Query 000253
Match_columns 1780
No_of_seqs 275 out of 429
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 16:40:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000253.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_32-36//hhsearch_pdb/000253hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxl_A Vacuolar protein sortin 1.0 1 1 218.6 10.4 133 33-188 6-139 (183)
2 2rkk_A Vacuolar protein sortin 1.0 1 1 151.0 10.3 119 46-184 5-140 (168)
3 4hg6_A Cellulose synthase subu 1.0 1 1 34.3 1.4 16 223-239 153-169 (802)
4 2ysr_A DEP domain-containing p 1.0 1 1 18.2 -2.6 29 803-831 10-38 (105)
5 2z86_A Chondroitin synthase; G 1.0 1 1 17.2 -0.3 126 1278-1422 440-565 (625)
6 1ich_A TNF-1, tumor necrosis f 1.0 1 1 16.3 2.4 81 1084-1164 11-103 (112)
7 1t8h_A YLMD protein sequence h 1.0 1 1 16.1 1.4 13 1131-1143 148-160 (277)
8 2bsz_A Arylamine N-acetyltrans 1.0 1 1 15.9 -1.1 16 1337-1352 177-192 (278)
9 2vfb_A Arylamine N-acetyltrans 1.0 1 1 15.7 -0.5 16 1337-1352 177-192 (280)
10 3fgr_B Putative phospholipase 1.0 1 1 15.0 0.7 16 1374-1389 329-344 (357)
No 1
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=1.00 E-value=1 Score=218.59 Aligned_cols=133 Identities=20% Similarity=0.186 Sum_probs=112.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCC
Q ss_conf 7787683434766714899753321147990201524999975002799888862368999876999998600-125875
Q 000253 33 IAGYVPSSLANNRDIDAILRAADEIQEEDPSVSRILCEHAYSLAQNLDPNSEGRGVLQFKTGLMSVIKQKLAK-REVGTI 111 (1780)
Q Consensus 33 ~s~~VP~sL~~~~~I~~iLrvA~Eie~~dP~VAylcr~yA~e~a~~lDp~S~gRGVrQFKt~Ll~~Leq~le~-~~~~~I 111 (1780)
.-+.||++|+ +|.||||+|+|+|++||+||||||+||+|++++||++ |+||+||+|+||++||+.+.. .+++.|
T Consensus 6 ~l~~vP~~LK---~I~p~L~~A~Ele~~~PvVaY~Cr~yA~e~~l~l~~~--~~e~~~f~~~LLd~LE~~K~~~~~~dai 80 (183)
T 2lxl_A 6 PLPPLPAQFK---SIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSK--TPECRKFLSKLMDQLEALKKQLGDNEAI 80 (183)
T ss_dssp CCCCCCGGGS---SSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCSC--CTTHHHHHHHHHHHHHHHHHHHCSCHHH
T ss_pred CCCCCCHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 8999986678---6799999999986416378899999999998630568--8469999999999999988752320477
Q ss_pred CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 66112899999999999872116779999983004865687315677688899999998999999999500797887
Q 000253 112 DRSQDVARLQEFYKRYREKNNVDKLREEEMLLRESGVFSGHLGELERKTVKRKRVFATLKVLGMVLEQLTQEIPEEL 188 (1780)
Q Consensus 112 ~~s~D~~elq~fy~~Y~~k~~i~~l~~ad~~dR~~~~f~~~~~~~~r~~~~~~K~y~TA~vL~eVL~~~~~~~~~~~ 188 (1780)
+++.. .|.|+++|+.|.| ..+|++||+ ++++ ++++|.|+||++|||||++||+.+++..
T Consensus 81 --~~~~~-~~ayve~fAlklF----~~Ad~~dRa-~~~t----------~~~~k~F~aA~~f~eVL~~fg~l~~e~~ 139 (183)
T 2lxl_A 81 --TQEIV-GCAHLENYALKMF----LYADNEDRA-GRFH----------KNMIKSFYTASLLIDVITVFGELTDENV 139 (183)
T ss_dssp --HCHHH-HHHHHHHHHHHHH----HHHHHHHHT-TCCC----------HHHHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred --HHHHH-HHHHHHHHHHHHH----HHHHHHHHC-CCHH----------HHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf --62999-9999999999999----989877651-3505----------9999999999999999998779988999
No 2
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=150.95 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHHCCC-CCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCC-------------
Q ss_conf 714899753321147-990201524999975002799888862368999876999998600-12587-------------
Q 000253 46 DIDAILRAADEIQEE-DPSVSRILCEHAYSLAQNLDPNSEGRGVLQFKTGLMSVIKQKLAK-REVGT------------- 110 (1780)
Q Consensus 46 ~I~~iLrvA~Eie~~-dP~VAylcr~yA~e~a~~lDp~S~gRGVrQFKt~Ll~~Leq~le~-~~~~~------------- 110 (1780)
+|.|+|+.|+|+|+. +|.||||||+||.|.+++++. .++++++|.+.||++||+.+.. .++++
T Consensus 5 ~i~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~~~--~s~e~~~~l~~LlD~LE~~K~~~~~~e~~~~~~~~~~~~~~ 82 (168)
T 2rkk_A 5 NAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEED--RSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLHVMNT 82 (168)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCTT--CCHHHHHHHHHHHHHHHHHHHTTC-----------CTTTTH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 2899999999988456862039999999999873689--98689999999999999999862353211210000256545
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Q ss_conf -5661128999999999998721167799999830048656873156776888999999-9899999999950079
Q 000253 111 -IDRSQDVARLQEFYKRYREKNNVDKLREEEMLLRESGVFSGHLGELERKTVKRKRVFA-TLKVLGMVLEQLTQEI 184 (1780)
Q Consensus 111 -I~~s~D~~elq~fy~~Y~~k~~i~~l~~ad~~dR~~~~f~~~~~~~~r~~~~~~K~y~-TA~vL~eVL~~~~~~~ 184 (1780)
| ++|+. .+.|.++|+.+.| ..+|++||+ |+++ ++++|.|+ ||..++.||..+|+.+
T Consensus 83 ~i--~d~~~-a~a~ve~FAlklF----~~Ad~~dra-g~~~----------k~~~k~fy~ta~~F~avl~~fg~~~ 140 (168)
T 2rkk_A 83 LI--HDQEK-AKIYMLNFTMSLY----NEKLKQLKD-GPWD----------VMLKRSLWCCIDLFSCILHLWKENI 140 (168)
T ss_dssp HH--HCHHH-HHHHHHHHHHHHH----HHHHHHHHT-SCCS----------HHHHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HC--CCHHH-HHHHHHHHHHHHH----HHHHHHHHC-CCCC----------HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 41--54899-9999999999999----988988865-8720----------6689899999999999998708864
No 3
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=34.31 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=7.6
Q ss_pred HHH-HHHHHHHHHCCCCC
Q ss_conf 348-99999997329999
Q 000253 223 PEV-QAAVSALKYFGDLP 239 (1780)
Q Consensus 223 pEv-~aA~~Al~~~~~lP 239 (1780)
+++ +.++.++... .||
T Consensus 153 ~~lL~~~L~Sl~~q-~yp 169 (802)
T 4hg6_A 153 ADMLSVTLAAAKNM-IYP 169 (802)
T ss_dssp HHHHHHHHHHHHTS-SCC
T ss_pred HHHHHHHHHHHHHC-CCC
T ss_conf 99999999999846-699
No 4
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=18.23 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHCCC
Q ss_conf 11107999972001357787778772468
Q 000253 803 FSPFWNEIIKNLREEDYITNLEMELLLMP 831 (1780)
Q Consensus 803 Fs~vWNeII~S~reEdLIs~rE~~lL~~p 831 (1780)
-..+||+||..||....|-||...+=.++
T Consensus 10 at~lw~~ii~~~~~g~~ikdrr~~lk~y~ 38 (105)
T 2ysr_A 10 ATKLWNEVTTSFRAGMPLRKHRQHFKKYG 38 (105)
T ss_dssp HHHHHHHHHHHHHHSCSCCCCCCSSSSCS
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCEECC
T ss_conf 78999999999975997532346889988
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=17.21 Aligned_cols=126 Identities=17% Similarity=0.134 Sum_probs=56.7
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEECCCCHHHCCCCCCCHHHH
Q ss_conf 89877854412220354311225895011899861220599886306999964740343020166021201111211366
Q 000253 1278 EGKPENQNHAVIFTRGNAIQTIDMNQDNYFEEALKMRNLLEEFHADHGIRPPTILGVREHVFTGSVSSLAYFMSNQETSF 1357 (1780)
Q Consensus 1278 eGKpeNQNhAiiFtRGe~lQtIDmNQDnYlEEalKmrnlL~ef~~~~~~~~~~IlG~RE~IFt~~vssLa~f~a~qE~sF 1357 (1780)
.|+..+-|.++-.++||++-.+|. |..++ .=++..+++.|+++. .+.+++.....+.++-..+.........+-
T Consensus 440 ~G~~~a~n~g~~~a~g~~i~~ld~--D~~~~-~~~l~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (625)
T 2z86_A 440 KGIGSASNTAVRLCRGFYIGQLDS--DDFLE-PDAVELCLDEFRKDL---SLACVYTTNRNIDREGNLISNGYNWPIYSR 513 (625)
T ss_dssp CCHHHHHHHHHHHCCSSEEEECCT--TCEEC-TTHHHHHHHHHHHCT---TCSEEEEEEEEECTTSCEEEECCCCSSCCH
T ss_pred CCHHHHHHHHHHHCCCCEEEEECC--CCCCC-HHHHHHHHHHHHHCC---CEEEEEEEEEEECCCCCEECCCCCCCCCCH
T ss_conf 898999999998567787999889--76628-359999999998479---813998204898799987416766665788
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 67667741165642222368954321021236863322000123043311110101572000332
Q 000253 1358 VTLGQRVLANPLKCRMHYGHPDVFDRVFHITRGGISKASRVINISEDIYAGFNTTLRQGNVTHHE 1422 (1780)
Q Consensus 1358 ~Tl~qR~la~Pl~vr~HYGHPDvfd~~f~~trGGiSKAsk~i~lsEDifaG~n~~lRgG~i~h~e 1422 (1780)
.. +...+-.||.=++.+-....-||....- ...||.--.......| ++.+..
T Consensus 514 ----~~-----~~~~~~~~~~~~~~r~~~~~~ggfd~~~---~~~eD~dl~~r~~~~g-~~~~~~ 565 (625)
T 2z86_A 514 ----EK-----LTSAMICHHFRMFTARAWNLTEGFNESI---SNAVDYDMYLKLSEVG-PFKHIN 565 (625)
T ss_dssp ----HH-----HTTSCCCCSCEEEEHHHHTTTTCCCSSC---SSCHHHHHHHHHTTTS-CEEEEE
T ss_pred ----HH-----HHHCCCCCCEEEEEHHHHHHHCCCCCCC---CCHHHHHHHHHHHHHC-CEEEEC
T ss_conf ----89-----8535467746898899999728999736---8727999999999749-999828
No 6
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=1.00 E-value=1 Score=16.27 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHCC-HHHHHHHHHHCCCCCCCCCCCCCCC-----HHHHHHHHHHHHCC------HHHHHHHCCCCCHHH
Q ss_conf 97319999986292-2444489761899898653235995-----12565545334031------024130011003899
Q 000253 1084 DGISILFYLQKIYP-DEWKNFLSRIGRDENSQDTELFDSP-----SDILELRFWASYRA------QTLARTVRGMMYYRK 1151 (1780)
Q Consensus 1084 dgisiL~YLq~iyp-dEW~NFleR~~~~~~~~~~~~~~~~-----~~~~~lRlWAS~Rg------QTL~RTV~Gmm~Y~~ 1151 (1780)
+.-.+|+..-..-| .+|+.|+.++|..+.+-+.-..+.| ..-.=||.|---.| +||..+.+.|=--..
T Consensus 11 ~~~~~l~~i~d~v~~~~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~~ 90 (112)
T 1ich_A 11 DDPATLYAVVENVPPLRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLGC 90 (112)
T ss_dssp --CHHHHHHHHHSCSTTHHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf 24599999999678999999999919988899999987768759999999999998648887749999999998262779
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999997520897
Q 000253 1152 ALMLQAYLERMTS 1164 (1780)
Q Consensus 1152 Al~l~~~~e~~~~ 1164 (1780)
|-+++..++..+.
T Consensus 91 ae~Ie~~l~~~~~ 103 (112)
T 1ich_A 91 LEDIEEALCGPAA 103 (112)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999853346
No 7
>1t8h_A YLMD protein sequence homologue; rbstp0554, structural genomics, unknown function, PSI, protein structure initiative; 1.80A {Geobacillus stearothermophilus} SCOP: d.194.1.2
Probab=1.00 E-value=1 Score=16.07 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=4.5
Q ss_pred HHHHCCHHHHHHH
Q ss_conf 3340310241300
Q 000253 1131 WASYRAQTLARTV 1143 (1780)
Q Consensus 1131 WAS~RgQTL~RTV 1143 (1780)
|--..+.-+.+||
T Consensus 148 WrGt~~gI~~~tv 160 (277)
T 1t8h_A 148 WRGTAGGIAGHMV 160 (277)
T ss_dssp HHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 3777745999999
No 8
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=1.00 E-value=1 Score=15.95 Aligned_cols=16 Identities=6% Similarity=-0.147 Sum_probs=8.8
Q ss_pred EEECCCCHHHCCCCCC
Q ss_conf 0201660212011112
Q 000253 1337 HVFTGSVSSLAYFMSN 1352 (1780)
Q Consensus 1337 ~IFt~~vssLa~f~a~ 1352 (1780)
|-|+..--..+||...
T Consensus 177 Y~F~~~~~~~~Df~~~ 192 (278)
T 2bsz_A 177 YRFDLQPQYEVDYSVT 192 (278)
T ss_dssp EEECCCCBCHHHHHHH
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9985776689999999
No 9
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=1.00 E-value=1 Score=15.74 Aligned_cols=16 Identities=6% Similarity=-0.064 Sum_probs=8.0
Q ss_pred EEECCCCHHHCCCCCC
Q ss_conf 0201660212011112
Q 000253 1337 HVFTGSVSSLAYFMSN 1352 (1780)
Q Consensus 1337 ~IFt~~vssLa~f~a~ 1352 (1780)
|-|+..--..+||...
T Consensus 177 Y~F~~~~~~~~Df~~~ 192 (280)
T 2vfb_A 177 YEFSTLTRPQVDLRVG 192 (280)
T ss_dssp EEECCSCCCHHHHHHH
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9995775788999997
No 10
>3fgr_B Putative phospholipase B-like 2 40 kDa form; alpha beta, glycosylated, disulphide bonds, N-terminal nucle hydrolase fold, two chain form; HET: NAG; 1.80A {Mus musculus} PDB: 3fgt_B*
Probab=1.00 E-value=1 Score=15.05 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 2368954321021236
Q 000253 1374 HYGHPDVFDRVFHITR 1389 (1780)
Q Consensus 1374 HYGHPDvfd~~f~~tr 1389 (1780)
|+||||+||=-|...+
T Consensus 329 H~G~Pd~~~F~~v~~~ 344 (357)
T 3fgr_B 329 HMGQPDLWMFSPIRVP 344 (357)
T ss_dssp CTTCCSEECCCCEEEC
T ss_pred CCCCCCCCCCCCEEEE
T ss_conf 6998867277778987
Done!