BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000244
(1799 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5VU65|P210L_HUMAN Nuclear pore membrane glycoprotein 210-like OS=Homo sapiens
GN=NUP210L PE=2 SV=1
Length = 1888
Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 350/1536 (22%), Positives = 631/1536 (41%), Gaps = 248/1536 (16%)
Query: 40 ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSIL-LTVAEAMSIEPPSPVFVL 98
E+E D+ +V GI G +V V + E + +A +++ L V E + + P +++L
Sbjct: 206 EMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKKVAAALIRLLVLENIFLIPSHDIYLL 265
Query: 99 VGAALQYKL-KVIRGNIPQVVALPSPH-------HRWSVSNS---SVAQVDNMMGLTQAL 147
VG ++Y++ K+++G + +V P H HR +++ S VA +D+ + A
Sbjct: 266 VGTYIKYQVAKMVQGRVTEV-KFPLEHYILELQDHRVALNGSHSEKVAILDDKTAMVTAS 324
Query: 148 RLGQTAVI-----VEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVA 202
+LGQT ++ V V+G ++ VV P L + P G+
Sbjct: 325 QLGQTNLVFVHKNVHMRSVSGLPN-CTIYVVEPGFLGFTVQP----GN------------ 367
Query: 203 RWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPND-----LVL 257
RW + G Y+I + VF + S ++YI SD++++ T+ P + L
Sbjct: 368 RWSLEVGQVYVITVDVFDKS--STKVYI--SDNLRI---------TYDFPKEYFEEQLTT 414
Query: 258 KHGWRNSRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQT 313
+G + I+KA G+ + ASLT + K ++K QE+ +I F + T
Sbjct: 415 VNG--SYHIVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEV----KIYFPIMLT 468
Query: 314 NGVSESILLPWAP-GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKK-PG 371
+ + P P G+ ++ GG S ++ W SS+ V +T GVV A + G
Sbjct: 469 ---PKFLAFPHHPMGMLYRYKVQVEGG----SGNFTWTSSNETVVIVTTKGVVTAGQVRG 521
Query: 372 KATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLN-----G 426
+TV + + F Y EI I V + M +L F + +G ++ + M +N
Sbjct: 522 NSTVLARDVQNPFRYGEIKIHVLKLNKMELL-PFHADVEIGQIIEIPIAMYHINKETKEA 580
Query: 427 AYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGT---VEHDISLHGPP-CSWAHL 482
F C S +N +DK G ++ I GP CS H+
Sbjct: 581 MAFTDCSHLSLDLN-------------------MDKQGVFTLLKEGIQRPGPMHCSSTHI 621
Query: 483 YASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFN 542
A S G T++ ++++ ++ L++S+ AAY PL
Sbjct: 622 AAKSLGHTLVTVSVNECDKY----------LESSATFAAYEPL----------------- 654
Query: 543 LGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPW--EEDVDFIETFEIFNGKHNHASDG 600
+ ++ + ++ +++ GGP PW E F+E N +
Sbjct: 655 -------KALNPVEVALVTWQSVKEMVFEGGPRPWILEPSRFFLE----LNAEKTEKIGI 703
Query: 601 VHIHVVSGSSKN--LYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASI 658
+ + S +N +Y + C LG L F+ GN G +P PAV + + C+ PAS+
Sbjct: 704 AQVWLPSKRKQNQYIYRIQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASM 763
Query: 659 ALLVDEPVNERKVIQTAAQADRSPGRIR-VTPVTVANGQTIRIAAVGISSSGEAFANSSS 717
++ PV + + AQ P + + PV+ + +A F N SS
Sbjct: 764 SV---TPVYK---VPAGAQPCPLPQHNKWLIPVSRLRDTVLELAV--FDQHRRKFDNFSS 815
Query: 718 LCLGWELSNCDGLAYWDDAY---------GSQKSASSWERFLVLQNESGLCVVRATASGF 768
L L W+ SN + LA+++D GS ++ + L + G ++ G+
Sbjct: 816 LMLEWKSSN-ETLAHFEDYKSVEMVAKDDGSGQTRLHGHQILKVHQIKGTVLIGVNFVGY 874
Query: 769 CDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFL 828
+ K EIS + V L LV + V PE ++ +PD K S+ GS +
Sbjct: 875 SEKKSPK------EISNLPRSVDVELLLVDDVTVVPENATIYNHPDVKETFSLVEGSGYF 928
Query: 829 EAAVNDS-QVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD 887
VN S Q V I E ++L+ P G + VYD+ LA A+A ++V+D+
Sbjct: 929 --LVNSSEQGVVTITYMEAESSVELV--PLHPGFFTLEVYDLCLAFLGPATAHLRVSDIQ 984
Query: 888 WIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTY---MDIRVHIEDHIVELIDDD 944
+++ +++ + + ++ ++ GS+ FQ Y M++++ + IV L +
Sbjct: 985 ELELDLIDKVEIDKTVLVTVRVL-----GSSKRPFQNKYFRNMELKLQLASAIVTLTPME 1039
Query: 945 ATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIF 1004
Y + A +G TTL A+ + G + S P +EV+ P R+ P +
Sbjct: 1040 QQDEYSENYI------LRATTIGQTTLVAIAKDKMGRKYTSTPRHIEVFPPFRLLPEKMT 1093
Query: 1005 LVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRS---SGQLFAISPGNTTLIATVFGN 1061
L+P + +GGP V ++ +++ +A ++R +G++ + + T+
Sbjct: 1094 LIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTAVVHGTIQTVNEDT 1153
Query: 1062 GDVVI-CQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPL--FPEGDVFSFYELC--RN 1116
G V++ Q ++V +V + A + +L +MP++ + FSF
Sbjct: 1154 GKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQTPFSFSNANPGLT 1213
Query: 1117 YNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTD 1176
++W++ +L HSE LQ E F ++ ++AGRT
Sbjct: 1214 FHWSMSKRDVLDLV---PRHSE-VFLQLPV-------------EHNFAMVVHTKAAGRTS 1256
Query: 1177 VATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSES 1236
+ T C S E + S + ++ L L P L+P +S+
Sbjct: 1257 IKVTVHCMNSSSGQFEGNLLELSDEVQILVFEKLQL------FYPECQPEQILMPINSQL 1310
Query: 1237 HGQWDSQSHKGSIVYSLLKFCSEKNEAASKD-DISIDGDTIKTTSSNHLACIQAKDRSSG 1295
+ + + V S + C + +D + + +I T+ + I+ +
Sbjct: 1311 --KLHTNREGAAFVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQT 1368
Query: 1296 RIEIASCVRVAEVAQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPFHEAHN 1349
I + V+VA V +R+S++ L +G + +Y+++G FH HN
Sbjct: 1369 TI---TGVQVAPVTYLRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFH-THN 1424
Query: 1350 VILYHAETNYHDVVSI-----NYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVS 1404
LY A N D++ I NYT +A G LV + R P +DY+ V+
Sbjct: 1425 TQLYLA-LNRDDLLHIGPGNKNYTYMA------QAVNRGLTLVGLWDRRHPGMADYIPVA 1477
Query: 1405 VGAQLYPQNPVLHVGGSLDFSVEGFSDQ-VSGHWFSDNESVVHVHMPSGKAEAVGIGSTK 1463
V + P + VG + FS S G W +++ + +G A G+
Sbjct: 1478 VEHAIEPDTKLTFVGDIICFSTHLVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAM 1537
Query: 1464 VFFECPSM---KLQTTVTVLSKNIVSIDAPKEVLTN 1496
+F + P + + V S+ ++S D K LTN
Sbjct: 1538 IFHDIPGVVKTYREVVVNASSRLMLSYDL-KTYLTN 1572
>sp|Q9D2F7|P210L_MOUSE Nuclear pore membrane glycoprotein 210-like OS=Mus musculus
GN=Nup210l PE=2 SV=2
Length = 1881
Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 341/1546 (22%), Positives = 622/1546 (40%), Gaps = 240/1546 (15%)
Query: 36 DVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSIL-LTVAEAMSIEPPSP 94
D IE+E D+ +V G+ G +V V + E + +A +++ L V E + + P
Sbjct: 198 DYIIEMEKQERQGDVILVSGMRTGAAVVKVRIYEPFYKKVAAALIRLLVLENIFLIPSHD 257
Query: 95 VFVLVGAALQYKL-KVIRGNIPQVVALPSPH-------HRWS---VSNSSVAQVDNMMGL 143
++LVGA ++Y++ K+++G + +V P H HR + + + SVA +D +
Sbjct: 258 TYLLVGAYIKYRVAKMVQGRMTEV-NFPLEHYTLELQDHRLTNGGLPSKSVALLDEKTAM 316
Query: 144 TQALRLGQTAVI-----VEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAI 198
A++LGQT ++ V V+G S++ VV P L I P
Sbjct: 317 VTAVQLGQTNLVFVHKNVHMRSVSGLPN-STIYVVEPGFLGFSIHP-------------- 361
Query: 199 PSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLK 258
RW + G Y+I ++VF + S +YI SD++K++ S+ + L
Sbjct: 362 --GGRWSLEVGQVYVITVEVFDKS--STRVYI--SDNLKITFQFSKEY----FEEQLSTS 411
Query: 259 HGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSE 318
+G + ++KA G+ + A+LT S L + +I +K +
Sbjct: 412 NG--SYHVVKALKDGVVVINATLT--SSLQERNSSQPKTYQISHQQEVKIYFPIQ--LKP 465
Query: 319 SIL-LPWAP-GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKK-PGKATV 375
S L P P GI + GG S ++ W SS+ +T GVV A + G +T+
Sbjct: 466 SFLAFPHHPLGISNRFTVQVEGG----SGNFTWSSSNETVAMVTTKGVVTAGQVRGNSTI 521
Query: 376 KVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAF 435
+ + +I + V + M +L F + +G ++ + M +N
Sbjct: 522 LARDVQNPSRSGDIKVYVMKLNKMELL-PFQADVEIGQIIEVPIAMYHVN-------TET 573
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++ + S + LN+ K+ F ++ ++H CS H+ A+S G T++ +
Sbjct: 574 KEAIAFTDCSHLPLDLNSDKQGVFTLFKEGIQKPGAMH---CSSVHIAATSPGHTLVTVS 630
Query: 496 LSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEAL 555
++ +H +S+ AAY PL + +
Sbjct: 631 VTGHEEH----------AWSSATFAAYEPL------------------------KALNPV 656
Query: 556 DKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKN--- 612
D + ++ +++ GGP PW +E F ++ + + V +K
Sbjct: 657 DVALVTWQSVKEMVFEGGPHPW-----ILEPSRFFLELSMEKAEAIRVAEVRLPAKRKQN 711
Query: 613 --LYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERK 670
+Y V C LG L F+ GN G +P P+V +V + C+ PAS+ +
Sbjct: 712 QYVYRVLCLELGEQVLTFRIGNHPGVLNPSPSVEKVQVRFICAHPASMLV---------- 761
Query: 671 VIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGIS--------SSGEAFANSSSLCLGW 722
++P + P+ N Q I ++++ S G F N SSL L W
Sbjct: 762 -----TPMYKAPSGTQPCPLPQYNKQLIPVSSLRDSVLELAVFDQHGRKFDNFSSLMLEW 816
Query: 723 ELSNCDGLAYWDDAY---------GSQKSASSWERFLVLQNESGLCVVRATASGFCDAKD 773
+ SN + LA+++D+ GS ++ + L + G ++ +G+ K
Sbjct: 817 KSSN-ETLAHFEDSKSVEMVARDDGSGQTRLHGHQILKVHQMKGTVLIGVNFAGYSGKKS 875
Query: 774 GHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVN 833
IS S + V L LV + V PE ++ +PD K ++ GS + +
Sbjct: 876 PKG------ISNSPRSAGVELILVEDVTVQPENATIYNHPDVKEIFNLVEGSGYFLINSS 929
Query: 834 DSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMS 893
+ +V I E +QL+ P G + VYD+ LA A A ++V+D+ +++
Sbjct: 930 EQDIV-TITYREAESSVQLV--PAHPGFLTLEVYDLCLAYLGPAVAQIRVSDIQELELDL 986
Query: 894 GEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIV--ELIDDDATSSPDG 951
+++ + G++ + + F + + M++R+ + IV L++D S +
Sbjct: 987 IDKVEI--GKTVLVVVRVLGSSKHPFRNKYFRNMEVRLQLASAIVTLRLMEDQDEYSEN- 1043
Query: 952 GYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASY 1011
+ + A +G TTL A + G + S P +EV+ P R+ P + L+
Sbjct: 1044 -------YMLRAVTVGQTTLVAIATDRMGKKFTSAPRHIEVFPPFRLIPEKMTLIATNMM 1096
Query: 1012 MLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG-NGD----VVI 1066
+ +GGP + ++ +++ +A ++R GQ+ S G L T+ N D +V
Sbjct: 1097 QIMSEGGPQPQSIIHFSISNQTVAVVNR-RGQVTGKSVGTAVLHGTIQTVNEDTGKVIVF 1155
Query: 1067 CQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPL--FPEGDVFSFYEL--CRNYNWTIE 1122
Q ++V +V + A + +L EMP++ + FSF ++W++
Sbjct: 1156 SQDEVQIEVVQLQAVRILAAATRLVTATEMPVYVMGVTSTQTPFSFSNASPLLTFHWSMS 1215
Query: 1123 DEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFS 1182
+L HSE LQ A E F ++ ++AGRT + T
Sbjct: 1216 KRDVLDLV---PRHSE-VFLQLPA-------------ENNFAMVVHTKAAGRTTIKVTVR 1258
Query: 1183 CDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTS----LLPSSSESHG 1238
+ S E + S + ++ L L Y + L+P +S+
Sbjct: 1259 SENSSSGQLEGNLLELSDEIQILVFEKLQL----------FYANCQPEQILMPMNSQL-- 1306
Query: 1239 QWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIE 1298
+ + + V S + C + +D G +++ S A ++ +
Sbjct: 1307 KLHTNREGAAFVSSRVLKCFPNSSVIEED----GGGLLRSGSIAGTAVLEVTSIEPFGVN 1362
Query: 1299 IASC--VRVAEVAQIRISNRYP-------LNVIHLAVGAECEIPISYYDALGTPFHEAHN 1349
+ V+VA V +R+S+ YP + +G + +Y+ +G FH HN
Sbjct: 1363 QTTITGVQVAPVTYLRLSS-YPKLYTAQGRTLSAFPLGMSLTFIVEFYNNIGEKFH-THN 1420
Query: 1350 VILYHAETNYHDVVSI-----NYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVS 1404
LY A N D++ I NYT +A G +V + R P +DY+ V+
Sbjct: 1421 TRLYMA-LNRDDLLLIGPGNRNYTYMA------QAVNKGVTVVGLWDQRHPGMADYIPVA 1473
Query: 1405 VGAQLYPQNPVLHVGGSLDFSVEGFSDQVS-GHWFSDNESVVHVHMPSGKAEAVGIGSTK 1463
V + P ++ VG + FS + + G W ++V +G A G+
Sbjct: 1474 VEHAIEPDTKLIFVGDVICFSTQLVNQHGEPGVWMISTNNIVQTDTATGVGVARNPGTAT 1533
Query: 1464 VFFECPSMK---LQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTF 1506
+F P + + V S+ +S D K LTN P T F
Sbjct: 1534 IFHNIPGVVKTFREVVVNASSRLTLSYDL-KTYLTNTPNATAFKLF 1578
>sp|Q8TEM1|PO210_HUMAN Nuclear pore membrane glycoprotein 210 OS=Homo sapiens GN=NUP210 PE=1
SV=3
Length = 1887
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 352/1506 (23%), Positives = 625/1506 (41%), Gaps = 238/1506 (15%)
Query: 40 ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADS-ILLTVAEAMSIEPPSPVFVL 98
E+E + D +V G+ G + + E + ++ + + L + E + + P V+++
Sbjct: 195 EMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLILENILLNPAYDVYLM 254
Query: 99 VGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNS----------SVAQVDNMMGLTQALR 148
VG ++ YK++ IR +++PS + + NS VA + + AL+
Sbjct: 255 VGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPARPVAVLAQDTSMVTALQ 314
Query: 149 LGQTAVIV--EDTRVAGHTQV--SSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARW 204
LGQ+++++ R+ G +++ S++ VV P L + P GD RW
Sbjct: 315 LGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHP----GD------------RW 358
Query: 205 FVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDN-QSECWRTFSMPNDLVLKHGWRN 263
+ +G Y I ++VF + S ++Y+ SD+I++ +E + S + +
Sbjct: 359 VLETGRLYEITIEVFDKF--SNKVYV--SDNIRIETVLPAEFFEVLSSSQN----GSYHR 410
Query: 264 SRILKATSQGL-GKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESIL- 321
R LK + LT+ + G+H + ++ V ++ + + + SIL
Sbjct: 411 IRALKRGQTAIDAALTSVVDQDGGVH--------ILQVPVWNQQEVEIHIPITLYPSILT 462
Query: 322 LPWAP--GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQ-AKKPGKATVKVV 378
PW P G YQ T S ++ W SS ++T GV+ G + ++
Sbjct: 463 FPWQPKTGAYQ-----YTIRAHGGSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAH 517
Query: 379 SIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSS 438
+ + ++ E+ + V P SM VE VG L+ + + L S
Sbjct: 518 DVQNPLHFGEMKVYVIEPHSM-EFAPCQVEARVGQALELPLRISGLMPGGASEVVTLSDC 576
Query: 439 VNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPP----CSWAHLYASSSGRTMLHA 494
++ E V N QP +L PP CS + A + G T
Sbjct: 577 SHFDLAVE---VENQGVFQPLPGRL-----------PPGSEHCSGIRVKAEAQGST---- 618
Query: 495 TLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEA 554
TL Y+H G + L A IAAY PL +A D S LG S+
Sbjct: 619 TLLVSYRH------GHVHLSAKITIAAYLPL---KAVDPSSVA--LVTLGSSK------- 660
Query: 555 LDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLY 614
++L GGP PW +E + F +D + + + + S Y
Sbjct: 661 ------------EMLFEGGPRPW-----ILEPSKFFQNVTAEDTDSIGLALFAPHSSRNY 703
Query: 615 G-----VFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNER 669
V CQ LG + GN +P PAV + C+ P+ + L
Sbjct: 704 QQHWILVTCQALGEQVIALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTL--------- 754
Query: 670 KVIQTAAQADRSPGRIR----VTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWE-- 723
+ T+ Q D S ++ V PV+ + +AA G F N SSL + WE
Sbjct: 755 APVYTSPQLDMSCPLLQQNKQVVPVSSHRNPRLDLAA--YDQEGRRFDNFSSLSIQWEST 812
Query: 724 ---LSNCD-----GLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGH 775
L++ + L DD G QK + LV SG + ATA+G+ ++ H
Sbjct: 813 RPVLASIEPELPMQLVSQDDESG-QKKLHGLQAILV-HEASGTTAITATATGY---QESH 867
Query: 776 -HSAQLLEISESF--LTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAV 832
SA+ + + L+ ++ L LV +RV+PE ++ +P +A L I GS +
Sbjct: 868 LSSARTKQPHDPLVPLSASIELILVEDVRVSPEEVTIYNHPGIQAELRIREGSGYFFLNT 927
Query: 833 NDSQVVEVI-QAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD--WI 889
+ + VV+V Q G+ M+ P G++ + ++D+ L P A A+V V+D+ +I
Sbjct: 928 STADVVKVAYQEARGVA----MVHPLLPGSSTIMIHDLCLVFPAPAKAVVYVSDIQELYI 983
Query: 890 KIMSGEEI-SLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELID-DDATS 947
+++ EI ++ + +DL F + + +MD+++ I+ L+ D+A
Sbjct: 984 RVVDKVEIGKTVKAYVRVLDL-----HKKPFLAKYFPFMDLKLRAASPIITLVALDEALD 1038
Query: 948 SPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVP 1007
+ ++++ F I +G T+L S ++G I S P ++EV+ P R+ P + L+
Sbjct: 1039 N-----YTIT-FLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPPFRLMPRKVTLLI 1092
Query: 1008 GASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG----NGD 1063
GA+ +T +GGP + ++ ++E +A + ++G + ++ GN T+ V G
Sbjct: 1093 GATMQVTSEGGPQPQSNILFSISNESVALV-SAAGLVQGLAIGNGTVSGLVQAVDAETGK 1151
Query: 1064 VVIC-QAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIH--PLFPEGDVFSFYELC--RNYN 1118
VVI Q V+V + +V + A ++ G +MPI+ + + FSF ++
Sbjct: 1152 VVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFSFGNAVPGLTFH 1211
Query: 1119 WTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVA 1178
W++ +L L + H + L S + F + GR GRT +
Sbjct: 1212 WSVTKRDVLD--LRGRHHEASIRLPS---------------QYNFAMNVLGRVKGRTGLR 1254
Query: 1179 TTF-SCDFVSDS-YSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSES 1236
+ D S Y +R S I + V L L L P + +L S +
Sbjct: 1255 VVVKAVDPTSGQLYGLARELSDEIQVQVFEKLQL---------LNPEIEAEQILMSPNSY 1305
Query: 1237 HGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISI--DGDTIKTTSSNHLACIQAKDRSS 1294
++ S+ Y +L EK D+ G I T++ + A++
Sbjct: 1306 IKLQTNRDGAASLSYRVLD-GPEKVPVVHVDEKGFLASGSMIGTSTIE----VIAQEPFG 1360
Query: 1295 GRIEIASCVRVAEVAQIRISNRYPLN------VIHLAVGAECEIPISYYDALGTPFHEAH 1348
I V+V+ V+ +R+S L+ ++ + +G + ++D G FH AH
Sbjct: 1361 ANQTIIVAVKVSPVSYLRVSMSPVLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFH-AH 1419
Query: 1349 NVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQ 1408
+ +L A TN D V I + + ++ G L++V P SD++ + V
Sbjct: 1420 SSVLNFA-TNRDDFVQIGKGPTNNTCV-VRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQA 1477
Query: 1409 LYPQ-NPVLHVGGSLDF-----SVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGST 1462
+ P+ + + VG L S+EG SG W S S++H+ +G A A +GS
Sbjct: 1478 ISPELSGAMVVGDVLCLATVLTSLEGL----SGTWSSSANSILHIDPKTGVAVARAVGSV 1533
Query: 1463 KVFFEC 1468
V++E
Sbjct: 1534 TVYYEV 1539
>sp|P11654|PO210_RAT Nuclear pore membrane glycoprotein 210 OS=Rattus norvegicus GN=Pom210
PE=1 SV=1
Length = 1886
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 329/1492 (22%), Positives = 600/1492 (40%), Gaps = 212/1492 (14%)
Query: 40 ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADS-ILLTVAEAMSIEPPSPVFVL 98
E+E + D +V G+ G + + E + ++ + + L + E + + P V++L
Sbjct: 195 EMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLILENILLNPAYDVYLL 254
Query: 99 VGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNS----------SVAQVDNMMGLTQALR 148
VG ++ YK++ IR +++PS + + NS VA + A++
Sbjct: 255 VGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPDPQGDPARPVAVLTQDTSRVTAMQ 314
Query: 149 LGQTAVIV--EDTRVAGHTQV--SSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARW 204
+GQ+ +++ R+ G +++ S++ VV L + P GD RW
Sbjct: 315 MGQSNLVLGHRSIRMQGASRLPNSTIYVVEAGYLGFTVHP----GD------------RW 358
Query: 205 FVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDN-QSECWRTFSMPNDLVLKHGWRN 263
+ +G Y + ++VF + S ++Y SD+I++ +E + S + H
Sbjct: 359 VLETGHLYAVTIEVFDRS--SNKVY--PSDNIRIEAVFPAEFFEVLSSSQNGSYHH---- 410
Query: 264 SRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSES 319
++A G ++ASLT G+H V ++ V ++ + + + S
Sbjct: 411 ---VRAIQSGQTTISASLTSVVDQDGGVH--------VLQVPVWNQQEVDIHIPITLYPS 459
Query: 320 IL-LPWAP--GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQ-AKKPGKATV 375
IL PW P G YQ + A GG S ++ W SS ++T GV+ G + +
Sbjct: 460 ILTFPWQPKTGAYQYT-IKAHGG----SGNFTWSSSSYMVATVTVKGVMTTGGDTGLSVI 514
Query: 376 KVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAF 435
+ + + ++ E+ + V PSSM VE VG L+ +T+ L
Sbjct: 515 RAHDVQNPLHFGEMKVYVIEPSSM-EFAPCQVEARVGHTLELPLTISGL-------MPGG 566
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
SS V + F ++ + Q L H CS + A + G T T
Sbjct: 567 SSEVVTLSDCSHFDLVVEVENQGVFQPLPGRLPPGPEH---CSGVKVRADAQGST----T 619
Query: 496 LSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEAL 555
L Y H G + L A +AAY PL +A D S LG S+
Sbjct: 620 LLVSYTH------GHVHLGAKITLAAYLPL---KAVDPSSVA--VVTLGSSK-------- 660
Query: 556 DKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYG 615
++L GGP PW +E + F + + + + ++ + Y
Sbjct: 661 -----------EMLFEGGPRPW-----VLEPSKFFRNVTSEDTGSISLSLLGPPASRNYQ 704
Query: 616 -----VFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERK 670
V CQ LG + GN +P PAV + C+ P+ + L+ + +
Sbjct: 705 QHRVLVTCQALGEQVIALSVGNRPSLSNPFPAVEPTVVKSVCAPPSRLTLMPVYALPQLD 764
Query: 671 VIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWE-----LS 725
+ Q ++ +V PV+ + + A G F N SSL + WE L+
Sbjct: 765 LSCPLLQQNK-----QVVPVSSHRNPLLDLGA--YDQQGRRFDNFSSLSIQWESFRPLLA 817
Query: 726 NCD-----GLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQL 780
+ + L DD G QK + V SG + ATA+G+ + +
Sbjct: 818 SIEVDQPMQLVSQDDGNG-QKKLHGLQTVSV-HEASGTTAISATATGYQQSHLSAAGVKQ 875
Query: 781 LEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEV 840
L ++ ++ L LV +RV+PE ++ +P + L I GS + + ++ V
Sbjct: 876 LRDPLVPVSASIELILVEDVRVSPEEVTIYNHPGVQVELHITEGSGYFFLNTSTQDIINV 935
Query: 841 IQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD--WIKIMSGEEI- 897
A + R + M+ P G++ V V+D+ L P A A + V+D+ +++++ EI
Sbjct: 936 --AYQDTRGVA-MVHPLFPGSSTVMVHDLCLTFPAPAKATIHVSDIQELYVRVVDKVEIG 992
Query: 898 SLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELID-DDATSSPDGGYFSM 956
++ + +D F + +T+MD+++ I+ L+ D+A +
Sbjct: 993 KAVKAYVRVLDFYK-----KPFLAKYFTFMDLKLRAASQIITLVTLDEALDN------YT 1041
Query: 957 SSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLK 1016
++F + +G T+L S +SG + S ++EV+ P R+ P + L+ GA +T +
Sbjct: 1042 ATFLVHGVAIGQTSLSASVTDKSGQRVSSTAQQIEVFPPFRLIPRKVTLIIGAMIQITSE 1101
Query: 1017 GGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG----NGDVVIC-QAFS 1071
GGP + ++ +E +A + S+G + + GN +++ V G V+I Q
Sbjct: 1102 GGPQPQSNILFSINNESVAAV-SSAGLVRGLMVGNGSVLGVVQAVDAETGKVIIVSQDHV 1160
Query: 1072 SVKVGVPSSVTLNAQSDQLAVGHEMPIH--PLFPEGDVFSFYELC--RNYNWTIEDEKIL 1127
V+V +V + A ++ G +MP++ + FSF ++W++ +L
Sbjct: 1161 EVEVLQLQAVRIRAPITRMRTGTQMPVYVTGITSNQSPFSFGNAVPGLTFHWSVTKRDVL 1220
Query: 1128 GFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSC--DF 1185
L + ++ S + F+ + ++GR GRT +
Sbjct: 1221 ------DLRGRHHEVSIRLSPQYNFAMN-----------VHGRVKGRTGLRVVVKALDPT 1263
Query: 1186 VSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSH 1245
+ + S I + V L L L P + +L S + ++
Sbjct: 1264 AGQLHGLGKELSDEIQIQVFEKLRL---------LNPEVEAEQILMSPNSFIKLQTNRDG 1314
Query: 1246 KGSIVYSLLKFCSEKNEAASKDD--ISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCV 1303
+ Y +L EK D+ + G I ++ + A++ + V
Sbjct: 1315 AAILSYRVLD-GPEKAPIVHIDEKGFLVSGSGIGVSTLE----VIAQEPFGTNQTVLVAV 1369
Query: 1304 RVAEVAQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPFHEAHNVILYHAET 1357
+V+ ++ +RIS L+ H L +G + ++D+ G FH AHN L A T
Sbjct: 1370 KVSPISYLRISMSPVLHTQHKEVLTALPLGMTVTFTVHFHDSSGDIFH-AHNSDLNFA-T 1427
Query: 1358 NYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQ-NPVL 1416
N D V I + I ++ G L+ V SD+V + V + P+ + +
Sbjct: 1428 NRDDFVQIGKGATNNTCI-IRTVSVGLTLLHVWDVEHLGLSDFVPLPVLQAITPELSGAV 1486
Query: 1417 HVGGSLDFSVEGFS-DQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFE 1467
VG L + S VSG W S +V++V +G A A G V++E
Sbjct: 1487 VVGDILCLASVLISLGGVSGTWSSSAGNVLYVDPKTGVAIARDAGPVTVYYE 1538
>sp|Q9QY81|PO210_MOUSE Nuclear pore membrane glycoprotein 210 OS=Mus musculus GN=Nup210 PE=1
SV=2
Length = 1886
Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 334/1501 (22%), Positives = 595/1501 (39%), Gaps = 230/1501 (15%)
Query: 40 ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADS-ILLTVAEAMSIEPPSPVFVL 98
E+E + D +V G+ G + + E + ++ + + L + E + + P V++L
Sbjct: 195 EMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLILENILLNPAYDVYLL 254
Query: 99 VGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNS----------SVAQVDNMMGLTQALR 148
VG ++ YK++ IR +++PS + + NS VA + A++
Sbjct: 255 VGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPDPQGDPARPVAILTQDTSRVTAMQ 314
Query: 149 LGQTAVIV--EDTRVAGHTQV--SSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARW 204
+GQ+ +++ R+ G +++ S++ VV L + P GD RW
Sbjct: 315 MGQSNLVLGHRSIRMQGASRLPNSTIYVVEAGYLGFTVYP----GD------------RW 358
Query: 205 FVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDN-QSECWRTFSMPNDLVLKHGWRN 263
+ +G Y I ++VF + S ++Y SD+I++ +E + S + H
Sbjct: 359 VLETGHLYAITIEVFDRS--SNKVY--PSDNIRIEAVLPAEFFEVLSSSQNGSYHH---- 410
Query: 264 SRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSES 319
++A G ++A+LT G+H V ++ V ++ + + + S
Sbjct: 411 ---IRAIQSGQTAISATLTSVVDQDGGVH--------VLQVPVWNQQEVDIHIPITLYPS 459
Query: 320 IL-LPWAP--GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAK-KPGKATV 375
IL PW P G YQ T S ++ W SS ++T GV+ G + +
Sbjct: 460 ILTFPWQPKTGAYQ-----YTIKAHGGSGNFSWSSSSSMVATVTVKGVMTTSGDTGLSVI 514
Query: 376 KVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAF 435
+ + + ++ E+ + V PSSM VE VG L+ +T+
Sbjct: 515 RAHDVQNPLHFGEMKVYVIEPSSM-EFAPCQVEARVGHTLELPLTISGF-------MPGG 566
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
S V + F ++ + Q L H CS + A + G T L +
Sbjct: 567 GSEVVTLSDCSHFDLVVEVENQGVFQPLPGRLPPGPEH---CSGVKVKADAQGSTTLLVS 623
Query: 496 LSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEAL 555
+ + H D A +AAY PL +A D S LG S+
Sbjct: 624 YTHGHVHLD----------AKITLAAYLPL---KAVDPSSVA--VVTLGSSK-------- 660
Query: 556 DKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYG 615
++L GGP PW +E + F + + + + ++ + Y
Sbjct: 661 -----------EMLFEGGPRPW-----VLEPSKFFRNVTSEDTGSISLSLLGPPASRNYQ 704
Query: 616 -----VFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERK 670
+ CQ LG + GN +P PAV + C+ P+ + L+ + +
Sbjct: 705 QHRVLMTCQALGEQVIALSVGNRPSLSNPFPAVEPTVVKSICAPPSRLTLMPVYALPQLD 764
Query: 671 VIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWE------- 723
+ Q ++ +V PV+ + + A G F N SSL + WE
Sbjct: 765 LSCPLLQQNK-----QVVPVSSHRNPLLDLGA--YDQQGRRFDNFSSLSIQWESSRPLLA 817
Query: 724 ---LSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGF-----CDAKDGH 775
L L DD G QK + V SG + ATA+G+ +A+
Sbjct: 818 SIELDQPMQLVSQDDGNG-QKKLHGLQTVSV-HEASGTTAISATATGYQQSHLSEARVKQ 875
Query: 776 HSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDS 835
L+ +S S + L LV +RV+PE ++ +P + L I GS + +
Sbjct: 876 PHDPLVPVSAS-----IELILVEDVRVSPEEMTIYNHPGVQVELYITEGSGYFFLNTSTQ 930
Query: 836 QVVEVI-QAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD--WIKIM 892
+++V Q G+ + +L G++ V V+D+ LA P A A++ V+D+ +++++
Sbjct: 931 DIIKVAYQDTRGVALVHPLLP----GSSTVMVHDLCLAFPAPAKAIIHVSDIQELYVRVV 986
Query: 893 SGEEI-SLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELID-DDATSSPD 950
EI ++ + +D F + +T+MD+++ I+ L+ D+A +
Sbjct: 987 DKVEIGKAVKAYVRVLDFYK-----KPFLAKYFTFMDLKLQAASQIITLVTLDEALDN-- 1039
Query: 951 GGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGAS 1010
++F + +G T+L S +SG + S P ++EV+ P R+ P + L+ GA
Sbjct: 1040 ----YTATFLVHGVAIGQTSLSASVTDKSGQRVSSTPQQIEVFPPFRLIPRKVTLIIGAM 1095
Query: 1011 YMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG----NGDVVI 1066
+T +GGP + ++ +E +A + SSG + + GN +++ V G V+I
Sbjct: 1096 MQITSEGGPQPQSNILFSINNESVAAV-SSSGLVRGLMVGNGSVLGVVQAVDAETGKVII 1154
Query: 1067 C-QAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEG-----DVFSFYELC--RNYN 1118
Q V+V +V + A ++ G +MP+ F G FSF ++
Sbjct: 1155 VSQDLVEVEVLQLQAVRIRAPITRMRTGTQMPV---FVTGITSNQSPFSFGNAVPGLTFH 1211
Query: 1119 WTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVA 1178
W++ +L L + H + L + F +YGR GRT +
Sbjct: 1212 WSVTKRDVLD--LRGRHHEVSIRL---------------PPQYNFAMNVYGRVKGRTGLR 1254
Query: 1179 TTFSC--DFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSES 1236
+ + S I + V L L L P + +L S +
Sbjct: 1255 VVVKALDPTAGQLHGLGKELSDEIQIQVFEKLRL---------LNPEIEAEQILMSPNSF 1305
Query: 1237 HGQWDSQSHKGSIVYSLLKFCSEKNEAASKDD--ISIDGDTIKTTSSNHLACIQAKDRSS 1294
++ + Y +L EK D+ + G I ++ + A++
Sbjct: 1306 IKLQTNRDGAAILSYRVLD-GPEKAPIVHTDEKGFLVSGSGIGVSTLE----VIAQEPFG 1360
Query: 1295 GRIEIASCVRVAEVAQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPFHEAH 1348
I V+V+ V+ +RIS L+ H L +G + ++D+ G FH AH
Sbjct: 1361 TNQTILVAVKVSPVSYLRISMSPVLHTQHKEALTALPLGMTVTFIVHFHDSSGDIFH-AH 1419
Query: 1349 NVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQ 1408
N +L A TN D V I + I ++ G L+ V SD+V + V
Sbjct: 1420 NSVLNFA-TNRDDFVQIGKGATNNTCI-IRTVSVGLTLLHVWDVEHLGLSDFVPLPVLQA 1477
Query: 1409 LYPQ-NPVLHVGGSLDF-SVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFF 1466
+ P+ + + VG L SV VSG W S V++V +G A A GS V++
Sbjct: 1478 ITPELSGAVVVGDILCLASVLTSLGGVSGTWSSSASHVLYVDPKTGVAIARDAGSVTVYY 1537
Query: 1467 E 1467
E
Sbjct: 1538 E 1538
>sp|Q07591|EAE_CITFR Intimin OS=Citrobacter freundii GN=eae PE=3 SV=1
Length = 936
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 315 GVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKAT 374
GV+ S+ W Y +V+L ATGG K Y W SS+ S+ SGV+ + G AT
Sbjct: 764 GVTGSLPKNWLQ--YGQVKLQATGGNGK----YTWKSSNTKIASVDNSGVITLNEKGSAT 817
Query: 375 VKVVS 379
+ VVS
Sbjct: 818 ITVVS 822
>sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1
Length = 331
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 333 ELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIE 392
E++ TG DY +S + V++ G A A + + ++ YDEI +
Sbjct: 43 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA-----ALAQCAKLAEARGYDEINLN 97
Query: 393 VSTPSSMVMLRNFPVETVVGSHLQA------------AVTMKTLNG-----AYFYRCDAF 435
V PS V F + + L A VT+KT G +Y + CD F
Sbjct: 98 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD-F 156
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++V+ K E FI+ ++ +L L E + PP + +Y
Sbjct: 157 INTVSGKGECEMFII---HARKAWLSGLSPKE---NREIPPLDYPRVY-----------Q 199
Query: 496 LSKDYQHFDRSFDGPI 511
L +D+ H S +G I
Sbjct: 200 LKRDFPHLTMSINGGI 215
>sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12)
GN=dusA PE=3 SV=3
Length = 330
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 333 ELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIE 392
E++ TG DY +S + V++ G A A + + ++ YDEI +
Sbjct: 42 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA-----ALAQCAKLAEARGYDEINLN 96
Query: 393 VSTPSSMVMLRNFPVETVVGSHLQA------------AVTMKTLNG-----AYFYRCDAF 435
V PS V F + + L A VT+KT G +Y + CD F
Sbjct: 97 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD-F 155
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++V+ K E FI+ ++ +L L E + PP + +Y
Sbjct: 156 INTVSGKGECEMFII---HARKAWLSGLSPKE---NREIPPLDYPRVY-----------Q 198
Query: 496 LSKDYQHFDRSFDGPI 511
L +D+ H S +G I
Sbjct: 199 LKRDFPHLTMSINGGI 214
>sp|Q8X5V6|DUSA_ECO57 tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA
PE=3 SV=2
Length = 330
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 333 ELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIE 392
E++ TG DY +S + V++ G A A + + ++ YDEI +
Sbjct: 42 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA-----ALAQCAKLAEARGYDEINLN 96
Query: 393 VSTPSSMVMLRNFPVETVVGSHLQA------------AVTMKTLNG-----AYFYRCDAF 435
V PS V F + + L A VT+KT G +Y + CD F
Sbjct: 97 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD-F 155
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++V+ K E FI+ ++ +L L E + PP + +Y
Sbjct: 156 INTVSGKGECEMFII---HARKAWLSGLSPKE---NREIPPLDYPRVY-----------Q 198
Query: 496 LSKDYQHFDRSFDGPI 511
L +D+ H S +G I
Sbjct: 199 LKRDFPHLTMSINGGI 214
>sp|Q7UBC5|DUSA_SHIFL tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3
SV=2
Length = 330
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 333 ELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIE 392
E++ TG DY +S + V++ G A A + + ++ YDEI +
Sbjct: 42 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA-----ALAQCAKLAEARGYDEINLN 96
Query: 393 VSTPSSMVMLRNFPVETVVGSHLQA------------AVTMKTLNG-----AYFYRCDAF 435
V PS V F + + L A VT+KT G +Y + CD F
Sbjct: 97 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD-F 155
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++V+ K E FI+ ++ +L L E + PP + +Y
Sbjct: 156 INTVSGKGECEMFII---HARKAWLSGLSPKE---NREIPPLDYPRVY-----------Q 198
Query: 496 LSKDYQHFDRSFDGPI 511
L +D+ H S +G I
Sbjct: 199 LKRDFPHLTMSINGGI 214
>sp|B0K3X8|PRMA_THEPX Ribosomal protein L11 methyltransferase OS=Thermoanaerobacter sp.
(strain X514) GN=prmA PE=3 SV=1
Length = 308
Score = 34.3 bits (77), Expect = 9.3, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 213 LIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQ 272
++++K F G+ ++ ++E D+ +N + ++ + +V+K W + SQ
Sbjct: 84 IVELKSFGIDIGNFDVKVSEVDEADWENNWKQYYKPLKIGKKIVIKPSWE-----EYVSQ 138
Query: 273 G---LGKLTASLTYFSGLHD-TKEVLKVVQEIMVCDRIKFSLDQTNGV 316
G + +L + + +G H+ TK L+ +++I++ + I F + +G+
Sbjct: 139 GEEIIIELDPGMAFGTGTHETTKMCLEFLEDIVMPESIVFDVGCGSGI 186
>sp|B0KA79|PRMA_THEP3 Ribosomal protein L11 methyltransferase OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=prmA PE=3
SV=1
Length = 308
Score = 34.3 bits (77), Expect = 9.9, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 213 LIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQ 272
++++K F G+ ++ ++E D+ +N + ++ + +V+K W + SQ
Sbjct: 84 IVELKSFGIDIGNFDVKVSEVDEADWENNWKQYYKPLKIGKKIVIKPSWE-----EYVSQ 138
Query: 273 G---LGKLTASLTYFSGLHD-TKEVLKVVQEIMVCDRIKFSLDQTNGV 316
G + +L + + +G H+ TK L+ +++I++ + I F + +G+
Sbjct: 139 GEEIIIELDPGMAFGTGTHETTKMCLEFLEDIVMPESIVFDVGCGSGI 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 661,199,310
Number of Sequences: 539616
Number of extensions: 28166876
Number of successful extensions: 67781
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 67573
Number of HSP's gapped (non-prelim): 267
length of query: 1799
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1667
effective length of database: 120,340,147
effective search space: 200607025049
effective search space used: 200607025049
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)