Your job contains 1 sequence.
>000248
MTDKNPSRRELLDRWRGIEEEEELDDGNDPLKRRRIDGLKEKWFADAFNFLIGLPEKNHI
WCGSWDIMGPYLELFYNYFKDECHDSPLRLLWKRISGEMQHCIQCVSQHHQAQEMYSMEY
ESGVIGPLLDVLRSLDEERVTKYLREINARLAHQEYYPQIDNNQVICIMYEVLMFPVLLD
DQSLFTEFETFIEAVDNMHELALDGHQLFPGVFALFFFNRRVRTIGRRLARSMGKLRRAT
DLEPMQPLLKKFIGFLETEVLTSTFKTSRPRARLKRLPIWLGITSLLEFLEPPALEEGIL
ERYPIFFDIVLNHISGDSPEFSHAVSCLRELFKMLGYKLWLRSTLSPSVMRNTLLGQCFH
TRSEKIHKDIFDLFPPFLQSLEALQDGEHEKQRRHFLYFLLYQVPVSSNFSVLTAQMACK
ISLLIIHRGYKMNPPCPPFECAHMWGPFLVSSLKDSSLHSSLRQPAFDLIQTIIVSDAAA
LVTSVLKSARPLRTETIISVEMNEDEDDLKFPFDPDVDEKDDNSSWNEFTAQSRITSQEF
RVWMCIPMLWIDVLVDINPSVLPVSFSKVVFWARSHFSIVEPEISAEMALDVRAWLSSSA
TEISSTFGWKAPTGCDDGGAGKVSKNSMEVSTMCLPLIRAFKRLTAHFIVQIGQGELRKQ
WTWEPRMGESLILSLVDPNDNVRQFGKCILEQVSNTRGLASGLKFLSSSTSSLSAIFLGL
KHALKLVQLDSVLLKFQSLHHFFFVLRKIFEEGHLPKCDLLKSSSGHSSITMFSSQGGFL
RQPQFESFDANTGCSSNIDLKLWEKFHYTLSEITWPSVKRCLQEGKTFLDYSLCQMTCIR
VLEILPVVFGKVCPLLAEHSGYSATTTQNVFDFKWLHDLMDWGKSQLKVVIVYWKRTITC
LLNLLKDSCSGTSLLTVSSIENLISSDHLDVDGLVEKVSLLCVSLSKESSRNSGKTLMSM
AHFPEDLSVERKSAALDIRPFPVKDVDVEILDSETIASKSKDNLIVVSDDEIEKEPSVDQ
GLLSDFKSRQCVVVSKTGAPISDKRASQTESLKNRVSILDSSKDLLDGSGPASPKQVLDE
SVGKSLNSLDSKVVDGKKKESNSKFNASDSLSFQNRVGLRNKPVESSSFKNVNQASSNVV
AKPTNKLLKELVCDVENDPLESSFKSGKHQQTYLTKSGPFVPKRQVIQLKSPFENRCGLH
RMETGVKRFGPPKLDDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFV
SIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHLVRFVHDDNDSVTSK
IFSENDLVLLTRVSPQKTPHDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARR
NLLERSKWHATLIMSITPQLREFHALSSLKSIPLLPIILNPVNVSRGYNESRELDLGKLS
QLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATR
TSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALARQINEDSERDKKSSESSVRARVL
ICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLA
EERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGD
DVKLSDVELEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKSILKEAEIVV
TTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVVLVHEL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000248
(1789 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
DICTYBASE|DDB_G0285243 - symbol:DDB_G0285243 "putative sp... 156 6.0e-23 4
TAIR|locus:2126480 - symbol:AT4G30100 species:3702 "Arabi... 286 3.0e-21 3
TAIR|locus:2059088 - symbol:AT2G19120 "AT2G19120" species... 275 1.5e-19 1
DICTYBASE|DDB_G0274399 - symbol:DDB_G0274399 "DNA2/NAM7 h... 133 1.1e-18 4
TAIR|locus:2130384 - symbol:MAA3 "MAGATAMA 3" species:370... 122 6.2e-14 4
MGI|MGI:2443480 - symbol:Setx "senataxin" species:10090 "... 119 8.6e-14 9
POMBASE|SPBC29A10.10c - symbol:SPBC29A10.10c "tRNA-splici... 132 1.0e-13 4
UNIPROTKB|E1BAS6 - symbol:SETX "Uncharacterized protein" ... 117 2.5e-13 7
UNIPROTKB|D4AEB3 - symbol:Setx "Protein Setx" species:101... 120 4.5e-13 7
UNIPROTKB|Q7Z333 - symbol:SETX "Probable helicase senatax... 117 4.9e-13 7
UNIPROTKB|F1PHA4 - symbol:SETX "Uncharacterized protein" ... 117 6.5e-13 7
UNIPROTKB|E1C4T7 - symbol:Gga.18015 "Uncharacterized prot... 139 7.7e-13 7
SGD|S000004422 - symbol:SEN1 "Presumed helicase and subun... 150 2.6e-12 5
UNIPROTKB|F1S0U6 - symbol:SETX "Uncharacterized protein" ... 114 6.6e-12 7
UNIPROTKB|G4NIZ8 - symbol:MGG_02784 "DNA-binding protein ... 117 8.5e-12 4
POMBASE|SPAC6G9.10c - symbol:sen1 "ATP-dependent 5' to 3'... 124 2.0e-10 6
ZFIN|ZDB-GENE-070402-1 - symbol:setx "senataxin" species:... 101 2.6e-10 8
DICTYBASE|DDB_G0268662 - symbol:DDB_G0268662 "DNA2/NAM7 h... 131 1.7e-08 3
DICTYBASE|DDB_G0268660 - symbol:DDB_G0268660 "DNA2/NAM7 h... 133 2.3e-08 4
DICTYBASE|DDB_G0268914 - symbol:DDB_G0268914 species:4468... 110 1.1e-07 7
DICTYBASE|DDB_G0268924 - symbol:DDB_G0268924 "Helicase SE... 122 2.5e-07 5
DICTYBASE|DDB_G0289529 - symbol:DDB_G0289529 species:4468... 108 8.7e-05 4
CGD|CAL0006154 - symbol:orf19.6199 species:5476 "Candida ... 93 0.00010 4
UNIPROTKB|Q5AAW1 - symbol:HCS1 "Putative uncharacterized ... 93 0.00010 4
POMBASE|SPCC737.07c - symbol:SPCC737.07c "DNA polymerase ... 93 0.00082 3
>DICTYBASE|DDB_G0285243 [details] [associations]
symbol:DDB_G0285243 "putative splicing endonuclease"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0285243 EMBL:AAFI02000076 KO:K10706
InterPro:IPR024481 Pfam:PF12726 RefSeq:XP_002649136.1
ProteinModelPortal:C7G036 EnsemblProtists:DDB0252844 GeneID:8625002
KEGG:ddi:DDB_G0285243 OMA:DSINMIF Uniprot:C7G036
Length = 2069
Score = 156 (60.0 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 75/300 (25%), Positives = 130/300 (43%)
Query: 1245 KLKEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSL----SVLSVE- 1299
+LK VP F + ++ IF+PL++EEF+AQ+ + E +++D+ + + V+
Sbjct: 1156 ELKPVPGTFDDLKHYIDIFQPLLIEEFRAQVIRNLDEGVNFQDVTVDNFIQENGFIDVDF 1215
Query: 1300 ---------RVDDFHLVRFVHDDNDSVTSKIFSENDLV-LLTRVSPQKTPHDVHMVGKVX 1349
+DDF LV N S ++ + + +L +V ++ + GK
Sbjct: 1216 ELPPKENDILLDDFVLV-IQPPRNGSPLNEAYRDPNLFSAFGKV--ERKDRIIPKGGKGN 1272
Query: 1350 XXXXXXXXXXX---ILLIRFYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHAX 1406
I+ +RFY + S + Q + + W+ + S++ RE+ A
Sbjct: 1273 FDQNGGGGGGGRGFIIKVRFYKASSSTFVQQICKI---GNIWNIQKVTSLSTISREYMAL 1329
Query: 1407 XXXXXXXXXXXXXXXVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSS 1466
++ N+S +L Q L++S NESQL AI+ S
Sbjct: 1330 HMVGKIPLGTSIISP-HLYINSNDSSSSTFKIPDKLFQKLRSSLNESQLSAIA------S 1382
Query: 1467 SWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTS-PKSHLKQNYSSCINSRPKIGQSA 1525
+ K SL+QGPPGTGKT+TI++++S T+ KSH C S + + A
Sbjct: 1383 TLKNLGGFSLLQGPPGTGKTKTILSLLSVFTTVLTNIEKSHSDPKILVCAPSNAAVDEIA 1442
Score = 153 (58.9 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 47/164 (28%), Positives = 86/164 (52%)
Query: 1558 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLV-- 1615
++L+CA SNAAVDE+ RI K+GL +G +KP + R+GN +HP+ +++L+
Sbjct: 1427 KILVCAPSNAAVDEIALRIKKDGLIDKNGNKFKPVICRIGNQSHIHPSVQDISVESLILG 1486
Query: 1616 DHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFE--AKRANTKDGNS--DPKNM 1671
+++ + D K E TR ++ EK V+ + + A+R ++ N +
Sbjct: 1487 EYKDKNSAIANEDQKKEN-TRLKIIKIK-EKQVEIDKQIKDLAERLKQQEDNKLRNEITK 1544
Query: 1672 LDDEVHK-GDDVKLSDVELEAKLRKLYEQ-KKQIYREL-GVAQV 1712
L+ K +D+KL+ E E + + Y K+ +Y + G +Q+
Sbjct: 1545 LNYTREKYNNDLKLAKDE-ERRFHEQYSNTKRNLYINIIGRSQI 1587
Score = 126 (49.4 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 46/247 (18%), Positives = 115/247 (46%)
Query: 15 WRGIEEEEELDDGNDPLKRRRIDGLKEKWFADAFNFLIGLPEKNHIWCGSWDIMGPYLEL 74
+ G E E+ L D KR I+ + + + +L+G P HIWC ++I +
Sbjct: 6 YEGQEYEQNLAD---EWKRTNIEAGPDYYLPKSVEYLLG-PGIVHIWCQHFEIAKLSFHI 61
Query: 75 FYNYFKDECHDSPLRLLWKRISGEMQHCIQCVSQHHQAQEMYSMEY-ESGVIGPLLDVLR 133
F Y +D+ + ++ ++ C++C ++ + + ++ + E ++++
Sbjct: 62 F-EYEEDDVLPDLYQRFKEKNREQLSTCLECSLRYRKQKSIFLKAFKEKFQHNNYIEIVS 120
Query: 134 SLDEERVTKYLREINARLAHQEYYPQIDNNQVICIMYEVLMFPVLLDDQSLFTEFETFIE 193
S+++ T+ +RE H Y D N +I +++EV+ LL+DQ L F I+
Sbjct: 121 SIEKVEKTR-VRE------HLNKYKD-DCNVLIILIHEVVNNVELLEDQELKKRFLYTID 172
Query: 194 AVDNMHELAL-DGHQLFPGVFALFFFNRRVRTIGRRLARSMGKLRRAT--DLEPMQPLLK 250
+ ++ D ++ PG++ + + + + + + + + + + +++ + P+++
Sbjct: 173 GFVREYSISFGDPNKKVPGIYMMLMASNKFKELKEWASSYLQTITKISMDEIQSVYPVIE 232
Query: 251 KFIGFLE 257
+ I L+
Sbjct: 233 RLITDLQ 239
Score = 95 (38.5 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
Identities = 29/99 (29%), Positives = 55/99 (55%)
Query: 1686 DVELEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKSILKEAEIVVTTLSG 1745
D +L ++ KL +++ +L +A+ +E++ +E+ K L +I+ ++I+++TLSG
Sbjct: 1535 DNKLRNEITKLNYTREKYNNDLKLAKDEERRFHEQYSNTKRNLYINIIGRSQIILSTLSG 1594
Query: 1746 CGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1784
G D + F ++N FD V++DEAAQ V
Sbjct: 1595 SGYD-----------YLF-TATKN--FDLVIVDEAAQAV 1619
Score = 52 (23.4 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 1277 SSFLEMSSWEDMYYGSLSVLSVERVDDFHLV--RFVHD-----DNDSVTSKIFSE--NDL 1327
+ F E+ W Y +++ +S++ + + V R + D DN IFSE ND+
Sbjct: 200 NKFKELKEWASSYLQTITKISMDEIQSVYPVIERLITDLQFNQDNKLNPDSIFSEEINDI 259
Score = 44 (20.5 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 729 LDSVLLKFQSLHHFFFVLRKIFE-EGHL---PKCDLLKSS 764
LDS+ + F H F+L+K + G L P D++ S+
Sbjct: 644 LDSINMIFYYSDHLIFILKKTLQVHGRLLIGPCVDVMWST 683
Score = 39 (18.8 bits), Expect = 8.8e-15, Sum P(3) = 8.8e-15
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 189 ETFIEAVDNMHELALD 204
E F +D++H++ LD
Sbjct: 1127 EDFTTKIDSLHKIILD 1142
Score = 38 (18.4 bits), Expect = 2.2e-11, Sum P(4) = 2.2e-11
Identities = 11/51 (21%), Positives = 28/51 (54%)
Query: 1680 DDVKLSDVELEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRK 1730
+D K + L K+ K+ E++ +I ++ + + E+ +E L++++ K
Sbjct: 1498 EDQKKENTRL--KIIKIKEKQVEIDKQ--IKDLAERLKQQEDNKLRNEITK 1544
Score = 38 (18.4 bits), Expect = 2.2e-10, Sum P(4) = 2.2e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 1329 LLTRVSPQKTPHDVHMV 1345
LL SP++ P+ H+V
Sbjct: 489 LLLASSPKQIPYTTHLV 505
Score = 38 (18.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 1429 NESRELDLGKLSQLQQILKTSFNESQ 1454
N+ +EL S LQ I K S +E Q
Sbjct: 200 NKFKELKEWASSYLQTITKISMDEIQ 225
Score = 37 (18.1 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 359 FHTRSEKIHKDIFDLFP 375
F T+ + +HK I D P
Sbjct: 1129 FTTKIDSLHKIILDWVP 1145
Score = 37 (18.1 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 910 SGTSLLTVSSIENLISSDHLDVDG 933
SG+ LL V + N S+D+ + G
Sbjct: 392 SGSLLLIVDILLNCFSTDNAEAWG 415
>TAIR|locus:2126480 [details] [associations]
symbol:AT4G30100 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009506 "plasmodesma"
evidence=IDA] GO:GO:0009506 EMBL:CP002687 EMBL:AL161576
GO:GO:0004519 eggNOG:COG1112 EMBL:AL078464 KO:K10706
InterPro:IPR026852 PANTHER:PTHR10887:SF27 HOGENOM:HOG000084788
ProtClustDB:CLSN2683158 IPI:IPI00535923 PIR:T08986
RefSeq:NP_194739.1 UniGene:At.31859 ProteinModelPortal:Q9SZW3
SMR:Q9SZW3 STRING:Q9SZW3 PaxDb:Q9SZW3 PRIDE:Q9SZW3
EnsemblPlants:AT4G30100.1 GeneID:829133 KEGG:ath:AT4G30100
TAIR:At4g30100 InParanoid:Q9SZW3 PhylomeDB:Q9SZW3
ArrayExpress:Q9SZW3 Genevestigator:Q9SZW3 Uniprot:Q9SZW3
Length = 1311
Score = 286 (105.7 bits), Expect = 3.0e-21, Sum P(3) = 3.0e-21
Identities = 139/534 (26%), Positives = 223/534 (41%)
Query: 1246 LKEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDFH 1305
L+ VP F+S +++V +F PL+ EE +AQL+S++ E++ E Y + + +ER +
Sbjct: 418 LQSVPERFESMDEYVRVFEPLLFEECRAQLYSTWEELA--EANSYMKVRIKFIERRERGW 475
Query: 1306 LVRFVHDDNDSVTSKIFSENDLVLLTRVSPQKTPHDV--HMVGKVXXXXXXXXXXXXILL 1363
++ N+ + + VL V + HD + G V +
Sbjct: 476 YDVILNSVNECKWA-FKEGDVAVLSNPVPESEGEHDDVGRVAGTVRRYIPVDTRDPHGAI 534
Query: 1364 IRFYL----QNGS-VRLNQARRNLLERSKWHATLIMSITPQLREF---HAXXXXXXXXXX 1415
+ FY+ +GS + N R L + WH T++ SI RE+ HA
Sbjct: 535 LHFYVGDAYDSGSKIDDNHILRKLKPKEIWHLTVLGSIATTQREYVALHAFSQLNPQMQN 594
Query: 1416 XXXXXXVNVSRGYNESRELDLGKLS-QLQQILKTSFNESQLQAIS-----VAIGLSSSWK 1469
Y E + L SFN QL AI A G SS K
Sbjct: 595 AILKPSPEQFPNYGEQTPTVPDCFTPSFAGHLHRSFNAPQLAAIHWAAMHTAAGTSSGVK 654
Query: 1470 KD--CELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCIN-----SRPKIG 1522
+ +L+QGPPGTGKT T+ +++ + + +Q Y+S + S ++
Sbjct: 655 RQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQ------YQQYYTSLLKKLAPESYKQVN 708
Query: 1523 QSAA--IARAWQDAALARQINXXXXXXXXXXXXXVRARVLICAQSNAAVDELVSRISKEG 1580
+S++ I D L N + R+L+CA SNAA DEL+SR+ G
Sbjct: 709 ESSSDNIVSGSIDEVLQ---NMDQNLFRTLPKLCAKPRMLVCAPSNAATDELLSRVLDRG 765
Query: 1581 LYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTL 1640
+ + Y+P + RVG V T + ++ D LA+ R + + R + L
Sbjct: 766 FIDGEMRVYRPDVARVG-VDTQTKAAQAVSVERRSDLLLAKSREEILGHIHNLRVRDAQL 824
Query: 1641 RSNLEKLVDRIRFFEAKRANTKDGNS--DPKN-MLDDEVHKGDDVKLSDVELEAKLRKLY 1697
++ L + A AN G+ DP M+ D+ +LS V +EA+ + L
Sbjct: 825 SQDIAGLKRELT--AAAFANRSQGSVGVDPDVLMVRDQTRDAMLQRLSAV-VEARDKDLV 881
Query: 1698 EQKKQIYRELGVAQVQEKKSYEETKALKHKLRKSILKEAEIVVTTLSGCGGDLY 1751
E + + E G + + EE +A L S EAEIV TT+S G L+
Sbjct: 882 EMSRLLIVE-GKFRAGTSFNLEEARA---SLEASFANEAEIVFTTVSSSGRKLF 931
Score = 63 (27.2 bits), Expect = 3.0e-21, Sum P(3) = 3.0e-21
Identities = 24/55 (43%), Positives = 26/55 (47%)
Query: 1728 LRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQ 1782
L S EAEIV TT+S G L+ S GF D VVIDEAAQ
Sbjct: 908 LEASFANEAEIVFTTVSSSGRKLF---SRLTHGF-----------DMVVIDEAAQ 948
Score = 52 (23.4 bits), Expect = 3.0e-21, Sum P(3) = 3.0e-21
Identities = 33/126 (26%), Positives = 54/126 (42%)
Query: 1005 IVVSDDEIEKEPSVDQGLLSDFKSRQCVVVSKTGAPISDKRASQTESLKNRVSILDSSKD 1064
+ ++ E VD+G L + K V + GAP ++ TES + SS D
Sbjct: 78 VAAQHTDVAVERKVDEGSLEEAKVTSLKVPNDVGAPEREE-GEWTESEVPANDNVHSSSD 136
Query: 1065 LLDGSGPASPKQVLDESVGKSLNSLDSKVVDGKKKESN--SKFNASDSLSFQN--RVGLR 1120
+ K + ++G +NS DS + +KK N S+ + DS S + GL
Sbjct: 137 Y----STVTEKD--NGTLGLDINS-DSAL---QKKNVNHISESSGKDSGSIDSPQEQGLT 186
Query: 1121 NKPVES 1126
+P E+
Sbjct: 187 VRPRET 192
Score = 38 (18.4 bits), Expect = 8.2e-20, Sum P(3) = 8.2e-20
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 752 EGHLPKCDLLKSSSGHSSIT 771
E +P D + SSS +S++T
Sbjct: 122 ESEVPANDNVHSSSDYSTVT 141
>TAIR|locus:2059088 [details] [associations]
symbol:AT2G19120 "AT2G19120" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA] GO:GO:0009506
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0004386 GO:GO:0004519
eggNOG:COG1112 EMBL:AC002392 KO:K10706 InterPro:IPR026852
PANTHER:PTHR10887:SF27 IPI:IPI00542366 PIR:T00533
RefSeq:NP_179502.1 UniGene:At.52824 ProteinModelPortal:O64476
SMR:O64476 PaxDb:O64476 PRIDE:O64476 EnsemblPlants:AT2G19120.1
GeneID:816429 KEGG:ath:AT2G19120 TAIR:At2g19120
HOGENOM:HOG000084788 InParanoid:O64476 OMA:DWAALIS PhylomeDB:O64476
ProtClustDB:CLSN2683158 ArrayExpress:O64476 Genevestigator:O64476
Uniprot:O64476
Length = 1090
Score = 275 (101.9 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 132/528 (25%), Positives = 216/528 (40%)
Query: 1245 KLKEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDF 1304
+L+ VP F+S E++V +F PL+ EE +AQL+S+++E++ E Y + + S+ER +
Sbjct: 253 ELRSVPERFESMEEYVRVFEPLLFEECRAQLYSTWVELA--EANTYVKVRIKSIERRERG 310
Query: 1305 HLVRFVHDDNDSVTSKIFSENDLVLLTRVSPQKTPHDVHMV-GKVXXXXXXXXXXXXILL 1363
++ N + + ++ + D V G V
Sbjct: 311 WYDVILNSLNGCKWAFKEGDVAVLSTPLPESDEDHEDAGRVAGTVRRHIPVDTRDPRGAT 370
Query: 1364 IRFYLQN-GSV--RLNQAR--RNLLERSKWHATLIMSITPQLREF---HAXXXXXXXXXX 1415
+ FY+ N G +++ + R L + WH T++ S+ RE+ HA
Sbjct: 371 LHFYVGNSGGTGSKIDDSHILRKLKPQDIWHLTVLGSLATTQREYVALHAFSRLNPQMQN 430
Query: 1416 XXXXXXVNVSRGYNESREL--DLGKLSQLQQILKTSFNESQLQAIS-----VAIGLSSSW 1468
Y E D S + L SFN QL AI A G SS
Sbjct: 431 AILNPSPEQFPSYEEQTPATPDCFTTSFVDH-LHRSFNAPQLAAIHWAAMHTAAGTSSGV 489
Query: 1469 KKD--CELSLIQGPPGTGKTRTIVAIVSA--LLATRTSPKSHLKQNYSSCINSRPKIGQS 1524
KK +L+QGPPGTGKT T+ +++ L+ + S LK+ N + S
Sbjct: 490 KKQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQQYYTSLLKKLAPETYNQANECSSS 549
Query: 1525 AAIARAWQDAALARQINXXXXXXXXXXXXXVRARVLICAQSNAAVDELVSRISKEGLYGS 1584
I D L N + R+L+CA SNAA DEL+SR+ G
Sbjct: 550 DNILSGSIDEVLQ---NMDHNLFRTLPKLCAKPRMLVCAPSNAATDELLSRVLDRGFIDG 606
Query: 1585 DGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNL 1644
+ + Y+P + RVG V + + ++ D LA R + + + + N+
Sbjct: 607 EMRVYRPDVARVG-VDSQSRAAQAVSVERRSDQLLAISRDEILRHMRNLRLQETQISQNI 665
Query: 1645 EKLVDRIRFFE-AKRANTKDGNSDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQI 1703
L + A R+ G DP+ ++ + + ++ +EA+ + L E + +
Sbjct: 666 AGLKRELNAAAFATRSQGSVG-VDPEVLISRDQKRDALLQHLAAVVEARDKVLVEISRLL 724
Query: 1704 YRELGVAQVQEKKSYEETKALKHKLRKSILKEAEIVVTTLSGCGGDLY 1751
E G + + EE +A L S EAEIV TT+S G L+
Sbjct: 725 IVE-GKFRAGNNFNLEEARA---SLEASFANEAEIVFTTVSSSGRKLF 768
>DICTYBASE|DDB_G0274399 [details] [associations]
symbol:DDB_G0274399 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR003593 SMART:SM00382
dictyBase:DDB_G0274399 GO:GO:0005524 GO:GO:0005634
EMBL:AAFI02000012 GO:GO:0004386 eggNOG:COG1112 RefSeq:XP_644230.1
ProteinModelPortal:Q86AS0 EnsemblProtists:DDB0237968 GeneID:8619659
KEGG:ddi:DDB_G0274399 OMA:LIMISLH Uniprot:Q86AS0
Length = 967
Score = 133 (51.9 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 1556 RARVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVG 1597
+ R+L+CA SN AVDE+VSR+ ++GL +DG+ Y P LVRVG
Sbjct: 461 KRRILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLVRVG 502
Score = 116 (45.9 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 35/113 (30%), Positives = 58/113 (51%)
Query: 1224 IDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMS 1283
ID F L D + +LK V V F + E +++ + PL+ EE +AQL S +E
Sbjct: 41 IDRFYKHILTWDASDLSPKEKELKPVKVSFNNEEDYITTYEPLLFEECRAQLERS-IEEG 99
Query: 1284 SWEDMYYGSLS-VLSVERVDDFHLVRFVHDDNDSVTSKIFSENDLVLLTRVSP 1335
+D +LS V + V+DF +V V +N ++ F +NDL++++ P
Sbjct: 100 EKDDTSEPTLSRVRYISEVNDFLVVGLVMAENVNIFQ--FHDNDLIMISLHHP 150
Score = 107 (42.7 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 39/144 (27%), Positives = 73/144 (50%)
Query: 1364 IRFYLQNGSVRLNQARR-NLLERSK--WHATLIMSITPQLREFHAXXXXXXXXXXXXXXX 1420
++FY++ ++ ++AR+ +LL R + W T + +++ REF A
Sbjct: 253 VKFYVKG--IKGDRARQVSLLLRYEIDWWTTKLCNLSTLQREFAALYQCSQSNFMKTLM- 309
Query: 1421 XVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGP 1480
+ G + + + L L +++N+SQL A++ A+ ++ ++LIQGP
Sbjct: 310 -MRDDDG-EDGIVMKIPPL--LHDQFSSTYNDSQLNALTSALEGNA-------ITLIQGP 358
Query: 1481 PGTGKTRTIVAIVSALLATRTSPK 1504
PGTGKT I+ ++S LL + PK
Sbjct: 359 PGTGKTHVILGLISVLLHSTIVPK 382
Score = 67 (28.6 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 1728 LRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1784
+R +L EA+IV TTLS G L ++ GF D V+IDEAAQ V
Sbjct: 555 IRTLVLDEADIVATTLSFSGASLL---TKMAGGF-----------DIVIIDEAAQAV 597
Score = 38 (18.4 bits), Expect = 7.4e-11, Sum P(4) = 7.4e-11
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 17 GIEEEEELDDGND 29
G++E+EE+ D D
Sbjct: 155 GMDEDEEMTDDED 167
>TAIR|locus:2130384 [details] [associations]
symbol:MAA3 "MAGATAMA 3" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009553 "embryo sac development"
evidence=IMP] [GO:0009875 "pollen-pistil interaction" evidence=IMP]
[GO:0010183 "pollen tube guidance" evidence=IMP] PROSITE:PS51198
GO:GO:0005524 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0004386 GO:GO:0009553 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:Z97339 GO:GO:0010183 EMBL:AL161542 EMBL:EU915246
IPI:IPI00522212 PIR:E71420 RefSeq:NP_193292.3 UniGene:At.33168
ProteinModelPortal:B6SFA4 SMR:B6SFA4 PaxDb:B6SFA4 PRIDE:B6SFA4
EnsemblPlants:AT4G15570.1 GeneID:827233 KEGG:ath:AT4G15570
GeneFarm:2417 TAIR:At4g15570 HOGENOM:HOG000030627 KO:K10706
OMA:TIMREFT PhylomeDB:B6SFA4 ProtClustDB:CLSN2680970
Genevestigator:B6SFA4 GO:GO:0009875 InterPro:IPR026852
PANTHER:PTHR10887:SF27 Uniprot:B6SFA4
Length = 818
Score = 122 (48.0 bits), Expect = 6.2e-14, Sum P(4) = 6.2e-14
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 1556 RARVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLV 1615
R RVL+CA SN+A+DE+V R+ GL + +TY P +VR+G +K H + +
Sbjct: 374 RLRVLVCAPSNSALDEIVLRLLSSGLRDENAQTYTPKIVRIG-LKAHHSVA-----SVSL 427
Query: 1616 DHRLAEERMHLTD-PK 1630
DH +A++R D PK
Sbjct: 428 DHLVAQKRGSAIDKPK 443
Score = 104 (41.7 bits), Expect = 6.2e-14, Sum P(4) = 6.2e-14
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 1438 KLS-QLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSAL 1496
K+S L + + N+SQ +AI V GLS +K LIQGPPGTGKT+TI++I+ A+
Sbjct: 245 KISGPLNEFFNENLNKSQKEAIDV--GLS---RKS--FVLIQGPPGTGKTQTILSILGAI 297
Query: 1497 L 1497
+
Sbjct: 298 M 298
Score = 83 (34.3 bits), Expect = 6.2e-14, Sum P(4) = 6.2e-14
Identities = 33/121 (27%), Positives = 57/121 (47%)
Query: 1217 WYKPILEIDYFATVGLASSREDENRVHCK--LKEVPVCFQSPEQFVSIFRPLVLEEFKAQ 1274
+Y IL DY L E +NR K L V ++ + + F PL+ EE KAQ
Sbjct: 19 FYNIILGWDYKQ---LTKENERKNRKDSKEKLNVVKNTYKDVDDYFETFEPLLFEEVKAQ 75
Query: 1275 LHSSFLEMSSWEDMYYGSLS-VLSVERVDDFH--LVRFVHDDNDSVTSKIFSENDLVLLT 1331
+ L+ E+ + V+ + FH LV + H++++ + ++NDL+LL+
Sbjct: 76 I----LQNKDGEEASVCKMRLVMECNEGEGFHFLLVTYEHEEDEYL-----AQNDLLLLS 126
Query: 1332 R 1332
+
Sbjct: 127 K 127
Score = 64 (27.6 bits), Expect = 6.2e-14, Sum P(4) = 6.2e-14
Identities = 23/57 (40%), Positives = 27/57 (47%)
Query: 1728 LRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1784
+R +IL+EA IV TLS G L N FD V+IDEAAQ V
Sbjct: 454 IRTAILEEAAIVFATLSFSGSALLA--------------KSNRGFDVVIIDEAAQAV 496
Score = 41 (19.5 bits), Expect = 9.2e-10, Sum P(4) = 9.2e-10
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 741 HFFFVLRKIFEEGHLPKCDLLKSSSGHSSITMFSSQGGF 779
HF V + E+ +L + DLL S F S GF
Sbjct: 103 HFLLVTYEHEEDEYLAQNDLLLLSKEEVKGNSFPSSYGF 141
>MGI|MGI:2443480 [details] [associations]
symbol:Setx "senataxin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR026121 MGI:MGI:2443480 GO:GO:0005524 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0007623 GO:GO:0006302
GO:GO:0004386 eggNOG:COG1112 GO:GO:0006369 KO:K10706 EMBL:AL772379
GeneTree:ENSGT00580000081652 CTD:23064 HOVERGEN:HBG108476
OrthoDB:EOG4XWFWX PANTHER:PTHR10887:SF15 EMBL:AL845267
EMBL:AK044730 EMBL:AK048354 EMBL:AK077911 EMBL:BC046382
EMBL:BC058109 EMBL:BC079604 EMBL:AK129177 EMBL:BK001523
IPI:IPI00421108 IPI:IPI00626271 RefSeq:NP_932150.2 UniGene:Mm.41867
ProteinModelPortal:A2AKX3 SMR:A2AKX3 DIP:DIP-56995N IntAct:A2AKX3
STRING:A2AKX3 PhosphoSite:A2AKX3 PaxDb:A2AKX3 PRIDE:A2AKX3
Ensembl:ENSMUST00000061578 Ensembl:ENSMUST00000129544 GeneID:269254
KEGG:mmu:269254 UCSC:uc008izm.1 InParanoid:A2AKX3 NextBio:392760
Bgee:A2AKX3 CleanEx:MM_SETX Genevestigator:A2AKX3 Uniprot:A2AKX3
Length = 2646
Score = 119 (46.9 bits), Expect = 8.6e-14, Sum P(9) = 8.6e-14
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 1450 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQ 1509
FNE Q +AI A + ++ LI GPPGTGK++TIV ++ LL T K H +
Sbjct: 1910 FNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLL-TENQRKGHSDE 1968
Query: 1510 NYSSCINSRPKIGQSAAIARAWQDAAL 1536
N+++ KI Q+ + A +AA+
Sbjct: 1969 NFNA------KIKQNRVLVCAPSNAAV 1989
Score = 110 (43.8 bits), Expect = 8.6e-14, Sum P(9) = 8.6e-14
Identities = 39/125 (31%), Positives = 60/125 (48%)
Query: 1558 RVLICAQSNAAVDELVSRIS---KEGLYGSD---GKTYKPYLVRVGNVKTVHPNSLPFFI 1611
RVL+CA SNAAVDEL+ +I KE G LVR+G K+++ L F +
Sbjct: 1978 RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINTEVLKFSL 2037
Query: 1612 DTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNM 1671
D+ V+HR+ ++ L E R L + L++L +RA + G +
Sbjct: 2038 DSQVNHRMKKD---LPSHIQEMLRRKEILDAQLDEL-------SRQRALCRGGREMQRQE 2087
Query: 1672 LDDEV 1676
LD+ +
Sbjct: 2088 LDEHI 2092
Score = 92 (37.4 bits), Expect = 8.6e-14, Sum P(9) = 8.6e-14
Identities = 43/183 (23%), Positives = 89/183 (48%)
Query: 98 EMQHCIQCVSQHHQAQE----MYSMEYESGVIGPLLDVLRSLDEERVTK---YLREINAR 150
++ +C++CV+++H+A++ ++ + +E + + +S+ E Y+ + N
Sbjct: 36 DLCYCLECVAEYHRARDEVPFLHEVLWELETLRLVSHFEKSMKAEAEDDDDLYIVDNNGE 95
Query: 151 LAHQEYYPQIDNNQVICIMYEVLMFPVLLDDQSLFTEFETFIEAVDNMHE--LALDGHQL 208
+ Q N++ ++E+L +P LL + + E +EA+ M + +
Sbjct: 96 EQLFDCSGQDFENKLRVPLFEILKYPYLLLHERVN---ELCVEALCRMEQNNCSFQVFDK 152
Query: 209 FPGVFALFFF--NRRVRTIGRRLARSMGKLRRAT--DLEPMQPLLKKFI--GFLET-EVL 261
+PG++ LF N VR AR++GK+ R DL+ + L K I G LE+ ++
Sbjct: 153 YPGIY-LFLVHPNEMVRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELGLLESPDIY 211
Query: 262 TST 264
TS+
Sbjct: 212 TSS 214
Score = 70 (29.7 bits), Expect = 4.0e-10, Sum P(9) = 4.0e-10
Identities = 43/190 (22%), Positives = 84/190 (44%)
Query: 1611 IDTLVDHRLAEERMHLTDPKNEF--CTRSSTLRSNLEKLVDR--IRFFEAKRANTKDGNS 1666
+D L+ + E + D KN C + +R EK ++ ++F + N +
Sbjct: 1989 VDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINTEVLKFSLDSQVNHRMKKD 2048
Query: 1667 DPKNMLDDEVHKGD--DVKLSDVELEAKL-RKLYE-QKKQIYRELGVA--QVQEKKS-YE 1719
P + + + + + + D +L ++ + L R E Q++++ + + + QE S +
Sbjct: 2049 LPSH-IQEMLRRKEILDAQLDELSRQRALCRGGREMQRQELDEHIAIVSKERQELASKIK 2107
Query: 1720 ETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDE 1779
E + + + +I+ E+ ++ TLS GG L ES + G P F V++DE
Sbjct: 2108 EVQGRPQRAQNTIILESHVICCTLSTSGGLLL----ESAFRGQGGVP-----FSCVIVDE 2158
Query: 1780 AAQVVLVHEL 1789
A Q V L
Sbjct: 2159 AGQSCEVETL 2168
Score = 69 (29.3 bits), Expect = 8.6e-14, Sum P(9) = 8.6e-14
Identities = 25/99 (25%), Positives = 46/99 (46%)
Query: 1247 KEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHL 1306
+ VPV FQ ++ ++F PL++ + +L + E+ Y L + +
Sbjct: 1712 RPVPVRFQDCAEYFNVFLPLIILNAFETVAQEWLSSPNKENFYQLQLRKFPADYKKYWEF 1771
Query: 1307 VRFVHDDNDSVTSKIF--SENDLVLLTRVSPQKTPHDVH 1343
+ ++ N+S +K ENDLV L +P+K+ D H
Sbjct: 1772 LIYL---NESELAKQLHPKENDLVFL---APEKSYMDRH 1804
Score = 57 (25.1 bits), Expect = 8.6e-14, Sum P(9) = 8.6e-14
Identities = 20/80 (25%), Positives = 35/80 (43%)
Query: 894 WKRTITCLLNLLKDSC-SG---TSLLTVSSIENLISSDHLDVDGLVEKVSLLCVSLSKES 949
W ITCL+N + SG T ++ VS+ E+ + + V + E S+ + S
Sbjct: 1414 WVTGITCLVNQCESRVLSGGVPTDVVMVSASEDPVDGGAVTVQ-VGEVASVKAAEPASSS 1472
Query: 950 SRNSGKTLMSMAHFPEDLSV 969
+ L H P+D+ +
Sbjct: 1473 DTDDDDNLFLTQHDPQDMDL 1492
Score = 49 (22.3 bits), Expect = 8.6e-14, Sum P(9) = 8.6e-14
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 365 KIHKDIFDLFPPFLQSLEALQD 386
++H F F PF+QSL L+D
Sbjct: 402 RVHNSTFLWFIPFVQSLMDLKD 423
Score = 47 (21.6 bits), Expect = 8.6e-14, Sum P(9) = 8.6e-14
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 502 MNEDEDDLKFPFDPDVDEK-DDNSSWNEFTAQSRITSQE 539
+ ED P DP +D+K ++ S N + I S+E
Sbjct: 828 LKEDSIGHNVPSDPVLDDKHEEQKSQNSSLFKKEIKSEE 866
Score = 47 (21.6 bits), Expect = 2.8e-13, Sum P(8) = 2.8e-13
Identities = 40/193 (20%), Positives = 70/193 (36%)
Query: 993 SETIASKSKDNLIVVSD-----DEIEKEPSVDQGLLSDFKS---RQCVVVSKTGAPISDK 1044
++ A+ + +IV+SD DE E E S + + K+ + C S +
Sbjct: 987 NQNSAATCRGQVIVISDSDEEEDEDEDERSSSEENIKQSKACIGKDCSEHRSLAVNASVE 1046
Query: 1045 RASQTESLKNRVSILDSSKDLLDGSGPASPKQVLDESVGKSLNSLDSK---VVDGKKKES 1101
+ E + V DS + + + V + S NSL + V +
Sbjct: 1047 KQLVKEEERYPVEFEDSESQVFEFESSSEVFSVWQDHKIDSKNSLQGEQKSYVTHVADST 1106
Query: 1102 NSKFNASDSLS---FQNRV-GLRNKPVESSSFKNVNQASSNVVAKPTNKLLKELVCDVEN 1157
N+ DS+S +N+ G++ SS + + V KP K ++ +
Sbjct: 1107 NNNLGCGDSVSEEVVRNKAEGVKEHAGPHSSV-SAEEFCKTGVKKPKRKRYDKVTAE--- 1162
Query: 1158 DPLESSFKSGKHQ 1170
DP S G Q
Sbjct: 1163 DPQRPSSSVGTDQ 1175
Score = 44 (20.5 bits), Expect = 0.00019, Sum P(8) = 0.00019
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 1465 SSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQS 1524
SSS K+ C+L+ + P + + + + S + T K LK Y +N K G
Sbjct: 1646 SSSSKQSCKLTFSENRPTSAASPVNILLPSQSIFD-TFIKEVLKWKYQMFLNF-DKCGAP 1703
Query: 1525 AAIARA 1530
++ ++
Sbjct: 1704 TSLCQS 1709
Score = 43 (20.2 bits), Expect = 2.0e-13, Sum P(9) = 2.0e-13
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 599 SATEISSTFGWKAPTGCDD-----GGAGKVSKNSMEVST--MCLPLIRAFKR 643
S T+ SS F + T +D G GK SK S ++ +C L K+
Sbjct: 743 SLTDSSSDFMEQVSTSNEDVSLKDGSVGKTSKPSFKLQKDEICAKLSHVIKK 794
Score = 43 (20.2 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 1098 KKESNSKFNASDSLSFQNRVGLRNKPVESSSFKNVNQASSN 1138
K++S + F S+S Q ++ ESSS+ N S N
Sbjct: 689 KQKSEALF--SESAQEQVKISAEKSGKESSSYAPSNSTSRN 727
Score = 43 (20.2 bits), Expect = 1.7e-12, Sum P(7) = 1.7e-12
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 1103 SKFNASDSLS-FQNRVGLRNKPVESSSFKNVNQASSNVVAKPTNKLLKELVC 1153
S + +DS S F +V N+ V S K+ S +KP+ KL K+ +C
Sbjct: 740 SAHSLTDSSSDFMEQVSTSNEDV---SLKD---GSVGKTSKPSFKLQKDEIC 785
Score = 40 (19.1 bits), Expect = 4.0e-11, Sum P(9) = 4.0e-11
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 1211 PPKLDDWYKPILEIDYFATVGLASSREDENRVHCKL---KEVPVCFQSPEQFV----SIF 1263
PP KP+ E+ + + ++ CKL + P SP + SIF
Sbjct: 1620 PPSSMGSQKPVAEVKSLCNIFHFQTPSSSSKQSCKLTFSENRPTSAASPVNILLPSQSIF 1679
Query: 1264 RPLVLE--EFKAQLHSSF 1279
+ E ++K Q+ +F
Sbjct: 1680 DTFIKEVLKWKYQMFLNF 1697
Score = 39 (18.8 bits), Expect = 2.8e-13, Sum P(8) = 2.8e-13
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 343 STLSPSVMRNTLLGQCFHTRSEKIHKDIFDLFPPFLQSLEALQD 386
S L S +N + HT ++ D D F P L + D
Sbjct: 255 SLLLGSDKQNDFMQSILHTMEKQSDDDSMDPFWPALHCFMVILD 298
Score = 39 (18.8 bits), Expect = 3.9e-12, Sum P(9) = 3.9e-12
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 1100 ESNSKFNASDSLSFQNRVGLRNKPVESSSFKNVN 1133
++N K S L FQ + R+ +KN +
Sbjct: 1325 KNNKKLLTSQDLQFQRLMRSRSHKKRDFDYKNTD 1358
Score = 38 (18.4 bits), Expect = 2.2e-13, Sum P(8) = 2.2e-13
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 482 VTSVLKSARPLRTETIISVEMNEDEDDLKFPFDPDVDEKDDNSSWNEFTAQSR 534
+T+ SA R + I+ + +E+ED+ DE D+ SS E QS+
Sbjct: 984 LTANQNSAATCRGQVIVISDSDEEEDE---------DE-DERSSSEENIKQSK 1026
Score = 37 (18.1 bits), Expect = 8.6e-14, Sum P(9) = 8.6e-14
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 680 DNVRQFGKCILEQVSNTRGLA 700
+N++Q CI + S R LA
Sbjct: 1020 ENIKQSKACIGKDCSEHRSLA 1040
Score = 37 (18.1 bits), Expect = 8.6e-14, Sum P(9) = 8.6e-14
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 317 DSPE-FSHAVSCLRELFKMLGYKLW 340
DS + F A+ C + LG K+W
Sbjct: 281 DSMDPFWPALHCFMVILDRLGSKVW 305
>POMBASE|SPBC29A10.10c [details] [associations]
symbol:SPBC29A10.10c "tRNA-splicing endonuclease
positive effector (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=ISO] [GO:0016180 "snRNA processing" evidence=ISO]
[GO:0035649 "Nrd1 complex" evidence=ISO] [GO:0043144 "snoRNA
processing" evidence=ISO] InterPro:IPR024714 PomBase:SPBC29A10.10c
GO:GO:0005524 GO:GO:0005634 EMBL:CU329671 GO:GO:0008033
eggNOG:COG1112 GO:GO:0006364 GO:GO:0004004 GO:GO:0006369
GO:GO:0043144 GO:GO:0016180 KO:K10706 GO:GO:0035649
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
OrthoDB:EOG4MPMZ6 PIR:T40065 RefSeq:NP_596055.1
ProteinModelPortal:O94387 EnsemblFungi:SPBC29A10.10c.1
GeneID:2540523 KEGG:spo:SPBC29A10.10c NextBio:20801650
Uniprot:O94387
Length = 1944
Score = 132 (51.5 bits), Expect = 1.0e-13, Sum P(4) = 1.0e-13
Identities = 45/157 (28%), Positives = 82/157 (52%)
Query: 1558 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDH 1617
++LICA SNAA+DE++ RI K G+Y +G + P ++RVG ++ ++ F TL +
Sbjct: 1333 KILICAPSNAAIDEILLRI-KAGVYDHEGIKFFPKVIRVGFGDSISVHAKEF---TLEEQ 1388
Query: 1618 RLAEERMHLTD-PKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEV 1676
+ ++M LT+ K++ SS R + ++ + R ++ R + + S KN E
Sbjct: 1389 MI--KQMELTNLKKDQEANNSSDTRKKYDSIIKK-R--DSLREDLEKFRSTGKNSSILEA 1443
Query: 1677 HKGDDVKLSDVELEAKLRKLYEQKKQIYRELGVAQVQ 1713
+ K ++ LE L + E+++ R L V + Q
Sbjct: 1444 QLREITKQKNM-LEQSLDDMRERQRSTNRNLDVLKKQ 1479
Score = 112 (44.5 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 38/151 (25%), Positives = 74/151 (49%)
Query: 1645 EKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDVKLSDVE-----------LEAKL 1693
E+++ ++ K+ + +SD + D + K D ++ D+E LEA+L
Sbjct: 1387 EQMIKQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSLR-EDLEKFRSTGKNSSILEAQL 1445
Query: 1694 RKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGV 1753
R++ +QK + + L + +++ + LK +++ +L+EA+IV TLS G +L +
Sbjct: 1446 REITKQKNMLEQSLDDMRERQRSTNRNLDVLKKQIQNQLLQEADIVCATLSASGHEL--L 1503
Query: 1754 CSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1784
+ ++ F V+IDEAAQ V
Sbjct: 1504 LNAGLT------------FRTVIIDEAAQAV 1522
Score = 92 (37.4 bits), Expect = 1.0e-13, Sum P(4) = 1.0e-13
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 1443 QQILKT-SFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLAT 1499
Q+I+K+ NE Q AI A ++ + +LIQGPPGTGKT+TI+ ++ A+L +
Sbjct: 1263 QKIMKSYGVNEPQAYAI-YASSVNDGF------TLIQGPPGTGKTKTILGMIGAVLTS 1313
Score = 91 (37.1 bits), Expect = 1.0e-13, Sum P(4) = 1.0e-13
Identities = 58/291 (19%), Positives = 116/291 (39%)
Query: 90 LLW--KRISGEMQHCIQCVSQHHQAQEMYS------MEYESGVIGPLLDVLRSLDEERVT 141
L+W K ++ +Q C +C+ ++HQ+ + + ++ + +++ + S D R+
Sbjct: 72 LVWFKKHLNERLQLCPKCIVKYHQSLDDFKSLCLNIFHFDPNTLEIVMEKIYSWDIFRLQ 131
Query: 142 KYLREINARLAHQEYYPQIDNNQ----VICIMYEVLMFPVLLDDQSLFTEFET-FIEAVD 196
+ L+ + P+ID + ++C YE+L P +L ++ +F F F+E+
Sbjct: 132 EVLKTV----------PKIDTSSASKPILCAFYEILYSPRILHNKEIFPLFRNRFLES-- 179
Query: 197 NMHELALDGHQLFPGVFALFFFNRRVRTIGRRLARSMGKLRRATDLEPMQPLLKKFIGFL 256
L+ + L PGV +L F R + R + ++ +D E K L
Sbjct: 180 GFLRLSKN---LVPGVISLLF--SRDDELRRWACSILSDVKTISDNE-----FK----IL 225
Query: 257 ETEVLTSTFKTSRPRARLKRLPIWLGITSXXXXXXXXXXXXGILERYPIFFDIVLNHISG 316
E +L + + + I+L S G+ + D +L+ +
Sbjct: 226 EGPLLQEIRSLDQKKENENEMQIFLKGLSLLLKHVDHLYFRGLTGKNFNVADFILSGLQS 285
Query: 317 DSPEFSHA-VSCLRELFKMLGYKLWLRSTLSPS-VMRNTLLGQCFHTRSEK 365
D + + CL L G W +SPS V+ G + +E+
Sbjct: 286 DHTNLCPSFLVCLHSLLYCYGRNFWTPE-ISPSEVIDKIFNGNAYKRWTEE 335
Score = 72 (30.4 bits), Expect = 1.0e-13, Sum P(4) = 1.0e-13
Identities = 108/520 (20%), Positives = 204/520 (39%)
Query: 909 CSGTSLLTVSSIENLISSDHL-DVDGLVEKVSLLCVSLSKESSRNSGKTLMSMAHFPEDL 967
C SL+TVS L S L V ++ K+ +C L S+N ++ + H
Sbjct: 759 CIADSLVTVSYWLKLTDSSLLTSVVKVICKMLKICKKLECPISQN----VIDIIHRASIT 814
Query: 968 SVERKSAALDIRPFPVKDVDVEILD--SETIASKSKDNLIVVSDDEIEKEPSVDQGLLSD 1025
S E+ R +D+ + + SE + + S N + +++ + D+GLLS
Sbjct: 815 SDEQTILTFTER----EDLFISLTPYLSEDVLNHSPFNDTNTLETKLQSD---DRGLLS- 866
Query: 1026 FKSRQCVVVSKTGAPISDKRASQTESLKNRVSILDSSKDLLDGSGPASPKQVLDESVGKS 1085
Q + ++K P S+ S L + + +SK + + A Q L+ KS
Sbjct: 867 --KDQTIGIAKK-LPESNISTSNHFLLPPKA--ISASKAI---NRNAQKSQNLNFL--KS 916
Query: 1086 LNSLDSKVVDGKKKESNSKFN-ASDSLSFQNRV--GLRN----KPVESSSFKNVNQASSN 1138
++ + K S N S+ L+ N + L+ P+ S + +++ SN
Sbjct: 917 KQETTQRIRESAKVPRTSAGNHLSEKLNSDNHIPKALQKLDSADPIRKPSLLHTSKSYSN 976
Query: 1139 VVAKPTNKLLKELVCDVENDPLESSFKSGKHQQTYLTKSGPFVPKRQVIQ------LKS- 1191
K T+ E + E + F + ++ +KS +P+R+ IQ LK+
Sbjct: 977 PDDKNTSTS-DEDTSESEEESSNGLFSLAREANSHASKS---LPQRRQIQFLDFDSLKTK 1032
Query: 1192 ----PFENRCGLHRMETGVKRFGPPKLDDWYKPILEIDYFATVGLASSREDENRVHCKLK 1247
P + R + + P + ++YK IL + A AS+ E + C
Sbjct: 1033 NVVHPTQLRRNTQQSAQLARLRLNPDVQEFYKVILGWNPLADSFSASNVE----MQCV-- 1086
Query: 1248 EVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVER--VDDFH 1305
+ + + +F+P++ E AQ+ S+ E+ Y + ++ R VD+F
Sbjct: 1087 QAKFTYNDSNAYEKVFKPMLFHECWAQVKSAV------EEKQYPPIDLILNTRSTVDNFV 1140
Query: 1306 LVRFVHDDNDSVTSKIFSENDLVLLTRVSPQKTPHDVHMVGKVXXXXXXXXXXXXILLIR 1365
+ F V+ S+ D+ LL++ ++ L +R
Sbjct: 1141 DIYFTSCSPTEVS--FLSDTDICLLSKSQSSGDTNNPKSFQLCKIQSISRKKESLELCLR 1198
Query: 1366 FYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHA 1405
++ S+ L + N+ ++ A + + T LREF A
Sbjct: 1199 MNIE--SIDLQEYAPNI----RFTAQKLFNATTSLREFAA 1232
Score = 37 (18.1 bits), Expect = 3.1e-10, Sum P(4) = 3.1e-10
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 1182 PKRQVIQLKSPFEN 1195
PK+ I KS FEN
Sbjct: 531 PKKVDIPFKSDFEN 544
>UNIPROTKB|E1BAS6 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654 GO:GO:0006302
GeneTree:ENSGT00580000081652 OMA:RLINHFE PANTHER:PTHR10887:SF15
EMBL:DAAA02032276 EMBL:DAAA02032274 EMBL:DAAA02032275
IPI:IPI00842535 Ensembl:ENSBTAT00000042924 Uniprot:E1BAS6
Length = 2662
Score = 117 (46.2 bits), Expect = 2.5e-13, Sum P(7) = 2.5e-13
Identities = 35/106 (33%), Positives = 54/106 (50%)
Query: 1431 SRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIV 1490
+++L ++ LK FNE Q +AI A + ++ LI GPPGTGK++TIV
Sbjct: 1906 TKDLPTATSERIVAYLK-DFNEDQKKAIETACAMVKHSPSVAKICLIHGPPGTGKSKTIV 1964
Query: 1491 AIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAAL 1536
I+ LL + ++ YS NS KI Q+ + A +AA+
Sbjct: 1965 GILYRLLT------ENQRRGYSD-ENSNAKIKQNRVLVCAPSNAAV 2003
Score = 112 (44.5 bits), Expect = 2.5e-13, Sum P(7) = 2.5e-13
Identities = 46/153 (30%), Positives = 72/153 (47%)
Query: 1558 RVLICAQSNAAVDELVSRIS---KEGLYGSD---GKTYKPYLVRVGNVKTVHPNSLPFFI 1611
RVL+CA SNAAVDEL+ +I KE G LVR+G K+++ L F +
Sbjct: 1992 RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPMGNCGDINLVRLGPEKSINNEVLKFSL 2051
Query: 1612 DTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNM 1671
D+ V+HR+ ++ L E R L L++L +RA + G +
Sbjct: 2052 DSQVNHRMKKD---LPSHVQEMHKRKEFLDHQLDEL-------SRQRALCRGGRESQRQE 2101
Query: 1672 LDDEVHKGDDVKLSDVELEAKLRKLY--EQKKQ 1702
LD ++ + V EL +K++++ QK Q
Sbjct: 2102 LDGKIAR---VSKERQELASKIKEVQGRPQKTQ 2131
Score = 98 (39.6 bits), Expect = 2.5e-13, Sum P(7) = 2.5e-13
Identities = 50/179 (27%), Positives = 87/179 (48%)
Query: 98 EMQHCIQCVSQHHQAQEMYSMEYESGVIGPLLDVLRSLDE-ERVTK---------YLREI 147
++ +C++CV+++H+A++ +E V+ L + LR ++ ER K Y+ +
Sbjct: 36 DLCYCLECVAEYHKARDELPFLHE--VLWEL-ETLRLINHFERSMKAEIGDDDELYIVDN 92
Query: 148 NARLAHQEYYPQIDNNQVICIMYEVLMFPVLLDDQSLFTEFETFIEAVDNMHELALDGHQ 207
N ++ Q N++ + E+L +P LL + + E +EA+ M E A Q
Sbjct: 93 NGEAQLFDFTGQDFENKLRVPLLEILKYPYLLLHEHVN---ELCVEALCRM-EQANCSFQ 148
Query: 208 LF---PGVFALFFF--NRRVRTIGRRLARSMGKLRRAT--DLEPMQPLLKKFIGFLETE 259
+F PG++ LF N VR AR++GK+ R DL+ + L K I FL E
Sbjct: 149 VFDKHPGIY-LFLVHPNEMVRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIVFLLLE 206
Score = 73 (30.8 bits), Expect = 1.2e-09, Sum P(7) = 1.2e-09
Identities = 45/191 (23%), Positives = 82/191 (42%)
Query: 1611 IDTLVDHRLAEERMHLTDPKNEF--CTRSSTLRSNLEKLVDR--IRFFEAKRANTKDGNS 1666
+D L+ + E + D KN C + +R EK ++ ++F + N +
Sbjct: 2003 VDELMKKIILEFKEKCKDKKNPMGNCGDINLVRLGPEKSINNEVLKFSLDSQVNHRMKKD 2062
Query: 1667 DPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYR-ELG--VAQVQEKKS-----Y 1718
P ++ E+HK + ++ ++ R L ++ R EL +A+V +++
Sbjct: 2063 LPSHV--QEMHKRKEFLDHQLDELSRQRALCRGGRESQRQELDGKIARVSKERQELASKI 2120
Query: 1719 EETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVID 1778
+E + K + I+ E+ I+ TLS GG L E+ + G P F V++D
Sbjct: 2121 KEVQGRPQKTQSIIILESHIICCTLSTSGGLLL----EAAFRGQGGVP-----FSCVIVD 2171
Query: 1779 EAAQVVLVHEL 1789
EA Q V L
Sbjct: 2172 EAGQSCEVETL 2182
Score = 61 (26.5 bits), Expect = 2.5e-13, Sum P(7) = 2.5e-13
Identities = 46/183 (25%), Positives = 74/183 (40%)
Query: 1097 KKKESNSKFNASDSLSFQNRVGLRNKPVES-----SSFKNVNQASSNVVAKPTNKLLKEL 1151
+ + S +K +S S S R+ +K +ES SS KN + + +V+ P L L
Sbjct: 1580 RSRPSTTKVFSSSSTS---RIAGLSKSLESTAALPSSLKNKSSGAQSVLKGPQPPLTVSL 1636
Query: 1152 VCDVENDPLESSFKSGKHQQTYLTKSGPFVPKRQVIQLKSPF-ENRCGLHRMETGVKRFG 1210
E L + F + QT P RQV+++ PF E+R L +
Sbjct: 1637 KPVAEVKGLCNVFPA----QT------PNNSNRQVLRV--PFGESRPFLTSSPVNILTSS 1684
Query: 1211 PPKLDDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPL-VLE 1269
D + K +L+ Y V + + VP+ FQ + ++F PL VL
Sbjct: 1685 QSISDTFVKEVLKWRYEMFVNFDQCGPPSSLCQSIERRVPIRFQDCGDYFNVFFPLMVLN 1744
Query: 1270 EFK 1272
F+
Sbjct: 1745 TFE 1747
Score = 53 (23.7 bits), Expect = 2.5e-13, Sum P(7) = 2.5e-13
Identities = 33/132 (25%), Positives = 56/132 (42%)
Query: 970 ERKSAALDIRPFPVKDVDVEI--LDSETIASKSKDNLIVVSDDEIEKEPSVDQGLLSDFK 1027
E K LD+ P ++ +DS+ + S ++ I +++ KEP V L D K
Sbjct: 865 EVKKEKLDLFSTPENSCQIQECHVDSKDLVSLTEMTSICMTNASPFKEP-VTGHELRDRK 923
Query: 1028 SRQCVVVSKTGAPISDKRAS-QTESLKNRVSILDSSKDLLDGSGPASPKQVLDESVGKSL 1086
+ + D +S Q ++L + S +D L AS + +S KSL
Sbjct: 924 ISRSTDQFSSNLREQDLSSSPQPDTLTD--SQVDRDLHKLSLIAQASVTKFPSDSTEKSL 981
Query: 1087 NSLDSKVVDGKK 1098
+ + KV D K+
Sbjct: 982 SQIQRKVKDEKR 993
Score = 49 (22.3 bits), Expect = 2.5e-13, Sum P(7) = 2.5e-13
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 365 KIHKDIFDLFPPFLQSLEALQD 386
++H F F PF+QSL L+D
Sbjct: 402 RVHNSTFLWFIPFVQSLMDLKD 423
Score = 49 (22.3 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 25/77 (32%), Positives = 34/77 (44%)
Query: 136 DEERVT---KYLREINARLAHQ--EYYPQIDNNQV---ICIMYEVLMFPVLL----DDQS 183
DEER+ K +RE+ A + + E + I N V + I E PV L + S
Sbjct: 1020 DEERILGLKKQMREVKACIEKECPEQHTSIANTNVEQKVLIKEEN---PVSLLEFEESDS 1076
Query: 184 LFTEFETFIEAVDNMHE 200
F EFET E H+
Sbjct: 1077 QFFEFETPCEVFSVWHD 1093
Score = 46 (21.3 bits), Expect = 4.5e-11, Sum P(7) = 4.5e-11
Identities = 46/189 (24%), Positives = 79/189 (41%)
Query: 1014 KEPSVDQGLLSDFKSRQCVVVSKTGAPISDKRASQTESLKNRVSILDSSKDLLDGSG-PA 1072
KE S G S+ K C+ + +P S K + ++ + + SIL + + ++ S P
Sbjct: 620 KEESEQIGKKSE-KDVHCL---ENSSPTSSKEPMKADAYQVQESILSKANNAIEESKEPY 675
Query: 1073 SPKQV-LD-----ESVGK-SLNSLDSKVVDGKKKESNSKFNA---SDSLSFQNRVGLRNK 1122
K + L+ ES K S +L + V + K S K+ + + S + QN LRN
Sbjct: 676 YIKDLKLEGHLSAESCLKLSSKNLACERVQNQVKISTGKYKSVKENSSCTPQNGT-LRNG 734
Query: 1123 PVESSSFKNVNQASSNVVAKPTNKLLKELVCD----VENDPL--ESSFKSGKHQQTYLTK 1176
P E + + + + T+ L K D ++ D L S KS H+ K
Sbjct: 735 P-EKVFDRGIIISRRLLTVSSTDSLEKVSASDEDFSLKEDGLGKSSKAKSKTHKDGVCAK 793
Query: 1177 SGPFVPKRQ 1185
+ K++
Sbjct: 794 LSHVIKKQR 802
Score = 44 (20.5 bits), Expect = 1.0e-11, Sum P(7) = 1.0e-11
Identities = 17/68 (25%), Positives = 28/68 (41%)
Query: 1180 FVPKRQVIQLKSPFENRCGLHRMETGVKRF-----GPPKLDDWYKPILEIDYFATVGLAS 1234
+VP+ + ++ FE R T V+ F PK + KPI E D +
Sbjct: 1126 YVPEEVIKKVAENFEERTKPRSSSTSVEEFCEIEVKKPKRRRYEKPIAE-DPLRPSSSSV 1184
Query: 1235 SREDENRV 1242
ED++ +
Sbjct: 1185 KNEDQSDI 1192
Score = 44 (20.5 bits), Expect = 7.0e-11, Sum P(6) = 7.0e-11
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 843 EILPVVFGKVCPLLAEHSGYSATTTQNVFDFKWLHDLMDW 882
++L V FG+ P L T++Q++ D ++ +++ W
Sbjct: 1660 QVLRVPFGESRPFLTSSPVNILTSSQSISD-TFVKEVLKW 1698
Score = 39 (18.8 bits), Expect = 5.2e-12, Sum P(7) = 5.2e-12
Identities = 36/161 (22%), Positives = 65/161 (40%)
Query: 914 LLTVSSIENLISSDHLDVDGLVEKVSLLCVSLSKESSRNSGKTLMSMAHFPEDLSVERKS 973
LLTVSS ++L D D +++ L S +K + G ++H + R+S
Sbjct: 749 LLTVSSTDSLEKVSASDEDFSLKEDGLGKSSKAKSKTHKDG-VCAKLSHVIK--KQRRRS 805
Query: 974 AALDIRPFPVKDVDVEILDSETIASKSKDNLIVVSDDEIEKEPS-VDQGLLSDF----KS 1028
+L+ V ++ + K N+ PS V G+L D KS
Sbjct: 806 ISLE-ENLTVSSIEGFYSKKDLGGQKGGGNIC---------NPSLVPNGILDDKNGEQKS 855
Query: 1029 RQCVVVSKTGAPISDKRASQTESLKNRVSILD---SSKDLL 1066
+ C+++ K + ++ + +N I + SKDL+
Sbjct: 856 QSCLLLKKK--EVKKEKLDLFSTPENSCQIQECHVDSKDLV 894
Score = 38 (18.4 bits), Expect = 2.5e-13, Sum P(7) = 2.5e-13
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 321 FSHAVSCLRELFKMLGYKLWLRSTLSPSVMRNTLLGQCFHTR 362
F A+ C + LG K+W + P T++ + R
Sbjct: 286 FWPALHCFMVILDRLGSKVW-GQLIDPIEAFQTIINNVSYNR 326
>UNIPROTKB|D4AEB3 [details] [associations]
symbol:Setx "Protein Setx" species:10116 "Rattus
norvegicus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] InterPro:IPR026121 RGD:1565575 GO:GO:0005737
GO:GO:0005654 GO:GO:0006302 KO:K10706 GeneTree:ENSGT00580000081652
CTD:23064 OMA:RLINHFE OrthoDB:EOG4XWFWX PANTHER:PTHR10887:SF15
IPI:IPI00476851 RefSeq:XP_342401.3 ProteinModelPortal:D4AEB3
PRIDE:D4AEB3 Ensembl:ENSRNOT00000017984 GeneID:362096
KEGG:rno:362096 NextBio:678646 ArrayExpress:D4AEB3 Uniprot:D4AEB3
Length = 2647
Score = 120 (47.3 bits), Expect = 4.5e-13, Sum P(7) = 4.5e-13
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 1450 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQ 1509
FNE Q +AI A + ++ LI GPPGTGK++TIV ++ LL T + K H +
Sbjct: 1911 FNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLL-TESQRKGHSDE 1969
Query: 1510 NYSSCINSRPKIGQSAAIARAWQDAAL 1536
N+++ KI Q+ + A +AA+
Sbjct: 1970 NFNA------KIKQNRVLVCAPSNAAV 1990
Score = 109 (43.4 bits), Expect = 4.5e-13, Sum P(7) = 4.5e-13
Identities = 39/125 (31%), Positives = 59/125 (47%)
Query: 1558 RVLICAQSNAAVDELVSRIS---KEGLYGSD---GKTYKPYLVRVGNVKTVHPNSLPFFI 1611
RVL+CA SNAAVDEL+ +I KE G LVR+G K+++ L F +
Sbjct: 1979 RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINTEVLKFSL 2038
Query: 1612 DTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNM 1671
D+ V HR+ ++ L E R L + L++L +RA + G +
Sbjct: 2039 DSQVSHRMKKD---LPSHIQEMLRRKEILDAQLDEL-------SRQRALCRGGREMQRQE 2088
Query: 1672 LDDEV 1676
LD+ +
Sbjct: 2089 LDEHI 2093
Score = 93 (37.8 bits), Expect = 4.5e-13, Sum P(7) = 4.5e-13
Identities = 43/183 (23%), Positives = 89/183 (48%)
Query: 98 EMQHCIQCVSQHHQAQE----MYSMEYESGVIGPLLDVLRSLDEERVTK---YLREINAR 150
++ +C++CV+++H+A++ ++ + +E + + +S+ E Y+ + N
Sbjct: 36 DLCYCLECVAEYHRARDEVPFLHEVLWELETLRLISHFEKSMKAEAEDDDELYIVDNNGE 95
Query: 151 LAHQEYYPQIDNNQVICIMYEVLMFPVLLDDQSLFTEFETFIEAVDNMHE--LALDGHQL 208
+ Q N++ ++E+L +P LL + + E +EA+ M + +
Sbjct: 96 EQLFDCSGQDFENRLRVPLFEILKYPYLLLHERVN---ELCVEALCRMEQNNCSFQVFDK 152
Query: 209 FPGVFALFFF--NRRVRTIGRRLARSMGKLRRAT--DLEPMQPLLKKFI--GFLET-EVL 261
+PG++ LF N VR AR++GK+ R DL+ + L K I G LE+ ++
Sbjct: 153 YPGIY-LFLVHPNEMVRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELGLLESPDIY 211
Query: 262 TST 264
TS+
Sbjct: 212 TSS 214
Score = 74 (31.1 bits), Expect = 4.5e-13, Sum P(7) = 4.5e-13
Identities = 78/357 (21%), Positives = 136/357 (38%)
Query: 1002 DNLIVVSDDEIEKEPSVDQGLLSDFKSRQCVVVS-KTGAPISDKRAS-QTESLKNRVSIL 1059
DNL + D P D L S ++ + ++V+ K D + Q ESL SI+
Sbjct: 1480 DNLFLTQHD-----PQ-DMDLCSQLENSKAIIVAHKDTVQREDSLSRPQLESL----SII 1529
Query: 1060 DSS-KDLLD---GSGPASPK----QVLDESVGKSLNSLDSKVVDGKKKESNSKFNASDSL 1111
KD ++ G PK + D+ V + L V + + F++S +
Sbjct: 1530 KCKYKDCVETTKNQGEYCPKHSEAKAADDDVFRK-PGLPLSVARSSRPTTTKIFSSSSAS 1588
Query: 1112 SFQNRVGLRNKPVESSSFKNVNQ-ASSNVVAKPTNKL-LKELVCDVENDPLESSFKSGKH 1169
N S+ KN + A SN+ P++ L ++ V +V++ L + F H
Sbjct: 1589 RTANLSKSLESTTLQSALKNKSSGAQSNLKMTPSSSLGSQKPVAEVKS--LCNIF----H 1642
Query: 1170 QQTYLTKSGPFVPKRQVIQLKSPF-ENRCGLHRMETGVKRFGPPKLDDWYKPILEIDYFA 1228
QT P +Q K F ENR + D + K +L+ Y
Sbjct: 1643 FQT------PSSSSKQ--SYKFTFSENRPASAASSVDILLPSQSIFDTFIKEVLKWKYQM 1694
Query: 1229 TVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDM 1288
+ + + VPV FQ ++ ++F PL++ + +L + E+
Sbjct: 1695 FLNFDKCGAPTSLCQSISRPVPVRFQDCAEYFNVFLPLIILNAFETVAQEWLNSPNKENF 1754
Query: 1289 YYGSLSVLSVERVDDFHLVRFVHDDNDSVTSKIFSENDLVLLTRVSPQKTPHDVHMV 1345
Y L + + + ++ ++++ ENDLV L P+K D H V
Sbjct: 1755 YQLHLRKFPADYKKYWEFLIYL-EESELAKQLHPKENDLVFLV---PEKKYMDRHSV 1807
Score = 65 (27.9 bits), Expect = 5.9e-09, Sum P(7) = 5.9e-09
Identities = 41/189 (21%), Positives = 79/189 (41%)
Query: 1611 IDTLVDHRLAEERMHLTDPKNEF--CTRSSTLRSNLEKLVD-RIRFFEAKRANTKDGNSD 1667
+D L+ + E + D KN C + +R EK ++ + F + D
Sbjct: 1990 VDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINTEVLKFSLDSQVSHRMKKD 2049
Query: 1668 PKNMLDDEVHKGD--DVKLSDVELEAKL----RKLYEQKKQIYRELGVAQVQEKKS-YEE 1720
+ + + + + + D +L ++ + L R++ Q+ + + + QE S +E
Sbjct: 2050 LPSHIQEMLRRKEILDAQLDELSRQRALCRGGREMQRQELDEHIVIVSKERQELASKIKE 2109
Query: 1721 TKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEA 1780
+ + + +I+ E+ ++ TLS GG L ES + G P F V++DEA
Sbjct: 2110 VQGRPQRAQNTIILESHVICCTLSTSGGLLL----ESAFRGQGGVP-----FSCVIVDEA 2160
Query: 1781 AQVVLVHEL 1789
Q V L
Sbjct: 2161 GQSCEVETL 2169
Score = 64 (27.6 bits), Expect = 3.9e-12, Sum P(7) = 3.9e-12
Identities = 54/233 (23%), Positives = 95/233 (40%)
Query: 894 WKRTITCLLNLLKDSC-SG---TSLLTVSSIENLISSDHLDVDGLVEKVSLLCVSLSKES 949
W ITCL+N + SG T +L S+ E+ + L V + E ++ S
Sbjct: 1416 WGTGITCLVNQCESRVLSGGVPTDVLMGSASEDPVGGGALTVQ-VGEVAAVRAAEPESSS 1474
Query: 950 SRNSGKTLMSMAHFPEDLSVERKSAALDIRPFPVKDVDVEILDSETIASKSKDNLIVVSD 1009
+ L H P+D+ + S + + V D + ++++ ++L ++
Sbjct: 1475 DTDDDDNLFLTQHDPQDMDL--CSQLENSKAIIVAHKDT-VQREDSLSRPQLESLSIIKC 1531
Query: 1010 DEIE-KEPSVDQGLL----SDFKSRQCVVVSKTGAPISDKRASQTESLKNRVSILDSSKD 1064
+ E + +QG S+ K+ V K G P+S R+S+ + K I SS
Sbjct: 1532 KYKDCVETTKNQGEYCPKHSEAKAADDDVFRKPGLPLSVARSSRPTTTK----IFSSSS- 1586
Query: 1065 LLDGSGPASPKQVLDESVGKSLNSLDSKVVDGKKKESNSKFNASDSLSFQNRV 1117
S A+ + L+ + +S +L +K +SN K S SL Q V
Sbjct: 1587 ---ASRTANLSKSLESTTLQS--ALKNK---SSGAQSNLKMTPSSSLGSQKPV 1631
Score = 49 (22.3 bits), Expect = 4.5e-13, Sum P(7) = 4.5e-13
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 365 KIHKDIFDLFPPFLQSLEALQD 386
++H F F PF+QSL L+D
Sbjct: 402 RVHNSTFLWFIPFVQSLMDLKD 423
Score = 43 (20.2 bits), Expect = 4.5e-13, Sum P(7) = 4.5e-13
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 599 SATEISSTFGWKAPTG-----CDDGGAGKVSKNSMEVST--MCLPLIRAFKR 643
S T+ SS F K T DG GK SK + +V +C L K+
Sbjct: 741 SLTDSSSDFLEKVSTSNGDVPLKDGTVGKTSKPNFKVQKDEICAKLSHVLKK 792
Score = 43 (20.2 bits), Expect = 3.7e-10, Sum P(7) = 3.7e-10
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 1100 ESNSKFNASDSLSFQNRVGLRNKPVESSSFKNVN--QASSNVV 1140
++N K S L FQ + R+ +KN + +A S VV
Sbjct: 1326 KNNKKLLTSQDLQFQRLMRSRSHQKRDFDYKNTDSVRAVSRVV 1368
Score = 39 (18.8 bits), Expect = 8.1e-13, Sum P(6) = 8.1e-13
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 343 STLSPSVMRNTLLGQCFHTRSEKIHKDIFDLFPPFLQSLEALQD 386
S L S +N + HT ++ D D F P L + D
Sbjct: 255 SLLLGSDKQNDFMQSILHTMEKQSDDDSMDPFWPALHCFMVILD 298
Score = 37 (18.1 bits), Expect = 4.5e-13, Sum P(7) = 4.5e-13
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 317 DSPE-FSHAVSCLRELFKMLGYKLW 340
DS + F A+ C + LG K+W
Sbjct: 281 DSMDPFWPALHCFMVILDRLGSKVW 305
>UNIPROTKB|Q7Z333 [details] [associations]
symbol:SETX "Probable helicase senataxin" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0007623 "circadian
rhythm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IC] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=TAS] InterPro:IPR026121 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008219 GO:GO:0006396 GO:GO:0006302 Orphanet:803
eggNOG:COG1112 GO:GO:0003678 KO:K10706 EMBL:AL159997 Orphanet:64753
EMBL:AY362728 EMBL:BX537849 EMBL:BX538166 EMBL:CR749249
EMBL:AL353701 EMBL:BC032600 EMBL:BC032622 EMBL:BC078166
EMBL:BC106017 EMBL:BC137350 EMBL:AB014525 EMBL:AK001456
EMBL:AK022902 IPI:IPI00142538 IPI:IPI00646645 IPI:IPI00719643
RefSeq:NP_055861.3 UniGene:Hs.460317 ProteinModelPortal:Q7Z333
SMR:Q7Z333 IntAct:Q7Z333 STRING:Q7Z333 PhosphoSite:Q7Z333
DMDM:296453021 PaxDb:Q7Z333 PRIDE:Q7Z333 Ensembl:ENST00000224140
Ensembl:ENST00000372169 Ensembl:ENST00000393220
Ensembl:ENST00000436441 GeneID:23064 KEGG:hsa:23064 UCSC:uc004cbj.3
UCSC:uc004cbk.3 UCSC:uc010mzt.3 CTD:23064 GeneCards:GC09M135136
HGNC:HGNC:445 HPA:HPA024105 MIM:602433 MIM:606002 MIM:608465
neXtProt:NX_Q7Z333 PharmGKB:PA24751 HOVERGEN:HBG108476
InParanoid:Q7Z333 OMA:RLINHFE OrthoDB:EOG4XWFWX PhylomeDB:Q7Z333
ChiTaRS:SETX GenomeRNAi:23064 NextBio:44145 ArrayExpress:Q7Z333
Bgee:Q7Z333 Genevestigator:Q7Z333 GermOnline:ENSG00000107290
PANTHER:PTHR10887:SF15 Uniprot:Q7Z333
Length = 2677
Score = 117 (46.2 bits), Expect = 4.9e-13, Sum P(7) = 4.9e-13
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 1450 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQ 1509
FNE Q +AI A + ++ LI GPPGTGK++TIV ++ LL T K H +
Sbjct: 1934 FNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLL-TENQRKGHSDE 1992
Query: 1510 NYSSCINSRPKIGQSAAIARAWQDAAL 1536
N S KI Q+ + A +AA+
Sbjct: 1993 N------SNAKIKQNRVLVCAPSNAAV 2013
Score = 112 (44.5 bits), Expect = 4.9e-13, Sum P(7) = 4.9e-13
Identities = 47/153 (30%), Positives = 71/153 (46%)
Query: 1558 RVLICAQSNAAVDELVSRIS---KEGLYGSD---GKTYKPYLVRVGNVKTVHPNSLPFFI 1611
RVL+CA SNAAVDEL+ +I KE G LVR+G K+++ L F +
Sbjct: 2002 RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINSEVLKFSL 2061
Query: 1612 DTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNM 1671
D+ V+HR+ +E L R L L++L +RA + G +
Sbjct: 2062 DSQVNHRMKKE---LPSHVQAMHKRKEFLDYQLDEL-------SRQRALCRGGREIQRQE 2111
Query: 1672 LDDEVHKGDDVKLSDVELEAKLRKLY--EQKKQ 1702
LD+ + K V EL +K++++ QK Q
Sbjct: 2112 LDENISK---VSKERQELASKIKEVQGRPQKTQ 2141
Score = 94 (38.1 bits), Expect = 4.9e-13, Sum P(7) = 4.9e-13
Identities = 51/187 (27%), Positives = 93/187 (49%)
Query: 98 EMQHCIQCVSQHHQAQEMYSMEYESGVIGPLLDVLRSLDE-ERVTK---------YLREI 147
++ +C++CV+++H+A++ +E V+ L + LR ++ E+ K Y+ +
Sbjct: 36 DLCYCLECVAEYHKARDELPFLHE--VLWEL-ETLRLINHFEKSMKAEIGDDDELYIVDN 92
Query: 148 NARLAHQEYYPQIDNNQVICIMYEVLMFPVLLDDQSLFTEFETFIEAVDNMHELALDGHQ 207
N + + Q N++ + E+L +P LL + + E +EA+ M E A Q
Sbjct: 93 NGEMPLFDITGQDFENKLRVPLLEILKYPYLLLHERVN---ELCVEALCRM-EQANCSFQ 148
Query: 208 LF---PGVFALFFF--NRRVRTIGRRLARSMGKLRRAT--DLEPMQPLLKKFI--GFLET 258
+F PG++ LF N VR AR++GK+ R DL+ + L K I G LE+
Sbjct: 149 VFDKHPGIY-LFLVHPNEMVRRWAILTARNLGKVDRDDYYDLQEVLLCLFKVIELGLLES 207
Query: 259 -EVLTST 264
++ TS+
Sbjct: 208 PDIYTSS 214
Score = 72 (30.4 bits), Expect = 2.9e-09, Sum P(7) = 2.9e-09
Identities = 45/186 (24%), Positives = 82/186 (44%)
Query: 1611 IDTLVDHRLAEERMHLTDPKNEF--CTRSSTLRSNLEKLVDR--IRFFEAKRANTKDGNS 1666
+D L+ + E + D KN C + +R EK ++ ++F + N +
Sbjct: 2013 VDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINSEVLKFSLDSQVNHRMKKE 2072
Query: 1667 DPKNMLDDEVHKGDDVKLSDVELE--AKLRKLYEQKKQIYR-EL--GVAQVQEKKS---- 1717
P ++ +HK + D +L+ ++ R L ++I R EL +++V +++
Sbjct: 2073 LPSHV--QAMHKRKE--FLDYQLDELSRQRALCRGGREIQRQELDENISKVSKERQELAS 2128
Query: 1718 -YEETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVV 1776
+E + K + I+ E+ I+ TLS GG L ES + G P F V+
Sbjct: 2129 KIKEVQGRPQKTQSIIILESHIICCTLSTSGGLLL----ESAFRGQGGVP-----FSCVI 2179
Query: 1777 IDEAAQ 1782
+DEA Q
Sbjct: 2180 VDEAGQ 2185
Score = 58 (25.5 bits), Expect = 4.9e-13, Sum P(7) = 4.9e-13
Identities = 26/127 (20%), Positives = 54/127 (42%)
Query: 1215 DDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPL-VLEEFKA 1273
D + K +L+ Y + + + VPV F + + ++F PL VL F+
Sbjct: 1699 DTFVKEVLKWKYEMFLNFGQCGPPASLCQSISRPVPVRFHNYGDYFNVFFPLMVLNTFET 1758
Query: 1274 QLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHLVRFVHDDNDSVTSKIF-SENDLVLLT- 1331
+ +L + E+ Y + + + + V+ + + +++ ENDLV L
Sbjct: 1759 -VAQEWLNSPNRENFYQLQVRKFPADYIKYWEFA--VYLEECELAKQLYPKENDLVFLAP 1815
Query: 1332 -RVSPQK 1337
R++ +K
Sbjct: 1816 ERINEEK 1822
Score = 49 (22.3 bits), Expect = 4.9e-13, Sum P(7) = 4.9e-13
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 365 KIHKDIFDLFPPFLQSLEALQD 386
++H F F PF+QSL L+D
Sbjct: 402 RVHNSTFLWFIPFVQSLMDLKD 423
Score = 49 (22.3 bits), Expect = 4.9e-13, Sum P(7) = 4.9e-13
Identities = 34/148 (22%), Positives = 59/148 (39%)
Query: 1037 TGAPISDKRASQTESLKNRVSILD-SSKDLLD-GSGPASPKQV-LDESVGKSLNSLD-SK 1092
T + +R + +S KNR + D S D+ GS A + + ES N ++
Sbjct: 1344 TSQELQMQRQIRPKSQKNRRRLSDCESTDVKRAGSHTAQNSDIFVPESDRSDYNCTGGTE 1403
Query: 1093 VVDGKKKESNSKFNASDSLSFQNRVGLRNKPVESSSFKNVNQASSNVV--AKPTNKLLKE 1150
V+ ++ K S+ + + + G P + +NQ S V+ PTN E
Sbjct: 1404 VLANSNRKQLIKCMPSEPETIKAKHG---SPATDDACP-LNQCDSVVLNGTVPTN----E 1455
Query: 1151 LVCDVENDPLESSFKSGKHQQTYLTKSG 1178
++ DPL + +H + K G
Sbjct: 1456 VIVSTSEDPLGGGDPTARHIEMAALKEG 1483
Score = 46 (21.3 bits), Expect = 4.9e-13, Sum P(7) = 4.9e-13
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 317 DSPE-FSHAVSCLRELFKMLGYKLWLRSTLSPSVMRNTLLGQCFHTR 362
DS + F A+ C + LG K+W + P V T++ + R
Sbjct: 281 DSVDPFWPALHCFMVILDRLGSKVW-GQLMDPIVAFQTIINNASYNR 326
Score = 46 (21.3 bits), Expect = 9.5e-13, Sum P(7) = 9.5e-13
Identities = 39/168 (23%), Positives = 59/168 (35%)
Query: 944 SLSKESSRNSGKTLMSMAHFPEDLSVERKSAALDIRPFPVKDVDVEILDSETIASKSKDN 1003
S +KE S GKT H +E S P V+D V I TI + +
Sbjct: 618 SYNKEESEQMGKTSRKDMH-----CLEASSPTFSKEPMKVQD-SVLIKADNTIEGDNNEQ 671
Query: 1004 LIVVSDDEIEKEPSVDQGLLSDFKSRQCVVVSKTGAPISDKRASQTESLKNRVSILDSSK 1063
+ D ++E L K+ + + I Q +S+K S + K
Sbjct: 672 NYI-KDVKLEDHLLAGSCLKQSSKN---IFTERAEDQIKISTRKQ-KSVKEISSY--TPK 724
Query: 1064 DLLDGSGPASPKQVLDESVGKSLNSLDSKVVDGKKK--ESNSKFNASD 1109
D +GP ++ D + S L D +K SN F+ D
Sbjct: 725 DCTSRNGP---ERGCDRGIIVSTRLLTDSSTDALEKVSTSNEDFSLKD 769
Score = 38 (18.4 bits), Expect = 8.0e-12, Sum P(6) = 8.0e-12
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 343 STLSPSVMRNTLLGQCFHTRSEKIHKDIFDLFPPFLQSLEALQD 386
S L S +N + HT + D D F P L + D
Sbjct: 255 SLLLGSDKQNDFMQSILHTMEREADDDSVDPFWPALHCFMVILD 298
>UNIPROTKB|F1PHA4 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006302 "double-strand break repair"
evidence=IEA] InterPro:IPR026121 GO:GO:0006302
GeneTree:ENSGT00580000081652 OMA:RLINHFE PANTHER:PTHR10887:SF15
EMBL:AAEX03006816 EMBL:AAEX03006817 Ensembl:ENSCAFT00000031656
Uniprot:F1PHA4
Length = 2531
Score = 117 (46.2 bits), Expect = 6.5e-13, Sum P(7) = 6.5e-13
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 1450 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQ 1509
FNE Q +AI A + ++ LI GPPGTGK++TIV ++ LL T K H +
Sbjct: 1957 FNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLL-TENQRKGHSDE 2015
Query: 1510 NYSSCINSRPKIGQSAAIARAWQDAAL 1536
N S KI Q+ + A +AA+
Sbjct: 2016 N------SNAKIKQNRVLVCAPSNAAV 2036
Score = 115 (45.5 bits), Expect = 6.5e-13, Sum P(7) = 6.5e-13
Identities = 47/153 (30%), Positives = 73/153 (47%)
Query: 1558 RVLICAQSNAAVDELVSRIS---KEGLYGSD---GKTYKPYLVRVGNVKTVHPNSLPFFI 1611
RVL+CA SNAAVDEL+ +I KE G LVR+G K+++ L F +
Sbjct: 2025 RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINNEVLKFSL 2084
Query: 1612 DTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNM 1671
D+ V+HR+ ++ L E R L L++L +RA + G +
Sbjct: 2085 DSQVNHRMKKD---LPSHVQEMHRRKEFLDRQLDEL-------SRQRALCRGGREIQRQE 2134
Query: 1672 LDDEVHKGDDVKLSDVELEAKLRKLY--EQKKQ 1702
LD+++ K V EL +K++++ QK Q
Sbjct: 2135 LDEKIAK---VSKERQELASKIKEVQGRPQKTQ 2164
Score = 98 (39.6 bits), Expect = 6.5e-13, Sum P(7) = 6.5e-13
Identities = 51/187 (27%), Positives = 93/187 (49%)
Query: 98 EMQHCIQCVSQHHQAQEMYSMEYESGVIGPLLDVLRSLDE-ERVTK---------YLREI 147
++ +C++CV+++H+A++ +E V+ L + LR ++ E+ K Y+ +
Sbjct: 43 DLCYCLECVTEYHKARDELPFLHE--VLWEL-ETLRLINHFEKSMKAEIGDDDELYIVDN 99
Query: 148 NARLAHQEYYPQIDNNQVICIMYEVLMFPVLLDDQSLFTEFETFIEAVDNMHELALDGHQ 207
N ++ Q N++ + E+L +P LL + + E +EA+ M E A Q
Sbjct: 100 NGEAQLFDFTGQDFENKLRVPLLEILKYPYLLLHERVS---ELCVEALCRM-EQANCSFQ 155
Query: 208 LF---PGVFALFFF--NRRVRTIGRRLARSMGKLRRAT--DLEPMQPLLKKFI--GFLET 258
+F PG++ LF N VR AR++GK+ R DL+ + L K I G LE+
Sbjct: 156 VFDKHPGIY-LFLVHPNEMVRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELGLLES 214
Query: 259 -EVLTST 264
++ TS+
Sbjct: 215 PDIYTSS 221
Score = 78 (32.5 bits), Expect = 2.0e-09, Sum P(7) = 2.0e-09
Identities = 45/191 (23%), Positives = 83/191 (43%)
Query: 1611 IDTLVDHRLAEERMHLTDPKNEF--CTRSSTLRSNLEKLVDR--IRFFEAKRANTKDGNS 1666
+D L+ + E + D KN C + +R EK ++ ++F + N +
Sbjct: 2036 VDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINNEVLKFSLDSQVNHRMKKD 2095
Query: 1667 DPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYR-ELG--VAQVQEKKS-----Y 1718
P ++ E+H+ + ++ ++ R L ++I R EL +A+V +++
Sbjct: 2096 LPSHV--QEMHRRKEFLDRQLDELSRQRALCRGGREIQRQELDEKIAKVSKERQELASKI 2153
Query: 1719 EETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVID 1778
+E + K + I+ E+ ++ TLS GG L ES + G P F V++D
Sbjct: 2154 KEVQGRPQKTQSIIILESHVICCTLSTSGGLLL----ESAFRGQGGVP-----FSCVIVD 2204
Query: 1779 EAAQVVLVHEL 1789
EA Q V L
Sbjct: 2205 EAGQSCEVETL 2215
Score = 58 (25.5 bits), Expect = 6.5e-13, Sum P(7) = 6.5e-13
Identities = 28/118 (23%), Positives = 47/118 (39%)
Query: 1215 DDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPL-VLEEFKA 1273
D + K IL+ Y V + + VPV FQ + ++F PL +L F+
Sbjct: 1722 DTFVKEILKWKYEMFVNFDQCGPPASLCQSISRPVPVRFQDCGDYFNVFFPLMILNTFET 1781
Query: 1274 QLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHLVRFVHDDNDSVTSKIF-SENDLVLL 1330
+ ++ + E Y L + + V VH + + ++ ENDLV L
Sbjct: 1782 -VAQEWISSPNKEKFYQLHLRKFPADYKKYWEFV--VHLEECELAKQLHPKENDLVFL 1836
Score = 49 (22.3 bits), Expect = 6.5e-13, Sum P(7) = 6.5e-13
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 365 KIHKDIFDLFPPFLQSLEALQD 386
++H F F PF+QSL L+D
Sbjct: 409 RVHNSTFLWFIPFVQSLMDLKD 430
Score = 46 (21.3 bits), Expect = 6.5e-13, Sum P(7) = 6.5e-13
Identities = 27/110 (24%), Positives = 48/110 (43%)
Query: 915 LTVSSIENLIS-SDHLDVDGLVE-KVSLLCVSLSKESSRNSGKTLMSM-AHFPEDL---S 968
L+ S++ L+ DH G+V+ + +S S RN+ K L S F + S
Sbjct: 1321 LSQRSLDYLVQLRDHGKTVGVVDTRKKTKLISPQTLSVRNNKKLLTSQDLQFRRQMRPKS 1380
Query: 969 VERKSAALDIR--------PFPVKDVDVEILDSETIASKSKDNLIVVSDD 1010
+ K LD P P ++ D+ + +S++ SK VV+++
Sbjct: 1381 QQNKKGLLDYESKETTRAGPRPAQNSDILVPESDSSDYSSKGGTEVVANN 1430
Score = 43 (20.2 bits), Expect = 1.3e-12, Sum P(7) = 1.3e-12
Identities = 23/107 (21%), Positives = 50/107 (46%)
Query: 983 VKDVDVEILDSETIASKSKDNLIVV-SDDEIEKEPSVDQGLLSDFKSRQCV--VVSKTGA 1039
+KD+ +E L +E+ +S +L + D+++ + + + SR + S+ G
Sbjct: 685 IKDLKLEDLSAESCIKQSSKSLFTERAQDQVKISTEKPKSVKENCTSRSVLQNFTSRNG- 743
Query: 1040 PISDKRASQTESLKNRVSILDSSKDLLDGSGPASPK-QVLDESVGKS 1085
P +RA + + ++ DSS D L+ ++ D+ +GK+
Sbjct: 744 P---ERACDRGIITHLLT--DSSTDSLEKMSTSNEDFSFKDDVLGKT 785
Score = 41 (19.5 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 1435 DLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDC-ELSLIQG-PPGTGKTRTIVAI 1492
DL S ++Q K+ F E + ++ S K++C S++Q G R
Sbjct: 692 DLSAESCIKQSSKSLFTERAQDQVKISTEKPKSVKENCTSRSVLQNFTSRNGPERACDRG 751
Query: 1493 VSALLATRTSPKSHLKQNYSS 1513
+ L T +S S K + S+
Sbjct: 752 IITHLLTDSSTDSLEKMSTSN 772
Score = 39 (18.8 bits), Expect = 6.5e-13, Sum P(7) = 6.5e-13
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 317 DSPE-FSHAVSCLRELFKMLGYKLWLRSTLSPSVMRNTLLGQCFHTR 362
DS + F A+ C + LG K+W + P T++ + R
Sbjct: 288 DSVDPFWPALHCFMVILDRLGSKVW-GQRIDPIEAFQTIINNVSYNR 333
Score = 38 (18.4 bits), Expect = 2.4e-12, Sum P(6) = 2.4e-12
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 343 STLSPSVMRNTLLGQCFHTRSEKIHKDIFDLFPPFLQSLEALQD 386
S L S +N + HT + D D F P L + D
Sbjct: 262 SLLLGSDKQNDFMQSILHTMERQADDDSVDPFWPALHCFMVILD 305
Score = 37 (18.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 132 LRSLDEERVTKYLREIN 148
L + ER+ YLR+ N
Sbjct: 1942 LLTTTSERIVAYLRDFN 1958
>UNIPROTKB|E1C4T7 [details] [associations]
symbol:Gga.18015 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654
GO:GO:0006302 GeneTree:ENSGT00580000081652 OMA:RLINHFE
PANTHER:PTHR10887:SF15 EMBL:AADN02026516 IPI:IPI00575045
Ensembl:ENSGALT00000005801 Uniprot:E1C4T7
Length = 2503
Score = 139 (54.0 bits), Expect = 7.7e-13, Sum P(7) = 7.7e-13
Identities = 78/317 (24%), Positives = 127/317 (40%)
Query: 1242 VHCKLKEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDM-YYGSLSVLSVER 1300
V + VP+ FQ + + F PL++ L ++E +D YY L
Sbjct: 1750 VQSVVASVPIRFQGYNDYFNTFFPLMMLNAFETLAQEWVENQKMKDKTYYLHLQNFCA-- 1807
Query: 1301 VDDFHLVRFV-HDDNDSVTSKIF-SENDLVLLT-----RVSPQKTPHDVHMVGKVXXXXX 1353
D + F+ + + +T ++ E+DL+ L V + + H+V V
Sbjct: 1808 --DLNTAEFIGYFEETDLTKQLHPKEDDLIFLVGQKKKNVFGEDREVEDHLVNHVGLVRR 1865
Query: 1354 XXXXXXXILLIRFYLQNGSVRLN-QARRNL--LERSKWHATLIMSITPQLREFHAXXXXX 1410
L R Q+ L+ Q R NL ++ ++ S+ P R F
Sbjct: 1866 FSRASG--CLTRQNDQHTVCHLSVQTRGNLSFFVNNEVKCMVVGSLVPTQRSFKGLLLLS 1923
Query: 1411 XXXXXXXXXXXVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKK 1470
+N S Y++ DL S+ +NE Q +AI A +
Sbjct: 1924 RSPLAKPI---INPS--YSDFCPRDLPVSSESATFCMNEYNEDQKRAIETAYAMVKQHPG 1978
Query: 1471 DCELSLIQGPPGTGKTRTIVAIVSALLA--TR---TSPKS-HLKQN-YSSCINSRPKIGQ 1523
++ LI GPPGTGK++TIV ++S +L TR TS K+ +KQN + C S I +
Sbjct: 1979 LAKICLIHGPPGTGKSKTIVGLLSRVLRENTRNEKTSKKNAKIKQNRFLVCAPSNAAIDE 2038
Query: 1524 -SAAIARAWQDAALARQ 1539
I A+++ RQ
Sbjct: 2039 LMKKIIIAFKEKCQNRQ 2055
Score = 93 (37.8 bits), Expect = 7.7e-13, Sum P(7) = 7.7e-13
Identities = 41/153 (26%), Positives = 70/153 (45%)
Query: 1558 RVLICAQSNAAVDELVSRIS---KEGLYGSD---GKTYKPYLVRVGNVKTVHPNSLPFFI 1611
R L+CA SNAA+DEL+ +I KE G LVR+G ++++ F +
Sbjct: 2025 RFLVCAPSNAAIDELMKKIIIAFKEKCQNRQEPLGNCGDIKLVRLGAERSINSEVRAFSL 2084
Query: 1612 DTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNM 1671
D V+HR+ + TD + + + L L+ L +RA + M
Sbjct: 2085 DKQVEHRMKRKP---TDRDQDIQKKKAALDEKLDML-------SRQRAMHRCYRFLRSQM 2134
Query: 1672 LDDEVHKGDDVKLSDVELEAKLRKL--YEQKKQ 1702
LDDE+ + + +L ++L+++ + QK Q
Sbjct: 2135 LDDEIGR---LSKERQQLASQLKEVRGHSQKVQ 2164
Score = 92 (37.4 bits), Expect = 7.7e-13, Sum P(7) = 7.7e-13
Identities = 44/177 (24%), Positives = 82/177 (46%)
Query: 98 EMQHCIQCVSQHHQAQEMYS------MEYE-SGVIGPLLDVLRSLDEERVTKYLREINAR 150
++ +C++CV ++H+A+E +E E S ++ + +R E ++ + N
Sbjct: 37 DLCYCLECVVEYHKAREKLPSLHQVLLELETSRLVAHIEKSIREEAGEDDELFIVDENGE 96
Query: 151 LAHQEYY-PQIDNNQVICIMYEVLMFPVLLDDQSLFTEFETFIEAVDNMHE--LALDGHQ 207
Y P +NN + ++ EVL +P LL + + E +E + M E + +
Sbjct: 97 TQLPVYVGPDFENNLRVPLL-EVLKYPYLLLHEKVS---ELCVEVLCRMEENHTSFQVFE 152
Query: 208 LFPGVFALFFF--NRRVRTIGRRLARSMGKLRRAT--DLEPMQPLLKKFI--GFLET 258
+PG++ LF N +R AR++GK+ R DL+ + L K I G E+
Sbjct: 153 KYPGIY-LFLVHPNEVIRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELGLFES 208
Score = 67 (28.6 bits), Expect = 2.1e-10, Sum P(7) = 2.1e-10
Identities = 37/165 (22%), Positives = 70/165 (42%)
Query: 1634 CTRSSTLRSNLEKLVD-RIRFFEAKRANTKDGNSDPKNMLDDEVHKGD---DVKLSDVEL 1689
C +R E+ ++ +R F + P + D ++ K D KL +
Sbjct: 2061 CGDIKLVRLGAERSINSEVRAFSLDKQVEHRMKRKPTDR-DQDIQKKKAALDEKLDMLSR 2119
Query: 1690 EAKLRKLYE--QKKQIYRELGVAQVQEKKSYEETKALK-H--KLRKSILKEAEIVVTTLS 1744
+ + + Y + + + E+G + ++ + K ++ H K++ I+ E++I+ TLS
Sbjct: 2120 QRAMHRCYRFLRSQMLDDEIGRLSKERQQLASQLKEVRGHSQKVQTDIILESDIICCTLS 2179
Query: 1745 GCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVVLVHEL 1789
GG L ES + +P F V++DEA Q V L
Sbjct: 2180 TSGGGLL----ESAFWRQGLDP-----FSCVIVDEAGQSCEVETL 2215
Score = 65 (27.9 bits), Expect = 7.7e-13, Sum P(7) = 7.7e-13
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 1042 SDKRASQTESLKNRVSILDSSKDLLDGSGPASPKQVLDESVGKSLNSLDSKVVDGKKKES 1101
+ K + T+ L V+I KDL+ + K E GK L + ++ ++ G
Sbjct: 676 NSKSLTSTDCLL--VNIKKEPKDLITQECESLQKSFAKEMYGKVLENRNNDLMSGNCAMG 733
Query: 1102 NSKFNAS-DSLSFQNRVGLRNK 1122
N F+ S SL+F+ L NK
Sbjct: 734 NQGFSTSIQSLNFRRSGVLENK 755
Score = 63 (27.2 bits), Expect = 1.2e-12, Sum P(7) = 1.2e-12
Identities = 48/223 (21%), Positives = 93/223 (41%)
Query: 964 PEDL-SVERKSAALDIRPFPVKDVDVEILDSETIASKSKDNLIVVSDDEIEKEPSVDQGL 1022
PE + S + SA RP P + D++ S T AS+++ + + K+ QG+
Sbjct: 775 PEHVCSSDTHSAEGHSRPLP-QIADLKNCSSATSASEAEQLVFCTGSSCMRKDCGKHQGV 833
Query: 1023 --LSDFKSRQCVVVSKTGAPISDKRASQ----TESLKNRVSILD-----SSKDLLDGSGP 1071
+ + + R+ +S++ +K A Q +++ + + LD S+ L G+
Sbjct: 834 NTVGENEDRESAGISRSSESTWEKSAFQYGLVSKNQEQKEMPLDCFSFAKSQPGLQGNKD 893
Query: 1072 -----ASPKQVLDESVGKSLNSLDSKVVDGKKKESNSKFNASDSLSFQNRVGLRNKPVES 1126
A L ++V +S+ V D S +K S++ + ++ +P E
Sbjct: 894 NSILLADTSDTLLQNVSTKDDSIKKSVSDHIPSGSENKGVMSNTALPVGPLAVKCEPSER 953
Query: 1127 SSFKNVNQASSNVVAKPTNKLLKELVCDVENDPLESSFKSGKH 1169
N ++++ + K +KL N P ESS +S H
Sbjct: 954 M-VSGHNTSTNSQIDKELSKLSLAAYAKSVNFPSESSQESSMH 995
Score = 54 (24.1 bits), Expect = 8.4e-12, Sum P(7) = 8.4e-12
Identities = 51/213 (23%), Positives = 90/213 (42%)
Query: 970 ERKSAALDIRPFPVKDVDVE-ILDSETIASKSKDNLIV-VS--DDEIEKEPSVDQGLLSD 1025
E+K LD F ++ D+ + + + D L+ VS DD I+K SV + S
Sbjct: 870 EQKEMPLDCFSFAKSQPGLQGNKDNSILLADTSDTLLQNVSTKDDSIKK--SVSDHIPSG 927
Query: 1026 FKSRQCVVVSKTGAPISDK--RASQTESLKNRVSILDSS---KDLLDGSGPASPKQVLDE 1080
+++ V+S T P+ + +E + + + +S K+L S A K V
Sbjct: 928 SENKG--VMSNTALPVGPLAVKCEPSERMVSGHNTSTNSQIDKELSKLSLAAYAKSVNFP 985
Query: 1081 SVGKSLNSLDSKVVDGKKK------ESNS-KFNAS--DSLSFQNRVGLRNKPVESSSFKN 1131
S +S+ + D K+K SNS + N S D+ S N++ + + +
Sbjct: 986 SESSQESSMHHNICDVKRKVKSAVRSSNSAQSNQSLCDTDSHGNKIIIILDSSDEENGVT 1045
Query: 1132 VNQASSNVVAK--PTNKLLKELVCDVENDPLES 1162
VN+ + + P + + E+ DV LES
Sbjct: 1046 VNEETKELNENMCPEKQPVSEMQHDVTGSTLES 1078
Score = 51 (23.0 bits), Expect = 7.7e-13, Sum P(7) = 7.7e-13
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 362 RSEKIHKDIFDLFPPFLQSLEALQD 386
R ++H F F PF+QSL L+D
Sbjct: 401 RDMRVHHSTFLWFIPFVQSLMDLKD 425
Score = 50 (22.7 bits), Expect = 8.2e-09, Sum P(7) = 8.2e-09
Identities = 27/106 (25%), Positives = 45/106 (42%)
Query: 1602 VHPNSLPFFIDTLVDHRLAEER--MHLTDPKNEFCTRSSTLRSNLEKL---VDRIRF--F 1654
V N+ P +DT VD E+ + +T + S ++L++L + R RF F
Sbjct: 2385 VFKNNSPGEVDT-VDAFQGREKDCIIVTCVRANSSKGSIGFLASLQRLNVTITRARFSLF 2443
Query: 1655 EAKRANTKDGNSDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQK 1700
R T N D ++ D +G +K SD + K+ + K
Sbjct: 2444 ILGRLKTLMENKDWNKLIQDAQRRGAIIKTSDKSYKKDALKILKLK 2489
Score = 45 (20.9 bits), Expect = 9.0e-11, Sum P(7) = 9.0e-11
Identities = 20/101 (19%), Positives = 39/101 (38%)
Query: 895 KRTITCLLNLLKDSCSGTSLLTVSSIENLISSDHLDVDGLVEKVSLLCVSLSKESSRNSG 954
KR + + + S SL S N I + +D E+ + +KE + N
Sbjct: 1002 KRKVKSAVRSSNSAQSNQSLCDTDSHGNKII---IILDSSDEENGVTVNEETKELNENMC 1058
Query: 955 KTLMSMAHFPEDLSVERKSAALDIRPFPVKDVDVEILDSET 995
++ D++ + + P P++D D + + ET
Sbjct: 1059 PEKQPVSEMQHDVTGSTLESKMPNSPLPLEDCDSQYFEFET 1099
Score = 41 (19.5 bits), Expect = 7.7e-13, Sum P(7) = 7.7e-13
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 876 LHDLMDWGKSQLKVVIVYWKRTITCLLNLLKDSCSGTS----LLTVSSIE 921
L DL D G + + VI Y I +LN C S L+ VS IE
Sbjct: 420 LMDLKDLGVAYIVEVIHYLCSEIKDILNERIQRCDKVSEFFLLILVSIIE 469
Score = 39 (18.8 bits), Expect = 7.7e-13, Sum P(7) = 7.7e-13
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 317 DSPE-FSHAVSCLRELFKMLGYKLW 340
DS + F A+ C + LG K+W
Sbjct: 282 DSTDPFWPALHCFMVILDQLGSKVW 306
Score = 39 (18.8 bits), Expect = 9.0e-11, Sum P(7) = 9.0e-11
Identities = 22/91 (24%), Positives = 37/91 (40%)
Query: 1080 ESVGKSLNSLDSKVVDGKKKESN--SKFNASDSLSFQNRVGLRNKPVESSSFKNVNQASS 1137
E K +N++D+K V K K S+ S + + + N+ +S N+A+
Sbjct: 1386 EDRSKKVNTMDTKSVKQKAKCSDQPSVEKQREKQTGETFYPSVNERGHVTSISAENEAAQ 1445
Query: 1138 NVVAKPTNKLLKELVCDVENDP--LESSFKS 1166
+ K CDV P ++SS S
Sbjct: 1446 TTFVSDCSGSNKAKDCDVMVPPVPMDSSLCS 1476
Score = 37 (18.1 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 1210 GPPKLDDWYKPILEIDYFATVGLASSREDENRVH--CKLKEVPVCFQSPEQFVSIFRPLV 1267
GP ++ P+LE+ + + L + E V C+++E FQ E++ I+ LV
Sbjct: 104 GPDFENNLRVPLLEVLKYPYL-LLHEKVSELCVEVLCRMEENHTSFQVFEKYPGIYLFLV 162
>SGD|S000004422 [details] [associations]
symbol:SEN1 "Presumed helicase and subunit of the Nrd1
complex (Nrd1p-Nab3p-Sen1p)" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0043144
"snoRNA processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA;IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IMP;IDA] [GO:0031126 "snoRNA
3'-end processing" evidence=IMP] [GO:0006378 "mRNA polyadenylation"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA;IMP] [GO:0016180 "snRNA processing"
evidence=IEA;IMP] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISS] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=ISS] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0035649 "Nrd1 complex" evidence=IDA]
[GO:0005657 "replication fork" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
InterPro:IPR024714 SGD:S000004422 GO:GO:0005524 GO:GO:0005634
GO:GO:0019904 GO:GO:0006378 EMBL:BK006945 GO:GO:0008033
eggNOG:COG1112 EMBL:U20939 EMBL:U21094 GO:GO:0006364 GO:GO:0006369
GO:GO:0031126 GO:GO:0043141 KO:K00088 RefSeq:NP_013536.3
GeneID:851152 KEGG:sce:YLR432W GO:GO:0016180 KO:K10706
RefSeq:NP_013534.3 GeneID:851150 KEGG:sce:YLR430W GO:GO:0035649
GO:GO:0032575 InterPro:IPR024481 PANTHER:PTHR10887:SF164
Pfam:PF12726 EMBL:M74589 PIR:S53416 ProteinModelPortal:Q00416
SMR:Q00416 DIP:DIP-881N IntAct:Q00416 MINT:MINT-427565
STRING:Q00416 PaxDb:Q00416 PeptideAtlas:Q00416 EnsemblFungi:YLR430W
CYGD:YLR430w GeneTree:ENSGT00580000081652 HOGENOM:HOG000246755
OMA:SAIIPLR OrthoDB:EOG4MPMZ6 NextBio:967924 Genevestigator:Q00416
GermOnline:YLR430W Uniprot:Q00416
Length = 2231
Score = 150 (57.9 bits), Expect = 2.6e-12, Sum P(5) = 2.6e-12
Identities = 37/96 (38%), Positives = 52/96 (54%)
Query: 1556 RARVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLV 1615
+ ++LICA SNAAVDE+ R+ K G+Y G +KP LVRVG V+ ++ LV
Sbjct: 1403 KQKILICAPSNAAVDEICLRL-KSGVYDKQGHQFKPQLVRVGRSDVVNVAIKDLTLEELV 1461
Query: 1616 DHRLAEERMHL-TDPK-----NEFCTRSSTLRSNLE 1645
D R+ E + TDP+ N T+ LR L+
Sbjct: 1462 DKRIGERNYEIRTDPELERKFNNAVTKRRELRGKLD 1497
Score = 110 (43.8 bits), Expect = 2.6e-12, Sum P(5) = 2.6e-12
Identities = 75/300 (25%), Positives = 126/300 (42%)
Query: 1218 YKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEFKAQLHS 1277
Y+ IL+ DY S D+ + +V F SP + + +PL+L E L S
Sbjct: 1117 YEIILQWDYTRN----SEYPDDEPIG-NYSDVKDFFNSPADYQKVMKPLLLLESWQGLCS 1171
Query: 1278 SFLEMSSWEDMYYGSLSVLSVERVDDFHLVRFVHDDNDSVTSKIFSENDLVLLTRVSPQK 1337
S ED S+ V + V DF+ V + + SE+DL+++ + P
Sbjct: 1172 S----RDREDYKPFSIIVGNRTAVSDFYDV-YASVAKQVIQDCGISESDLIVMAYL-PDF 1225
Query: 1338 TPHDVHMVGKVXXXXXXXXXXXXILLIRFYLQN---GSVRLN-QARRN------LLERSK 1387
P ++ + +R L+N G+V + + RN L RS+
Sbjct: 1226 RPDK-----RLSSDDFKKAQHTCLAKVRT-LKNTKGGNVDVTLRIHRNHSFSKFLTLRSE 1279
Query: 1388 WHATLIMSITPQLREFHAXXXXXXXXXXXXXXXXVNVSRGYNESRELDLGKLSQLQQILK 1447
+ +M +T RE+ + S N +D ++ +++ K
Sbjct: 1280 IYCVKVMQMTTIEREY-STLEGLEYYDLVGQILQAKPSPPVN----VDAAEIETVKKSYK 1334
Query: 1448 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHL 1507
N SQ +AI ++S K+ SLIQGPPGTGKT+TI+ I+ L+T+ + S++
Sbjct: 1335 --LNTSQAEAI-----VNSVSKEG--FSLIQGPPGTGKTKTILGIIGYFLSTKNASSSNV 1385
Score = 73 (30.8 bits), Expect = 2.6e-12, Sum P(5) = 2.6e-12
Identities = 37/134 (27%), Positives = 59/134 (44%)
Query: 1655 EAKRANTKDGNSDPKNMLDDEVHKGDD-VKLSDV-ELEAKLRKLYEQKKQIYRELGVA-- 1710
E K N + + LD E + + D+ +L+ K+R+L +I ELG
Sbjct: 1479 ERKFNNAVTKRRELRGKLDSESGNPESPMSTEDISKLQLKIREL----SKIINELGRDRD 1534
Query: 1711 QVQEKKS--YEETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSE 1768
+++EK S Y + + IL ++I+ +TLSG D+ + G KF
Sbjct: 1535 EMREKNSVNYRNRDLDRRNAQAHILAVSDIICSTLSGSAHDVL-----ATMGIKF----- 1584
Query: 1769 NTLFDAVVIDEAAQ 1782
D V+IDEA Q
Sbjct: 1585 ----DTVIIDEACQ 1594
Score = 50 (22.7 bits), Expect = 2.6e-12, Sum P(5) = 2.6e-12
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 70 PYLELFYNYFKDECHDSPLRLLWKRIS 96
P +++YN+ HD PL L + ++
Sbjct: 338 PIFKMWYNHLSKSYHDKPLDFLLRGLT 364
Score = 39 (18.8 bits), Expect = 2.6e-12, Sum P(5) = 2.6e-12
Identities = 54/253 (21%), Positives = 94/253 (37%)
Query: 903 NLLKDSCSGTSLLTVSSIENLISSDHLDVDGLVEKVSLLCVSLSKESSRNSGKTLMSMAH 962
++L D L + + +N++ L + L+E L +S S + K S+
Sbjct: 822 DILHDQTKNLLLNVLETFKNMLYWLRLSDEVLLESCVRLIISTSDLAHEKHVKVDDSLVE 881
Query: 963 FPEDLSVERKSAALDIRPFPVKDVDVEILDSETIASKSKDNLIVVSDDEIEKEPSVDQ-G 1021
+ + K + + + EIL I +K+ + + KE + + G
Sbjct: 882 MMAKYASKAKRFSNKL----TEQQASEILQKAKIFNKALTEEVATEAENYRKEKELSRLG 937
Query: 1022 LLSDFKSRQCVVVSKTGAP-ISDKRASQTESLKNRVSILDSSKDLLDGSGPASPK--QVL 1078
+ D V S + +P +S AS S ++R L + L S P+ Q
Sbjct: 938 KVIDLTDS--VPASPSLSPSLSSTIASS--SAESRADYLQ--RKALSSSITGRPRVAQPK 991
Query: 1079 DESVGKSLNSLDSKVVDGKKKESNSKFNASDSLSFQNRV--------------GLRNKPV 1124
S G +S ++K+ K + SK + NRV GL NK
Sbjct: 992 ITSFGTFQSSANAKLHRTKPVKPLSKMELARMQLLNNRVVHPPSAPAFHTKSRGLSNKND 1051
Query: 1125 ESSSFKNVNQASS 1137
+SSS ++ N S
Sbjct: 1052 DSSSEESDNDIES 1064
>UNIPROTKB|F1S0U6 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654 GO:GO:0006302
KO:K10706 GeneTree:ENSGT00580000081652 CTD:23064 OMA:RLINHFE
PANTHER:PTHR10887:SF15 EMBL:CU550727 EMBL:CU914573
RefSeq:XP_003353743.1 UniGene:Ssc.45527 Ensembl:ENSSSCT00000006294
GeneID:100511239 KEGG:ssc:100511239 Uniprot:F1S0U6
Length = 2661
Score = 114 (45.2 bits), Expect = 6.6e-12, Sum P(7) = 6.6e-12
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 1450 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQ 1509
FNE Q +AI A + ++ LI GPPGTGK++TIV ++ LL T + H +
Sbjct: 1928 FNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLL-TENQRRGHSDE 1986
Query: 1510 NYSSCINSRPKIGQSAAIARAWQDAAL 1536
N S KI Q+ + A +AA+
Sbjct: 1987 N------SNAKIKQNRVLVCAPSNAAV 2007
Score = 106 (42.4 bits), Expect = 6.6e-12, Sum P(7) = 6.6e-12
Identities = 46/153 (30%), Positives = 72/153 (47%)
Query: 1558 RVLICAQSNAAVDELVSRIS---KEGLYGSD---GKTYKPYLVRVGNVKTVHPNSLPFFI 1611
RVL+CA SNAAVDEL+ +I KE G LVR+G K+++ L F +
Sbjct: 1996 RVLVCAPSNAAVDELMKKIILEFKEKCKDKRNPLGNCGDINLVRLGPEKSINNEVLRFSL 2055
Query: 1612 DTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNM 1671
D+ V+HR+ ++ L E R L L++L +RA + G +
Sbjct: 2056 DSQVNHRMKKD---LPSYVQEMHRRKEFLDHQLDEL-------SRQRALCRGGREMQRRE 2105
Query: 1672 LDDEVHKGDDVKLSDVELEAKLRKLY--EQKKQ 1702
LD ++ +V EL +K++++ QK Q
Sbjct: 2106 LDGKIA---EVSKERQELASKIKEVQGRPQKTQ 2135
Score = 98 (39.6 bits), Expect = 6.6e-12, Sum P(7) = 6.6e-12
Identities = 50/184 (27%), Positives = 92/184 (50%)
Query: 98 EMQHCIQCVSQHHQA-QEMYSM-----EYES-GVIGPLLDVLRSLDEERVTKYLREINAR 150
++ +C++CV+++H+A +E+ S+ E E+ +I +++ E+ Y+ + N
Sbjct: 36 DLCYCLECVAEYHKAREELPSLHETLWELETVRLINHFEKSMKAEIEDDDELYIVDNNGE 95
Query: 151 LAHQEYYPQIDNNQVICIMYEVLMFPVLLDDQSLFTEFETFIEAVDNMHELALDGHQLF- 209
++ Q N++ + E+L +P LL + + E +EA+ M E A Q+F
Sbjct: 96 AQLFDFTGQDFENKLRVPLLEILKYPYLLLHERVN---ELCVEALCRM-EQANCSFQVFD 151
Query: 210 --PGVFALFFF--NRRVRTIGRRLARSMGKLRRAT--DLEPMQPLLKKFI--GFLET-EV 260
PG++ LF N VR AR++GK+ R DL+ + L K I G LE E+
Sbjct: 152 KHPGIY-LFLVHPNEMVRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELGLLERPEI 210
Query: 261 LTST 264
T++
Sbjct: 211 YTTS 214
Score = 77 (32.2 bits), Expect = 3.6e-09, Sum P(7) = 3.6e-09
Identities = 45/191 (23%), Positives = 83/191 (43%)
Query: 1611 IDTLVDHRLAEERMHLTDPKNEF--CTRSSTLRSNLEKLVDR--IRFFEAKRANTKDGNS 1666
+D L+ + E + D +N C + +R EK ++ +RF + N +
Sbjct: 2007 VDELMKKIILEFKEKCKDKRNPLGNCGDINLVRLGPEKSINNEVLRFSLDSQVNHRMKKD 2066
Query: 1667 DPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYR-ELG--VAQVQEKKS-----Y 1718
P + E+H+ + ++ ++ R L +++ R EL +A+V +++
Sbjct: 2067 LPSYV--QEMHRRKEFLDHQLDELSRQRALCRGGREMQRRELDGKIAEVSKERQELASKI 2124
Query: 1719 EETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVID 1778
+E + K + +I+ E+ I+ TLS GG L ES + G P F V++D
Sbjct: 2125 KEVQGRPQKTQNTIILESHIICCTLSTSGGLLL----ESAFRGQGGVP-----FSCVIVD 2175
Query: 1779 EAAQVVLVHEL 1789
EA Q V L
Sbjct: 2176 EAGQSCEVETL 2186
Score = 57 (25.1 bits), Expect = 6.6e-12, Sum P(7) = 6.6e-12
Identities = 36/117 (30%), Positives = 53/117 (45%)
Query: 1024 SDFKSRQCVVVSKTGAPIS---DKRASQTESLKNRVS--ILDSSKDLLDGSG-PASPKQV 1077
S+ K+ V K G P+S R S T+ +R + I + SK L + S P + +
Sbjct: 1563 SEAKAADEDVFRKPGLPLSASKPSRPSTTKIFSSRTTSRIANLSKSLENASALPPTLRNK 1622
Query: 1078 LD--ESVGKSLN--SLDSKVVDGKKKE-SNSKFNASDSLSFQNRVGLRNKPVESSSF 1129
+ + + K L SL S G+ K SN ++ + S S NR G R ES SF
Sbjct: 1623 SNGVQPISKVLQPASLMSPKPMGEVKNLSNVPYSQAPSAS--NRQGYRGAFGESKSF 1677
Score = 52 (23.4 bits), Expect = 6.6e-12, Sum P(7) = 6.6e-12
Identities = 28/127 (22%), Positives = 51/127 (40%)
Query: 1215 DDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPL-VLEEFKA 1273
D + K +L+ Y V + VPV FQ + S+F PL +L F+
Sbjct: 1694 DAFVKEVLKWKYEMFVNFDQCGPPSGLCQAIARRVPVRFQDCGDYFSVFFPLMILNTFET 1753
Query: 1274 QLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHLVRFVHDDNDSVTSKIF-SENDLVLLT- 1331
+ ++ + E + L + + V V+ + + ++ ENDLV L
Sbjct: 1754 -VAQEWISSPNKEKFHQLHLRKFPADYKKYWEFV--VYLEECELAKQLHPKENDLVFLVP 1810
Query: 1332 -RVSPQK 1337
R++ +K
Sbjct: 1811 ERLNGEK 1817
Score = 49 (22.3 bits), Expect = 6.6e-12, Sum P(7) = 6.6e-12
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 365 KIHKDIFDLFPPFLQSLEALQD 386
++H F F PF+QSL L+D
Sbjct: 402 RVHNSTFLWFIPFVQSLMDLKD 423
Score = 49 (22.3 bits), Expect = 6.4e-11, Sum P(8) = 6.4e-11
Identities = 35/143 (24%), Positives = 62/143 (43%)
Query: 941 LCVSLS---KESSRNSGKTLMSMAHFPEDLSV---ERKSAALDIRPFP----VKDVDVEI 990
+C LS K+ +NSG ++ + LSV ER + D + + I
Sbjct: 787 VCAKLSHVMKKQHKNSGPVSTAVT-VDDSLSVPSLERVHSKKDAGGQKGDGFIHSLSNGI 845
Query: 991 LDSETIASKSKDNLIVVSDDEIEKEPSVDQGLLSDFKSRQCVV----VSK---TGAPISD 1043
LD + KS+DN + +I+KE +D L C + V K + A +D
Sbjct: 846 LDDKHGEQKSQDNSSLPKKKQIKKEEELD---LFSTPENNCQIQEYHVGKDLVSFAETTD 902
Query: 1044 KRASQTESLKNRVSILD-SSKDL 1065
++T K+ V++L+ + K++
Sbjct: 903 TFMNKTPPFKDPVTLLELTDKEI 925
Score = 47 (21.6 bits), Expect = 9.8e-11, Sum P(8) = 9.8e-11
Identities = 32/163 (19%), Positives = 64/163 (39%)
Query: 947 KESSRNSGKTLMSMAHFPEDL-SVERKSAALDIRPFPVKDVDVEILDSETIASKSKDNLI 1005
K+S+R + +H P++ S + D P P + + L+ S S +
Sbjct: 710 KKSTRKHKSVKENSSHTPQNCTSRSGPESVFDRGPAPSTRLSTDSLEK---VSTSNEGFS 766
Query: 1006 VVSDDEIEKEPSVDQGLLSDFKSRQCVVVSKTGAPISDKRASQTESLKNRVSILDSSKDL 1065
+ DD + + +G K+ C +S + K+ + + V++ D S +
Sbjct: 767 L-RDDALGRS---SKGKSKAQKNEVCAKLSH----VMKKQHKNSGPVSTAVTV-DDSLSV 817
Query: 1066 LDGSGPASPKQVLDESVGKSLNSLDSKVVDGKKKESNSKFNAS 1108
S K + ++SL + ++D K E S+ N+S
Sbjct: 818 PSLERVHSKKDAGGQKGDGFIHSLSNGILDDKHGEQKSQDNSS 860
Score = 42 (19.8 bits), Expect = 3.0e-11, Sum P(7) = 3.0e-11
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 364 EKIHKDIFDLFPPFLQSLEALQD-----GEHEKQRRHFLYFLLYQVPVSSNFSVLTAQ 416
+K + F+L P L SL L+D G + QR+ L + V +N +LT Q
Sbjct: 1289 KKRPRKAFELSQPSLDSLAQLRDHGKTVGAVDTQRKTKL-IAAQSLSVKNNKKLLTNQ 1345
Score = 40 (19.1 bits), Expect = 6.4e-11, Sum P(8) = 6.4e-11
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1142 KPTNKLLKELVCDVENDPLESSFKS 1166
+P++ + KE D E D E+ KS
Sbjct: 1176 RPSSSIRKEGQSDTERDLPENGLKS 1200
Score = 37 (18.1 bits), Expect = 6.6e-12, Sum P(7) = 6.6e-12
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 317 DSPE-FSHAVSCLRELFKMLGYKLW 340
DS + F A+ C + LG K+W
Sbjct: 281 DSVDPFWPALHCFMVILDRLGSKVW 305
>UNIPROTKB|G4NIZ8 [details] [associations]
symbol:MGG_02784 "DNA-binding protein SMUBP-2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR024714 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0008033 GO:GO:0004386 EMBL:CM001237
GO:GO:0006364 GO:GO:0006369 GO:GO:0043144 GO:GO:0016180 KO:K10706
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
RefSeq:XP_003720957.1 EnsemblFungi:MGG_02784T0 GeneID:2682672
KEGG:mgr:MGG_02784 Uniprot:G4NIZ8
Length = 2037
Score = 117 (46.2 bits), Expect = 8.5e-12, Sum P(4) = 8.5e-12
Identities = 48/192 (25%), Positives = 88/192 (45%)
Query: 1558 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDH 1617
++L+CA SNAAVDELV R+ K G+ ++G T+K ++R+G ++ +D LV
Sbjct: 1392 KLLVCAPSNAAVDELVLRL-KAGIKDTNGNTHKINVLRLGRSDAINAAVRDVTLDELVKE 1450
Query: 1618 RLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRI----RFFEAKRANTKDG--NSDPKNM 1671
++ + +++ N T L ++ R+ E RA G NS +N+
Sbjct: 1451 KM-DAALNVNGSGNSGPTDREKLHQEAGEIKVRVAALREALEQARAAGDHGQTNSLQRNL 1509
Query: 1672 LDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALK---HKL 1728
DE+ K + ++ + Y ++ +I R + Q +++ L H +
Sbjct: 1510 --DELRKKQGQIGAQIDRDKASGNTYAREAEIKRR-NIQQSILSEAHVLCATLSGAGHDM 1566
Query: 1729 RKSILKEAEIVV 1740
KS+ E E V+
Sbjct: 1567 FKSLQVEFETVI 1578
Score = 103 (41.3 bits), Expect = 8.5e-12, Sum P(4) = 8.5e-12
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 1469 KKDCELSLIQGPPGTGKTRTIVAIVSALLATRTS--PKSHLK 1508
K++ +L+QGPPGTGKT+TI+A+V ALL + S P + +K
Sbjct: 1339 KENDGFTLVQGPPGTGKTKTIIAMVGALLTGKISRAPPTRIK 1380
Score = 85 (35.0 bits), Expect = 1.3e-08, Sum P(4) = 1.3e-08
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 1689 LEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKSILKEAEIVVTTLSGCGG 1748
L+ L +L +++ QI ++ + E + + +++SIL EA ++ TLSG G
Sbjct: 1505 LQRNLDELRKKQGQIGAQIDRDKASGNTYAREAEIKRRNIQQSILSEAHVLCATLSGAGH 1564
Query: 1749 DLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1784
D+ FK S F+ V+IDEAAQ V
Sbjct: 1565 DM----------FK----SLQVEFETVIIDEAAQCV 1586
Score = 80 (33.2 bits), Expect = 8.5e-12, Sum P(4) = 8.5e-12
Identities = 82/390 (21%), Positives = 154/390 (39%)
Query: 1036 KTG-APISDKRA-SQTESLKNRVSILDSSKDLLDGSGPASPKQVLDESVGKSLNSLDSKV 1093
+TG AP + R S+ S + ++SI+ S K + P Q+L + KS N K
Sbjct: 930 ETGTAPTAPARTTSKATSDEQQLSIMQSIKAQVQSERKPKP-QMLSAAAIKS-NQSSLKE 987
Query: 1094 VDGKKKESNSKFNASD---SLSFQNRVGLRNKPV--ESSSFKNVNQASSNVVAKPTNKLL 1148
K++ +K NA+ + + + NK V E S + + S V+ K
Sbjct: 988 ARAKEQAERAKANAASVARAKAIREAFSSGNKIVAGEGSGLQGI----SGVLGKDHAPTK 1043
Query: 1149 KELVCDVE-------NDPLESSFKSGKHQQTYLTKSGPFVPKRQVIQLKSPFENRCGLHR 1201
E++ D +D + F +G+ + + + +Q++ +K + + R
Sbjct: 1044 SEIMVDSSEEEGGDSDDEMSDLFGAGQAGKDAAAQRLKQLAAKQMVPVK-----KTKIQR 1098
Query: 1202 METGVK-RFGPPKLDDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFV 1260
+ ++ R PP ++ ++ ILE D F + N CK EV + +P +
Sbjct: 1099 SKKDLRARITPP-MERLHEAILEWDIFH-----EGSDPPNGYKCK--EVAKSYTNPVDYR 1150
Query: 1261 SIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHLVRF---VHDDNDSV 1317
F P+++ E SF+ + + + VD F V + + D
Sbjct: 1151 ETFFPMLVNE----AWRSFVTSKDESTAKPFDIKITTRTSVDKFLEVATSMPISANKDKD 1206
Query: 1318 TSKIFSENDLVLL-TRVSPQKTPHDVHMVGKVXXXXXXXXXXXXILLIRFYLQN-GSVRL 1375
++ S+ D+VL T P + H + +V +L + + + + G+ R
Sbjct: 1207 RDRL-SDGDIVLFSTAQDPLSSKESPHCLARVFKTGRKRG----VLEVTYRITSKGNSRF 1261
Query: 1376 NQARRNLLERSKWHATLIMSITPQLREFHA 1405
A +LL + I ++T REF A
Sbjct: 1262 --ASDHLLPGNDLRGLRITNMTTVEREFAA 1289
Score = 69 (29.3 bits), Expect = 8.5e-12, Sum P(4) = 8.5e-12
Identities = 27/107 (25%), Positives = 46/107 (42%)
Query: 255 FLETEVLTSTFKTSRPRARLKRLPIWLGITSXXXXXXXXXXXXGI--LERYPIFFDIVLN 312
+L +E+ ++ F S P AR+KR W GI + +E P + I +
Sbjct: 263 YLASEI-SAVFNPSVPEARIKRF--WDGIAIIIPSMSADFVLHTLRGMEVQPDIYHIAFH 319
Query: 313 HISG-DSPE-FSHAVSCLRELFKMLGYKLW-LRSTLSPSVMRNTLLG 356
H+S SPE F+ + + L + W + +SP++ LG
Sbjct: 320 HLSYVQSPEVFATLIKGIISLIQKSPKAFWDALADVSPAIFTQHTLG 366
>POMBASE|SPAC6G9.10c [details] [associations]
symbol:sen1 "ATP-dependent 5' to 3' DNA/RNA helicase
Sen1" species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006364 "rRNA processing" evidence=ISO] [GO:0006369
"termination of RNA polymerase II transcription" evidence=ISO]
[GO:0008033 "tRNA processing" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016180 "snRNA
processing" evidence=ISO] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IDA] [GO:0035649 "Nrd1 complex"
evidence=ISO] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IDA] [GO:0043144 "snoRNA processing"
evidence=ISO] InterPro:IPR024714 PomBase:SPAC6G9.10c GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006397
GO:GO:0008033 eggNOG:COG1112 GO:GO:0006364 GO:GO:0006369
GO:GO:0043144 GO:GO:0043141 GO:GO:0016180 KO:K10706 GO:GO:0035649
PIR:T39072 RefSeq:NP_594119.1 ProteinModelPortal:Q92355
EnsemblFungi:SPAC6G9.10c.1 GeneID:2541556 KEGG:spo:SPAC6G9.10c
OrthoDB:EOG4BCHWF NextBio:20802652 GO:GO:0032575 InterPro:IPR024481
PANTHER:PTHR10887:SF164 Pfam:PF12726 Uniprot:Q92355
Length = 1687
Score = 124 (48.7 bits), Expect = 2.0e-10, Sum P(6) = 2.0e-10
Identities = 36/149 (24%), Positives = 76/149 (51%)
Query: 1556 RARVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLV 1615
+ ++L+CA SNAAVDE++ R+ K G +G+ Y P +VR+GN +T++ + ++
Sbjct: 1191 KQQILLCAPSNAAVDEVLLRL-KRGFLLENGEKYIPRVVRIGNPETINVSVRDLSLEYQT 1249
Query: 1616 DHRLAEERMHLTDPKN-EFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNMLDD 1674
+ +L E D + + TR R + +I E + +D D K++ +
Sbjct: 1250 EKQLLEVNQGAIDLGSLQELTR---WRDTFYDCIQKIEELEKQIDVARDVAEDTKSLGKE 1306
Query: 1675 EVHKGDDVKLSDVELEAKLRKLYEQKKQI 1703
+K ++ L++ ++E + + + K++
Sbjct: 1307 LQNKINEKNLAEQKVEELQSQSFTKNKEV 1335
Score = 106 (42.4 bits), Expect = 3.5e-09, Sum P(5) = 3.5e-09
Identities = 40/107 (37%), Positives = 55/107 (51%)
Query: 1680 DDVKLSDVELEAKL--RKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKSILKEAE 1737
+D K EL+ K+ + L EQK + EL Q Q +E L+ K +K+ILK+A+
Sbjct: 1298 EDTKSLGKELQNKINEKNLAEQKVE---EL---QSQSFTKNKEVDLLRKKAQKAILKQAD 1351
Query: 1738 IVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1784
+V TLSG G DL V S++ F V+IDEAAQ V
Sbjct: 1352 VVCATLSGSGHDL--VAHSSLN------------FSTVIIDEAAQAV 1384
Score = 104 (41.7 bits), Expect = 2.0e-10, Sum P(6) = 2.0e-10
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 1440 SQLQQILKT-SFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1497
S+++ +K NE Q +AI A+ + +LIQGPPGTGKT+TI+ I+SALL
Sbjct: 1119 SEIKAAMKRYQVNEPQAKAIMCALDNNG-------FTLIQGPPGTGKTKTIIGIISALL 1170
Score = 74 (31.1 bits), Expect = 2.0e-10, Sum P(6) = 2.0e-10
Identities = 37/178 (20%), Positives = 70/178 (39%)
Query: 46 DAFNFLIGLPEKNHIWCGSWDIMGPYLELFYNYFKDECHDSPLRLLW--KRISGEMQHCI 103
D F L E H +C ++ Y++ + +F HD W ++ C
Sbjct: 9 DCFEKLSSSKEGQHWFCSG--LLTQYIQPTFFWF---AHDETPSFKWVLNAYHERLRSCT 63
Query: 104 QCVSQHHQAQEMYSMEYESGVIG-PLLDVLRSLDEERVTKYLREINARLAHQEYYPQIDN 162
C+ +++ + + G + D+ ++ + + L + A E ID
Sbjct: 64 SCIQAYYELRNESLAKGSYSFTGFSITDLQEKWNKWDIIRVLEDFKA--LEDE---TIDF 118
Query: 163 NQVICIMYEVLMFPVLLDDQSLFTEFETFIEAVDNMHELALDG-HQLF-PGVFALFFF 218
+ C+++E L+ P LFT + A+D + L D +F PG + LFF+
Sbjct: 119 TSLPCLIFETLLNP------KLFTCKNIYKNAIDAFNGLLSDWCSNIFLPG-YLLFFY 169
Score = 59 (25.8 bits), Expect = 2.0e-10, Sum P(6) = 2.0e-10
Identities = 43/166 (25%), Positives = 75/166 (45%)
Query: 1127 SSFKNVNQASSNVVAKPTNKLLKELVCDVENDPLESSFKSGKHQQTYLTKSGPFV--PKR 1184
SS + + + N V KP N LL E + D E+D ++ K G K P + +R
Sbjct: 827 SSAVSSRKPTFNEV-KPAN-LLAEDLSDNEDD-IDR--KQGLFSLAKANKI-PEIRQQER 880
Query: 1185 QVIQLKS-------PFENRCGLHRMETGVKRFGPPKLDDWYKPILEIDYFATVGLASSRE 1237
+ +QL S P + R +R VK P + D+YK IL + S
Sbjct: 881 RQVQLLSNSTIKMHPSQIRMMTNRNVANVKARLFPSMTDFYKEILSWE-----PANQSPN 935
Query: 1238 DENRVHCKLK-EVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEM 1282
+ H KL ++ F++ E ++ + +P++ E +Q+ S+ L++
Sbjct: 936 PVLKFH-KLDGKIIDSFKTVEHYMEVLQPMIFMECWSQIQSTKLDL 980
Score = 42 (19.8 bits), Expect = 2.0e-10, Sum P(6) = 2.0e-10
Identities = 24/87 (27%), Positives = 37/87 (42%)
Query: 920 IENLISSDHLDVDGLVEKVSLLCVSLSKESSRNSGKTLMSMAHFPEDLSVERKSAALDIR 979
++NL DV L K+S C + E S NS + +M F E V + + ++
Sbjct: 436 LDNLQEEKISDV--LFSKISSCCFAHDIEISENSTPS-GTMVQFAELWQVMSEYISGFLK 492
Query: 980 PFPVKDVDVEILDSETIASKSKDNLIV 1006
F K EI S + SK + +V
Sbjct: 493 GFSEKS-STEI--SNMLGDSSKFDTVV 516
Score = 38 (18.4 bits), Expect = 2.0e-10, Sum P(6) = 2.0e-10
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 1707 LGVAQVQEKKSYEETKALKHKLRKSILKEAEI-VVTTLSGCGGDL-YGVCSESVSGFKFG 1764
+GV + +E +A K K KS + +I V G D+ + C +S S G
Sbjct: 1533 IGVITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIG 1592
>ZFIN|ZDB-GENE-070402-1 [details] [associations]
symbol:setx "senataxin" species:7955 "Danio rerio"
[GO:0006302 "double-strand break repair" evidence=IEA]
InterPro:IPR026121 ZFIN:ZDB-GENE-070402-1 GO:GO:0006302
InterPro:IPR024481 Pfam:PF12726 GeneTree:ENSGT00580000081652
PANTHER:PTHR10887:SF15 EMBL:CU927918 IPI:IPI00481119
Ensembl:ENSDART00000082314 Ensembl:ENSDART00000149777
Uniprot:E7FBJ2
Length = 2368
Score = 101 (40.6 bits), Expect = 2.6e-10, Sum P(8) = 2.6e-10
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 1450 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQ 1509
FN Q +AI+ I + +K + LI GPPGTGK++TI ++ LL++ T+ + +
Sbjct: 1715 FNRDQARAIACGIAMIHRKQKTPKFLLIHGPPGTGKSKTIGGLLYKLLSSATNSSATVGN 1774
Query: 1510 NYSSCINSR 1518
+S +R
Sbjct: 1775 LHSKSRRTR 1783
Score = 99 (39.9 bits), Expect = 2.6e-10, Sum P(8) = 2.6e-10
Identities = 36/126 (28%), Positives = 57/126 (45%)
Query: 1556 RARVLICAQSNAAVDELVSR---ISKE---GLYGSDGKTYKPYLVRVGNVKTVHPNSLPF 1609
R RVL+CA SNAA+D L+ + I KE + G LVR+GN +T+ + PF
Sbjct: 1781 RTRVLLCAPSNAAIDSLMKKVILIFKEKCRNINAPQGNCGDINLVRLGNERTISKSLKPF 1840
Query: 1610 FIDTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPK 1669
+D R + T S + E+L I + A T+ +++ K
Sbjct: 1841 SLDHQTKARAQRAQQ----------TVESDVHRRKEQLDQMIENLSHQCAKTQKNSTEFK 1890
Query: 1670 NMLDDE 1675
N+L+ +
Sbjct: 1891 NLLEQK 1896
Score = 73 (30.8 bits), Expect = 2.6e-10, Sum P(8) = 2.6e-10
Identities = 39/189 (20%), Positives = 82/189 (43%)
Query: 60 IWCG-SWDIMGPYLELFYNYFKDECHDSPLRLLWKRISGEMQHCIQCVSQHHQAQE---- 114
+WC S D G + C + ++ ++ C++CV ++H+A+E
Sbjct: 5 LWCTTSLDSEGD--AAMVALLRSYCSGQQSEMQMDSLNEDLCCCLECVVEYHRARENVPD 62
Query: 115 MYSMEYESGVIGPLLDVLRS-LDEERVTK---YLREINARLAHQEYYPQIDNNQVICIMY 170
++ +E I LL VL S LD+E + Y+ E + ++ P ++++ +
Sbjct: 63 LHKCLWEME-IARLLRVLGSVLDQELGDEDEIYIIEGDHEQPVLKFSPSDIHDRIFIPLC 121
Query: 171 EVLMFPVLLDDQSLFTEFETFIEAVDNMHELALDGHQLFPGVFALFFF-NRRVRTIGRRL 229
E+L +P LL + L + + + + L + + G + L + +VR L
Sbjct: 122 EILRYPYLLCCRELSDMVVRVLYKLQDWQQ-TLSWSEKYQGTYLLLVHPDEKVRRWAIDL 180
Query: 230 ARSMGKLRR 238
A+++ + R
Sbjct: 181 AKTLKSVDR 189
Score = 63 (27.2 bits), Expect = 2.6e-10, Sum P(8) = 2.6e-10
Identities = 28/94 (29%), Positives = 49/94 (52%)
Query: 1692 KLRKLYEQKKQIYREL-GVA-QVQEKKSY-EETKALKHKLRKSILKEAEIVVTTLSGCGG 1748
+ + L EQKKQ +E G++ Q++E + +E++AL +L+ A ++ TLS G
Sbjct: 1888 EFKNLLEQKKQFLKEREGLSRQIKECRGRRQESQAL-------VLQNAHVICCTLSTSGS 1940
Query: 1749 DLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQ 1782
+ E+ + G+ F V+IDEA+Q
Sbjct: 1941 ----IVLENAFR-RLGHEP----FSCVIIDEASQ 1965
Score = 59 (25.8 bits), Expect = 2.6e-10, Sum P(8) = 2.6e-10
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 1246 LKEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDFH 1305
LKEVPV F S ++ + PL+L ++ + +L+ + +Y L V +E +
Sbjct: 1520 LKEVPVNFSSYLEYFNTLYPLLLINAFEEMANEWLKEGRVK-LY---LKVQGIEYSNRTA 1575
Query: 1306 LVRFVHD-DNDSVTSKIF-SENDLVLL-----TRVSPQKTP--HDVH 1343
F+ + +I+ E+DLVLL T Q P HD+H
Sbjct: 1576 SASFIAGLSQECDVKQIYPKEDDLVLLWLPDNTGAYAQDEPNFHDLH 1622
Score = 54 (24.1 bits), Expect = 2.6e-10, Sum P(8) = 2.6e-10
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 985 DVDVEILDSETIASKSKDNL-IVVSDDE-IEKEPSVDQGLLSDFKSRQCVVVSKT 1037
DVD S I+ ++ ++ IV+SDDE + + + L S +K +C V +K+
Sbjct: 785 DVDSRATASSVISKQNTESTTIVISDDEDSDNDIRPNDPLRSSYK--ECTVKNKS 837
Score = 46 (21.3 bits), Expect = 2.6e-10, Sum P(8) = 2.6e-10
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 318 SPEFSHAVSCLRELFKMLGYKLWLRSTLSPSVMRNTLLG 356
S F A+ C + LG K+W + + P++ T+ G
Sbjct: 288 SDPFWPALHCFMVILDRLGSKIWAQ--VDPNMAFQTITG 324
Score = 43 (20.2 bits), Expect = 1.9e-09, Sum P(9) = 1.9e-09
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 477 DAAALVTSVLKSARPLRTETIISVEMNEDEDDLKFPFDPDVDEKDD-NSSWNEFTAQSR 534
D+ A +SV+ T +IS +DED D D+ D SS+ E T +++
Sbjct: 787 DSRATASSVISKQNTESTTIVIS----DDEDS-----DNDIRPNDPLRSSYKECTVKNK 836
Score = 42 (19.8 bits), Expect = 1.9e-09, Sum P(9) = 1.9e-09
Identities = 32/172 (18%), Positives = 55/172 (31%)
Query: 979 RPFPVKDVDVEILDSETIASKSKDNLIVVSDDEIEKEPSVDQGLLSDFKSRQCVVVSKTG 1038
+P K D K LI +I + P D + +
Sbjct: 985 KPLKTKVTKTTPSDKRDHLQVKKPVLIDALAQKIRRHPWKRSSTSEDMEEPSSSTTPSSS 1044
Query: 1039 APISDKRASQTESLKNRVSILDSSKDLLDGSGPASPKQVLDESVGKSLNSLDSKVVDGKK 1098
A +S +S + S S +S + +P V + V K + G K
Sbjct: 1045 A-VSSTSSSSSSSSSTPSSSSITSPYFSASTSRGTPAIVPPKKVRKIAEPESTAERLGLK 1103
Query: 1099 KESNSKFNASD-SLSFQNRVGLRNKPVESSSFKNVNQASSNVVAKPTNKLLK 1149
K+ F+ S SL R+ + V+ + +AS P +++K
Sbjct: 1104 KKERKAFDLSQRSLDCVARLRCHGQNVQVEPHQKRRRASRTSKTSPQKRMVK 1155
Score = 41 (19.5 bits), Expect = 6.7e-09, Sum P(9) = 6.7e-09
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 1124 VESSSFKNVNQAS-SNVVAKPTNKLLKELVCDVE--------NDPLESSFK 1165
+ESS ++A+ S+V++K + ++ D E NDPL SS+K
Sbjct: 779 LESSDSDVDSRATASSVISKQNTESTTIVISDDEDSDNDIRPNDPLRSSYK 829
Score = 40 (19.1 bits), Expect = 2.6e-10, Sum P(8) = 2.6e-10
Identities = 22/88 (25%), Positives = 38/88 (43%)
Query: 362 RSEKIHKDIFDLFPPFLQSLEALQD--GEHEKQRRHFL--------YFLLYQVPVSSNFS 411
+S +++ F F PF++S+ LQ+ + + H+L Y L Q V +
Sbjct: 404 QSMRVYGCTFLWFIPFVRSIMELQEHNASYISEIIHYLCDKIRDNRYMLTGQASVCDKVT 463
Query: 412 VLTAQMACKISLLIIHRGYK-MNPPCPP 438
L A++ +I L G + CPP
Sbjct: 464 ELFARIFIQIVELHYTEGQMGILSRCPP 491
Score = 39 (18.8 bits), Expect = 4.6e-07, Sum P(6) = 4.6e-07
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 19 EEEEELDDGND 29
EEEEE DD +D
Sbjct: 748 EEEEEDDDDDD 758
Score = 38 (18.4 bits), Expect = 6.7e-09, Sum P(9) = 6.7e-09
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 1063 KDLLDGSG-PASPKQVLDESVGKSLNSLDSKVVDGKKKESNSKFNASDSLS 1112
+D+ G P+ P VL + ++ + K GK +E S+ N SLS
Sbjct: 674 EDVFKGKKEPSDP--VLISELRPAVELTNIKPDLGKLQEIRSRLNDDQSLS 722
>DICTYBASE|DDB_G0268662 [details] [associations]
symbol:DDB_G0268662 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268662
Pfam:PF03828 GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0004386
eggNOG:COG1112 InterPro:IPR002058 ProtClustDB:CLSZ2429765
RefSeq:XP_646848.1 ProteinModelPortal:Q55F22
EnsemblProtists:DDB0304624 GeneID:8616531 KEGG:ddi:DDB_G0268662
InParanoid:Q55F22 Uniprot:Q55F22
Length = 2523
Score = 131 (51.2 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 64/267 (23%), Positives = 113/267 (42%)
Query: 1253 FQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWE-DMYYGSLSVLSVERVDD---FHLVR 1308
+ +FV++ +PL++EE++AQL F E+ G+L L +++D H R
Sbjct: 1384 YSDQSEFVNLMKPLIVEEYRAQLEGDFNEIEGVSISEQDGTLIGLDRVKMNDTPTIHSFR 1443
Query: 1309 FVHDDNDSVTSKIFSENDL--VLLTRVSPQKT-PHD---VHMVGKVXXXXXXXXXXXXIL 1362
+ +D ++ I +++L + L + KT H + +G V I+
Sbjct: 1444 ELSEDLVAIKFNIKVKDELEEIYLNDILLFKTFDHTSKPMFALGLVTSNSVLKGKKQ-II 1502
Query: 1363 LIRFYLQNGSVRLNQARRNLLERSKW-----HATLIMSITPQLREFHAXXXXXXXXXXXX 1417
+ F L + + L + ++ SK H + + T +RE A
Sbjct: 1503 ICEFVLSDSTKPLIEKFYSVSLNSKTSKDILHFIKVSNSTTFIRELEAPEIFKNSKTLLN 1562
Query: 1418 XXXXVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLI 1477
++ YN + + S L+ + N SQ A+ ++ ++LI
Sbjct: 1563 QILQPSLEV-YNLMTSMRMEIPSLLRSMCIQELNTSQFSAVETSLSTKG-------ITLI 1614
Query: 1478 QGPPGTGKTRTIVAIVSALLATRTSPK 1504
QGPPGTGKT TI ++S LLA +PK
Sbjct: 1615 QGPPGTGKTTTIYYLLSILLAI--NPK 1639
Score = 115 (45.5 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 28/92 (30%), Positives = 50/92 (54%)
Query: 1558 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDH 1617
++L+C S+A+VDE+ R K+ L DGK Y P +VR+G ++ + P+ +L D
Sbjct: 1641 KILVCGPSHASVDEVAKRCLKKSLVNIDGKPYLPNMVRIGKLQNISPDCHRI---SLFDK 1697
Query: 1618 RLAEERMHLTDPKNEFCTRSST----LRSNLE 1645
A+ + + + F T S++ +RSN +
Sbjct: 1698 TPAQRKAIIRNATIIFATLSASGSKPIRSNFK 1729
Score = 50 (22.7 bits), Expect = 6.5e-08, Sum P(4) = 6.5e-08
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 937 KVSLLCVSLSKESSRNSGKTLMSMAHFPEDLSVERKSA-ALDIRPFPVKDVDVEILDSET 995
K +L+ + L E S N + + H P + L+I+ +K +D+E L S+T
Sbjct: 637 KTTLVTIVLLIEFS-NLYQRITLKKHLPNPKRIHPSLFNLLEIQHQSLK-IDLEKLISQT 694
Query: 996 IASKSKDNLIVVSDDEIEKE 1015
I+S D + V S E++ E
Sbjct: 695 ISSNVLDFVPVPSKLELKSE 714
Score = 43 (20.2 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 19/71 (26%), Positives = 33/71 (46%)
Query: 364 EKIHKDIFDLFPPFLQSLEA-LQDGEHEKQRRHFLYFLLYQVPVSSNFSVLTAQMACKIS 422
++IH +F+L QSL+ L+ + + L F VPV S + + ++ I
Sbjct: 666 KRIHPSLFNLLEIQHQSLKIDLEKLISQTISSNVLDF----VPVPSKLELKSEKVLFNID 721
Query: 423 LLIIHRGYKMN 433
L + G+K N
Sbjct: 722 LFKLQIGHKNN 732
Score = 37 (18.1 bits), Expect = 6.5e-08, Sum P(4) = 6.5e-08
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 343 STLSPSVMRNTLLGQCFHTRSEKIHKDIFDLFPPFLQSLEALQD 386
ST SP+V ++ F +F +F LE +QD
Sbjct: 537 STKSPTV-ESSSSSTIFTMEPTTTEIIVFSIFYKIFYKLEGIQD 579
>DICTYBASE|DDB_G0268660 [details] [associations]
symbol:DDB_G0268660 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268660
Pfam:PF03828 GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0004386
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 InterPro:IPR002058
ProtClustDB:CLSZ2429765 RefSeq:XP_646847.2
ProteinModelPortal:Q55F23 EnsemblProtists:DDB0304625 GeneID:8616530
KEGG:ddi:DDB_G0268660 InParanoid:Q55F23 Uniprot:Q55F23
Length = 2314
Score = 133 (51.9 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 67/270 (24%), Positives = 112/270 (41%)
Query: 1253 FQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWE-DMYYGSLSVLSVERVDD---FHLVR 1308
+ +FV++ +PL++EE++AQL F E+ G+L L +++D H +
Sbjct: 1184 YSDQSEFVNLMKPLIVEEYRAQLEGDFDEIEGISISEQDGTLIGLDRVKMNDTPTIHSFQ 1243
Query: 1309 FVHDDNDSVTS--KIFSE------NDLVLLTRVSPQKTPHDVHMVGKVXXXXXXXXXXXX 1360
+ +D+ +T K+ E ND++L P + + V
Sbjct: 1244 ELSEDSVEITFNIKVKDELEEIYLNDILLFKAFDHTNKP--MFALSLVTRSSELKSKKQK 1301
Query: 1361 ILLIRFYLQNGSVRLNQARRNLLERSK------WHATLIMSITPQLREFHAXXXXXXXXX 1414
I+ F L + + L + ++ SK H + + T +RE A
Sbjct: 1302 IIC-EFVLSDSTKPLIEKFYSVSLNSKRYSKDILHFIKVSNSTTFIRELEATEEFKNSKT 1360
Query: 1415 XXXXXXXVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCEL 1474
++ YN + + S L+ I N SQ AI ++ KK +
Sbjct: 1361 LLNQILQPSLEV-YNLMTSMRMEIPSLLRSICIQELNASQFNAIETSLS-----KKG--I 1412
Query: 1475 SLIQGPPGTGKTRTIVAIVSALLATRTSPK 1504
+LIQGPPGTGKT TI ++S LLA +PK
Sbjct: 1413 TLIQGPPGTGKTTTIYYLLSILLAI--NPK 1440
Score = 113 (44.8 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 1558 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPN 1605
++L+C S+A+VDE+ R K+ L DGK Y P +VR+G ++ + P+
Sbjct: 1442 KILVCGPSHASVDEVAKRCLKKSLINVDGKPYLPNMVRIGKLQNISPD 1489
Score = 49 (22.3 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1718 YEETKALKHKLRKSILKEAEIVVTTLSGCG 1747
Y++T A RK I++ A IV +TLS G
Sbjct: 1496 YDKTPAQ----RKEIIRNANIVFSTLSASG 1521
Score = 42 (19.8 bits), Expect = 3.1e-07, Sum P(6) = 3.1e-07
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 243 EPMQPLLKKFIGFLETEVLT-STF 265
E +Q L+KK+ GF ++E+L+ TF
Sbjct: 372 EDIQGLIKKYPGF-KSELLSVETF 394
Score = 41 (19.5 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 898 ITCLLNLLKDSCSGTSLLTVSSIENLISSDHLDVDGLVEKV-----SLLCV-SLSKESSR 951
++ ++N + + T+ + V SI N + D+ GL++K LL V + KES
Sbjct: 341 VSKVINSQQQTKPTTTEIVVFSIFNKLFHRSEDIQGLIKKYPGFKSELLSVETFIKESQT 400
Query: 952 N 952
N
Sbjct: 401 N 401
Score = 41 (19.5 bits), Expect = 3.1e-07, Sum P(6) = 3.1e-07
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 344 TLSPSVMRNTLLGQCFHTRSEKIHKDIFDLFPPFLQSLEAL 384
T +P + + + T S I K IF LF F EA+
Sbjct: 615 TSTPKELLSNIPTVILKTPSN-IEKQIFSLFNTFFNKPEAI 654
Score = 37 (18.1 bits), Expect = 5.7e-08, Sum P(4) = 5.7e-08
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 1108 SDSLSFQNRVGLRNKPVESSSFKNVNQASSNVVAKPTNKLLKELV 1152
S+ LS + + ++S +NQ ++ +K +K E+V
Sbjct: 386 SELLSVETFIKESQTNIDSVKITTLNQLKKSLNSKINSKKFDEIV 430
Score = 37 (18.1 bits), Expect = 3.1e-07, Sum P(6) = 3.1e-07
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 588 MALDVRAWLSSSATEISSTFGWKAPT 613
+ LD + S++ +IS+T K PT
Sbjct: 838 LVLDYKDLSLSNSQKISNTTSSKTPT 863
>DICTYBASE|DDB_G0268914 [details] [associations]
symbol:DDB_G0268914 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
SMART:SM00382 dictyBase:DDB_G0268914 GO:GO:0005524
EMBL:AAFI02000004 GO:GO:0017111 eggNOG:COG1112 RefSeq:XP_647058.1
ProteinModelPortal:Q55EG2 EnsemblProtists:DDB0190122 GeneID:8616757
KEGG:ddi:DDB_G0268914 InParanoid:Q55EG2 OMA:ANCRVEN Uniprot:Q55EG2
Length = 4540
Score = 110 (43.8 bits), Expect = 1.1e-07, Sum P(7) = 1.1e-07
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1428 YNESRELDLGKL-SQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKT 1486
YN+S + D ++ + L+ + NESQL AI+ ++ SS ++LIQGPPGTGKT
Sbjct: 3534 YNQSGK-DRWEIPTLLKDHYNQTLNESQLAAINESLVHSS-------ITLIQGPPGTGKT 3585
Query: 1487 RTIVAIVSALLA 1498
TI +++S +LA
Sbjct: 3586 HTITSLISIILA 3597
Score = 109 (43.4 bits), Expect = 1.1e-07, Sum P(7) = 1.1e-07
Identities = 31/88 (35%), Positives = 47/88 (53%)
Query: 1558 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLV-D 1616
++L+C S+AAVDE+ R+ +GL G+ Y P +VR+G + P D V +
Sbjct: 3603 KILVCGPSHAAVDEVAKRVIIKGLLNDRGEKYIPTMVRIGLKDNIQD---PIVHDICVFN 3659
Query: 1617 HRLAEERMHLTDPKNEFCTRSSTLRSNL 1644
RL E++M L F T S++ SNL
Sbjct: 3660 RRLDEKKMILEHSSICFSTLSAS-GSNL 3686
Score = 62 (26.9 bits), Expect = 1.1e-07, Sum P(7) = 1.1e-07
Identities = 11/51 (21%), Positives = 34/51 (66%)
Query: 1252 CFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVD 1302
C+++ ++ + F+P+++EEF+ L ++F ++ + G++S +++R++
Sbjct: 3338 CYENHMEYKNSFKPILVEEFRKTLETNFNDIDGVKLADDGTIS--NLDRIN 3386
Score = 59 (25.8 bits), Expect = 8.8e-07, Sum P(7) = 8.8e-07
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 939 SLLCVSLSKESSRNSGKTLMSMAHFPEDLSVERKSAALDIRPFPVKDVDVE-----ILDS 993
S L SLS +++N+ ++ S + P +S + I+ P V V IL +
Sbjct: 2485 STLSSSLSNNNNKNNNNSIFS-SFPPMQISSSSPTTTSSIQILPTNGVKVAPHVNFILKT 2543
Query: 994 ETIASKSKDNLIVVSDDEIEKEP 1016
+ S S D +I+ D+ ++ P
Sbjct: 2544 IFLKSNSVDEIILTIDEMLKSYP 2566
Score = 58 (25.5 bits), Expect = 1.1e-07, Sum P(7) = 1.1e-07
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 501 EMNEDEDDLKFPFDPDVDEKDDN-SSWNEFTAQSRITSQ 538
E EDE+D + + D+D K++N ++ N+F ++I +Q
Sbjct: 1184 ENEEDEEDESY--ENDIDNKNNNKNNNNDFIVSNKIQNQ 1220
Score = 55 (24.4 bits), Expect = 1.1e-07, Sum P(7) = 1.1e-07
Identities = 24/90 (26%), Positives = 44/90 (48%)
Query: 1073 SPKQVLDESVGKSLNSLDSKVVDGKKKESNSKFNASDSLS-------FQNRVGLRNKPVE 1125
SP+ V DE + N+ D + D +N+ +N S+ + F+N++ LRN +
Sbjct: 2207 SPRLVFDECMNN--NNEDIEDYDDNNNNNNN-YNGSEGDNNQNNDQYFENKMSLRNNILP 2263
Query: 1126 SSSFK-NVNQASSNVVAKPTNKLLKELVCD 1154
K ++NQ +S + + + +LKE D
Sbjct: 2264 GELKKQHINQINS-LHSSNSCGILKEAFRD 2292
Score = 51 (23.0 bits), Expect = 1.1e-07, Sum P(7) = 1.1e-07
Identities = 33/142 (23%), Positives = 61/142 (42%)
Query: 958 MSMAHFPEDLSVERKSAALDIRPFPVKDVDVEILDSETIASKSKDNLIVVSDDEIEK-EP 1016
+S + + LS+ R+ ++ PV ++ D E I SK+ L + + K +P
Sbjct: 1536 LSRENIHKSLSIVREYI-FNVNGSPVYIPYLKFNDQEDI-SKTTQYLFLEVKSILNKIKP 1593
Query: 1017 SVDQGLLSDFKSRQCVVVS-----KTGAPISD--KRASQTESLKNRVSI-LDSSKDLLDG 1068
++D FKS+ ++S G P +S + SL S L L+
Sbjct: 1594 TIDDTRFGSFKSKLPNLISINIPNSNGIPFQHPFSSSSSSSSLSTTPSSPLKPINRLI-- 1651
Query: 1069 SGPASP-KQVLDESVGKSLNSL 1089
S P++P + + E + S+N +
Sbjct: 1652 SLPSTPIEPITQEGIVNSVNKI 1673
Score = 51 (23.0 bits), Expect = 2.5e-07, Sum P(7) = 2.5e-07
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 1095 DGKKKESNSKFNASDSLSFQNRVGLRNKPVESSSFKNVNQASSN 1138
+ K++ S+F+ +DS+S N + + N +++ N N ++N
Sbjct: 1876 ESNNKQNYSEFDDNDSISSSNNI-INNNNNNNNNNNNNNNNNNN 1918
Score = 44 (20.5 bits), Expect = 0.00034, Sum P(7) = 0.00034
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 344 TLSPSVMRNTLLGQCFHTRSEKIHKDIFDLFPP 376
T SPS+ +TL + ++ + IF FPP
Sbjct: 2478 TNSPSIS-STLSSSLSNNNNKNNNNSIFSSFPP 2509
Score = 43 (20.2 bits), Expect = 4.5e-05, Sum P(5) = 4.5e-05
Identities = 11/52 (21%), Positives = 28/52 (53%)
Query: 1079 DESVGKSLNSLDSKVVDGKKKESNSKFNASDSLSFQNRVGLRNKPVESSSFK 1130
D+ + ++ L +++V K +++ N +DS S N++ + P+ S + +
Sbjct: 181 DQDLSVVISQLFNEIVQSIKSTTSNN-NNNDSSSVNNQLQSPSLPIVSPTLQ 231
Score = 43 (20.2 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 503 NEDEDDLKFPFDPDVDEKDDNSSWN 527
N+D+DD D + D DDN+++N
Sbjct: 2821 NDDDDDNN---DEN-DNNDDNNNYN 2841
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(6) = 0.00012
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 81 DECHDSPLRLLWKRISGEMQHCIQ-CVSQHHQAQEMYSMEYESGVIGPLLDVLRS----- 134
D C D ++L +I E HC Q + + E + +Y S ++ L+ RS
Sbjct: 2609 DLCEDIYQKILSFKILIETSHCYQRLLLKEILESENDTDQYYS-ILEQLIQHQRSRKLLF 2667
Query: 135 --LDEERVTKYLREINAR 150
+ T+Y +E N R
Sbjct: 2668 QDFSNHKFTEYTKEFNYR 2685
Score = 39 (18.8 bits), Expect = 1.1e-07, Sum P(7) = 1.1e-07
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 23 ELDDGNDPLKRRRIDGLKEKWFADAFNFLIGLPEKNHIWCGSWDIMGPYLEL-----FYN 77
E D D +RI +K+K F D FN L E + + + + ++ L F N
Sbjct: 48 ESKDEQDRTFEQRIAAIKKKAFDD-FNELSESDEASQL---DFQLYNKFIRLRVMIEFSN 103
Query: 78 YFKDEC 83
++ +C
Sbjct: 104 EYQKKC 109
Score = 39 (18.8 bits), Expect = 5.8e-06, Sum P(7) = 5.8e-06
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 497 IISVEMNEDEDDLKFPFDPDVDEKDDNSSW 526
I++ E + D+DD D + +E +++ S+
Sbjct: 1165 IVNDENDNDDDDEDEDEDEENEEDEEDESY 1194
Score = 38 (18.4 bits), Expect = 7.1e-06, Sum P(7) = 7.1e-06
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 134 SLDEERVTKYLREINARLAHQEYYPQ-IDNNQVI 166
S+ EER+ L IN+++ + Q I +N +I
Sbjct: 1340 SIREERINNELAIINSKINNLTLQQQKIQSNGLI 1373
Score = 37 (18.1 bits), Expect = 8.8e-07, Sum P(7) = 8.8e-07
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 897 TITCLLNLLKDSCSGTSLLTVSSIENLISSDH 928
T T S SLL+ S++ +S DH
Sbjct: 1968 TATTTTTTTPSQISNQSLLSSISLKTKLSLDH 1999
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(6) = 0.00015
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 1312 DDNDSVTSK--IFSEND 1326
DDNDS++S I + N+
Sbjct: 1887 DDNDSISSSNNIINNNN 1903
>DICTYBASE|DDB_G0268924 [details] [associations]
symbol:DDB_G0268924 "Helicase SEN1" species:44689
"Dictyostelium discoideum" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268924
GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0017111 eggNOG:COG1112
ProtClustDB:CLSZ2429765 RefSeq:XP_646844.2
ProteinModelPortal:Q55F26 EnsemblProtists:DDB0202279 GeneID:8616527
KEGG:ddi:DDB_G0268924 InParanoid:Q55F26 Uniprot:Q55F26
Length = 1772
Score = 122 (48.0 bits), Expect = 2.5e-07, Sum P(5) = 2.5e-07
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 1558 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPN--SLPFFIDT 1613
++L+C S+A+VDE+ R SK+ L G DGK Y P +VR+G + + P+ S+ F T
Sbjct: 1290 KILVCGPSHASVDEIAKRCSKKKLIGLDGKPYLPNMVRIGKKENISPDCHSISIFNKT 1347
Score = 89 (36.4 bits), Expect = 2.5e-07, Sum P(5) = 2.5e-07
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 1440 SQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLA 1498
S L+ + N SQ +I ++ ++LIQGPPGTGKT TI ++S LLA
Sbjct: 1233 SLLRSMCIQELNTSQFNSIETSLSTKG-------ITLIQGPPGTGKTTTIYYLLSILLA 1284
Score = 71 (30.1 bits), Expect = 2.5e-07, Sum P(5) = 2.5e-07
Identities = 26/102 (25%), Positives = 54/102 (52%)
Query: 1246 LKEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMS----SWED----------MYYG 1291
++ + + + E+++ + +PL++EE++ QL F E+ S +D M G
Sbjct: 1018 IRNLKSSYSNHEEYMDLMKPLIVEEYRKQLAGEFDEIEGVSISEKDGTLIGLDKIKMIDG 1077
Query: 1292 SLSVLSVERVDDFHLVRFVHDDNDSVTSKIFSENDLVLLTRV 1333
++ S + + D+ +++F D ND + ++F ND VLL +V
Sbjct: 1078 P-TIHSFKEISDYSIMKFEIDVNDG-SQELFY-ND-VLLFKV 1115
Score = 46 (21.3 bits), Expect = 2.5e-07, Sum P(5) = 2.5e-07
Identities = 27/103 (26%), Positives = 47/103 (45%)
Query: 1097 KKKESNSKFNASDSLS-FQNRVGLRNKPVESSSFKNVNQASSNVVAKP-----TNKLLKE 1150
K S +K + +S++ F+N L++ + S FK + N+++KP TNK
Sbjct: 197 KNHFSQTKSSKKNSINDFKNH--LKSSGI-SIKFKKIGTFDPNLISKPYIFTPTNKTESY 253
Query: 1151 LVCDVENDPLESSFKSGKHQQTYLTKSGPFVPK-RQVIQLKSP 1192
++ D PL + S + Y K G + + + I L SP
Sbjct: 254 MIPDFSL-PLPNQTVSNYIKSLY-PKLGVLLTQLNETINL-SP 293
Score = 38 (18.4 bits), Expect = 2.5e-07, Sum P(5) = 2.5e-07
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1736 AEIVVTTLSGCGGD 1749
A IV +TLSG G +
Sbjct: 1358 ASIVFSTLSGSGSE 1371
>DICTYBASE|DDB_G0289529 [details] [associations]
symbol:DDB_G0289529 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR002934
InterPro:IPR003593 Pfam:PF01909 SMART:SM00382
dictyBase:DDB_G0289529 GO:GO:0005524 EMBL:AAFI02000141
GO:GO:0017111 eggNOG:COG1112 GO:GO:0016779 RefSeq:XP_636183.1
ProteinModelPortal:Q54HF4 EnsemblProtists:DDB0219440 GeneID:8627170
KEGG:ddi:DDB_G0289529 InParanoid:Q54HF4 ProtClustDB:CLSZ2429765
Uniprot:Q54HF4
Length = 1677
Score = 108 (43.1 bits), Expect = 8.7e-05, Sum P(4) = 8.7e-05
Identities = 59/261 (22%), Positives = 107/261 (40%)
Query: 1253 FQSPEQFVSIFRPLVLEEFKAQLHSSFLEM----SSWEDMYYG--------SLSVLSVER 1300
+ +++ + +PL+ ++F+AQ+ + + S+ + + G ++ V+ + R
Sbjct: 993 YTGEKEYQIVNKPLIFDDFRAQVENGINALNGINSAKDGTFEGFDKIKMNEAIEVVQISR 1052
Query: 1301 VDDFHLVRFVHDDNDSVTSKIFSENDLVLLTRVSPQKTPHDVHMVGKVXXXXXXXXXXXX 1360
F V + N + +I S D++L + T +V K
Sbjct: 1053 QTKFITVELIIHGNRNKLEEI-SVGDILLFKVIGLDGTKFTFGIVRKTSNLMQGSLHQQS 1111
Query: 1361 ILLIRFYLQNGSVRLNQARRNLLERSKWHATLIMSIT--PQLREFHAXXXXXXXXXXXXX 1418
I+ Y N + ++ + + S + + S+T ++EF A
Sbjct: 1112 IVCDLLY-SNPTHFFTKSLNSSTQSSIHYNKISNSVTFIRSIQEFKASPFIKNLIF---- 1166
Query: 1419 XXXVNVSRGYNESRELDLGKLSQ-LQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLI 1477
+ G N + + K L+ I K NESQL AI ++ S ++LI
Sbjct: 1167 ------NPGCNNNLNQKMMKFPPTLETICKEKLNESQLNAIKSSLVESG-------ITLI 1213
Query: 1478 QGPPGTGKTRTIVAIVSALLA 1498
QGPPGTGKT TI ++S LLA
Sbjct: 1214 QGPPGTGKTTTINYLLSVLLA 1234
Score = 100 (40.3 bits), Expect = 8.7e-05, Sum P(4) = 8.7e-05
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 1558 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHP 1604
++L+C S+A+VDE+ R K L SDG+ +KP +VR G + + P
Sbjct: 1240 KILVCGPSHASVDEVAKRCLKN-LLNSDGQIFKPNMVRTGRKEKISP 1285
Score = 44 (20.5 bits), Expect = 8.7e-05, Sum P(4) = 8.7e-05
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 503 NEDEDDLKFPFDPDVDEKDDNSSWNEFTAQSRITSQEF 540
N+D+DD D D D+ DD ++ +E T + I +EF
Sbjct: 242 NDDDDD-----DDDDDDDDDENN-DEITIFNNIY-KEF 272
Score = 42 (19.8 bits), Expect = 8.7e-05, Sum P(4) = 8.7e-05
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 1662 KDGNSDPKNMLDDEVHKGDDVKLSD 1686
K GN + + D+E+ DD ++ +
Sbjct: 1640 KGGNDEEDDFYDEEMDNNDDDEMDN 1664
Score = 38 (18.4 bits), Expect = 0.00032, Sum P(4) = 0.00032
Identities = 34/141 (24%), Positives = 60/141 (42%)
Query: 1097 KKKESNSKFNASDSLSFQNRVGLRNKPVESSSFKNVNQASSNVVAKPTNKLLKELVCDVE 1156
K+ + N + DS F+N+ + +E + K+ + S + KLL L ++
Sbjct: 13 KEIDINDQIQVIDS--FKNQ--FKGNEIELNLMKDFVKKSKSRRDGLLGKLLHSLKAMLK 68
Query: 1157 NDPLESSFKSGKHQQTYLTK----SGPFVPKRQVIQ--LKSPFEN--RCG--LHRMET-- 1204
N ES KS YL F +R+ ++ K+ N +C L +++
Sbjct: 69 NQSNES-IKSSIFYNQYLVLRMVIEFNFFCQRKYLKEHCKAYGLNFSKCSAILESVQSRF 127
Query: 1205 GVKRFGPPKLDDWYKPILEID 1225
G+K+ L ++ KPI ID
Sbjct: 128 GIKKIFTRNLSEFSKPIEIID 148
>CGD|CAL0006154 [details] [associations]
symbol:orf19.6199 species:5476 "Candida albicans" [GO:0043141
"ATP-dependent 5'-3' DNA helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0033203 "DNA helicase
A complex" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR004483 SMART:SM00382
CGD:CAL0006154 GO:GO:0005524 GO:GO:0003677 GO:GO:0017111
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 EMBL:AACQ01000038
EMBL:AACQ01000037 TIGRFAMs:TIGR00376 RefSeq:XP_718706.1
RefSeq:XP_718790.1 ProteinModelPortal:Q5AAW1 STRING:Q5AAW1
GeneID:3639532 GeneID:3639630 KEGG:cal:CaO19.13579
KEGG:cal:CaO19.6199 Uniprot:Q5AAW1
Length = 719
Score = 93 (37.8 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 1684 LSDVE-LEAKLRKL--YEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKSILKEAEIVV 1740
L+D++ + K++K Y ++K +Y EL + KK E + + K+ +L +A++VV
Sbjct: 328 LNDIQSVLTKIKKCKKYGERKALYSELKLL----KK---ELRQRERKIVNELLVQAQVVV 380
Query: 1741 TTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQ 1782
TL G G Y + SV N +E +FD ++IDE +Q
Sbjct: 381 ATLHGSGS--YEL-KNSVGT----NNNEGIVFDTIIIDEVSQ 415
Score = 87 (35.7 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 1451 NESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSAL 1496
N SQ QAI AI D +++I GPPGTGKT T++ ++ L
Sbjct: 223 NASQRQAIDFAIN-------DSNITIIHGPPGTGKTYTLIELIQQL 261
Score = 56 (24.8 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 1558 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPY-LVRVGN 1598
+VL+C SN +VD ++ R+ G Y+P L+R+G+
Sbjct: 267 KVLVCGPSNISVDTILERL---------GDKYEPMKLIRIGH 299
Score = 42 (19.8 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 926 SDHLDVDGLVEKVSLLCVSLSKESSRNSGKTL 957
SD + ++ +V KVS +S+S + S + K L
Sbjct: 116 SD-VGIEAVVIKVSTQTISISVDESTDDSKIL 146
Score = 40 (19.1 bits), Expect = 0.00016, Sum P(4) = 0.00015
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 1292 SLSVLSVERVDDFHLVRFVHDDNDS-------VTSKIFSENDLVLLTRVSPQKTP--HDV 1342
++S+ E DD ++++ ++ NDS +T+ I + + + +V K +D+
Sbjct: 131 TISISVDESTDDSKILQYYNNTNDSARMWLVKLTNSITYKRMITTMDKVLAMKESDKNDI 190
Query: 1343 HMV 1345
H +
Sbjct: 191 HKI 193
>UNIPROTKB|Q5AAW1 [details] [associations]
symbol:HCS1 "Putative uncharacterized protein HCS1"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR004483 SMART:SM00382 CGD:CAL0006154 GO:GO:0005524
GO:GO:0003677 GO:GO:0017111 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:AACQ01000038 EMBL:AACQ01000037
TIGRFAMs:TIGR00376 RefSeq:XP_718706.1 RefSeq:XP_718790.1
ProteinModelPortal:Q5AAW1 STRING:Q5AAW1 GeneID:3639532
GeneID:3639630 KEGG:cal:CaO19.13579 KEGG:cal:CaO19.6199
Uniprot:Q5AAW1
Length = 719
Score = 93 (37.8 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 1684 LSDVE-LEAKLRKL--YEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKSILKEAEIVV 1740
L+D++ + K++K Y ++K +Y EL + KK E + + K+ +L +A++VV
Sbjct: 328 LNDIQSVLTKIKKCKKYGERKALYSELKLL----KK---ELRQRERKIVNELLVQAQVVV 380
Query: 1741 TTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQ 1782
TL G G Y + SV N +E +FD ++IDE +Q
Sbjct: 381 ATLHGSGS--YEL-KNSVGT----NNNEGIVFDTIIIDEVSQ 415
Score = 87 (35.7 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 1451 NESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSAL 1496
N SQ QAI AI D +++I GPPGTGKT T++ ++ L
Sbjct: 223 NASQRQAIDFAIN-------DSNITIIHGPPGTGKTYTLIELIQQL 261
Score = 56 (24.8 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 1558 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPY-LVRVGN 1598
+VL+C SN +VD ++ R+ G Y+P L+R+G+
Sbjct: 267 KVLVCGPSNISVDTILERL---------GDKYEPMKLIRIGH 299
Score = 42 (19.8 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 926 SDHLDVDGLVEKVSLLCVSLSKESSRNSGKTL 957
SD + ++ +V KVS +S+S + S + K L
Sbjct: 116 SD-VGIEAVVIKVSTQTISISVDESTDDSKIL 146
Score = 40 (19.1 bits), Expect = 0.00016, Sum P(4) = 0.00015
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 1292 SLSVLSVERVDDFHLVRFVHDDNDS-------VTSKIFSENDLVLLTRVSPQKTP--HDV 1342
++S+ E DD ++++ ++ NDS +T+ I + + + +V K +D+
Sbjct: 131 TISISVDESTDDSKILQYYNNTNDSARMWLVKLTNSITYKRMITTMDKVLAMKESDKNDI 190
Query: 1343 HMV 1345
H +
Sbjct: 191 HKI 193
>POMBASE|SPCC737.07c [details] [associations]
symbol:SPCC737.07c "DNA polymerase alpha-associated DNA
helicase A (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006273
"lagging strand elongation" evidence=ISO] [GO:0033203 "DNA helicase
A complex" evidence=ISO] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=ISO] [GO:0043596 "nuclear replication
fork" evidence=IC] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISO] InterPro:IPR003593 SMART:SM00382
PomBase:SPCC737.07c GO:GO:0005829 GO:GO:0005524 EMBL:CU329672
GenomeReviews:CU329672_GR eggNOG:COG1112 GO:GO:0006273
GO:GO:0043141 PIR:T41580 RefSeq:NP_588369.1
ProteinModelPortal:O94247 STRING:O94247 EnsemblFungi:SPCC737.07c.1
GeneID:2539412 KEGG:spo:SPCC737.07c HOGENOM:HOG000185831
OMA:ERTIFLE OrthoDB:EOG444PTN NextBio:20800576 GO:GO:0033203
Uniprot:O94247
Length = 660
Score = 93 (37.8 bits), Expect = 0.00082, Sum P(3) = 0.00082
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 1451 NESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1497
N SQ +A+ +I + ELSLI GPPGTGKT T+V I+ L+
Sbjct: 211 NASQKKAVKFSIAVK-------ELSLIHGPPGTGKTHTLVEIIQQLV 250
Score = 75 (31.5 bits), Expect = 0.00082, Sum P(3) = 0.00082
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 1558 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTL 1614
R+L+C SN AVD +V R+S G+ P +VR+G+ + P+ L +D L
Sbjct: 255 RILVCGASNLAVDNIVDRLSSSGI---------P-MVRLGHPARLLPSILDHSLDVL 301
Score = 56 (24.8 bits), Expect = 0.00082, Sum P(3) = 0.00082
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 1713 QEKKSYEETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLF 1772
+ ++ Y+ + L+ RK K +V+ L+G S + G +F
Sbjct: 333 ERREIYKNIRELRKDYRKYEAKTVANIVSASKVVFCTLHGAGSRQLKGQRF--------- 383
Query: 1773 DAVVIDEAAQVV 1784
DAV+IDEA+Q +
Sbjct: 384 DAVIIDEASQAL 395
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1789 1708 0.00089 125 3 11 22 0.38 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 639 (68 KB)
Total size of DFA: 721 KB (2309 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 150.43u 0.87s 151.30t Elapsed: 00:00:07
Total cpu time: 150.45u 0.87s 151.32t Elapsed: 00:00:08
Start: Tue May 21 02:06:02 2013 End: Tue May 21 02:06:10 2013