444444444444444444444443
No 415
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=1.2 Score=51.61 Aligned_cols=146 Identities=15% Similarity=0.031 Sum_probs=104.1
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHH---HHHHHHHc
Q 000242 1633 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQ---TAILEFKN 1708 (1801)
Q Consensus 1633 ~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~---~a~le~~~ 1708 (1801)
+.-....+++.+|..+|..++...+.+.++-+.|+..++.. +.+.|..+|... |...+-+-|.. ...++.+.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHHHHHHHHHHHHH
Confidence 33456788899999999999999998999999999999999 999998888763 33222222322 22333333
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHH
Q 000242 1709 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1784 (1801)
Q Consensus 1709 g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~e~ 1784 (1801)
....+. .-+++.+..+|++.++-+.+++.+...|+.+.|.+.+=..+..+....+- ..=+..+++..-.|..+-
T Consensus 217 a~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~-~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 217 AATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG-EARKTLLELFEAFGPADP 290 (304)
T ss_pred hcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc-HHHHHHHHHHHhcCCCCH
Confidence 332222 23566678899999999999999999999999988888888755554444 456677777777774443
No 416
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.82 E-value=1.9 Score=53.12 Aligned_cols=191 Identities=14% Similarity=0.087 Sum_probs=127.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHh----c
Q 000242 1548 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-PEEAVVKVFQRALQ----Y 1622 (1801)
Q Consensus 1548 ~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~-~~e~a~~vferAl~----~ 1622 (1801)
.+.+....+.++..+-...+++++..+....... + ..-..-++.|...+... ...+ .-+....+-.-++. .
T Consensus 67 ~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~-~-~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~ 142 (352)
T PF02259_consen 67 SSESYQRAYPSLVKLQQLVELEEIIELKSNLSQN-P-QDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLP 142 (352)
T ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc-H-HHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccch
Confidence 3456666666666666667777777766332111 0 00001135676655432 1110 11222221122222 1
Q ss_pred CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHh-CHHHHHHHHHHHHH-hCCCC----
Q 000242 1623 CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL-SLPRH---- 1692 (1801)
Q Consensus 1623 ~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~----~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk-~~p~~---- 1692 (1801)
......|+.++.+..+.|+++.|...+.++....+ ..+.+.+.++.++... +..+|...++..++ .....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 11238999999999999999999999999887541 2678889999999999 99999999888777 21111
Q ss_pred ---------------------------ChHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000242 1693 ---------------------------KHIKFISQTAILEFKN------GVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1739 (1801)
Q Consensus 1693 ---------------------------~~~~~~~~~a~le~~~------g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le 1739 (1801)
...+++..+|.+.... +..+.+...|..++..+|.....|..++.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 1136888888888777 7899999999999999999999999999887
Q ss_pred HHc
Q 000242 1740 IRL 1742 (1801)
Q Consensus 1740 ~k~ 1742 (1801)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 643
No 417
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=1.6 Score=48.59 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHh-CChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHh
Q 000242 1608 PEEAVVKVFQRALQYCDPK-------KVHLALLGLYERT-EQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ 1673 (1801)
Q Consensus 1608 ~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~-g~~~~A~~~~~~~~k~~~------~~~~~w~~~a~~~~~~ 1673 (1801)
+.++|...+++|+++.-.. +.|+.++.+|+.. .++++|...|+.+-.-|. ...+.++..+.+....
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 4577888888888765432 6788999999887 899999999999987764 2356677788877777
Q ss_pred -CHHHHHHHHHHHHHhCCCCCh----H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000242 1674 -QQEGVQAVVQRALLSLPRHKH----I-KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1730 (1801)
Q Consensus 1674 -~~~~A~~ll~ralk~~p~~~~----~-~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~d 1730 (1801)
++.+|..+|++....--.+.- + ..++..+..++-..|.=.++..+|+-...+|.-.+
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 999999999986654323211 1 23344444455557888888888888888998555
No 418
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=5 Score=45.09 Aligned_cols=204 Identities=10% Similarity=0.037 Sum_probs=103.3
Q ss_pred cCCCCcHHHHHHHHHcC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHHHHc
Q 000242 1532 KDAPRTPDEFERLVRSS-----PN-SSFVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLNIWVAYFNLENEY 1604 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~-----P~-s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~-~ee~e~l~lW~a~l~le~~~ 1604 (1801)
.+...+...|+++-... |. --.....-+..|..+..+=.|...|+.|.-.... ..=.|-..+...-..++...
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34455556666554221 11 1223444444556665555555566555432110 00011223445555677788
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHh-CHHH
Q 000242 1605 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ-QQEG 1677 (1801)
Q Consensus 1605 g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~------~~~~w~~~a~~~~~~-~~~~ 1677 (1801)
| +.+.|-...++|-+. ..+-++++|.++|++++..+.. ..+.+-..++.+.+. ++++
T Consensus 105 G--spdtAAmaleKAak~--------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 G--SPDTAAMALEKAAKA--------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred C--CcchHHHHHHHHHHH--------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 8 447777777777543 2344555666666665554421 233333444556666 6766
Q ss_pred HHHHHHH----HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHH
Q 000242 1678 VQAVVQR----ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY----PKRTDLWSIYLDQEIRLGDVDLIR 1749 (1801)
Q Consensus 1678 A~~ll~r----alk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~----P~~~dlw~~y~~le~k~gd~e~ar 1749 (1801)
|-..|.+ +++........+.+...+.+++-..|+-.|...|+..-+.. |.+......++..| ..||++.+.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 6655555 22222222223455555555555667778887777754432 22222344444333 467777665
Q ss_pred HHH
Q 000242 1750 GLF 1752 (1801)
Q Consensus 1750 ~lf 1752 (1801)
.++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 554
No 419
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.70 E-value=0.034 Score=42.88 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=25.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 000242 1718 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1749 (1801)
Q Consensus 1718 fe~al~~~P~~~dlw~~y~~le~k~gd~e~ar 1749 (1801)
|+++++.+|++.+.|..|+.++...|+.++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67778888888888888888888888877775
No 420
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.68 E-value=3.3 Score=52.20 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=24.6
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000242 1760 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797 (1801)
Q Consensus 1760 ~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~ 1797 (1801)
..++.+..-.+.+..-.+..|+.+.|+..|-.|-+|-.
T Consensus 876 ~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ka 913 (1636)
T KOG3616|consen 876 HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKA 913 (1636)
T ss_pred hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHH
Confidence 44455555556666555667888888877777766643
No 421
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=1.4 Score=51.05 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=89.6
Q ss_pred HhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000242 1529 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1608 (1801)
Q Consensus 1529 ~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~ 1608 (1801)
...++.+++...|..++...|+++.+-..|+.+++..|+.+.|.+++... |......+.....+.+.+..+....
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~l~a~i~ll~qaa~~- 219 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHGLQAQIELLEQAAAT- 219 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHHHHHHHHHHHHHhcC-
Confidence 33566889999999999999999999999999999999999999888654 4322222222222355565555421
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc
Q 000242 1609 EEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKF 1656 (1801)
Q Consensus 1609 ~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~ 1656 (1801)
.. ...+++.+..+|. .+.-+.++..|...|++++|.+.+-.++++.
T Consensus 220 -~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 -PE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred -CC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 22 2335666677774 5999999999999999999999888888765
No 422
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=94.59 E-value=0.033 Score=41.50 Aligned_cols=28 Identities=29% Similarity=0.530 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000242 1745 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1776 (1801)
Q Consensus 1745 ~e~ar~lferal~~~~~pk~~k~lw~~yl~~E 1776 (1801)
+++||.+|||.+. ..|.. ..|.+|..||
T Consensus 3 ~dRAR~IyeR~v~--~hp~~--k~WikyAkFE 30 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEV--KNWIKYAKFE 30 (32)
T ss_pred HHHHHHHHHHHHH--hCCCc--hHHHHHHHhh
Confidence 4455555555554 33321 2455555554
No 423
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=1.2 Score=50.03 Aligned_cols=147 Identities=10% Similarity=0.038 Sum_probs=114.8
Q ss_pred CCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000242 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1614 (1801)
Q Consensus 1535 ~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~ 1614 (1801)
+.+..++++-+. ..-+.|+.++.-.+++.-...++...++..|.. +-.+-.+++.+..+.| +++.|..
T Consensus 166 ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~----~p~L~s~Lgr~~MQ~G--D~k~a~~ 233 (366)
T KOG2796|consen 166 ESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ----EPQLLSGLGRISMQIG--DIKTAEK 233 (366)
T ss_pred hhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc----cHHHHHHHHHHHHhcc--cHHHHHH
Confidence 344455554432 344667888888889999999998888755421 2357778899999999 8899999
Q ss_pred HHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Q 000242 1615 VFQRALQYCDP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1686 (1801)
Q Consensus 1615 vferAl~~~~~-------~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ral 1686 (1801)
.|++.-+.+.. ..++.+.+.+|.-++++..|...|.+++...+.++.+-.+.|-+++-. +...|.+.++.++
T Consensus 234 yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 234 YFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred HHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99966543321 267788888899999999999999999999988888888888888888 8999999999999
Q ss_pred HhCCCCC
Q 000242 1687 LSLPRHK 1693 (1801)
Q Consensus 1687 k~~p~~~ 1693 (1801)
+..|...
T Consensus 314 ~~~P~~~ 320 (366)
T KOG2796|consen 314 QQDPRHY 320 (366)
T ss_pred ccCCccc
Confidence 9999863
No 424
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.50 E-value=0.98 Score=50.69 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhCChHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHh-CH
Q 000242 1608 PEEAVVKVFQRALQYCDPK-----KVHLALLGLYERTEQNKLADELLYKMIKKF------KHSCKVWLRRVQRLLKQ-QQ 1675 (1801)
Q Consensus 1608 ~~e~a~~vferAl~~~~~~-----~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~------~~~~~~w~~~a~~~~~~-~~ 1675 (1801)
.+++|..-|++.++..+.. ...-+++.++.+.+++++..+.|.+++.-- ..+.+.-.....+.-.. +.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 4688999999999988764 667778889999999999999998877422 13455555666655555 77
Q ss_pred HHHHHHHHHHHHhCCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHH---HHHHHHHH
Q 000242 1676 EGVQAVVQRALLSLPRHKHIKFI----SQTAILEFKNGVADRGRSMFEGILSEYPKR---------TDL---WSIYLDQE 1739 (1801)
Q Consensus 1676 ~~A~~ll~ralk~~p~~~~~~~~----~~~a~le~~~g~~e~Ar~lfe~al~~~P~~---------~dl---w~~y~~le 1739 (1801)
+-....|+..|..+...+.-.+| .+++.+++..+++.+-..++.++-+++.+. ..+ +..-+++|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 77777888777766543333455 467888888888888888888887765431 233 44446778
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 000242 1740 IRLGDVDLIRGLFERAISL 1758 (1801)
Q Consensus 1740 ~k~gd~e~ar~lferal~~ 1758 (1801)
..+++-.+...+|+++++.
T Consensus 202 T~qKnNKkLK~lYeqalhi 220 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHI 220 (440)
T ss_pred hhhcccHHHHHHHHHHHHh
Confidence 8888888999999999984
No 425
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.45 E-value=0.96 Score=57.94 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHH-HHHHHHHHHHHcCChHHHH
Q 000242 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP---KRTD-LWSIYLDQEIRLGDVDLIR 1749 (1801)
Q Consensus 1674 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P---~~~d-lw~~y~~le~k~gd~e~ar 1749 (1801)
..+.|.++++++.+.+|... -....-|+++...|++++|.+.|++++..-. .-.+ .+..++..++-+.++++|.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~--lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSA--LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 45667777777777777662 3333444566677777777777777663221 1111 2344455556667777777
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHH--HHHHHcCCH-------HHHHHHHHHHHHHHHh
Q 000242 1750 GLFERAISLSLPPKKMKFLFKKYL--EYEKSVGEE-------ERIEYVKQKAMEYVES 1798 (1801)
Q Consensus 1750 ~lferal~~~~~pk~~k~lw~~yl--~~E~~~G~~-------e~a~~v~~rAl~~v~~ 1798 (1801)
..|.+.+. ...+.++ +-.|+ -+....|+. ++|..+|.++-.+.++
T Consensus 326 ~~f~~L~~-~s~WSka---~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 326 EYFLRLLK-ESKWSKA---FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHHh-ccccHHH---HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 77777776 2233222 22333 234455655 5556666666555554
No 426
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=94.45 E-value=0.12 Score=63.02 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=58.3
Q ss_pred cCCCEEEEEEEEEeeCcCeEEEEeC----C-ceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEeec
Q 000242 1124 HEGDIVGGRISKILSGVGGLVVQIG----P-HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISR 1198 (1801)
Q Consensus 1124 ~~G~~v~g~V~~i~~~~~g~~V~l~----~-~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~id~ 1198 (1801)
+.|++++|+|.++... +++|+++ . +..|++|..|.. |.+.|++|+.|+|+|..+..
T Consensus 151 ~~GeIV~G~V~r~e~~--~viv~l~~~~g~~~~EaiLP~~Eqi-----------------p~E~y~~Gdrika~i~~V~~ 211 (449)
T PRK12329 151 LEDTVLTARVLRFERQ--SVIMAVSSGFGQPEVEAELPKREQL-----------------PNDNYRANATFKVFLKEVSE 211 (449)
T ss_pred hcCcEEEEEEEEEcCC--CEEEEecccCCCcceEEEecHHHcC-----------------CCCcCCCCCEEEEEEEEeec
Confidence 3899999999999988 9999993 3 489999988751 77899999999999999987
Q ss_pred CC-CCcceEEEeeccc
Q 000242 1199 TV-RGTFHVELSLRSS 1213 (1801)
Q Consensus 1199 ~~-~~~~~l~lS~r~~ 1213 (1801)
.. +| ..+.||+..+
T Consensus 212 ~~~kG-pqIilSRt~p 226 (449)
T PRK12329 212 GPRRG-PQLFVSRANA 226 (449)
T ss_pred CCCCC-CEEEEEcCCH
Confidence 63 43 5799997655
No 427
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.44 E-value=3.6 Score=51.95 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH------HH--h--cCC-CHHHHHHHHHHHHHh-CHHHHHHHHHH------HHH-
Q 000242 1627 KVHLALLGLYERTEQNKLADELLYKM------IK--K--FKH-SCKVWLRRVQRLLKQ-QQEGVQAVVQR------ALL- 1687 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g~~~~A~~~~~~~------~k--~--~~~-~~~~w~~~a~~~~~~-~~~~A~~ll~r------alk- 1687 (1801)
.+|..-+++|++..++++|.+.|.+. +. + ||. -.++=-.++..+... +++.|...|-. |++
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 66777777888888888888877652 21 2 231 122233455555555 66555544322 111
Q ss_pred ------------hCC---C-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 000242 1688 ------------SLP---R-HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1751 (1801)
Q Consensus 1688 ------------~~p---~-~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~l 1751 (1801)
.+. . +.....|-..|+.|...|+++.|..+|-.+ ++...-++||-+.|..+.|..+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHH
Confidence 110 0 001134455566677788999999998775 6777788888888988888888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000242 1752 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1789 (1801)
Q Consensus 1752 feral~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~ 1789 (1801)
-+.... | ...-.++..-.+=..++|.+.+|+++|
T Consensus 814 a~e~~~---~-e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECHG---P-EATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhcC---c-hhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 777543 2 222234433333344677777776654
No 428
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.44 E-value=2.2 Score=52.75 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=58.6
Q ss_pred HHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH-
Q 000242 1665 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS-EYPKRTDLWSIYLDQEIR- 1741 (1801)
Q Consensus 1665 ~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~-~~P~~~dlw~~y~~le~k- 1741 (1801)
.+|.++.+. +.++|.+.|+.+++.+|...+..+...+...+...+.+.+++.++.+-=. ..|++..+.+.-+-+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 445555555 67777777777777666655556777777777777777777777666421 135554443333333222
Q ss_pred cCC---------------hHHHHHHHHHHHhcCCCchhHH
Q 000242 1742 LGD---------------VDLIRGLFERAISLSLPPKKMK 1766 (1801)
Q Consensus 1742 ~gd---------------~e~ar~lferal~~~~~pk~~k 1766 (1801)
-+| -..|.+.+.||++ .+|.-++
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp~ 381 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVPK 381 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCch
Confidence 121 1236678888888 6665553
No 429
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=94.43 E-value=0.059 Score=40.24 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000242 1710 VADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1740 (1801)
Q Consensus 1710 ~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~ 1740 (1801)
.+++||.+||+.+...|. ...|..|+.+|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 468888888888888765 678888888764
No 430
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.36 E-value=0.33 Score=52.08 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Q 000242 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG----------VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL- 1742 (1801)
Q Consensus 1674 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g----------~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~- 1742 (1801)
-++.|++.++.....+|.+ .+.+.+|+..+..+. .++.|.+=|+.||..+|+..+....++..+..+
T Consensus 6 ~FE~ark~aea~y~~nP~D--adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLD--ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3789999999999999988 588888888665432 267788888999999999988655555555433
Q ss_pred ---CC-------hHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000242 1743 ---GD-------VDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1775 (1801)
Q Consensus 1743 ---gd-------~e~ar~lferal~~~~~pk~~k~lw~~yl~~ 1775 (1801)
.+ +++|...|++|.. ..|.+. ++++-+++
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne--~Y~ksLe~ 122 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNE--LYRKSLEM 122 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-H--HHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcH--HHHHHHHH
Confidence 33 4556666666666 455444 45554444
No 431
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.16 E-value=1.4 Score=56.36 Aligned_cols=149 Identities=17% Similarity=0.112 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHhcCCCH--------HHHHHHHH-HHH---HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-C
Q 000242 1608 PEEAVVKVFQRALQYCDPK--------KVHLALLG-LYE---RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1674 (1801)
Q Consensus 1608 ~~e~a~~vferAl~~~~~~--------~v~~~l~~-i~~---~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~ 1674 (1801)
+.+...+.+.++.+...-+ -.|...+. ++- .....+.|.++++.+.++||++.-..+..++++... +
T Consensus 203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~ 282 (468)
T PF10300_consen 203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGN 282 (468)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 6788999999998755432 11222222 111 245678899999999999998776666777777777 9
Q ss_pred HHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcCCh-----
Q 000242 1675 QEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD--QEIRLGDV----- 1745 (1801)
Q Consensus 1675 ~~~A~~ll~ralk~~p~~~--~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~--le~k~gd~----- 1745 (1801)
.++|.+.|++|+.....-+ +.-.+..++..+.-+.++++|...|.++++.+.-+ ..++.|.. ++...++.
T Consensus 283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-ka~Y~Y~~a~c~~~l~~~~~~~~ 361 (468)
T PF10300_consen 283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-KAFYAYLAAACLLMLGREEEAKE 361 (468)
T ss_pred HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHhhccchhhhh
Confidence 9999999999985322211 22456667777778899999999999999866654 44444433 45567777
Q ss_pred --HHHHHHHHHHHh
Q 000242 1746 --DLIRGLFERAIS 1757 (1801)
Q Consensus 1746 --e~ar~lferal~ 1757 (1801)
++|..+|.++-.
T Consensus 362 ~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 362 HKKEAEELFRKVPK 375 (468)
T ss_pred hHHHHHHHHHHHHH
Confidence 888899988776
No 432
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=94.11 E-value=0.13 Score=69.19 Aligned_cols=74 Identities=28% Similarity=0.359 Sum_probs=62.7
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCC-cEEEEEcccCCCcc-cCCc----------cccCCCCcEEEEEEEEEeCCCCE
Q 000242 1241 DLSPNMIVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGY-VESP----------EKEFPIGKLVAGRVLSVEPLSKR 1308 (1801)
Q Consensus 1241 ~l~~G~~v~G~V~~v~~~G~fV~l~~~-v~g~v~~s~lsd~~-~~~~----------~~~f~~G~~V~~~Vl~vd~~~~r 1308 (1801)
.-.+|+...|+|++++.+|+||.+... ++|+||++.|.++| .-++ ...|+.|+.|+++|.+++...++
T Consensus 619 ~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~~~ 698 (706)
T COG0557 619 KKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDERK 698 (706)
T ss_pred HHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEcccccc
Confidence 446899999999999999999999764 99999999999643 2222 23689999999999999998999
Q ss_pred EEEEEe
Q 000242 1309 VEVTLK 1314 (1801)
Q Consensus 1309 i~lSlk 1314 (1801)
+.+++-
T Consensus 699 i~~~~v 704 (706)
T COG0557 699 IDFELV 704 (706)
T ss_pred eEEEec
Confidence 888764
No 433
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.11 E-value=0.13 Score=48.12 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCchhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000242 1726 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL--SLPPKKM--KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798 (1801)
Q Consensus 1726 P~~~dlw~~y~~le~k~gd~e~ar~lferal~~--~~~pk~~--k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~~ 1798 (1801)
|.-..++..++..+...|++++|...|++++.. ..+++.. -..+..........|++++|..++++|++..++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 334567888999999999999999999999973 1333332 245666667788899999999999999998664
No 434
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=5.5 Score=45.12 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhC----CCCChHHHHHHH
Q 000242 1628 VHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL----PRHKHIKFISQT 1701 (1801)
Q Consensus 1628 v~~~l~~i~~~~g~~~~A~~~~~~~~k~~-~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~----p~~~~~~~~~~~ 1701 (1801)
+-+.|++++.-.+.|.-...+|.+.++++ +..+.+-..++...++. +.+.|...|++.-+.. .......+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33456667777888999999999999988 56777788899999988 9999999999654432 112224566667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1702 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1702 a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
+.++.-.+++..|...|.+++..+|.++...+.-+-+.+-.|+...|....+.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777788999999999999999999988877777777778899999999999998
No 435
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=94.06 E-value=0.17 Score=61.69 Aligned_cols=107 Identities=14% Similarity=0.237 Sum_probs=73.5
Q ss_pred CcccCCEEEEEEEEE--eCCe-EEEEEccccccc----hh-hhhhhhhhcCCCcEEEEEEEEEeeceEEEEEc---C--C
Q 000242 408 KFKVGAELVFRVLGV--KSKR-ITVTHKKTLVKS----KL-AILSSYAEATDRLITHGWITKIEKHGCFVRFY---N--G 474 (1801)
Q Consensus 408 ~~~vG~~v~~rVl~v--~~~~-i~ls~k~~l~~~----~~-~~~~~~~~~~~g~~~~g~V~~i~~~G~~V~~~---~--~ 474 (1801)
.+++|+.|...|--. +-+| ..-|.|+.+... .. -+...|.+ ..|.++.|+|.++...+++|++. | +
T Consensus 102 ~~~iGD~v~~~v~~~~~~fgRiAAq~aKQvi~Qkire~ER~~i~~ef~~-~~GeIV~G~V~r~e~~~viv~l~~~~g~~~ 180 (449)
T PRK12329 102 EAQLGDTVVLDVTPEQEDFGRMAAIQTKQVLAQKLRDQQRKMIQEEFQD-LEDTVLTARVLRFERQSVIMAVSSGFGQPE 180 (449)
T ss_pred CCcCCCEEEEecCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEcCCCEEEEecccCCCcc
Confidence 588999998766311 1122 223333332221 11 12233433 47999999999999999999983 3 3
Q ss_pred eEEEecccccCCCCCCCCCCCccCCCEEEEEEEEEeCCC---CeEEEEEe
Q 000242 475 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS---RRINLSFM 521 (1801)
Q Consensus 475 v~g~vp~s~~~~~~~~~~~~~~~~G~~v~~rVl~~d~~~---~~l~lS~k 521 (1801)
+.|++|.++. -|.+.|++|+.++|.|.+++... -.+.||..
T Consensus 181 ~EaiLP~~Eq------ip~E~y~~Gdrika~i~~V~~~~~kGpqIilSRt 224 (449)
T PRK12329 181 VEAELPKREQ------LPNDNYRANATFKVFLKEVSEGPRRGPQLFVSRA 224 (449)
T ss_pred eEEEecHHHc------CCCCcCCCCCEEEEEEEEeecCCCCCCEEEEEcC
Confidence 9999999988 35678999999999999998753 46888864
No 436
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.02 E-value=0.18 Score=58.06 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=88.8
Q ss_pred HHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000242 1665 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1743 (1801)
Q Consensus 1665 ~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~g 1743 (1801)
..++-++++ +|++|..+|.+++...|.+. -++.+.|..|++...+..|..-.+.|+..+..-...|+.-+..-..+|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~Np--V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNP--VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCc--cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 456678888 99999999999999999874 678888899999999999999999998877766667777777777889
Q ss_pred ChHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000242 1744 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1775 (1801)
Q Consensus 1744 d~e~ar~lferal~~~~~pk~~k~lw~~yl~~ 1775 (1801)
...+|..-+|++|. +.|+.. .+-+.|.++
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~~-ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKNI-ELKKSLARI 208 (536)
T ss_pred hHHHHHHhHHHHHh--hCcccH-HHHHHHHHh
Confidence 99999999999999 888776 576666654
No 437
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=0.53 Score=53.49 Aligned_cols=169 Identities=15% Similarity=0.077 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Q 000242 1610 EAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1687 (1801)
Q Consensus 1610 e~a~~vferAl~~~~~-~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk 1687 (1801)
+.|.++..--.+.+|. .-....++-+|....++..|.+.|+++...+|...+.-+-+++.+.+. .+..|..+...+..
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 5567777766677774 456666777999999999999999999999999999999999999998 99999888777653
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000242 1688 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP--KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1688 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P--~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~ 1765 (1801)
. ..-+-.....-+...+..+++.-+|.+.++. | ...+..+..+=+.++.|+++.|..-|..|+. ..-=++
T Consensus 107 ~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~Ad~~in~gCllykegqyEaAvqkFqaAlq--vsGyqp 178 (459)
T KOG4340|consen 107 N--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ--VSGYQP 178 (459)
T ss_pred C--HHHHHHHHHHHHHHhcccccCcchHHHHHhc----cCCCccchhccchheeeccccHHHHHHHHHHHHh--hcCCCc
Confidence 2 1112234444445566788999999998875 5 4567788888888899999999999999998 433333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH
Q 000242 1766 KFLFKKYLEYEKSVGEEERIEY 1787 (1801)
Q Consensus 1766 k~lw~~yl~~E~~~G~~e~a~~ 1787 (1801)
-..++.-+.-. +.|++..|.+
T Consensus 179 llAYniALaHy-~~~qyasALk 199 (459)
T KOG4340|consen 179 LLAYNLALAHY-SSRQYASALK 199 (459)
T ss_pred hhHHHHHHHHH-hhhhHHHHHH
Confidence 23344433322 3455555443
No 438
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.49 E-value=4.6 Score=49.37 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhcCCC--
Q 000242 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE---YGNPPEEAVVKVFQRALQYCDP-- 1625 (1801)
Q Consensus 1551 s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~---~g~~~~e~a~~vferAl~~~~~-- 1625 (1801)
+++.-+.++-.|....+++.-..+.+..- .+|...-.+..++-..|+-..++ -| +.++|+.++..++.....
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~-~~p~~~~~~~~~i~~~yafALnRrn~~g--dre~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLE-ALPTCDVANQHNIKFQYAFALNRRNKPG--DREKALQILLPVLESDENPD 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhh-ccCccchhcchHHHHHHHHHHhhcccCC--CHHHHHHHHHHHHhccCCCC
Confidence 56777788888888899999999997655 45533333334666677766666 56 668888888887655443
Q ss_pred HHHHHHHHHHHHH---------hCChHHHHHHHHHHHHhc
Q 000242 1626 KKVHLALLGLYER---------TEQNKLADELLYKMIKKF 1656 (1801)
Q Consensus 1626 ~~v~~~l~~i~~~---------~g~~~~A~~~~~~~~k~~ 1656 (1801)
.++|--++.+|.+ ....++|...|.++....
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 3777777776642 122555666666666544
No 439
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.41 E-value=2.2 Score=49.56 Aligned_cols=155 Identities=15% Similarity=0.130 Sum_probs=114.2
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHH--HHHHHHHHcCCCCH
Q 000242 1532 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV--AYFNLENEYGNPPE 1609 (1801)
Q Consensus 1532 ~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~--a~l~le~~~g~~~~ 1609 (1801)
+..++|...++++|...|.+..+|..--..+.-.|+.+.-+..+++.+..-+ ++.- ...++ .|.--....|- .
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp-~~sYv~GmyaFgL~E~g~--y 191 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLP-CYSYVHGMYAFGLEECGI--Y 191 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCc-HHHHHHHHHHhhHHHhcc--c
Confidence 4588999999999999999999998888888889999999999998874322 2211 12222 22222345563 4
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHh-CHHHHHHHHH
Q 000242 1610 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVVQ 1683 (1801)
Q Consensus 1610 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~----~~~w~~~a~~~~~~-~~~~A~~ll~ 1683 (1801)
+.|++..+|||+.|+.. =...+.+.+++..+++.++.+.+.+.-....++ ..-|-..|.|+++. .++.|..+|.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 88999999999999875 566778889999999999998887765444322 33455677888888 9999999998
Q ss_pred HH-HHhCCC
Q 000242 1684 RA-LLSLPR 1691 (1801)
Q Consensus 1684 ra-lk~~p~ 1691 (1801)
|- ++.+.+
T Consensus 272 ~ei~k~l~k 280 (491)
T KOG2610|consen 272 REIWKRLEK 280 (491)
T ss_pred HHHHHHhhc
Confidence 73 344433
No 440
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.38 E-value=0.13 Score=38.70 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000242 1641 QNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1671 (1801)
Q Consensus 1641 ~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~ 1671 (1801)
..+.|+.+|++++..+|.+..+|..|+.++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 4566777777777777777777777777653
No 441
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.22 E-value=0.21 Score=38.13 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000242 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1728 (1801)
Q Consensus 1696 ~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~ 1728 (1801)
.+|..+|..++..|++++|+..|+++++.+|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777753
No 442
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.64 E-value=2.1 Score=45.38 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 000242 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753 (1801)
Q Consensus 1674 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lfe 1753 (1801)
..+.+...+++|+....+.--..+-. ..=....|..|+... .+++..++..+...|+++.|..+++
T Consensus 21 ~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 21 DPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY------LDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp -HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 66777777777777664431000000 011233333444432 4567778888889999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhC
Q 000242 1754 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1801 (1801)
Q Consensus 1754 ral~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~v~~~~~ 1801 (1801)
+++. ..|-+- .+|...+......|+...|..+|+++.+.+..-+|
T Consensus 87 ~~l~--~dP~~E-~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 87 RALA--LDPYDE-EAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp HHHH--HSTT-H-HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHh--cCCCCH-HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 9999 666655 69999999999999999999999999998876543
No 443
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.45 E-value=13 Score=45.50 Aligned_cols=147 Identities=13% Similarity=0.089 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHH---hCChHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHh------
Q 000242 1609 EEAVVKVFQRALQYC-----DPKKVHLALLGLYER---TEQNKLADELLYKMIK-KFKHSCKVWLRRVQRLLKQ------ 1673 (1801)
Q Consensus 1609 ~e~a~~vferAl~~~-----~~~~v~~~l~~i~~~---~g~~~~A~~~~~~~~k-~~~~~~~~w~~~a~~~~~~------ 1673 (1801)
.+....+.+..-..- ....+-..|+-.+-+ .|+.++|.+++..++. ..+.++++|-..|..+...
T Consensus 157 ydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~ 236 (374)
T PF13281_consen 157 YDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNF 236 (374)
T ss_pred HHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCc
Confidence 366666666554331 124778888888888 8999999999999554 4578899999988888765
Q ss_pred ----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------H--hCCCCHHHHHH--HHH
Q 000242 1674 ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL--------S--EYPKRTDLWSI--YLD 1737 (1801)
Q Consensus 1674 ----~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al--------~--~~P~~~dlw~~--y~~ 1737 (1801)
..++|...|.++....|.. -.-.++|.++.-.|.........+++. + ...+..+.|-. |+.
T Consensus 237 ~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~E 313 (374)
T PF13281_consen 237 TDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLE 313 (374)
T ss_pred cchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 2678999999999888654 245566767666664322222222211 1 12334566744 566
Q ss_pred HHHHcCChHHHHHHHHHHHhc
Q 000242 1738 QEIRLGDVDLIRGLFERAISL 1758 (1801)
Q Consensus 1738 le~k~gd~e~ar~lferal~~ 1758 (1801)
+.+-.||+++|...++++...
T Consensus 314 a~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 314 ASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHcCCHHHHHHHHHHHhhc
Confidence 667789999999999999983
No 444
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=3.3 Score=46.37 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCC
Q 000242 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1693 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~ 1693 (1801)
.+++.|.+++...+.|=++.+.....++.+|.+.++++..|...... +.++|++-|+.+|...|.-.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 67888999999999999999999999999999999999999999999 99999999999999988753
No 445
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=12 Score=49.57 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=56.9
Q ss_pred hcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChH
Q 000242 1564 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1643 (1801)
Q Consensus 1564 ~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~ 1643 (1801)
..+.+|+|.+.++|+-+ | .+|..++...++.+ ....|.+-|-|| ++..-|....+...+.|+++
T Consensus 1087 ~i~~ldRA~efAe~~n~--p--------~vWsqlakAQL~~~--~v~dAieSyika----dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCNE--P--------AVWSQLAKAQLQGG--LVKDAIESYIKA----DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HhhhHHHHHHHHHhhCC--h--------HHHHHHHHHHHhcC--chHHHHHHHHhc----CCcHHHHHHHHHHHhcCcHH
Confidence 45677888777776641 2 48888888888777 457777777776 45577888888888888888
Q ss_pred HHHHHHHHHHHhc
Q 000242 1644 LADELLYKMIKKF 1656 (1801)
Q Consensus 1644 ~A~~~~~~~~k~~ 1656 (1801)
+....+.-+-++.
T Consensus 1151 dLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKV 1163 (1666)
T ss_pred HHHHHHHHHHHhh
Confidence 8888777776665
No 446
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.67 E-value=0.87 Score=52.01 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=47.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhHHHH
Q 000242 1706 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1768 (1801)
Q Consensus 1706 ~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~k~l 1768 (1801)
++.|..|+|.++|+.|++..|.++++...|+++.....++-+|-.+|-+|+. ..|.+.+.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--isP~nseAL 187 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT--ISPGNSEAL 187 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee--eCCCchHHH
Confidence 4567888888888888888888888888888887777888888888888887 666555433
No 447
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=1.3 Score=49.50 Aligned_cols=98 Identities=16% Similarity=0.029 Sum_probs=61.2
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000242 1639 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1717 (1801)
Q Consensus 1639 ~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~l 1717 (1801)
..+|..|...|.+++...|..+..|.+.|..+++. +++.+..--.||++..|.. ++..+..+++..+...++.|...
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccccHHHHH
Confidence 34556666677777777766667777777766666 6677766667777666554 35556666666666666777777
Q ss_pred HHHHHHhC-----CCCHHHHHHHHHH
Q 000242 1718 FEGILSEY-----PKRTDLWSIYLDQ 1738 (1801)
Q Consensus 1718 fe~al~~~-----P~~~dlw~~y~~l 1738 (1801)
+.++.... |.-.++|..+.+.
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 77664331 2234566655443
No 448
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.45 E-value=26 Score=51.36 Aligned_cols=229 Identities=16% Similarity=0.154 Sum_probs=145.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHH
Q 000242 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIR--EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1628 (1801)
Q Consensus 1551 s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~--ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~~v 1628 (1801)
+++-|.+-+..-....++.+-.-.++|+.-....+ -...-.+.|..++.+....| ..+.|....-.|.+.- ..++
T Consensus 1628 ~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG--~~q~A~nall~A~e~r-~~~i 1704 (2382)
T KOG0890|consen 1628 NSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG--HLQRAQNALLNAKESR-LPEI 1704 (2382)
T ss_pred cchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc--cHHHHHHHHHhhhhcc-cchH
Confidence 56778776666544445555555566666544222 11122379999999998899 4588877776666554 4589
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhc-CC----------------CHHHHHHHHHHHHHh---CHHHHHHHHHHHHHh
Q 000242 1629 HLALLGLYERTEQNKLADELLYKMIKKF-KH----------------SCKVWLRRVQRLLKQ---QQEGVQAVVQRALLS 1688 (1801)
Q Consensus 1629 ~~~l~~i~~~~g~~~~A~~~~~~~~k~~-~~----------------~~~~w~~~a~~~~~~---~~~~A~~ll~ralk~ 1688 (1801)
+...|.++.+.|+...|..+++..+.++ ++ ..++.+.++.|.... ..+.....|..|.+.
T Consensus 1705 ~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1705 VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999654 33 134566677777666 466778999999999
Q ss_pred CCCC--ChHHHHHHHHHHHH--------HcCCHHH---HHHHHHHHHH--------hCCCCHHHHHHHHHHHH---HcC-
Q 000242 1689 LPRH--KHIKFISQTAILEF--------KNGVADR---GRSMFEGILS--------EYPKRTDLWSIYLDQEI---RLG- 1743 (1801)
Q Consensus 1689 ~p~~--~~~~~~~~~a~le~--------~~g~~e~---Ar~lfe~al~--------~~P~~~dlw~~y~~le~---k~g- 1743 (1801)
+|.. .|..+-..|..++. +.|++.. |...|.+++. +.|+=..+|..|+.-.. +.+
T Consensus 1785 l~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r 1864 (2382)
T KOG0890|consen 1785 LPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPR 1864 (2382)
T ss_pred cccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCCh
Confidence 9853 23222233444433 3456666 4444456653 45766778999754332 233
Q ss_pred ------ChHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH--cCCHHHHH
Q 000242 1744 ------DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS--VGEEERIE 1786 (1801)
Q Consensus 1744 ------d~e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~--~G~~e~a~ 1786 (1801)
+....-.+.++++. .+||- .++..|-++-.+ |-+.+-+.
T Consensus 1865 ~ei~s~~~~~in~~i~~~~~-~lp~Y---~f~ta~sQLlSRicH~~~dV~~ 1911 (2382)
T KOG0890|consen 1865 GEIVSKNLKLINSLIEEALE-HLPTY---QFYTAYSQLLSRICHPNQDVAR 1911 (2382)
T ss_pred hhhhhhhHHHHHHHHHHHHH-hCcch---HHHHHHHHHHHHHcCCchHHHH
Confidence 33334455666666 56663 355666666443 44444443
No 449
>PRK10811 rne ribonuclease E; Reviewed
Probab=91.45 E-value=0.41 Score=63.18 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=52.2
Q ss_pred CCCCEEEEEEEEEee--ceEEEEeCCCcEEEEEcccCCCcccCC---------ccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000242 1243 SPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDGYVES---------PEKEFPIGKLVAGRVLSVEPLSKRVEV 1311 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~--~G~fV~l~~~v~g~v~~s~lsd~~~~~---------~~~~f~~G~~V~~~Vl~vd~~~~ri~l 1311 (1801)
.+|.++.|+|.+|.+ .++||+||.+..||++++|+...+..+ ....+++||.|-|-|..-...++...|
T Consensus 37 ~vGnIYkGkVenIvPGInAAFVDIG~gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~KEa~gtKGp~L 116 (1068)
T PRK10811 37 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 (1068)
T ss_pred CccceEEEEEecccCCcceeEEEecCCcceEEEhhhccccccccccccccccccccccCCCCEEEEEEeecccCCCCCce
Confidence 479999999999976 499999999999999999996543222 134578899999988654333333333
Q ss_pred E
Q 000242 1312 T 1312 (1801)
Q Consensus 1312 S 1312 (1801)
|
T Consensus 117 T 117 (1068)
T PRK10811 117 T 117 (1068)
T ss_pred e
Confidence 3
No 450
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.38 E-value=4 Score=50.34 Aligned_cols=172 Identities=13% Similarity=0.099 Sum_probs=110.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---HHHcCCCCHHHHHHHH
Q 000242 1540 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL---ENEYGNPPEEAVVKVF 1616 (1801)
Q Consensus 1540 ~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~l---e~~~g~~~~e~a~~vf 1616 (1801)
.+-.+|..+|...+..++++..+.++|+.+.|.++.+|||-.+. ..|...... ....|+ ++=-|
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e--------~~~~~~F~~~~~~~~~g~-----~rL~~ 94 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE--------RAFHPSFSPFRSNLTSGN-----CRLDY 94 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHHHhhhhhcccccCc-----cccCC
Confidence 34456788999999999999999999999999999999995433 123332211 111111 01001
Q ss_pred HHHHhcCCCHHHH---HHHHHHHHHhCChHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHh--CHHHHHHHHHHHHHhCC
Q 000242 1617 QRALQYCDPKKVH---LALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLP 1690 (1801)
Q Consensus 1617 erAl~~~~~~~v~---~~l~~i~~~~g~~~~A~~~~~~~~k~~~~-~~~~w~~~a~~~~~~--~~~~A~~ll~ralk~~p 1690 (1801)
++ ...+.+| ..++..+.+.|-+..|.+..+-+++..|. ++-.-+.+++++.=. +++--.++++.......
T Consensus 95 ~~----~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 95 RR----PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred cc----ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhh
Confidence 10 0112333 44556778889999999999999998876 666666666655544 77777777766544211
Q ss_pred CC---ChHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCC
Q 000242 1691 RH---KHIKFISQTAILEFKNGVA---------------DRGRSMFEGILSEYPKR 1728 (1801)
Q Consensus 1691 ~~---~~~~~~~~~a~le~~~g~~---------------e~Ar~lfe~al~~~P~~ 1728 (1801)
.. .-+.+-+..|..++..++. +.|+.++.+|+..+|.-
T Consensus 171 ~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 171 RNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 11 0123445555556666666 89999999999999854
No 451
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.17 E-value=20 Score=47.77 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 000242 1549 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1623 (1801)
Q Consensus 1549 P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~ 1623 (1801)
-+.+..|.+++..+++.+.+..|.+-|-+|=.-. -+...++...+.++| +...+.+.-|-+..
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyikadDps----------~y~eVi~~a~~~~~~--edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPS----------NYLEVIDVASRTGKY--EDLVKYLLMARKKV 1163 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcH----------HHHHHHHHHHhcCcH--HHHHHHHHHHHHhh
Confidence 3778999999999999999999999997774321 244444455555543 55555555444443
No 452
>PRK10811 rne ribonuclease E; Reviewed
Probab=90.97 E-value=0.45 Score=62.85 Aligned_cols=69 Identities=25% Similarity=0.434 Sum_probs=53.4
Q ss_pred CCCcEEEEEEEEEeec--eEEEEEeCCceeEEeeccccCccccc---------CcccccCCCCEEEEEEEEEecCCCeeE
Q 000242 1333 HVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSEDHVD---------NIETIYRAGEKVKVKILKVDKEKRRIS 1401 (1801)
Q Consensus 1333 ~~G~~v~G~V~~v~~~--G~fV~l~~~~v~gl~~~sel~~~~~~---------~~~~~~~~Gd~V~~~Vl~id~e~~ri~ 1401 (1801)
.+|.||.|+|.+|.+. ++||.|+. +..|++|++++...... ..+..+++||.|-|.|.+-....+-..
T Consensus 37 ~vGnIYkGkVenIvPGInAAFVDIG~-gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~KEa~gtKGp~ 115 (1068)
T PRK10811 37 KKANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAA 115 (1068)
T ss_pred CccceEEEEEecccCCcceeEEEecC-CcceEEEhhhccccccccccccccccccccccCCCCEEEEEEeecccCCCCCc
Confidence 5899999999999874 89999996 89999999999543321 234568999999999998654444333
Q ss_pred E
Q 000242 1402 L 1402 (1801)
Q Consensus 1402 l 1402 (1801)
|
T Consensus 116 L 116 (1068)
T PRK10811 116 L 116 (1068)
T ss_pred e
Confidence 3
No 453
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.48 E-value=0.59 Score=35.56 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC
Q 000242 1661 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1691 (1801)
Q Consensus 1661 ~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1691 (1801)
++|..++..+... ++++|++.|+++++..|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3455555555555 555555555555555554
No 454
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=6.8 Score=44.55 Aligned_cols=188 Identities=12% Similarity=0.040 Sum_probs=121.0
Q ss_pred cCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhC-ChHHHHHHHHHHHHhcCCC
Q 000242 1582 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTE-QNKLADELLYKMIKKFKHS 1659 (1801)
Q Consensus 1582 i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~g-~~~~A~~~~~~~~k~~~~~ 1659 (1801)
|.+++++.. -++|++.-...++ .-+.|.++-+.++..+|.+ ++|.-.-.++...+ ...+-.+.+.+.+..+|.+
T Consensus 36 I~Yte~fr~---~m~YfRAI~~~~E-~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN 111 (318)
T KOG0530|consen 36 IAYTEDFRD---VMDYFRAIIAKNE-KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN 111 (318)
T ss_pred eeechhHHH---HHHHHHHHHhccc-cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc
Confidence 444555443 4556655444443 2478888889999998886 88877777665443 3556677778888888889
Q ss_pred HHHHHHHHHHHHHh-CHH-HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000242 1660 CKVWLRRVQRLLKQ-QQE-GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1737 (1801)
Q Consensus 1660 ~~~w~~~a~~~~~~-~~~-~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~ 1737 (1801)
..+|-..-...... .+. +-.++.++++....++.| +|..---.....++++.-.++-..+|..+--+-.+|++-.-
T Consensus 112 YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH--aWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryf 189 (318)
T KOG0530|consen 112 YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH--AWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYF 189 (318)
T ss_pred hhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh--hhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeE
Confidence 99998766555544 555 666777888887666654 55555545555666888888888888777777777875322
Q ss_pred HHHH-cCCh-----HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000242 1738 QEIR-LGDV-----DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1778 (1801)
Q Consensus 1738 le~k-~gd~-----e~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1778 (1801)
.... .|-. ++-...-...|. +-|.+- ..|+-..-+...
T Consensus 190 vi~~~~~~~~~~~le~El~yt~~~I~--~vP~Ne-SaWnYL~G~l~~ 233 (318)
T KOG0530|consen 190 VITNTKGVISKAELERELNYTKDKIL--LVPNNE-SAWNYLKGLLEL 233 (318)
T ss_pred EEEeccCCccHHHHHHHHHHHHHHHH--hCCCCc-cHHHHHHHHHHh
Confidence 1111 2322 223345555666 666666 688766666554
No 455
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.39 E-value=0.54 Score=35.97 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000242 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPK 1727 (1801)
Q Consensus 1696 ~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~ 1727 (1801)
.+|...|..++..|++++|...|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35555566666666666666666666666554
No 456
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.29 E-value=0.45 Score=35.89 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000242 1697 FISQTAILEFKNGVADRGRSMFEGILSEYPKR 1728 (1801)
Q Consensus 1697 ~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~ 1728 (1801)
+++..|..+.+.|++++|+..|++++..+|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777888888888888888888888888864
No 457
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.00 E-value=21 Score=47.69 Aligned_cols=181 Identities=14% Similarity=0.193 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhCCh
Q 000242 1570 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQN 1642 (1801)
Q Consensus 1570 ~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~g~~ 1642 (1801)
.|...++-+++..+...+.| ..+...|+.++....+ +.+.|+..++||+..+... .....++.+|.+.+..
T Consensus 39 ~ai~CL~~~~~~~~l~p~~e-a~~~l~la~iL~~eT~-n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQE-ARVRLRLASILLEETE-NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHhccCCCCHHHH-HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35556666664444444333 5678888888877765 5899999999998777532 4455667888888888
Q ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHH-----HHh-CHHHHHHHHHHHHHhCC--CCChHHHHHHHHH--HHHHcCCH
Q 000242 1643 KLADELLYKMIKKFKH-SCKVWLRRVQRL-----LKQ-QQEGVQAVVQRALLSLP--RHKHIKFISQTAI--LEFKNGVA 1711 (1801)
Q Consensus 1643 ~~A~~~~~~~~k~~~~-~~~~w~~~a~~~-----~~~-~~~~A~~ll~ralk~~p--~~~~~~~~~~~a~--le~~~g~~ 1711 (1801)
. |.....+++..+.. ....|....+++ +.. ++..|.+.++....... ...+..+...+.. ++...+.+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 8 99999999987754 334455444433 233 67889999998877653 3333333333333 34466777
Q ss_pred HHHHHHHHHHHHhC----------CCCHHHHHHHHHHHH--HcCChHHHHHHHH
Q 000242 1712 DRGRSMFEGILSEY----------PKRTDLWSIYLDQEI--RLGDVDLIRGLFE 1753 (1801)
Q Consensus 1712 e~Ar~lfe~al~~~----------P~~~dlw~~y~~le~--k~gd~e~ar~lfe 1753 (1801)
+.+.+..+++.... +...++|....++.. ..|++..+.....
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~ 249 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLK 249 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888774322 224567888888764 6777666655443
No 458
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.50 E-value=4.1 Score=49.76 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHH-HHhC------CCCChHHHH
Q 000242 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA-LLSL------PRHKHIKFI 1698 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ra-lk~~------p~~~~~~~~ 1698 (1801)
.++..-...|.+..+...+..-.+-+...-.+++...+...++++-+ ++.+|.+++-+. +... |.....-+|
T Consensus 207 ~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 207 ELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheee
Confidence 44444445566666555555555555544456777777777777777 888888777663 1111 222234678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 000242 1699 SQTAILEFKNGVADRGRSMFEGILSE------------------YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1760 (1801)
Q Consensus 1699 ~~~a~le~~~g~~e~Ar~lfe~al~~------------------~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~ 1760 (1801)
.+++-++++.+.+..+..+|.+||+. -.++..+.+..+-++...|.+-.|..+|..++. .
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~--v 364 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH--V 364 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH--H
Confidence 88888899999999999999999862 123567888888888899999999999999988 4
Q ss_pred CchhHHHHHHHHHHHHH
Q 000242 1761 PPKKMKFLFKKYLEYEK 1777 (1801)
Q Consensus 1761 ~pk~~k~lw~~yl~~E~ 1777 (1801)
.-.++ .+|.+..+..+
T Consensus 365 fh~nP-rlWLRlAEcCi 380 (696)
T KOG2471|consen 365 FHRNP-RLWLRLAECCI 380 (696)
T ss_pred HhcCc-HHHHHHHHHHH
Confidence 44555 69998887533
No 459
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.41 E-value=61 Score=43.41 Aligned_cols=236 Identities=15% Similarity=0.015 Sum_probs=139.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc---hhhHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHhcCCCH
Q 000242 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE---ENEKLNIWVAYFNLEN-EYGNPPEEAVVKVFQRALQYCDPK 1626 (1801)
Q Consensus 1551 s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~e---e~e~l~lW~a~l~le~-~~g~~~~e~a~~vferAl~~~~~~ 1626 (1801)
++.+-+-|+=....+.++++|..+..++....+... ..+-+--|.++-+.-. ..+ +.+.|.++.++|+..-|..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~--~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG--DPEEAEDLARLALVQLPEA 491 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhcccc
Confidence 445555555556677888999888888877655421 1112245666665543 334 6799999999999988764
Q ss_pred ------HHHHHHHHHHHHhCChHHHHHHHHHHHHhc----CCCHHHHHHHHH--HHHHh-C--HHHHHHHHHH----HHH
Q 000242 1627 ------KVHLALLGLYERTEQNKLADELLYKMIKKF----KHSCKVWLRRVQ--RLLKQ-Q--QEGVQAVVQR----ALL 1687 (1801)
Q Consensus 1627 ------~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~----~~~~~~w~~~a~--~~~~~-~--~~~A~~ll~r----alk 1687 (1801)
-.+...+....-.|++.+|+.+...+.+.- .....+|..+.+ ++..+ + +.+....|.+ -+.
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 456666667777899999999988877642 345667776643 33333 2 2222222222 222
Q ss_pred hCCCCChHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHhcCC
Q 000242 1688 SLPRHKHIKFISQTAILEF----KNGVADRGRSMFEGILSEYPKRTDLWSI---YLDQEIRLGDVDLIRGLFERAISLSL 1760 (1801)
Q Consensus 1688 ~~p~~~~~~~~~~~a~le~----~~g~~e~Ar~lfe~al~~~P~~~dlw~~---y~~le~k~gd~e~ar~lferal~~~~ 1760 (1801)
..|-+. -....+++++. -.+...+|+.-++-....-|...+.|.. ++.+++..|+.++|....++....-.
T Consensus 572 q~~~~~--f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 572 QKPRHE--FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hcccch--hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 222221 12222222222 2345566777777666666777666654 57777889999999988888776322
Q ss_pred CchhHHHHHHHHHH-----HHHHcCCHHHHHHHHHH
Q 000242 1761 PPKKMKFLFKKYLE-----YEKSVGEEERIEYVKQK 1791 (1801)
Q Consensus 1761 ~pk~~k~lw~~yl~-----~E~~~G~~e~a~~v~~r 1791 (1801)
.+. ....|...+. +=...||.+.+.....+
T Consensus 650 ~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 650 NGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222 2244544432 12246787776554444
No 460
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=89.30 E-value=23 Score=42.72 Aligned_cols=261 Identities=12% Similarity=0.074 Sum_probs=146.6
Q ss_pred ccCCCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hcCCcchhhHHHHHHHHHHHHHH
Q 000242 1531 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQ---TINIREENEKLNIWVAYFNLENE 1603 (1801)
Q Consensus 1531 ~~~~~~a~~~fer~L~~~P~s----~~~W~~y~~~~~~~~e~d~Ar~~~eral~---~i~~~ee~e~l~lW~a~l~le~~ 1603 (1801)
.++-...++.|+.++..--++ +.+|.+++..|.-++++++|.+.-.--|. .+..+.... ..--.+.|....
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA--KssgNLGNtlKv 107 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA--KSSGNLGNTLKV 107 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc--cccccccchhhh
Confidence 345666788899998765543 55666677767666777777654432221 112111000 111223344445
Q ss_pred cCCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCC-------------hHHHHHHHHHHHHhcCCCHHHH
Q 000242 1604 YGNPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ-------------NKLADELLYKMIKKFKHSCKVW 1663 (1801)
Q Consensus 1604 ~g~~~~e~a~~vferAl~~~~~-------~~v~~~l~~i~~~~g~-------------~~~A~~~~~~~~k~~~~~~~~w 1663 (1801)
.|++ +.|.-..+|-+..... ...++.++++|-..|+ .+++.+.|+++++-|..+.++.
T Consensus 108 ~G~f--deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 108 KGAF--DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hccc--chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 5644 6666666665544321 2778888888865554 4567778888877665444444
Q ss_pred HHHHHHHH-------------Hh-CHHHHHHHHHHHHHh---CCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000242 1664 LRRVQRLL-------------KQ-QQEGVQAVVQRALLS---LPRH-KHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1725 (1801)
Q Consensus 1664 ~~~a~~~~-------------~~-~~~~A~~ll~ralk~---~p~~-~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~ 1725 (1801)
..++..+. -. +++.|...-+.-|.. +..+ ..-.++.+++..+.-.|+++.|.+.|.+.+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 44333322 22 455555444332221 1111 112467777777778899999999999876442
Q ss_pred ---CCC-H--HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCc--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000242 1726 ---PKR-T--DLWSIYLDQEIRLGDVDLIRGLFERAISL--SLPP--KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1726 ---P~~-~--dlw~~y~~le~k~gd~e~ar~lferal~~--~~~p--k~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl~~ 1795 (1801)
..+ . ...+.++..|.-..++++|..+|.|-+.. .+.. -.....|..-..| ...|..++|....+.+++.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~-~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF-NALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHH
Confidence 222 2 23445566666667888899998886651 1110 1122346554444 3467777777777777665
Q ss_pred H
Q 000242 1796 V 1796 (1801)
Q Consensus 1796 v 1796 (1801)
-
T Consensus 345 s 345 (639)
T KOG1130|consen 345 S 345 (639)
T ss_pred H
Confidence 4
No 461
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.11 E-value=21 Score=41.91 Aligned_cols=48 Identities=8% Similarity=0.064 Sum_probs=21.0
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Q 000242 1639 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1686 (1801)
Q Consensus 1639 ~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ral 1686 (1801)
.|++-+|...+++++..||.+.-+|..--..++-+ +....+..+++.+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 34444444455555555554444444333333333 3333334444433
No 462
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.09 E-value=0.73 Score=35.21 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCC
Q 000242 1661 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1691 (1801)
Q Consensus 1661 ~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~ 1691 (1801)
.+|+.+|..+... ++++|...|++|++..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566666666666 666666666666666554
No 463
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.03 E-value=57 Score=38.85 Aligned_cols=204 Identities=15% Similarity=0.117 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCC-------cchh--hHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Q 000242 1552 SFVWIKYMAFMLSMA-DVEKARSIAERALQTINI-------REEN--EKLNIWVAYFNLENEYGNP-PEEAVVKVFQRAL 1620 (1801)
Q Consensus 1552 ~~~W~~y~~~~~~~~-e~d~Ar~~~eral~~i~~-------~ee~--e~l~lW~a~l~le~~~g~~-~~e~a~~vferAl 1620 (1801)
+...++.+......+ +++.|...++||.+.++. ..+. -++.+...+++.+...+.+ ..++|..+.+-+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 355667777777888 999999999999887432 1111 1334555555665555522 1334444444444
Q ss_pred hcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh---CHHHHHHHHHHHHHhCCCCChHH
Q 000242 1621 QYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLSLPRHKHIK 1696 (1801)
Q Consensus 1621 ~~~~~-~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~---~~~~A~~ll~ralk~~p~~~~~~ 1696 (1801)
...+. ..++...+.+..+.++.+++.+.+.+|+.........|......+... ....|...+...+...-....-.
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~ 194 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ 194 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH
Confidence 44444 367767777777789999999999999998765555566555555433 55666666666554322211101
Q ss_pred HHHHHHHH----HHHc-CC------HHHHHHHHHHHHHhC--CCC--------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000242 1697 FISQTAIL----EFKN-GV------ADRGRSMFEGILSEY--PKR--------TDLWSIYLDQEIRLGDVDLIRGLFERA 1755 (1801)
Q Consensus 1697 ~~~~~a~l----e~~~-g~------~e~Ar~lfe~al~~~--P~~--------~dlw~~y~~le~k~gd~e~ar~lfera 1755 (1801)
|..-+-+ .... ++ .+....+++.+-+.. |-. .-+|.. +.-.++.++++.|...|+-+
T Consensus 195 -~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 195 -WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred -HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHH
Confidence 3332222 2222 11 344444455433322 222 226776 55667899999999999988
Q ss_pred Hh
Q 000242 1756 IS 1757 (1801)
Q Consensus 1756 l~ 1757 (1801)
++
T Consensus 273 l~ 274 (278)
T PF08631_consen 273 LH 274 (278)
T ss_pred HH
Confidence 75
No 464
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.02 E-value=88 Score=42.00 Aligned_cols=181 Identities=15% Similarity=0.106 Sum_probs=117.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH---
Q 000242 1551 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--- 1626 (1801)
Q Consensus 1551 s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l-~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~--- 1626 (1801)
-..++.+-+.++...|.+++|...+-+|= |.+.. .+-..+ +.+.-+ ..-..+..++++..|..
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-------d~~~aa~lle~~---~~~L~~---~~~lsll~~~~~~lP~~~l~ 412 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAAG-------DPEMAADLLEQL---EWQLFN---GSELSLLLAWLKALPAELLA 412 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhCC-------CHHHHHHHHHhh---hhhhhc---ccchHHHHHHHHhCCHHHHh
Confidence 36788888888888888888877665443 22211 111111 111110 11244556666666642
Q ss_pred ---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC--------CHHHHHH-HHHHHHHh-CHHHHHHHHHHHHHhCCCCC
Q 000242 1627 ---KVHLALLGLYERTEQNKLADELLYKMIKKFKH--------SCKVWLR-RVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1693 (1801)
Q Consensus 1627 ---~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~--------~~~~w~~-~a~~~~~~-~~~~A~~ll~ralk~~p~~~ 1693 (1801)
.+-+.++-......++.+|..+..++....+. ..--|.. .+.+.... +++.|..+-++++...|...
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 44444555556678999999999998876543 1223443 34444555 89999999999999998853
Q ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH--HHcCC
Q 000242 1694 ---HIKFISQTAILEFKNGVADRGRSMFEGILSE----YPKRTDLWSIYLDQE--IRLGD 1744 (1801)
Q Consensus 1694 ---~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~----~P~~~dlw~~y~~le--~k~gd 1744 (1801)
.+.+++..+....-.|++++|+.+...+.+. .--...+|..+.+.+ ..+|+
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 2467777788888899999999999998766 233456888885544 46673
No 465
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.88 E-value=16 Score=40.47 Aligned_cols=98 Identities=10% Similarity=0.007 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCC
Q 000242 1612 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLP 1690 (1801)
Q Consensus 1612 a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~-~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p 1690 (1801)
..++.+..-...++.-+|+.|.+. ..+.|+..|-++.... -+.+++-+.+|.||.+.+.++|.++|-++|...+
T Consensus 97 l~~L~~~tk~S~dP~llYy~Wsr~-----~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~ 171 (203)
T PF11207_consen 97 LERLQEETKNSQDPYLLYYHWSRF-----GDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSN 171 (203)
T ss_pred HHHHHHHHccCCCccHHHHHhhcc-----CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Confidence 333334433334445566655432 3455666666665543 2567777778887776678888888888887765
Q ss_pred CC--ChHHHHHHHHHHHHHcCCHHHH
Q 000242 1691 RH--KHIKFISQTAILEFKNGVADRG 1714 (1801)
Q Consensus 1691 ~~--~~~~~~~~~a~le~~~g~~e~A 1714 (1801)
.. -.++++..+|.++++.++++.|
T Consensus 172 ~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 172 PDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 43 3457777777777777777765
No 466
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=3.1 Score=46.53 Aligned_cols=100 Identities=14% Similarity=0.032 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 000242 1674 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1753 (1801)
Q Consensus 1674 ~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lfe 1753 (1801)
++..|...|.||+...|.. +..|.+-|..+++..+++.+-.-..++++..|+..-..+-+.........++.|...+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~--~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTV--ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhchHHHHHHHHHhcCCCc--chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 6889999999999999988 47899999999999999999999999999999988888888888888899999999999
Q ss_pred HHHhc--CCCchhHHHHHHHHHHH
Q 000242 1754 RAISL--SLPPKKMKFLFKKYLEY 1775 (1801)
Q Consensus 1754 ral~~--~~~pk~~k~lw~~yl~~ 1775 (1801)
||..+ ..++.....+|+.....
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHH
Confidence 99552 22222334577766553
No 467
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.61 E-value=7.1 Score=43.01 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChH----HHH
Q 000242 1627 KVHLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI----KFI 1698 (1801)
Q Consensus 1627 ~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~---~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~----~~~ 1698 (1801)
..|..++++|.+.|++++|.+.|.++..... .-.++|+..++..+.. ++..+...+.+|-......... .+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 6677888888888888888888888776552 3466777777777777 7777777777776554332111 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000242 1699 SQTAILEFKNGVADRGRSMFEGILSEYP 1726 (1801)
Q Consensus 1699 ~~~a~le~~~g~~e~Ar~lfe~al~~~P 1726 (1801)
..-|......+++..|-.+|-.++..+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 2223334456788888888877765554
No 468
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.49 E-value=52 Score=41.07 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Q 000242 1610 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSL 1689 (1801)
Q Consensus 1610 e~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~ 1689 (1801)
.-.+.+..|.+.+..+.-.++.++++|..+ ..++-..+++|++..+-+....-..++..|.+.+.+.|..+|.+|+..+
T Consensus 83 ~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 83 QIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIKKSKAAEFFGKALYRF 161 (711)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHHh
Confidence 556677777777777777788888888777 6667777777777665444444445555443336677777777777654
Q ss_pred -CCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHHcCChHHHHHHHHHHHh
Q 000242 1690 -PRHKHI---KFISQTAILEFKNGVADRGRSMFEGILSEYPK-RTDLWSIYL-DQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1690 -p~~~~~---~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~-~~dlw~~y~-~le~k~gd~e~ar~lferal~ 1757 (1801)
|.++.. ++|.++..+ --.+.+.-..+...+-..+.. +..+.+++. .-|....++..|..+....+.
T Consensus 162 I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 162 IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 322222 233333221 122455555555444433332 344444443 333445566667766666665
No 469
>PRK11712 ribonuclease G; Provisional
Probab=88.29 E-value=0.93 Score=57.47 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=54.2
Q ss_pred CCCCCcEEEEEEEEEeec--eEEEEEeCCceeEEeeccccCcc------------cccCcccccCCCCEEEEEEEEEecC
Q 000242 1331 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSED------------HVDNIETIYRAGEKVKVKILKVDKE 1396 (1801)
Q Consensus 1331 ~~~~G~~v~G~V~~v~~~--G~fV~l~~~~v~gl~~~sel~~~------------~~~~~~~~~~~Gd~V~~~Vl~id~e 1396 (1801)
...+|.+|.|+|.+|.+. ++||.|+. +-.|++|.+++... ......+.+++||.|-|.|.+-...
T Consensus 35 ~~~vGnIY~G~V~~v~pg~~AAFVdIG~-~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~Ke~~~ 113 (489)
T PRK11712 35 RGIVGNIYKGRVSRVLPGMQAAFVDIGL-DKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVKDPLG 113 (489)
T ss_pred ccccccEEEEEEeecCCCCceeEEeeCC-CccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEeCCcC
Confidence 445899999999999884 89999996 89999999998321 0112345689999999999986544
Q ss_pred CCeeEEee
Q 000242 1397 KRRISLGM 1404 (1801)
Q Consensus 1397 ~~ri~lsl 1404 (1801)
.+.-.++.
T Consensus 114 ~KG~~lT~ 121 (489)
T PRK11712 114 TKGARLTT 121 (489)
T ss_pred CCCCeEEE
Confidence 44344433
No 470
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=88.22 E-value=7.9 Score=46.35 Aligned_cols=131 Identities=15% Similarity=0.013 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhCChHHHHHHHHHHHH--hc-C---CCHHHHHHHHHHHHHh-CH
Q 000242 1608 PEEAVVKVFQRALQYCDPK-----KVHLALLGLYERTEQNKLADELLYKMIK--KF-K---HSCKVWLRRVQRLLKQ-QQ 1675 (1801)
Q Consensus 1608 ~~e~a~~vferAl~~~~~~-----~v~~~l~~i~~~~g~~~~A~~~~~~~~k--~~-~---~~~~~w~~~a~~~~~~-~~ 1675 (1801)
+-.+-...|+.|++.--.. -+|.++++.|...++|++|.+....-+. +. . ...+.--++++.+.-. .+
T Consensus 32 dcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~f 111 (639)
T KOG1130|consen 32 DCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAF 111 (639)
T ss_pred chhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhccc
Confidence 3466777888888776542 6788888888888888888776543221 11 1 1222333344444434 55
Q ss_pred HHHHHHHHHHHHhCCC----CChHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000242 1676 EGVQAVVQRALLSLPR----HKHIKFISQTAILEFKNGV-------------ADRGRSMFEGILSEYPKRTDLWSIYLDQ 1738 (1801)
Q Consensus 1676 ~~A~~ll~ralk~~p~----~~~~~~~~~~a~le~~~g~-------------~e~Ar~lfe~al~~~P~~~dlw~~y~~l 1738 (1801)
++|.-+..|-|..... -....++++++..|...|. .++++..|++|+..+-.+..+-..+.+-
T Consensus 112 deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr 191 (639)
T KOG1130|consen 112 DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDR 191 (639)
T ss_pred chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 5555444443322100 0012466777777765543 4677777777777666665555444443
No 471
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.94 E-value=81 Score=39.28 Aligned_cols=223 Identities=13% Similarity=0.119 Sum_probs=133.2
Q ss_pred hcCCHHHHHHHHHHHHHhcCCcchhh---HHHHHHHHHH------HHHHcCCCCHHHHHHHHHHHHhcC---CCH-----
Q 000242 1564 SMADVEKARSIAERALQTINIREENE---KLNIWVAYFN------LENEYGNPPEEAVVKVFQRALQYC---DPK----- 1626 (1801)
Q Consensus 1564 ~~~e~d~Ar~~~eral~~i~~~ee~e---~l~lW~a~l~------le~~~g~~~~e~a~~vferAl~~~---~~~----- 1626 (1801)
..|-+++|.++.++++.....-...+ +...-+..+- +....+ +..+|.+-...+++.+ |..
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~--~~~~al~~i~dm~~w~~r~p~~~Llr~ 364 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRG--DYVEALEEIVDMKNWCTRFPTPLLLRA 364 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 56778889999898887533211111 2111122222 233456 3466766666666554 331
Q ss_pred ---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHH----HHHHHHHHh-CHHHHHHHHHHHHHh--CCCC---C
Q 000242 1627 ---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL----RRVQRLLKQ-QQEGVQAVVQRALLS--LPRH---K 1693 (1801)
Q Consensus 1627 ---~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~----~~a~~~~~~-~~~~A~~ll~ralk~--~p~~---~ 1693 (1801)
.++.-++.....-+.++.|...|..|.+.- ...++|. ++|..|+++ +.+.-.+++++.--. ++-+ .
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRL 443 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHH
Confidence 455555555566788999999999999865 3444443 456666666 555555555543211 1111 1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHH----HHHHHHcCChHHHHHHHHHHHhc--CCCchh
Q 000242 1694 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIY----LDQEIRLGDVDLIRGLFERAISL--SLPPKK 1764 (1801)
Q Consensus 1694 ~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~d---lw~~y----~~le~k~gd~e~ar~lferal~~--~~~pk~ 1764 (1801)
...+++.||.+.+.++++.+|+..+.+.|+.. +..| +-..+ .......|+.-+++....-++.. +.|.-.
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 13688889999999999999999999998765 3223 22222 22334678888888888877762 444333
Q ss_pred HHHHHHHHH--HHHHHcCC--HHHHHHHHHH
Q 000242 1765 MKFLFKKYL--EYEKSVGE--EERIEYVKQK 1791 (1801)
Q Consensus 1765 ~k~lw~~yl--~~E~~~G~--~e~a~~v~~r 1791 (1801)
. .+|.--+ ++....|+ .+...+.|.+
T Consensus 523 v-qLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 523 V-QLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred H-HHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3 6776544 55666676 4444444443
No 472
>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]
Probab=87.83 E-value=2.9 Score=43.64 Aligned_cols=66 Identities=20% Similarity=0.372 Sum_probs=44.2
Q ss_pred CCCcEEEEEEEEEeeceEEEEEeCCceeEEeec----cccC-------cccccCcccccCCCCEEEEEEEEEecCCCee
Q 000242 1333 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHV----SELS-------EDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1400 (1801)
Q Consensus 1333 ~~G~~v~G~V~~v~~~G~fV~l~~~~v~gl~~~----sel~-------~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri 1400 (1801)
-.|+++.|.|+.+...|+|++.+| ++-++.. .++. ..+..+-.+....|..|+.+|+....+...|
T Consensus 80 fKGEVvdgvV~~Vnk~G~F~~~GP--l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~~~~~i 156 (170)
T KOG3298|consen 80 FKGEVVDGVVTKVNKMGVFARSGP--LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRVDETEI 156 (170)
T ss_pred cCCcEEEEEEEEEeeeeEEEeccc--eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEEeeeeE
Confidence 369999999999999999999986 3332211 1111 1111112236889999999999987555544
No 473
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.54 E-value=9.6 Score=42.85 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCchhH
Q 000242 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1765 (1801)
Q Consensus 1696 ~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~~~~~pk~~ 1765 (1801)
.++++|+|.+...|++=++.+-...+|..+|.+...++.-+......=+.++|+.-|..++. +.|.-+
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldpsla 298 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPSLA 298 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChhhH
Confidence 67888888888888888888888888888888888888777777777778888888888888 666544
No 474
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.49 E-value=6 Score=49.68 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=28.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000242 1703 ILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFERA 1755 (1801)
Q Consensus 1703 ~le~~~g~~e~Ar~lfe~al~~~P~~-~dlw~~y~~le~k~gd~e~ar~lfera 1755 (1801)
+++...+++++|-.+-++ +|+- .++++.|++++....++++|...|-+|
T Consensus 781 qlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 334445566666665554 3442 356777777766666666665555554
No 475
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=87.43 E-value=2.3 Score=41.02 Aligned_cols=60 Identities=23% Similarity=0.460 Sum_probs=48.7
Q ss_pred ccccccCCCCCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccccCCCCCcccCCEEEEEEEEE
Q 000242 355 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 422 (1801)
Q Consensus 355 ~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~~~~~~~vG~~v~~rVl~v 422 (1801)
+++.+.+ ..|.+|.|+|..+.+.-+++++++.+.++++.... + .++|..|.+|+.|+...
T Consensus 15 ~fi~lG~-~~gk~V~G~I~hvv~ddLYIDfG~KFhcVc~rp~~------~-~~~y~~G~rV~lrLkdl 74 (104)
T PF10246_consen 15 PFIQLGD-PEGKIVIGKIFHVVDDDLYIDFGGKFHCVCKRPAV------N-GEKYVRGSRVRLRLKDL 74 (104)
T ss_pred hhhhcCC-ccCCEEEEEEEEEecCceEEEeCCceeEEEecccc------c-ccccccCCEEEEEECCH
Confidence 4555666 57999999999999999999999999999985432 2 24799999999988644
No 476
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.31 E-value=1 Score=33.90 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC
Q 000242 1628 VHLALLGLYERTEQNKLADELLYKMIKKFKHS 1659 (1801)
Q Consensus 1628 v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~ 1659 (1801)
.++.++.+|.+.|++++|.+.|+++++.||++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45677778888888888888888888888764
No 477
>PRK11712 ribonuclease G; Provisional
Probab=87.20 E-value=1.2 Score=56.40 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=45.3
Q ss_pred CCCCEEEEEEEEEee--ceEEEEeCCCcEEEEEcccCCCc--cc-C---------CccccCCCCcEEEEEEEE
Q 000242 1243 SPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDG--YV-E---------SPEKEFPIGKLVAGRVLS 1301 (1801)
Q Consensus 1243 ~~G~~v~G~V~~v~~--~G~fV~l~~~v~g~v~~s~lsd~--~~-~---------~~~~~f~~G~~V~~~Vl~ 1301 (1801)
.+|.++.|+|.+|.+ .++||+||.+..||+|++|+... +. . ...+.+++||.|-+.|+.
T Consensus 37 ~vGnIY~G~V~~v~pg~~AAFVdIG~~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~K 109 (489)
T PRK11712 37 IVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVK 109 (489)
T ss_pred ccccEEEEEEeecCCCCceeEEeeCCCccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEe
Confidence 489999999999977 48999999999999999998421 10 0 112347789988887754
No 478
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.96 E-value=10 Score=47.57 Aligned_cols=97 Identities=12% Similarity=0.001 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcC---CCchhHHHHHH
Q 000242 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYPK-RTDLWSIYLDQE-IRLGDVDLIRGLFERAISLS---LPPKKMKFLFK 1770 (1801)
Q Consensus 1696 ~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~-~~dlw~~y~~le-~k~gd~e~ar~lferal~~~---~~pk~~k~lw~ 1770 (1801)
.++.+|.+.+.+.|-+.-|.+...-+++..|. ++-....++|.+ .+..+|+-...+|+..=..+ ..|. +.|.
T Consensus 343 L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN---~~yS 419 (665)
T KOG2422|consen 343 LALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN---FGYS 419 (665)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC---chHH
Confidence 45666777777889999999999999999988 666666677766 47788888888888762211 1221 3344
Q ss_pred HHHHH-HH-HcC--CHHHHHHHHHHHHHH
Q 000242 1771 KYLEY-EK-SVG--EEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1771 ~yl~~-E~-~~G--~~e~a~~v~~rAl~~ 1795 (1801)
.-+.+ .- +.- +.+.|...+.+|+..
T Consensus 420 ~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 420 LALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 44433 22 222 256778888888754
No 479
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=86.81 E-value=2.2 Score=43.55 Aligned_cols=60 Identities=27% Similarity=0.211 Sum_probs=45.7
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCc--c-----------cCCccccCCCCcEEEEEEEEEe
Q 000242 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG--Y-----------VESPEKEFPIGKLVAGRVLSVE 1303 (1801)
Q Consensus 1244 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~--~-----------~~~~~~~f~~G~~V~~~Vl~vd 1303 (1801)
+|+++.|+|++.+..|+.|.|+.--+.+|+...|... | -.+-.-.|..|+.|++||.++.
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~~ 75 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESEI 75 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEecccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEEE
Confidence 6999999999999999999999888999999988842 1 1222335679999999998876
No 480
>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]
Probab=86.56 E-value=1.6 Score=45.88 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=47.8
Q ss_pred CCCCEEEEEEEEEecCceEEEe--------CCCeEEeccCCCCCcc--cccCCCCCcccCCEEEEEEEEE-eCCeEEEE
Q 000242 363 KPGMVVKGKVIAVDSFGAIVQF--------PGGVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLGV-KSKRITVT 430 (1801)
Q Consensus 363 ~~G~~v~g~V~~v~~~G~~V~l--------~~~v~g~vp~~hls~~--~~~~~~~~~~vG~~v~~rVl~v-~~~~i~ls 430 (1801)
..|++|.++|..++..-+-|+| .+.+.|+++...+... ...++-+.|++|+-|.|+|++. ......||
T Consensus 67 ~~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~~y~LT 145 (193)
T KOG3409|consen 67 FVGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGSNYLLT 145 (193)
T ss_pred ccCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCCcEEEE
Confidence 3578888888887765544443 3468899998876543 2345667899999999999987 34455555
No 481
>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]
Probab=86.51 E-value=3.7 Score=42.90 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=39.8
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEEcccCCCc--cc--CCc-------cccCCCCcEEEEEEEEEe
Q 000242 1244 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG--YV--ESP-------EKEFPIGKLVAGRVLSVE 1303 (1801)
Q Consensus 1244 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s~lsd~--~~--~~~-------~~~f~~G~~V~~~Vl~vd 1303 (1801)
.|++|.|.|+.+++.|+|+++|+ ++.++.---+..+ |. +|| .+...+|..|+++|+...
T Consensus 81 KGEVvdgvV~~Vnk~G~F~~~GP-l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr 150 (170)
T KOG3298|consen 81 KGEVVDGVVTKVNKMGVFARSGP-LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTR 150 (170)
T ss_pred CCcEEEEEEEEEeeeeEEEeccc-eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEE
Confidence 59999999999999999999995 5554433222222 21 221 124567888888887765
No 482
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.10 E-value=1.3 Score=52.02 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=91.6
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH
Q 000242 1523 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN 1602 (1801)
Q Consensus 1523 ~~~e~~~~~~~~~~a~~~fer~L~~~P~s~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~ 1602 (1801)
.++.+++-++...++++.|.+++..+|.+..++..-+..++.+.....|..-+.+|+.. ++ |..+-.-|..|++-
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-n~--Dsa~~ykfrg~A~r-- 193 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-NP--DSAKGYKFRGYAER-- 193 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc-Cc--ccccccchhhHHHH--
Confidence 44455566777999999999999999999999999999999999999999999999964 43 22233557777653
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 000242 1603 EYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1654 (1801)
Q Consensus 1603 ~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~g~~~~A~~~~~~~~k 1654 (1801)
.++++ +.|...++.||+..-....--.+-...-+.++.++-+..|++...
T Consensus 194 llg~~--e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 194 LLGNW--EEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred Hhhch--HHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 45654 888999999998765543333333455555666666666666554
No 483
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=85.48 E-value=2.5 Score=40.84 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=47.2
Q ss_pred CCcceEEEEEEEEeceeEEEeecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEeecC
Q 000242 835 GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP 895 (1801)
Q Consensus 835 ~~G~~v~g~V~~i~~~~v~v~~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~~~ 895 (1801)
..|..|.|.|.++-++-++++| |+++-++|+....+ .+.|..|..|..++...+
T Consensus 22 ~~gk~V~G~I~hvv~ddLYIDf--G~KFhcVc~rp~~~-----~~~y~~G~rV~lrLkdlE 75 (104)
T PF10246_consen 22 PEGKIVIGKIFHVVDDDLYIDF--GGKFHCVCKRPAVN-----GEKYVRGSRVRLRLKDLE 75 (104)
T ss_pred ccCCEEEEEEEEEecCceEEEe--CCceeEEEeccccc-----ccccccCCEEEEEECCHh
Confidence 3588999999999999999999 99999999876554 467999999999998865
No 484
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.42 E-value=5.6 Score=43.83 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 000242 1553 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1632 (1801)
Q Consensus 1553 ~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l 1632 (1801)
..|..++.+|.+.|+.+.|.+.|.|+...... -..++++|+.++.+..-+++ ...+.....+|-.......-|...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~d--~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFGD--WSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhccchHHHH
Confidence 56788999999999999999999998865432 33467899999999888884 488888888887655432112221
Q ss_pred -------HHHHHHhCChHHHHHHHHHHHHhc
Q 000242 1633 -------LGLYERTEQNKLADELLYKMIKKF 1656 (1801)
Q Consensus 1633 -------~~i~~~~g~~~~A~~~~~~~~k~~ 1656 (1801)
+-.+...++|..|-+.|-.+...|
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 112233455556555555555444
No 485
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.36 E-value=1.5 Score=33.36 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000242 1696 KFISQTAILEFKNGVADRGRSMFEGILSEYP 1726 (1801)
Q Consensus 1696 ~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P 1726 (1801)
++|...|.++.+.|+++.|...|+++++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566777777777777777777777777666
No 486
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=85.22 E-value=3.2 Score=42.40 Aligned_cols=59 Identities=24% Similarity=0.232 Sum_probs=41.8
Q ss_pred CCCEEEEEEEEEecCceEEEeCCCeEEeccCCCCCcccc-------------cCCCCCcccCCEEEEEEEEE
Q 000242 364 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI-------------VKPGKKFKVGAELVFRVLGV 422 (1801)
Q Consensus 364 ~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~-------------~~~~~~~~vG~~v~~rVl~v 422 (1801)
+|+++.|+|++.+..|+.|+++=.-+-+||...|-.-.. ..-+-.|..|+.|++||..+
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~ 74 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESE 74 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEecccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEE
Confidence 599999999999999999999633467899988863211 11122357999999999987
No 487
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.21 E-value=21 Score=44.17 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=96.9
Q ss_pred hcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCCC-ChHHHH
Q 000242 1621 QYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRH-KHIKFI 1698 (1801)
Q Consensus 1621 ~~~~~~-~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~~~~~A~~ll~ralk~~p~~-~~~~~~ 1698 (1801)
+.+|.. ...++++.++.+.|+.+.|.++.+||+-.+.....-.+ ..+......-.+|--|. .+.+ .-..+.
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F--~~~~~~~~~g~~rL~~~-----~~eNR~fflal 106 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSF--SPFRSNLTSGNCRLDYR-----RPENRQFFLAL 106 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh--hhhhcccccCccccCCc-----cccchHHHHHH
Confidence 445554 78888888999999999999999888865421100000 00000000000000000 0111 113567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCch----hHHHHHHHH
Q 000242 1699 SQTAILEFKNGVADRGRSMFEGILSEYPK-RTDLWSIYLDQE-IRLGDVDLIRGLFERAISLSLPPK----KMKFLFKKY 1772 (1801)
Q Consensus 1699 ~~~a~le~~~g~~e~Ar~lfe~al~~~P~-~~dlw~~y~~le-~k~gd~e~ar~lferal~~~~~pk----~~k~lw~~y 1772 (1801)
.+|++.+.+.|-+..|.++..-++..+|. ++---.-++|++ .+.++++-...+++..... .... -+.+.|..-
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~-~~~~~~~~lPn~a~S~a 185 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK-CYRNWLSLLPNFAFSIA 185 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh-hhhhhhhhCccHHHHHH
Confidence 78888888999999999999999999998 555445555555 5788888888888775541 0100 011344444
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHHHH
Q 000242 1773 LEYEKSV--------------GEEERIEYVKQKAMEY 1795 (1801)
Q Consensus 1773 l~~E~~~--------------G~~e~a~~v~~rAl~~ 1795 (1801)
+.+.... .+.+.|....++|+..
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 4433222 2247788888888753
No 488
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.05 E-value=39 Score=46.31 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHH
Q 000242 1608 PEEAVVKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1684 (1801)
Q Consensus 1608 ~~e~a~~vferAl~~~~~--~~v~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~r 1684 (1801)
.++--++-|++|+..... .+.|-...++-.+++.|.+|..+|.--..+ ...++..||+++.+. .+++|--.|++
T Consensus 888 ~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Ye~ 964 (1265)
T KOG1920|consen 888 KIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMYER 964 (1265)
T ss_pred eHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 467778888888866543 257777888888888888888887665554 456788888888888 88888888877
Q ss_pred H
Q 000242 1685 A 1685 (1801)
Q Consensus 1685 a 1685 (1801)
+
T Consensus 965 ~ 965 (1265)
T KOG1920|consen 965 C 965 (1265)
T ss_pred h
Confidence 4
No 489
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.05 E-value=33 Score=42.44 Aligned_cols=111 Identities=17% Similarity=0.060 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCCH----HHHHHHHHHHHH-hCChHHHHHHHHHHHHhc---CCCHH----HHHHHHHHHHHh--C
Q 000242 1609 EEAVVKVFQRALQYCDPK----KVHLALLGLYER-TEQNKLADELLYKMIKKF---KHSCK----VWLRRVQRLLKQ--Q 1674 (1801)
Q Consensus 1609 ~e~a~~vferAl~~~~~~----~v~~~l~~i~~~-~g~~~~A~~~~~~~~k~~---~~~~~----~w~~~a~~~~~~--~ 1674 (1801)
+..+.+..+-.++..++. .-+++++.++.+ +.+.+.|+..++++..+- |...+ ....+++.+... .
T Consensus 25 Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s 104 (629)
T KOG2300|consen 25 IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQS 104 (629)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCC
Confidence 455555666555555553 445566654433 455666666666655433 22212 222333333333 3
Q ss_pred HHHHHHHHHHHHHhCCCC--ChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000242 1675 QEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKNGVADRGRSMFE 1719 (1801)
Q Consensus 1675 ~~~A~~ll~ralk~~p~~--~~~~~~~~~a~le~~~g~~e~Ar~lfe 1719 (1801)
+..|+.++.+|++.-... -|.++.+.+|++..-..|++-|.+++.
T Consensus 105 ~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 105 FPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred CchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 455566666665543222 234555556665555556666655533
No 490
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.91 E-value=1.5e+02 Score=39.58 Aligned_cols=188 Identities=15% Similarity=0.163 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHh-cCCCH----HHHHHHHHHHH-HhCChHHHHHHHHHHHHhcCC--CHHH----HHHHHHHHHHhCHHH
Q 000242 1610 EAVVKVFQRALQ-YCDPK----KVHLALLGLYE-RTEQNKLADELLYKMIKKFKH--SCKV----WLRRVQRLLKQQQEG 1677 (1801)
Q Consensus 1610 e~a~~vferAl~-~~~~~----~v~~~l~~i~~-~~g~~~~A~~~~~~~~k~~~~--~~~~----w~~~a~~~~~~~~~~ 1677 (1801)
..|...++-+++ ...+. .++++|+.++. .+.+++.|+..++++...... ..++ -..++.++.+.++..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 456677777773 33221 88999999876 679999999999999876632 2222 223344444445555
Q ss_pred HHHHHHHHHHhCCCCCh--HHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH----HHHHHHcCChHH
Q 000242 1678 VQAVVQRALLSLPRHKH--IKFISQTA--ILEFKNGVADRGRSMFEGILSEY--PKRTDLWSIY----LDQEIRLGDVDL 1747 (1801)
Q Consensus 1678 A~~ll~ralk~~p~~~~--~~~~~~~a--~le~~~g~~e~Ar~lfe~al~~~--P~~~dlw~~y----~~le~k~gd~e~ 1747 (1801)
|...+.++++......+ +...++|. .+....+++..|...++.+.... +.+..+...+ +.+..+.+.++.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 99999999988766332 22222332 23334579999999999987765 3444432222 223345676777
Q ss_pred HHHHHHHHHhc--CC------CchhHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHh
Q 000242 1748 IRGLFERAISL--SL------PPKKMKFLFKKYLEY--EKSVGEEERIEYVKQKAMEYVES 1798 (1801)
Q Consensus 1748 ar~lferal~~--~~------~pk~~k~lw~~yl~~--E~~~G~~e~a~~v~~rAl~~v~~ 1798 (1801)
+.+...++... .+ .+.+. ..|...+++ ....|+.+.+.......-++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL-~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQL-KALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 77777777441 01 22234 467777765 44678888888777777666654
No 491
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=84.75 E-value=1.4 Score=54.14 Aligned_cols=116 Identities=17% Similarity=0.057 Sum_probs=89.7
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000242 1635 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1713 (1801)
Q Consensus 1635 i~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~ 1713 (1801)
-+...+.++.|..+|.+++...|++..+|-..+..+++. .+-.|..=+.+|++..|.. .+.|++-|......+.+-+
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~--~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY--IKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh--hheeeeccHHHHhHHHHHH
Confidence 344567788888888889888888888888888777887 8888888888888888776 4788888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1714 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1714 Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
|+..|+......|.+.++-..+.....- -.+.-||+++.
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~-----vs~~~fe~ai~ 129 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECNKI-----VSEEKFEKAIL 129 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHHHH-----HHHHhhhhccc
Confidence 9999999888889888876666544321 23344666665
No 492
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.71 E-value=1e+02 Score=45.83 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHh-CHHHHHHHHHHHHHhC---C--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000242 1660 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL---P--RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1733 (1801)
Q Consensus 1660 ~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~---p--~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~ 1733 (1801)
.+-|......--.. +..+-.-.+.|++-.. | +..-.+.|+.+|++....|.+++|+...-.|....+ +.+..
T Consensus 1629 sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~ 1706 (2382)
T KOG0890|consen 1629 SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVL 1706 (2382)
T ss_pred chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHH
Confidence 45666655544443 4444444555554332 2 123358999999999999999999999999887764 57888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc
Q 000242 1734 IYLDQEIRLGDVDLIRGLFERAISL 1758 (1801)
Q Consensus 1734 ~y~~le~k~gd~e~ar~lferal~~ 1758 (1801)
..|.++.+.|+..+|..+++..++.
T Consensus 1707 E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1707 ERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh
Confidence 8999999999999999999999973
No 493
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=84.13 E-value=4.4 Score=38.13 Aligned_cols=65 Identities=23% Similarity=0.206 Sum_probs=51.3
Q ss_pred EEEEEEEEEeeceEEE-EEeCCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeecc
Q 000242 1337 IVIGQIKRVESYGLFI-TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1406 (1801)
Q Consensus 1337 ~v~G~V~~v~~~G~fV-~l~~~~v~gl~~~sel~~~~~~~~~~~~~~Gd~V~~~Vl~id~e~~ri~lslK~ 1406 (1801)
.+.|.|+.+.+.+.|- .|++ +..=++|+|=- +..-.=..-+||.|++.+-..|.+++||..-.|+
T Consensus 8 e~~G~V~e~Lp~~~frV~Len-G~~vla~isGK----mR~~rIrIl~GD~V~VE~spYDltkGRIiyR~~~ 73 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLEN-GVEVGAYASGR----MRKHRIRILAGDRVTLELSPYDLTKGRINFRHKD 73 (87)
T ss_pred EEEEEEEEECCCCEEEEEeCC-CCEEEEEeccc----eeeeeEEecCCCEEEEEECcccCCceeEEEEecC
Confidence 4789999999988775 8886 78888888742 2222224679999999999999999999988764
No 494
>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]
Probab=83.47 E-value=5.2 Score=42.18 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=54.5
Q ss_pred cCCCCEEEEEEEEEeCCEEEEEeC--------CCeEEEEEccccCCCCchhhhccccCCCCcEEEEEEEEEeCCCcEEEE
Q 000242 1027 VSIGQRVTGYVYKVDNEWALLTIS--------RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1098 (1801)
Q Consensus 1027 ~~~G~~v~g~V~~v~~~~~~v~l~--------~~~~g~l~~~~~~~~~~~~~~~~~~~~vG~~v~~~V~~~~~~~~~~~L 1098 (1801)
...|++|+++|..+...++.|+|. ...+|.|+.-++-....+.-.+.+.|.+|+-|.++|++...+. +..|
T Consensus 66 P~~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~-~y~L 144 (193)
T KOG3409|consen 66 PFVGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGS-NYLL 144 (193)
T ss_pred CccCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCC-cEEE
Confidence 478999999999999988887662 2568999887765443344456778999999999999865543 3444
Q ss_pred Ee
Q 000242 1099 VL 1100 (1801)
Q Consensus 1099 s~ 1100 (1801)
+.
T Consensus 145 Tt 146 (193)
T KOG3409|consen 145 TT 146 (193)
T ss_pred EE
Confidence 43
No 495
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=83.30 E-value=18 Score=45.83 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH-HHHHcCCC-CHHHHHHHHHHHHhcCCCHHHH
Q 000242 1552 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN-LENEYGNP-PEEAVVKVFQRALQYCDPKKVH 1629 (1801)
Q Consensus 1552 ~~~W~~y~~~~~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~-le~~~g~~-~~e~a~~vferAl~~~~~~~v~ 1629 (1801)
-.-|-.++.-.+..-+++-||+.|-|.-. . -|+.++. +..+..+. .++.... -..+.+ ..=+
T Consensus 585 ~~DW~~LA~~ALeAL~f~~ARkAY~rVRd-l----------~~L~li~EL~~~k~rge~P~~iLl--A~~~Ay---~gKF 648 (1081)
T KOG1538|consen 585 DTDWRELAMEALEALDFETARKAYIRVRD-L----------RYLELISELEERKKRGETPNDLLL--ADVFAY---QGKF 648 (1081)
T ss_pred cchHHHHHHHHHhhhhhHHHHHHHHHHhc-c----------HHHHHHHHHHHHHhcCCCchHHHH--HHHHHh---hhhH
Confidence 35699999999999999999999987752 2 2666554 32222211 1121110 000110 1123
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHH-----hc-----CCCHHH-HHHHHHHHHHh-CHHHHHHHHHH------HHHhCCC
Q 000242 1630 LALLGLYERTEQNKLADELLYKMIK-----KF-----KHSCKV-WLRRVQRLLKQ-QQEGVQAVVQR------ALLSLPR 1691 (1801)
Q Consensus 1630 ~~l~~i~~~~g~~~~A~~~~~~~~k-----~~-----~~~~~~-w~~~a~~~~~~-~~~~A~~ll~r------alk~~p~ 1691 (1801)
..-+.++.++|.-..|.++|.-+-- .| ++..+. ....|.+.... ++..|-+++-. |+.....
T Consensus 649 ~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d 728 (1081)
T KOG1538|consen 649 HEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGD 728 (1081)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhc
Confidence 3445677777777777777754321 01 112222 22344444444 44444444322 2222211
Q ss_pred CCh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000242 1692 HKH---------------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1756 (1801)
Q Consensus 1692 ~~~---------------~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal 1756 (1801)
+.- .+.+...|+.+.+...+.-|-++|.++= | -....+++...++.+.|..+-|+--
T Consensus 729 ~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g-------D-~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG-------D-LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc-------c-HHHHhhheeecccchHhHhhhhhCc
Confidence 110 1222222222223333333333333320 0 1123455667788888888877732
Q ss_pred hcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000242 1757 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1793 (1801)
Q Consensus 1757 ~~~~~pk~~k~lw~~yl~~E~~~G~~e~a~~v~~rAl 1793 (1801)
+-....+..|.+|..+...+++|.+.|.||=
T Consensus 801 ------e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 801 ------EFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ------cccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 3333678888888888888999999998873
No 496
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.98 E-value=12 Score=44.09 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCchhHHHHHHH
Q 000242 1695 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS---LSLPPKKMKFLFKK 1771 (1801)
Q Consensus 1695 ~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~---~~~~pk~~k~lw~~ 1771 (1801)
+.++..++..+...|+++.+.+.+++.+..+|.+..+|...+..+.+.|+...|+..|+++-. ..+.....-.+|+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 567788888888899999999999999999999999999999999999999999999988755 23444444467888
Q ss_pred HHHH
Q 000242 1772 YLEY 1775 (1801)
Q Consensus 1772 yl~~ 1775 (1801)
|.+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 8776
No 497
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=82.94 E-value=1.4 Score=48.72 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1703 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1703 ~le~~~g~~e~Ar~lfe~al~~~P~~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
++..+.++.+.|.++|.+++...|....-|+.++.+..+.|+.+.|-..|+..++
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 3344455555555555555555555555555555555555555555555555554
No 498
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.71 E-value=44 Score=36.85 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----HH
Q 000242 1554 VWIKYMAFM-LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK----KV 1628 (1801)
Q Consensus 1554 ~W~~y~~~~-~~~~e~d~Ar~~~eral~~i~~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~~~~----~v 1628 (1801)
.|..+=.+. .+......|-..|+.+++.+.... .......++..+.++.. -.
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~-----------------------~~~~~~~ekf~~~n~~t~Ya~la 91 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKK-----------------------PKSIAAAEKFVQANGKTIYAVLA 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------------chhHHHHHHHHhhccccHHHHHH
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000242 1629 HLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1704 (1801)
Q Consensus 1629 ~~~l~~i~~~~g~~~~A~~~~~~~~k~~~~~---~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~l 1704 (1801)
-+.++..+...+++++|...++.++..-.+. .-+-++++..++.. ++++|..++...-...=.. ...-.-+.+
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~---~~~elrGDi 168 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA---IVAELRGDI 168 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH---HHHHHhhhH
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Q 000242 1705 EFKNGVADRGRSMFEGILSEYPKRT 1729 (1801)
Q Consensus 1705 e~~~g~~e~Ar~lfe~al~~~P~~~ 1729 (1801)
+...|+-++||+-|++++.+.+...
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCChH
No 499
>cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=82.60 E-value=1.1 Score=38.96 Aligned_cols=57 Identities=14% Similarity=0.306 Sum_probs=43.7
Q ss_pred CEEEEEEEEEeCCEEEEEeCCCeEEEEEccccCCCCchhhhc-cccCCCCcEEEEEEEEE
Q 000242 1031 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-QRRFHIGKAVTGHVLSI 1089 (1801)
Q Consensus 1031 ~~v~g~V~~v~~~~~~v~l~~~~~g~l~~~~~~~~~~~~~~~-~~~~~vG~~v~~~V~~~ 1089 (1801)
...++.|+.+.++++.|++.. .|.+.+...+.+.++..++ .+++++|+.+.+++...
T Consensus 2 S~htA~VQh~~kdfAvvSL~~--t~~L~a~p~~sHLNdtfrf~seklkvG~~l~v~lk~~ 59 (69)
T cd05701 2 SRHTAIVQHADKDFAIVSLAT--TGDLAAFPTRSHLNDTFRFDSEKLSVGQCLDVTLKDP 59 (69)
T ss_pred CccchhhhhhhhceEEEEeec--cccEEEEEchhhccccccccceeeeccceEEEEEecC
Confidence 356788999999999999964 4566666666666666555 67899999999988753
No 500
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.46 E-value=1.2 Score=52.39 Aligned_cols=118 Identities=14% Similarity=-0.044 Sum_probs=94.3
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000242 1636 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1714 (1801)
Q Consensus 1636 ~~~~g~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~~-~~~~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~A 1714 (1801)
....|.++.|.+.|.+++.+.|.+..++...+..+++. ++..|.+-+..|+.++|......-|..||. .-+|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~--rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE--RLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH--HHhhchHHH
Confidence 34678899999999999999999999999999999999 999999999999999998754344555554 457899999
Q ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000242 1715 RSMFEGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1757 (1801)
Q Consensus 1715 r~lfe~al~~~P~-~~dlw~~y~~le~k~gd~e~ar~lferal~ 1757 (1801)
+..|+.+++..-+ ....|..-.. -..+.++.-|..++|+..
T Consensus 202 a~dl~~a~kld~dE~~~a~lKeV~--p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSATLKEVF--PNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccHHHHHHHHHhc--cchhhhhhchhHHHHHHH
Confidence 9999999887543 5567776432 345566777788888776
Done!