Query 000243
Match_columns 1800
No_of_seqs 449 out of 1558
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 01:01:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0163 Myosin class VI heavy 98.9 1.2E-08 2.6E-13 124.7 12.7 29 838-866 1166-1194(1259)
2 PF07001 BAT2_N: BAT2 N-termin 98.6 1.9E-07 4.1E-12 102.0 10.7 69 8-102 16-84 (189)
3 KOG1029 Endocytic adaptor prot 98.4 5.8E-06 1.3E-10 102.5 16.7 28 562-589 313-343 (1118)
4 PTZ00121 MAEBL; Provisional 98.4 1.2E-05 2.5E-10 104.5 18.9 38 447-485 978-1015(2084)
5 PTZ00121 MAEBL; Provisional 98.3 1.8E-05 3.9E-10 102.9 17.7 24 404-429 881-904 (2084)
6 KOG1029 Endocytic adaptor prot 98.2 4.8E-05 1E-09 94.8 18.5 17 74-91 87-103 (1118)
7 KOG4364 Chromatin assembly fac 98.1 0.00023 4.9E-09 88.2 21.8 44 809-854 492-537 (811)
8 PTZ00266 NIMA-related protein 97.8 0.00023 4.9E-09 93.6 15.8 23 934-956 782-804 (1021)
9 PRK09510 tolA cell envelope in 97.7 0.0017 3.7E-08 78.2 19.5 10 881-890 360-369 (387)
10 PTZ00266 NIMA-related protein 97.6 0.00057 1.2E-08 90.0 15.4 15 52-66 25-39 (1021)
11 KOG2891 Surface glycoprotein [ 97.6 0.0027 5.8E-08 72.9 17.1 13 531-543 211-223 (445)
12 KOG4364 Chromatin assembly fac 97.5 0.0022 4.7E-08 80.0 16.6 23 1271-1293 749-771 (811)
13 COG3064 TolA Membrane protein 97.2 0.0097 2.1E-07 69.6 16.4 19 819-837 326-344 (387)
14 KOG0163 Myosin class VI heavy 97.2 0.0066 1.4E-07 76.5 15.9 43 850-895 1214-1256(1259)
15 PRK09510 tolA cell envelope in 97.1 0.029 6.2E-07 68.1 19.8 18 904-921 351-368 (387)
16 KOG2072 Translation initiation 97.0 0.083 1.8E-06 68.0 22.8 15 761-775 896-910 (988)
17 TIGR02794 tolA_full TolA prote 96.9 0.039 8.5E-07 66.1 18.9 6 885-890 324-329 (346)
18 KOG4661 Hsp27-ERE-TATA-binding 96.9 0.039 8.4E-07 68.2 18.7 21 235-256 255-275 (940)
19 PF05262 Borrelia_P83: Borreli 96.9 0.024 5.2E-07 70.4 16.7 11 879-889 479-489 (489)
20 COG3064 TolA Membrane protein 96.8 0.074 1.6E-06 62.6 18.9 7 824-830 323-329 (387)
21 KOG2891 Surface glycoprotein [ 96.6 0.11 2.4E-06 60.3 18.5 8 388-395 157-164 (445)
22 KOG4661 Hsp27-ERE-TATA-binding 96.4 0.026 5.7E-07 69.6 12.1 18 322-339 355-372 (940)
23 KOG1144 Translation initiation 96.2 0.031 6.8E-07 71.3 11.7 11 1355-1365 939-949 (1064)
24 KOG1144 Translation initiation 96.0 0.028 6E-07 71.7 9.8 6 1132-1137 730-735 (1064)
25 KOG2412 Nuclear-export-signal 95.3 0.6 1.3E-05 58.6 17.6 36 806-841 420-455 (591)
26 KOG4817 Unnamed protein [Funct 95.1 0.45 9.8E-06 57.3 15.3 65 8-96 15-79 (468)
27 KOG2412 Nuclear-export-signal 95.1 0.75 1.6E-05 57.8 17.6 15 817-831 409-423 (591)
28 KOG2072 Translation initiation 95.0 2.8 6E-05 55.0 22.6 8 770-777 923-930 (988)
29 KOG0742 AAA+-type ATPase [Post 95.0 1.2 2.7E-05 54.9 18.6 12 721-732 252-263 (630)
30 KOG2002 TPR-containing nuclear 94.2 0.23 4.9E-06 65.4 10.8 11 549-559 758-768 (1018)
31 PF09726 Macoilin: Transmembra 94.1 0.84 1.8E-05 59.5 15.6 9 188-196 196-204 (697)
32 PF13904 DUF4207: Domain of un 93.7 2 4.3E-05 50.1 16.2 9 547-555 89-97 (264)
33 KOG0742 AAA+-type ATPase [Post 92.2 4.5 9.7E-05 50.3 16.6 7 537-543 70-76 (630)
34 PRK00106 hypothetical protein; 92.0 8.1 0.00018 49.5 19.3 8 725-732 204-211 (535)
35 PF09726 Macoilin: Transmembra 91.8 3.5 7.5E-05 54.1 16.3 7 547-553 423-429 (697)
36 PF12037 DUF3523: Domain of un 91.5 15 0.00032 43.8 19.3 9 508-516 26-34 (276)
37 KOG3654 Uncharacterized CH dom 87.7 3 6.6E-05 52.1 10.4 17 75-91 17-33 (708)
38 PRK00409 recombination and DNA 86.8 15 0.00034 48.9 16.9 12 277-288 222-233 (782)
39 PF07946 DUF1682: Protein of u 86.6 2.5 5.5E-05 50.4 8.9 7 339-345 67-73 (321)
40 PRK12705 hypothetical protein; 84.4 63 0.0014 41.7 19.7 12 548-559 22-33 (508)
41 COG4942 Membrane-bound metallo 84.2 45 0.00097 42.0 17.8 10 785-794 356-365 (420)
42 PF02029 Caldesmon: Caldesmon; 84.0 4 8.7E-05 51.6 9.3 10 876-885 460-469 (492)
43 PF12128 DUF3584: Protein of u 82.1 44 0.00095 46.7 18.6 21 1220-1240 1159-1179(1201)
44 TIGR01069 mutS2 MutS2 family p 81.5 44 0.00095 44.8 17.6 13 277-289 217-229 (771)
45 PF09731 Mitofilin: Mitochondr 80.8 1E+02 0.0022 39.6 20.0 15 319-333 27-41 (582)
46 PLN03086 PRLI-interacting fact 80.3 9.9 0.00021 49.0 10.8 9 1006-1014 325-333 (567)
47 PRK11637 AmiB activator; Provi 79.6 76 0.0016 39.4 17.8 7 850-856 386-392 (428)
48 KOG0579 Ste20-like serine/thre 78.6 33 0.00071 45.1 14.2 13 182-194 472-484 (1187)
49 KOG1103 Predicted coiled-coil 78.2 18 0.00038 44.1 11.3 54 958-1025 449-502 (561)
50 PLN02316 synthase/transferase 77.6 41 0.00088 46.5 15.7 11 379-389 140-150 (1036)
51 KOG0980 Actin-binding protein 77.6 2.5E+02 0.0054 38.6 21.7 9 525-533 311-319 (980)
52 KOG2689 Predicted ubiquitin re 76.2 23 0.0005 42.3 11.3 15 798-812 249-263 (290)
53 KOG3654 Uncharacterized CH dom 74.9 21 0.00045 45.3 10.9 14 205-218 119-132 (708)
54 PLN02316 synthase/transferase 73.0 56 0.0012 45.3 15.2 9 267-275 120-128 (1036)
55 KOG1103 Predicted coiled-coil 72.7 1.9E+02 0.004 36.0 17.6 14 1217-1230 510-523 (561)
56 PTZ00491 major vault protein; 72.5 1.1E+02 0.0023 41.7 17.0 11 150-160 198-208 (850)
57 PRK13428 F0F1 ATP synthase sub 72.1 1.9E+02 0.0041 36.7 18.5 25 825-849 242-266 (445)
58 KOG1265 Phospholipase C [Lipid 71.6 90 0.002 42.5 15.8 15 318-333 752-767 (1189)
59 KOG4722 Zn-finger protein [Gen 71.5 1.3E+02 0.0028 38.0 16.2 14 189-202 82-95 (672)
60 KOG0579 Ste20-like serine/thre 71.0 1.3E+02 0.0027 40.2 16.5 11 710-720 965-975 (1187)
61 PF06098 Radial_spoke_3: Radia 69.8 43 0.00094 40.4 11.8 12 336-347 3-14 (291)
62 PF06637 PV-1: PV-1 protein (P 69.5 1.6E+02 0.0035 37.0 16.3 12 721-732 417-428 (442)
63 KOG0994 Extracellular matrix g 69.2 1.3E+02 0.0028 42.0 16.6 64 162-232 1193-1261(1758)
64 KOG2507 Ubiquitin regulatory p 68.7 12 0.00026 46.7 7.1 12 907-918 464-475 (506)
65 KOG0994 Extracellular matrix g 68.5 1E+02 0.0022 42.9 15.5 11 547-557 1516-1526(1758)
66 KOG0161 Myosin class II heavy 67.8 1.9E+02 0.0041 42.9 18.8 9 185-193 302-310 (1930)
67 KOG2689 Predicted ubiquitin re 65.4 57 0.0012 39.2 11.4 13 809-821 249-261 (290)
68 KOG1265 Phospholipase C [Lipid 65.2 1.7E+02 0.0038 40.0 16.4 11 421-431 824-834 (1189)
69 KOG0161 Myosin class II heavy 64.9 2.4E+02 0.0051 41.9 18.9 11 253-263 454-464 (1930)
70 KOG0921 Dosage compensation co 63.2 13 0.00027 50.1 6.2 25 36-60 1204-1232(1282)
71 KOG0288 WD40 repeat protein Ti 62.4 3.1E+02 0.0068 35.0 17.0 19 994-1012 380-398 (459)
72 KOG1363 Predicted regulator of 61.3 50 0.0011 42.1 10.6 10 291-300 63-72 (460)
73 KOG1363 Predicted regulator of 61.0 34 0.00074 43.4 9.2 8 503-510 216-223 (460)
74 KOG2507 Ubiquitin regulatory p 60.8 12 0.00026 46.7 5.1 8 785-792 345-352 (506)
75 PRK04863 mukB cell division pr 60.0 3.8E+02 0.0082 39.1 19.6 17 1200-1216 1033-1049(1486)
76 PF10168 Nup88: Nuclear pore c 59.1 1.3E+02 0.0027 40.5 14.1 15 81-95 83-97 (717)
77 KOG4722 Zn-finger protein [Gen 59.0 4.3E+02 0.0094 33.7 17.3 7 551-557 281-287 (672)
78 PF15359 CDV3: Carnitine defic 53.6 33 0.00072 37.0 6.4 63 116-193 59-123 (129)
79 PTZ00491 major vault protein; 52.5 3E+02 0.0066 37.8 15.8 8 347-354 389-396 (850)
80 PF04094 DUF390: Protein of un 51.2 6.4E+02 0.014 34.4 17.8 29 723-753 671-699 (828)
81 KOG0976 Rho/Rac1-interacting s 50.9 6E+02 0.013 35.0 17.4 13 1534-1546 1197-1209(1265)
82 KOG0982 Centrosomal protein Nu 50.9 6.7E+02 0.014 32.4 18.6 9 549-557 225-233 (502)
83 KOG0933 Structural maintenance 49.9 8.1E+02 0.017 34.7 18.8 21 537-557 662-682 (1174)
84 KOG0681 Actin-related protein 48.7 1.1E+02 0.0023 40.0 10.6 16 469-484 199-214 (645)
85 TIGR02680 conserved hypothetic 48.3 5.6E+02 0.012 37.0 18.4 11 1496-1506 1246-1256(1353)
86 KOG2441 mRNA splicing factor/p 48.0 34 0.00074 42.5 6.1 7 448-454 190-196 (506)
87 COG2433 Uncharacterized conser 46.8 5.5E+02 0.012 34.4 16.2 12 539-550 343-354 (652)
88 KOG3973 Uncharacterized conser 46.4 33 0.00072 42.0 5.6 29 71-99 310-338 (465)
89 PRK04863 mukB cell division pr 46.2 9.8E+02 0.021 35.3 20.1 10 867-876 759-768 (1486)
90 KOG0681 Actin-related protein 46.0 1.7E+02 0.0036 38.4 11.6 6 469-474 149-154 (645)
91 KOG3859 Septins (P-loop GTPase 44.7 3.8E+02 0.0081 33.1 13.5 11 421-431 120-130 (406)
92 PF05667 DUF812: Protein of un 44.1 7.1E+02 0.015 33.2 17.1 10 187-196 47-56 (594)
93 PF06936 Selenoprotein_S: Sele 43.3 1.4E+02 0.0031 34.2 9.7 6 524-529 17-22 (190)
94 PRK12472 hypothetical protein; 42.8 4.1E+02 0.0089 34.6 14.2 10 469-478 122-131 (508)
95 TIGR02169 SMC_prok_A chromosom 41.8 1.1E+03 0.024 32.5 19.1 9 779-787 573-581 (1164)
96 COG4499 Predicted membrane pro 41.5 73 0.0016 39.9 7.5 20 545-564 344-363 (434)
97 PLN03188 kinesin-12 family pro 39.9 1.1E+03 0.024 34.3 18.3 12 70-81 65-76 (1320)
98 KOG3756 Pinin (desmosome-assoc 39.5 8.6E+02 0.019 30.4 17.6 14 376-389 53-66 (340)
99 PRK12472 hypothetical protein; 39.1 6.5E+02 0.014 33.0 15.0 7 909-915 481-487 (508)
100 KOG0996 Structural maintenance 38.3 7.2E+02 0.016 35.6 16.1 11 853-863 666-676 (1293)
101 KOG3973 Uncharacterized conser 36.2 25 0.00054 43.0 2.6 19 36-54 441-459 (465)
102 KOG3915 Transcription regulato 35.0 3E+02 0.0064 35.5 11.1 20 36-55 71-90 (641)
103 KOG3915 Transcription regulato 34.7 2.7E+02 0.0059 35.8 10.8 8 177-184 178-185 (641)
104 KOG0996 Structural maintenance 34.1 1.5E+03 0.033 32.7 18.1 6 786-791 608-613 (1293)
105 PRK02292 V-type ATP synthase s 34.0 7E+02 0.015 27.8 13.1 85 565-649 8-92 (188)
106 KOG2668 Flotillins [Intracellu 33.2 1E+03 0.022 30.2 14.9 13 488-500 130-142 (428)
107 KOG0612 Rho-associated, coiled 28.4 2.1E+03 0.045 31.6 18.0 12 721-732 760-771 (1317)
108 KOG0976 Rho/Rac1-interacting s 28.3 1.8E+03 0.04 30.9 17.3 22 1270-1296 972-993 (1265)
109 COG5269 ZUO1 Ribosome-associat 27.3 8E+02 0.017 30.1 12.4 12 721-732 338-349 (379)
110 KOG2894 Uncharacterized conser 27.1 3.6E+02 0.0077 33.0 9.6 125 544-668 11-186 (331)
111 KOG0345 ATP-dependent RNA heli 27.1 2.6E+02 0.0057 36.3 9.0 10 376-385 352-361 (567)
112 COG5269 ZUO1 Ribosome-associat 26.9 5.9E+02 0.013 31.2 11.3 7 274-280 19-25 (379)
113 KOG0249 LAR-interacting protei 26.8 1.4E+03 0.031 31.4 15.5 13 912-924 440-452 (916)
114 KOG4572 Predicted DNA-binding 26.5 1.4E+03 0.03 31.8 15.3 15 69-84 229-243 (1424)
115 KOG0612 Rho-associated, coiled 26.3 1.8E+03 0.039 32.2 16.9 26 423-448 308-333 (1317)
116 PF06658 DUF1168: Protein of u 26.1 5.1E+02 0.011 28.9 10.0 15 529-543 23-38 (142)
117 KOG2129 Uncharacterized conser 24.9 1.6E+03 0.035 29.1 18.5 13 475-487 40-52 (552)
118 KOG2505 Ankyrin repeat protein 23.6 3.4E+02 0.0073 35.5 9.1 9 347-355 254-262 (591)
119 KOG2441 mRNA splicing factor/p 23.1 3.9E+02 0.0084 34.0 9.2 9 471-479 170-178 (506)
120 PF08317 Spc7: Spc7 kinetochor 21.4 1.5E+03 0.033 27.6 16.0 157 527-691 104-265 (325)
121 COG1579 Zn-ribbon protein, pos 21.2 1.5E+03 0.032 27.3 16.7 142 568-709 25-166 (239)
122 KOG2751 Beclin-like protein [S 21.1 1.9E+03 0.041 28.6 14.6 13 531-543 124-136 (447)
123 PF07415 Herpes_LMP2: Gammaher 20.6 34 0.00074 42.0 0.1 42 92-133 13-54 (489)
124 KOG0288 WD40 repeat protein Ti 20.5 2E+03 0.042 28.4 17.7 13 772-784 187-199 (459)
125 TIGR01144 ATP_synt_b ATP synth 20.3 1.1E+03 0.023 25.2 16.1 96 589-684 24-119 (147)
126 PRK09173 F0F1 ATP synthase sub 20.3 1.1E+03 0.025 25.6 16.0 96 589-684 31-126 (159)
No 1
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=98.87 E-value=1.2e-08 Score=124.67 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.3
Q ss_pred cccCCcccccCCCCccccccccccccccc
Q 000243 838 VSRGQRWNMSGDGDHYGRNIEMESDFHEN 866 (1800)
Q Consensus 838 ~~r~qRWnAp~DGd~~gRq~eIdSdq~EN 866 (1800)
-.+...|.+||||.||.||+++|++.+.-
T Consensus 1166 ~~k~gmWyaHFdGq~I~RQm~l~~~kpP~ 1194 (1259)
T KOG0163|consen 1166 NTKRGMWYAHFDGQWIARQMELHPDKPPI 1194 (1259)
T ss_pred CCccceEEEecCcHHHHhhheecCCCCCe
Confidence 46788999999999999999999887654
No 2
>PF07001 BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This entry represents the N terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin [].
Probab=98.60 E-value=1.9e-07 Score=102.01 Aligned_cols=69 Identities=35% Similarity=0.485 Sum_probs=47.9
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeecCCccccccCCccccCCCCCCCcccccc
Q 000243 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (1800)
Q Consensus 8 ~k~~svnln~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (1800)
.||.++|||..|--.+.--+ -....-..||.+|++= +.. =-||||.||||||.||
T Consensus 16 ~Ky~~l~in~~YkGks~e~q------------------k~~~~~~hGmqsLGKv------~~a-RRmPpPaNLPSLKaEn 70 (189)
T PF07001_consen 16 PKYSSLNINSLYKGKSLEPQ------------------KSTVPRRHGMQSLGKV------PSA-RRMPPPANLPSLKAEN 70 (189)
T ss_pred ccceeechhhhhcCCccccc------------------cCCccCCCcceecccc------ccc-ccCCCCCCCcchhhhc
Confidence 38999999999933332210 1122237799999982 111 1289999999999999
Q ss_pred cccCCCCCCCCCCCC
Q 000243 88 ERFDSSGSNGGPAGG 102 (1800)
Q Consensus 88 ~~~d~~~~~~~~~~~ 102 (1800)
.++|++-.. +|.+|
T Consensus 71 ~GnDpnv~l-VP~~G 84 (189)
T PF07001_consen 71 KGNDPNVSL-VPKGG 84 (189)
T ss_pred cCCCCCcee-ecCCC
Confidence 999977776 66543
No 3
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=5.8e-06 Score=102.50 Aligned_cols=28 Identities=43% Similarity=0.662 Sum_probs=14.1
Q ss_pred cccCchhhHHH---HHHHHHHHHHHHHHHHH
Q 000243 562 DFHDPVRESFE---AELERVQKMQEQERQRI 589 (1800)
Q Consensus 562 E~edqeREElE---aELErkrreeEEERrRk 589 (1800)
.|+++.++.++ +|++++++..+++.+|+
T Consensus 313 TFEDKrkeNy~kGqaELerRRq~leeqqqre 343 (1118)
T KOG1029|consen 313 TFEDKRKENYEKGQAELERRRQALEEQQQRE 343 (1118)
T ss_pred chhhhhHHhHhhhhHHHHHHHHHHHHHHHHH
Confidence 34455454444 46666655555444433
No 4
>PTZ00121 MAEBL; Provisional
Probab=98.35 E-value=1.2e-05 Score=104.49 Aligned_cols=38 Identities=13% Similarity=-0.149 Sum_probs=16.9
Q ss_pred CCCCcccccccccccccCCCCcccCcccccccccccccc
Q 000243 447 RQPWNNSVHSFNSQRAERNPWEQYGSEQYNRFRGDAFQR 485 (1800)
Q Consensus 447 gQpwn~~msS~s~R~~Ert~p~~ygi~qynr~rgdsfQn 485 (1800)
+.-|.|++.--++=-.-.+.| --=|+--|+|--.+++-
T Consensus 978 ~~N~~N~~~~~GkCyi~~~KP-TCvI~k~N~fsfTALss 1015 (2084)
T PTZ00121 978 PVNDNNIEIANGECYHILQKP-TCVIDKENHFSFTALTA 1015 (2084)
T ss_pred CccchhhhhhcCeeEEEecCc-cceecCcchhhhhhccc
Confidence 444555555555444444555 22233334344444443
No 5
>PTZ00121 MAEBL; Provisional
Probab=98.27 E-value=1.8e-05 Score=102.88 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=12.9
Q ss_pred CcccCCCccccccccccccccCcccc
Q 000243 404 GICERPSSLNREANKETKFMSSPFRD 429 (1800)
Q Consensus 404 Gig~Rp~S~~R~a~ke~kYv~s~~r~ 429 (1800)
..|.+| .+-.+.++=-|++|-.|.
T Consensus 881 p~Cf~p--~Kt~~~KnwtYvSSfiRP 904 (2084)
T PTZ00121 881 PNCQII--RKTLDSKDWTYVSSFIRP 904 (2084)
T ss_pred Cccccc--ccccccccceeeccccCC
Confidence 445555 444455555666665554
No 6
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=4.8e-05 Score=94.77 Aligned_cols=17 Identities=47% Similarity=0.677 Sum_probs=9.8
Q ss_pred cCCCCCCCcccccccccC
Q 000243 74 VPPPLNLPSLRKEHERFD 91 (1800)
Q Consensus 74 vp~plnlpslrkeh~~~d 91 (1800)
||+-|- |||-|---+|-
T Consensus 87 lP~~LP-Psll~~~~~~~ 103 (1118)
T KOG1029|consen 87 LPPVLP-PSLLKQPPRNA 103 (1118)
T ss_pred CCCCCC-hHHhccCCcCC
Confidence 444433 66777766665
No 7
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.11 E-value=0.00023 Score=88.23 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=31.3
Q ss_pred cccCCCCCCcccccccccCCCCc--chhhhccccCCcccccCCCCccc
Q 000243 809 KEFYGGPGIMSSRNYYKAGILEP--HMDEFTVSRGQRWNMSGDGDHYG 854 (1800)
Q Consensus 809 lefyggaGFvKKrPY~kGgtTD~--~~DDYr~~r~qRWnAp~DGd~~g 854 (1800)
-.|||.+. ||...++++.+-. .+.||.++.+.-|-..--|.-+.
T Consensus 492 P~YyGTWr--KKS~~VsarrPlAq~~llDYEVdSDeEWEEEepGESlS 537 (811)
T KOG4364|consen 492 PGYYGTWR--KKSQVVSARRPLAQDPLLDYEVDSDEEWEEEEPGESLS 537 (811)
T ss_pred Cccccccc--ccccccccCCcccccccccccccCcccccccCCCcccc
Confidence 45777766 5555566665544 67799999999998877776443
No 8
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=97.82 E-value=0.00023 Score=93.57 Aligned_cols=23 Identities=30% Similarity=0.141 Sum_probs=12.8
Q ss_pred CCCCCCCCccccccccccccccc
Q 000243 934 ENECPSPSTFQENEVEYNRLLRS 956 (1800)
Q Consensus 934 ~~~~~~~s~f~~~~~~~~~~~r~ 956 (1800)
++--|+-++=+--|..|+|..|.
T Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~ 804 (1021)
T PTZ00266 782 EAVNPICSAEAHYERVYNHGNRG 804 (1021)
T ss_pred hhccchhccCCchhccccCCccc
Confidence 44445555545556666666555
No 9
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=97.71 E-value=0.0017 Score=78.15 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=5.1
Q ss_pred CCCCCCCCCC
Q 000243 881 YRGNVHPPYP 890 (1800)
Q Consensus 881 S~~rPfPP~p 890 (1800)
-+..+||++|
T Consensus 360 ar~a~lP~pP 369 (387)
T PRK09510 360 AKTAKIPKPP 369 (387)
T ss_pred HHcCCCCCCC
Confidence 3445555554
No 10
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=97.65 E-value=0.00057 Score=90.00 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=9.1
Q ss_pred CCceEEeecCCcccc
Q 000243 52 GGGMLVLSRPRSSQK 66 (1800)
Q Consensus 52 ~ggm~vlsr~r~~~~ 66 (1800)
+=|.|.|.+.+.+..
T Consensus 25 gFGtVYLAkdk~tg~ 39 (1021)
T PTZ00266 25 RFGEVFLVKHKRTQE 39 (1021)
T ss_pred CCeEEEEEEECCCCe
Confidence 445677777665543
No 11
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.55 E-value=0.0027 Score=72.90 Aligned_cols=13 Identities=31% Similarity=0.439 Sum_probs=11.6
Q ss_pred cCCCCCCCCCCcc
Q 000243 531 DFGSSSFDGRDPF 543 (1800)
Q Consensus 531 DFgSSsfDgrdpF 543 (1800)
.|.+++|+++.+|
T Consensus 211 q~~gfg~g~dlff 223 (445)
T KOG2891|consen 211 QFHGFGFGGDLFF 223 (445)
T ss_pred eeeccccCcchhH
Confidence 5889999999988
No 12
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.50 E-value=0.0022 Score=80.00 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=16.4
Q ss_pred CCCccceEEeeecccCCCCCCCC
Q 000243 1271 SQAETPVKLQFGLFSGPSLIPSP 1293 (1800)
Q Consensus 1271 ~~~e~pv~lqfglfsgpslipsp 1293 (1800)
-+.-+||+-|+-.-.||+--|-|
T Consensus 749 q~~~lqv~~qw~y~l~~~~sp~~ 771 (811)
T KOG4364|consen 749 QDSRLQVKKQWLYKLGLSPSPDK 771 (811)
T ss_pred ccccccccceeeeeecCCCCCCC
Confidence 45778888888888777654443
No 13
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.0097 Score=69.64 Aligned_cols=19 Identities=0% Similarity=-0.150 Sum_probs=7.7
Q ss_pred ccccccccCCCCcchhhhc
Q 000243 819 SSRNYYKAGILEPHMDEFT 837 (1800)
Q Consensus 819 KKrPY~kGgtTD~~~DDYr 837 (1800)
|.|-...--++|.++.+|.
T Consensus 326 K~C~l~ikL~pdGtl~~~~ 344 (387)
T COG3064 326 KTCRLRIKLAPDGTLLDIK 344 (387)
T ss_pred ceeEEEEEEcCCcceeecc
Confidence 3343333333444444444
No 14
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.19 E-value=0.0066 Score=76.51 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=31.1
Q ss_pred CCccccccccccccccccccccCCcccccCCCCCCCCCCCCCccCC
Q 000243 850 GDHYGRNIEMESDFHENITERYGDVGWGQGRYRGNVHPPYPDRIYP 895 (1800)
Q Consensus 850 Gd~~gRq~eIdSdq~ENigerfGd~gW~~~sS~~rPfPP~peRmyq 895 (1800)
|..-.|..+|.+..++..|+|+|+..+.+ . +-.-|.+|..|.|
T Consensus 1214 gL~rKrGAEI~~~eFe~~W~r~Ggk~~~~-~--~~a~p~~~~a~~q 1256 (1259)
T KOG0163|consen 1214 GLTRKRGAEILEHEFEREWERNGGKAYKN-L--GAAKPNGPAAAMQ 1256 (1259)
T ss_pred ccccccccccChHHHHHHHHHhCcHHhHh-h--cccCCCchHHHHh
Confidence 44567889999999999999999988877 2 2244455555544
No 15
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=97.11 E-value=0.029 Score=68.06 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=7.3
Q ss_pred cccccccccCCCCCCCCC
Q 000243 904 SFGRSRYSMRHPRVLPPP 921 (1800)
Q Consensus 904 ~~~r~ry~~rqprvlppp 921 (1800)
.|-|.=.....-.+||+|
T Consensus 351 aldrAA~~Aar~a~lP~p 368 (387)
T PRK09510 351 ALCQAALAAAKTAKIPKP 368 (387)
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 344433333333444544
No 16
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.083 Score=68.02 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=11.3
Q ss_pred ccCCCCCCCCCcccc
Q 000243 761 LDRGKPFNSWRRDAF 775 (1800)
Q Consensus 761 ldR~Kp~nSWrRd~~ 775 (1800)
..|..+.+.|||...
T Consensus 896 s~~a~~~~~WrR~a~ 910 (988)
T KOG2072|consen 896 SPRAPEEAEWRRGAG 910 (988)
T ss_pred CCCCCcchHHhhccC
Confidence 356678899999873
No 17
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=96.95 E-value=0.039 Score=66.08 Aligned_cols=6 Identities=33% Similarity=0.340 Sum_probs=2.8
Q ss_pred CCCCCC
Q 000243 885 VHPPYP 890 (1800)
Q Consensus 885 PfPP~p 890 (1800)
|||++|
T Consensus 324 p~P~Pp 329 (346)
T TIGR02794 324 KLPMPP 329 (346)
T ss_pred CCCCCC
Confidence 555443
No 18
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.93 E-value=0.039 Score=68.25 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=13.8
Q ss_pred CCCcccccCCCcccCCccccCC
Q 000243 235 DGMSPRLQSGQDVVGSRLRENG 256 (1800)
Q Consensus 235 ~~m~pq~~~~~~~~g~~~~~~~ 256 (1800)
--..|-+.+-+.+.|.+ ++++
T Consensus 255 aeeedlfdSahpeegDl-Dlas 275 (940)
T KOG4661|consen 255 AEEEDLFDSAHPEEGDL-DLAS 275 (940)
T ss_pred hhccccccccCCccccc-cccc
Confidence 34566677778888876 5544
No 19
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=96.87 E-value=0.024 Score=70.39 Aligned_cols=11 Identities=0% Similarity=-0.073 Sum_probs=5.4
Q ss_pred CCCCCCCCCCC
Q 000243 879 GRYRGNVHPPY 889 (1800)
Q Consensus 879 ~sS~~rPfPP~ 889 (1800)
|.-...||.||
T Consensus 479 S~~eV~P~T~~ 489 (489)
T PF05262_consen 479 SEVEVLPFTSF 489 (489)
T ss_pred CccccCCCCCC
Confidence 44444555543
No 20
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=96.81 E-value=0.074 Score=62.65 Aligned_cols=7 Identities=0% Similarity=0.116 Sum_probs=3.0
Q ss_pred cccCCCC
Q 000243 824 YKAGILE 830 (1800)
Q Consensus 824 ~kGgtTD 830 (1800)
|.|.+|.
T Consensus 323 f~gK~C~ 329 (387)
T COG3064 323 FAGKTCR 329 (387)
T ss_pred cCCceeE
Confidence 3444444
No 21
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=96.64 E-value=0.11 Score=60.33 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=4.0
Q ss_pred cccCCccc
Q 000243 388 LQKDGFGA 395 (1800)
Q Consensus 388 l~k~w~~a 395 (1800)
|+-.||.-
T Consensus 157 ip~kwf~l 164 (445)
T KOG2891|consen 157 IPCKWFAL 164 (445)
T ss_pred Ccceeeee
Confidence 44456643
No 22
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.37 E-value=0.026 Score=69.65 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCCCCc
Q 000243 322 GDFDMPRPSVLPHKPAHN 339 (1800)
Q Consensus 322 ~~fd~~~~~~~p~k~~~~ 339 (1800)
+-|||---.-||+-|.-+
T Consensus 355 rKfdfdAcnevpPapkeS 372 (940)
T KOG4661|consen 355 RKFDFDACNEVPPAPKES 372 (940)
T ss_pred ccccccccccCCCCCccc
Confidence 357777666677665544
No 23
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.031 Score=71.26 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=5.6
Q ss_pred CCCCccccccC
Q 000243 1355 NVPANFSLNQN 1365 (1800)
Q Consensus 1355 ~~~~~~~~nqn 1365 (1800)
.+.+||-||.-
T Consensus 939 ~ilpn~ifN~R 949 (1064)
T KOG1144|consen 939 QILPNCIFNKR 949 (1064)
T ss_pred hhhhHhhccCC
Confidence 34455666643
No 24
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.028 Score=71.72 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=3.0
Q ss_pred cceeee
Q 000243 1132 SNLVLG 1137 (1800)
Q Consensus 1132 ~~~vlg 1137 (1800)
|-+|||
T Consensus 730 D~Ivvc 735 (1064)
T KOG1144|consen 730 DQIVVC 735 (1064)
T ss_pred CEEEEc
Confidence 455554
No 25
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=95.33 E-value=0.6 Score=58.61 Aligned_cols=36 Identities=8% Similarity=-0.017 Sum_probs=30.9
Q ss_pred CCccccCCCCCCcccccccccCCCCcchhhhccccC
Q 000243 806 VPRKEFYGGPGIMSSRNYYKAGILEPHMDEFTVSRG 841 (1800)
Q Consensus 806 fprlefyggaGFvKKrPY~kGgtTD~~~DDYr~~r~ 841 (1800)
||++--...+.+.|+|||..+..++...++|.++-+
T Consensus 420 ~Pdv~dlllA~l~KkCP~~VPf~~~~~~Eq~~k~mG 455 (591)
T KOG2412|consen 420 FPDVGDLLLARLHKKCPYVVPFHIVNSTEQYQKMMG 455 (591)
T ss_pred CchHHHHHHHHHHhcCCccccccccCcHHHHHHhhc
Confidence 777777778889999999999999999999986543
No 26
>KOG4817 consensus Unnamed protein [Function unknown]
Probab=95.15 E-value=0.45 Score=57.27 Aligned_cols=65 Identities=32% Similarity=0.436 Sum_probs=42.4
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeecCCccccccCCccccCCCCCCCcccccc
Q 000243 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (1800)
Q Consensus 8 ~k~~svnln~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (1800)
.||--|-||..|--.-.- .+- ..-..-+-||-.|.+ | ..---.|||-||||||-|-
T Consensus 15 ~K~talsin~~ykg~~~~-----------~aq------R~~vp~RhGmQslGK------a-~v~rrmpPPAnLPSLkaEn 70 (468)
T KOG4817|consen 15 PKFTALSINRMYKGSREP-----------SAQ------RNQVPRRHGMQSLGK------A-KVPRRMPPPANLPSLKAEN 70 (468)
T ss_pred cCcceeehhhhhcCCcCC-----------ccc------ccCCCccchhhhhcc------c-cccccCCCCCCCcchhhcc
Confidence 589888888888433100 000 122233678877764 1 2223579999999999999
Q ss_pred cccCCCCCC
Q 000243 88 ERFDSSGSN 96 (1800)
Q Consensus 88 ~~~d~~~~~ 96 (1800)
-+.|++-..
T Consensus 71 ~g~dpn~~l 79 (468)
T KOG4817|consen 71 HGSDPNNLL 79 (468)
T ss_pred cCCCCCcee
Confidence 999987543
No 27
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=95.12 E-value=0.75 Score=57.79 Aligned_cols=15 Identities=7% Similarity=-0.017 Sum_probs=9.4
Q ss_pred CcccccccccCCCCc
Q 000243 817 IMSSRNYYKAGILEP 831 (1800)
Q Consensus 817 FvKKrPY~kGgtTD~ 831 (1800)
|.+.+-|.--.++|-
T Consensus 409 la~V~l~i~~q~Pdv 423 (591)
T KOG2412|consen 409 LAKVILYIWSQFPDV 423 (591)
T ss_pred HHHHHHHHHHhCchH
Confidence 347777776666654
No 28
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=95.04 E-value=2.8 Score=55.04 Aligned_cols=8 Identities=25% Similarity=0.630 Sum_probs=4.2
Q ss_pred CCcccccC
Q 000243 770 WRRDAFES 777 (1800)
Q Consensus 770 WrRd~~lr 777 (1800)
.+||.+.|
T Consensus 923 ~~r~~~~R 930 (988)
T KOG2072|consen 923 FSRDDVDR 930 (988)
T ss_pred cccccccc
Confidence 34555555
No 29
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=1.2 Score=54.86 Aligned_cols=12 Identities=33% Similarity=0.565 Sum_probs=7.7
Q ss_pred hhHHHHhhhccC
Q 000243 721 DGERMVERITTS 732 (1800)
Q Consensus 721 D~eRmvERI~TS 732 (1800)
.-+.+++.|+|.
T Consensus 252 eRekwl~aInTt 263 (630)
T KOG0742|consen 252 EREKWLEAINTT 263 (630)
T ss_pred HHHHHHHHHhhh
Confidence 345677777776
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.23 E-value=0.23 Score=65.37 Aligned_cols=11 Identities=27% Similarity=0.217 Sum_probs=4.5
Q ss_pred HHHHhhhhhhh
Q 000243 549 GVVKKKKDVLK 559 (1800)
Q Consensus 549 a~mKKKKEelK 559 (1800)
..+++-.+...
T Consensus 758 ~v~kkla~s~l 768 (1018)
T KOG2002|consen 758 LVLKKLAESIL 768 (1018)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 31
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.11 E-value=0.84 Score=59.51 Aligned_cols=9 Identities=56% Similarity=0.693 Sum_probs=4.6
Q ss_pred cccccccCC
Q 000243 188 SLQAALPAA 196 (1800)
Q Consensus 188 sl~a~~p~~ 196 (1800)
.|+-|||+.
T Consensus 196 ~l~~~lp~~ 204 (697)
T PF09726_consen 196 LLQQALPPE 204 (697)
T ss_pred HHHHhCCCc
Confidence 455555544
No 32
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=93.70 E-value=2 Score=50.11 Aligned_cols=9 Identities=11% Similarity=0.025 Sum_probs=4.0
Q ss_pred HHHHHHhhh
Q 000243 547 LVGVVKKKK 555 (1800)
Q Consensus 547 lla~mKKKK 555 (1800)
...|+..|.
T Consensus 89 ye~Wl~~K~ 97 (264)
T PF13904_consen 89 YEEWLSAKE 97 (264)
T ss_pred HHHHHHHHH
Confidence 344444444
No 33
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=4.5 Score=50.28 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=3.6
Q ss_pred CCCCCcc
Q 000243 537 FDGRDPF 543 (1800)
Q Consensus 537 fDgrdpF 543 (1800)
..++||-
T Consensus 70 ~~gFDpe 76 (630)
T KOG0742|consen 70 WSGFDPE 76 (630)
T ss_pred ccCCChH
Confidence 4455554
No 34
>PRK00106 hypothetical protein; Provisional
Probab=92.03 E-value=8.1 Score=49.50 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=3.0
Q ss_pred HHhhhccC
Q 000243 725 MVERITTS 732 (1800)
Q Consensus 725 mvERI~TS 732 (1800)
...+|...
T Consensus 204 ~a~~ii~~ 211 (535)
T PRK00106 204 MAKDLLAQ 211 (535)
T ss_pred HHHHHHHH
Confidence 33333333
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.82 E-value=3.5 Score=54.10 Aligned_cols=7 Identities=57% Similarity=0.453 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 000243 547 LVGVVKK 553 (1800)
Q Consensus 547 lla~mKK 553 (1800)
+.+.+|+
T Consensus 423 LE~dvkk 429 (697)
T PF09726_consen 423 LEADVKK 429 (697)
T ss_pred HHHHHHH
Confidence 3344444
No 36
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=91.51 E-value=15 Score=43.82 Aligned_cols=9 Identities=22% Similarity=0.110 Sum_probs=4.0
Q ss_pred CcccCcCcc
Q 000243 508 NFSRDKRPL 516 (1800)
Q Consensus 508 ~F~rDkRpl 516 (1800)
+.++||..+
T Consensus 26 ~~~FDP~aL 34 (276)
T PF12037_consen 26 ASGFDPEAL 34 (276)
T ss_pred cCCCCcHHH
Confidence 444444444
No 37
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=87.67 E-value=3 Score=52.14 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=10.4
Q ss_pred CCCCCCCcccccccccC
Q 000243 75 PPPLNLPSLRKEHERFD 91 (1800)
Q Consensus 75 p~plnlpslrkeh~~~d 91 (1800)
+.||---+-.++|+--|
T Consensus 17 s~~l~ed~~~~~~ed~d 33 (708)
T KOG3654|consen 17 SKPLSEDPTKAPVEDPD 33 (708)
T ss_pred CcccccccccCCcCCCc
Confidence 45555555566777666
No 38
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=86.83 E-value=15 Score=48.90 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=5.9
Q ss_pred cCCCCCCeeecC
Q 000243 277 YFPGPLPLVRLK 288 (1800)
Q Consensus 277 ~~~gplplvrl~ 288 (1800)
+|.-|..+|-||
T Consensus 222 ~y~ep~~~~~ln 233 (782)
T PRK00409 222 LYIEPQSVVELN 233 (782)
T ss_pred EEEEcHHHHHHH
Confidence 444455555554
No 39
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=86.64 E-value=2.5 Score=50.39 Aligned_cols=7 Identities=29% Similarity=0.486 Sum_probs=2.7
Q ss_pred ccccccc
Q 000243 339 NVFERWG 345 (1800)
Q Consensus 339 ~~~~~~~ 345 (1800)
+.|.-+.
T Consensus 67 ~~f~~ya 73 (321)
T PF07946_consen 67 NEFTFYA 73 (321)
T ss_pred ceEEEEE
Confidence 3344343
No 40
>PRK12705 hypothetical protein; Provisional
Probab=84.38 E-value=63 Score=41.66 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=5.8
Q ss_pred HHHHHhhhhhhh
Q 000243 548 VGVVKKKKDVLK 559 (1800)
Q Consensus 548 la~mKKKKEelK 559 (1800)
+.+++++....+
T Consensus 22 ~~~~~~~~~~~~ 33 (508)
T PRK12705 22 VVLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHHH
Confidence 345555554433
No 41
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.23 E-value=45 Score=42.03 Aligned_cols=10 Identities=30% Similarity=0.192 Sum_probs=6.5
Q ss_pred ccccccCCCC
Q 000243 785 TQDAENGHYS 794 (1800)
Q Consensus 785 pqd~eNG~~s 794 (1800)
-=||.+||++
T Consensus 356 IldhG~gy~s 365 (420)
T COG4942 356 ILDHGGGYHS 365 (420)
T ss_pred EEEcCCccEE
Confidence 3577777764
No 42
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=84.04 E-value=4 Score=51.62 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=5.8
Q ss_pred cccCCCCCCC
Q 000243 876 WGQGRYRGNV 885 (1800)
Q Consensus 876 W~~~sS~~rP 885 (1800)
|+...+.++.
T Consensus 460 w~~~~~e~~~ 469 (492)
T PF02029_consen 460 WLTKTPEGSK 469 (492)
T ss_pred hhcCCCCCCC
Confidence 6666555554
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.12 E-value=44 Score=46.74 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=11.9
Q ss_pred cchhhhhhhhcccccCccccc
Q 000243 1220 TQLSAASELMDHLNANSCSVV 1240 (1800)
Q Consensus 1220 ~~~~~~~~~~~~~~a~~~s~~ 1240 (1800)
.+..-.-.+++-|+..-|+..
T Consensus 1159 L~~~Nv~~l~~~~~~nnI~li 1179 (1201)
T PF12128_consen 1159 LHPNNVKKLLDMCNSNNISLI 1179 (1201)
T ss_pred CChHHHHHHHHHHHhCCceEE
Confidence 445555556666666555444
No 44
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=81.50 E-value=44 Score=44.83 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=7.2
Q ss_pred cCCCCCCeeecCC
Q 000243 277 YFPGPLPLVRLKP 289 (1800)
Q Consensus 277 ~~~gplplvrl~~ 289 (1800)
+|.-|..+|-||-
T Consensus 217 ~~~ep~~~~~ln~ 229 (771)
T TIGR01069 217 FYIEPQAIVKLNN 229 (771)
T ss_pred EEEEcHHHHHHHH
Confidence 5555655665553
No 45
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=80.82 E-value=1e+02 Score=39.58 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=6.0
Q ss_pred cccCCCCCCCCCCCC
Q 000243 319 YWEGDFDMPRPSVLP 333 (1800)
Q Consensus 319 ~w~~~fd~~~~~~~p 333 (1800)
||+..|+-.-...+|
T Consensus 27 ~~n~~f~d~f~~~vP 41 (582)
T PF09731_consen 27 KQNDNFRDFFEEYVP 41 (582)
T ss_pred hcChHHHHHHHHhCC
Confidence 444444333333344
No 46
>PLN03086 PRLI-interacting factor K; Provisional
Probab=80.30 E-value=9.9 Score=49.02 Aligned_cols=9 Identities=44% Similarity=0.357 Sum_probs=4.1
Q ss_pred eeecCCCCC
Q 000243 1006 LSVSSAPDS 1014 (1800)
Q Consensus 1006 lsvsspp~s 1014 (1800)
|=||-+|-.
T Consensus 325 lfvS~~~~~ 333 (567)
T PLN03086 325 LYVSKHPLV 333 (567)
T ss_pred EEEcccccc
Confidence 444444443
No 47
>PRK11637 AmiB activator; Provisional
Probab=79.63 E-value=76 Score=39.40 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=2.6
Q ss_pred CCccccc
Q 000243 850 GDHYGRN 856 (1800)
Q Consensus 850 Gd~~gRq 856 (1800)
|+++.++
T Consensus 386 G~~V~~G 392 (428)
T PRK11637 386 GAQVRAG 392 (428)
T ss_pred cCEECCC
Confidence 3333333
No 48
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.63 E-value=33 Score=45.07 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=8.0
Q ss_pred cCCCCcccccccc
Q 000243 182 RGEDFPSLQAALP 194 (1800)
Q Consensus 182 rgedfpsl~a~~p 194 (1800)
-|+-|-++|++.+
T Consensus 472 ~G~~~~s~qs~~s 484 (1187)
T KOG0579|consen 472 QGSTFFSPQSSAS 484 (1187)
T ss_pred cCccccCccccCC
Confidence 4666667766653
No 49
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=78.24 E-value=18 Score=44.10 Aligned_cols=54 Identities=24% Similarity=0.157 Sum_probs=28.3
Q ss_pred cccccccccccccccCCCcccccCCCCchhhhhccccccccccCCCcceeecCCCCCCCCCCCccccc
Q 000243 958 SISLAGLDRSEQHNLAQPEIIDVQPESTENEEQNLERSTTSRCDSQSSLSVSSAPDSPVHLSHDDLDV 1025 (1800)
Q Consensus 958 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~e~~~~~r~~~~~~~sqsslsvsspp~sp~h~shdd~d~ 1025 (1800)
+..-++|.++||-...|-- ++ -.|++- ++.-.|-|+|.--| ||+- .||-|=.|-
T Consensus 449 saSSp~~qssyqvginqrf-------ha--aRhkf~--aqad~dqqasgl~s-p~s~--dLSP~L~d~ 502 (561)
T KOG1103|consen 449 SASSPAVQSSYQVGINQRF-------HA--ARHKFA--AQADMDQQASGLNS-PASM--DLSPDLEDL 502 (561)
T ss_pred ccCChhhhhhhhhcchhhh-------hh--ccchhh--hcccCcccccccCC-CccC--CCCccHHHH
Confidence 3445678888876333221 12 234555 46777888776543 3332 245554443
No 50
>PLN02316 synthase/transferase
Probab=77.64 E-value=41 Score=46.52 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=4.7
Q ss_pred CCceeeccccc
Q 000243 379 GNMWRASSSLQ 389 (1800)
Q Consensus 379 ~~~Wr~~sPl~ 389 (1800)
+|.|++-+...
T Consensus 140 ~~~~f~~P~~~ 150 (1036)
T PLN02316 140 GNKLFVYPQVV 150 (1036)
T ss_pred CCeEEeccccc
Confidence 34444444333
No 51
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=77.61 E-value=2.5e+02 Score=38.60 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=3.6
Q ss_pred CCcccccCC
Q 000243 525 DDPFMKDFG 533 (1800)
Q Consensus 525 EDp~MqDFg 533 (1800)
+|++..++.
T Consensus 311 ~~~~~~~~~ 319 (980)
T KOG0980|consen 311 LDLFEAEPA 319 (980)
T ss_pred ccccccCcc
Confidence 344444443
No 52
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.17 E-value=23 Score=42.29 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=8.5
Q ss_pred CCCCCCCCCCccccC
Q 000243 798 DSAFGGRAVPRKEFY 812 (1800)
Q Consensus 798 Ds~~g~R~fprlefy 812 (1800)
|++-=+++|||..|.
T Consensus 249 ~P~~f~t~fPR~tf~ 263 (290)
T KOG2689|consen 249 DPYSFHTGFPRVTFT 263 (290)
T ss_pred CCeeeecCCCceecc
Confidence 455556666666443
No 53
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=74.88 E-value=21 Score=45.32 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=6.6
Q ss_pred ccchhHhhhchhhh
Q 000243 205 DGFSQKQKQGMSQE 218 (1800)
Q Consensus 205 ~~~~qk~k~~~~~~ 218 (1800)
+.|.-||+|.|+.-
T Consensus 119 ea~fakqrqklgks 132 (708)
T KOG3654|consen 119 EAIFAKQRQKLGKS 132 (708)
T ss_pred HHHHHHHHHHhchh
Confidence 33444555555443
No 54
>PLN02316 synthase/transferase
Probab=73.00 E-value=56 Score=45.29 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=4.3
Q ss_pred hhHhhhccc
Q 000243 267 RSEQVRKQE 275 (1800)
Q Consensus 267 ~~e~~rk~~ 275 (1800)
+.|+.||+.
T Consensus 120 ~~~~~~~~~ 128 (1036)
T PLN02316 120 ERENLRKRE 128 (1036)
T ss_pred hHHHHHHHH
Confidence 344555544
No 55
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=72.73 E-value=1.9e+02 Score=35.98 Aligned_cols=14 Identities=14% Similarity=-0.021 Sum_probs=7.5
Q ss_pred ccccchhhhhhhhc
Q 000243 1217 QDNTQLSAASELMD 1230 (1800)
Q Consensus 1217 ~~~~~~~~~~~~~~ 1230 (1800)
++||.+..+.+-.-
T Consensus 510 ~~gps~~q~l~Rf~ 523 (561)
T KOG1103|consen 510 NAGPSSNQALERFL 523 (561)
T ss_pred hcCCchhHHHHHHH
Confidence 45666555555443
No 56
>PTZ00491 major vault protein; Provisional
Probab=72.48 E-value=1.1e+02 Score=41.70 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=6.1
Q ss_pred CCcccccCCCC
Q 000243 150 DGVGVYVPPSV 160 (1800)
Q Consensus 150 ~~~~~~~~~s~ 160 (1800)
++.|.|+|..-
T Consensus 198 t~~gaylP~v~ 208 (850)
T PTZ00491 198 RTPGAYLPGVF 208 (850)
T ss_pred eccccccCCCc
Confidence 44666666543
No 57
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=72.13 E-value=1.9e+02 Score=36.70 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=16.2
Q ss_pred ccCCCCcchhhhccccCCcccccCC
Q 000243 825 KAGILEPHMDEFTVSRGQRWNMSGD 849 (1800)
Q Consensus 825 kGgtTD~~~DDYr~~r~qRWnAp~D 849 (1800)
.|....+.++=-.....+||..+.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~rws~~~d 266 (445)
T PRK13428 242 SGKVGAPTLEVLRTAVSQRWSANSD 266 (445)
T ss_pred CcCCCHHHHHHHHHHHhCccCcccc
Confidence 3444445555455678899988866
No 58
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=71.56 E-value=90 Score=42.47 Aligned_cols=15 Identities=40% Similarity=0.724 Sum_probs=7.3
Q ss_pred ccccCC-CCCCCCCCCC
Q 000243 318 AYWEGD-FDMPRPSVLP 333 (1800)
Q Consensus 318 ~~w~~~-fd~~~~~~~p 333 (1800)
+-|+++ |.| +--|||
T Consensus 752 pvy~eepfvF-~KVvLp 767 (1189)
T KOG1265|consen 752 PVYEEEPFVF-RKVVLP 767 (1189)
T ss_pred cccccCCccc-ceeccc
Confidence 345544 444 344666
No 59
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=71.46 E-value=1.3e+02 Score=37.96 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=6.0
Q ss_pred ccccccCCCCchhh
Q 000243 189 LQAALPAASGSEKK 202 (1800)
Q Consensus 189 l~a~~p~~~~~~~k 202 (1800)
|||..|+--+++.|
T Consensus 82 lqagtpplqVnEEk 95 (672)
T KOG4722|consen 82 LQAGTPPLQVNEEK 95 (672)
T ss_pred HhcCCCCCCCchhh
Confidence 34444444444433
No 60
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.96 E-value=1.3e+02 Score=40.19 Aligned_cols=11 Identities=27% Similarity=0.619 Sum_probs=5.3
Q ss_pred CCccccCCCCc
Q 000243 710 LPKMADVGDWE 720 (1800)
Q Consensus 710 l~K~kd~dDwE 720 (1800)
+.+.++..-|+
T Consensus 965 LlRarEaaiWE 975 (1187)
T KOG0579|consen 965 LLRAREAAIWE 975 (1187)
T ss_pred HHHHHHHHHhH
Confidence 44444444455
No 61
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=69.80 E-value=43 Score=40.36 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=5.3
Q ss_pred CCCccccccccC
Q 000243 336 PAHNVFERWGQR 347 (1800)
Q Consensus 336 ~~~~~~~~~~qr 347 (1800)
|++-.||+|=-|
T Consensus 3 ~~NiM~D~RV~R 14 (291)
T PF06098_consen 3 YGNIMYDRRVVR 14 (291)
T ss_pred cccccCCCCcCC
Confidence 344445544333
No 62
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=69.50 E-value=1.6e+02 Score=37.02 Aligned_cols=12 Identities=33% Similarity=0.277 Sum_probs=4.6
Q ss_pred hhHHHHhhhccC
Q 000243 721 DGERMVERITTS 732 (1800)
Q Consensus 721 D~eRmvERI~TS 732 (1800)
.++.-..+|..|
T Consensus 417 ~leefkrriles 428 (442)
T PF06637_consen 417 SLEEFKRRILES 428 (442)
T ss_pred HHHHHHHHHHhc
Confidence 333333344333
No 63
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=69.24 E-value=1.3e+02 Score=42.03 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=36.1
Q ss_pred cCCCCCCccCCCcccccccccCCCCccccccccCCCCchh--hhcccch---hHhhhchhhhccccccCCCCCCCc
Q 000243 162 SGTVGPALSSFAPAEKASVLRGEDFPSLQAALPAASGSEK--KQKDGFS---QKQKQGMSQELGNNEQKDGCRFNA 232 (1800)
Q Consensus 162 ~~~~~~~~~~~~~~e~~~vlrgedfpsl~a~~p~~~~~~~--k~~~~~~---qk~k~~~~~~~~~~e~~~~~~~~~ 232 (1800)
+|.++|-...|..+|+-+ --+|+.|-+++++.. ++-...- .||-|.+-+.|..-|.+-.+-.++
T Consensus 1193 tGv~gay~s~f~~me~kl-------~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~ 1261 (1758)
T KOG0994|consen 1193 TGVLGAYASRFLDMEEKL-------EEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNS 1261 (1758)
T ss_pred ccCchhhHhHHHHHHHHH-------HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 566666555555554332 124566656666655 2322222 377788888888666665554433
No 64
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=68.72 E-value=12 Score=46.65 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=5.8
Q ss_pred ccccccCCCCCC
Q 000243 907 RSRYSMRHPRVL 918 (1800)
Q Consensus 907 r~ry~~rqprvl 918 (1800)
|+|--|+.|--.
T Consensus 464 rsr~~~~Rp~~~ 475 (506)
T KOG2507|consen 464 RSRRRMPRPAEV 475 (506)
T ss_pred hhhhcCcCCccc
Confidence 555555444333
No 65
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=68.49 E-value=1e+02 Score=42.93 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=4.5
Q ss_pred HHHHHHhhhhh
Q 000243 547 LVGVVKKKKDV 557 (1800)
Q Consensus 547 lla~mKKKKEe 557 (1800)
+...|++....
T Consensus 1516 L~~~I~e~v~s 1526 (1758)
T KOG0994|consen 1516 LTGEIQERVAS 1526 (1758)
T ss_pred HHHHHHHHHHh
Confidence 33444443333
No 66
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=67.83 E-value=1.9e+02 Score=42.88 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=4.7
Q ss_pred CCccccccc
Q 000243 185 DFPSLQAAL 193 (1800)
Q Consensus 185 dfpsl~a~~ 193 (1800)
||.-|....
T Consensus 302 ~Y~f~~~~~ 310 (1930)
T KOG0161|consen 302 DYKFLSNGE 310 (1930)
T ss_pred hhhhhcccc
Confidence 555555544
No 67
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.43 E-value=57 Score=39.18 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=6.6
Q ss_pred cccCCCCCCcccc
Q 000243 809 KEFYGGPGIMSSR 821 (1800)
Q Consensus 809 lefyggaGFvKKr 821 (1800)
.+|....||+++.
T Consensus 249 ~P~~f~t~fPR~t 261 (290)
T KOG2689|consen 249 DPYSFHTGFPRVT 261 (290)
T ss_pred CCeeeecCCCcee
Confidence 3455555555544
No 68
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=65.17 E-value=1.7e+02 Score=40.05 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=5.9
Q ss_pred ccccCcccccc
Q 000243 421 KFMSSPFRDTV 431 (1800)
Q Consensus 421 kYv~s~~r~~v 431 (1800)
-||+--|.+.+
T Consensus 824 dyvpd~~~d~~ 834 (1189)
T KOG1265|consen 824 DYVPDDLSDLV 834 (1189)
T ss_pred ccCCchhhhHH
Confidence 45555555544
No 69
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=64.85 E-value=2.4e+02 Score=41.94 Aligned_cols=11 Identities=9% Similarity=-0.197 Sum_probs=6.1
Q ss_pred ccCCCCCCCCC
Q 000243 253 RENGGINHDTG 263 (1800)
Q Consensus 253 ~~~~~~~~~~g 263 (1800)
+-++-..|.+.
T Consensus 454 DiaGFEIfe~n 464 (1930)
T KOG0161|consen 454 DIAGFEIFEFN 464 (1930)
T ss_pred eeccccccCcC
Confidence 55555555554
No 70
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=63.15 E-value=13 Score=50.05 Aligned_cols=25 Identities=44% Similarity=0.570 Sum_probs=12.0
Q ss_pred CCCCCCCC----CCCCCCCCCCceEEeec
Q 000243 36 HSGYYGSN----RARPTGGGGGGMLVLSR 60 (1800)
Q Consensus 36 ~~g~~~~~----~~~~~~~~~ggm~vlsr 60 (1800)
++|+||.+ ++++|.|.|||.-=.||
T Consensus 1204 gsGGYGgsa~~~~~~~Gagvg~GyrGvsr 1232 (1282)
T KOG0921|consen 1204 GSGGYGGSAPSARANYGAGVGNGYRGVSR 1232 (1282)
T ss_pred CCCCCCCCCCCCCCCccccccCCCccccC
Confidence 44555443 24445555666633333
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=62.45 E-value=3.1e+02 Score=34.98 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=10.5
Q ss_pred cccccccCCCcceeecCCC
Q 000243 994 RSTTSRCDSQSSLSVSSAP 1012 (1800)
Q Consensus 994 r~~~~~~~sqsslsvsspp 1012 (1800)
|-..-+|.|-.+-.|=||-
T Consensus 380 sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred eccccccccccceeEECCC
Confidence 3344556666666665553
No 72
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=61.26 E-value=50 Score=42.08 Aligned_cols=10 Identities=30% Similarity=0.531 Sum_probs=5.2
Q ss_pred CCCccccccc
Q 000243 291 SDWADDERDT 300 (1800)
Q Consensus 291 sdwadderdt 300 (1800)
..|-+|..+-
T Consensus 63 ~~~r~~~~~~ 72 (460)
T KOG1363|consen 63 FNYRDDNVDV 72 (460)
T ss_pred hcccccCCCc
Confidence 5555555543
No 73
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=61.03 E-value=34 Score=43.43 Aligned_cols=8 Identities=0% Similarity=-0.492 Sum_probs=3.4
Q ss_pred CCCCCCcc
Q 000243 503 NDPMHNFS 510 (1800)
Q Consensus 503 nDP~~~F~ 510 (1800)
+++++|+.
T Consensus 216 ~~~llw~~ 223 (460)
T KOG1363|consen 216 ENFLLWGW 223 (460)
T ss_pred hceeeecc
Confidence 34444443
No 74
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=60.81 E-value=12 Score=46.68 Aligned_cols=8 Identities=25% Similarity=0.264 Sum_probs=3.3
Q ss_pred ccccccCC
Q 000243 785 TQDAENGH 792 (1800)
Q Consensus 785 pqd~eNG~ 792 (1800)
-|.+-+++
T Consensus 345 rq~~~i~~ 352 (506)
T KOG2507|consen 345 RQNQTIGL 352 (506)
T ss_pred Hhcccccc
Confidence 34444443
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=60.04 E-value=3.8e+02 Score=39.14 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=9.7
Q ss_pred CchhhhhHHHHHhhhhh
Q 000243 1200 SGILQETDKAIQDLVVQ 1216 (1800)
Q Consensus 1200 ~~~~~e~eka~q~l~i~ 1216 (1800)
-..++|++..|++|-|+
T Consensus 1033 ~e~L~E~eqe~~~~g~~ 1049 (1486)
T PRK04863 1033 RQMLQELKQELQDLGVP 1049 (1486)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 33455566666666665
No 76
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.07 E-value=1.3e+02 Score=40.52 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=7.1
Q ss_pred CcccccccccCCCCC
Q 000243 81 PSLRKEHERFDSSGS 95 (1800)
Q Consensus 81 pslrkeh~~~d~~~~ 95 (1800)
|-+--.|-.+-++|.
T Consensus 83 ~~f~v~~i~~n~~g~ 97 (717)
T PF10168_consen 83 PLFEVHQISLNPTGS 97 (717)
T ss_pred CceeEEEEEECCCCC
Confidence 445555555544443
No 77
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=59.04 E-value=4.3e+02 Score=33.74 Aligned_cols=7 Identities=57% Similarity=0.881 Sum_probs=2.8
Q ss_pred HHhhhhh
Q 000243 551 VKKKKDV 557 (1800)
Q Consensus 551 mKKKKEe 557 (1800)
+++++++
T Consensus 281 VRk~kE~ 287 (672)
T KOG4722|consen 281 VRKKKEA 287 (672)
T ss_pred HHHHHHH
Confidence 3344443
No 78
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=53.65 E-value=33 Score=37.03 Aligned_cols=63 Identities=29% Similarity=0.421 Sum_probs=34.0
Q ss_pred CCCCCCCccccccccccCcccCCCCccCCCCCCCCCcccccCCCCCcCC-CCCCccCCCccccccccc-CCCCccccccc
Q 000243 116 TGWTKPGTAVGSDQKINDKVDQGPHSVDGLSKGNDGVGVYVPPSVRSGT-VGPALSSFAPAEKASVLR-GEDFPSLQAAL 193 (1800)
Q Consensus 116 ~gw~kp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~e~~~vlr-gedfpsl~a~~ 193 (1800)
.=|.|++++.......- +... --...++|||.||.+|-.. .-....+ |==|- =+-||||+||.
T Consensus 59 GPWnk~~~~~~~~~~~~--v~~~-------~~p~~~~gvY~PP~~R~~~~~r~~~qg------aPdI~Se~~FPSL~sta 123 (129)
T PF15359_consen 59 GPWNKSAPAQAPPAPAP--VEEP-------PEPATTSGVYRPPAARNTTTKRKRPQG------APDIFSEEQFPSLQSTA 123 (129)
T ss_pred CCCcCCCCCCCCCCCCc--cCCC-------CCCCCCCceecCcccccccccCCCCCC------CCCccccccccchHHHh
Confidence 36999887544444432 1111 1135688999999999332 1111111 01111 24799999874
No 79
>PTZ00491 major vault protein; Provisional
Probab=52.49 E-value=3e+02 Score=37.76 Aligned_cols=8 Identities=50% Similarity=0.779 Sum_probs=4.6
Q ss_pred CCcccccc
Q 000243 347 RDSETGKV 354 (1800)
Q Consensus 347 r~~~~g~~ 354 (1800)
||..+|||
T Consensus 389 rD~kTgkv 396 (850)
T PTZ00491 389 RNITTGEV 396 (850)
T ss_pred EECCCCcE
Confidence 45566664
No 80
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=51.21 E-value=6.4e+02 Score=34.41 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=13.6
Q ss_pred HHHHhhhccCCCCCCCCCCcCcCCCCCCccc
Q 000243 723 ERMVERITTSASSDSSGLHRSFDMSSRNQFA 753 (1800)
Q Consensus 723 eRmvERI~TSsSSdSSd~nrs~rsvsR~~tS 753 (1800)
-++.+.|-.- ..++-+.++.+..-|+-++
T Consensus 671 lrl~~eigpg--~l~dav~rl~ragrrvgi~ 699 (828)
T PF04094_consen 671 LRLTNEIGPG--QLSDAVSRLERAGRRVGIS 699 (828)
T ss_pred HHhhcccCcc--hhhhHHHHHHhhccccccc
Confidence 3444444333 3455555555555555333
No 81
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=50.91 E-value=6e+02 Score=35.02 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=9.7
Q ss_pred CCCCccccceeEE
Q 000243 1534 PRRPRRQRTEFRV 1546 (1800)
Q Consensus 1534 ~r~~~~~rtefrv 1546 (1800)
+++.+--|||||-
T Consensus 1197 ~~tvlaeRt~l~c 1209 (1265)
T KOG0976|consen 1197 PHTVLAERTELRC 1209 (1265)
T ss_pred chhhhhhhhheee
Confidence 4567778999984
No 82
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.86 E-value=6.7e+02 Score=32.40 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=3.8
Q ss_pred HHHHhhhhh
Q 000243 549 GVVKKKKDV 557 (1800)
Q Consensus 549 a~mKKKKEe 557 (1800)
..+++|..+
T Consensus 225 ~flerkv~e 233 (502)
T KOG0982|consen 225 RFLERKVQE 233 (502)
T ss_pred HHHHHHHHH
Confidence 334444443
No 83
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.88 E-value=8.1e+02 Score=34.69 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=9.8
Q ss_pred CCCCCcchhhHHHHHHhhhhh
Q 000243 537 FDGRDPFSAGLVGVVKKKKDV 557 (1800)
Q Consensus 537 fDgrdpFa~~lla~mKKKKEe 557 (1800)
-+|..++...++..+.+-.+.
T Consensus 662 TGGs~~~~a~~L~~l~~l~~~ 682 (1174)
T KOG0933|consen 662 TGGSRSKGADLLRQLQKLKQA 682 (1174)
T ss_pred cCCCCCCcccHHHHHHHHHHH
Confidence 345555544455554444333
No 84
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=48.70 E-value=1.1e+02 Score=39.95 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=8.2
Q ss_pred ccCccccccccccccc
Q 000243 469 QYGSEQYNRFRGDAFQ 484 (1800)
Q Consensus 469 ~ygi~qynr~rgdsfQ 484 (1800)
.||+.|-.-|...-+|
T Consensus 199 N~GG~qa~dYL~~Lmq 214 (645)
T KOG0681|consen 199 NWGGYQAGDYLSRLMQ 214 (645)
T ss_pred ccCcchHHHHHHHHHh
Confidence 4555555555544443
No 85
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=48.29 E-value=5.6e+02 Score=37.05 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=4.6
Q ss_pred ccccCCCCcee
Q 000243 1496 GLTSGSRGKRY 1506 (1800)
Q Consensus 1496 ~~~sg~rg~~y 1506 (1800)
+..|||.-++-
T Consensus 1246 ~~lSgGek~~~ 1256 (1353)
T TIGR02680 1246 GPASGGERALA 1256 (1353)
T ss_pred cCCCchHHHHH
Confidence 33444444433
No 86
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=47.96 E-value=34 Score=42.53 Aligned_cols=7 Identities=29% Similarity=-0.021 Sum_probs=2.9
Q ss_pred CCCcccc
Q 000243 448 QPWNNSV 454 (1800)
Q Consensus 448 Qpwn~~m 454 (1800)
|+++.||
T Consensus 190 qriIrmV 196 (506)
T KOG2441|consen 190 QRIIRMV 196 (506)
T ss_pred hhhhhhh
Confidence 4444443
No 87
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.76 E-value=5.5e+02 Score=34.38 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=5.8
Q ss_pred CCCcchhhHHHH
Q 000243 539 GRDPFSAGLVGV 550 (1800)
Q Consensus 539 grdpFa~~lla~ 550 (1800)
.+|-.++++.++
T Consensus 343 ~RDALAAA~kAY 354 (652)
T COG2433 343 ERDALAAAYKAY 354 (652)
T ss_pred HHHHHHHHHHHH
Confidence 334445555554
No 88
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=46.42 E-value=33 Score=42.03 Aligned_cols=29 Identities=38% Similarity=0.804 Sum_probs=22.7
Q ss_pred ccccCCCCCCCcccccccccCCCCCCCCC
Q 000243 71 KLSVPPPLNLPSLRKEHERFDSSGSNGGP 99 (1800)
Q Consensus 71 klsvp~plnlpslrkeh~~~d~~~~~~~~ 99 (1800)
.-.||||-..||.++-..-||.-|+-||.
T Consensus 310 nE~~ppppempswqqqq~~~~~~ggrggg 338 (465)
T KOG3973|consen 310 NEMVPPPPEMPSWQQQQHTFDRQGGRGGG 338 (465)
T ss_pred ccCCCCCCCCCcHHHhcCCCCCCCCcCCC
Confidence 34589999999999998888887664433
No 89
>PRK04863 mukB cell division protein MukB; Provisional
Probab=46.25 E-value=9.8e+02 Score=35.28 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=5.3
Q ss_pred cccccCCccc
Q 000243 867 ITERYGDVGW 876 (1800)
Q Consensus 867 igerfGd~gW 876 (1800)
+.-+|+|..|
T Consensus 759 v~~~~~~~~~ 768 (1486)
T PRK04863 759 VVVKIADRQW 768 (1486)
T ss_pred eeeeecchhh
Confidence 3445555555
No 90
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=45.99 E-value=1.7e+02 Score=38.41 Aligned_cols=6 Identities=33% Similarity=0.850 Sum_probs=2.9
Q ss_pred ccCccc
Q 000243 469 QYGSEQ 474 (1800)
Q Consensus 469 ~ygi~q 474 (1800)
+|||..
T Consensus 149 ~yGIDs 154 (645)
T KOG0681|consen 149 AYGIDS 154 (645)
T ss_pred eechhh
Confidence 455543
No 91
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.75 E-value=3.8e+02 Score=33.08 Aligned_cols=11 Identities=9% Similarity=0.501 Sum_probs=4.5
Q ss_pred ccccCcccccc
Q 000243 421 KFMSSPFRDTV 431 (1800)
Q Consensus 421 kYv~s~~r~~v 431 (1800)
-|+.+-|-.-+
T Consensus 120 dyidaQFEaYL 130 (406)
T KOG3859|consen 120 DYIDAQFEAYL 130 (406)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=44.07 E-value=7.1e+02 Score=33.24 Aligned_cols=10 Identities=50% Similarity=0.903 Sum_probs=5.6
Q ss_pred ccccccccCC
Q 000243 187 PSLQAALPAA 196 (1800)
Q Consensus 187 psl~a~~p~~ 196 (1800)
|++.+.||..
T Consensus 47 p~~~~~l~~~ 56 (594)
T PF05667_consen 47 PSLGSSLPRS 56 (594)
T ss_pred ccccCCCccc
Confidence 5665555553
No 93
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=43.31 E-value=1.4e+02 Score=34.18 Aligned_cols=6 Identities=0% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCCccc
Q 000243 524 QDDPFM 529 (1800)
Q Consensus 524 ~EDp~M 529 (1800)
+|..++
T Consensus 17 ~~~~~~ 22 (190)
T PF06936_consen 17 LENEDL 22 (190)
T ss_dssp ------
T ss_pred CcchhH
Confidence 344444
No 94
>PRK12472 hypothetical protein; Provisional
Probab=42.81 E-value=4.1e+02 Score=34.61 Aligned_cols=10 Identities=0% Similarity=-0.489 Sum_probs=5.5
Q ss_pred ccCccccccc
Q 000243 469 QYGSEQYNRF 478 (1800)
Q Consensus 469 ~ygi~qynr~ 478 (1800)
.|+||..+++
T Consensus 122 GiaIHGt~~p 131 (508)
T PRK12472 122 GIALHGGPLP 131 (508)
T ss_pred eEEEecCCCC
Confidence 3566665543
No 95
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=41.77 E-value=1.1e+03 Score=32.53 Aligned_cols=9 Identities=22% Similarity=0.530 Sum_probs=4.8
Q ss_pred CCccccccc
Q 000243 779 NSSTFITQD 787 (1800)
Q Consensus 779 ~SSaFlpqd 787 (1800)
++-.|+|-+
T Consensus 573 gr~tflpl~ 581 (1164)
T TIGR02169 573 GRATFLPLN 581 (1164)
T ss_pred CCeeeccHh
Confidence 345566644
No 96
>COG4499 Predicted membrane protein [Function unknown]
Probab=41.47 E-value=73 Score=39.87 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=11.3
Q ss_pred hhHHHHHHhhhhhhhccccc
Q 000243 545 AGLVGVVKKKKDVLKQTDFH 564 (1800)
Q Consensus 545 ~~lla~mKKKKEelKqaE~e 564 (1800)
..+++.+|+..+..-....-
T Consensus 344 ~~~~Al~k~~eevksn~~ls 363 (434)
T COG4499 344 LTLLALTKLYEEVKSNTDLS 363 (434)
T ss_pred hHHHHHHHHHHHHhcccCCC
Confidence 45567777766655433333
No 97
>PLN03188 kinesin-12 family protein; Provisional
Probab=39.93 E-value=1.1e+03 Score=34.27 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=6.0
Q ss_pred CccccCCCCCCC
Q 000243 70 PKLSVPPPLNLP 81 (1800)
Q Consensus 70 ~klsvp~plnlp 81 (1800)
++|-.|-|.+.|
T Consensus 65 ~~~~sp~p~~pp 76 (1320)
T PLN03188 65 AKLKSPLPPRPP 76 (1320)
T ss_pred ccccCCCCCCCC
Confidence 444555555544
No 98
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=39.48 E-value=8.6e+02 Score=30.38 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=8.4
Q ss_pred CCCCCceeeccccc
Q 000243 376 GREGNMWRASSSLQ 389 (1800)
Q Consensus 376 g~e~~~Wr~~sPl~ 389 (1800)
|+.-++|+..+.+.
T Consensus 53 gr~r~~~~lr~~~~ 66 (340)
T KOG3756|consen 53 GRGRGSLLLRRGFS 66 (340)
T ss_pred cchhhhhhhhhhhh
Confidence 45555777776553
No 99
>PRK12472 hypothetical protein; Provisional
Probab=39.06 E-value=6.5e+02 Score=32.98 Aligned_cols=7 Identities=43% Similarity=0.923 Sum_probs=2.7
Q ss_pred ccccCCC
Q 000243 909 RYSMRHP 915 (1800)
Q Consensus 909 ry~~rqp 915 (1800)
||.-+||
T Consensus 481 ~~~~~~~ 487 (508)
T PRK12472 481 RYPKPQP 487 (508)
T ss_pred cCCCCCC
Confidence 3333333
No 100
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.34 E-value=7.2e+02 Score=35.61 Aligned_cols=11 Identities=27% Similarity=0.172 Sum_probs=5.5
Q ss_pred ccccccccccc
Q 000243 853 YGRNIEMESDF 863 (1800)
Q Consensus 853 ~gRq~eIdSdq 863 (1800)
+||..-|-++.
T Consensus 666 LgraTFi~LDk 676 (1293)
T KOG0996|consen 666 LGRATFIILDK 676 (1293)
T ss_pred CCceeEEehHh
Confidence 55555554443
No 101
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=36.22 E-value=25 Score=43.03 Aligned_cols=19 Identities=47% Similarity=0.835 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCCCCCCCc
Q 000243 36 HSGYYGSNRARPTGGGGGG 54 (1800)
Q Consensus 36 ~~g~~~~~~~~~~~~~~gg 54 (1800)
+||+.|..+|.+||||+||
T Consensus 441 gggr~gggrgrgggggrg~ 459 (465)
T KOG3973|consen 441 GGGRDGGGRGRGGGGGRGG 459 (465)
T ss_pred CCCCCCCCCCCCCCCCCcc
Confidence 4444444444444445554
No 102
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=35.03 E-value=3e+02 Score=35.52 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000243 36 HSGYYGSNRARPTGGGGGGM 55 (1800)
Q Consensus 36 ~~g~~~~~~~~~~~~~~ggm 55 (1800)
++|+.+...+++|+++||||
T Consensus 71 ~s~~g~~s~~~gg~~~~~g~ 90 (641)
T KOG3915|consen 71 GSGGGGGSSGNGGGGGGGGG 90 (641)
T ss_pred CCCCCccccCCCCCCCCCCC
Confidence 33443444444455555555
No 103
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=34.69 E-value=2.7e+02 Score=35.82 Aligned_cols=8 Identities=50% Similarity=0.580 Sum_probs=3.3
Q ss_pred ccccccCC
Q 000243 177 KASVLRGE 184 (1800)
Q Consensus 177 ~~~vlrge 184 (1800)
|-|-|||-
T Consensus 178 KmVd~rG~ 185 (641)
T KOG3915|consen 178 KMVDLRGA 185 (641)
T ss_pred eeeeecCc
Confidence 33444443
No 104
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.08 E-value=1.5e+03 Score=32.69 Aligned_cols=6 Identities=33% Similarity=0.457 Sum_probs=2.3
Q ss_pred cccccC
Q 000243 786 QDAENG 791 (1800)
Q Consensus 786 qd~eNG 791 (1800)
.-+|+|
T Consensus 608 r~kesG 613 (1293)
T KOG0996|consen 608 RLKESG 613 (1293)
T ss_pred HHHHcC
Confidence 333333
No 105
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=34.03 E-value=7e+02 Score=27.76 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000243 565 DPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAE 644 (1800)
Q Consensus 565 dqeREElEaELErkrreeEEERrRkEEErKRreEEeRREEEERERkeREEEEErRReEEEeRErEErEEEERlEaERRaE 644 (1800)
++.+.+.+++.++.....+++......+.+++.++...+..++.+++.....++.+.......+.......+.--..--+
T Consensus 8 ~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~ 87 (188)
T PRK02292 8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRN 87 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 000243 645 EQRIA 649 (1800)
Q Consensus 645 EERKR 649 (1800)
+.+.+
T Consensus 88 ~a~~k 92 (188)
T PRK02292 88 QVEDE 92 (188)
T ss_pred HHHHH
No 106
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=33.15 E-value=1e+03 Score=30.25 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=6.2
Q ss_pred ccccccCCCCCCC
Q 000243 488 ASKSSFSSGGRGF 500 (1800)
Q Consensus 488 ~sk~sFSlG~nGl 500 (1800)
|.+.++-+++.|+
T Consensus 130 feva~~dl~~mGi 142 (428)
T KOG2668|consen 130 FEVAQLDLGQMGI 142 (428)
T ss_pred HHHhhhhhhhcce
Confidence 3344445555554
No 107
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=28.37 E-value=2.1e+03 Score=31.58 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=5.1
Q ss_pred hhHHHHhhhccC
Q 000243 721 DGERMVERITTS 732 (1800)
Q Consensus 721 D~eRmvERI~TS 732 (1800)
.+..++++....
T Consensus 760 ~Lq~~LEqe~~~ 771 (1317)
T KOG0612|consen 760 KLQSMLEQEISK 771 (1317)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 108
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=28.26 E-value=1.8e+03 Score=30.85 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=12.3
Q ss_pred CCCCccceEEeeecccCCCCCCCCCcc
Q 000243 1270 LSQAETPVKLQFGLFSGPSLIPSPFPA 1296 (1800)
Q Consensus 1270 ~~~~e~pv~lqfglfsgpslipsp~pa 1296 (1800)
+.|++-|-++ -||.-|-|--|-
T Consensus 972 isqprNpsri-----agp~svtslE~m 993 (1265)
T KOG0976|consen 972 ISQPRNPSRI-----AGPKSVTSLEPM 993 (1265)
T ss_pred eecCCCchhh-----cCcccccccccc
Confidence 4556655553 566666665443
No 109
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=27.30 E-value=8e+02 Score=30.14 Aligned_cols=12 Identities=8% Similarity=0.183 Sum_probs=5.4
Q ss_pred hhHHHHhhhccC
Q 000243 721 DGERMVERITTS 732 (1800)
Q Consensus 721 D~eRmvERI~TS 732 (1800)
++......|...
T Consensus 338 el~~~a~~i~a~ 349 (379)
T COG5269 338 ELGQLAADIKAE 349 (379)
T ss_pred HHHHHHHHhhhh
Confidence 344444444443
No 110
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=27.13 E-value=3.6e+02 Score=32.96 Aligned_cols=125 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhhhhhhcccccCchhhHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHH
Q 000243 544 SAGLVGVVKKKKDVLKQTDFHDPVRESFEAEL----------------------------ERVQKMQEQERQRIIEEQER 595 (1800)
Q Consensus 544 a~~lla~mKKKKEelKqaE~edqeREElEaEL----------------------------ErkrreeEEERrRkEEErKR 595 (1800)
++-++..||+...+.++-+..++.-++-...- +.+.+.+..-+.|..+..++
T Consensus 11 agR~~~L~KkRE~qre~ie~~k~k~~e~~~~~~i~~kf~a~ydaVe~~lKssTvGLVtL~Dmk~kqeniVreRekqlak~ 90 (331)
T KOG2894|consen 11 AGRAMHLMKKRERQREQIEQLKQKIAEENILKGIDNKFSAHYDAVEEELKSSTVGLVTLDDMKAKQENIVREREKQLAKK 90 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhccccHHHHHHHHhhcccceEEHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Q 000243 596 ALELARREEEERLRVAREQEEQRRR---------LEEETREAVWRAEQEQLEA--------------TRKAEEQRIAREE 652 (1800)
Q Consensus 596 reEEeRREEEERERkeREEEEErRR---------eEEEeRErEErEEEERlEa--------------ERRaEEERKRkEE 652 (1800)
+....++++.+.++..++..+..+. .++++...+.+..-.++.. ..+++++.+.+|+
T Consensus 91 ~~~k~q~k~~e~~~eKe~K~~kkr~~s~LSFa~DdEededD~~~k~~~~Kk~klGKdP~VDTSFLPDrEREeeEnr~RE~ 170 (331)
T KOG2894|consen 91 KLSKTQQKKRELAREKEEKKEKKRQISRLSFALDDEEDEDDAEEKSIPLKKGKLGKDPDVDTSFLPDREREEEENRLREE 170 (331)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhcchhhhhcCCCCCcccccCCchhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 000243 653 ERQRIIMEEERRKHAA 668 (1800)
Q Consensus 653 EeRRreEEEERRKEEE 668 (1800)
-++....++++-+-++
T Consensus 171 L~~eW~~~qe~~K~Ee 186 (331)
T KOG2894|consen 171 LRQEWEAKQEKIKNEE 186 (331)
T ss_pred HHHHHHHHHHHhcCCc
No 111
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.07 E-value=2.6e+02 Score=36.31 Aligned_cols=10 Identities=50% Similarity=0.547 Sum_probs=3.9
Q ss_pred CCCCCceeec
Q 000243 376 GREGNMWRAS 385 (1800)
Q Consensus 376 g~e~~~Wr~~ 385 (1800)
||+|+.-.++
T Consensus 352 gr~G~Aivfl 361 (567)
T KOG0345|consen 352 GREGNAIVFL 361 (567)
T ss_pred cCccceEEEe
Confidence 4444433333
No 112
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=26.94 E-value=5.9e+02 Score=31.22 Aligned_cols=7 Identities=57% Similarity=1.227 Sum_probs=2.8
Q ss_pred ccccCCC
Q 000243 274 QEEYFPG 280 (1800)
Q Consensus 274 ~~~~~~g 280 (1800)
..+||-|
T Consensus 19 ~~~~f~~ 25 (379)
T COG5269 19 HSEYFKG 25 (379)
T ss_pred HHHHhcc
Confidence 3334443
No 113
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=26.84 E-value=1.4e+03 Score=31.39 Aligned_cols=13 Identities=23% Similarity=0.232 Sum_probs=9.9
Q ss_pred cCCCCCCCCCccc
Q 000243 912 MRHPRVLPPPTLT 924 (1800)
Q Consensus 912 ~rqprvlppp~~~ 924 (1800)
||++-|+++|.-+
T Consensus 440 ~~~~~~~~~p~~~ 452 (916)
T KOG0249|consen 440 MDRMGVMTLPSDL 452 (916)
T ss_pred ccCCccccCcccc
Confidence 7888888888443
No 114
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=26.45 E-value=1.4e+03 Score=31.85 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=9.7
Q ss_pred CCccccCCCCCCCccc
Q 000243 69 VPKLSVPPPLNLPSLR 84 (1800)
Q Consensus 69 ~~klsvp~plnlpslr 84 (1800)
--|-|--.|+| |-++
T Consensus 229 elkrSTel~in-PD~~ 243 (1424)
T KOG4572|consen 229 ELKRSTELPIN-PDEK 243 (1424)
T ss_pred hhccccccCCC-CCCc
Confidence 55666667777 6554
No 115
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=26.34 E-value=1.8e+03 Score=32.15 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=16.3
Q ss_pred ccCcccccccccCCCccCCCCCCCCC
Q 000243 423 MSSPFRDTVQDDSGRRDIDYGPGGRQ 448 (1800)
Q Consensus 423 v~s~~r~~v~dd~g~RD~GyG~~ggQ 448 (1800)
|+.-.+++.+-..+.|+.-.|+||=.
T Consensus 308 VSeeakdLI~~ll~~~e~RLgrngie 333 (1317)
T KOG0612|consen 308 VSEEAKDLIEALLCDREVRLGRNGIE 333 (1317)
T ss_pred cCHHHHHHHHHHhcChhhhcccccHH
Confidence 45555666666666777667776643
No 116
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=26.06 E-value=5.1e+02 Score=28.88 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=6.4
Q ss_pred cccCCCCC-CCCCCcc
Q 000243 529 MKDFGSSS-FDGRDPF 543 (1800)
Q Consensus 529 MqDFgSSs-fDgrdpF 543 (1800)
+.+..+|+ .-|-..|
T Consensus 23 V~NV~GSSAGAGSGeF 38 (142)
T PF06658_consen 23 VRNVQGSSAGAGSGEF 38 (142)
T ss_pred eccccccccccCccHH
Confidence 34444444 4454444
No 117
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=24.93 E-value=1.6e+03 Score=29.12 Aligned_cols=13 Identities=8% Similarity=0.284 Sum_probs=6.5
Q ss_pred cccccccccccCc
Q 000243 475 YNRFRGDAFQRSS 487 (1800)
Q Consensus 475 ynr~rgdsfQnss 487 (1800)
+-+++|.++++..
T Consensus 40 ~sP~~~e~l~~rv 52 (552)
T KOG2129|consen 40 FSPSPGESLGARV 52 (552)
T ss_pred CCCCCHHHHHHHH
Confidence 3445555555443
No 118
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=23.65 E-value=3.4e+02 Score=35.47 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=4.9
Q ss_pred CCccccccc
Q 000243 347 RDSETGKVS 355 (1800)
Q Consensus 347 r~~~~g~~~ 355 (1800)
+|+--|++-
T Consensus 254 ~Da~gG~ah 262 (591)
T KOG2505|consen 254 HDAGGGAAH 262 (591)
T ss_pred hhccCCccc
Confidence 555555544
No 119
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=23.06 E-value=3.9e+02 Score=34.05 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=5.1
Q ss_pred Ccccccccc
Q 000243 471 GSEQYNRFR 479 (1800)
Q Consensus 471 gi~qynr~r 479 (1800)
+..||-+|.
T Consensus 170 a~s~YIryt 178 (506)
T KOG2441|consen 170 ADSQYIRYT 178 (506)
T ss_pred CCcceeeec
Confidence 445666665
No 120
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.41 E-value=1.5e+03 Score=27.58 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred cccccCCCCCCCCCCcchhhHHHHHHhhhhhhhcccccCchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000243 527 PFMKDFGSSSFDGRDPFSAGLVGVVKKKKDVLKQTDFHDPVRESFEAEL---ERVQKMQEQERQRIIEEQERALELARRE 603 (1800)
Q Consensus 527 p~MqDFgSSsfDgrdpFa~~lla~mKKKKEelKqaE~edqeREElEaEL---ErkrreeEEERrRkEEErKRreEEeRRE 603 (1800)
|.+..|.+++.+.+ ..|+.+-.-.|.-........-++.+. +..+...++......+..+.-.+...+.
T Consensus 104 pLf~EY~~a~~d~r--------~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l 175 (325)
T PF08317_consen 104 PLFREYYTADPDMR--------LLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQL 175 (325)
T ss_pred HHHHHHHcCCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000243 604 EEERLRVAREQEEQRRRLEEETREAV--WRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAK 681 (1800)
Q Consensus 604 EEERERkeREEEEErRReEEEeRErE--ErEEEERlEaERRaEEERKRkEEEeRRreEEEERRKEEEEerRkEeEEEeKK 681 (1800)
.+-..+......+-+.+....+.... .....+.+++.+.+-......-++.++...+-+...++-+.+..+..+++.+
T Consensus 176 ~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~ 255 (325)
T PF08317_consen 176 DELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE 255 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhcc
Q 000243 682 RQAEAAKSDS 691 (1800)
Q Consensus 682 rqaEkEK~rr 691 (1800)
.+.+.....+
T Consensus 256 l~~eI~e~~~ 265 (325)
T PF08317_consen 256 LLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHH
No 121
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.19 E-value=1.5e+03 Score=27.30 Aligned_cols=142 Identities=21% Similarity=0.169 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000243 568 RESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQR 647 (1800)
Q Consensus 568 REElEaELErkrreeEEERrRkEEErKRreEEeRREEEERERkeREEEEErRReEEEeRErEErEEEERlEaERRaEEER 647 (1800)
+..-..+.-++.+.+-+...+..+..+.+.+..+.+-..-+...++..++..+.++.........+...+..+....+++
T Consensus 25 ~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r 104 (239)
T COG1579 25 RIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKER 104 (239)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhccccccchhccc
Q 000243 648 IAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEKSSGLAKERD 709 (1800)
Q Consensus 648 KRkEEEeRRreEEEERRKEEEEerRkEeEEEeKKrqaEkEK~rrEAEakaeEKasaivkEKd 709 (1800)
....+.+-....++....+.+.....+.-.+....-.+.+.....+-+...+.......++.
T Consensus 105 ~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~ 166 (239)
T COG1579 105 INSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKRE 166 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 122
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=21.12 E-value=1.9e+03 Score=28.59 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=6.7
Q ss_pred cCCCCCCCCCCcc
Q 000243 531 DFGSSSFDGRDPF 543 (1800)
Q Consensus 531 DFgSSsfDgrdpF 543 (1800)
+.-+++++..-|.
T Consensus 124 ~i~~~qt~~d~Pl 136 (447)
T KOG2751|consen 124 DILSSQTQVDHPL 136 (447)
T ss_pred HHhhccCCcccch
Confidence 4444555555555
No 123
>PF07415 Herpes_LMP2: Gammaherpesvirus latent membrane protein (LMP2) protein; InterPro: IPR010881 This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) is a human gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear [].; GO: 0019042 latent virus infection, 0033644 host cell membrane; PDB: 2JO9_B 1UXW_C.
Probab=20.60 E-value=34 Score=42.00 Aligned_cols=42 Identities=33% Similarity=0.553 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 000243 92 SSGSNGGPAGGGVSGAGQRPGSSGTGWTKPGTAVGSDQKIND 133 (1800)
Q Consensus 92 ~~~~~~~~~~~~~~g~g~~p~~sg~gw~kp~~~~~~~~~~~~ 133 (1800)
.-+++|||-|+-|+++-.-|++.|.-|..|+.+..++.+.++
T Consensus 13 ~p~~~~~~dg~e~~~~~~~ps~~~~~~~~~~~p~~~d~~~~~ 54 (489)
T PF07415_consen 13 PPSPHGGPDGYEGSNNSQYPSSFGSSWNSPGPPNYEDYPSNS 54 (489)
T ss_dssp ------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccCCCCC
Confidence 345677888888999999999999999999998888887764
No 124
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=20.49 E-value=2e+03 Score=28.44 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=7.2
Q ss_pred cccccCCCCcccc
Q 000243 772 RDAFESGNSSTFI 784 (1800)
Q Consensus 772 Rd~~lrd~SSaFl 784 (1800)
+|-+-+++....|
T Consensus 187 sdtlatgg~Dr~I 199 (459)
T KOG0288|consen 187 SDTLATGGSDRII 199 (459)
T ss_pred cchhhhcchhhhh
Confidence 4555555655555
No 125
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=20.32 E-value=1.1e+03 Score=25.24 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000243 589 IIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAA 668 (1800)
Q Consensus 589 kEEErKRreEEeRREEEERERkeREEEEErRReEEEeRErEErEEEERlEaERRaEEERKRkEEEeRRreEEEERRKEEE 668 (1800)
..+.+..-.......++.+.+.....++-+++..+.+.++.+..++.+.++++..++.....+++..+..++.+...+.+
T Consensus 24 l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e 103 (147)
T TIGR01144 24 IETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAE 103 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 000243 669 KQKLLELEERIAKRQA 684 (1800)
Q Consensus 669 EerRkEeEEEeKKrqa 684 (1800)
+.+...+-........
T Consensus 104 ~~~a~~~l~~~~~~lA 119 (147)
T TIGR01144 104 KEQAREELRKQVADLS 119 (147)
T ss_pred HHHHHHHHHHHHHHHH
No 126
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=20.25 E-value=1.1e+03 Score=25.56 Aligned_cols=96 Identities=18% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000243 589 IIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAA 668 (1800)
Q Consensus 589 kEEErKRreEEeRREEEERERkeREEEEErRReEEEeRErEErEEEERlEaERRaEEERKRkEEEeRRreEEEERRKEEE 668 (1800)
..+.++.-.......++.+++.+...++-+.+.+..+.++.+.....+.++++..++.+...+++..+.....+...+.+
T Consensus 31 l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~e 110 (159)
T PRK09173 31 LDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQA 110 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 000243 669 KQKLLELEERIAKRQA 684 (1800)
Q Consensus 669 EerRkEeEEEeKKrqa 684 (1800)
+++...+-......-.
T Consensus 111 k~~a~~el~~~~~~lA 126 (159)
T PRK09173 111 ETDAINAVRSSAVDLA 126 (159)
T ss_pred HHHHHHHHHHHHHHHH
Done!