BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000251
(1784 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 105/468 (22%), Positives = 182/468 (38%), Gaps = 84/468 (17%)
Query: 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXX 320
Q ++ + GH ++V+ F G+ + + SDD+ VK+W+ L + GH +
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 106
Query: 321 XXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 380
D +++W +G + L GH+++V +AFSP ++ S+SDD T
Sbjct: 107 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA---SASDDKT 162
Query: 381 CRIWDARYSQ----------------FSP-RIYIPRPSD----AVAGRNMAPSSSAGPQS 419
++W+ R Q FSP I SD + RN + S
Sbjct: 163 VKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 221
Query: 420 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF- 478
+ AF+ +G + S D ++WN + + L+GH + VN V F
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLWN----------RNGQLLQTLTGHSSSVNGVAFR 271
Query: 479 -SGCAVASRFSLADSSKEDSTPKFKNS---------------W---FCHD--NIVTCSRD 517
G +A S+ +D T K N W F D I + S D
Sbjct: 272 PDGQTIA-------SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 518 GSAIIWIPRSRR----SHPKAARWTQAYH---LKVXXXXXXXXXXXXXXXXXILPTPRG- 569
+ +W + + ++ W A+ + +L T G
Sbjct: 325 KTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 384
Query: 570 ---VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAM 626
V + +S D + + +A D + +WN +G L+ +LTGH+ S + + P + IA
Sbjct: 385 SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIAS 443
Query: 627 SAGYDGKTIVWDIW--EGIPIRIYEISRFRLVDGKFSPDGASIILSDD 672
++ D KT+ +W G ++ + FSPDG +I + D
Sbjct: 444 AS--DDKTV--KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 487
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/419 (21%), Positives = 163/419 (38%), Gaps = 76/419 (18%)
Query: 265 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXX 324
R+ H ++V F G+ + + SDD+ VK+W+ L + GH +
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 325 XXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 384
D +++W +G + L GH+++V +AFSP ++ S+SDD T ++W
Sbjct: 70 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIA---SASDDKTVKLW 125
Query: 385 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR 444
+ RN + S ++ AF+ +G + S D +
Sbjct: 126 N---------------------RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164
Query: 445 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDSTPKFK 502
+WN + + L+GH + V V FS G +A S+ +D T K
Sbjct: 165 LWN----------RNGQLLQTLTGHSSSVWGVAFSPDGQTIA-------SASDDKTVKLW 207
Query: 503 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH---LKVXXXXXXXXXXXXXX 559
N R+G + ++ H + R A+ +
Sbjct: 208 N------------RNGQLL----QTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNR 250
Query: 560 XXXILPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 615
+L T G VN + + D + + +A D + +WN +G L+ +LTGH+ S + +
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 309
Query: 616 DVHPFNPRIAMSAGYDGKTIVWDIW--EGIPIRIYEISRFRLVDGKFSPDGASIILSDD 672
P IA ++ D KT+ +W G ++ + FSPDG +I + D
Sbjct: 310 AFSPDGQTIASAS--DDKTV--KLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASD 364
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/380 (20%), Positives = 144/380 (37%), Gaps = 98/380 (25%)
Query: 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXX 320
Q ++ + GH ++V+ F G+ + + SDD+ VK+W+ + L + GH +
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAF 352
Query: 321 XXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 380
D +++W +G + L GH+++V +AFSP ++ S+SDD T
Sbjct: 353 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIA---SASDDKT 408
Query: 381 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 440
++W+ RN + S ++ AF+ + + S D
Sbjct: 409 VKLWN---------------------RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447
Query: 441 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDST 498
++WN + + L+GH + V V FS G +A S+ +D T
Sbjct: 448 KTVKLWN----------RNGQLLQTLTGHSSSVRGVAFSPDGQTIA-------SASDDKT 490
Query: 499 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXX 558
K N R+G + ++ H + R
Sbjct: 491 VKLWN------------RNGQLL----QTLTGHSSSVR---------------------- 512
Query: 559 XXXXILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 618
+ +S D + + +A D + +WN +G L+ +LTGH+ S + +
Sbjct: 513 -------------GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS 558
Query: 619 PFNPRIAMSAGYDGKTIVWD 638
P IA SA D +W+
Sbjct: 559 PDGQTIA-SASSDKTVKLWN 577
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G+ + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 178
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D + +WN
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 67.8 bits (164), Expect = 6e-11, Method: Composition-based stats.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 27/213 (12%)
Query: 251 AKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG 310
+KP+ + + + GH AV F +G ++ + S D+L+KIW + G
Sbjct: 7 SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 311 HEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 370
H+ I+D D +++W + G + L+GH+ V F+P+ +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI- 125
Query: 371 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 430
+S S D + RIWD + +P SD V+ + FN +
Sbjct: 126 --VSGSFDESVRIWDVKTGMCLKT--LPAHSDPVSAVH------------------FNRD 163
Query: 431 GTVFVTGSSDTLARVWNA----CKPNTDDSDQP 459
G++ V+ S D L R+W+ C D D P
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 128
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G+ ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 60/273 (21%), Positives = 103/273 (37%), Gaps = 58/273 (21%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409
L GHT AV+++ FSP + L SSS D +IW A +F I +G +
Sbjct: 22 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTI---------SGHKL 69
Query: 410 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 469
S A++++ + V+ S D ++W+ + L GH
Sbjct: 70 GISD-----------VAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LKTLKGH 109
Query: 470 ENDV---NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIW 523
N V N+ S V+ F + + T + H + V+ +RDGS I+
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIV- 168
Query: 524 IPRSRRSHPKAAR-WTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFV 582
S+ R W A I V+ + +S + +++
Sbjct: 169 ----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 583 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 615
LAA +D + +W+ + G + + TGH Y +
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D +V IW+++T + +GH
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 38.5 bits (88), Expect = 0.034, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 263 MVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 313
Score = 30.8 bits (68), Expect = 7.3, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 253 KWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 68.9 bits (167), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G+ + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 178
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKN 238
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D + +WN
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 67.4 bits (163), Expect = 6e-11, Method: Composition-based stats.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 27/213 (12%)
Query: 251 AKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG 310
+KP+ + + + GH AV F +G ++ + S D+L+KIW + G
Sbjct: 7 SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 311 HEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 370
H+ I+D D +++W + G + L+GH+ V F+P+ +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI- 125
Query: 371 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 430
+S S D + RIWD + +P SD V+ + FN +
Sbjct: 126 --VSGSFDESVRIWDVKTGMCLKT--LPAHSDPVSAVH------------------FNRD 163
Query: 431 GTVFVTGSSDTLARVWNA----CKPNTDDSDQP 459
G++ V+ S D L R+W+ C D D P
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 128
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G+ ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D +V IW+++T + +GH
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 60/273 (21%), Positives = 103/273 (37%), Gaps = 58/273 (21%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409
L GHT AV+++ FSP + L SSS D +IW A +F I +G +
Sbjct: 22 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTI---------SGHKL 69
Query: 410 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 469
S A++++ + V+ S D ++W+ + L GH
Sbjct: 70 GISD-----------VAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LKTLKGH 109
Query: 470 ENDV---NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIW 523
N V N+ S V+ F + + T + H + V+ +RDGS I+
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIV- 168
Query: 524 IPRSRRSHPKAAR-WTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFV 582
S+ R W A I V+ + +S + +++
Sbjct: 169 ----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 583 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 615
LAA +D + +W+ + G + + TGH Y +
Sbjct: 211 LAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 37.4 bits (85), Expect = 0.072, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 263 MVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 313
Score = 30.8 bits (68), Expect = 7.6, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 253 KWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 178
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 140
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 141 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 180
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 181 TASGQCLKTLIDDDNP 196
Score = 47.4 bits (111), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 128
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 22 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 139 V---------KTGKCLKTLPAHSDPVSAVHFN 161
Score = 30.4 bits (67), Expect = 8.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 178
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 67.8 bits (164), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ S D+L+KIW + GH+ I+D
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 140
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 141 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 180
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 181 TASGQCLKTLIDDDNP 196
Score = 47.4 bits (111), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 128
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L +SS D +IW A +F I + SD +
Sbjct: 22 LAGHTKAVSSVKFSP---NGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 139 V---------KTGKCLKTLPAHSDPVSAVHFN 161
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 38.9 bits (89), Expect = 0.024, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 313
Score = 30.8 bits (68), Expect = 8.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 178
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 140
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 141 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 180
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 181 TASGQCLKTLIDDDNP 196
Score = 47.4 bits (111), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 128
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 22 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 139 V---------KTGKCLKTLPAHSDPVSAVHFN 161
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSP 364
++ +W L + L+GHT V + A P
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Score = 30.4 bits (67), Expect = 8.2, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 117
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 174
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 175 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 234
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 79
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 80 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 136
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 137 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 176
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 177 TASGQCLKTLIDDDNP 192
Score = 47.4 bits (111), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 66 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 124
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 125 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 18 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 74
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 135 V---------KTGKCLKTLPAHSDPVSAVHFN 157
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 222 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
Score = 38.9 bits (89), Expect = 0.026, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 199 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 259 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 309
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 249 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 304
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 114
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 171
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 172 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 231
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 76
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 77 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 133
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 134 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 173
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 174 TASGQCLKTLIDDDNP 189
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 63 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 121
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 122 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 15 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 71
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 132 V---------KTGKCLKTLPAHSDPVSAVHFN 154
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 219 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 256 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 306
Score = 30.4 bits (67), Expect = 8.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 246 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 301
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 123
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 180
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 181 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 240
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 85
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 86 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 142
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 143 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 182
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 183 TASGQCLKTLIDDDNP 198
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 72 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 130
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 131 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Score = 43.9 bits (102), Expect = 9e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 24 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 80
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 141 V---------KTGKCLKTLPAHSDPVSAVHFN 163
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 228 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 265 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 315
Score = 30.4 bits (67), Expect = 8.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 255 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 310
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 175
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 137
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 138 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 177
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 178 TASGQCLKTLIDDDNP 193
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 125
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Score = 43.9 bits (102), Expect = 9e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 19 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 136 V---------KTGKCLKTLPAHSDPVSAVHFN 158
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 38.9 bits (89), Expect = 0.028, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 310
Score = 30.4 bits (67), Expect = 8.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 175
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 137
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 138 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 177
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 178 TASGQCLKTLIDDDNP 193
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 125
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 19 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 136 V---------KTGKCLKTLPAHSDPVSAVHFN 158
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 38.9 bits (89), Expect = 0.028, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 310
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 181
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 143
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 144 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 183
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 184 TASGQCLKTLIDDDNP 199
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 131
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 25 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 142 V---------KTGKCLKTLPAHSDPVSAVHFN 164
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 38.9 bits (89), Expect = 0.029, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 316
Score = 30.4 bits (67), Expect = 8.7, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 181
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 143
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 144 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 183
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 184 TASGQCLKTLIDDDNP 199
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 131
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 25 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 142 V---------KTGKCLKTLPAHSDPVSAVHFN 164
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 38.9 bits (89), Expect = 0.029, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 316
Score = 30.4 bits (67), Expect = 8.7, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 135
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 192
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 193 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 252
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 253 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Score = 68.2 bits (165), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 98 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 154
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 155 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 194
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 195 TASGQCLKTLIDDDNP 210
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 84 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 142
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 143 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 61/273 (22%), Positives = 104/273 (38%), Gaps = 58/273 (21%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409
L GHT AV+++ FSP + L SSS D +IW A +F I +G +
Sbjct: 36 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTI---------SGHKL 83
Query: 410 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 469
S A++++ + V+ S D ++W+ + L GH
Sbjct: 84 GISD-----------VAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LKTLKGH 123
Query: 470 ENDV---NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIW 523
N V N+ S V+ F + + T K + H + V+ +RDGS I+
Sbjct: 124 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV- 182
Query: 524 IPRSRRSHPKAAR-WTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFV 582
S+ R W A I V+ + +S + +++
Sbjct: 183 ----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKFSPNGKYI 224
Query: 583 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 615
LAA +D + +W+ + G + + TGH Y +
Sbjct: 225 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 240 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Score = 38.9 bits (89), Expect = 0.029, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 217 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 277 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 327
Score = 30.4 bits (67), Expect = 8.8, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 267 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 322
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 181
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 67.8 bits (164), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 143
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 144 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 183
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 184 TASGQCLKTLIDDDNP 199
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 131
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 25 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 142 V---------KTGKCLKTLPAHSDPVSAVHFN 164
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 38.5 bits (88), Expect = 0.030, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 316
Score = 30.4 bits (67), Expect = 9.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 68.2 bits (165), Expect = 5e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 119
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 176
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 177 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 236
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Score = 67.8 bits (164), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 81
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 82 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 138
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 139 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 178
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 179 TASGQCLKTLIDDDNP 194
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 68 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 126
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 127 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 20 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 76
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 137 V---------KTGKCLKTLPAHSDPVSAVHFN 159
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 224 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Score = 38.5 bits (88), Expect = 0.030, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 261 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 311
Score = 30.4 bits (67), Expect = 9.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 580 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
+++++ D + +WN +V L GHT+ HP IA +A + KTI
Sbjct: 251 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 306
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 67.4 bits (163), Expect = 6e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 197
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 198 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 258 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Score = 67.4 bits (163), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 103 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 159
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 160 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 199
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 200 TASGQCLKTLIDDDNP 215
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 147
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 41 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 97
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 158 V---------KTGKCLKTLPAHSDPVSAVHFN 180
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 245 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 300
Score = 38.5 bits (88), Expect = 0.035, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 282 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 332
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 67.4 bits (163), Expect = 7e-11, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH+ + + +++ SDD+ +KIW + + CL + +GH +
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 142
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +R+W + G + L H+ V+A+ F+ R GS+ ++SSS DG CRI
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSL--IVSSSYDGLCRI 199
Query: 384 WDARYSQ-----------------FSPR-IYIPRPS--------DAVAGRNMAPSSSAGP 417
WD Q FSP YI + D G+ + +
Sbjct: 200 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 259
Query: 418 QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ + IF G V+GS D L +WN
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Score = 67.4 bits (163), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 27/196 (13%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH AV F +G ++ + S D+L+KIW + GH+ I+D
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 104
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D +++W + G + L+GH+ V F+P+ + +S S D + RIWD +
Sbjct: 105 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWDVK 161
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +P SD V+ + FN +G++ V+ S D L R+W+
Sbjct: 162 TGKCLKT--LPAHSDPVSAVH------------------FNRDGSLIVSSSYDGLCRIWD 201
Query: 448 A----CKPNTDDSDQP 459
C D D P
Sbjct: 202 TASGQCLKTLIDDDNP 217
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G++ + WS D+ +++A D + +W+ + G + +L GH+ + + +P + +S
Sbjct: 91 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG 149
Query: 629 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 688
+D +WD+ G ++ + F+ DG+ I+ S G I +T G+ K
Sbjct: 150 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 34/152 (22%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR--PSDAV--A 405
L GHT AV+++ FSP + L SSS D +IW A +F I + SD +
Sbjct: 43 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 99
Query: 406 GRNMAPSSSAGP------------------QSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
N+ S+S S+ +FCC FN + V+GS D R+W+
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 448 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ + L H + V+ V F+
Sbjct: 160 V---------KTGKCLKTLPAHSDPVSAVHFN 182
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRS---GRYVITGSDDRLVKIWSMETAYCLASCRGH 311
K + +K GH+N YC + S G+++++GS+D LV IW+++T + +GH
Sbjct: 247 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 302
Score = 38.5 bits (88), Expect = 0.036, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD---ITDXXXXXXXXXXXXXXXDC 334
F +G+Y++ + D +K+W CL + GH+ + I D
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Query: 335 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
++ +W L + L+GHT V + A P ++ + +D T ++W +
Sbjct: 284 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKS 334
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 78/193 (40%), Gaps = 32/193 (16%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 316
++ Q + + GH AV C +D GR V++G+ D +VK+W ET CL + +GH +
Sbjct: 226 IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV- 282
Query: 317 DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 376
D IRVW + G I L GH + + + L+S +
Sbjct: 283 -YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI-----LVSGN 336
Query: 377 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVF 434
D T +IWD + Q + GP HQ + C FN N
Sbjct: 337 ADSTVKIWDIKTGQ-------------------CLQTLQGPNKHQSAVTCLQFNKN--FV 375
Query: 435 VTGSSDTLARVWN 447
+T S D ++W+
Sbjct: 376 ITSSDDGTVKLWD 388
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 41/228 (17%)
Query: 259 KMQNIKRVRGHRN-AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD 317
++++ K ++GH + + C F G +++GSDD +K+WS T CL + GH G +
Sbjct: 107 ELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV-- 162
Query: 318 XXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 377
D ++VW G I L GHT+ V + + +++S S
Sbjct: 163 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-----RVVSGSR 217
Query: 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 437
D T R+WD Q + G A + C + +G V+G
Sbjct: 218 DATLRVWDIETGQ---------CLHVLMGHVAA-----------VRCVQY--DGRRVVSG 255
Query: 438 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 485
+ D + +VW+ P T+ + L GH N V +QF G V S
Sbjct: 256 AYDFMVKVWD---PETETC------LHTLQGHTNRVYSLQFDGIHVVS 294
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXX 325
++GH N VY FD G +V++GS D +++W +ET C+ + GH+
Sbjct: 275 LQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELKDN 330
Query: 326 XXXXXXXDCIIRVWRLPDGLPISVLRG---HTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382
D +++W + G + L+G H +AVT + F+ +++SSDDGT +
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF-----VITSSDDGTVK 385
Query: 383 IWDARYSQF 391
+WD + +F
Sbjct: 386 LWDLKTGEF 394
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 92/265 (34%), Gaps = 49/265 (18%)
Query: 406 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 465
G +P G H I C F N V+GS D +VW+A +
Sbjct: 106 GELKSPKVLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKC---------LRT 154
Query: 466 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN--------SWFCHDNIVTC--- 514
L GH V Q R ++ S D T K N + + H + V C
Sbjct: 155 LVGHTGGVWSSQM-------RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 515 --------SRDGSAIIWIPRSRRS------HPKAARWTQAYHLKVXXXXXXXXXXXXX-X 559
SRD + +W + + H A R Q +V
Sbjct: 208 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 267
Query: 560 XXXILPTPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 617
L T +G V+SL D V++ +D I VW+ G+ +H+LTGH T ++
Sbjct: 268 TETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME- 326
Query: 618 HPFNPRIAMSAGYDGKTIVWDIWEG 642
I +S D +WDI G
Sbjct: 327 --LKDNILVSGNADSTVKIWDIKTG 349
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 574 VWS--LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 631
VWS + + +++ D + VWNA G +H+L GHT + + +H + +S D
Sbjct: 162 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRD 218
Query: 632 GKTIVWDIWEG--IPIRIYEISRFRLV--DGKFSPDGA 665
VWDI G + + + ++ R V DG+ GA
Sbjct: 219 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 256
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 23/187 (12%)
Query: 278 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIR 337
F G+++ TG++DRL++IW +E + +GHE DI D +R
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 338 VWRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 394
+W L G L +S+ G VT +A SP G + + S D R+WD+ R
Sbjct: 191 IWDLRTGQCSLTLSIEDG----VTTVAVSPGDGK--YIAAGSLDRAVRVWDSETGFLVER 244
Query: 395 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNT- 453
+ + + S ++ F +G V+GS D ++WN N
Sbjct: 245 L-------------DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291
Query: 454 DDSDQPN 460
DS PN
Sbjct: 292 SDSKTPN 298
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA------------YCLASCRGHEGDI 315
GH+++VY +F R G+ V++GS DR VK+W+++ A C + GH+ +
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 316 TDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS--PRPGSVYQLL 373
D + W G P+ +L+GH +V ++A + G Y +
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
Query: 374 SS-SDDGTCRIWDARYSQFSP 393
++ S D RIW +Y + +P
Sbjct: 374 ATGSGDCKARIW--KYKKIAP 392
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 316
++ + + ++GH +Y + SG +++GS DR V+IW + T C + +G T
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 211
Query: 317 DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVL-------RGHTAAVTAIAFSPRPGSV 369
D +RVW G + L GH +V ++ F+ SV
Sbjct: 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 271
Query: 370 YQLLSSSDDGTCRIWD 385
+S S D + ++W+
Sbjct: 272 ---VSGSLDRSVKLWN 284
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 570 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 629
+ + +S D +F+ D I +W+ + +V L GH + Y LD P ++ +G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 630 YDGKTIVWDIWEG 642
D +WD+ G
Sbjct: 186 -DRTVRIWDLRTG 197
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 108/300 (36%), Gaps = 90/300 (30%)
Query: 353 HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG----RN 408
HT+ V + FS + L++ + T +++ + S + R SD A N
Sbjct: 63 HTSVVCCVKFSNDG----EYLATGCNKTTQVY-----RVSDGSLVARLSDDSAANKDPEN 113
Query: 409 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID-VLS 467
+ SSS + C F+ +G TG+ D L R+W D N +I +L
Sbjct: 114 LNTSSSPSSDLYIRSVC-FSPDGKFLATGAEDRLIRIW----------DIENRKIVMILQ 162
Query: 468 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 527
GHE D+ +SL D P D +V+ S D + IW R+
Sbjct: 163 GHEQDI-------------YSL------DYFPS-------GDKLVSGSGDRTVRIWDLRT 196
Query: 528 RRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSL-DNRFVLAAI 586
+ L GV + S D +++ A
Sbjct: 197 GQC------------------------------SLTLSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 587 MDCRICVWNAADGSLVHSL-------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639
+D + VW++ G LV L TGH +S Y + V + + +S D +W++
Sbjct: 227 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV-VFTRDGQSVVSGSLDRSVKLWNL 285
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 12/184 (6%)
Query: 267 RGHRNAVYCAIFDRSGR--YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXX 324
GHR+ V C F + +++ S D+ VK+W++ ++ GH G ++
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 325 XXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 384
D ++ +W L +G + L ++ + A+ FSP Y L ++++ G +IW
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNR---YWLCAATEHG-IKIW 628
Query: 385 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN--ANGTVFVTGSSDTL 442
D + + ++A N P+++ + I+C + N A+G+ +G +D +
Sbjct: 629 DLESKSIVEDLKVDLKAEAEKADNSGPAAT---KRKVIYCTSLNWSADGSTLFSGYTDGV 685
Query: 443 ARVW 446
RVW
Sbjct: 686 IRVW 689
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/209 (18%), Positives = 77/209 (36%), Gaps = 30/209 (14%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
+R+ GH + V + G++ ++GS D +++W + GH D+
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVL---RGHTAAVTAIAFSP---RPGSVYQLLSSSD 377
D I++W ++ GH V+ + FSP +P ++S+S
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP----TIVSASW 539
Query: 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 437
D T ++W+ N S+ + + A + +G++ +G
Sbjct: 540 DKTVKVWNL--------------------SNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 438 SSDTLARVWNACKPNTDDSDQPNHEIDVL 466
D + +W+ + S + N I L
Sbjct: 580 GKDGVVLLWDLAEGKKLYSLEANSVIHAL 608
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 582 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 641
+++A D + VWN ++ L +L GHT + V P + + S G DG ++WD+ E
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE 592
Query: 642 G 642
G
Sbjct: 593 G 593
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 570 VNMIVWSLDNR-FVLAAIMDCRICVW-----NAADGSLVHSLTGHTESTYVLDV-HPFNP 622
V I +DN +++A D I +W + A G LTGH S +V DV +
Sbjct: 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH--SHFVEDVVLSSDG 442
Query: 623 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASII 668
+ A+S +DG+ +WD+ G+ R + ++ FS D I+
Sbjct: 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV 488
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 82/218 (37%), Gaps = 25/218 (11%)
Query: 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI--TDXXXXXX 323
++ H + V C F Y+ T S D+ VKIW T + + H +
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D +++W L + + GHT +V FSP L S S DGT R+
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE---LLASCSADGTLRL 769
Query: 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF--CCAFNANGTVFVTGSSDT 441
WD R + I + R SS P+ ++ CC+++A+G + + +
Sbjct: 770 WDVRSANERKSINVKR---------FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK 820
Query: 442 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ D ++ +GH + + Y FS
Sbjct: 821 VLLF---------DIHTSGLLAEIHTGHHSTIQYCDFS 849
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 104/470 (22%), Positives = 169/470 (35%), Gaps = 84/470 (17%)
Query: 273 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDXXXXXXXXXXXXXX 331
V C + G +I + ++ V ++ + T+ LA GH I
Sbjct: 801 VKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859
Query: 332 XDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 391
+ +W + L ++ RGH + V + FSP S L++SDD T R+W+ +
Sbjct: 860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS---FLTASDDQTIRVWETKKVCK 916
Query: 392 SPRIYIPRPSDAVAGRN----MAPSSSAGPQ-------------SHQIFCCAFNANGTVF 434
+ I + + D V N +A + G Q Q+ CC + +
Sbjct: 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976
Query: 435 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 494
G D ++ PN N GH+ V ++QF+ A +L SS
Sbjct: 977 AFGDEDGAIKIIEL--PN-------NRVFSSGVGHKKAVRHIQFT----ADGKTLI-SSS 1022
Query: 495 EDSTPKFKNSWFCHD--------------------NIVTCSRDGSAIIW------IPRSR 528
EDS + N W D +++ S DG+ +W I R
Sbjct: 1023 EDSVIQVWN-WQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1081
Query: 529 RSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTP----RGVNMIV----WSLDNR 580
H + + A L +P +G N V +SLD
Sbjct: 1082 TCH-QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140
Query: 581 FVLAAIMDCRICVWNAADGSLVHSLT-------GHTESTYVLDVHPFNP--RIAMSAGYD 631
+ + I +WN +DG L+HS T +V DV F+P + +SAG
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV-CFSPDSKTLVSAG-- 1197
Query: 632 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681
G W++ G + + + L SPD + + D++G LYIL
Sbjct: 1198 GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 27/182 (14%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-YCLASCRGHEGDITDXXXXXXXXX 326
GH+ AV F G+ +I+ S+D ++++W+ +T Y + H+ + D
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL--QAHQETVKD-FRLLQDSR 1057
Query: 327 XXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
D ++VW + G H V + A S + S+S D T +IW
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS---SDATKFSSTSADKTAKIWS- 1113
Query: 387 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
+ P + G N + C AF+ +G + TG + R+W
Sbjct: 1114 --------FDLLSPLHELKGHNGC-----------VRCSAFSLDGILLATGDDNGEIRIW 1154
Query: 447 NA 448
N
Sbjct: 1155 NV 1156
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 82/435 (18%), Positives = 143/435 (32%), Gaps = 153/435 (35%)
Query: 258 QKMQNIKR--VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 315
+ ++N+ R VR H +AVY A F + G+ + + D+ ++++ ET
Sbjct: 601 KTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET-------------- 646
Query: 316 TDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 375
G + ++ H V AFS + +
Sbjct: 647 ----------------------------GEKLLDIKAHEDEVLCCAFSSDDSYIA---TC 675
Query: 376 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN--ANGTV 433
S D +IWD+ + + S Q+ CC F +N +
Sbjct: 676 SADKKVKIWDSATGKLV--------------------HTYDEHSEQVNCCHFTNKSNHLL 715
Query: 434 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 493
TGS+D ++W+ + ++ + GH N VN+ +FS
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNT---------MFGHTNSVNHCRFS-------------- 752
Query: 494 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS--RRSHPKAARWTQAYHLKVXXXXXX 551
+D + +CS DG+ +W RS R R+ +
Sbjct: 753 PDDEL------------LASCSADGTLRLWDVRSANERKSINVKRFFLSSE--------- 791
Query: 552 XXXXXXXXXXXILPTPRGVNMIV----WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG 607
P V +IV WS D ++ A + + G L TG
Sbjct: 792 -------------DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 838
Query: 608 HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGK-------- 659
H + D P++ +A+ A +W+I SR ++ D +
Sbjct: 839 HHSTIQYCDFSPYD-HLAVIALSQYCVELWNI----------DSRLKVADCRGHLSWVHG 887
Query: 660 --FSPDGASIILSDD 672
FSPDG+S + + D
Sbjct: 888 VMFSPDGSSFLTASD 902
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC 308
+ ++GH V C+ F G + TG D+ ++IW++ L SC
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 27/219 (12%)
Query: 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI--TDXXXXXX 323
++ H + V C F Y+ T S D+ VKIW T + + H +
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS-SDDGTCR 382
D +++W L + + GHT +V FSP +LL+S S DGT R
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD----ELLASCSADGTLR 775
Query: 383 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF--CCAFNANGTVFVTGSSD 440
+WD R + I + R SS P+ ++ CC+++A+G + + +
Sbjct: 776 LWDVRSANERKSINVKR---------FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 826
Query: 441 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
+ D ++ +GH + + Y FS
Sbjct: 827 KVLLF---------DIHTSGLLAEIHTGHHSTIQYCDFS 856
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 104/470 (22%), Positives = 169/470 (35%), Gaps = 84/470 (17%)
Query: 273 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDXXXXXXXXXXXXXX 331
V C + G +I + ++ V ++ + T+ LA GH I
Sbjct: 808 VKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 866
Query: 332 XDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 391
+ +W + L ++ RGH + V + FSP S L++SDD T R+W+ +
Sbjct: 867 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS---FLTASDDQTIRVWETKKVCK 923
Query: 392 SPRIYIPRPSDAVAGRN----MAPSSSAGPQ-------------SHQIFCCAFNANGTVF 434
+ I + + D V N +A + G Q Q+ CC + +
Sbjct: 924 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 983
Query: 435 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 494
G D ++ PN N GH+ V ++QF+ A +L SS
Sbjct: 984 AFGDEDGAIKIIEL--PN-------NRVFSSGVGHKKAVRHIQFT----ADGKTLI-SSS 1029
Query: 495 EDSTPKFKNSWFCHDNI--------------------VTCSRDGSAIIW------IPRSR 528
EDS + N W D + ++ S DG+ +W I R
Sbjct: 1030 EDSVIQVWN-WQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1088
Query: 529 RSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTP----RGVNMIV----WSLDNR 580
H + + A L +P +G N V +SLD
Sbjct: 1089 TCH-QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1147
Query: 581 FVLAAIMDCRICVWNAADGSLVHSLT-------GHTESTYVLDVHPFNP--RIAMSAGYD 631
+ + I +WN +DG L+HS T +V DV F+P + +SAG
Sbjct: 1148 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV-CFSPDSKTLVSAG-- 1204
Query: 632 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681
G W++ G + + + L SPD + + D++G LYIL
Sbjct: 1205 GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1254
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 27/182 (14%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-YCLASCRGHEGDITDXXXXXXXXX 326
GH+ AV F G+ +I+ S+D ++++W+ +T Y + H+ + D
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL--QAHQETVKD-FRLLQDSR 1064
Query: 327 XXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
D ++VW + G H V + A S + S+S D T +IW
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS---SDATKFSSTSADKTAKIWS- 1120
Query: 387 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
+ P + G N + C AF+ +G + TG + R+W
Sbjct: 1121 --------FDLLSPLHELKGHNGC-----------VRCSAFSLDGILLATGDDNGEIRIW 1161
Query: 447 NA 448
N
Sbjct: 1162 NV 1163
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 82/435 (18%), Positives = 143/435 (32%), Gaps = 153/435 (35%)
Query: 258 QKMQNIKR--VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 315
+ ++N+ R VR H +AVY A F + G+ + + D+ ++++ ET
Sbjct: 608 KTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET-------------- 653
Query: 316 TDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 375
G + ++ H V AFS + +
Sbjct: 654 ----------------------------GEKLLDIKAHEDEVLCCAFSSDDSYIA---TC 682
Query: 376 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN--ANGTV 433
S D +IWD+ + + S Q+ CC F +N +
Sbjct: 683 SADKKVKIWDSATGKLV--------------------HTYDEHSEQVNCCHFTNKSNHLL 722
Query: 434 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 493
TGS+D ++W+ + ++ + GH N VN+ +FS
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNT---------MFGHTNSVNHCRFS-------------- 759
Query: 494 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS--RRSHPKAARWTQAYHLKVXXXXXX 551
+D + +CS DG+ +W RS R R+ +
Sbjct: 760 PDDEL------------LASCSADGTLRLWDVRSANERKSINVKRFFLSSE--------- 798
Query: 552 XXXXXXXXXXXILPTPRGVNMIV----WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG 607
P V +IV WS D ++ A + + G L TG
Sbjct: 799 -------------DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 845
Query: 608 HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGK-------- 659
H + D P++ +A+ A +W+I SR ++ D +
Sbjct: 846 HHSTIQYCDFSPYD-HLAVIALSQYCVELWNI----------DSRLKVADCRGHLSWVHG 894
Query: 660 --FSPDGASIILSDD 672
FSPDG+S + + D
Sbjct: 895 VMFSPDGSSFLTASD 909
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC 308
+ ++GH V C+ F G + TG D+ ++IW++ L SC
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXX 325
+RGH +V G V++GS D + +W + CL GH I
Sbjct: 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323
Query: 326 XXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
D IR+W L +G + L+GHTA V + S + L+S++ DG+ R WD
Sbjct: 324 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF-----LVSAAADGSIRGWD 378
Query: 386 A 386
A
Sbjct: 379 A 379
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 80/217 (36%), Gaps = 29/217 (13%)
Query: 266 VRGHRNAVY-CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXX 324
+RGH +V C F+ + YVITG+DD++++++ L GH+G +
Sbjct: 117 LRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHG 173
Query: 325 XXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 384
D +RVW + G V GH + V + Y +++ S D T +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHVW 232
Query: 385 DARYSQFSPR--------IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 436
P + P + P + H + +G + V+
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEE-------NPYFVGVLRGHMASVRTVSGHGNIVVS 285
Query: 437 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV 473
GS D VW+ + + +LSGH + +
Sbjct: 286 GSYDNTLIVWDVAQMKC---------LYILSGHTDRI 313
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGH 311
V +M+ + + GH + +Y I+D + I+ S D ++IW +E + + +GH
Sbjct: 297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 583 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638
++A MD I +W+ +G L+++L GHT +L + + + +SA DG WD
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWD 378
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 63/315 (20%), Positives = 119/315 (37%), Gaps = 80/315 (25%)
Query: 335 IIRVWRLPDGLPI-SVLRGH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 392
I++ W P +P + LRGH T+ +T + F +++ +DD R++D+ +F
Sbjct: 101 ILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDN-----YVITGADDKMIRVYDSINKKFL 155
Query: 393 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 452
++ +G + ++ + A+G + V+GS+D RVW+ K
Sbjct: 156 LQL---------SGHDGG-----------VWALKY-AHGGILVSGSTDRTVRVWDIKKGC 194
Query: 453 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 512
V GH + V + ++KN + IV
Sbjct: 195 CTH---------VFEGHNSTVRCLDI--------------------VEYKNIKY----IV 221
Query: 513 TCSRDGSAIIW-IPR--SRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRG 569
T SRD + +W +P+ S H + + +H + RG
Sbjct: 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH-------------TPEENPYFVGVLRG 268
Query: 570 VNMIVWSLDNR--FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 627
V ++ V++ D + VW+ A ++ L+GHT+ Y ++ + +S
Sbjct: 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS-TIYDHERKRCIS 327
Query: 628 AGYDGKTIVWDIWEG 642
A D +WD+ G
Sbjct: 328 ASMDTTIRIWDLENG 342
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 26/231 (11%)
Query: 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSM--ETAY-CLASCRGHEGDIT 316
+ + + GH N V + SG + T S D+ V +W + E Y C++ H D+
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 317 DXXXXXXXXXXXXXXXDCIIRVWRLP--DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 374
D ++++R D + + L GH + V ++AF P S +L S
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP---SGQRLAS 211
Query: 375 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS-----SSAGPQSHQIFCCAFNA 429
SDD T RIW R Y+P VA PS + +G S I+ A+
Sbjct: 212 CSDDRTVRIW---------RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262
Query: 430 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID--VLSGHENDVNYVQF 478
T D RV+ PN+ D QP + + H DVN V +
Sbjct: 263 LTGALATACGDDAIRVFQE-DPNS-DPQQPTFSLTAHLHQAHSQDVNCVAW 311
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 29/145 (20%)
Query: 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIW---------------SMETAYCLASCRG 310
+ GH + V+ FD SG+ + + SDDR V+IW S + C+ + G
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 311 -HEGDITDXXXXXXXXXXXXXXXDCIIRVWRL-PD--------GLPISVLRGHTAAVTAI 360
H I D D IRV++ P+ L + + H+ V +
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 361 AFSPR-PGSVYQLLSSSDDGTCRIW 384
A++P+ PG L S SDDG W
Sbjct: 310 AWNPKEPG---LLASCSDDGEVAFW 331
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 95/255 (37%), Gaps = 29/255 (11%)
Query: 238 HRAPSIRAACYAIAKPSTMVQKMQNIK-----------RVRGHRNAVYCAIFDRSGRYVI 286
HR+P R + + + IK ++GH ++V FD SG+ +
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 287 TGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLP 346
+ S D +K+W + C+ + GH+ +++ D I++W + G
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 347 ISVLRGHTAAVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARYSQFSPRIYIPRPSDAVA 405
+ GH V + RP L++S S+D T R+W + + R V
Sbjct: 227 VKTFTGHREWVRMV----RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR--HVVE 280
Query: 406 GRNMAPSSSAGPQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 463
+ AP SS S + G ++GS D ++W+ +
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC---------L 331
Query: 464 DVLSGHENDVNYVQF 478
L GH+N V V F
Sbjct: 332 MTLVGHDNWVRGVLF 346
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 79/208 (37%), Gaps = 38/208 (18%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GHR+ V IF +++ S+D +K+W ET + +GH + D
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 328 XXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D I++W I + GH V++++ P ++S+S D T ++W+ +
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIKMWEVQ 222
Query: 388 -------YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 440
++ + + RP N +GT+ + S+D
Sbjct: 223 TGYCVKTFTGHREWVRMVRP---------------------------NQDGTLIASCSND 255
Query: 441 TLARVW-NACKPNTDDSDQPNHEIDVLS 467
RVW A K + + H ++ +S
Sbjct: 256 QTVRVWVVATKECKAELREHRHVVECIS 283
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 73/210 (34%), Gaps = 43/210 (20%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE---- 312
VQ +K GHR V ++ G + + S+D+ V++W + T C A R H
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 313 ----------GDITDXXXXXXXXX------XXXXXXDCIIRVWRLPDGLPISVLRGHTAA 356
I++ D I++W + G+ + L GH
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 357 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 416
V + F G + +LS +DD T R+WD +N +
Sbjct: 341 VRGVLF--HSGGKF-ILSCADDKTLRVWDY--------------------KNKRCMKTLN 377
Query: 417 PQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
H + F+ VTGS D +VW
Sbjct: 378 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
+ + GH + C F + ++T S D +W +ET + GH GD+
Sbjct: 148 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 206
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D ++W + +G+ GH + + AI F P + + SDD TCR+
Sbjct: 207 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRL 263
Query: 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 443
+D R Q + + + G I +F+ +G + + G D
Sbjct: 264 FDLRADQ---ELMTYSHDNIICG---------------ITSVSFSKSGRLLLAGYDDFNC 305
Query: 444 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 485
VW+A K + VL+GH+N V+ + + G AVA+
Sbjct: 306 NVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVAT 340
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 283 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVW--R 340
R ++G+ D K+W + C + GHE DI D R++ R
Sbjct: 208 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267
Query: 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 400
L +T+++FS + G + LL+ DD C +WDA +
Sbjct: 268 ADQELMTYSHDNIICGITSVSFS-KSGRL--LLAGYDDFNCNVWDALKAD---------R 315
Query: 401 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +AG + +++ C +G TGS D+ ++WN
Sbjct: 316 AGVLAGHD-----------NRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 604 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 663
+L GH Y + + R+ +SA DGK I+WD + + + ++ ++P
Sbjct: 61 TLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 664 GASIILS--DDVGQLYILNTGQG 684
G + D++ +Y L T +G
Sbjct: 120 GNYVACGGLDNICSIYNLKTREG 142
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
+ + GH + C F + ++T S D +W +ET + GH GD+
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D ++W + +G+ GH + + AI F P + + SDD TCR+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRL 252
Query: 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 443
+D R Q + + + G I +F+ +G + + G D
Sbjct: 253 FDLRADQ---ELMTYSHDNIICG---------------ITSVSFSKSGRLLLAGYDDFNC 294
Query: 444 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 485
VW+A K + VL+GH+N V+ + + G AVA+
Sbjct: 295 NVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 283 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVW--R 340
R ++G+ D K+W + C + GHE DI D R++ R
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 400
L +T+++FS + G + LL+ DD C +WDA +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFS-KSGRL--LLAGYDDFNCNVWDALKAD---------R 304
Query: 401 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +AG + +++ C +G TGS D+ ++WN
Sbjct: 305 AGVLAGHD-----------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 604 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 663
+L GH Y + + R+ +SA DGK I+WD + + + ++ ++P
Sbjct: 50 TLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 664 GASIILS--DDVGQLYILNTGQG 684
G + D++ +Y L T +G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREG 131
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
+ + GH + C F + ++T S D +W +ET + GH GD+
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D ++W + +G+ GH + + AI F P + + SDD TCR+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRL 252
Query: 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 443
+D R Q + + + G I +F+ +G + + G D
Sbjct: 253 FDLRADQ---ELMTYSHDNIICG---------------ITSVSFSKSGRLLLAGYDDFNC 294
Query: 444 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 485
VW+A K + VL+GH+N V+ + + G AVA+
Sbjct: 295 NVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 283 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVW--R 340
R ++G+ D K+W + C + GHE DI D R++ R
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 400
L +T+++FS + G + LL+ DD C +WDA +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFS-KSGRL--LLAGYDDFNCNVWDALKAD---------R 304
Query: 401 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +AG + +++ C +G TGS D+ ++WN
Sbjct: 305 AGVLAGHD-----------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 604 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 663
+L GH Y + + R+ +SA DGK I+WD + + + ++ ++P
Sbjct: 50 TLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 664 GASIILS--DDVGQLYILNTGQG 684
G + D++ +Y L T +G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREG 131
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
+ + GH + C F + ++T S D +W +ET + GH GD+
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D ++W + +G+ GH + + AI F P + + SDD TCR+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRL 252
Query: 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 443
+D R Q + + + G I +F+ +G + + G D
Sbjct: 253 FDLRADQ---ELMTYSHDNIICG---------------ITSVSFSKSGRLLLAGYDDFNC 294
Query: 444 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 485
VW+A K + VL+GH+N V+ + + G AVA+
Sbjct: 295 NVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 283 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVW--R 340
R ++G+ D K+W + C + GHE DI D R++ R
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 400
L +T+++FS + G + LL+ DD C +WDA +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFS-KSGRL--LLAGYDDFNCNVWDALKAD---------R 304
Query: 401 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +AG + +++ C +G TGS D+ ++WN
Sbjct: 305 AGVLAGHD-----------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 604 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 663
+L GH Y + + R+ +SA DGK I+WD + + + ++ ++P
Sbjct: 50 TLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 664 GASIILS--DDVGQLYILNTGQG 684
G + D++ +Y L T +G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREG 131
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
+ + GH + C F + ++T S D +W +ET + GH GD+
Sbjct: 137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 383
D ++W + +G+ GH + + AI F P + + SDD TCR+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRL 252
Query: 384 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 443
+D R Q + + + G I +F+ +G + + G D
Sbjct: 253 FDLRADQ---ELMTYSHDNIICG---------------ITSVSFSKSGRLLLAGYDDFNC 294
Query: 444 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 485
VW+A K + VL+GH+N V+ + + G AVA+
Sbjct: 295 NVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 283 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVW--R 340
R ++G+ D K+W + C + GHE DI D R++ R
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 341 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 400
L +T+++FS + G + LL+ DD C +WDA +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFS-KSGRL--LLAGYDDFNCNVWDALKAD---------R 304
Query: 401 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ +AG + +++ C +G TGS D+ ++WN
Sbjct: 305 AGVLAGHD-----------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 604 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 663
+L GH Y + + R+ +SA DGK I+WD + + + ++ ++P
Sbjct: 50 TLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 664 GASIILS--DDVGQLYILNTGQG 684
G + D++ +Y L T +G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREG 131
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXX 325
+RGH +V G V++GS D + +W + CL GH I
Sbjct: 266 LRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERK 323
Query: 326 XXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
D IR+W L +G L+GHTA V + S + L+S++ DG+ R WD
Sbjct: 324 RCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF-----LVSAAADGSIRGWD 378
Query: 386 A 386
A
Sbjct: 379 A 379
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 79/217 (36%), Gaps = 29/217 (13%)
Query: 266 VRGHRNAVY-CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXX 324
+RGH +V C F+ + YVITG+DD+ ++++ L GH+G +
Sbjct: 117 LRGHXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVW-ALKYAHG 173
Query: 325 XXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 384
D +RVW + G V GH + V + Y +++ S D T +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHVW 232
Query: 385 DARYSQFSPR--------IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 436
P + P + P + H + +G + V+
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEE-------NPYFVGVLRGHXASVRTVSGHGNIVVS 285
Query: 437 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV 473
GS D VW+ + + +LSGH + +
Sbjct: 286 GSYDNTLIVWDVAQXKC---------LYILSGHTDRI 313
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 30/143 (20%)
Query: 268 GHRNAVYC--AIFDRSGRYVITGSDDRLVKIWSM-----------------------ETA 302
GH + V C + ++ +Y++TGS D + +W + E
Sbjct: 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 303 YCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAF 362
Y + RGH + D + VW + + +L GHT + + +
Sbjct: 261 YFVGVLRGHXASV--RTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIY 318
Query: 363 SPRPGSVYQLLSSSDDGTCRIWD 385
+ +S+S D T RIWD
Sbjct: 319 DHERK---RCISASXDTTIRIWD 338
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 63/315 (20%), Positives = 119/315 (37%), Gaps = 80/315 (25%)
Query: 335 IIRVWRLPDGLPI-SVLRGH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 392
I++ W P +P + LRGH T+ +T + F +++ +DD R++D+ +F
Sbjct: 101 ILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDN-----YVITGADDKXIRVYDSINKKFL 155
Query: 393 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 452
++ +G + ++ + A+G + V+GS+D RVW+ K
Sbjct: 156 LQL---------SGHDGG-----------VWALKY-AHGGILVSGSTDRTVRVWDIKKGC 194
Query: 453 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 512
V GH + V + ++KN + IV
Sbjct: 195 CTH---------VFEGHNSTVRCLDI--------------------VEYKNIKY----IV 221
Query: 513 TCSRDGSAIIW-IPR--SRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRG 569
T SRD + +W +P+ S H + + +H + RG
Sbjct: 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH-------------TPEENPYFVGVLRG 268
Query: 570 VNMIVWSLDNR--FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 627
V ++ V++ D + VW+ A ++ L+GHT+ Y ++ + +S
Sbjct: 269 HXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYS-TIYDHERKRCIS 327
Query: 628 AGYDGKTIVWDIWEG 642
A D +WD+ G
Sbjct: 328 ASXDTTIRIWDLENG 342
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 583 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638
++A D I +W+ +G L ++L GHT +L + + + +SA DG WD
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWD 378
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 81/218 (37%), Gaps = 32/218 (14%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI--TDXXXX 321
K V H N + F S ++T S D +W +E+ L S GH D+ D
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 322 XXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381
D VW + G + H + V ++ + P G + S SDD TC
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFA--SGSDDATC 264
Query: 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 441
R++D R + + I + G + F+ +G + G +D
Sbjct: 265 RLYDLRADR---EVAIYSKESIIFGASSVD---------------FSLSGRLLFAGYNDY 306
Query: 442 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 479
VW+ K + + +L GHEN V+ ++ S
Sbjct: 307 TINVWDVLKGS---------RVSILFGHENRVSTLRVS 335
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 582 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP-RIAMSAGYDGKTIVWDIW 640
+L A D +W+ G L+ S GH LD+ P +S G D K +VWD+
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 641 EGIPIRIYEISRFRLVDGKFSPDG 664
G ++ +E + ++ P G
Sbjct: 229 SGQCVQAFETHESDVNSVRYYPSG 252
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
G + + +SL R + A D I VW+ GS V L GH L V P S
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC-SG 344
Query: 629 GYDGKTIVW 637
+D VW
Sbjct: 345 SWDHTLRVW 353
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 259 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIW----SMETAYCLASCRGHEGD 314
+M + + GH N V + G Y+ T S D+ V IW S E C++ + H D
Sbjct: 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Query: 315 ITDXXXXXXXXXXXXXXXDCIIRVWR--LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 372
+ D +R+W+ D ++VL GH V + F G V++L
Sbjct: 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG-VFRL 214
Query: 373 LSSSDDGTCRIW 384
S SDD T R+W
Sbjct: 215 CSGSDDSTVRVW 226
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 246 ACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL 305
A + +A P+ + + + + GHR AV FD +Y+++ S DR +K+W+ T +
Sbjct: 236 AVWDMASPTDITLR----RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFV 289
Query: 306 ASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR 365
+ GH+ I D IR+W + G + VL GH V I F +
Sbjct: 290 RTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 347
Query: 366 PGSVYQLLSSSDDGTCRIWDARYSQFSPR 394
+++S + DG ++WD + PR
Sbjct: 348 -----RIVSGAYDGKIKVWDL-VAALDPR 370
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 81/221 (36%), Gaps = 43/221 (19%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXX 327
GH +V C +D R +ITGS D V++W + T L + H +
Sbjct: 171 GHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRFNNGMM 226
Query: 328 XXXXXDCIIRVWRLPDGLPIS---VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 384
D I VW + I+ VL GH AAV + F + ++S+S D T ++W
Sbjct: 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-----YIVSASGDRTIKVW 281
Query: 385 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR 444
+ +F + H+ + V+GSSD R
Sbjct: 282 NTSTCEFVRTL----------------------NGHKRGIACLQYRDRLVVSGSSDNTIR 319
Query: 445 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 485
+W+ + + VL GHE V ++F + S
Sbjct: 320 LWDI---------ECGACLRVLEGHEELVRCIRFDNKRIVS 351
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 322
++ + GH+ + C + R V++GS D +++W +E CL GHE +
Sbjct: 289 VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV--RCIRF 344
Query: 323 XXXXXXXXXXDCIIRVW--------RLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLL 373
D I+VW R P G L + L H+ V + F +Q++
Sbjct: 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE-----FQIV 399
Query: 374 SSSDDGTCRIWD 385
SSS D T IWD
Sbjct: 400 SSSHDDTILIWD 411
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 76/214 (35%), Gaps = 37/214 (17%)
Query: 272 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXX 331
VYC +D + +++G D +KIW T C GH G +
Sbjct: 135 GVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL--CLQYDERVIITGS 190
Query: 332 XDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 391
D +RVW + G ++ L H AV + F+ +++ S D + +WD
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-----MMVTCSKDRSIAVWD------ 239
Query: 392 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKP 451
+ P+D R + H+ + + V+ S D +VWN
Sbjct: 240 -----MASPTDITLRRVLV--------GHRAAVNVVDFDDKYIVSASGDRTIKVWNT--- 283
Query: 452 NTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 485
+ L+GH+ + +Q+ V S
Sbjct: 284 ------STCEFVRTLNGHKRGIACLQYRDRLVVS 311
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 569 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 628
VN++ D++++++A D I VWN + V +L GH L + R+ +S
Sbjct: 258 AVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ---YRDRLVVSG 312
Query: 629 GYDGKTIVWDIWEGIPIRIYE 649
D +WDI G +R+ E
Sbjct: 313 SSDNTIRLWDIECGACLRVLE 333
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 579 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638
+R V++ D I +W+ G+ + L GH E + F+ + +S YDGK VWD
Sbjct: 306 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI---RFDNKRIVSGAYDGKIKVWD 362
Query: 639 I 639
+
Sbjct: 363 L 363
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 578 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 637
D R ++ D + VW+ G ++++L H E+ L FN + ++ D VW
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL---RFNNGMMVTCSKDRSIAVW 238
Query: 638 DI 639
D+
Sbjct: 239 DM 240
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 27/223 (12%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDI--TDXXXXXX 323
H ++ A+ D G+ + T S D+ +KI+ +E T + + GHEG + D
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 324 XXXXXXXXXDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381
D + +W+ +G I+V H+A+V ++ ++P L++SSD G
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-GKV 125
Query: 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV----FVTG 437
+ + + + + I I + V + AP++ H NGT FVTG
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH---------NGTKESRKFVTG 176
Query: 438 SSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFS 479
+D L ++W +SD + ++ L GH + V V +S
Sbjct: 177 GADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWS 213
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 601 LVHSLTGHTESTYVLD-VHPFNPRIAMSAGYDGKTIVW 637
L+ +LTGH + +D HP I S YDGK ++W
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 27/223 (12%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDI--TDXXXXXX 323
H ++ A+ D G+ + T S D+ +KI+ +E T + + GHEG + D
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 324 XXXXXXXXXDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381
D + +W+ +G I+V H+A+V ++ ++P L++SSD G
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-GKV 127
Query: 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV----FVTG 437
+ + + + + I I + V + AP++ H NGT FVTG
Sbjct: 128 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH---------NGTKESRKFVTG 178
Query: 438 SSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFS 479
+D L ++W +SD + ++ L GH + V V +S
Sbjct: 179 GADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWS 215
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 601 LVHSLTGHTESTYVLD-VHPFNPRIAMSAGYDGKTIVW 637
L+ +LTGH + +D HP I S YDGK ++W
Sbjct: 47 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDI--TDXXXXXX 323
H ++ A+ D G+ + T S D+ +KI+ +E T + + GHEG + D
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 324 XXXXXXXXXDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381
D + +W+ +G I+V H+A+V ++ ++P LL +S DG
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKV 125
Query: 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV----FVTG 437
+ + + + + I I + V + AP++ H NGT FVTG
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH---------NGTKESRKFVTG 176
Query: 438 SSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFS 479
+D L ++W +SD + ++ L GH + V V +S
Sbjct: 177 GADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWS 213
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 601 LVHSLTGHTESTYVLD-VHPFNPRIAMSAGYDGKTIVW 637
L+ +LTGH + +D HP I S YDGK ++W
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 27/223 (12%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDI--TDXXXXXX 323
H ++ A+ D G+ + T S D+ +KI+ +E T + + GHEG + D
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 324 XXXXXXXXXDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381
D + +W+ +G I+V H+A+V ++ ++P L++SSD G
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-GKV 125
Query: 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV----FVTG 437
+ + + + + I I + V + AP++ H NGT FVTG
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH---------NGTKESRKFVTG 176
Query: 438 SSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFS 479
+D L ++W +SD + ++ L GH + V V +S
Sbjct: 177 GADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWS 213
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 601 LVHSLTGHTESTYVLD-VHPFNPRIAMSAGYDGKTIVW 637
L+ +LTGH + +D HP I S YDGK ++W
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 40/231 (17%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 316
V + +R GH++ V D+ +I+GS D+ +K+W+++ CLA+ GH ++
Sbjct: 94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152
Query: 317 ------DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 370
+ D +++ W L + GH + + + SP G++
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTL- 210
Query: 371 QLLSSSDDGTCRIWD-----ARYS----------QFSPRIYIPRPSDAVAGRNMA----- 410
+ S+ DG +W+ A Y+ FSP Y + A + +
Sbjct: 211 -IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 411 ---------PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 452
SA + H + A++A+G G +D + RVW N
Sbjct: 270 LVDDLRPEFAGYSAAAEPHAV-SLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 322
++ +GH + V G Y ++ S D+ +++W + T GH+ D+
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 323 XXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS---VYQLLSSSDDG 379
D I+VW + G ++ L GH V+ + P + ++S+ +D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 380 TCRIWDARYSQF 391
+ W+ Q
Sbjct: 177 MVKAWNLNQFQI 188
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 284 YVITGSDDRLVKIWSMETAYCL-ASCRGHEGDITDXXXX-XXXXXXXXXXXDCIIRVWRL 341
YV++GSDD VK+W+ E + L + GHE + D ++VW L
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 342 PDGLP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 400
P ++ G V + + P P Y ++++SDD T +IWD Y +
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWD----------YQTKS 219
Query: 401 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 448
A +M+ S A F+ + ++GS D ++WN+
Sbjct: 220 CVATLEGHMSNVSFA----------VFHPTLPIIISGSEDGTLKIWNS 257
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 568 RGVNMI-VWSL-DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 625
RGVN + + L D +++ A D I +W+ S V +L GH + HP P I
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-II 243
Query: 626 MSAGYDGKTIVWD 638
+S DG +W+
Sbjct: 244 ISGSEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 615 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 674
+D HP P + ++ Y G+ +W+ + +R +++ + GKF II+ D
Sbjct: 19 IDFHPTEPWV-LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 675 QLYILNTGQGESQKD 689
++ + N GE D
Sbjct: 78 RIRVFNYNTGEKVVD 92
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 283 RYVITGSDDRLVKIWSM---ETAYCLASCRGHEGDITDXXXXXXXXXXXXX-XXDCIIRV 338
R ++ SD V++W + ET C+ DI D I+V
Sbjct: 94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153
Query: 339 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 398
W L + +S R H A VT +A SP SV+ LS S+D +WD R P
Sbjct: 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF--LSCSEDNRILLWDTR---------CP 202
Query: 399 RPSDAV--AGRNMAPSSSAG-PQSHQIFCCAFNANGTVFVTGSSDT 441
+P+ + + P+S A PQ ++F + NGTV + + T
Sbjct: 203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFG-DENGTVSLVDTKST 247
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 284 YVITGSDDRLVKIWSMETAYCL-ASCRGHEGDITDXXXXXXXXXXXXXX-XDCIIRVWRL 341
YV++GSDD VK+W+ E + L + GHE + D ++VW L
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 342 PDGLP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 400
P ++ G V + + P P Y ++++SDD T +IWD Y +
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWD----------YQTKS 219
Query: 401 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 448
A +M+ S A F+ + ++GS D ++WN+
Sbjct: 220 CVATLEGHMSNVSFA----------VFHPTLPIIISGSEDGTLKIWNS 257
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 568 RGVNMI-VWSL-DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 625
RGVN + + L D +++ A D I +W+ S V +L GH + HP P I
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-II 243
Query: 626 MSAGYDGKTIVWD 638
+S DG +W+
Sbjct: 244 ISGSEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 615 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 674
+D HP P + ++ Y G+ +W+ + +R +++ + GKF II+ D
Sbjct: 19 IDFHPTEPWV-LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 675 QLYILNTGQGESQKD 689
++ + N GE D
Sbjct: 78 RIRVFNYNTGEKVVD 92
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 258 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS-------------METAYC 304
Q + + GH + V A+F + +I+GS+D +KIW+ +E ++C
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275
Query: 305 LAS 307
+A+
Sbjct: 276 IAT 278
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 284 YVITGSDDRLVKIWSMETAYCL-ASCRGHEGDITDXXXXXXXXXXXXXX-XDCIIRVWRL 341
YV++GSDD VK+W+ E + L + GHE + D ++VW L
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 342 PDGLP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 400
P ++ G V + + P P Y ++++SDD T +IWD Y +
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWD----------YQTKS 219
Query: 401 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 448
A +M+ S A F+ + ++GS D ++WN+
Sbjct: 220 CVATLEGHMSNVSFA----------VFHPTLPIIISGSEDGTLKIWNS 257
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 568 RGVNMI-VWSL-DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 625
RGVN + + L D +++ A D I +W+ S V +L GH + HP P I
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-II 243
Query: 626 MSAGYDGKTIVWD 638
+S DG +W+
Sbjct: 244 ISGSEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 615 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 674
+D HP P + ++ Y G+ +W+ + +R +++ + GKF II+ D
Sbjct: 19 IDFHPTEPWV-LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 675 QLYILNTGQGESQKD 689
++ + N GE D
Sbjct: 78 RIRVFNYNTGEKVVD 92
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 258 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS-------------METAYC 304
Q + + GH + V A+F + +I+GS+D +KIW+ +E ++C
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275
Query: 305 LAS 307
+A+
Sbjct: 276 IAT 278
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 284 YVITGSDDRLVKIWSMETAYCL-ASCRGHEGDITDXXXXXXXXXXXXXX-XDCIIRVWRL 341
YV++GSDD VK+W+ E + L + GHE + D ++VW L
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 342 PDGLP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 400
P ++ G V + + P P Y ++++SDD T +IWD Y +
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWD----------YQTKS 219
Query: 401 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 448
A +M+ S A F+ + ++GS D ++WN+
Sbjct: 220 CVATLEGHMSNVSFA----------VFHPTLPIIISGSEDGTLKIWNS 257
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 568 RGVNMI-VWSL-DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 625
RGVN + + L D +++ A D I +W+ S V +L GH + HP P I
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-II 243
Query: 626 MSAGYDGKTIVWD 638
+S DG +W+
Sbjct: 244 ISGSEDGTLKIWN 256
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 615 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 674
+D HP P + ++ Y G+ +W+ + +R +++ + GKF II+ D
Sbjct: 19 IDFHPTEPWV-LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 675 QLYILNTGQGESQKD 689
++ + N GE D
Sbjct: 78 RIRVFNYNTGEKVVD 92
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 21/189 (11%)
Query: 260 MQNIKRVRGHRNAVYCAIFDRS--GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD 317
M + R H + V C F S +++G D LVK+W + T + +GH +T
Sbjct: 143 MHTLSR-GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTS 201
Query: 318 XXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 377
D + R+W L G +S + A + I FSP Y + ++++
Sbjct: 202 VTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GAPINQICFSPNR---YWMCAATE 257
Query: 378 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 437
G RI+D + I + + + + P + A++A+G+ +G
Sbjct: 258 KGI-RIFDLE----NKDIIVELAPEHQGSKKIVP---------ECVSIAWSADGSTLYSG 303
Query: 438 SSDTLARVW 446
+D + RVW
Sbjct: 304 YTDNVIRVW 312
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 22/188 (11%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
+R+ GH V +G + ++ S D +++W+++ C GH D+
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382
D +RVW + ++ RG HT V+ + FSP + ++S D +
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV-IVSGGWDNLVK 179
Query: 383 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 442
+WD + +D N S + P +G++ + D +
Sbjct: 180 VWDLATGRLV--------TDLKGHTNYVTSVTVSP------------DGSLCASSDKDGV 219
Query: 443 ARVWNACK 450
AR+W+ K
Sbjct: 220 ARLWDLTK 227
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 573 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHP-FNPRIAMSAG 629
+ +S DNR +++ D + VWN G +H+L+ HT+ + P + + +S G
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG 173
Query: 630 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD--VGQLYILNTGQGESQ 687
+D VWD+ G + + + SPDG+ SD V +L+ L G+ S+
Sbjct: 174 WDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE 233
Query: 688 KDA 690
A
Sbjct: 234 MAA 236
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 570 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 629
V+ + S + F ++A D + +WN +G + GHT+ + P N +I +S G
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI-VSGG 128
Query: 630 YDGKTIVWDIWEGIPIRIYEISRFRLVDG----KFSPD-GASIILS---DDVGQLYILNT 681
D VW++ +G ++ +SR D +FSP A +I+S D++ +++ L T
Sbjct: 129 RDNALRVWNV-KGEC--MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLAT 185
Query: 682 GQ 683
G+
Sbjct: 186 GR 187
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 27/223 (12%)
Query: 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDI--TDXXXXXX 323
H ++ A+ D G+ T S D+ +KI+ +E T + + GHEG + D
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 324 XXXXXXXXXDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 381
D + +W+ +G I+V H+A+V ++ ++P LL +S DG
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-XLLVASSDGKV 125
Query: 382 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV----FVTG 437
+ + + + + I I + V + AP++ H NGT FVTG
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH---------NGTKESRKFVTG 176
Query: 438 SSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFS 479
+D L ++W +SD + ++ L GH + V V +S
Sbjct: 177 GADNLVKIWKY------NSDAQTYVLESTLEGHSDWVRDVAWS 213
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 40/231 (17%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 316
V + +R GH++ V D+ +I+GS D+ +K+W+++ CLA+ GH ++
Sbjct: 94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152
Query: 317 ------DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 370
+ D +++ W L + GH + + + SP G++
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTL- 210
Query: 371 QLLSSSDDGTCRIWD-----ARYS----------QFSPRIYIPRPSDAVAGRNMA----- 410
+ S+ DG +W+ A Y+ FSP Y + A + +
Sbjct: 211 -IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 411 ---------PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 452
S + H + A++A+G G +D + RVW N
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 322
++ +GH + V G Y ++ S D+ +++W + T GH+ D+
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 323 XXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS---VYQLLSSSDDG 379
D I+VW + G ++ L GH V+ + P + ++S+ +D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 380 TCRIWDARYSQF 391
+ W+ Q
Sbjct: 177 MVKAWNLNQFQI 188
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 40/231 (17%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 316
V + +R GH++ V D+ +I+GS D+ +K+W+++ CLA+ GH ++
Sbjct: 94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152
Query: 317 ------DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 370
+ D +++ W L + GH + + + SP G++
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTL- 210
Query: 371 QLLSSSDDGTCRIWD-----ARYS----------QFSPRIYIPRPSDAVAGRNMA----- 410
+ S+ DG +W+ A Y+ FSP Y + A + +
Sbjct: 211 -IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 411 ---------PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 452
S + H + A++A+G G +D + RVW N
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 322
++ +GH + V G Y ++ S D+ +++W + T GH+ D+
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 323 XXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS---VYQLLSSSDDG 379
D I+VW + G ++ L GH V+ + P + ++S+ +D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 380 TCRIWDARYSQF 391
+ W+ Q
Sbjct: 177 MVKAWNLNQFQI 188
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 31/222 (13%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
+ ++GH VY + ++++ S D + +W+ T+ + + H + +
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 324 XXXXXXXXXDCIIRVWRLP-----DG-LPIS-VLRGHTAAVTAIAFSPRPGSVYQLLSSS 376
D ++ L DG +P+S VL GH ++ + P + +L++ S
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET--RLITGS 177
Query: 377 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 436
D TC +WD Q RI ++ G +A S I + NAN +F++
Sbjct: 178 GDQTCVLWDVTTGQ---RI-------SIFGSEFPSGHTADVLSLSIN--SLNAN--MFIS 223
Query: 437 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 478
GS DT R+W D + + GHE D+N V+F
Sbjct: 224 GSCDTTVRLW--------DLRITSRAVRTYHGHEGDINSVKF 257
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 27/169 (15%)
Query: 286 ITGSDDRLVKIWSME-TAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDG 344
I+GS D V++W + T+ + + GHEGDI D R++ + G
Sbjct: 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281
Query: 345 LPISVLR-------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 397
+ V VT++AFS S L + +G C +WD ++ +
Sbjct: 282 HQLQVYNREPDRNDNELPIVTSVAFSI---SGRLLFAGYSNGDCYVWDTLLAEMVLNLGT 338
Query: 398 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
+ S +I C +++G+ TGS D ++W
Sbjct: 339 LQNS----------------HEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 594 WNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF 653
+N D +L GH+ Y LD P I +SA DG+ IVW+ ++
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWI-VSASQDGRLIVWNALTSQKTHAIKLHCP 109
Query: 654 RLVDGKFSPDGASI 667
+++ F+P+G S+
Sbjct: 110 WVMECAFAPNGQSV 123
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 40/231 (17%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 316
V + +R GH++ V D+ +I+GS D+ +K+W+++ CLA+ GH ++
Sbjct: 88 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 146
Query: 317 ------DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 370
+ D +++ W L + GH + + + SP G++
Sbjct: 147 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTL- 204
Query: 371 QLLSSSDDGTCRIWD-----ARYS----------QFSPRIYIPRPSDAVAGRNMA----- 410
+ S+ DG +W+ A Y+ FSP Y + A + +
Sbjct: 205 -IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 263
Query: 411 ---------PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 452
S + H + A++A+G G +D + RVW N
Sbjct: 264 LVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 322
++ +GH + V G Y ++ S D+ +++W + T GH+ D+
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 323 XXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS---VYQLLSSSDDG 379
D I+VW + G ++ L GH V+ + P + ++S+ +D
Sbjct: 112 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 380 TCRIWDARYSQF 391
+ W+ Q
Sbjct: 171 MVKAWNLNQFQI 182
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 40/225 (17%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 316
V + +R GH++ V D+ +I+GS D+ +K+W+++ CLA+ GH ++
Sbjct: 94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152
Query: 317 ------DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 370
+ D +++ W L + GH + + + SP G++
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTL- 210
Query: 371 QLLSSSDDGTCRIWD-----ARYS----------QFSPRIYIPRPSDAVAGRNMA----- 410
+ S+ DG +W+ A Y+ FSP Y + A + +
Sbjct: 211 -IASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 411 ---------PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
S + H + A++A+G G +D + RVW
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDNVIRVW 313
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 322
++ +GH + V G Y ++ S D+ +++W + T GH+ D+
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 323 XXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS---VYQLLSSSDDG 379
D I+VW + G ++ L GH V+ + P + ++S+ +D
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 380 TCRIWDARYSQF 391
+ W+ Q
Sbjct: 177 MVKAWNLNQFQI 188
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 573 IVWSLDNRFVLAA-IMDCRICVWNAADGSLVH-------SLTGHTESTYVLDVHPFNPRI 624
I W N V+A+ DC + VW DG LV +L GHT+ ++ HP +
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 625 AMSAGYDGKTIVWDIWEGIPI 645
+SAG D +VWD+ G +
Sbjct: 147 LLSAGXDNVILVWDVGTGAAV 167
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 333 DCIIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
DC + VW +PDG P+ L GHT V +A+ P +V LLS+ D +WD
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV--LLSAGXDNVILVWD 160
Query: 386 A 386
Sbjct: 161 V 161
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 573 IVWSLDNRFVLAA-IMDCRICVWNAADGSLVH-------SLTGHTESTYVLDVHPFNPRI 624
I W N V+A+ DC + VW DG LV +L GHT+ ++ HP +
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 625 AMSAGYDGKTIVWDIWEGIPI 645
+SAG D +VWD+ G +
Sbjct: 147 LLSAGCDNVILVWDVGTGAAV 167
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 333 DCIIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
DC + VW +PDG P+ L GHT V +A+ P +V LLS+ D +WD
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV--LLSAGCDNVILVWD 160
Query: 386 A 386
Sbjct: 161 V 161
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 44/229 (19%)
Query: 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT---- 316
+ +R GH++ V D+ +I+GS D+ +K+W+++ CLA+ GH ++
Sbjct: 98 ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRV 156
Query: 317 --DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 374
+ D ++ W L + GH + + + SP G++ + S
Sbjct: 157 VPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTL--IAS 213
Query: 375 SSDDGTCRIWD-----ARYS----------QFSPRIYIPRPSDAVAGR-----------N 408
+ DG +W+ A Y+ FSP Y + A + +
Sbjct: 214 AGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 409 MAP-----SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 452
+ P S +A P + + A++A+G G +D + RVW N
Sbjct: 274 LRPEFAGYSKAAEPHAVSL---AWSADGQTLFAGYTDNVIRVWQVXTAN 319
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
Query: 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXX 322
++ +GH + V G Y ++ S D+ +++W + T GH+ D+
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 323 XXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS---VYQLLSSSDDG 379
D I+VW + G ++ L GH V+ + P + ++S+ +D
Sbjct: 118 KASXIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 380 TCRIWD 385
+ W+
Sbjct: 177 XVKAWN 182
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 18/182 (9%)
Query: 269 HRNAVYCAIF--DRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXX 326
H V C F + S +++ D+LVK+W++ + GH G +
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 229
Query: 327 XXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
D +W L +G + L G + A+ FSP Y L +++ + +IWD
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNR---YWLCAATGP-SIKIWD- 283
Query: 387 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
+I + D + ++ SS A P Q A++A+G G +D L RVW
Sbjct: 284 ----LEGKIIV----DELKQEVISTSSKAEPP--QCTSLAWSADGQTLFAGYTDNLVRVW 333
Query: 447 NA 448
Sbjct: 334 QV 335
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
+ +RGH + V + G++ ++GS D +++W + T GH D+
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382
D I++W +V H+ V+ + FSP + ++S D +
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI-IVSCGWDKLVK 198
Query: 383 IWD 385
+W+
Sbjct: 199 VWN 201
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 31/131 (23%)
Query: 333 DCIIRVWRLPD-----GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D I +W+L G+P LRGH+ V+ + S LS S DGT R+WD
Sbjct: 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA---LSGSWDGTLRLWDLT 116
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ R ++ D + AF+++ V+GS D ++WN
Sbjct: 117 TGTTTRR-FVGHTKD-------------------VLSVAFSSDNRQIVSGSRDKTIKLWN 156
Query: 448 ---ACKPNTDD 455
CK D
Sbjct: 157 TLGVCKYTVQD 167
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 579 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638
N +++ D + VWN A+ L + GHT + V P + + S G DG+ ++WD
Sbjct: 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWD 243
Query: 639 IWEGIPIRIYEISRFRLVDGK-FSPD--------GASIILSDDVGQLYI 678
+ EG +Y + +++ FSP+ G SI + D G++ +
Sbjct: 244 LNEG--KHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV 290
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/197 (17%), Positives = 74/197 (37%), Gaps = 23/197 (11%)
Query: 258 QKMQNIKR--VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 315
+ + N+ R VR H +AVY A F G+ + + D+ ++++ ET L + HE ++
Sbjct: 607 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV 666
Query: 316 TDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 375
D +++W G + H+ V F+ + L +
Sbjct: 667 LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLL-LATG 725
Query: 376 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 435
S D ++WD + ++ ++ + C F+ + +
Sbjct: 726 SSDCFLKLWDLNQKECRNTMF--------------------GHTNSVNHCRFSPDDKLLA 765
Query: 436 TGSSDTLARVWNACKPN 452
+ S+D ++W+A N
Sbjct: 766 SCSADGTLKLWDATSAN 782
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 25/180 (13%)
Query: 269 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXX 328
H+ V+ F + +I+ SDD +++W+ + C+ RGH+ + D
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLLS 1066
Query: 329 XXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 388
D ++VW + G H V + S + S+S D T +IW
Sbjct: 1067 WSF-DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT---KFSSTSADKTAKIWSFD- 1121
Query: 389 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 448
+ P + G N + C AF+ + T+ TG + R+WN
Sbjct: 1122 --------LLLPLHELRGHNGC-----------VRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 37.4 bits (85), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 336 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 395
+ +W ++ RGH + V + FSP S L+SSDD T R+W+ + + +
Sbjct: 870 VELWNTDSRSKVADCRGHLSWVHGVMFSPDGSS---FLTSSDDQTIRLWETKKVCKNSAV 926
Query: 396 YIPRPSDAVAGRN 408
+ + D V N
Sbjct: 927 MLKQEVDVVFQEN 939
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 575 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG-YDGK 633
+S D+RF+ +D ++ +WN+ G LVH+ H+E + + ++ G D
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF 730
Query: 634 TIVWDIWEGIPIRIYEISRFRLVD-GKFSPDGASIILSDDVGQLYILNTGQGESQKDAKY 692
+WD+ + R V+ +FSPD + G L + + +K
Sbjct: 731 LKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINV 789
Query: 693 DQFFLGDYRP 702
QFFL P
Sbjct: 790 KQFFLNLEDP 799
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 593 VWNAADGSLVHSLT------GHTESTYVLDVHPFNP--RIAMSAGYDGKTIVWDIWEGIP 644
+WN ++G L+H T +V D+ F+P ++ +SAG G W++ G
Sbjct: 1159 IWNVSNGELLHLCAPLSEEGAATHGGWVTDL-CFSPDGKMLISAG--GYIKWWNVVTGES 1215
Query: 645 IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 681
+ + + L SPD + + D++G LYIL T
Sbjct: 1216 SQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQT 1252
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 263 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC 308
+ +RGH V C+ F + TG D+ ++IW++ L C
Sbjct: 1126 LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLC 1171
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 18/182 (9%)
Query: 269 HRNAVYCAIF--DRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXX 326
H V C F + S +++ D+LVK+W++ + GH G +
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 206
Query: 327 XXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
D +W L +G + L G + A+ FSP Y L +++ + +IWD
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNR---YWLCAATGP-SIKIWD- 260
Query: 387 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
+I + D + ++ SS A P Q A++A+G G +D L RVW
Sbjct: 261 ----LEGKIIV----DELKQEVISTSSKAEPP--QCTSLAWSADGQTLFAGYTDNLVRVW 310
Query: 447 NA 448
Sbjct: 311 QV 312
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
+ +RGH + V + G++ ++GS D +++W + T GH D+
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 382
D I++W +V H+ V+ + FSP + ++S D +
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI-IVSCGWDKLVK 175
Query: 383 IWD 385
+W+
Sbjct: 176 VWN 178
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 31/131 (23%)
Query: 333 DCIIRVWRLPD-----GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 387
D I +W+L G+P LRGH+ V+ + S LS S DGT R+WD
Sbjct: 37 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA---LSGSWDGTLRLWDLT 93
Query: 388 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
+ R ++ D + AF+++ V+GS D ++WN
Sbjct: 94 TGTTTRR-FVGHTKD-------------------VLSVAFSSDNRQIVSGSRDKTIKLWN 133
Query: 448 ---ACKPNTDD 455
CK D
Sbjct: 134 TLGVCKYTVQD 144
Score = 34.3 bits (77), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 579 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638
N +++ D + VWN A+ L + GHT + V P + + S G DG+ ++WD
Sbjct: 162 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWD 220
Query: 639 IWEGIPIRIYEISRFRLVDGK-FSPD--------GASIILSDDVGQLYI 678
+ EG +Y + +++ FSP+ G SI + D G++ +
Sbjct: 221 LNEG--KHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV 267
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 309 RGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 368
+ H +IT D +++W + DG L GH A VT IA R +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 369 VYQLLSSSDDGTCRIWD 385
V LS+S DGT R+W+
Sbjct: 196 V---LSASLDGTIRLWE 209
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%)
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXX 326
+ H + + F SG +I+ S D +KIWS++ + GH +TD
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 327 XXXXXXDCIIRVWRLPDGLPI 347
D IR+W G I
Sbjct: 196 VLSASLDGTIRLWECGTGTTI 216
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 582 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN-PRIAMSAGYDGKTIVWDIW 640
++++ D ++ +W+ DGS +L GH + V D+ + R +SA DG +W+
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRAT--VTDIAIIDRGRNVLSASLDGTIRLWECG 211
Query: 641 EGIPIRIY 648
G I +
Sbjct: 212 TGTTIHTF 219
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 309 RGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 368
+ H +IT D +++W + DG L GH A VT IA R +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 369 VYQLLSSSDDGTCRIWD 385
V LS+S DGT R+W+
Sbjct: 193 V---LSASLDGTIRLWE 206
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%)
Query: 267 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXX 326
+ H + + F SG +I+ S D +KIWS++ + GH +TD
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 327 XXXXXXDCIIRVWRLPDGLPI 347
D IR+W G I
Sbjct: 193 VLSASLDGTIRLWECGTGTTI 213
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 582 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN-PRIAMSAGYDGKTIVWDIW 640
++++ D ++ +W+ DGS +L GH + V D+ + R +SA DG +W+
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRAT--VTDIAIIDRGRNVLSASLDGTIRLWECG 208
Query: 641 EGIPIRIY 648
G I +
Sbjct: 209 TGTTIHTF 216
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 18/141 (12%)
Query: 260 MQNIKR--VRGHRNAVYCAIFDRSGR------YVITGSDDRLVKIWSM----ETAYC--- 304
+Q +KR + GH + V + S + +I+GS D+ V IW + + Y
Sbjct: 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP 68
Query: 305 LASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 364
+ GH ++D D +R+W L G GH + V ++AFSP
Sbjct: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 365 RPGSVYQLLSSSDDGTCRIWD 385
Q+LS+ + ++W+
Sbjct: 129 DN---RQILSAGAEREIKLWN 146
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 247 CYAIAKPSTMVQKMQNI------KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME 300
C+AI+ ++ ++ KR GH++ VY F R +++ +R +K+W++
Sbjct: 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI- 147
Query: 301 TAYCLASCR 309
L C+
Sbjct: 148 ----LGECK 152
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 576 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 635
S +N F +++ D + +W+ G+ GH Y + P N +I +SAG + +
Sbjct: 85 SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI-LSAGAEREIK 143
Query: 636 VWDI 639
+W+I
Sbjct: 144 LWNI 147
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 11/135 (8%)
Query: 264 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXX 323
K + GH + V + + I+ S D+ +++W + T GH+ ++
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 324 XXXXXXXXXDCIIRVWRLPDGLPISVL--RGHTAAVTAIAFSP--------RPGSVYQLL 373
+ I++W + S H+ V+ + +SP +P + Y
Sbjct: 130 NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY-FA 188
Query: 374 SSSDDGTCRIWDARY 388
S DG ++W+ +
Sbjct: 189 SVGWDGRLKVWNTNF 203
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 288 GSDDRLVKIWSMETAYCLASCRGHEG--DITDXXXXXXXXXXXXXXXDCIIRVWRLPDGL 345
G+ DR ++IW++ + CL++ H I + ++ +W+ P
Sbjct: 297 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV-IWKYPTMA 355
Query: 346 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 384
++ L+GHT+ V ++ SP +V S++ D T R+W
Sbjct: 356 KVAELKGHTSRVLSLTMSPDGATV---ASAAADETLRLW 391
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 27/169 (15%)
Query: 305 LASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDG----LPISVLRGHTAAVTAI 360
+A+ GH ++ D ++ VW G +P+ H AV A+
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 361 AFSPRPGSVYQLLSSSDDGTCRIWDA----------RYSQFSPRIYIPRPSDAVAGR--- 407
A+ P +V + D RIW+ +SQ ++ P + ++G
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 342
Query: 408 ----------NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
MA + + ++ + +G + ++D R+W
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 288 GSDDRLVKIWSMETAYCLASCRGHEG--DITDXXXXXXXXXXXXXXXDCIIRVWRLPDGL 345
G+ DR ++IW++ + CL++ H I + ++ +W+ P
Sbjct: 308 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV-IWKYPTMA 366
Query: 346 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 384
++ L+GHT+ V ++ SP +V S++ D T R+W
Sbjct: 367 KVAELKGHTSRVLSLTMSPDGATV---ASAAADETLRLW 402
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 27/169 (15%)
Query: 305 LASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDG----LPISVLRGHTAAVTAI 360
+A+ GH ++ D ++ VW G +P+ H AV A+
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 361 AFSPRPGSVYQLLSSSDDGTCRIWDA----------RYSQFSPRIYIPRPSDAVAGR--- 407
A+ P +V + D RIW+ +SQ ++ P + ++G
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 353
Query: 408 ----------NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
MA + + ++ + +G + ++D R+W
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 38.9 bits (89), Expect = 0.026, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 1703 QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKR 1762
+ ++ + PL L I+ ++ YY+ +EA D+ + NAE Y+GR + + + R
Sbjct: 44 KNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCR 103
Query: 1763 L 1763
L
Sbjct: 104 L 104
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.7 bits (86), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 336 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ---FS 392
+++ L G +L+GH + A+++SPR Y L ++S D ++WD R + +
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--YILATASADSRVKLWDVRRASGCLIT 225
Query: 393 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 448
+ + S AV N A + ++ F ++G +T +D R+WN+
Sbjct: 226 LDQHNGKKSQAVESANTA-------HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG--DITD 317
+Q + +G AV + + G+ DR ++IW++ + CL++ H I
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 248
Query: 318 XXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 377
+ ++ +W+ P ++ L+GHT+ V ++ SP +V S++
Sbjct: 249 SPHYKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATV---ASAAA 304
Query: 378 DGTCRIW 384
D T R+W
Sbjct: 305 DETLRLW 311
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 27/169 (15%)
Query: 305 LASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDG----LPISVLRGHTAAVTAI 360
+A+ GH ++ D ++ VW G +P+ H AV A+
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 361 AFSPRPGSVYQLLSSSDDGTCRIWDA----------RYSQFSPRIYIPRPSDAVAGR--- 407
A+ P +V + D RIW+ +SQ ++ P + ++G
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262
Query: 408 ----------NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 446
MA + + ++ + +G + ++D R+W
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773
P+ L+ I+ RLEN YY D M SN Y D+ + L L + LS
Sbjct: 56 PMDLNTIKKRLENKYYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEKLFMQKLSQ 115
Query: 1774 LKAPQ 1778
+ PQ
Sbjct: 116 M--PQ 118
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 263 IKRVRGHRNAVYCAIFDRSGR----YVITGSDDRLVKIWSM--ETAYCLASCRGHEGDIT 316
K+ + H +A++ + + + V+TGS D LVK+W E S GH+ +
Sbjct: 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV 84
Query: 317 DXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 364
D IR+W L +G I + +AFSP
Sbjct: 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 34/83 (40%)
Query: 282 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRL 341
G+Y+ +G+ D ++ I+ + T L + GH I D I+++ +
Sbjct: 176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Query: 342 PDGLPISVLRGHTAAVTAIAFSP 364
L GH + V +AF P
Sbjct: 236 QHANLAGTLSGHASWVLNVAFCP 258
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 573 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 632
I +S D +++ + +D I +++ A G L+H+L GH L P + ++ ++A DG
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDG 228
Query: 633 KTIVWDI 639
++D+
Sbjct: 229 YIKIYDV 235
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 23/116 (19%)
Query: 333 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 392
D II ++ + G + L GH + ++ FSP L+++SDDG +I+D +++
Sbjct: 185 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS---QLLVTASDDGYIKIYDVQHA--- 238
Query: 393 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 448
N+A + S + + AF + T FV+ SSD +VW+
Sbjct: 239 ---------------NLAGTLSG--HASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 333 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 392
D ++VW L + H++ V +A P +++ LS +DG +WD R + +
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF--LSCGEDGRILLWDTRKPKPA 217
Query: 393 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 426
RI D A + S + P+ F C
Sbjct: 218 TRI------DFCASDTIPTSVTWHPEKDDTFACG 245
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 588 DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 638
D + VW+ + +++ S H+ + P I +S G DG+ ++WD
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 275 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE--------GDITDXXXXXXXXX 326
C D + R +IT ++ ++ T + L GH D+
Sbjct: 106 CVCQDNTVRLIITKNE-------TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 158
Query: 327 XXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
DC + +WRL D PI L G+ + I+ RP + QL+ +G RI+D
Sbjct: 159 IASVGDDCTLIIWRLTDEGPI--LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 215
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 275 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE--------GDITDXXXXXXXXX 326
C D + R +IT ++ ++ T + L GH D+
Sbjct: 107 CVCQDNTVRLIITKNE-------TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 159
Query: 327 XXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 385
DC + +WRL D PI L G+ + I+ RP + QL+ +G RI+D
Sbjct: 160 IASVGDDCTLIIWRLTDEGPI--LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 216
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 35.0 bits (79), Expect = 0.41, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 37/62 (59%)
Query: 1706 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1765
++ + +P+SL I+++L+N Y L+ ++ D+ +M NA+ Y N+ + ++ +L
Sbjct: 55 DYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQ 114
Query: 1766 LV 1767
++
Sbjct: 115 VM 116
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain
Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain
Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain
Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt In
Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt In
Complex With The Inhibitor Jq1
Length = 119
Score = 34.7 bits (78), Expect = 0.46, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773
P+ L+ I+ RLEN YY D M SN Y D+ + L L + LS
Sbjct: 55 PMDLNTIKKRLENKYYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQ 114
Query: 1774 LKAPQ 1778
+ PQ
Sbjct: 115 M--PQ 117
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 333 DCIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 386
D ++ +W + G +P+S+L+ H A + + F P + L + S+DG+ WDA
Sbjct: 258 DGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF--HPSNPEHLFTCSEDGSLWHWDA 310
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 600 SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG-IPIRIYEISRFRLVDG 658
S + SLTG + +D HP + + G DG +WD+ +G +P+ + + + +
Sbjct: 227 SQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV 286
Query: 659 KFSP 662
F P
Sbjct: 287 HFHP 290
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 336 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 384
I V+++ + P L GH ++ + F+ LLS+SDDGT RIW
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTN---KLLLSASDDGTLRIW 274
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 409 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 447
A S+S+G ++Q+ C A++ +G VTG + R+WN
Sbjct: 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN 136
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773
P+ + I+ RLENNYY D M +N Y D+ + L + + ++S
Sbjct: 74 PMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVAS 133
Query: 1774 LKAPQ 1778
+ PQ
Sbjct: 134 M--PQ 136
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 14/135 (10%)
Query: 265 RVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSM-------ETAYCLASCRGHEGDIT 316
R+RGH+ Y ++ + ++++ SDD V +W + + A GH +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 317 DXX-XXXXXXXXXXXXXDCIIRVWRLPDGL---PISVLRGHTAAVTAIAFSPRPGSVYQL 372
D D + +W P ++ HTA V ++F+P S + L
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY--SEFIL 291
Query: 373 LSSSDDGTCRIWDAR 387
+ S D T +WD R
Sbjct: 292 ATGSADKTVALWDLR 306
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 570 VNMIVWSLDNRFVLA-AIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMS 627
VN + ++ + F+LA D + +W+ + L +H+ H + + + P N I S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 628 AGYDGKTIVWDI 639
+G D + VWD+
Sbjct: 338 SGTDRRLNVWDL 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 14/135 (10%)
Query: 265 RVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSM-------ETAYCLASCRGHEGDIT 316
R+RGH+ Y ++ + ++++ SDD V +W + + A GH +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 317 DXX-XXXXXXXXXXXXXDCIIRVWRLPDGL---PISVLRGHTAAVTAIAFSPRPGSVYQL 372
D D + +W P ++ HTA V ++F+P S + L
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY--SEFIL 291
Query: 373 LSSSDDGTCRIWDAR 387
+ S D T +WD R
Sbjct: 292 ATGSADKTVALWDLR 306
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 570 VNMIVWSLDNRFVLA-AIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMS 627
VN + ++ + F+LA D + +W+ + L +H+ H + + + P N I S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 628 AGYDGKTIVWDI 639
+G D + VWD+
Sbjct: 338 SGTDRRLNVWDL 349
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4-
Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4-
Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4-
Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 1-(2-Methyl-1,2,3,
4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 1-(2-Methyl-1,2,3,
4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 1-(2-Methyl-1,2,3,
4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4-
Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4-
Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4-
Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5 Ethyl-3-Methyl-
4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5 Ethyl-3-Methyl-
4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5 Ethyl-3-Methyl-
4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773
P+ + I+ RLENNYY D M +N Y D+ + L + + ++S
Sbjct: 74 PMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVAS 133
Query: 1774 LKAPQ 1778
+ PQ
Sbjct: 134 M--PQ 136
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773
P+ + I+ RLENNYY + D M +N Y D+ + L L + ++
Sbjct: 83 PMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINE 142
Query: 1774 L 1774
L
Sbjct: 143 L 143
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1766
P+ L ++ ++EN YR + D+ +M SN Y + D+ ++L D+
Sbjct: 46 PMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDV 98
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In
Complex With The Inhibitor Jq1
Length = 114
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1766
P+ L ++ ++EN YR + D+ +M SN Y + D+ ++L D+
Sbjct: 52 PMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDV 104
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 565 PTPR----------GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV 614
PTPR + S D++ + D I VW+ + +LV GHT+
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188
Query: 615 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 674
+D+ ++ + G D WD+ EG ++ ++ + ++ + P G + + +
Sbjct: 189 IDISNDGTKL-WTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESS 246
Query: 675 QLYILNTGQ 683
+ +L+ +
Sbjct: 247 NVEVLHVNK 255
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1766
P+ L ++ ++EN YR + D+ +M SN Y + D+ ++L D+
Sbjct: 50 PMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDV 102
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 32/145 (22%)
Query: 363 SPRPGSVYQ---------LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 413
SPR G+V L+ + G IWD R++ V R+ +
Sbjct: 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN--------------VLIRSWSFGD 256
Query: 414 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK-------PNTDDSDQPNHEIDVL 466
A P +H C + N + V GSS T +WN K N+D+ H + +
Sbjct: 257 HA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE 315
Query: 467 SGHENDVNYVQFSGCAVASRFSLAD 491
G E ++N+ S S+++
Sbjct: 316 KGLE-ELNFCGIRSLNALSTISVSN 339
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In Complex
With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773
P+ + I+ RLENNYY + D M +N Y D+ + L L + ++
Sbjct: 67 PMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINE 126
Query: 1774 L 1774
L
Sbjct: 127 L 127
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Quinazoline Ligand
Length = 127
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773
P+ + I+ RLENNYY + D M +N Y D+ + L L + ++
Sbjct: 63 PMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINE 122
Query: 1774 L 1774
L
Sbjct: 123 L 123
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 570 VNMIVWSLDNRFVLA-AIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMS 627
VN + ++ + F+LA D + +W+ + L +HS H + + + P N I S
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 628 AGYDGKTIVWDI 639
+G D + VWD+
Sbjct: 344 SGTDRRLHVWDL 355
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409
LRGH ++++P LLS+SDD T +WD + P+ + +N+
Sbjct: 181 LRGHQKEGYGLSWNPNLNGY--LLSASDDHTICLWDINAT--------PKEHRVIDAKNI 230
Query: 410 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 469
+A + + ++F + + D +W+ NT +P+H +D H
Sbjct: 231 FTGHTAVVED----VAWHLLHESLFGSVADDQKLMIWDTRNNNT---SKPSHTVD---AH 280
Query: 470 ENDVNYVQFSGCAVASRFSLADSSKEDST 498
+VN + F+ S F LA S + +
Sbjct: 281 TAEVNCLSFNP---YSEFILATGSADKTV 306
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/131 (18%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 570 VNMIVWSLDNRFVLAAIMD-CRICVWNAADGSLV---HSLTGHTESTYVLDVHPFNPRIA 625
V + W L + + ++ D ++ +W+ + + H++ HT L +P++ I
Sbjct: 238 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 297
Query: 626 MSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILSDDVG-QLYILN--- 680
+ D +WD+ + + +E + + ++SP +I+ S +L++ +
Sbjct: 298 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
Query: 681 TGQGESQKDAK 691
G+ +S +DA+
Sbjct: 358 IGEEQSTEDAE 368
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain
Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773
P+ + I+ RLENNYY + D M +N Y D+ + L L + ++
Sbjct: 63 PMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINE 122
Query: 1774 L 1774
L
Sbjct: 123 L 123
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 570 VNMIVWSLDNRFVLA-AIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMS 627
VN + ++ + F+LA D + +W+ + L +HS H + + + P N I S
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 628 AGYDGKTIVWDI 639
+G D + VWD+
Sbjct: 342 SGTDRRLHVWDL 353
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409
LRGH ++++P LLS+SDD T +WD + P+ + +N+
Sbjct: 179 LRGHQKEGYGLSWNPNLNGY--LLSASDDHTICLWDINAT--------PKEHRVIDAKNI 228
Query: 410 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 469
+A + + ++F + + D +W+ NT +P+H +D H
Sbjct: 229 FTGHTAVVED----VAWHLLHESLFGSVADDQKLMIWDTRNNNT---SKPSHTVD---AH 278
Query: 470 ENDVNYVQFSGCAVASRFSLADSSKEDST 498
+VN + F+ S F LA S + +
Sbjct: 279 TAEVNCLSFNP---YSEFILATGSADKTV 304
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/131 (18%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 570 VNMIVWSLDNRFVLAAIMD-CRICVWNAADGSLV---HSLTGHTESTYVLDVHPFNPRIA 625
V + W L + + ++ D ++ +W+ + + H++ HT L +P++ I
Sbjct: 236 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 295
Query: 626 MSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILSDDVG-QLYILN--- 680
+ D +WD+ + + +E + + ++SP +I+ S +L++ +
Sbjct: 296 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
Query: 681 TGQGESQKDAK 691
G+ +S +DA+
Sbjct: 356 IGEEQSTEDAE 366
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 570 VNMIVWSLDNRFVLA-AIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMS 627
VN + ++ + F+LA D + +W+ + L +HS H + + + P N I S
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 628 AGYDGKTIVWDI 639
+G D + VWD+
Sbjct: 340 SGTDRRLHVWDL 351
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409
LRGH ++++P LLS+SDD T +WD + P+ + +N+
Sbjct: 177 LRGHQKEGYGLSWNPNLNGY--LLSASDDHTICLWDINAT--------PKEHRVIDAKNI 226
Query: 410 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 469
+A + + ++F + + D +W+ NT +P+H +D H
Sbjct: 227 FTGHTAVVED----VAWHLLHESLFGSVADDQKLMIWDTRNNNT---SKPSHTVD---AH 276
Query: 470 ENDVNYVQFSGCAVASRFSLADSSKEDST 498
+VN + F+ S F LA S + +
Sbjct: 277 TAEVNCLSFNP---YSEFILATGSADKTV 302
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/131 (18%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 570 VNMIVWSLDNRFVLAAIMD-CRICVWNAADGSLV---HSLTGHTESTYVLDVHPFNPRIA 625
V + W L + + ++ D ++ +W+ + + H++ HT L +P++ I
Sbjct: 234 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 293
Query: 626 MSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILSDDVG-QLYILN--- 680
+ D +WD+ + + +E + + ++SP +I+ S +L++ +
Sbjct: 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
Query: 681 TGQGESQKDAK 691
G+ +S +DA+
Sbjct: 354 IGEEQSTEDAE 364
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 570 VNMIVWSLDNRFVLA-AIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMS 627
VN + ++ + F+LA D + +W+ + L +HS H + + + P N I S
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 628 AGYDGKTIVWDI 639
+G D + VWD+
Sbjct: 336 SGTDRRLNVWDL 347
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 23/149 (15%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409
LRGH ++++P LLS+SDD T +WD +P+ V + +
Sbjct: 173 LRGHQKEGYGLSWNPNLSG--HLLSASDDHTICLWDIS--------AVPKEGKVVDAKTI 222
Query: 410 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 469
+A + + ++F + + D +W+ NT +P+H +D H
Sbjct: 223 FTGHTAVVEDVSWHLL----HESLFGSVADDQKLMIWDTRSNNT---SKPSHSVD---AH 272
Query: 470 ENDVNYVQFSGCAVASRFSLADSSKEDST 498
+VN + F+ S F LA S + +
Sbjct: 273 TAEVNCLSFNPY---SEFILATGSADKTV 298
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 3/131 (2%)
Query: 257 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-YCLASCRGHEGDI 315
V+ ++ + GH+ V C ++R + +GS + + A + + + +GH ++
Sbjct: 163 VESQTKLRTMAGHQARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220
Query: 316 TDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 375
D ++++W +P H AAV A+A+ P ++
Sbjct: 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280
Query: 376 SDDGTCRIWDA 386
+ D W+A
Sbjct: 281 TMDKQIHFWNA 291
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 570 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 617
+N++ WS N V+A ++ + VWNA GS V +L ESTYV V
Sbjct: 96 LNLLDWS--NLNVVAVALERNVYVWNADSGS-VSALAETDESTYVASV 140
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 32.3 bits (72), Expect = 2.3, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRL 1763
P+ L ++ +LE+N Y+ +E +D ++ +N Y G NT RL
Sbjct: 53 PMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRL 102
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 261 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR 309
+ + + GH ++ D +Y +TGS D +K+W + C+A+ +
Sbjct: 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK 113
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 568 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 627
R + + ++ + + + D VW + +G + +L GHT + + +DV F + ++
Sbjct: 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-KYCVT 91
Query: 628 AGYDGKTIVWDIWEG---------IPIRIYEIS 651
D +WD+ G +P++ E S
Sbjct: 92 GSADYSIKLWDVSNGQCVATWKSPVPVKRVEFS 124
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1766
P+ + I+S+LE+ YR + D+ +M SN Y + ++ ++L D+
Sbjct: 54 PMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDV 106
>pdb|1GWS|A Chain A, Hexadecaheme High Molecular Weight Cytochrome Hmc From
Desulfovibrio Vulgaris Hildenborough
pdb|2CVC|A Chain A, Crystal Structure Of High-Molecular Weight Cytochrome C
From Desulfovibrio Vulgaris (Hildenborough)
Length = 545
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 27 DMALRKYIPSADAP---SGTMKPLSFSSKVHE 55
D AL +P DAP GTMKP++F K HE
Sbjct: 271 DAALILPVPGKDAPREMKGTMKPVAFDHKAHE 302
>pdb|1H29|A Chain A, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|B Chain B, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|C Chain C, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|D Chain D, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
Length = 514
Score = 32.0 bits (71), Expect = 3.4, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 27 DMALRKYIPSADAP---SGTMKPLSFSSKVHE 55
D AL +P DAP GTMKP++F K HE
Sbjct: 240 DAALILPVPGKDAPREMKGTMKPVAFDHKAHE 271
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773
P+ + I+ RLENNYY D M +N Y D+ + L + + ++
Sbjct: 61 PMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ 120
Query: 1774 LKAPQ 1778
+ PQ
Sbjct: 121 M--PQ 123
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1766
P+ + I+S+LE YR + D+ +M SN Y + ++ ++L D+
Sbjct: 46 PMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDV 98
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain
Containing Protein 3
Length = 138
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773
P+ + I+ RLENNYY D M +N Y D+ + L + + ++
Sbjct: 63 PMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ 122
Query: 1774 LKAPQ 1778
+ PQ
Sbjct: 123 M--PQ 125
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3
(Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein 3
(Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3 In
Complex With The Inhibitor Jq1
Length = 123
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1773
P+ + I+ RLENNYY D M +N Y D+ + L + + ++
Sbjct: 59 PMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ 118
Query: 1774 LKAPQ 1778
+ PQ
Sbjct: 119 M--PQ 121
>pdb|3N8T|A Chain A, Native Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3N92|A Chain A, Crystal Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis, In
Complex With Glucose
pdb|3N98|A Chain A, Crystal Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis, In
Complex With Glucose And Additives
Length = 562
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 22/104 (21%)
Query: 1602 WWKNESDEDGSWWDGRVLSV-KPKSSEFPDSPWERYTVQYKTEPTETHL----------H 1650
WW +G W GRVL + + E P R+ +Y E E L H
Sbjct: 361 WWF-----EGVKWLGRVLELLYQRGVETPT--LSRFLEEYSGEKHEIELPEGSWGANSDH 413
Query: 1651 SPWELFDSDTQWEQPRI--DDDNRNKLLSAFAKLEQSANRVQDQ 1692
S W ++ +T+W P I +D ++S F ++ NRV +Q
Sbjct: 414 STW--WNEETEWTWPHIYRAEDRMVAIVSRFRGRDELTNRVIEQ 455
>pdb|3D5L|A Chain A, Crystal Structure Of Regulatory Protein Recx
pdb|3D5L|B Chain B, Crystal Structure Of Regulatory Protein Recx
Length = 221
Score = 30.8 bits (68), Expect = 6.4, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 975 RKHSKGKGISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLV 1034
R+H + KGI D +D TPE ++L LKL R N+ E R K Q +
Sbjct: 133 RQHLRQKGIGESDIDDALTQFTPEVQAELA-KKLALKLFRRYRNQPE--RRREQKVQQGL 189
Query: 1035 SVIGTSSEAHQ 1045
+ G SS ++
Sbjct: 190 TTKGFSSSVYE 200
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 30.8 bits (68), Expect = 7.0, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1766
P+ + I+S+LE YR + D+ +M SN Y + ++ ++L D+
Sbjct: 65 PMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDV 117
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain
Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 30.8 bits (68), Expect = 7.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 1714 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1766
P+ + I+S+LE YR + D+ +M SN Y + ++ ++L D+
Sbjct: 67 PMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDV 119
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 350 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 409
H+++V + F+ + +V L S ++G IWD SP Y P G++M
Sbjct: 109 FSNHSSSVKTVKFNAKQDNV--LASGGNNGEIFIWDMNKCTESPSNYTPL----TPGQSM 162
Query: 410 APSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWN 447
+ ++ A+N + VF + S A +W+
Sbjct: 163 S-------SVDEVISLAWNQSLAHVFASAGSSNFASIWD 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,226,821
Number of Sequences: 62578
Number of extensions: 2378630
Number of successful extensions: 6234
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 5161
Number of HSP's gapped (non-prelim): 651
length of query: 1784
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1671
effective length of database: 7,902,023
effective search space: 13204280433
effective search space used: 13204280433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)