Query 000245
Match_columns 1797
No_of_seqs 4 out of 6
Neff 1.3
Searched_HMMs 29240
Date Tue Mar 26 17:03:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000245.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_23-27//hhsearch_pdb/000245hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j9u_A VPS28, vacuolar protein 1.0 1 1 14.2 0.5 13 1778-1790 24-36 (96)
2 2j9w_A VPS28, VPS28-PROV prote 1.0 1 1 13.9 0.5 13 1778-1790 27-39 (102)
3 3n40_P P62 envelope glycoprote 1.0 1 1 9.3 1.0 12 1449-1460 241-252 (401)
4 2rrf_A Zinc finger FYVE domain 1.0 1 1 9.3 0.6 25 87-111 21-45 (141)
5 3j0f_I E2 envelope glycoprotei 1.0 1 1 9.1 0.6 13 1449-1461 180-192 (423)
6 2yew_C E2 envelope glycoprotei 1.0 1 1 8.9 0.8 12 1449-1460 178-189 (421)
7 2xfc_B E2 envelope glycoprotei 1.0 1 1 8.8 1.0 17 1458-1474 29-45 (423)
8 2agh_C Zinc finger protein HRX 1.0 1 1 8.5 -0.0 8 372-379 19-26 (31)
9 1j6w_A Autoinducer-2 productio 1.0 1 1 8.4 -4.2 36 551-586 43-82 (175)
10 4gua_A Non-structural polyprot 1.0 1 1 8.3 0.1 40 23-70 518-557 (670)
No 1
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=1.00 E-value=1 Score=14.19 Aligned_cols=13 Identities=46% Similarity=0.902 Sum_probs=7.2
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 5776543016999
Q 000245 1778 GMQSKDQIHPLIR 1790 (1797)
Q Consensus 1778 gmqskdqihplir 1790 (1797)
+|..+||+||+++
T Consensus 24 ~~~a~DqLhP~L~ 36 (96)
T 2j9u_A 24 NYNAKDQLHPLLA 36 (96)
T ss_dssp TCCBHHHHHHHHH
T ss_pred CCHHHHHHCCHHH
T ss_conf 1256876670599
No 2
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=1.00 E-value=1 Score=13.92 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=7.0
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 5776543016999
Q 000245 1778 GMQSKDQIHPLIR 1790 (1797)
Q Consensus 1778 gmqskdqihplir 1790 (1797)
+|..+||+||+++
T Consensus 27 n~~a~DqLhPlL~ 39 (102)
T 2j9w_A 27 EIRAMDEIQPDLR 39 (102)
T ss_dssp TCCBHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 2166876645799
No 3
>3n40_P P62 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 3n44_B* 3n41_B* 3n42_B* 3n43_B* 2xfb_B 3n44_A* 3n41_A* 3n42_A* 3n43_A*
Probab=1.00 E-value=1 Score=9.34 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=6.0
Q ss_pred HHHCCCCEEECC
Q ss_conf 731289702113
Q 000245 1449 MSKQGNDTYISP 1460 (1797)
Q Consensus 1449 mskqgndtyisp 1460 (1797)
||.+|+..||.|
T Consensus 241 ls~~~g~v~itp 252 (401)
T 3n40_P 241 MSQQSGNVKITV 252 (401)
T ss_dssp EEEETTEEEECC
T ss_pred EEECCCCEEEEC
T ss_conf 551378279954
No 4
>2rrf_A Zinc finger FYVE domain-containing protein 21; zfyve21, PH, unknown function; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=9.30 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 3322489873344201000123567
Q 000245 87 GETFLGSPSAVQVSIEDTCRVSKSS 111 (1797)
Q Consensus 87 GeSFL~SPSv~~v~~EeT~rvses~ 111 (1797)
|++|+-|+.-+--+..-.||.|.+|
T Consensus 21 GatF~Vs~~~sek~e~~vCrLS~nh 45 (141)
T 2rrf_A 21 GATFLVTFGNSEKPETMTCRLSNNQ 45 (141)
T ss_dssp CEEEEECCSSCCSCEEEEEEECTTS
T ss_pred CCEEEEECCCCCCCCEEEEEECCCE
T ss_conf 8569985167887705888726980
No 5
>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1z8y_J
Probab=1.00 E-value=1 Score=9.14 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=8.0
Q ss_pred HHHCCCCEEECCC
Q ss_conf 7312897021132
Q 000245 1449 MSKQGNDTYISPV 1461 (1797)
Q Consensus 1449 mskqgndtyispv 1461 (1797)
||.||+..||.|-
T Consensus 180 ls~s~g~V~itpp 192 (423)
T 3j0f_I 180 LEESSGKVYAKPP 192 (423)
T ss_pred EEECCCCEEEECC
T ss_conf 8722881799679
No 6
>2yew_C E2 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=1.00 E-value=1 Score=8.94 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=6.3
Q ss_pred HHHCCCCEEECC
Q ss_conf 731289702113
Q 000245 1449 MSKQGNDTYISP 1460 (1797)
Q Consensus 1449 mskqgndtyisp 1460 (1797)
||.+|+..||.|
T Consensus 178 ls~s~g~v~itp 189 (421)
T 2yew_C 178 VSNTGKSYSLDP 189 (421)
T ss_dssp CBCCTTEEEECC
T ss_pred EEECCCCEEEEC
T ss_conf 440388179965
No 7
>2xfc_B E2 envelope glycoprotein; receptor binding, membrane fusion, icosahedral envelo; 9.00A {Chikungunya virus}
Probab=1.00 E-value=1 Score=8.77 Aligned_cols=17 Identities=47% Similarity=0.741 Sum_probs=0.0
Q ss_pred ECCCCCCCCCCCCCCCC
Q ss_conf 11321122345688887
Q 000245 1458 ISPVSIEKETSENSDGT 1474 (1797)
Q Consensus 1458 ispvsieketsensdgt 1474 (1797)
.||+.||.--++.+||+
T Consensus 29 ~SPIaIE~V~sea~DG~ 45 (423)
T 2xfc_B 29 HSPVALERIRNEATDGT 45 (423)
T ss_dssp EETTCEEEEECCCTTCC
T ss_pred CCCCEEEEEECCCCCCE
T ss_conf 88322232001477865
No 8
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=8.51 Aligned_cols=8 Identities=63% Similarity=0.941 Sum_probs=0.0
Q ss_pred CCHHHHHC
Q ss_conf 83033103
Q 000245 372 TPAMQTEG 379 (1797)
Q Consensus 372 ~PamQ~~G 379 (1797)
+|+||.+|
T Consensus 19 tpsmqal~ 26 (31)
T 2agh_C 19 TPSMQALG 26 (31)
T ss_dssp SCCCCCCC
T ss_pred CHHHHHHH
T ss_conf 84388872
No 9
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=1.00 E-value=1 Score=8.44 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHCCCCC
Q ss_conf 4579554678445410001335631347----55039864
Q 000245 551 QNKNASDLHDIPVLDEEAGETEGKDLEE----VIKTEPKG 586 (1797)
Q Consensus 551 ~NKN~~~L~~I~vLdeEa~~~EGk~Lee----V~~~~Pk~ 586 (1797)
||+..-.--+||-|+--...---..++. ||+|+|-|
T Consensus 43 PN~e~m~~~~iHTlEHL~A~~lRnh~~~~~~~iId~sPMG 82 (175)
T 1j6w_A 43 PNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMG 82 (175)
T ss_dssp TTTCCCCHHHHHHHHHHHHHHHHHHHCBTTBEEEEEEECT
T ss_pred CCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 8822278742069999888887507567887699968967
No 10
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=1.00 E-value=1 Score=8.30 Aligned_cols=40 Identities=33% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 998644566430103664202686678873011012355431122212
Q 000245 23 PGSGHFDSTADETFSRELKKFQGTLNVPPDTVEYLGETKDMQAASDFG 70 (1797)
Q Consensus 23 ~~~~~~DaTADE~~~reLK~~~G~lN~PPet~EYl~~TK~MQvAsd~~ 70 (1797)
+.|||-||. |+.-+|---.--.++-||+-||--|+|-|++
T Consensus 518 lvrVhP~Ss--------L~gr~GyStt~Gk~~SyleGTkFHQ~A~d~A 557 (670)
T 4gua_A 518 LVWIHPDSC--------LKGRKGFSTTKGKLYSYFEGTKFHQAAKDMA 557 (670)
T ss_dssp CEECCTTCT--------TTTSTTEESSCSBSBCCCTTSTTHHHHHHHH
T ss_pred EEEECCCHH--------CCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 587388211--------0589886467784666305740667788899
Done!