Query 000243
Match_columns 1800
No_of_seqs 430 out of 1558
Neff 3.4
Searched_HMMs 13730
Date Tue Mar 26 16:05:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000243.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_23-27//hhsearch_scop/000243hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3e7ma1 d.174.1.1 (A:77-497) N 2.7 1.5E+02 0.011 1.6 1.3 21 1010-1030 383-405 (421)
2 d1q2oa_ d.174.1.1 (A:) Nitric 2.6 1.5E+02 0.011 1.6 1.3 30 1000-1031 377-408 (416)
3 d1e8qa_ g.55.1.1 (A:) Cellulos 2.2 1.4E+02 0.01 1.8 -0.6 17 1067-1083 20-36 (46)
4 d1om4a_ d.174.1.1 (A:) Nitric 2.0 2.1E+02 0.015 0.6 1.8 82 1097-1178 186-280 (418)
5 d1g0da1 b.1.18.9 (A:6-140) Tra 1.9 2.2E+02 0.016 0.4 0.5 40 1005-1044 89-128 (135)
6 d1hyoa1 b.34.8.1 (A:1-118) Fum 1.9 2.3E+02 0.017 0.3 1.0 37 1263-1300 1-37 (118)
7 d2npta1 d.15.2.2 (A:4-108) Mit 1.9 2.3E+02 0.017 0.3 0.4 7 1090-1097 58-64 (105)
8 d1st6a3 a.24.9.1 (A:253-371) V 1.9 2.2E+02 0.016 0.4 -0.1 16 1072-1087 1-16 (119)
9 d1uala_ c.116.1.4 (A:) tRNA(m1 1.6 2.7E+02 0.02 -0.3 1.1 8 50-57 57-64 (252)
10 d1m7va_ d.174.1.1 (A:) Nitric 1.6 2.7E+02 0.02 -0.3 2.1 53 1097-1149 135-190 (363)
No 1
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.65 E-value=1.5e+02 Score=1.61 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=10.2
Q ss_pred CCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 79999--9877875335569987
Q 000243 1010 SAPDS--PVHLSHDDLDVSGDSP 1030 (1800)
Q Consensus 1010 spp~s--p~h~shdd~d~sgds~ 1030 (1800)
-||-| -+|+=|-+|+.---+|
T Consensus 383 vPP~Sgs~TpvfH~~~~n~~l~P 405 (421)
T d3e7ma1 383 VPPVSGSITPVFHQEMLNYVLSP 405 (421)
T ss_dssp SCSSSGGGSGGGGBCCCCCCCSS
T ss_pred CCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 78886434416766543354588
No 2
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.62 E-value=1.5e+02 Score=1.57 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=14.8
Q ss_pred CCCCCCEEECCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 688861010179999--98778753355699875
Q 000243 1000 CDSQSSLSVSSAPDS--PVHLSHDDLDVSGDSPA 1031 (1800)
Q Consensus 1000 ~~sqsslsvsspp~s--p~h~shdd~d~sgds~~ 1031 (1800)
|-..=+ ---||-| -+|+=|-+||.---+|.
T Consensus 377 ~pgdW~--WlvPP~S~s~TpvfH~~~~n~~l~P~ 408 (416)
T d1q2oa_ 377 CPADWA--WIVPPISGSLTPVFHQEMVNYILSPA 408 (416)
T ss_dssp CBCCHH--HHSCSSSGGGSGGGGBCCBBCBCSSE
T ss_pred CCCCCE--EECCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 998852--77788875454167666550345888
No 3
>d1e8qa_ g.55.1.1 (A:) Cellulose docking domain, dockering {Piromyces equi [TaxId: 99929]}
Probab=2.19 E-value=1.4e+02 Score=1.81 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCCCHH
Q ss_conf 67767897620231216
Q 000243 1067 SSISAGDDEEWAVENDE 1083 (1800)
Q Consensus 1067 ~~~s~~dd~ew~~~~~e 1083 (1800)
-++-+.+|-.|-+||++
T Consensus 20 ~V~ytD~dG~WGVENg~ 36 (46)
T d1e8qa_ 20 KVEYTDASGQWGVQNGQ 36 (46)
T ss_dssp CEEEEETTEEEEEETTE
T ss_pred EEEEECCCCCCCCCCCE
T ss_conf 69996589865248780
No 4
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.02 E-value=2.1e+02 Score=0.55 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCCCCCC-CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEEECCCC------------EECCCCCCCCCCCCCCCCCCCC
Q ss_conf 8754567-88886565410000022222359987434415521664------------0015999623469888888544
Q 000243 1097 GYQEEDV-PEGDDENIELTQEFEGIHLEEKGSPHMMSNLVLGFNEG------------VEVPMPNDDFERSPQNEDTTLA 1163 (1800)
Q Consensus 1097 ~y~eed~-~~~~den~~l~~~~~~~hl~~k~~p~~~~~~vlgf~eg------------v~v~mp~d~fer~~~n~~~~~~ 1163 (1800)
||+++|- |-|+--|+++|+..+.+--.-++++--+=||||--+.. .||.|---+|+--..-.=--+.
T Consensus 186 GY~~~dGsiiGDPa~vefT~~c~~lGW~~~~t~FDvLPLviq~~g~~p~~feiP~elvlEV~i~HP~~~wf~~LgLkWya 265 (418)
T d1om4a_ 186 GYKQPDGSTLGDPANVQFTEICIQQGWKAPRGRFDVLPLLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGLKWYG 265 (418)
T ss_dssp EEECTTSCEEECGGGHHHHHHHHTTTCCCCCCTTCBCCEEEECTTCCCEEECCCGGGCCEEECCCSSCTTGGGGCCEEES
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEECCHHHEEEECCCCCCCHHHHHCCCCEEE
T ss_conf 65689987647831379999999768989999877020899978999725748877824643559897547755983762
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 533567633467865
Q 000243 1164 PQISAGTVVEDQGSL 1178 (1800)
Q Consensus 1164 ~~~~~~~~~~~~~~~ 1178 (1800)
+|.+|.-.-+.+|++
T Consensus 266 vPaiSnM~L~iGGi~ 280 (418)
T d1om4a_ 266 LPAVSNMLLEIGGLE 280 (418)
T ss_dssp CCCBCSCEEEETTEE
T ss_pred CCHHCCCEEEECCEE
T ss_conf 501136523208885
No 5
>d1g0da1 b.1.18.9 (A:6-140) Transglutaminase N-terminal domain {Red sea bream (Chrysophrys major) [TaxId: 143350]}
Probab=1.95 E-value=2.2e+02 Score=0.40 Aligned_cols=40 Identities=8% Similarity=0.005 Sum_probs=0.0
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1010179999987787533556998754432124564224
Q 000243 1005 SLSVSSAPDSPVHLSHDDLDVSGDSPALSAAEEDKDAVLS 1044 (1800)
Q Consensus 1005 slsvsspp~sp~h~shdd~d~sgds~~l~~~~~~~~~~~~ 1044 (1800)
+|||.|||+.|+-.-+=.++.+.+..-..+.....+..|+
T Consensus 89 ~vsV~spa~A~VG~y~L~v~~~~~~~~~~~~~~~~~~ylL 128 (135)
T d1g0da1 89 LLTLHSPANAVIGHYRLAVLVMSPDGHIVERADKISFHML 128 (135)
T ss_dssp EEEEECCTTCCCEEEEEEEEEECTTSCEEEECCCEEEEEE
T ss_pred EEEEECCCCCEEEEEEEEEEEEECCCCEEECCCCCCEEEE
T ss_conf 9999689997077889999998369840100589989999
No 6
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.90 E-value=2.3e+02 Score=0.30 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEC
Q ss_conf 00111258887643578620234898898988630012
Q 000243 1263 MSTVTVGLSQAETPVKLQFGLFSGPSLIPSPFPAIQIG 1300 (1800)
Q Consensus 1263 ~~~v~~~~~~~e~pv~lqfglfsgpslipsp~paiqig 1300 (1800)
||=|.+..+..=-.-+|-||.||-+. =|+|-+++-||
T Consensus 1 ~Swv~~a~dsdFpiqNLPfGVfs~~~-~~~pR~gvaIG 37 (118)
T d1hyoa1 1 MSFIPVAEDSDFPIQNLPYGVFSTQS-NPKPRIGVAIG 37 (118)
T ss_dssp CCSSCCCTTCSCCTTTCCEEEEECSS-CCSCEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCC-CCCCEEEEEEC
T ss_conf 94046789999886568738887489-99832457678
No 7
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.90 E-value=2.3e+02 Score=0.30 Aligned_cols=7 Identities=100% Similarity=1.645 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q ss_conf 13546678
Q 000243 1090 EYDEDEDG 1097 (1800)
Q Consensus 1090 eyded~~~ 1097 (1800)
|| |||||
T Consensus 58 EY-EDEdG 64 (105)
T d2npta1 58 EY-EDEDG 64 (105)
T ss_dssp EE-ECTTS
T ss_pred EE-CCCCC
T ss_conf 30-25658
No 8
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=1.85 E-value=2.2e+02 Score=0.41 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHH
Q ss_conf 8976202312166542
Q 000243 1072 GDDEEWAVENDERLHE 1087 (1800)
Q Consensus 1072 ~dd~ew~~~~~e~~q~ 1087 (1800)
+|+|||..+|-+.+++
T Consensus 1 ~Ded~~~~~~~~~mkk 16 (119)
T d1st6a3 1 WDEDAWASKDTEAMKR 16 (119)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred CCHHHHCCCHHHHHHH
T ss_conf 9602210121999998
No 9
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=1.64 E-value=2.7e+02 Score=-0.27 Aligned_cols=8 Identities=75% Similarity=1.444 Sum_probs=0.0
Q ss_pred CCCCCEEE
Q ss_conf 88984289
Q 000243 50 GGGGGMLV 57 (1800)
Q Consensus 50 ~~~ggm~v 57 (1800)
|||.|||+
T Consensus 57 GGGpGMVm 64 (252)
T d1uala_ 57 GGGPGMLM 64 (252)
T ss_dssp TCCSCCEE
T ss_pred CCCCCCEE
T ss_conf 89986304
No 10
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]}
Probab=1.62 E-value=2.7e+02 Score=-0.31 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEEECC-CC--EECCCCCC
Q ss_conf 8754567888865654100000222223599874344155216-64--00159996
Q 000243 1097 GYQEEDVPEGDDENIELTQEFEGIHLEEKGSPHMMSNLVLGFN-EG--VEVPMPND 1149 (1800)
Q Consensus 1097 ~y~eed~~~~~den~~l~~~~~~~hl~~k~~p~~~~~~vlgf~-eg--v~v~mp~d 1149 (1800)
||+....|-|+--|+++|+..+.+--.-|+++--+=|||+--| +. +-.++|.|
T Consensus 135 GY~~dg~iiGDP~~vefT~~c~~lGW~~~~t~FDvLPlviq~~g~~~P~~feiP~~ 190 (363)
T d1m7va_ 135 GYESDGERIGDPASRSLTAACEQLGWRGERTDFDLLPLIFRMRGDEQPVWYELPRS 190 (363)
T ss_dssp EEC--CCCEECGGGHHHHHHHHTTTCCCCCCTTCBCCEEEEETTCSSCEEECCCTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCEEECCCHH
T ss_conf 75889983689526899999997599998998884038999679999813318877
Done!