Query 000243
Match_columns 1800
No_of_seqs 430 out of 1558
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 15:56:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000243.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_23-27//hhsearch_pdb/000243hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i1j_A Moesin; FERM, coiled-co 1.0 1 1 41.3 6.1 160 544-703 302-462 (575)
2 3vkg_A Dynein heavy chain, cyt 1.0 1 1 36.6 15.6 15 1194-1212 2675-2692(3245)
3 3h8d_A Myosin-VI; myosin VI, m 1.0 1 1 36.4 -1.1 57 839-895 34-127 (141)
4 3vkg_A Dynein heavy chain, cyt 1.0 1 1 30.7 17.7 16 1196-1211 2705-2720(3245)
5 1i84_S Smooth muscle myosin he 1.0 1 1 26.8 10.6 23 152-174 266-288 (1184)
6 2zuo_A MVP, major vault protei 1.0 1 1 23.3 18.5 12 150-161 146-157 (861)
7 2vgp_C Inner centromere protei 1.0 1 1 21.1 -4.3 37 767-810 1-37 (43)
8 1f5n_A Interferon-induced guan 1.0 1 1 20.8 18.0 123 570-694 456-584 (592)
9 3oja_A Leucine-rich immune mol 1.0 1 1 20.7 16.6 122 565-686 352-485 (487)
10 2b5u_A Colicin E3; high resolu 1.0 1 1 20.5 17.8 115 576-690 294-452 (551)
No 1
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=1.00 E-value=1 Score=41.31 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 03378999852232200124573145799999999999999999999999999999999999999999999999999999
Q 000243 544 SAGLVGVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEE 623 (1800)
Q Consensus 544 a~~ila~iKKKKEelKqae~edqeREElEaELErkkKeeEEERkRkEEEkKRkeEEeRREEEERERkeREEEEEkRReEE 623 (1800)
+..+-+.+|..+...+.....-..-.+...+.++.+...++.....+++.++..++..+.++....++.+....+...+.
T Consensus 302 ~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~ 381 (575)
T 2i1j_A 302 VQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEE 381 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998888888899999888899999999984899999999999999999999998699999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCC
Q ss_conf -9999999999999999999999999999999999999999999999999999999999999999840033110001121
Q 000243 624 -ETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEKSS 702 (1800)
Q Consensus 624 -EeKEreEKEEeERlEaERRaEEERKRkEEEKRRreEEEERRKEEEEkKRkEEEEKkKkrQaEkEKqrrEAEakaeEKas 702 (1800)
+.+..+..++..+++......++.+..-+.+.+..+.+-.+..++..++.++..+...+..++....+++++...+...
T Consensus 382 l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~~ 461 (575)
T 2i1j_A 382 LEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATT 461 (575)
T ss_dssp ------------------------------------------------------------CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99879999999999999888679999999998999889999999999877888999999999999999999999998505
Q ss_pred C
Q ss_conf 0
Q 000243 703 G 703 (1800)
Q Consensus 703 a 703 (1800)
.
T Consensus 462 ~ 462 (575)
T 2i1j_A 462 P 462 (575)
T ss_dssp C
T ss_pred C
T ss_conf 7
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=36.55 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=8.4
Q ss_pred CCCCCCCCHHH---HHHHHHHH
Q ss_conf 32378875034---65788875
Q 000243 1194 LSIGSSSGILQ---ETDKAIQD 1212 (1800)
Q Consensus 1194 ~~~~~s~~~~~---e~eka~q~ 1212 (1800)
+|++ -.| -|+++|..
T Consensus 2675 iSLG----qgQg~~~A~~~i~~ 2692 (3245)
T 3vkg_A 2675 FAIG----SPEGFELAEKSIYA 2692 (3245)
T ss_dssp CBTT----SHHHHHHHHHHHHH
T ss_pred EECC----CCCCHHHHHHHHHH
T ss_conf 9789----98558999999999
No 3
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=1.00 E-value=1 Score=36.45 Aligned_cols=57 Identities=23% Similarity=0.384 Sum_probs=39.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------------------------CCCCCCCCCCCCCCCC
Q ss_conf 3478553368999534452115310224------------------------------------0001387313468899
Q 000243 839 SRGQRWNMSGDGDHYGRNIEMESDFHEN------------------------------------ITERYGDVGWGQGRYR 882 (1800)
Q Consensus 839 ~r~qRWnapgDGd~igRq~EIdSeq~EN------------------------------------igErfgd~gW~~ssS~ 882 (1800)
.+..+|++||||+|+.||+|+|+++..- +|+++|+.-|.....+
T Consensus 34 ~k~G~WYAHFdGqwIaRQmElhP~K~PiLLvAG~DDm~MCELsLeeTgLtRKkGAEIl~~eFe~~W~~~GG~~y~~~a~~ 113 (141)
T 3h8d_A 34 KKKGWWYAHFDGPWIARQMELHPDKPPILLVAGKDDMEMCELNLEETGLTRKRGAEILPRQFEEIWERCGGIQYLQSAIE 113 (141)
T ss_dssp CCEEEEEEEEETTEEEEEEEECSSSCCEEEETTTTTTTSCCSCHHHHTGGGSTTTEECHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHEEEEECCCCCCEEEECCCCHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCC
T ss_conf 64646999607735321336679999768862753587753305551444568642179999999998499432330533
Q ss_pred CC-CCCCCCCCCCC
Q ss_conf 99-99999986688
Q 000243 883 GN-VHPPYPDRIYP 895 (1800)
Q Consensus 883 ~r-PfPP~peRmyq 895 (1800)
.. +.|.|+..|.|
T Consensus 114 ~~~a~pt~a~a~~~ 127 (141)
T 3h8d_A 114 SRQARPTYATAMLQ 127 (141)
T ss_dssp TTCSCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHH
T ss_conf 23479867999999
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=30.73 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=5.6
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 3788750346578887
Q 000243 1196 IGSSSGILQETDKAIQ 1211 (1800)
Q Consensus 1196 ~~~s~~~~~e~eka~q 1211 (1800)
+|=+-....+-||-+.
T Consensus 2705 cHL~~sWl~~LEk~le 2720 (3245)
T 3vkg_A 2705 IHLAPQWLVQLEKKLH 2720 (3245)
T ss_dssp GGGCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 0314768999999997
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=26.79 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64345998776788878667885
Q 000243 152 VGVYVPPSVRSGTVGPALSSFAP 174 (1800)
Q Consensus 152 ~~~~~~~s~~~~~~~~~~~~~~~ 174 (1800)
-..|+---.||-...+.++.||.
T Consensus 266 i~~ylLEksRv~~q~~~Ernfhi 288 (1184)
T 1i84_S 266 IETYLLEKSRAIRQAKDERTFHI 288 (1184)
T ss_dssp EEECCCCCGGGSCCCTTCCCCTH
T ss_pred EEEEECCCCEEEEECCCCCCHHH
T ss_conf 76730577545523699885045
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=1.00 E-value=1 Score=23.29 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCC
Q ss_conf 886434599877
Q 000243 150 DGVGVYVPPSVR 161 (1800)
Q Consensus 150 ~~~~~~~~~s~~ 161 (1800)
.++|.|.|..--
T Consensus 146 ~gPGtY~P~veE 157 (861)
T 2zuo_A 146 EGPGTYIPQKEV 157 (861)
T ss_dssp CSSCCCCSSSCC
T ss_pred ECCCEECCCCCE
T ss_conf 777202599726
No 7
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=1.00 E-value=1 Score=21.05 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88777665468997642222212699999878888787888644
Q 000243 767 FNSWRRDAFESGNSSTFITQDAENGHYSPRRDSAFGGRAVPRKE 810 (1800)
Q Consensus 767 ~nSWrRd~~lr~~SSaFipqd~eNG~~sP~~ds~~g~R~fprle 810 (1800)
+++|+....+++. |.+++ +++|+.|..||....|+++
T Consensus 1 IP~WA~~~~L~~~----l~~Q~---~~p~D~d~iFG~I~pp~Le 37 (43)
T 2vgp_C 1 IPAWASGNLLTQA----IRQQY---YKPIDVDRMYGTIDSPKLE 37 (43)
T ss_dssp CCGGGSHHHHHHH----HHHHH---HSCCCHHHHTTTSCCCCHH
T ss_pred CCCCCCHHHHHHH----HHHHH---CCCCCHHHHCCCCCCCCHH
T ss_conf 9753045899999----99987---1599989986898995899
No 8
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=1.00 E-value=1 Score=20.81 Aligned_cols=123 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999999999999------9999999999999999999999999999999999999999999999999999
Q 000243 570 SFEAELERVQKMQEQERQRIIE------EQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKA 643 (1800)
Q Consensus 570 ElEaELErkkKeeEEERkRkEE------EkKRkeEEeRREEEERERkeREEEEEkRReEEEeKEreEKEEeERlEaERRa 643 (1800)
+.++-++.-.+..+........ +.+++.++++.+.+..++.++..++.++..+.--+..++.-++.-.....+.
T Consensus 456 ~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~km 535 (592)
T 1f5n_A 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535 (592)
T ss_dssp THHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48999999999889899999998898889899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999999999999999999999999999999998400331
Q 000243 644 EEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSS 694 (1800)
Q Consensus 644 EEERKRkEEEKRRreEEEERRKEEEEkKRkEEEEKkKkrQaEkEKqrrEAE 694 (1800)
|++|+...++.++. -+.+.+++++..+..-+++.+..+.|+....+...
T Consensus 536 e~~~~~~~~e~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 536 ENDRVQLLKEQERT--LALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMR 584 (592)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999--99999999999999999999999999999998622
No 9
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=20.73 Aligned_cols=122 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 731457999999999999999999999999999999999999999999------------99999999999999999999
Q 000243 565 DPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAR------------EQEEQRRRLEEETREAVWRA 632 (1800)
Q Consensus 565 dqeREElEaELErkkKeeEEERkRkEEEkKRkeEEeRREEEERERkeR------------EEEEEkRReEEEeKEreEKE 632 (1800)
.......+++....++++.+-.+...+.++...+...+.++...+.+. .....++.++...+...+++
T Consensus 352 ~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (487)
T 3oja_A 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431 (487)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88889999888999888999999999888887641126877501021000221357289999999999998899998750
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999999999999999999
Q 000243 633 EQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEA 686 (1800)
Q Consensus 633 EeERlEaERRaEEERKRkEEEKRRreEEEERRKEEEEkKRkEEEEKkKkrQaEk 686 (1800)
..++.....+.+.++.+++.++.+...++-..+.++..+..+..-.++.--++.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 301335554347788887765455311044445674543799999999988875
No 10
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=1.00 E-value=1 Score=20.46 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999---------------
Q 000243 576 ERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEAT--------------- 640 (1800)
Q Consensus 576 ErkkKeeEEERkRkEEEkKRkeEEeRREEEERERkeREEEEEkRReEEEeKEreEKEEeERlEaE--------------- 640 (1800)
.+.++++|||.++++++..+..++..+.+.|+.+.+..++++.-....|+.....+.-..+..+-
T Consensus 294 ~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~ 373 (551)
T 2b5u_A 294 DQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIK 373 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88888889988777776540707899999999999999998888888888777888877667777766667778887566
Q ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf ------------------------999999999999999999999999999-----99999999999999999999840
Q 000243 641 ------------------------RKAEEQRIAREEERQRIIMEEERRKHA-----AKQKLLELEERIAKRQAEAAKSD 690 (1800)
Q Consensus 641 ------------------------RRaEEERKRkEEEKRRreEEEERRKEE-----EEkKRkEEEEKkKkrQaEkEKqr 690 (1800)
+++.++-...++.--....|.-....+ +.+++.|.+++.++.+++.++..
T Consensus 374 ~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~k~ae~kl~~e~~k 452 (551)
T 2b5u_A 374 QFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNK 452 (551)
T ss_dssp HHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHCCCHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHC
T ss_conf 5443166701145104433220022224456668889998751114305454044431555355666666300355537
Done!