BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000248
(1789 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 147/593 (24%), Positives = 257/593 (43%), Gaps = 147/593 (24%)
Query: 1212 PKLDDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEF 1271
P + ++YK IL + A AS+ V + + + + +F+P++ E
Sbjct: 1057 PDVQEFYKVILGWNPLADSFSASN------VEMQCVQAKFTYNDSNAYEKVFKPMLFHEC 1110
Query: 1272 KAQLHSSFLEMSSWEDMYYGSLSVLSVER--VDDFHLVRFVHDDNDSVTSKIFSENDLVL 1329
AQ+ S+ E+ Y + ++ R VD+F + F V+ S+ D+ L
Sbjct: 1111 WAQVKSAV------EEKQYPPIDLILNTRSTVDNFVDIYFTSCSPTEVS--FLSDTDICL 1162
Query: 1330 LTRVSPQKTPHDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARRNLLERSKWH 1389
L++ ++ + + + S L +R ++ S+ L + N+ ++
Sbjct: 1163 LSKSQSSGDTNNPKSFQLCKIQSISRKKESLELCLRMNIE--SIDLQEYAPNI----RFT 1216
Query: 1390 ATLIMSITPQLREFHALSSLKSIPLLPIILNPVNVSR---GYNESRELDLGKLSQLQQIL 1446
A + + T LREF AL SL+ +PL IL+ NV+R + + ++ Q+I+
Sbjct: 1217 AQKLFNATTSLREFAALKSLRHLPLSQRILD-ANVTRLPSNFTDDKK---------QKIM 1266
Query: 1447 KT-SFNESQLQAI---SVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTS 1502
K+ NE Q AI SV G + LIQGPPGTGKT+TI+ ++ A+L TS
Sbjct: 1267 KSYGVNEPQAYAIYASSVNDGFT----------LIQGPPGTGKTKTILGMIGAVL---TS 1313
Query: 1503 PKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALARQINEDSERDKKSSESSVRARVLIC 1562
L+ N GQ+ +K+S++ ++LIC
Sbjct: 1314 SSQGLQFNVP---------GQT-----------------------RKTSKN----KILIC 1337
Query: 1563 AQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEE 1622
A SNAA+DE++ RI K G+Y +G + P ++RVG F D++ H
Sbjct: 1338 APSNAAIDEILLRI-KAGVYDHEGIKFFPKVIRVG------------FGDSISVH----- 1379
Query: 1623 RMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDV 1682
+ TL E+++ ++ K+ + +SD + D + K D +
Sbjct: 1380 ------------AKEFTLE---EQMIKQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSL 1424
Query: 1683 KLSDVE-----------LEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKS 1731
+ D+E LEA+LR++ +QK + + L + +++ + LK +++
Sbjct: 1425 R-EDLEKFRSTGKNSSILEAQLREITKQKNMLEQSLDDMRERQRSTNRNLDVLKKQIQNQ 1483
Query: 1732 ILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1784
+L+EA+IV TLS G +L + F V+IDEAAQ V
Sbjct: 1484 LLQEADIVCATLSASGHELL--------------LNAGLTFRTVIIDEAAQAV 1522
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 28/141 (19%)
Query: 90 LLW--KRISGEMQHCIQCVSQHHQAQEMYS------MEYESGVIGPLLDVLRSLDEERVT 141
L+W K ++ +Q C +C+ ++HQ+ + + ++ + +++ + S D R+
Sbjct: 72 LVWFKKHLNERLQLCPKCIVKYHQSLDDFKSLCLNIFHFDPNTLEIVMEKIYSWDIFRLQ 131
Query: 142 KYLREINARLAHQEYYPQIDNNQ----VICIMYEVLMFPVLLDDQSLFTEFET-FIEAVD 196
+ L+ + P+ID + ++C YE+L P +L ++ +F F F+E+
Sbjct: 132 EVLKTV----------PKIDTSSASKPILCAFYEILYSPRILHNKEIFPLFRNRFLES-- 179
Query: 197 NMHELALDGHQLFPGVFALFF 217
L PGV +L F
Sbjct: 180 ---GFLRLSKNLVPGVISLLF 197
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 144/555 (25%), Positives = 231/555 (41%), Gaps = 132/555 (23%)
Query: 1253 FQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHLVRFVHD 1312
F SP + + +PL+L E L SS ED S+ V + V DF+ V +
Sbjct: 1147 FNSPADYQKVMKPLLLLESWQGLCSS----RDREDYKPFSIIVGNRTAVSDFYDV-YASV 1201
Query: 1313 DNDSVTSKIFSENDLVLLT---------RVSPQKTPHDVHMVGKVERRERDNNRRSSILL 1363
+ SE+DL+++ R+S H R ++ + +
Sbjct: 1202 AKQVIQDCGISESDLIVMAYLPDFRPDKRLSSDDFKKAQHTCLAKVRTLKNTKGGNVDVT 1261
Query: 1364 IRFYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSIPLLPIILN--- 1420
+R + R + + L RS+ + +M +T RE+ L L+ L+ IL
Sbjct: 1262 LRIH------RNHSFSKFLTLRSEIYCVKVMQMTTIEREYSTLEGLEYYDLVGQILQAKP 1315
Query: 1421 --PVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQ 1478
PVNV D ++ +++ K N SQ +AI ++ SLIQ
Sbjct: 1316 SPPVNV----------DAAEIETVKKSYK--LNTSQAEAIVNSVSKEG-------FSLIQ 1356
Query: 1479 GPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALAR 1538
GPPGTGKT+TI+ I+ L+T+ + S++
Sbjct: 1357 GPPGTGKTKTILGIIGYFLSTKNASSSNV------------------------------- 1385
Query: 1539 QINEDSERDKKSSESSVRA-RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVG 1597
I E++ ++E ++ ++LICA SNAAVDE+ R+ K G+Y G +KP LVRVG
Sbjct: 1386 -IKVPLEKNSSNTEQLLKKQKILICAPSNAAVDEICLRL-KSGVYDKQGHQFKPQLVRVG 1443
Query: 1598 NVKTVHPNSLPFFIDTLVDHRLAEERMHL-TDPK-----NEFCTRSSTLRSNLEKLVDRI 1651
V+ ++ LVD R+ E + TDP+ N T+ LR L+
Sbjct: 1444 RSDVVNVAIKDLTLEELVDKRIGERNYEIRTDPELERKFNNAVTKRRELRGKLD------ 1497
Query: 1652 RFFEAKRANTKDGNSDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYRELG--V 1709
++ GN P++ + E D+ +L+ K+R+L +I ELG
Sbjct: 1498 ---------SESGN--PESPMSTE-----DIS----KLQLKIREL----SKIINELGRDR 1533
Query: 1710 AQVQEKKS--YEETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPS 1767
+++EK S Y + + IL ++I+ +TLSG D+ G K
Sbjct: 1534 DEMREKNSVNYRNRDLDRRNAQAHILAVSDIICSTLSGSAHDVLATM-----GIK----- 1583
Query: 1768 ENTLFDAVVIDEAAQ 1782
FD V+IDEA Q
Sbjct: 1584 ----FDTVIIDEACQ 1594
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 146/599 (24%), Positives = 254/599 (42%), Gaps = 115/599 (19%)
Query: 1192 PFENRCGLHRMETGVKRFGPPKLDDWYKPILEIDYFATVGLASSREDENRV---HCKLKE 1248
P + R +R VK P + D+YK IL + + + N V H +
Sbjct: 895 PSQIRMMTNRNVANVKARLFPSMTDFYKEILSWE--------PANQSPNPVLKFHKLDGK 946
Query: 1249 VPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVER--VDDFHL 1306
+ F++ E ++ + +P++ E +Q+ S+ L D+ + + + VER V++F
Sbjct: 947 IIDSFKTVEHYMEVLQPMIFMECWSQIQSTKL------DLKFSPVEGIMVERTAVNNFVD 1000
Query: 1307 VRFVHDDNDSVTSKIFSENDLVLLTRVSPQKTPHDVHMVGKVERRERDNNRRSSILLIRF 1366
+ D ++ + L + + KVER R N +L++
Sbjct: 1001 IGVSVAPKDLYGYPLYDTEVVSLAFNKEDASSMKGLCCFAKVERIVRQTN---GVLVVLR 1057
Query: 1367 YLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSIPLLPIILNPVNVSR 1426
L + + LN+ + N + W L ++ R++ + L L I+ S+
Sbjct: 1058 TLPSMEI-LNKLQGNC---ALWFLKL-TNLATFTRQYAGIRGLPYFHLADDIIRARPCSQ 1112
Query: 1427 GYNESRELDLGKLSQLQQILK-TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGK 1485
S S+++ +K NE Q +AI A+ + +LIQGPPGTGK
Sbjct: 1113 PVKHSS-------SEIKAAMKRYQVNEPQAKAIMCALD-------NNGFTLIQGPPGTGK 1158
Query: 1486 TRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALARQINEDSE 1545
T+TI+ I+SALL + + H+ +RP N+ S
Sbjct: 1159 TKTIIGIISALLVDLS--RYHI---------TRP---------------------NQQS- 1185
Query: 1546 RDKKSSESSVRARVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPN 1605
KS+ES + ++L+CA SNAAVDE++ R+ K G +G+ Y P +VR+GN +T++ +
Sbjct: 1186 ---KSTES--KQQILLCAPSNAAVDEVLLRL-KRGFLLENGEKYIPRVVRIGNPETINVS 1239
Query: 1606 SLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGN 1665
++ + +L E D + + R + +I E + +D
Sbjct: 1240 VRDLSLEYQTEKQLLEVNQGAIDLGS--LQELTRWRDTFYDCIQKIEELEKQIDVARDVA 1297
Query: 1666 SDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALK 1725
D K++ + +K ++ L++ ++E EL Q Q +E L+
Sbjct: 1298 EDTKSLGKELQNKINEKNLAEQKVE---------------EL---QSQSFTKNKEVDLLR 1339
Query: 1726 HKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1784
K +K+ILK+A++V TLSG G DL S + F V+IDEAAQ V
Sbjct: 1340 KKAQKAILKQADVVCATLSGSGHDLVAHSSLN--------------FSTVIIDEAAQAV 1384
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 206/466 (44%), Gaps = 84/466 (18%)
Query: 1217 WYKPILEIDYFATVGLASSREDENRVHCK--LKEVPVCFQSPEQFVSIFRPLVLEEFKAQ 1274
+Y IL DY L E +NR K L V ++ + + F PL+ EE KAQ
Sbjct: 19 FYNIILGWDYKQ---LTKENERKNRKDSKEKLNVVKNTYKDVDDYFETFEPLLFEEVKAQ 75
Query: 1275 LHSSFLEMSSWEDMYYGSLS-VLSVERVDDFH--LVRFVHDDNDSVTSKIFSENDLVLLT 1331
+ L+ E+ + V+ + FH LV + H++++ ++NDL+LL+
Sbjct: 76 I----LQNKDGEEASVCKMRLVMECNEGEGFHFLLVTYEHEEDE-----YLAQNDLLLLS 126
Query: 1332 R--VSPQKTPHDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARRNLLERSKWH 1389
+ V P + VE +R++++L +R YL V++ + ++ +S
Sbjct: 127 KEEVKGNSFPSS-YGFAVVE------HRQNNLLRLRMYLAEDIVQITKNTKSSRTKSFIQ 179
Query: 1390 A-----TLIMS----------------ITPQLREFHALSSLKSIPLLPIILNPVNVSRGY 1428
A +LI S ++ +RE+ AL S+ S+P +I S G+
Sbjct: 180 ALSNMRSLITSSASPIDKRVFSLKLCGLSTIIREYIALRSVSSLPFKDLIFTAAEKSCGF 239
Query: 1429 NESRELDLGKLSQ-LQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTR 1487
+ + K+S L + + N+SQ +AI V + S LIQGPPGTGKT+
Sbjct: 240 GD----EAWKISGPLNEFFNENLNKSQKEAIDVGLSRKS-------FVLIQGPPGTGKTQ 288
Query: 1488 TIVAIVSALL-ATRTSPKSH-------------LKQNYSSCINSRPKI----GQSAAIAR 1529
TI++I+ A++ AT +S +++ Y+ + P I + A +
Sbjct: 289 TILSILGAIMHATPARVQSKGTDHEVKRGIQMTIQEKYNHWGRASPWILGVNPRDAIMPE 348
Query: 1530 AWQDAALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGLYGSDGKTY 1589
D NE +S R RVL+CA SN+A+DE+V R+ GL + +TY
Sbjct: 349 DGDDGFFPTSGNELKPEVVNASRK-YRLRVLVCAPSNSALDEIVLRLLSSGLRDENAQTY 407
Query: 1590 KPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCT 1635
P +VR+G +K H +DH +A++R D + T
Sbjct: 408 TPKIVRIG-LKAHHS-----VASVSLDHLVAQKRGSAIDKPKQGTT 447
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 140/563 (24%), Positives = 227/563 (40%), Gaps = 126/563 (22%)
Query: 1247 KEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHL 1306
+ VPV FQ ++ ++F PL++ + +L + E+ Y L + +
Sbjct: 1712 RPVPVRFQDCAEYFNVFLPLIILNAFETVAQEWLSSPNKENFYQLQLRKFPADYKKYWEF 1771
Query: 1307 VRFVHDDNDSVTSKIF--SENDLVLLTRVSPQKTPHDVH--------MVGKVERRERDNN 1356
+ ++ N+S +K ENDLV L +P+K+ D H G V + R +
Sbjct: 1772 LIYL---NESELAKQLHPKENDLVFL---APEKSYMDRHGMQDCSHYYCGYVHKFRRTSV 1825
Query: 1357 RRSSILLIRFYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSIPLLP 1416
RS +Q L + +NL +I S+ R+ A+S L S L
Sbjct: 1826 MRSGKAECSLCIQTQDT-LPASVKNLT-----RCIVISSLVTTQRKLKAMSLLSSRNQLA 1879
Query: 1417 -IILNPVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELS 1475
+LNP + +++L ++ LK FNE Q +AI A + ++
Sbjct: 1880 RAVLNPNPMDFC---TKDLLTTTSERIVAYLK-DFNEDQKKAIETAYAMVKHSPSVAKIC 1935
Query: 1476 LIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAA 1535
LI GPPGTGK++TIV ++ LL T K H +N+++ KI Q+
Sbjct: 1936 LIHGPPGTGKSKTIVGLLYRLL-TENQRKGHSDENFNA------KIKQN----------- 1977
Query: 1536 LARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRI---------SKEGLYGSDG 1586
RVL+CA SNAAVDEL+ +I K+ G+ G
Sbjct: 1978 ----------------------RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCG 2015
Query: 1587 KTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEK 1646
LVR+G K+++ L F +D+ V+HR+ ++ L E R L + L++
Sbjct: 2016 DI---NLVRLGPEKSINTEVLKFSLDSQVNHRMKKD---LPSHIQEMLRRKEILDAQLDE 2069
Query: 1647 LVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYRE 1706
L +RA + G + LD+ + V EL +K++
Sbjct: 2070 L-------SRQRALCRGGREMQRQELDEHIAI---VSKERQELASKIK------------ 2107
Query: 1707 LGVAQVQEKKSYEETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNP 1766
E + + + +I+ E+ ++ TLS GG L ES + G P
Sbjct: 2108 -------------EVQGRPQRAQNTIILESHVICCTLSTSGGLLL----ESAFRGQGGVP 2150
Query: 1767 SENTLFDAVVIDEAAQVVLVHEL 1789
F V++DEA Q V L
Sbjct: 2151 -----FSCVIVDEAGQSCEVETL 2168
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 124/285 (43%), Gaps = 57/285 (20%)
Query: 98 EMQHCIQCVSQHHQAQEMYSMEYESGVIGPLLDVLRSLDEER-VTKYLREINARLAHQEY 156
++ +C++CV+++H+A++ +E VL L+ R V+ + + + A +
Sbjct: 36 DLCYCLECVAEYHRARDEVPFLHE---------VLWELETLRLVSHFEKSMKAEAEDDDD 86
Query: 157 YPQIDN---------------NQVICIMYEVLMFPVLLDDQSLFTEFETFIEAVDNMHE- 200
+DN N++ ++E+L +P LL + + E +EA+ M +
Sbjct: 87 LYIVDNNGEEQLFDCSGQDFENKLRVPLFEILKYPYLLLHERV---NELCVEALCRMEQN 143
Query: 201 -LALDGHQLFPGVFALFFF-NRRVRTIGRRLARSMGKLRRAT--DLEPMQPLLKKFI--G 254
+ +PG++ N VR AR++GK+ R DL+ + L K I G
Sbjct: 144 NCSFQVFDKYPGIYLFLVHPNEMVRRWAILTARNLGKVDRDDYYDLQEVLTCLFKVIELG 203
Query: 255 FLET-EVLTSTFKTSRPRARLKRLPI-----------WLGITSLLEFLEPPALEEGIL-- 300
LE+ ++ TS+ + +L LP WLGI LL LE A++ +L
Sbjct: 204 LLESPDIYTSSV---LEKGKLILLPAHMYDTTNYKNYWLGICMLLTILEEQAMDSLLLGS 260
Query: 301 ERYPIFFDIVLNHISGDSPE-----FSHAVSCLRELFKMLGYKLW 340
++ F +L+ + S + F A+ C + LG K+W
Sbjct: 261 DKQNDFMQSILHTMEKQSDDDSMDPFWPALHCFMVILDRLGSKVW 305
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 61/303 (20%)
Query: 1333 VSPQKTP-----HDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARR-NLLERS 1386
+ P KTP +H++G VE + + ++FY++ ++ ++AR+ +LL R
Sbjct: 223 IPPSKTPITEQNRTLHLIGTVEHLDNGG------IKVKFYVK--GIKGDRARQVSLLLRY 274
Query: 1387 K--WHATLIMSITPQLREFHALSSLKSIPLLPIILNPVNVSRGYNESRELDLGKLSQLQQ 1444
+ W T + +++ REF AL + ++ R + + + L
Sbjct: 275 EIDWWTTKLCNLSTLQREFAALYQCSQSNFMKTLM-----MRDDDGEDGIVMKIPPLLHD 329
Query: 1445 ILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPK 1504
+++N+SQL A++ A+ + ++LIQGPPGTGKT I+ ++S LL + PK
Sbjct: 330 QFSSTYNDSQLNALTSAL-------EGNAITLIQGPPGTGKTHVILGLISVLLHSTIVPK 382
Query: 1505 ---------SHLKQNYSSCINSRPKIGQSAAIARAWQDAALAR------QINED-SERDK 1548
HL ++ + + + I++ W + I+ D ERD+
Sbjct: 383 VKSGGNNLGDHLLKDRELSMAEKRDLWN---ISQPWFNKEFPHIRDNYELIDYDFEERDQ 439
Query: 1549 KSSE--------------SSVRARVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLV 1594
K S + R+L+CA SN AVDE+VSR+ ++GL +DG+ Y P LV
Sbjct: 440 KRKRDLWRKLRDTGSVKGGSTKRRILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLV 499
Query: 1595 RVG 1597
RVG
Sbjct: 500 RVG 502
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 14/123 (11%)
Query: 1214 LDDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEFKA 1273
+D +YK IL D S +E E LK V V F + E +++ + PL+ EE +A
Sbjct: 41 IDRFYKHILTWD----ASDLSPKEKE------LKPVKVSFNNEEDYITTYEPLLFEECRA 90
Query: 1274 QLHSSFLEMSSWEDMYYGSLS-VLSVERVDDFHLVRFVHDDNDSVTSKIFSENDLVLLTR 1332
QL S +E +D +LS V + V+DF +V V +N ++ F +NDL++++
Sbjct: 91 QLERS-IEEGEKDDTSEPTLSRVRYISEVNDFLVVGLVMAENVNIFQ--FHDNDLIMISL 147
Query: 1333 VSP 1335
P
Sbjct: 148 HHP 150
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 134/567 (23%), Positives = 221/567 (38%), Gaps = 129/567 (22%)
Query: 1247 KEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHL 1306
+ VPV F + + ++F PL++ + +L + E+ Y + + + +
Sbjct: 1731 RPVPVRFHNYGDYFNVFFPLMVLNTFETVAQEWLNSPNRENFYQLQVRKFPADYIKYWEF 1790
Query: 1307 VRFVHDDNDSVTSKIF-SENDLVLLT--RVSPQKTP---------HDVH--MVGKVERRE 1352
++ + + +++ ENDLV L R++ +K H+ H V K R
Sbjct: 1791 AVYLEEC--ELAKQLYPKENDLVFLAPERINEEKKDTERNDIQDLHEYHSGYVHKFRRTS 1848
Query: 1353 RDNNRRSSILLIRFYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSI 1412
N ++ L +N LN+ + +I S+ R+ A+S L S
Sbjct: 1849 VMRNGKTECYLSIQTQENFPANLNEL---------VNCIVISSLVTTQRKLKAMSLLGSR 1899
Query: 1413 PLLP-IILNPVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKD 1471
L +LNP + +++L ++ L+ FNE Q +AI A +
Sbjct: 1900 NQLARAVLNPNPMDFC---TKDLLTTTSERIIAYLR-DFNEDQKKAIETAYAMVKHSPSV 1955
Query: 1472 CELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAW 1531
++ LI GPPGTGK++TIV ++ LL T K H +N S KI Q+
Sbjct: 1956 AKICLIHGPPGTGKSKTIVGLLYRLL-TENQRKGHSDEN------SNAKIKQN------- 2001
Query: 1532 QDAALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRI---------SKEGLY 1582
RVL+CA SNAAVDEL+ +I K+
Sbjct: 2002 --------------------------RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPL 2035
Query: 1583 GSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTLRS 1642
G+ G LVR+G K+++ L F +D+ V+HR+ K E + +
Sbjct: 2036 GNCGDI---NLVRLGPEKSINSEVLKFSLDSQVNHRM----------KKELPSHVQAMHK 2082
Query: 1643 NLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQ 1702
E L ++ +RA + G + LD+ + K V EL +K++
Sbjct: 2083 RKEFLDYQLDELSRQRALCRGGREIQRQELDENISK---VSKERQELASKIK-------- 2131
Query: 1703 IYRELGVAQVQEKKSYEETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFK 1762
E + K + I+ E+ I+ TLS GG L ES +
Sbjct: 2132 -----------------EVQGRPQKTQSIIILESHIICCTLSTSGGLLL----ESAFRGQ 2170
Query: 1763 FGNPSENTLFDAVVIDEAAQVVLVHEL 1789
G P F V++DEA Q + L
Sbjct: 2171 GGVP-----FSCVIVDEAGQSCEIETL 2192
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 136/317 (42%), Gaps = 67/317 (21%)
Query: 96 SGEMQ-------HCIQCVSQHHQAQEMYSMEYESGVIGPLLDVLRSLDEER-VTKYLREI 147
SGE Q +C++CV+++H+A++ +E VL L+ R + + + +
Sbjct: 27 SGEFQTADEDLCYCLECVAEYHKARDELPFLHE---------VLWELETLRLINHFEKSM 77
Query: 148 NARLAHQEYYPQIDNNQVICI---------------MYEVLMFPVLLDDQSLFTEFETFI 192
A + + +DNN + + + E+L +P LL + + E +
Sbjct: 78 KAEIGDDDELYIVDNNGEMPLFDITGQDFENKLRVPLLEILKYPYLLLHERV---NELCV 134
Query: 193 EAVDNMHELALDGHQLF---PGVFALFFF-NRRVRTIGRRLARSMGKLRRATDLEPMQPL 248
EA+ M E A Q+F PG++ N VR AR++GK+ R + + L
Sbjct: 135 EALCRM-EQANCSFQVFDKHPGIYLFLVHPNEMVRRWAILTARNLGKVDRDDYYDLQEVL 193
Query: 249 LKKF----IGFLET-EVLTSTFKTSRPRARLKRLP-----------IWLGITSLLEFLEP 292
L F +G LE+ ++ TS+ + +L LP WLGI LL LE
Sbjct: 194 LCLFKVIELGLLESPDIYTSSVLE---KGKLILLPSHMYDTTNYKSYWLGICMLLTILEE 250
Query: 293 PALEEGIL--ERYPIFFDIVLNHISGDSPE-----FSHAVSCLRELFKMLGYKLWLRSTL 345
A++ +L ++ F +L+ + ++ + F A+ C + LG K+W + +
Sbjct: 251 QAMDSLLLGSDKQNDFMQSILHTMEREADDDSVDPFWPALHCFMVILDRLGSKVWGQ-LM 309
Query: 346 SPSVMRNTLLGQCFHTR 362
P V T++ + R
Sbjct: 310 DPIVAFQTIINNASYNR 326
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 55/250 (22%)
Query: 1271 FKAQLHSSFLEMSSWED---MYYGSLSVLSVERVDDFHLVRFVHDDNDSVTSKI----FS 1323
+K Q + L++ W++ + YGSL +S + + F + +++ + I F+
Sbjct: 421 YKVQFDTKPLKLVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREHEDLCQGIVQLCFN 480
Query: 1324 ENDLVLLTRVSPQKTPHDVHMV-----------GKVERRERDNNRRSSILLIRFYLQNGS 1372
E LL V P + V G E +E D + +I+ Y++N
Sbjct: 481 EQSQQLLADVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVQCDSYVRNP- 539
Query: 1373 VRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSIPLLPIILNP-VNVSRGYNES 1431
R LL ++ T +M +R KS+ + +P +NV
Sbjct: 540 -------RYLLMGGRYDFTPLMENPSAMR--------KSLRGAEALRHPRINV------- 577
Query: 1432 RELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVA 1491
D G+ + + ++SQ++A+ A+ EL++IQGPPGTGKT +
Sbjct: 578 --FDFGQWPSKEAL---KLDDSQMEALQFALTK--------ELAIIQGPPGTGKTYVGLK 624
Query: 1492 IVSALLATRT 1501
IV ALL ++
Sbjct: 625 IVQALLTNKS 634
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=hcs1 PE=3 SV=1
Length = 660
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 1450 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1497
N SQ +A+ +I + ELSLI GPPGTGKT T+V I+ L+
Sbjct: 210 LNASQKKAVKFSIAVK-------ELSLIHGPPGTGKTHTLVEIIQQLV 250
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 86/227 (37%)
Query: 1558 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDH 1617
R+L+C SN AVD +V R+S G+ P +VR+G HP L + +++DH
Sbjct: 255 RILVCGASNLAVDNIVDRLSSSGI---------P-MVRLG-----HPARL---LPSILDH 296
Query: 1618 RLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVH 1677
L + +R+ + + + I +K TK+G
Sbjct: 297 SL------------DVLSRTGDNGDVIRGISEDIDVCLSKITKTKNG------------- 331
Query: 1678 KGDDVKLSDVELEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKSILKEAE 1737
++++IY+ + + +K Y + +A K +I+ ++
Sbjct: 332 --------------------RERREIYKNIR----ELRKDYRKYEA---KTVANIVSASK 364
Query: 1738 IVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1784
+V TL G G S + G + FDAV+IDEA+Q +
Sbjct: 365 VVFCTLHGAG-------SRQLKGQR---------FDAVIIDEASQAL 395
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1 SV=1
Length = 683
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Query: 1442 LQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1497
++ L + N+SQ AI+ AI + +L++I GPPGTGKT T++ ++ LL
Sbjct: 200 IKSFLNPNLNDSQKTAINFAI--------NNDLTIIHGPPGTGKTFTLIELIQQLL 247
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 49/108 (45%)
Query: 1474 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1533
LSLIQGPPGTGKT T ++V L ++
Sbjct: 409 LSLIQGPPGTGKTVTSASVVYHLATMQS-------------------------------- 436
Query: 1534 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1581
R +KS + VL+CA SN AVD+L +I + GL
Sbjct: 437 ------------RKRKS-----HSPVLVCAPSNVAVDQLAEKIHRTGL 467
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
Query: 1450 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRT 1501
++SQ++A+ A+ EL++IQGPPGTGKT + IV ALL +
Sbjct: 598 LDDSQMEALQFALTR--------ELAIIQGPPGTGKTYVGLKIVQALLTNES 641
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 24/117 (20%)
Query: 1448 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIV-----SALLATRTS 1502
T+ + SQ +A+S A+ EL++I GPPGTGKT T+V I+ L +
Sbjct: 189 TTLDLSQKEAVSFALAQK-------ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 241
Query: 1503 PKS----HLKQNYSSCINSRPKIGQSAAIARAWQ----DAALAR----QINEDSERD 1547
P + +L + + C ++G A + + Q DA LAR QI D RD
Sbjct: 242 PSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRRD 298
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1
Length = 988
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 24/117 (20%)
Query: 1448 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIV-----SALLATRTS 1502
T+ + SQ +A+S A+ E+++I GPPGTGKT T+V I+ L +
Sbjct: 189 TTLDPSQKEAVSFALAQK-------EVAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 241
Query: 1503 PKS----HLKQNYSSCINSRPKIGQSAAIARAWQ----DAALAR----QINEDSERD 1547
P + +L + + C ++G A + + Q DA LAR QI D RD
Sbjct: 242 PSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRRD 298
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 1449 SFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIV 1493
+ NESQ A+ A+ LS +L LI GPPGTGKTRTI ++
Sbjct: 184 NLNESQKLAVKKAV-LSR------DLYLIHGPPGTGKTRTITEVI 221
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 1448 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIV 1493
T+ + SQ +A+S A+ E+++I GPPGTGKT T+V I+
Sbjct: 189 TALDPSQKEAVSFALAQK-------EVAIIHGPPGTGKTTTVVEII 227
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 55/108 (50%)
Query: 1474 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1533
LSLIQGPPGTGKT T IV
Sbjct: 469 LSLIQGPPGTGKTVTSATIV---------------------------------------- 488
Query: 1534 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1581
L+RQ N VL+CA SN AVD+L +I K GL
Sbjct: 489 YHLSRQGN---------------GPVLVCAPSNIAVDQLTEKIDKTGL 521
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2
Length = 1124
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 55/108 (50%)
Query: 1474 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1533
LSLIQGPPGTGKT T IV
Sbjct: 493 LSLIQGPPGTGKTVTSATIV---------------------------------------- 512
Query: 1534 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1581
LARQ N VL+CA SN AVD+L +I + GL
Sbjct: 513 YHLARQGN---------------GPVLVCAPSNIAVDQLTEKIHQTGL 545
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2
Length = 1129
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 55/108 (50%)
Query: 1474 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1533
LSLIQGPPGTGKT T IV
Sbjct: 498 LSLIQGPPGTGKTVTSATIV---------------------------------------- 517
Query: 1534 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1581
LARQ N VL+CA SN AVD+L +I + GL
Sbjct: 518 YHLARQGN---------------GPVLVCAPSNIAVDQLTEKIHQTGL 550
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1
Length = 1002
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 1402 EFHALSSLKSIPLLPIILNPVNVSRGY---NESRELD----LGKLSQLQQILKT------ 1448
EFH + S+ + N +N R Y + + LD L ++++KT
Sbjct: 334 EFHQRHTAGSVYNVRFTYNRINTRRLYQAVDAAEMLDPNFLFPSLHSGKRMIKTKPFVPI 393
Query: 1449 --SFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPK 1504
+ N Q+ +I + +G K +I GPPGTGKT T+V + L T+ + +
Sbjct: 394 SPALNAEQICSIEMVLGC-----KGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNAR 446
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 1448 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIV 1493
T + SQ +A+ A+ S K EL++I GPPGTGKT T+V I+
Sbjct: 190 TCLDTSQKEAVLFAL----SQK---ELAIIHGPPGTGKTTTVVEII 228
>sp|Q04YY5|RUVB_LEPBL Holliday junction ATP-dependent DNA helicase RuvB OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550) GN=ruvB
PE=3 SV=1
Length = 341
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1455 LQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSC 1514
L ++V + + + K+ + LI GPPG GKT T+ IVS L TR +
Sbjct: 34 LNNLTVYVQAAKNRKRALDHVLISGPPGLGKT-TLAGIVSNELGTRLT------------ 80
Query: 1515 INSRPKIGQSAAIAR 1529
I S P I + A +AR
Sbjct: 81 ITSAPVITKGADLAR 95
>sp|Q04UI9|RUVB_LEPBJ Holliday junction ATP-dependent DNA helicase RuvB OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=ruvB PE=3 SV=1
Length = 341
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1455 LQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSC 1514
L ++V + + + K+ + LI GPPG GKT T+ IVS L TR +
Sbjct: 34 LNNLTVYVQAAKNRKRALDHVLISGPPGLGKT-TLAGIVSNELGTRLT------------ 80
Query: 1515 INSRPKIGQSAAIAR 1529
I S P I + A +AR
Sbjct: 81 ITSAPVITKGADLAR 95
>sp|Q10GP0|Y3198_ORYSJ Putative B3 domain-containing protein Os03g0619850 OS=Oryza sativa
subsp. japonica GN=Os03g0619850 PE=3 SV=1
Length = 253
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1041 ISDKRASQTESLK-NRVSILDSSKDLLDGSGPASPKQVLDESVGKSLNSLDSKVVDGKKK 1099
I D S+ SLK NR + D S++ D GPA P +L L+SL K++ K +
Sbjct: 115 ILDSDGSENVSLKSNRNGVSDESQESEDSEGPAGPPYILSWKSKSRLSSLQKKIIKEKVR 174
Query: 1100 ESNSKFNASDSLSFQNRVGLRNKPVE 1125
S+ ++ ++ +GL + P +
Sbjct: 175 SIQSEVPIYVAIMNKSNIGLTSSPCQ 200
>sp|Q8F7Y2|RUVB_LEPIN Holliday junction ATP-dependent DNA helicase RuvB OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=ruvB PE=3 SV=1
Length = 341
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1455 LQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSC 1514
L ++V + + + K+ + LI GPPG GKT T+ I+S L TR +
Sbjct: 34 LNNLTVYVQAAKNRKRALDHVLISGPPGLGKT-TLAGIISNELGTRLT------------ 80
Query: 1515 INSRPKIGQSAAIAR 1529
I S P I + A +AR
Sbjct: 81 ITSAPVITKGADLAR 95
>sp|P61534|RUVB_LEPIC Holliday junction ATP-dependent DNA helicase RuvB OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=ruvB PE=3 SV=1
Length = 341
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1455 LQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSC 1514
L ++V + + + K+ + LI GPPG GKT T+ I+S L TR +
Sbjct: 34 LNNLTVYVQAAKNRKRALDHVLISGPPGLGKT-TLAGIISNELGTRLT------------ 80
Query: 1515 INSRPKIGQSAAIAR 1529
I S P I + A +AR
Sbjct: 81 ITSAPVITKGADLAR 95
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 1450 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1497
N SQ+QA+ + LSLIQGPPGTGKT IV L+
Sbjct: 446 LNSSQMQAVKQVLTRP--------LSLIQGPPGTGKTVVSATIVYHLV 485
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 1450 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1497
N SQ+ A+ A+ LSLIQGPPGTGKT T IV L+
Sbjct: 452 LNRSQVYAVKHAL--------QRPLSLIQGPPGTGKTVTSATIVYQLV 491
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 37/108 (34%), Gaps = 55/108 (50%)
Query: 1474 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1533
+SLIQGPPGTGKT T AIV + K GQ +
Sbjct: 505 ISLIQGPPGTGKTVTSAAIVYHMA----------------------KQGQGQVL------ 536
Query: 1534 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1581
+CA SN AVD+L +IS GL
Sbjct: 537 ---------------------------VCAPSNVAVDQLAEKISATGL 557
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 17/23 (73%)
Query: 1474 LSLIQGPPGTGKTRTIVAIVSAL 1496
LSLIQGPPGTGKT T IV L
Sbjct: 425 LSLIQGPPGTGKTVTSATIVYHL 447
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 1450 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1497
NESQ+ A++ + LSLIQGPPGTGKT I+ L+
Sbjct: 537 LNESQISAVNKVL--------TAPLSLIQGPPGTGKTVISSFIIHHLV 576
>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2
Length = 1702
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 687 KCIL--EQVSNTRGLASGLKFLSSSTSSLSAIFLGLKHALKLVQ---LDSVLLKFQSLHH 741
KCI+ ++ R L+ L L S S +GL LK + ++++L +FQS
Sbjct: 490 KCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETILKRFQSKEL 549
Query: 742 FFFVLRKIFEEG-HLPKCDLLKSSSGHSSITMFSSQGGFLRQPQFE-SFDANTGCSSNID 799
V K+ EEG + C L+ ++T F G R PQ E +F ++G +D
Sbjct: 550 NLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLVDSGNEKEMD 609
Query: 800 L 800
L
Sbjct: 610 L 610
>sp|Q7MA56|RPOBC_WOLSU Bifunctional DNA-directed RNA polymerase subunit beta-beta'
OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 /
LMG 7466 / NCTC 11488 / FDC 602W) GN=rpoBC PE=3 SV=1
Length = 2883
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 1515 INSRPKIGQSAAIARAWQDAALARQINEDSERDKKSSESSVRARVLICAQSN--AAVDEL 1572
+ SR IGQ + L QINE E K ++RA+++ AQ + VDE
Sbjct: 1133 VPSRMNIGQILEVHLGLVGKKLGAQINEMFENQTKDWMGALRAKIIEIAQVSKMTGVDEF 1192
Query: 1573 VSRISKEGL 1581
VS +S E L
Sbjct: 1193 VSSLSDEAL 1201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 651,123,589
Number of Sequences: 539616
Number of extensions: 27493157
Number of successful extensions: 77984
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 77733
Number of HSP's gapped (non-prelim): 329
length of query: 1789
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1657
effective length of database: 120,340,147
effective search space: 199403623579
effective search space used: 199403623579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)