Query 000242
Match_columns 1801
No_of_seqs 587 out of 4558
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 18:48:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000242.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_18-22//hhsearch_pdb/000242hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 1.0 1 1 250.1 27.4 211 1125-1410 6-220 (285)
2 3go5_A Multidomain protein wit 1.0 1 1 230.9 29.1 224 450-714 5-234 (285)
3 4e6h_A MRNA 3'-END-processing 1.0 1 1 222.7 26.9 238 1552-1797 302-572 (679)
4 4e6h_A MRNA 3'-END-processing 1.0 1 1 204.6 33.1 226 1538-1772 329-584 (679)
5 2ond_A Cleavage stimulation fa 1.0 1 1 200.7 28.9 240 1549-1797 5-272 (308)
6 2uy1_A Cleavage stimulation fa 1.0 1 1 199.6 29.6 222 1551-1797 171-415 (493)
7 2ooe_A Cleavage stimulation fa 1.0 1 1 196.6 30.3 238 1552-1798 230-495 (530)
8 2uy1_A Cleavage stimulation fa 1.0 1 1 190.2 23.6 250 1534-1792 64-380 (493)
9 2ooe_A Cleavage stimulation fa 1.0 1 1 186.5 31.5 211 1538-1757 258-491 (530)
10 2ond_A Cleavage stimulation fa 1.0 1 1 181.6 24.9 221 1535-1765 33-275 (308)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=1.00 E-value=1 Score=250.10 Aligned_cols=211 Identities=19% Similarity=0.136 Sum_probs=181.9
Q ss_pred CCCEEEEEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCC
Q ss_conf 99889999999960867299994993499992422343345799999888888999887999899999999643778831
Q 000242 1125 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1204 (1801)
Q Consensus 1125 ~G~iv~g~V~~i~~~~~g~~V~l~~~~~G~i~~sel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~id~~~~~~~ 1204 (1801)
.|++++|+|++++++ |+||+++ +.+|++|.+|+ |. ++|+.|+|+|+. |. .+
T Consensus 6 ~G~~v~g~V~~~~~~--G~fv~~~-g~egllp~se~------------------~~---~vGdevev~v~~-d~----~~ 56 (285)
T 3go5_A 6 LASFIVGLIIDENDR--FYFVQKD-GQTYALAKEEG------------------QH---TVGDTVKGFAYT-DM----KQ 56 (285)
T ss_dssp TTEEEEEEEEEECSS--EEEEEET-TEEEEEEGGGC------------------CC---CTTSEEEEEEEE-CT----TS
T ss_pred CCCEEEEEEEEEECC--EEEEECC-CEEEEEEHHHC------------------CC---CCCCEEEEEEEE-CC----CC
T ss_conf 999999999999798--8999819-96999998998------------------61---459999999999-89----99
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE-ECEEEEEECC-CCEEEEECCCCCCCCC
Q ss_conf 5999512345688878889998888987622111126999989999999896-1519999699-8179998656798323
Q 000242 1205 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSR-KLDAKVLLSNLSDGYV 1282 (1801)
Q Consensus 1205 ~i~lS~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~-~~G~fV~l~~-~v~g~v~~~~lsd~~~ 1282 (1801)
++.+|++.+ .+++|+.+.|.|++++ ++|+||++|. +++|+||+++++|...
T Consensus 57 r~iat~~~p---------------------------~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~ 109 (285)
T 3go5_A 57 KLRLTTLEV---------------------------TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKE 109 (285)
T ss_dssp CEEEECSCC---------------------------CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGG
T ss_pred CEEEECCCC---------------------------CCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEHHHCCCCCC
T ss_conf 899861253---------------------------45699999999999856854999989877089999899976434
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECEEEE-EEECCCEE
Q ss_conf 8966558899599999999947999899997237-651122111255677789969999999975131899-99379535
Q 000242 1283 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI-TIENTNLV 1360 (1801)
Q Consensus 1283 ~~~~~~f~~G~~V~~~Vl~vd~~~~ri~lSlk~~-~~~~~~~~~~~~~~~~~~G~~v~G~V~~i~~~G~fV-~l~~~~v~ 1360 (1801)
. .+++||.+.++ +.+|+ ++||.+|+|+. ..+||.. ....+++|++|+|+|+++++||+|| .+++ ++.
T Consensus 110 ~----~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~~----~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~-g~~ 178 (285)
T 3go5_A 110 L----WPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLAR----PAYNNMQNQNWPAIVYRLKLSGTFVYLPEN-NML 178 (285)
T ss_dssp G----SCCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHCC----CCCSCCTTCEEEEEEEEEETTEEEEEETTT-TEE
T ss_pred C----CCCCCCEEEEE-EEECC-CCCEEEEEHHHHHCCHHHH----HHHHCCCCCEEEEEEEEEECCCEEEEEECC-CEE
T ss_conf 6----66899999999-99999-9969998203110164464----465379999999999999179479999289-859
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCC
Q ss_conf 87640235721225922113789799999999736898258830244457
Q 000242 1361 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1410 (1801)
Q Consensus 1361 gl~~~sels~~~~~~~~~~~~~Gd~V~~~V~~id~e~~ri~lslk~~~~~ 1410 (1801)
||+|+||+++ .+++||.|+|+|+++|++++||+||+|+..++
T Consensus 179 Glih~SEl~~--------~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~ 220 (285)
T 3go5_A 179 GFIHPSERYA--------EPRLGQVLDARVIGFREVDRTLNLSLKPRSFE 220 (285)
T ss_dssp EEECGGGCSS--------CCCTTCEEEEEEEEEETTTTEEEEECSCCCCC
T ss_pred EEEEHHHCCC--------CCCCCCEEEEEEEEEECCCCEEEEEECHHHHH
T ss_conf 9989898426--------69999999999999988999599993744511
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=1.00 E-value=1 Score=230.91 Aligned_cols=224 Identities=17% Similarity=0.112 Sum_probs=188.7
Q ss_pred CCCCEEEEEEEEEEECEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 79969999999996021899992994998206555779889997786679799999999807999699998618997751
Q 000242 450 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 529 (1801)
Q Consensus 450 ~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~~el~~~~~~~~~~~~~vG~~v~~rVl~~d~~~~~i~lS~k~~~~~~~~ 529 (1801)
..|+++.|+|+++.++|+||++ ++..||+|.+++.. ++|+.++|.|+ .|. ++|+.+|.+.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~-~g~egllp~se~~~----------~vGdevev~v~-~d~-~~r~iat~~~------- 64 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQK-DGQTYALAKEEGQH----------TVGDTVKGFAY-TDM-KQKLRLTTLE------- 64 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEE-TTEEEEEEGGGCCC----------CTTSEEEEEEE-ECT-TSCEEEECSC-------
T ss_pred CCCCEEEEEEEEEECCEEEEEC-CCEEEEEEHHHCCC----------CCCCEEEEEEE-ECC-CCCEEEECCC-------
T ss_conf 6999999999999798899981-99699999899861----------45999999999-989-9989986125-------
Q ss_pred CCCCCCCCEEEEEEEEEE-CCCEEEEEEECC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEC
Q ss_conf 000369986999999990-370899998759-433999466556763311112212357974754799642798499932
Q 000242 530 DDLVKLGSLVSGVVDVVT-PNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 607 (1801)
Q Consensus 530 ~~~~~vG~iv~g~V~~v~-~~g~~V~i~~~~-~~~g~i~~~~lsd~~~~~~~l~~~~k~G~~i~~~l~~d~~~~~i~ls~ 607 (1801)
+.+++|+++.|+|++++ ++|+||.+ +. +.+|+||.+++++.. ..++++||++...+.+|+ ++|+.+|+
T Consensus 65 -p~~~~G~~~~g~V~~v~~~~GaFVdi--G~~~~d~lvp~sel~~~~------~~~~~~Gd~v~v~l~iD~-~~Ri~ls~ 134 (285)
T 3go5_A 65 -VTATQDQFGWGRVTEVRKDLGVFVDT--GLPDKEIVVSLDILPELK------ELWPKKGDQLYIRLEVDK-KDRIWGLL 134 (285)
T ss_dssp -CCSCSSSCEEEEEEEEETTTEEEEEC--SCTTCCEEEEGGGSCSSG------GGSCCTTCEEEEEEEECT-TSCEEEEE
T ss_pred -CCCCCCCEEEEEEEEECCCCEEEEEE--CCCCCEEEEEHHHCCCCC------CCCCCCCCEEEEEEEECC-CCCEEEEE
T ss_conf -34569999999999985685499998--987708999989997643------466689999999999999-99699982
Q ss_pred CCH-HHCHHHCCCCCCCCCCCCCEEEEEEEEEECCEEEE-EECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 301-10021017874355789988999999993683999-9799949974177657532359545866798999999974
Q 000242 608 KYS-LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV-RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 685 (1801)
Q Consensus 608 K~~-l~~~~~~~~~~~~~~~~g~~~~G~V~~i~~~G~fV-~f~~gi~Glv~~s~l~~~~~~~~~~~~~~Gq~v~~~V~~i 685 (1801)
|+. ..++|... .+.+++|+.+.|+|.+++++|+|| .+.+++.||+|+|+++ +.+++||.|+|+|+++
T Consensus 135 k~~~~~~~~~~~---~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~--------~~l~~Gd~v~~~V~~i 203 (285)
T 3go5_A 135 AYQEDFQRLARP---AYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERY--------AEPRLGQVLDARVIGF 203 (285)
T ss_dssp CCHHHHHHHCCC---CCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCS--------SCCCTTCEEEEEEEEE
T ss_pred HHHHHCCHHHHH---HHHCCCCCEEEEEEEEEECCCEEEEEECCCEEEEEEHHHCC--------CCCCCCCEEEEEEEEE
T ss_conf 031101644644---65379999999999999179479999289859998989842--------6699999999999999
Q ss_pred ECCCCEEEEEECCCCCCC--CCHHHHHHHHH
Q ss_conf 089983999513554578--87035788776
Q 000242 686 NSETGRITLSLKQSCCSS--TDASFMQEHFL 714 (1801)
Q Consensus 686 d~~~~rl~lSlk~~~~~~--~~~~~~~~~~~ 714 (1801)
|++++|+.||+|+..... .++..+..||.
T Consensus 204 d~~d~kI~LSlk~~~~~~~~~~a~~il~~L~ 234 (285)
T 3go5_A 204 REVDRTLNLSLKPRSFEMLENDAQMILTYLE 234 (285)
T ss_dssp ETTTTEEEEECSCCCCCCCCHHHHHHHHHHH
T ss_pred ECCCCEEEEEECHHHHHCCCHHHHHHHHHHH
T ss_conf 8899959999374451122348999999998
No 3
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=222.75 Aligned_cols=238 Identities=14% Similarity=0.228 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHCC
Q ss_conf 999999999999627-------99999999999998517710001799999999999990999989999-9999999419
Q 000242 1552 SFVWIKYMAFMLSMA-------DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV-KVFQRALQYC 1623 (1801)
Q Consensus 1552 ~~~W~~y~~~~~~~~-------e~d~Ar~~~eral~~ip~~ee~e~l~lW~a~l~le~~~g~~~~e~a~-~vferAl~~~ 1623 (1801)
..+|..|+.|+.... ...+.+.+|++|+..+|... .+|+.|+.++...+ +.+.|+ .+|+||+..+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~-----~lW~~ya~~~~~~~--~~~~a~r~il~rAi~~~ 374 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP-----EIWFNMANYQGEKN--TDSTVITKYLKLGQQCI 374 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH-----HHHHHHHHHHHHHS--CCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHC
T ss_conf 999999999998487666410168999999999998769977-----99999999998628--67899999999999868
Q ss_pred CC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-----------CC-----------CHHHHHHHHHHHHHH-CHHHHH
Q ss_conf 98-9999999999999189089999999999963-----------79-----------899999999999972-899999
Q 000242 1624 DP-KKVHLALLGLYERTEQNKLADELLYKMIKKF-----------KH-----------SCKVWLRRVQRLLKQ-QQEGVQ 1679 (1801)
Q Consensus 1624 ~~-~~i~~~l~~i~~~~~~~~~A~~~~~~~~k~~-----------~~-----------~~~~w~~~a~~~~~~-~~e~A~ 1679 (1801)
|. ..+|+.++.++++.+++++|+++|++++... |. ...+|..|+.++.+. ..+.||
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98779999999999984889999999999998878776666411674124555411336999999999998708889999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999871999785999999999999869-9899999999989769998999999999999929948999999999826
Q 000242 1680 AVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1758 (1801)
Q Consensus 1680 ~ll~ralk~~p~~~~~~~~~~~a~le~~~g-~~e~Ar~lfe~al~~~P~~~diw~~y~~le~k~g~~e~Ar~lferal~~ 1758 (1801)
++|++|++..|... ..+|..+|.+|++.+ +.++||.+|+++++.+|++..+|..|++++...|+.++||.+|+||+..
T Consensus 455 ~vf~~A~~~~~~~~-~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 455 KIFGKCRRLKKLVT-PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHTGGGSC-THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999997368988-69999999999996898899999999999878995399999999998089778999999999871
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 999134999999999999991999999999999999998
Q 000242 1759 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797 (1801)
Q Consensus 1759 ~~~pk~~k~lw~~yl~~E~~~Gd~~~~~~v~~rAle~v~ 1797 (1801)
..+++..+.+|..|+.||.++|+.+.++.+..|+.+...
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 688789999999999999986999999999999998689
No 4
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=204.56 Aligned_cols=226 Identities=9% Similarity=0.048 Sum_probs=166.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99999999809999999999999999627999999-99999998517710001799999999999990999989999999
Q 000242 1538 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR-SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1616 (1801)
Q Consensus 1538 ~~~fer~l~~~P~s~~~W~~y~~~~~~~~e~d~Ar-~~~eral~~ip~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vf 1616 (1801)
...|+++|...|.++.+|+.|+.++...++.+.|+ .+|+||+...|... .+|++|+.++...+ ..+.|+.+|
T Consensus 329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~-----~Lwl~~a~~ee~~~--~~e~aR~iy 401 (679)
T 4e6h_A 329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA-----VLAFSLSEQYELNT--KIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHC--CHHHHHHHH
T ss_conf 99999999876997799999999998628678999999999998689877-----99999999999848--899999999
Q ss_pred HHHHHCC-----------CC------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Q ss_conf 9999419-----------98------------999999999999918908999999999996-37989999999999997
Q 000242 1617 QRALQYC-----------DP------------KKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLK 1672 (1801)
Q Consensus 1617 erAl~~~-----------~~------------~~i~~~l~~i~~~~~~~~~A~~~~~~~~k~-~~~~~~~w~~~a~~~~~ 1672 (1801)
++++... |. ..+|+.++.++.+.+..+.|+.+|.++++. .+....+|..++.++.+
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99998878776666411674124555411336999999999998708889999999999973689886999999999999
Q ss_pred H--CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHCCCHHH
Q ss_conf 2--89999999999987199978599999999999986998999999999897699---989999999999999299489
Q 000242 1673 Q--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP---KRTDLWSIYLDQEIRLGDVDL 1747 (1801)
Q Consensus 1673 ~--~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P---~~~diw~~y~~le~k~g~~e~ 1747 (1801)
. +.+.|+.+|+++++.+|.. ..+|..|++++...|+.++||.+|++++...| +..++|..|+++|.+.|+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~~p~~--~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKYFATD--GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTSCCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 6898899999999999878995--39999999999808977899999999987168878999999999999998699999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999982699913499999999
Q 000242 1748 IRGLFERAISLSLPPKKMKFLFKKY 1772 (1801)
Q Consensus 1748 Ar~lferal~~~~~pk~~k~lw~~y 1772 (1801)
++.+.+|+.........++.+..+|
T Consensus 560 ~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999998689973899999984
No 5
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=200.72 Aligned_cols=240 Identities=16% Similarity=0.267 Sum_probs=209.0
Q ss_pred CCCHHHHHHHHHHHHHC----CCH----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-------CCCCCH----
Q ss_conf 99999999999999962----799----99999999999851771000179999999999999-------099998----
Q 000242 1549 PNSSFVWIKYMAFMLSM----ADV----EKARSIAERALQTINIREENEKLNIWVAYFNLENE-------YGNPPE---- 1609 (1801)
Q Consensus 1549 P~s~~~W~~y~~~~~~~----~e~----d~Ar~~~eral~~ip~~ee~e~l~lW~a~l~le~~-------~g~~~~---- 1609 (1801)
|.+...|..|+.+..+. .+. ++|+..|++++...|... .+|..|+.++.. .| +.
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~-----~~w~~~~~~~~~~~~~l~~~g--~~~~~~ 77 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKG--DMNNAK 77 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHTS--CCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHCHHHHHCC--CHHHCC
T ss_conf 9999999999999874966688558999999999999998768987-----999999999987353433125--400000
Q ss_pred ---HHHHHHHHHHHH-CCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHH-CHHHHHHHH
Q ss_conf ---999999999994-1998-999999999999918908999999999996379899-999999999972-899999999
Q 000242 1610 ---EAVVKVFQRALQ-YCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK-VWLRRVQRLLKQ-QQEGVQAVV 1682 (1801)
Q Consensus 1610 ---e~a~~vferAl~-~~~~-~~i~~~l~~i~~~~~~~~~A~~~~~~~~k~~~~~~~-~w~~~a~~~~~~-~~e~A~~ll 1682 (1801)
+.|+.+|+||++ ..|. ..+|..++.++.+.+++++|..+|+++++..|.+.. +|..|+.++.+. ++++|+.+|
T Consensus 78 ~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 01699999999999985952479999989998855899999999999981536673589999999999844889999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-C
Q ss_conf 9998719997859999999999998-6998999999999897699989999999999999299489999999998269-9
Q 000242 1683 QRALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS-L 1760 (1801)
Q Consensus 1683 ~ralk~~p~~~~~~~~~~~a~le~~-~g~~e~Ar~lfe~al~~~P~~~diw~~y~~le~k~g~~e~Ar~lferal~~~-~ 1760 (1801)
++|++..|... .+|..++.+++. .|++++|+.+|++++..+|.+.++|..|++++.+.|+.++|+.+|++++... +
T Consensus 158 ~~a~~~~p~~~--~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKAREDARTRH--HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTCCT--HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHCCCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 99985689887--9999999999987599799999999998767882999999999999889989999999999745689
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9134999999999999991999999999999999998
Q 000242 1761 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797 (1801)
Q Consensus 1761 ~pk~~k~lw~~yl~~E~~~Gd~~~~~~v~~rAle~v~ 1797 (1801)
+|.....+|..|+.++..+|+.+.+..++.+|++...
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 9899999999999999984998999999999998765
No 6
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=199.63 Aligned_cols=222 Identities=17% Similarity=0.188 Sum_probs=157.1
Q ss_pred CHHHHHHHHHHHHHCC---C----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999999999627---9----99999999999985177100017999999999999909999899999999999419
Q 000242 1551 SSFVWIKYMAFMLSMA---D----VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1623 (1801)
Q Consensus 1551 s~~~W~~y~~~~~~~~---e----~d~Ar~~~eral~~ip~~ee~e~l~lW~a~l~le~~~g~~~~e~a~~vferAl~~~ 1623 (1801)
+...|..|+.+..... + .++++.+|++|+...|... .+|+.|+.++...+ +.+.|+.+|+||++.
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~-----~lW~~ya~~~~~~~--~~~~ar~i~erAi~~- 242 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE-----EVYFFYSEYLIGIG--QKEKAKKVVERGIEM- 242 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH-----HHHHHHHHHHHHTT--CHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHCC--CHHHHHHHHHHHHHC-
T ss_conf 2999999999986298657621259999999999987289989-----99999999998759--989999999998718-
Q ss_pred CCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHH-CHHHHHHHHHHHHHH
Q ss_conf 989-999999999999189089999999999963-------------79899999999999972-899999999999871
Q 000242 1624 DPK-KVHLALLGLYERTEQNKLADELLYKMIKKF-------------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1688 (1801)
Q Consensus 1624 ~~~-~i~~~l~~i~~~~~~~~~A~~~~~~~~k~~-------------~~~~~~w~~~a~~~~~~-~~e~A~~ll~ralk~ 1688 (1801)
|.. .+|+.++.+.. .++ .++++...+ +....+|..|+.++.+. ..+.|+.+|++| +
T Consensus 243 P~~~~l~~~y~~~~e----~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~- 313 (493)
T 2uy1_A 243 SDGMFLSLYYGLVMD----EEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G- 313 (493)
T ss_dssp CCSSHHHHHHHHHTT----CTH---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-
T ss_pred CCCHHHHHHHHHHCC----HHH---HHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-H-
T ss_conf 996999999876510----568---9999999998611101223204561899999999998717889999999986-2-
Q ss_pred CCCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 999785999999999999869-9899999999989769998999999999999929948999999999826999134999
Q 000242 1689 LPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1767 (1801)
Q Consensus 1689 ~p~~~~~~~~~~~a~le~~~g-~~e~Ar~lfe~al~~~P~~~diw~~y~~le~k~g~~e~Ar~lferal~~~~~pk~~k~ 1767 (1801)
.|... ..+|..+|.+|+..+ +.++||.+|+.++..+|++.++|..|++++.+.|+.++||.+|+++. +.. .
T Consensus 314 ~~~~~-~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~-~ 385 (493)
T 2uy1_A 314 NEGVG-PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTS-R 385 (493)
T ss_dssp TSCCC-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBH-H
T ss_pred CCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HHH-H
T ss_conf 77888-599999999999878996899999999998789978999999999987598777999999999------899-9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999991999999999999999998
Q 000242 1768 LFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1797 (1801)
Q Consensus 1768 lw~~yl~~E~~~Gd~~~~~~v~~rAle~v~ 1797 (1801)
+|..|++||..+|+.+.++.+++++++.+.
T Consensus 386 lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 386 MWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 999999999977999999999999999845
No 7
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=196.56 Aligned_cols=238 Identities=17% Similarity=0.268 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHCC----CH----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-------CCCCCHH------
Q ss_conf 999999999999627----99----99999999999851771000179999999999999-------0999989------
Q 000242 1552 SFVWIKYMAFMLSMA----DV----EKARSIAERALQTINIREENEKLNIWVAYFNLENE-------YGNPPEE------ 1610 (1801)
Q Consensus 1552 ~~~W~~y~~~~~~~~----e~----d~Ar~~~eral~~ip~~ee~e~l~lW~a~l~le~~-------~g~~~~e------ 1610 (1801)
..+|..|+.+..... +. .++..+|++|+...|... .+|..|+.++.. .|+. +
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~-----~~w~~~~~~~~~~~~~~~~~g~~--~~a~~~~ 302 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDM--NNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHTTTCC--HHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHCHHHHHCCCH--HHHHHHH
T ss_conf 9999999999870975577512688999999999998578977-----99999999999835465532651--2212114
Q ss_pred -HHHHHHHHHHH-CCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHH-CHHHHHHHHHHH
Q ss_conf -99999999994-1998-99999999999991890899999999999637989-9999999999972-899999999999
Q 000242 1611 -AVVKVFQRALQ-YCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-KVWLRRVQRLLKQ-QQEGVQAVVQRA 1685 (1801)
Q Consensus 1611 -~a~~vferAl~-~~~~-~~i~~~l~~i~~~~~~~~~A~~~~~~~~k~~~~~~-~~w~~~a~~~~~~-~~e~A~~ll~ra 1685 (1801)
.|+.+|+||++ .+|. ..+|..++.++.+.|++++|+.+|++++...|.++ .+|..|+.++.+. +.++|+++|++|
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999999986866579999999999863889999999999857645683099999999999806889999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCH
Q ss_conf 871999785999999999999-8699899999999989769998999999999999929948999999999826-99913
Q 000242 1686 LLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPPK 1763 (1801)
Q Consensus 1686 lk~~p~~~~~~~~~~~a~le~-~~g~~e~Ar~lfe~al~~~P~~~diw~~y~~le~k~g~~e~Ar~lferal~~-~~~pk 1763 (1801)
++..|... .++...+.+++ ..|+.++|+.+|++++..+|++.++|..|++++.+.|+.++||.+|++++.. ..+|.
T Consensus 383 l~~~~~~~--~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDARTRH--HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCTTCCT--HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHCCCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 73557750--8999999999988078359999999999878997899999999998679886699999999841579878
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 49999999999999919999999999999999984
Q 000242 1764 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1798 (1801)
Q Consensus 1764 ~~k~lw~~yl~~E~~~Gd~~~~~~v~~rAle~v~~ 1798 (1801)
....+|..|+.||..+|+.+.+..++.||++....
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH
T ss_conf 89999999999999829999999999999987731
No 8
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=190.18 Aligned_cols=250 Identities=14% Similarity=0.115 Sum_probs=173.6
Q ss_pred CCCCHHHHHHHHHC---CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99939999999980---9999999999999999----6279999999999999851771000179999999999999099
Q 000242 1534 APRTPDEFERLVRS---SPNSSFVWIKYMAFML----SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1606 (1801)
Q Consensus 1534 ~~~a~~~fer~l~~---~P~s~~~W~~y~~~~~----~~~e~d~Ar~~~eral~~ip~~ee~e~l~lW~a~l~le~~~g~ 1606 (1801)
....+..|++++.. +|.+..+|..|+.|+. .+++++.+|.+|+||+. +|... .-.+|..|..++...+.
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~---~~~lw~~Y~~fE~~~~~ 139 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGS---LSELWKDFENFELELNK 139 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTT---HHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-CHHHH---HHHHHHHHHHHHHHHCC
T ss_conf 999999999999876888661899999999997360656799999999999982-73546---99999999999987461
Q ss_pred C-----------CHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9-----------98999999999994199--89999999999999189-------0899999999999637989999999
Q 000242 1607 P-----------PEEAVVKVFQRALQYCD--PKKVHLALLGLYERTEQ-------NKLADELLYKMIKKFKHSCKVWLRR 1666 (1801)
Q Consensus 1607 ~-----------~~e~a~~vferAl~~~~--~~~i~~~l~~i~~~~~~-------~~~A~~~~~~~~k~~~~~~~~w~~~ 1666 (1801)
. ....|+.+++.+....+ +..+|..|+.+...... ..++..+|++++..+|..+++|+.|
T Consensus 140 ~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~y 219 (493)
T 2uy1_A 140 ITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFY 219 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 01788999981788999999999998874342999999999986298657621259999999999987289989999999
Q ss_pred HHHHHHH-CHHHHHHHHHHHHHHCCCCCH--------------------------------------HHHHHHHHHHHHH
Q ss_conf 9999972-899999999999871999785--------------------------------------9999999999998
Q 000242 1667 VQRLLKQ-QQEGVQAVVQRALLSLPRHKH--------------------------------------IKFISQTAILEFK 1707 (1801)
Q Consensus 1667 a~~~~~~-~~e~A~~ll~ralk~~p~~~~--------------------------------------~~~~~~~a~le~~ 1707 (1801)
+.++.+. +.++|+.+|+||+.. |.+.. ..+|..|+.++.+
T Consensus 220 a~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 220 SEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99998759989999999998718-99699999987651056899999999986111012232045618999999999987
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 699899999999989769998999999999999929-9489999999998269991349999999999999919999999
Q 000242 1708 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1786 (1801)
Q Consensus 1708 ~g~~e~Ar~lfe~al~~~P~~~diw~~y~~le~k~g-~~e~Ar~lferal~~~~~pk~~k~lw~~yl~~E~~~Gd~~~~~ 1786 (1801)
.++.++||.+|+++ ...+...++|..++.+|...+ +.++||.+|++++. ..|+.+ .+|..|++||...|+.+.++
T Consensus 299 ~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~--~~~~~~-~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL--KHPDST-LLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH-HHHHHHHHHHHHCCCHHHHH
T ss_conf 17889999999986-277888599999999999878996899999999998--789978-99999999998759877799
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000242 1787 YVKQKA 1792 (1801)
Q Consensus 1787 ~v~~rA 1792 (1801)
.+++++
T Consensus 375 ~l~er~ 380 (493)
T 2uy1_A 375 ALFKRL 380 (493)
T ss_dssp HHHHHS
T ss_pred HHHHHH
T ss_conf 999999
No 9
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=186.52 Aligned_cols=211 Identities=16% Similarity=0.216 Sum_probs=120.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999998099999999999999996-------27999-------99999999998-5177100017999999999999
Q 000242 1538 PDEFERLVRSSPNSSFVWIKYMAFMLS-------MADVE-------KARSIAERALQ-TINIREENEKLNIWVAYFNLEN 1602 (1801)
Q Consensus 1538 ~~~fer~l~~~P~s~~~W~~y~~~~~~-------~~e~d-------~Ar~~~eral~-~ip~~ee~e~l~lW~a~l~le~ 1602 (1801)
...|++++..+|+++.+|+.|+.++.+ .|+++ +|+.+|++|++ ..|.. ..+|..|+.++.
T Consensus 258 ~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-----~~l~~~~~~~~~ 332 (530)
T 2ooe_A 258 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-----MLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHH
T ss_conf 999999998578977999999999998354655326512212114999999999999868665-----799999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-H-CHHHH
Q ss_conf 909999899999999999419989--9999999999991890899999999999637989999999999997-2-89999
Q 000242 1603 EYGNPPEEAVVKVFQRALQYCDPK--KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-Q-QQEGV 1678 (1801)
Q Consensus 1603 ~~g~~~~e~a~~vferAl~~~~~~--~i~~~l~~i~~~~~~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~-~-~~e~A 1678 (1801)
..| +.+.|+.+|++|++..|.. .+|..++.++.+.+++++|+.+|+++++..|....+|...+..... . ++++|
T Consensus 333 ~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 333 SRM--KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HTT--CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred HCC--CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 638--899999999998576456830999999999998068899999999997355775089999999999880783599
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999998719997859999999999998699899999999989769998----99999999999992994899999999
Q 000242 1679 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFER 1754 (1801)
Q Consensus 1679 ~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~~P~~----~diw~~y~~le~k~g~~e~Ar~lfer 1754 (1801)
+.+|+++++.+|.+ ..+|..|+.++.+.|+.++||.+|++++...|.. ..+|..|+.+|...|+.+.+..++.|
T Consensus 411 ~~~~e~al~~~p~~--~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 411 FKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999878997--8999999999986798866999999998415798788999999999999982999999999999
Q ss_pred HHH
Q ss_conf 982
Q 000242 1755 AIS 1757 (1801)
Q Consensus 1755 al~ 1757 (1801)
++.
T Consensus 489 ~~~ 491 (530)
T 2ooe_A 489 RFT 491 (530)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
No 10
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=181.57 Aligned_cols=221 Identities=17% Similarity=0.239 Sum_probs=196.0
Q ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 993999999998099999999999999996-------2799-------99999999999851771000179999999999
Q 000242 1535 PRTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADV-------EKARSIAERALQTINIREENEKLNIWVAYFNL 1600 (1801)
Q Consensus 1535 ~~a~~~fer~l~~~P~s~~~W~~y~~~~~~-------~~e~-------d~Ar~~~eral~~ip~~ee~e~l~lW~a~l~l 1600 (1801)
.++...|++++..+|+++.+|+.|+.++.. .+++ ++|+.+|+||++.+++.. ..+|..|+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~----~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----MLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCCC----HHHHHHHHHH
T ss_conf 999999999998768987999999999987353433125400000016999999999999859524----7999998999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCH-H-HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-H-CHH
Q ss_conf 99909999899999999999419989-9-999999999991890899999999999637989999999999997-2-899
Q 000242 1601 ENEYGNPPEEAVVKVFQRALQYCDPK-K-VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-Q-QQE 1676 (1801)
Q Consensus 1601 e~~~g~~~~e~a~~vferAl~~~~~~-~-i~~~l~~i~~~~~~~~~A~~~~~~~~k~~~~~~~~w~~~a~~~~~-~-~~e 1676 (1801)
+...| +.+.|+.+|++|++..|.. . +|..++.++.+.+++++|+..|+++++..|....+|..++.+... . +++
T Consensus 109 ~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 109 EESRM--KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHTT--CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHHCC--CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH
T ss_conf 88558--9999999999998153667358999999999984488999999999985689887999999999998759979
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999999871999785999999999999869989999999998976---99-98999999999999929948999999
Q 000242 1677 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE---YP-KRTDLWSIYLDQEIRLGDVDLIRGLF 1752 (1801)
Q Consensus 1677 ~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~lfe~al~~---~P-~~~diw~~y~~le~k~g~~e~Ar~lf 1752 (1801)
+|+.+|+++++.+|.+ ..+|..++.++.+.|+.++|+.+|++++.. .| +...+|..|+.++.+.|+.+.|+.++
T Consensus 187 ~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999998767882--99999999999988998999999999974568998999999999999999849989999999
Q ss_pred HHHHHCCCCCHHH
Q ss_conf 9998269991349
Q 000242 1753 ERAISLSLPPKKM 1765 (1801)
Q Consensus 1753 eral~~~~~pk~~ 1765 (1801)
++++. ..|+..
T Consensus 265 ~~a~~--~~p~~~ 275 (308)
T 2ond_A 265 KRRFT--AFREEY 275 (308)
T ss_dssp HHHHH--HTTTTT
T ss_pred HHHHH--HCCCCC
T ss_conf 99998--765302
Done!