Query 000245
Match_columns 1797
No_of_seqs 4 out of 6
Neff 1.3
Searched_HMMs 13730
Date Tue Mar 26 17:11:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000245.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_23-27//hhsearch_scop/000245hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j9ua1 a.24.28.1 (A:148-241) 29.7 6.5 0.00048 13.8 0.5 12 1778-1789 23-34 (94)
2 d1e0ca1 c.46.1.2 (A:1-135) Sul 4.0 92 0.0067 7.1 0.5 28 25-54 25-52 (135)
3 d1ci3m1 b.2.6.1 (M:1-169,M:232 3.6 83 0.0061 7.4 -0.5 34 1200-1244 151-184 (187)
4 d1tf5a3 c.37.1.19 (A:1-226,A:3 3.5 88 0.0064 7.2 -0.5 10 788-797 97-106 (273)
5 d1e2wa1 b.2.6.1 (A:1-168,A:233 3.2 94 0.0069 7.1 -0.5 34 1201-1245 151-184 (187)
6 d2cs4a1 d.15.1.5 (A:8-91) Ras 2.6 1.6E+02 0.011 5.8 -0.0 18 531-548 9-26 (84)
7 d2cx1a2 d.17.6.4 (A:1-90) Hypo 2.5 1.6E+02 0.011 5.8 -0.1 24 1257-1280 48-71 (90)
8 d2hfqa1 d.375.1.1 (A:1-85) Hyp 2.5 1.6E+02 0.012 5.7 0.1 19 695-713 52-70 (85)
9 d2j0wa1 c.73.1.3 (A:3-294) Asp 2.3 1.8E+02 0.013 5.4 0.6 19 317-335 211-229 (292)
10 d1vjea_ d.185.1.2 (A:) Autoind 2.2 32 0.0023 9.8 -4.0 36 551-586 39-74 (149)
No 1
>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.67 E-value=6.5 Score=13.75 Aligned_cols=12 Identities=50% Similarity=0.994 Sum_probs=5.1
Q ss_pred CCCCCCCHHHHH
Q ss_conf 577654301699
Q 000245 1778 GMQSKDQIHPLI 1789 (1797)
Q Consensus 1778 gmqskdqihpli 1789 (1797)
+|.++||+||++
T Consensus 23 ~~~a~DqLhPlL 34 (94)
T d2j9ua1 23 NYNAKDQLHPLL 34 (94)
T ss_dssp TCCBHHHHHHHH
T ss_pred CCCCHHHHCHHH
T ss_conf 675220335459
No 2
>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=4.03 E-value=92 Score=7.14 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=12.0
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCH
Q ss_conf 864456643010366420268667887301
Q 000245 25 SGHFDSTADETFSRELKKFQGTLNVPPDTV 54 (1797)
Q Consensus 25 ~~~~DaTADE~~~reLK~~~G~lN~PPet~ 54 (1797)
-+-+|....+-|.+. ..+|++|.|...+
T Consensus 25 ~viiDvR~~~ey~~g--HIpgA~~~~~~~~ 52 (135)
T d1e0ca1 25 LILVDLTSAARYAEG--HIPGARFVDPKRT 52 (135)
T ss_dssp EEEEECSCHHHHHHC--BSTTCEECCGGGG
T ss_pred EEEEECCCHHHHHCC--CCCCCCCCCHHHH
T ss_conf 389979887888526--6752213661543
No 3
>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain {Phormidium laminosum [TaxId: 32059]}
Probab=3.58 E-value=83 Score=7.38 Aligned_cols=34 Identities=38% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 468878885210000138443035115899999888531022231
Q 000245 1200 DKGNEDRGPAMMAEEKSNENELLAVKDNSENKPSIGQEDSKHILQ 1244 (1797)
Q Consensus 1200 dkgnedrgpammaeeksnenellavkdnsenkpsigqedskhilq 1244 (1797)
--||..||-..-.-+|||- |--..||.|..-+||
T Consensus 151 vGgNRGRGQvYP~G~kSNN-----------NVGGFGQ~d~EiVLQ 184 (187)
T d1ci3m1 151 LGANRGRGQIYPTGEKSNN-----------NVGGFGQKDTEIVLQ 184 (187)
T ss_dssp EEEEESCCSBCTTSCBCSS-----------CCCEEEEEEEEEEEC
T ss_pred EECCCCCCCCCCCCCCCCC-----------CCCCCCCCCEEEEEC
T ss_conf 7055666536798754567-----------545557662389951
No 4
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=3.47 E-value=88 Score=7.25 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=3.2
Q ss_pred CCCCCCCCCC
Q ss_conf 2112468720
Q 000245 788 VAERSEGEND 797 (1797)
Q Consensus 788 ~aE~SkGe~d 797 (1797)
.|||.-|||-
T Consensus 97 iaem~TGEGK 106 (273)
T d1tf5a3 97 IAEMKTGEGK 106 (273)
T ss_dssp EEECCTTSCH
T ss_pred HEEECCCCCC
T ss_conf 3020688751
No 5
>d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.23 E-value=94 Score=7.07 Aligned_cols=34 Identities=35% Similarity=0.480 Sum_probs=22.0
Q ss_pred CCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 688788852100001384430351158999998885310222315
Q 000245 1201 KGNEDRGPAMMAEEKSNENELLAVKDNSENKPSIGQEDSKHILQE 1245 (1797)
Q Consensus 1201 kgnedrgpammaeeksnenellavkdnsenkpsigqedskhilqe 1245 (1797)
-||..||-..-.-+|||- |--..||.|..-+||.
T Consensus 151 GgNRGRGQvYP~G~kSNN-----------NVGGFGQ~e~EiVLQ~ 184 (187)
T d1e2wa1 151 GGNRGRGQVYPDGKKSNF-----------NVGGFGQAETEIVLQN 184 (187)
T ss_dssp EEEESCCSBCTTSCBCSS-----------CCCEEEEEEEEEEECC
T ss_pred ECCCCCCCCCCCCCCCCC-----------CCCCCCCCCEEEEECC
T ss_conf 055666636798754667-----------6455465521688317
No 6
>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing protein 8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.60 E-value=1.6e+02 Score=5.81 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=9.2
Q ss_pred HHHHCCCCCCCCCCHHHH
Q ss_conf 863013222111212454
Q 000245 531 REIKNVSEVDEKTECAEV 548 (1797)
Q Consensus 531 Re~K~~sEv~~KTE~AEV 548 (1797)
.+.+-|+-|..+|-|++|
T Consensus 9 ge~r~V~GVt~~TTC~DV 26 (84)
T d2cs4a1 9 GVQRIVCGVTEVTTCQEV 26 (84)
T ss_dssp TEEECCSSBCSSSCHHHH
T ss_pred CEEEEEECCCCCCCHHHH
T ss_conf 907788688999728999
No 7
>d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525, N-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=2.53 E-value=1.6e+02 Score=5.82 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 000367743333578996300013
Q 000245 1257 SVRSDENEESVVDADKSPCLMEIG 1280 (1797)
Q Consensus 1257 svrsdeneesvvdadkspclmeig 1280 (1797)
..|.|..+-.++..|.-|||.+..
T Consensus 48 kartdsgeyeiitvdgvpclfews 71 (90)
T d2cx1a2 48 KARTDSGEYEIITVDGVPCLFEWS 71 (90)
T ss_dssp EEECSSCEEEEEEETTEEEEEECT
T ss_pred EEECCCCCEEEEEECCCCEEEEEC
T ss_conf 760578836899965841788814
No 8
>d2hfqa1 d.375.1.1 (A:1-85) Hypothetical protein NE1680 {Nitrosomonas europaea [TaxId: 915]}
Probab=2.50 E-value=1.6e+02 Score=5.68 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=12.9
Q ss_pred CCCCEECCHHHHHHHHHCC
Q ss_conf 1352011238875533103
Q 000245 695 VNNAVFVRDEKAKENIQAE 713 (1797)
Q Consensus 695 v~naefv~deKa~enIQAa 713 (1797)
...--|||-+.|..+|+.+
T Consensus 52 ~~~C~FCHsE~A~~~V~~~ 70 (85)
T d2hfqa1 52 SEECRFCHSEKAPDEVIEA 70 (85)
T ss_dssp TTTBCCCEEEECCHHHHHH
T ss_pred HHHCCCCCCCCCCHHHHHH
T ss_conf 2105254676599899999
No 9
>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=2.27 E-value=1.8e+02 Score=5.39 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCCCCCCCH
Q ss_conf 6786333456788777890
Q 000245 317 DTQSVTPATDVSGVYEAEP 335 (1797)
Q Consensus 317 D~~SVT~a~D~S~~~E~~~ 335 (1797)
+...|+.-|||.|+|-+.|
T Consensus 211 ~A~~v~iwtDV~Gi~taDP 229 (292)
T d2j0wa1 211 HASRVDIWTDVPGIYTTDP 229 (292)
T ss_dssp TCSEEEEEESSSSEESSCT
T ss_pred HCHHHHHHCCCCCEEECHH
T ss_conf 0589998616752343632
No 10
>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}
Probab=2.21 E-value=32 Score=9.78 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 457955467844541000133563134755039864
Q 000245 551 QNKNASDLHDIPVLDEEAGETEGKDLEEVIKTEPKG 586 (1797)
Q Consensus 551 ~NKN~~~L~~I~vLdeEa~~~EGk~LeeV~~~~Pk~ 586 (1797)
||+..-+--++|-|+.-...---..++.||+|+|-|
T Consensus 39 PN~~~m~~~~~HTlEHL~A~~lRn~~~~iId~sPMG 74 (149)
T d1vjea_ 39 PNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDVSPMG 74 (149)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHHHHCTTEEEEEECT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 984558874124999988988873778848887876
Done!