Query 000251
Match_columns 1784
No_of_seqs 1296 out of 5092
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 18:05:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000251.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_28-31//hhsearch_pdb/000251hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 456.4 52.3 534 216-824 612-1208(1249)
2 1nr0_A Actin interacting prote 1.0 1 1 446.8 50.2 507 215-816 14-604 (611)
3 2ymu_A WD-40 repeat protein; u 1.0 1 1 431.9 57.9 206 262-482 8-233 (577)
4 2ymu_A WD-40 repeat protein; u 1.0 1 1 424.6 55.2 494 215-811 12-568 (577)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 423.2 51.1 369 262-707 607-1022(1249)
6 1nr0_A Actin interacting prote 1.0 1 1 421.8 49.5 462 268-820 16-519 (611)
7 3mkq_A Coatomer beta'-subunit; 1.0 1 1 395.5 49.5 432 260-810 3-486 (814)
8 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 383.2 44.0 415 217-685 15-521 (902)
9 1pgu_A Actin interacting prote 1.0 1 1 380.4 46.4 490 215-822 14-571 (615)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 379.7 45.2 490 266-821 13-659 (902)
No 1
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=456.39 Aligned_cols=534 Identities=18% Similarity=0.205 Sum_probs=389.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEE
Q ss_conf 75544300233111378521025785032220234466532234217899806798789999979999999982874799
Q 000251 216 HMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVK 295 (1784)
Q Consensus 216 ~~~~~~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~~~~~~~~~~~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIk 295 (1784)
..|.+.|.++.+.+.|. .+++++....+..|...+.+.+.++.+|...|.+++|+|+|++||+|+.||.|+
T Consensus 612 ~~h~~~v~~~~~s~~~~---------~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQ---------RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp CCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ECCCCCEEEEEECCCCC---------EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEE
T ss_conf 16666489999879999---------899994889499999899978887606777789999926999899981899599
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEE
Q ss_conf 997778918999806789859999957--999999984897899998999970588417788559999527999507999
Q 000251 296 IWSMETAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLL 373 (1784)
Q Consensus 296 IWDi~tg~~l~tL~gH~~~VtsIafSP--Dg~lLASGS~DGtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~Lv 373 (1784)
|||+.+++.+.++.+|...|.+++|++ ++.++++|+.|+.|++||+.++.++..+.+|.+.|++++|+|++. +|+
T Consensus 683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~ 759 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE---LLA 759 (1249)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT---EEE
T ss_pred EEECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCC---EEE
T ss_conf 98779993689995899737999984089965999980897099998999634220127779788999925999---899
Q ss_pred EEECCCCEEEEECCCCCCCCEEECCCCCCCC-----------CCCCC------------------------CCCCCCCCC
Q ss_conf 9928990999936788665525137999732-----------48887------------------------888889999
Q 000251 374 SSSDDGTCRIWDARYSQFSPRIYIPRPSDAV-----------AGRNM------------------------APSSSAGPQ 418 (1784)
Q Consensus 374 Sgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~-----------~g~~~------------------------~~~~s~~~h 418 (1784)
+++.||.|++||+.++.....+......... ..-.. ........|
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred EEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCC
T ss_conf 99789859999688886553020232102467764456501799999789988999758959999956897235774787
Q ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 97638999877998899940895099973899999899999851233037888800799826762333334578888888
Q 000251 419 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 498 (1784)
Q Consensus 419 ~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~ 498 (1784)
...+.+++|+|++.++++++.++.|++|++.+ ...+..+.+|...|.+++|+|++
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~---------~~~~~~~~~h~~~v~~v~~spdg---------------- 894 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDS---------RLKVADCRGHLSWVHGVMFSPDG---------------- 894 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSCEEEEETTT---------TEEEEEECCCSSCEEEEEECTTS----------------
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCC---------CCEEEECCCCCCCEEEEEECCCC----------------
T ss_conf 77607999827888899994798699998678---------95653227876656899998999----------------
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC---C------CCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 755565566870899807980999927888888532221122---2------4569999999999999983000589997
Q 000251 499 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA---Y------HLKVPPPPMPPQPPRGGPRQRILPTPRG 569 (1784)
Q Consensus 499 ~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~---~------~l~~~~~~~~~~~~~~~~~~~l~~h~~~ 569 (1784)
..+++++.||.|++|++.+............. . ...... .....................
T Consensus 895 ----------~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 963 (1249)
T 3sfz_A 895 ----------SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDN-IRGLQLIAGKTGQIDYLPEAQ 963 (1249)
T ss_dssp ----------SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEES-SSSEEEEEESSCCEEEECCSC
T ss_pred ----------CEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC-CCCEEEEECCCCEEEECCCCC
T ss_conf ----------989999589728988746652010211331036897599868998137-762489844765089725672
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf 12999868997899995397399998899945999806999849999905999499999589929999689992289986
Q 000251 570 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE 649 (1784)
Q Consensus 570 VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~ 649 (1784)
+.+++|+|++.++++|+.+|.|++|++.+++....+.+|...|++++|+| ++.++++++.||.|++|++.++..+.. .
T Consensus 964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~-~ 1041 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVFL-Q 1041 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEECC-B
T ss_pred EEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECC-CCCEEEEECCCCEEEEEECCCCCEEEE-E
T ss_conf 78999958997799986999889997578723443036777168999989-999899986998799998799966898-5
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCC------CCCCEEECCCCCCEEECCCCCEEECCCCCCCCCC
Q ss_conf 0685357999937999999995897099999899831135------5331133179850688147862312211146768
Q 000251 650 ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKD------AKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRR 723 (1784)
Q Consensus 650 ~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~~------~~~~~~fs~D~r~Li~d~~g~Vld~~tql~p~l~ 723 (1784)
.+...+.++.|+|++ .+++++.+|.|++|++.+++.... ......|+++++.++.......+
T Consensus 1042 ~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v----------- 1109 (1249)
T 3sfz_A 1042 AHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA----------- 1109 (1249)
T ss_dssp CCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCC-----------
T ss_pred CCCCCEEEEEECCCC-CEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCE-----------
T ss_conf 278738999990899-58999788968998889886558874668848999998999989998499948-----------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCCCC-----------CCC
Q ss_conf 878756678888899951001010016622069879998499961899887268401798662237-----------876
Q 000251 724 NLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID-----------PLP 792 (1784)
Q Consensus 724 ~i~~~L~D~~~~p~p~~~q~l~~~r~~gv~~iAfSPDG~~LAvg~d~s~~~~i~l~~l~~~~~li~-----------plp 792 (1784)
.+||..... ....+.++...+.+++|||||.+||++ +.++.+.+|++.++..+.. ...
T Consensus 1110 ----~iwd~~~~~----~~~~l~~h~~~v~~~~~s~dg~~lat~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1178 (1249)
T 3sfz_A 1110 ----KIWSFDLLS----PLHELKGHNGCVRCSAFSLDGILLATG---DDNGEIRIWNVSDGQLLHSCAPISVEEGTATHG 1178 (1249)
T ss_dssp ----CEECSSSSS----CSBCCCCCSSCEEEEEECSSSSEEEEE---ETTSCCCEEESSSSCCCCCCCCCC-------CC
T ss_pred ----EEEECCCCC----EEEEECCCCCCEEEEEECCCCCEEEEE---ECCCEEEEEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf ----998789850----012550687767999997999989998---289979999889994578851444442102567
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54101354799884357999965554357742
Q 000251 793 EFIDVMDWEPENEVQSDDNDSEYNVAEEYSTE 824 (1784)
Q Consensus 793 ~~i~~iafsPDg~~ls~~~~~~~~~~e~~~s~ 824 (1784)
..+..++|+||+..+...+ +.+..|+..+.
T Consensus 1179 ~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1179 GWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208 (1249)
T ss_dssp SCCCEEEECTTSSCEEEES--SSEEEBCSSSC
T ss_pred CEEEEEEECCCCCEEEECC--CEEEEEECCCC
T ss_conf 4289999978999899779--85999898889
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=446.83 Aligned_cols=507 Identities=15% Similarity=0.186 Sum_probs=373.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEE
Q ss_conf 87554430023311137852102578503222023446653223421789980679878999997999999998287479
Q 000251 215 PHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLV 294 (1784)
Q Consensus 215 p~~~~~~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~~~~~~~~~~~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtI 294 (1784)
|..+...+..+.+.+.|..++ ++.. .....|.+...+...+|.+|...|++++|+|+|++||+|+.|++|
T Consensus 14 ~~~~~g~~~~~~~spdg~~l~---------~~~~-~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v 83 (611)
T 1nr0_A 14 PRTARGTAVVLGNTPAGDKIQ---------YCNG-TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV 83 (611)
T ss_dssp CCCCTTCCCCCEECTTSSEEE---------EEET-TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCCCCCEEEEEECCCCCEEE---------ECCC-CEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCE
T ss_conf 974068236976679999799---------6799-979994578724273765899865999999999689999489978
Q ss_pred EEEECCCC--EEEEEEECCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCC
Q ss_conf 99977789--1899980678985999995799999998489----78999989999705884177885599995279995
Q 000251 295 KIWSMETA--YCLASCRGHEGDITDLAVSSNNALVASASND----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 368 (1784)
Q Consensus 295 kIWDi~tg--~~l~tL~gH~~~VtsIafSPDg~lLASGS~D----GtIrIWDl~tgk~i~~l~gH~~~VtsIafSPdg~~ 368 (1784)
+|||+.++ ....++.+|.+.|.+++|+|++++|++++.+ +.|++|+ .+..+..+.+|...|++++|+|++.
T Consensus 84 ~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~- 160 (611)
T 1nr0_A 84 RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRP- 160 (611)
T ss_dssp EEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSS-
T ss_pred EEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCCCCEECCCCCCCEEEEECCCCC-
T ss_conf 9948989841566762255784489998999997999989977366999963--8997632547889836999889998-
Q ss_pred CEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECC
Q ss_conf 07999992899099993678866552513799973248887888889999976389998779988999408950999738
Q 000251 369 VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 448 (1784)
Q Consensus 369 ~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl 448 (1784)
..|++++.|++|++||...+++...+ ..|...|.+++|+|+|.+|++++.|+.|++|++
T Consensus 161 -~~l~s~s~D~~v~lwd~~~~~~~~~l--------------------~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 161 -FRIISGSDDNTVAIFEGPPFKFKSTF--------------------GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp -CEEEEEETTSCEEEEETTTBEEEEEE--------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred -EEEEEEECCCEEEEEECCCCEEEEEE--------------------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
T ss_conf -29999928980999979997576652--------------------002571699999799998999989991999889
Q ss_pred CCCCCCCCCCCCCCEEEEC-------CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 9999989999985123303-------788880079982676233333457888888875556556687089980798099
Q 000251 449 CKPNTDDSDQPNHEIDVLS-------GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 521 (1784)
Q Consensus 449 ~t~~~~~s~~~~~~i~~l~-------gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIr 521 (1784)
.++. .+..+. +|.+.|.+++|+|++ ..|++++.|++|+
T Consensus 220 ~~g~---------~~~~~~~~~~~~~~h~~~V~~v~~spdg--------------------------~~l~s~s~D~~v~ 264 (611)
T 1nr0_A 220 VDGT---------KTGVFEDDSLKNVAHSGSVFGLTWSPDG--------------------------TKIASASADKTIK 264 (611)
T ss_dssp TTCC---------EEEECBCTTSSSCSSSSCEEEEEECTTS--------------------------SEEEEEETTSEEE
T ss_pred CCCC---------EEEEECCCCCCCCCCCCCEEEEEECCCC--------------------------CEEEEEECCCEEE
T ss_conf 9982---------8665136643235667878999997999--------------------------9999990898099
Q ss_pred EEECCCCCCCCCCCCCC----CCCCCC----------CCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 99278888885322211----222456----------9999999999999983000589997129998689978999953
Q 000251 522 IWIPRSRRSHPKAARWT----QAYHLK----------VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 587 (1784)
Q Consensus 522 IWDl~t~~~~~~~~~w~----~~~~l~----------~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~ 587 (1784)
+||+.+++......... ....+. ............+.....+.+|...|++++|+|+|++|++++.
T Consensus 265 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~ 344 (611)
T 1nr0_A 265 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA 344 (611)
T ss_dssp EEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEEC
T ss_conf 99688870134404788766406899973887999958996899968899744698378888899999189998999958
Q ss_pred CCEEEEEECCCCCEEEEE-ECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCE----------------------
Q ss_conf 973999988999459998-069998499999059994999995899299996899922----------------------
Q 000251 588 DCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP---------------------- 644 (1784)
Q Consensus 588 DGsIrIWDl~tgkli~~L-~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~---------------------- 644 (1784)
|+.|++||+.++.+...+ .+|...|.+++|++ ++ .+++++.|+.+++|++..+.+
T Consensus 345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~-~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 422 (611)
T 1nr0_A 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTS-KG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 422 (611)
T ss_dssp TSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTT
T ss_pred CCCEEEEECCCCCEEEECCCCCCCEEEEEEECC-CC-CEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECC
T ss_conf 984999978879256321667765078999878-99-6999984896689546885435652120014899707998079
Q ss_pred -------------------EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCC-------CCCCCCEEECC
Q ss_conf -------------------8998606853579999379999999958970999998998311-------35533113317
Q 000251 645 -------------------IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ-------KDAKYDQFFLG 698 (1784)
Q Consensus 645 -------------------i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~-------~~~~~~~~fs~ 698 (1784)
+..+. +...+.+++|+|||++||+++.|+.|++|++..+... ........|+|
T Consensus 423 g~~~~~~~~~~v~~~~~~~~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fsp 501 (611)
T 1nr0_A 423 GDIAVAACYKHIAIYSHGKLTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 501 (611)
T ss_dssp SSCEEEEESSEEEEEETTEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT
T ss_pred CCEEEEEECCEEEEEECCCEEEEE-CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECC
T ss_conf 969999967639998489434640-6889549999289989999689973999994599222410157788607999989
Q ss_pred CCCCEEECCCCCE---EECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCC
Q ss_conf 9850688147862---3122111467688787566788888999510010100166220698799984999618998872
Q 000251 699 DYRPLVQDTYGNV---LDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQG 775 (1784)
Q Consensus 699 D~r~Li~d~~g~V---ld~~tql~p~l~~i~~~L~D~~~~p~p~~~q~l~~~r~~gv~~iAfSPDG~~LAvg~d~s~~~~ 775 (1784)
|++.|+....... ++..... .. + ...++.+|...+.+++|||||++||++ +.+..
T Consensus 502 dg~~las~s~d~~v~~w~~~~~~----~~----~-----------~~~~~~~H~~~V~~v~fspdg~~lasg---s~D~~ 559 (611)
T 1nr0_A 502 NGAFLVATDQSRKVIPYSVANNF----EL----A-----------HTNSWTFHTAKVACVSWSPDNVRLATG---SLDNS 559 (611)
T ss_dssp TSSEEEEEETTSCEEEEEGGGTT----EE----S-----------CCCCCCCCSSCEEEEEECTTSSEEEEE---ETTSC
T ss_pred CCCEEEEECCCCCEEEEECCCCC----CE----E-----------EEEEEEECCCCEEEEEECCCCCEEEEE---ECCCC
T ss_conf 99989999489989998857787----22----3-----------210264046642589989989979999---79972
Q ss_pred EEEECCCCCCCCC----CCC-CCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 6840179866223----787-6541013547998843579999655
Q 000251 776 YQLQPLADLDVMI----DPL-PEFIDVMDWEPENEVQSDDNDSEYN 816 (1784)
Q Consensus 776 i~l~~l~~~~~li----~pl-p~~i~~iafsPDg~~ls~~~~~~~~ 816 (1784)
+++|++..+.... ... ...+..++|+||+. +.....++.+
T Consensus 560 v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i 604 (611)
T 1nr0_A 560 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNI 604 (611)
T ss_dssp EEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCE
T ss_pred EEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEEECCCCCE
T ss_conf 99997887555632644467656711899858997-9995288778
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=431.93 Aligned_cols=206 Identities=26% Similarity=0.472 Sum_probs=112.5
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 78998067987899999799999999828747999977789189998067898599999579999999848978999989
Q 000251 262 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 341 (1784)
Q Consensus 262 ~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl 341 (1784)
..++|+||.+.|+|++|+|||++||+|+.|++|+|||. ++++++++.+|.+.|++++|+|++++||+++.|++|+|||+
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~ 86 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 86 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 94398789985799999899899999938998999979-99789999689899899999899999999969897999989
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCC---------CCCC--------
Q ss_conf 99970588417788559999527999507999992899099993678866552513799---------9732--------
Q 000251 342 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP---------SDAV-------- 404 (1784)
Q Consensus 342 ~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~---------~~~~-------- 404 (1784)
+++++..+.+|...|.+++|+|++. +|++++.|+.+++|+............... ....
T Consensus 87 -~~~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (577)
T 2ymu_A 87 -NGQLLQTLTGHSSSVRGVAFSPDGQ---TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 162 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred -CCCEEEEEECCCCCEEEEEECCCCC---EEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCCC
T ss_conf -9978999978999889999989999---899980798335202355200110477774355542037763200255531
Q ss_pred ---CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCC
Q ss_conf ---48887888889999976389998779988999408950999738999998999998512330378888007998267
Q 000251 405 ---AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 481 (1784)
Q Consensus 405 ---~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspd 481 (1784)
.............+...+.+++|+|++.+|++++.|+.|++|+.. ...+..+.+|...|.+++|+|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~----------~~~~~~~~~~~~~v~~~~~s~d 232 (577)
T 2ymu_A 163 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----------GQLLQTLTGHSSSVRGVAFSPD 232 (577)
T ss_dssp EEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----------SCEEEEEECCSSCEEEEEECTT
T ss_pred EECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC----------CCEEEEEECCCCCEEEEEECCC
T ss_conf 000000000000026877635665416997789998599989999499----------9689999468898899999799
Q ss_pred C
Q ss_conf 6
Q 000251 482 A 482 (1784)
Q Consensus 482 g 482 (1784)
+
T Consensus 233 g 233 (577)
T 2ymu_A 233 G 233 (577)
T ss_dssp S
T ss_pred C
T ss_conf 9
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=424.58 Aligned_cols=494 Identities=21% Similarity=0.319 Sum_probs=337.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEE
Q ss_conf 87554430023311137852102578503222023446653223421789980679878999997999999998287479
Q 000251 215 PHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLV 294 (1784)
Q Consensus 215 p~~~~~~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~~~~~~~~~~~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtI 294 (1784)
..+|.+.|.++.+.+.|..+ ++++....+..|. .+.+++++|.||...|++++|+|+|++||+++.|++|
T Consensus 12 L~GH~~~V~~~a~spdg~~l---------as~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i 81 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTI---------ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 81 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCE---------EEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ECCCCCCEEEEEECCCCCEE---------EEEECCCEEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEE
T ss_conf 87899857999998998999---------9993899899997-9997899996898998999998999999999698979
Q ss_pred EEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC-----------------------------
Q ss_conf 999777891899980678985999995799999998489789999899997-----------------------------
Q 000251 295 KIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL----------------------------- 345 (1784)
Q Consensus 295 kIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk----------------------------- 345 (1784)
+|||+ +++++.++.+|...|.+++|+|++++|++++.|+.+++|+.....
T Consensus 82 ~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (577)
T 2ymu_A 82 KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160 (577)
T ss_dssp EEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCC
T ss_conf 99989-99789999789998899999899998999807983352023552001104777743555420377632002555
Q ss_pred -----------EEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf -----------058841778855999952799950799999289909999367886655251379997324888788888
Q 000251 346 -----------PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 414 (1784)
Q Consensus 346 -----------~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s 414 (1784)
.......|...|.++.|+|++. +|++++.||.|++|+.. ++....+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~v~~w~~~-~~~~~~~------------------- 217 (577)
T 2ymu_A 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ---TIASASDDKTVKLWNRN-GQLLQTL------------------- 217 (577)
T ss_dssp SEEEEECTTSCEEEEEECCSSCEEEEEECTTSS---CEEEEETTSEEEEECTT-SCEEEEE-------------------
T ss_pred CCEECCCCCEEEEEECCCCCCCEEEEEECCCCC---EEEEECCCCEEEEEECC-CCEEEEE-------------------
T ss_conf 310000000000000268776356654169977---89998599989999499-9689999-------------------
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCC----C
Q ss_conf 999997638999877998899940895099973899999899999851233037888800799826762333334----5
Q 000251 415 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL----A 490 (1784)
Q Consensus 415 ~~~h~~~V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~----~ 490 (1784)
..|...|.+++|+|++.+|++++.|+.|++|+.. ...+..+.+|...|.+++|+|++....... .
T Consensus 218 -~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~----------~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 218 -TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286 (577)
T ss_dssp -ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT----------SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred -ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC----------CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEE
T ss_conf -4688988999997999999999189989999599----------97999980688987999996899999999599979
Q ss_pred CCCCCCC---------CCCCC--CCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7888888---------87555--655668708998079809999278888885322211222456999999999999998
Q 000251 491 DSSKEDS---------TPKFK--NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 559 (1784)
Q Consensus 491 ~s~~~~~---------~~~~~--~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~ 559 (1784)
..+.... ..... ........+++++.|+.|++|+... ..
T Consensus 287 ~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~------------------------------~~ 336 (577)
T 2ymu_A 287 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG------------------------------QH 336 (577)
T ss_dssp EEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS------------------------------CE
T ss_pred EEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC------------------------------CE
T ss_conf 999489958999706889769999999999999996999599996999------------------------------72
Q ss_pred CEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 30005899971299986899789999539739999889994599980699984999990599949999958992999968
Q 000251 560 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 639 (1784)
Q Consensus 560 ~~~l~~h~~~VtsIafSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl 639 (1784)
...+..|...+.+++|+|++++|++++.|+.|++|+. +++++..+.+|...|.+++|+| ++++|++++.|+.|++|+.
T Consensus 337 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEEC
T ss_conf 5787478897799999899999999969998999908-9978998527889748999989-9999999949998999969
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCC------CCCCCEEECCCCCCEEECCCCCEEE
Q ss_conf 9992289986068535799993799999999589709999989983113------5533113317985068814786231
Q 000251 640 WEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK------DAKYDQFFLGDYRPLVQDTYGNVLD 713 (1784)
Q Consensus 640 ~tg~~i~tl~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~------~~~~~~~fs~D~r~Li~d~~g~Vld 713 (1784)
+++++..+..|...|.+++|+||+++|++++.|+.|.+|+.. ++.+. .......|++|++.|+.......+.
T Consensus 415 -~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~ 492 (577)
T 2ymu_A 415 -NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 492 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred -CCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf -997898962889975799998999999999399989999799-988999727899778999969999999991989799
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCCC--CCC
Q ss_conf 221114676887875667888889995100101001662206987999849996189988726840179866223--787
Q 000251 714 QETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMI--DPL 791 (1784)
Q Consensus 714 ~~tql~p~l~~i~~~L~D~~~~p~p~~~q~l~~~r~~gv~~iAfSPDG~~LAvg~d~s~~~~i~l~~l~~~~~li--~pl 791 (1784)
+|+..+ .....+.++...+.+++|||||++||++ +.++.+++|+. +++.+. ...
T Consensus 493 ---------------iw~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~---~~dg~v~lwd~-~~~~~~~~~~h 548 (577)
T 2ymu_A 493 ---------------LWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWNR-NGQLLQTLTGH 548 (577)
T ss_dssp ---------------EEETTS-----CEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSEEEEECT-TSCEEEEEECC
T ss_pred ---------------EECCCC-----CEEEEEECCCCCEEEEEECCCCCEEEEE---ECCCEEEEEEC-CCCEEEEECCC
T ss_conf ---------------993999-----7899986799998999991899999999---89699999969-99789897188
Q ss_pred CCCCCEEEECCCCCCCCCCC
Q ss_conf 65410135479988435799
Q 000251 792 PEFIDVMDWEPENEVQSDDN 811 (1784)
Q Consensus 792 p~~i~~iafsPDg~~ls~~~ 811 (1784)
.+.|..++|+||+..+....
T Consensus 549 ~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 549 SSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEE
T ss_conf 88878999968999999990
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=423.21 Aligned_cols=369 Identities=18% Similarity=0.289 Sum_probs=243.8
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 78998067987899999799999999828747999977789189998067898599999579999999848978999989
Q 000251 262 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 341 (1784)
Q Consensus 262 ~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl 341 (1784)
....+.+|.+.|++++|+|+|++||+|+.||+|+||++.++..+.++.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 22787166664899998799998999948894999998999788876067777899999269998999818995999877
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99970588417788559999527999507999992899099993678866552513799973248887888889999976
Q 000251 342 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 421 (1784)
Q Consensus 342 ~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~ 421 (1784)
.+++.+..+.+|...|.+++|+|++... ++++++.||.|++||+.++.....+. .|...
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~~--------------------~h~~~ 745 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHL-LLATGSNDFFLKLWDLNQKECRNTMF--------------------GHTNS 745 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCC-EEEEEETTSCEEEEETTSSSEEEEEC--------------------CCSSC
T ss_pred CCCCEEEEECCCCCCEEEEEEECCCCCE-EEEEEECCCEEEEEECCCCCHHHEEC--------------------CCCCC
T ss_conf 9993689995899737999984089965-99998089709999899963422012--------------------77797
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCCCCC----CCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 389998779988999408950999738999998999998----5123303788880079982676233333457888888
Q 000251 422 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN----HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 497 (1784)
Q Consensus 422 V~sIafSPdG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~----~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~ 497 (1784)
|.+++|+|++.+|++++.||.|++|++.++......... ............+.+++|+|++
T Consensus 746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--------------- 810 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG--------------- 810 (1249)
T ss_dssp EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS---------------
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCC---------------
T ss_conf 88999925999899997898599996888865530202321024677644565017999997899---------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECC
Q ss_conf 87555655668708998079809999278888885322211222456999999999999998300058999712999868
Q 000251 498 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 577 (1784)
Q Consensus 498 ~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSP 577 (1784)
..+++++ ++.+.+|++.++.. .......|...|.+++|+|
T Consensus 811 -----------~~l~~~~-~~~v~~~d~~~~~~----------------------------~~~~~~~~~~~v~~~~~sp 850 (1249)
T 3sfz_A 811 -----------DKIIVAA-KNKVLLFDIHTSGL----------------------------LAEIHTGHHSTIQYCDFSP 850 (1249)
T ss_dssp -----------SEEEEEE-TTEEEEEETTTCCE----------------------------EEEEECSSSSCCCEEEECS
T ss_pred -----------CEEEEEC-CCCEEEEEECCCCC----------------------------EEEECCCCCCCEEEEEECC
T ss_conf -----------8899975-89599999568972----------------------------3577478777607999827
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-------------
Q ss_conf 9978999953973999988999459998069998499999059994999995899299996899922-------------
Q 000251 578 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP------------- 644 (1784)
Q Consensus 578 DG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~------------- 644 (1784)
++.++++++.|+.|++|++.++..+..+.+|...|++++|+| ++.++++++.||.|++|++.++..
T Consensus 851 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 929 (1249)
T 3sfz_A 851 YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929 (1249)
T ss_dssp STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEE
T ss_conf 888899994798699998678956532278766568999989-9998999958972898874665201021133103689
Q ss_pred ----------------EEEE--------ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCC------CCCCE
Q ss_conf ----------------8998--------60685357999937999999995897099999899831135------53311
Q 000251 645 ----------------IRIY--------EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKD------AKYDQ 694 (1784)
Q Consensus 645 ----------------i~tl--------~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~~------~~~~~ 694 (1784)
+..+ ......+.+++|+|+|.++++++.+|.|.+|++.+++.... .....
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l 1009 (1249)
T 3sfz_A 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1009 (1249)
T ss_dssp EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCE
T ss_pred ECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEE
T ss_conf 75998689981377624898447650897256727899995899779998699988999757872344303677716899
Q ss_pred EECCCCCCEEECC
Q ss_conf 3317985068814
Q 000251 695 FFLGDYRPLVQDT 707 (1784)
Q Consensus 695 ~fs~D~r~Li~d~ 707 (1784)
.|+++++.|+...
T Consensus 1010 ~~s~dg~~l~s~~ 1022 (1249)
T 3sfz_A 1010 QFTADGKTLISSS 1022 (1249)
T ss_dssp EECSSSSCEEEEC
T ss_pred EECCCCCEEEEEC
T ss_conf 9989999899986
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=421.79 Aligned_cols=462 Identities=12% Similarity=0.085 Sum_probs=250.5
Q ss_pred CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC--
Q ss_conf 679878999997999999998287479999777891899980678985999995799999998489789999899997--
Q 000251 268 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-- 345 (1784)
Q Consensus 268 GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk-- 345 (1784)
.+++.+.+++|+|+|++||+++ ++.|+||++.++.....+.+|...|++++|+|+|++||+|+.|++|+|||+.++.
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE
T ss_conf 4068236976679999799679-997999457872427376589986599999999968999948997899489898415
Q ss_pred EEEEECCCCCCEEEEEECCCCCCCEEEEEEECC----CCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 058841778855999952799950799999289----9099993678866552513799973248887888889999976
Q 000251 346 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD----GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 421 (1784)
Q Consensus 346 ~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~D----GtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~ 421 (1784)
....+.+|.+.|.+++|+|++. +|++++.+ +.|++||. +..... ..+|...
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~---~l~~~~~~~~~~~~v~~wd~--~~~~~~--------------------l~gh~~~ 149 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESK---RIAAVGEGRERFGHVFLFDT--GTSNGN--------------------LTGQARA 149 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSC---EEEEEECCSSCSEEEEETTT--CCBCBC--------------------CCCCSSC
T ss_pred EEEEECCCCCCEEEEEECCCCC---EEEEEECCCCCEEEEEEEEC--CCCCCE--------------------ECCCCCC
T ss_conf 6676225578448999899999---79999899773669999638--997632--------------------5478898
Q ss_pred EEEEEECCCCC-EEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 38999877998-89994089509997389999989999985123303788880079982676233333457888888875
Q 000251 422 IFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 500 (1784)
Q Consensus 422 V~sIafSPdG~-~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafspdglas~~~~~~s~~~~~~~~ 500 (1784)
|.+++|+|++. .|++++.|+.|++|+..+ .+....+.+|...|.+++|+|++
T Consensus 150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~---------~~~~~~l~~H~~~V~~v~fspdg------------------ 202 (611)
T 1nr0_A 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPP---------FKFKSTFGEHTKFVHSVRYNPDG------------------ 202 (611)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTT---------BEEEEEECCCSSCEEEEEECTTS------------------
T ss_pred CEEEEECCCCCEEEEEEECCCEEEEEECCC---------CEEEEEECCCCCCEEEEEECCCC------------------
T ss_conf 369998899982999992898099997999---------75766520025716999997999------------------
Q ss_pred CCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCC
Q ss_conf 55655668708998079809999278888885322211222456999999999999998300058999712999868997
Q 000251 501 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 580 (1784)
Q Consensus 501 ~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~ 580 (1784)
..|++++.|++|++|++.+++...... ........|...|.+++|+|+++
T Consensus 203 --------~~las~s~D~~i~lwd~~~g~~~~~~~----------------------~~~~~~~~h~~~V~~v~~spdg~ 252 (611)
T 1nr0_A 203 --------SLFASTGGDGTIVLYNGVDGTKTGVFE----------------------DDSLKNVAHSGSVFGLTWSPDGT 252 (611)
T ss_dssp --------SEEEEEETTSCEEEEETTTCCEEEECB----------------------CTTSSSCSSSSCEEEEEECTTSS
T ss_pred --------CEEEEEECCCCEEEEECCCCCEEEEEC----------------------CCCCCCCCCCCCEEEEEECCCCC
T ss_conf --------989999899919998899982866513----------------------66432356678789999979999
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECC---CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 8999953973999988999459998069---9984999990599949999958992999968999228998606853579
Q 000251 581 FVLAAIMDCRICVWNAADGSLVHSLTGH---TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD 657 (1784)
Q Consensus 581 ~LaSgs~DGsIrIWDl~tgkli~~L~gH---~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~Its 657 (1784)
+|++++.|+.|++||+.+++++..+..+ ...+..+.| ++..+++++.|+.|++|+...+.+...+.+|...|.+
T Consensus 253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~ 329 (611)
T 1nr0_A 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW---TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA 329 (611)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE---CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE---CCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEE
T ss_conf 9999908980999968887013440478876640689997---3887999958996899968899744698378888899
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCCCCCC-------CCCEEECCCCCCEEECCCCC--EEECCCCCCCCCC-----
Q ss_conf 999379999999958970999998998311355-------33113317985068814786--2312211146768-----
Q 000251 658 GKFSPDGASIILSDDVGQLYILNTGQGESQKDA-------KYDQFFLGDYRPLVQDTYGN--VLDQETQLAPHRR----- 723 (1784)
Q Consensus 658 iafSPDGk~LAsgs~DG~I~IWdi~sGe~~~~~-------~~~~~fs~D~r~Li~d~~g~--Vld~~tql~p~l~----- 723 (1784)
++|+|||++|++++.||.|++|++.+++..... .....|++++..+.....+. +++..........
T Consensus 330 l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~ 409 (611)
T 1nr0_A 330 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANK 409 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEE
T ss_pred EEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEE
T ss_conf 99918999899995898499997887925632166776507899987899699998489668954688543565212001
Q ss_pred -CCCCCCCCC--CC-----------CCC-CCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCC-
Q ss_conf -878756678--88-----------889-99510010100166220698799984999618998872684017986622-
Q 000251 724 -NLQDPLCDS--AM-----------IPY-PEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM- 787 (1784)
Q Consensus 724 -~i~~~L~D~--~~-----------~p~-p~~~q~l~~~r~~gv~~iAfSPDG~~LAvg~d~s~~~~i~l~~l~~~~~l- 787 (1784)
...+..+.. ++ ..+ ......+ .+...+.+++|||||++||++ +.+..+++|++......
T Consensus 410 ~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~--~~~~~v~~va~spdg~~lasg---s~D~~v~lwd~~~~~~~~ 484 (611)
T 1nr0_A 410 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV--PISYNSSCVALSNDKQFVAVG---GQDSKVHVYKLSGASVSE 484 (611)
T ss_dssp CSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE--ECSSCEEEEEECTTSCEEEEE---ETTSEEEEEEEETTEEEE
T ss_pred CCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEE--ECCCCCEEEEEECCCCEEEEE---CCCCEEEEEECCCCCEEE
T ss_conf 489970799807996999996763999848943464--068895499992899899996---899739999945992224
Q ss_pred --CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf --378765410135479988435799996555435
Q 000251 788 --IDPLPEFIDVMDWEPENEVQSDDNDSEYNVAEE 820 (1784)
Q Consensus 788 --i~plp~~i~~iafsPDg~~ls~~~~~~~~~~e~ 820 (1784)
....+..+.+++|+||+..++....+..+..++
T Consensus 485 ~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 485 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf 10157788607999989999899994899899988
No 7
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=395.50 Aligned_cols=432 Identities=17% Similarity=0.215 Sum_probs=347.8
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 21789980679878999997999999998287479999777891899980678985999995799999998489789999
Q 000251 260 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 339 (1784)
Q Consensus 260 ~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIW 339 (1784)
++..++|.+|.+.|+|++|+|+|.+||+|+.||.|+|||+.++..+..+.+|...|++++|+|++++|++++.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred CCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEE
T ss_conf 65000450589856899988999989999479989999899991677873389968899996899989999289949999
Q ss_pred ECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCC-CCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999970588417788559999527999507999992899099993678866-552513799973248887888889999
Q 000251 340 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQ 418 (1784)
Q Consensus 340 Dl~tgk~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~-l~~i~l~~~~~~~~g~~~~~~~s~~~h 418 (1784)
++.+++.+..+.+|.+.|++++|+|++. +|++++.||.|++|++.++.. ...+ ..|
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~--------------------~~~ 139 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---YVLSGSDDLTVKLWNWENNWALEQTF--------------------EGH 139 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS---EEEEEETTSEEEEEEGGGTSEEEEEE--------------------ECC
T ss_pred ECCCCCEEEEEECCCCCEEEEEEECCCC---EEEEECCCCEEEEEECCCCCEEEEEE--------------------CCC
T ss_conf 8999958799816899789999958999---89999289989999899995487998--------------------379
Q ss_pred CCCEEEEEECC-CCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEC-CCCCCCEEEEECC--CCCCCCCCCCCCCC
Q ss_conf 97638999877-99889994089509997389999989999985123303-7888800799826--76233333457888
Q 000251 419 SHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS-GHENDVNYVQFSG--CAVASRFSLADSSK 494 (1784)
Q Consensus 419 ~~~V~sIafSP-dG~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~-gH~~~V~sIafsp--dglas~~~~~~s~~ 494 (1784)
...|.+++|+| ++..|++++.||.|++|++..+. ....+. .+...+.+++|+| ++
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~------------ 198 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST---------PNFTLTTGQERGVNYVDYYPLPDK------------ 198 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS---------CSEEEECCCTTCCCEEEECCSTTC------------
T ss_pred CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCC---------CEEEEECCCCCCEEEEEEEECCCC------------
T ss_conf 98688999976999999999488949999899996---------106983588897799999977999------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEE
Q ss_conf 88887555655668708998079809999278888885322211222456999999999999998300058999712999
Q 000251 495 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 574 (1784)
Q Consensus 495 ~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIa 574 (1784)
..+++++.||.|++|++.++ .....+..|...|.+++
T Consensus 199 --------------~~l~~~~~dg~i~~~d~~~~-----------------------------~~~~~~~~~~~~v~~~~ 235 (814)
T 3mkq_A 199 --------------PYMITASDDLTIKIWDYQTK-----------------------------SCVATLEGHMSNVSFAV 235 (814)
T ss_dssp --------------CEEEEECTTSEEEEEETTTT-----------------------------EEEEEEECCSSCEEEEE
T ss_pred --------------CEEEEEECCCEEEEEECCCC-----------------------------CEEEEECCCCCCEEEEE
T ss_conf --------------89999938997999999999-----------------------------18899847888878999
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE------
Q ss_conf 86899789999539739999889994599980699984999990599949999958992999968999228998------
Q 000251 575 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY------ 648 (1784)
Q Consensus 575 fSPDG~~LaSgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl------ 648 (1784)
|+|++.+|++++.||.|++|++.+++.+..+..|...+.+++|+|++..++++++.|+.+.+|++..+.....+
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKL 315 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEE
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCEEEEECCCCCCEEEECCCCCE
T ss_conf 85999999999089969999899994777840688867999992499950999990798799976799741677799878
Q ss_pred -------------------------------------ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCC-CC
Q ss_conf -------------------------------------6068535799993799999999589709999989983113-55
Q 000251 649 -------------------------------------EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK-DA 690 (1784)
Q Consensus 649 -------------------------------------~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~-~~ 690 (1784)
..+...+.+++|+|+|++|++++ +|.+.+|++....... ..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~~~ 394 (814)
T 3mkq_A 316 VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAFGK 394 (814)
T ss_dssp EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEC-CCEEEEEECCCCCCCCCCC
T ss_conf 997763664112466530465555567620146511788765774068999999899942-9889999874544567995
Q ss_pred CCCEEECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCC---CEEEEE
Q ss_conf 33113317985068814786231221114676887875667888889995100101001662206987999---849996
Q 000251 691 KYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSS---LKLAVG 767 (1784)
Q Consensus 691 ~~~~~fs~D~r~Li~d~~g~Vld~~tql~p~l~~i~~~L~D~~~~p~p~~~q~l~~~r~~gv~~iAfSPDG---~~LAvg 767 (1784)
.....|++|++.++.......+.. ++ .+.++...+..++|+||| .+|+++
T Consensus 395 i~~~~~spdg~~la~~~~~g~v~l---------------~~------------~~~~~~~~v~~~~~s~dg~~~~~l~~~ 447 (814)
T 3mkq_A 395 CQDFVWGPDSNSYALIDETGQIKY---------------YK------------NFKEVTSWSVPMHSAIDRLFSGALLGV 447 (814)
T ss_dssp CSEEEECTTSSCEEEECTTCCEEE---------------EE------------TTEECTTCCCCCSSCCCEEECSSSEEE
T ss_pred EEEEEEECCCCEEEEEECCCCEEE---------------EE------------CCCCCCCEEECCCCCCCCEECCEEEEE
T ss_conf 479999479985999968983999---------------97------------777752439737867552365469999
Q ss_pred ECCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 1899887268401798662237876541013547998843579
Q 000251 768 PDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDD 810 (1784)
Q Consensus 768 ~d~s~~~~i~l~~l~~~~~li~plp~~i~~iafsPDg~~ls~~ 810 (1784)
+.+..+.+|++.++..+ ..+......++|+||++.++..
T Consensus 448 ---~~d~~v~~~d~~~~~~~-~~~~~~~~~v~~s~dg~~la~~ 486 (814)
T 3mkq_A 448 ---KSDGFVYFFDWDNGTLV-RRIDVNAKDVIWSDNGELVMIV 486 (814)
T ss_dssp ---EETTEEEEECTTTCCEE-EEESSCEEEEEECTTSSEEEEE
T ss_pred ---ECCCEEEEEECCCCCEE-EEEECCCCEEEECCCCCEEEEE
T ss_conf ---66998999998769599-9973588879996999999999
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=383.24 Aligned_cols=415 Identities=11% Similarity=0.081 Sum_probs=212.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEE
Q ss_conf 55443002331113785210257850322202344665322342178998067987899999799999999828747999
Q 000251 217 MYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 296 (1784)
Q Consensus 217 ~~~~~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~~~~~~~~~~~k~i~tL~GH~~~VtsIaFSPDG~~LATGS~DGtIkI 296 (1784)
+|...|..+.+.+.|. .+++++.+..+..|.....+.+..+ .|...|.+++|+| |++|++++.|++|+|
T Consensus 15 gh~~~V~~lafspdg~---------~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQN---------LLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYV 83 (902)
T ss_dssp ECSSCEEEEEEETTTT---------EEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred CCCCCCEEEEECCCCC---------EEEEEECCCEEEEEECCCCEEEEEC-CCCCCEEEEEECC-CCEEEEEECCCEEEE
T ss_conf 8899848999979999---------8999929798999968994799986-8999779999908-988999989595999
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE-----------EEECCCCCCEEEEEECCC
Q ss_conf 977789189998067898599999579999999848978999989999705-----------884177885599995279
Q 000251 297 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI-----------SVLRGHTAAVTAIAFSPR 365 (1784)
Q Consensus 297 WDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk~i-----------~~l~gH~~~VtsIafSPd 365 (1784)
||+.+++++.++. |...|++++|+|++.+|++|+.||.|++||+.++... ..+.+|.+.|++++|+|+
T Consensus 84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 84 LSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred EECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 9899996899974-899879999879999899994999299999999962650304321000254457897389997669
Q ss_pred CCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 99507999992899099993678866552513799973248887888889999976389998779988999408950999
Q 000251 366 PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 445 (1784)
Q Consensus 366 g~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sIafSPdG~~LaSGs~DGtIrI 445 (1784)
+. ..|++++.||.| +||++++.....+....+.....+... ......|...|++++|+|+|.+|++++.|+.|++
T Consensus 163 ~~--~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DI--GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS--EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EE--EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC--CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CC--CEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCC--CCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 99--989999189849-998778965799833557767776544--3323456777689998599999999989993999
Q ss_pred ECCCCCCCCCCCCCCCCEEEEC-------------CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 7389999989999985123303-------------788880079982676233333457888888875556556687089
Q 000251 446 WNACKPNTDDSDQPNHEIDVLS-------------GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 512 (1784)
Q Consensus 446 WDl~t~~~~~s~~~~~~i~~l~-------------gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~~~~Lv 512 (1784)
||+.++..... ..+.... .|...|.+++|++..... ....++
T Consensus 238 Wd~~~g~~~~~----r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd---------------------~~~ll~ 292 (902)
T 2oaj_A 238 WDANSGHMIMA----RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE---------------------YTSLLI 292 (902)
T ss_dssp EETTTCCEEEE----ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT---------------------EEEEEE
T ss_pred EECCCCCEEEE----EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC---------------------CCEEEE
T ss_conf 98789968888----85012345787776788885556774579997349998---------------------878999
Q ss_pred EEECC-----CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC-CCCCCCEEEEEECC---------
Q ss_conf 98079-----8099992788888853222112224569999999999999983000-58999712999868---------
Q 000251 513 TCSRD-----GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI-LPTPRGVNMIVWSL--------- 577 (1784)
Q Consensus 513 SgS~D-----GtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l-~~h~~~VtsIafSP--------- 577 (1784)
+|+.+ ..+.+|++...... ....|.....+ . . .......+ ..+...|..+++.+
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~-~~~s~~~~~~~-~-------~--~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~ 361 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRY-SITSYEGMKNY-Y-------A--NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC 361 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCG-GGCCHHHHHHH-H-------H--SCSEEEEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred ECCCCCCCCCCEEEEEECCCCCCC-CCCCHHHHHHH-H-------C--CCCCEEEEECCCCCCEEEEEECCCCCCCCCCC
T ss_conf 688777788852899954789875-55425565466-4-------1--74522787418999547999977889886778
Q ss_pred -CCCEEEEEECCCEEEEEECCCCCEEEE-----------------------------------------EECCCCCEEEE
Q ss_conf -997899995397399998899945999-----------------------------------------80699984999
Q 000251 578 -DNRFVLAAIMDCRICVWNAADGSLVHS-----------------------------------------LTGHTESTYVL 615 (1784)
Q Consensus 578 -DG~~LaSgs~DGsIrIWDl~tgkli~~-----------------------------------------L~gH~~~VtsI 615 (1784)
+...+++++.|+.|++|++.++..... +.+|...+..+
T Consensus 362 ~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv 441 (902)
T 2oaj_A 362 HNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQK 441 (902)
T ss_dssp BSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCC
T ss_pred CCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 78506999917984899978999855655568985223589724899997499999888860469997545785778753
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEE--EEEE---------CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 990599949999958992999968999228--9986---------06853579999379999999958970999998998
Q 000251 616 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPI--RIYE---------ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 684 (1784)
Q Consensus 616 afSPdd~~lLaSgs~DG~IrIWDl~tg~~i--~tl~---------~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sG 684 (1784)
+|+| ++++|++|+.|++|++||+.++... ..+. +|...|.+++|+|||++||+++.||.|++|++.++
T Consensus 442 ~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 442 LPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred CCCC-CCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCC
T ss_conf 3366-675899965898389997877645677367750154137788876469996389996999945857999992486
Q ss_pred C
Q ss_conf 3
Q 000251 685 E 685 (1784)
Q Consensus 685 e 685 (1784)
+
T Consensus 521 ~ 521 (902)
T 2oaj_A 521 Q 521 (902)
T ss_dssp C
T ss_pred C
T ss_conf 5
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=380.40 Aligned_cols=490 Identities=13% Similarity=0.174 Sum_probs=362.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC----EEEEEECCCCCC-EEEEEECC--CCCEEEE
Q ss_conf 8755443002331113785210257850322202344665322342----178998067987-89999979--9999999
Q 000251 215 PHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKM----QNIKRVRGHRNA-VYCAIFDR--SGRYVIT 287 (1784)
Q Consensus 215 p~~~~~~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~~~~~~~~~~~----k~i~tL~GH~~~-VtsIaFSP--DG~~LAT 287 (1784)
|..|...+..+.+.+.|..++. ++ ......|.+.+. +.+..+.+|... |++++|+| ++++||+
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~---------~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAY---------PC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEE---------EE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEE---------EC-CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEE
T ss_conf 8776585368998899997999---------35-9849999777887765143188057884499999796789988999
Q ss_pred ECCCCEEEEEECCCC--------EEEEEEECCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCCEEEEECCCCC
Q ss_conf 828747999977789--------1899980678985999995799999998489----7899998999970588417788
Q 000251 288 GSDDRLVKIWSMETA--------YCLASCRGHEGDITDLAVSSNNALVASASND----CIIRVWRLPDGLPISVLRGHTA 355 (1784)
Q Consensus 288 GS~DGtIkIWDi~tg--------~~l~tL~gH~~~VtsIafSPDg~lLASGS~D----GtIrIWDl~tgk~i~~l~gH~~ 355 (1784)
|+.||.|+||++.++ ..+..+..|...|.+++|+|++++|++++.+ +.|.+|+ .+..+..+.+|..
T Consensus 84 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~ 161 (615)
T 1pgu_A 84 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQ 161 (615)
T ss_dssp EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSS
T ss_pred ECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CCCCCEEEECCCC
T ss_conf 64898799976888765544554200011125663799999079998999316877755799997--8981031306774
Q ss_pred CEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC---CEEEEEECCC-C
Q ss_conf 55999952799950799999289909999367886655251379997324888788888999997---6389998779-9
Q 000251 356 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH---QIFCCAFNAN-G 431 (1784)
Q Consensus 356 ~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~---~V~sIafSPd-G 431 (1784)
.|.+++|+|++. ..|++++.|+.|++||+.+++....+. .|.. .|.+++|+|+ +
T Consensus 162 ~v~~~~~~~~~~--~~l~~~~~d~~v~vwd~~~~~~~~~~~--------------------~~~~~~~~v~~~~~~~~~~ 219 (615)
T 1pgu_A 162 RINACHLKQSRP--MRSMTVGDDGSVVFYQGPPFKFSASDR--------------------THHKQGSFVRDVEFSPDSG 219 (615)
T ss_dssp CEEEEEECSSSS--CEEEEEETTTEEEEEETTTBEEEEEEC--------------------SSSCTTCCEEEEEECSTTC
T ss_pred CEEEEEECCCCC--CEEEEEECCCCEEEEECCCCCEEEEEC--------------------CCCCCCCEEEEEEECCCCC
T ss_conf 388999887899--689999579959999699961013202--------------------5677774289999789778
Q ss_pred CEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEE-C---CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999408950999738999998999998512330-3---7888800799826762333334578888888755565566
Q 000251 432 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-S---GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 507 (1784)
Q Consensus 432 ~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l-~---gH~~~V~sIafspdglas~~~~~~s~~~~~~~~~~~~~~~ 507 (1784)
.+|++++.|+.|++|++.+ ...+..+ . .|...|.++.|+ ++
T Consensus 220 ~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~v~~~~~~-~~------------------------- 264 (615)
T 1pgu_A 220 EFVITVGSDRKISCFDGKS---------GEFLKYIEDDQEPVQGGIFALSWL-DS------------------------- 264 (615)
T ss_dssp CEEEEEETTCCEEEEETTT---------CCEEEECCBTTBCCCSCEEEEEES-SS-------------------------
T ss_pred CEEEEEECCCEEEEEECCC---------CCEEEEECCCCCCCCCCEEEEEEC-CC-------------------------
T ss_conf 8899986898089998999---------978589525444567755899981-89-------------------------
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC----CCCCEEEEEECCCCCEEE
Q ss_conf 8708998079809999278888885322211222456999999999999998300058----999712999868997899
Q 000251 508 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP----TPRGVNMIVWSLDNRFVL 583 (1784)
Q Consensus 508 ~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~----h~~~VtsIafSPDG~~La 583 (1784)
..|++++.||.|++||+.+++.. ..+.. ....+.++.|+ ++.+++
T Consensus 265 -~~l~~~~~d~~i~~wd~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~-~~~~l~ 313 (615)
T 1pgu_A 265 -QKFATVGADATIRVWDVTTSKCV-----------------------------QKWTLDKQQLGNQQVGVVAT-GNGRII 313 (615)
T ss_dssp -SEEEEEETTSEEEEEETTTTEEE-----------------------------EEEECCTTCGGGCEEEEEEE-ETTEEE
T ss_pred -CEEEEECCCCCEEEEECCCCCEE-----------------------------EEECCCCCCCCCCEEEEEEC-CCCEEE
T ss_conf -97999848994899978889278-----------------------------78847877545714699918-997699
Q ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 99539739999889994599980699984999990599949999958992999968999228998606853579999379
Q 000251 584 AAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 663 (1784)
Q Consensus 584 Sgs~DGsIrIWDl~tgkli~~L~gH~~~VtsIafSPdd~~lLaSgs~DG~IrIWDl~tg~~i~tl~~h~~~ItsiafSPD 663 (1784)
+++.|+.|++|++.+++++..+.+|...|++++| | + +++++.||.|++|++. ++. ..|...|.+++| ++
T Consensus 314 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~-~---l~~~~~dg~i~~w~~~---~~~--~~~~~~v~~~~~-~~ 382 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N-P---LISGSYDGRIMEWSSS---SMH--QDHSNLIVSLDN-SK 382 (615)
T ss_dssp EEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T-T---TEEEETTSCEEETTTT---EEE--CCCCSCEEEEEC-CS
T ss_pred EEECCCCEEEEECCCCCEEEEEECCCCCEEEEEE-C-C---CEEECCCCEEEEEECH---HHC--CCCCCCEEEEEE-CC
T ss_conf 9978997899988899288999477787899995-6-7---4898799959998752---415--755685179997-89
Q ss_pred CCEEEEEECCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEECCCCCE--EECCCCCC----CCC---------------
Q ss_conf 999999958970999998998311355331133179850688147862--31221114----676---------------
Q 000251 664 GASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNV--LDQETQLA----PHR--------------- 722 (1784)
Q Consensus 664 Gk~LAsgs~DG~I~IWdi~sGe~~~~~~~~~~fs~D~r~Li~d~~g~V--ld~~tql~----p~l--------------- 722 (1784)
+.+|++++.||.|.+|++..++... .+....|++++..++....+.+ ++...... .+.
T Consensus 383 ~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 461 (615)
T 1pgu_A 383 AQEYSSISWDDTLKVNGITKHEFGS-QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV 461 (615)
T ss_dssp TTCCEEEETTTEEEETTEEEEECSS-CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred CCEEEEEECCCCEEEEECCCCCCCC-CCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEECCCEEEE
T ss_conf 8679999589979998866676367-846999828987899967982699944678665551567872077883888999
Q ss_pred --C-CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEECCCCCCCCCC--C-CCCCCC
Q ss_conf --8-878756678888899951001010016622069879998499961899887268401798662237--8-765410
Q 000251 723 --R-NLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMID--P-LPEFID 796 (1784)
Q Consensus 723 --~-~i~~~L~D~~~~p~p~~~q~l~~~r~~gv~~iAfSPDG~~LAvg~d~s~~~~i~l~~l~~~~~li~--p-lp~~i~ 796 (1784)
. .....+++....... ...+.++...+.+++|+|+|++||++ +.+..+.+|++.++..+.. . ....+.
T Consensus 462 ~~~~d~~i~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~---~~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 535 (615)
T 1pgu_A 462 GLEEGNTIQVFKLSDLEVS---FDLKTPLRAKPSYISISPSETYIAAG---DVMGKILLYDLQSREVKTSRWAFRTSKIN 535 (615)
T ss_dssp EETTTSCEEEEETTEEEEE---EECSSCCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred EECCCCEEEEEECCCCCCC---CCCCCCCCCCEEEEEECCCCCEEEEC---CCCCEEEEEECCCCCCEEEEECCCCCCEE
T ss_conf 6568986999988885435---33367765750799998999989981---79985998657777624676047887146
Q ss_pred EEEECC----------CCCCCCCCCCCCCCCCCCCC
Q ss_conf 135479----------98843579999655543577
Q 000251 797 VMDWEP----------ENEVQSDDNDSEYNVAEEYS 822 (1784)
Q Consensus 797 ~iafsP----------Dg~~ls~~~~~~~~~~e~~~ 822 (1784)
.++|+| ++..++....++.+-.++..
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECC
T ss_conf 999768323453324688889998179719999778
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=379.74 Aligned_cols=490 Identities=10% Similarity=0.067 Sum_probs=336.6
Q ss_pred ECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 80679878999997999999998287479999777891899980678985999995799999998489789999899997
Q 000251 266 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 345 (1784)
Q Consensus 266 L~GH~~~VtsIaFSPDG~~LATGS~DGtIkIWDi~tg~~l~tL~gH~~~VtsIafSPDg~lLASGS~DGtIrIWDl~tgk 345 (1784)
..||...|+|++|+|++++||+|+.||+|+||+..++..+..+. |...|.+++|+| +++|++++.|++|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECC-CCCCEEEEEECC-CCEEEEEECCCEEEEEECCCCC
T ss_conf 16889984899997999989999297989999689947999868-999779999908-9889999895959999899996
Q ss_pred EEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 05884177885599995279995079999928990999936788665525137999732488878888899999763899
Q 000251 346 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 425 (1784)
Q Consensus 346 ~i~~l~gH~~~VtsIafSPdg~~~~~LvSgs~DGtIrIWDl~tg~~l~~i~l~~~~~~~~g~~~~~~~s~~~h~~~V~sI 425 (1784)
++..+. |...|++++|+|++. +|++|+.||.|++||+.++.+. .+..+..... ......|...|.++
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~---~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~--------~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLD---WMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKS--------SFFPAARLSPIVSI 157 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCS---EEEEEETTSCEEEEETTTTEEE-EEEECCHHHH--------HTCSSSCCCCCCEE
T ss_pred EEEEEC-CCCCEEEEEECCCCC---EEEEECCCCCEEEEECCCCCCC-CCEECCCCCC--------CCCCCCCCCCEEEE
T ss_conf 899974-899879999879999---8999949992999999999626-5030432100--------02544578973899
Q ss_pred EECCC-CCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECC------------------CCCCCEEEEECCCCCCCC
Q ss_conf 98779-98899940895099973899999899999851233037------------------888800799826762333
Q 000251 426 AFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG------------------HENDVNYVQFSGCAVASR 486 (1784)
Q Consensus 426 afSPd-G~~LaSGs~DGtIrIWDl~t~~~~~s~~~~~~i~~l~g------------------H~~~V~sIafspdglas~ 486 (1784)
+|+|+ +..|++|+.|+.| +||+.++. .+..+.+ |...|.+++|+|++
T Consensus 158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg---- 223 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYVTL-TYSLVENE---------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS---- 223 (902)
T ss_dssp EEETTEEEEEEEECSSCEE-EEETTTTE---------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS----
T ss_pred EECCCCCCEEEEEECCCCE-EEECCCCC---------EEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC----
T ss_conf 9766999989999189849-99877896---------579983355776777654433234567776899985999----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 33457888888875556556687089980798099992788888853222112224569999999999999983000589
Q 000251 487 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 566 (1784)
Q Consensus 487 ~~~~~s~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~t~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 566 (1784)
..|++++.||.|++||+.+++...... ......... . ... ......+
T Consensus 224 ----------------------~~lasgs~Dg~i~lWd~~~g~~~~~r~----l~~~~~~~~-~-----~~~-~~~~~~~ 270 (902)
T 2oaj_A 224 ----------------------LHIITIHEDNSLVFWDANSGHMIMART----VFETEINVP-Q-----PDY-IRDSSTN 270 (902)
T ss_dssp ----------------------SEEEEEETTCCEEEEETTTCCEEEEEC----SSCSCTTSC-C-----TTC-CCCCSSC
T ss_pred ----------------------CEEEEEECCCEEEEEECCCCCEEEEEE----ECCCCCCCC-C-----CCC-CCCCCCC
T ss_conf ----------------------999999899939999878996888885----012345787-7-----767-8888555
Q ss_pred CCCEEEEEEC----CCC-CEEEEEECC-----CEEEEEECC------------------CCCEEEEEE-CCCCCEEEEEE
Q ss_conf 9971299986----899-789999539-----739999889------------------994599980-69998499999
Q 000251 567 PRGVNMIVWS----LDN-RFVLAAIMD-----CRICVWNAA------------------DGSLVHSLT-GHTESTYVLDV 617 (1784)
Q Consensus 567 ~~~VtsIafS----PDG-~~LaSgs~D-----GsIrIWDl~------------------tgkli~~L~-gH~~~VtsIaf 617 (1784)
...|++++|+ |++ .+|++|+.+ ..+.+|++. +++....+. ++.+.|..+.+
T Consensus 271 ~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 350 (902)
T 2oaj_A 271 AAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILP 350 (902)
T ss_dssp CCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEE
T ss_conf 67745799973499988789996887777888528999547898755542556546641745227874189995479999
Q ss_pred EC---------CCCCEEEEEECCCCEEEEECCCCCEEEE-----------------------------------------
Q ss_conf 05---------9994999995899299996899922899-----------------------------------------
Q 000251 618 HP---------FNPRIAMSAGYDGKTIVWDIWEGIPIRI----------------------------------------- 647 (1784)
Q Consensus 618 SP---------dd~~lLaSgs~DG~IrIWDl~tg~~i~t----------------------------------------- 647 (1784)
.+ .++..+++++.||.|++|++.+|.....
T Consensus 351 ~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~ 430 (902)
T 2oaj_A 351 IPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYL 430 (902)
T ss_dssp CCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCS
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCC
T ss_conf 77889886778785069999179848999789998556555689852235897248999974999998888604699975
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCC-----------------CCCCCEEECCCCCCEEECCCCC
Q ss_conf 86068535799993799999999589709999989983113-----------------5533113317985068814786
Q 000251 648 YEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK-----------------DAKYDQFFLGDYRPLVQDTYGN 710 (1784)
Q Consensus 648 l~~h~~~ItsiafSPDGk~LAsgs~DG~I~IWdi~sGe~~~-----------------~~~~~~~fs~D~r~Li~d~~g~ 710 (1784)
+.+|...+..++|+|||++||+++.||.|++|++.++.... .......|++|++.|+......
T Consensus 431 l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dg 510 (902)
T 2oaj_A 431 LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETG 510 (902)
T ss_dssp CCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 45785778753336667589996589838999787764567736775015413778887646999638999699994585
Q ss_pred ---EEECCCCCC--------CCCCCCCCCCCCC-------------CCCCCCCCC--HHHHHCCCCCCCCEEECCCCCEE
Q ss_conf ---231221114--------6768878756678-------------888899951--00101001662206987999849
Q 000251 711 ---VLDQETQLA--------PHRRNLQDPLCDS-------------AMIPYPEPY--QTMYQQRRLGALGIEWRPSSLKL 764 (1784)
Q Consensus 711 ---Vld~~tql~--------p~l~~i~~~L~D~-------------~~~p~p~~~--q~l~~~r~~gv~~iAfSPDG~~L 764 (1784)
+++..+... +....+...-++. ........+ ...+.++...+.+++||||| +|
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EE
T ss_conf 79999924865557545577866511345513467965432242368988777601469998688867799964876-89
Q ss_pred EEEECCCCCCCEEEECCCCCCCCC----C----CCCCCCCEEEEC-----CCC---CCCCCCCCCCCCCCCCC
Q ss_conf 996189988726840179866223----7----876541013547-----998---84357999965554357
Q 000251 765 AVGPDFSLDQGYQLQPLADLDVMI----D----PLPEFIDVMDWE-----PEN---EVQSDDNDSEYNVAEEY 821 (1784)
Q Consensus 765 Avg~d~s~~~~i~l~~l~~~~~li----~----plp~~i~~iafs-----PDg---~~ls~~~~~~~~~~e~~ 821 (1784)
|++ +.++.+++|++.++..+. . ...+.|.+++|+ ||+ ..+.....++-+..|+.
T Consensus 590 Asg---s~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 590 GIA---YAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEE---ETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEE---ECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEE
T ss_conf 999---5897699998889839997024672646666139999999841789876338999956873999999
Done!