Query 000253
Match_columns 1780
No_of_seqs 275 out of 429
Neff 4.6
Searched_HMMs 13730
Date Tue Mar 26 16:50:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000253.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_32-36//hhsearch_scop/000253hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gl5a1 c.1.11.2 (A:123-400) P 5.4 63 0.0046 5.7 0.4 23 1299-1321 174-196 (278)
2 d1xhba2 c.68.1.17 (A:95-422) P 4.4 82 0.006 4.9 1.7 26 1402-1427 224-249 (328)
3 d1vjea_ d.185.1.2 (A:) Autoind 3.2 1.2E+02 0.009 3.5 2.1 91 283-399 31-124 (149)
4 d2yrka1 g.37.1.4 (A:8-55) Zinc 3.0 81 0.0059 4.9 -1.1 11 1330-1340 18-28 (48)
5 d1wlna1 b.26.1.2 (A:8-114) Afa 2.9 1.4E+02 0.01 3.2 2.9 22 1284-1305 52-73 (107)
6 d1w4ta1 d.3.1.5 (A:1-277) Aryl 2.4 1.7E+02 0.012 2.5 0.3 88 1373-1460 47-157 (277)
7 d1t4wa_ b.2.5.2 (A:) Transcrip 2.4 1.7E+02 0.013 2.4 1.0 11 1096-1106 180-191 (196)
8 d1hfes_ a.137.4.1 (S:) Fe-only 2.3 1.8E+02 0.013 2.3 2.7 40 88-127 1-40 (88)
9 d1dfma_ c.52.1.5 (A:) Restrict 2.3 1.8E+02 0.013 2.3 4.2 53 1280-1336 120-172 (223)
10 d2p62a1 e.67.1.1 (A:1-241) Hyp 2.3 1.8E+02 0.013 2.3 2.7 110 1269-1383 32-149 (241)
No 1
>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}
Probab=5.45 E-value=63 Score=5.73 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 25895011899861220599886
Q 000253 1299 IDMNQDNYFEEALKMRNLLEEFH 1321 (1780)
Q Consensus 1299 IDmNQDnYlEEalKmrnlL~ef~ 1321 (1780)
+|...-+=+-|++|+..+.+.+.
T Consensus 174 ~d~~~~GGit~~~kia~la~~~g 196 (278)
T d2gl5a1 174 PDLCLCGGITEGKKICDYANIYD 196 (278)
T ss_dssp CCTTTTTHHHHHHHHHHHHHTTT
T ss_pred ECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 31210056366777654554403
No 2
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.42 E-value=82 Score=4.88 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 04331111010157200033213204
Q 000253 1402 SEDIYAGFNTTLRQGNVTHHEYIQVG 1427 (1780)
Q Consensus 1402 sEDifaG~n~~lRgG~i~h~eyiq~G 1427 (1780)
.||+=-++.....|++|.+..-..++
T Consensus 224 ~ED~Dl~~R~~~~G~~i~~~p~~~v~ 249 (328)
T d1xhba2 224 GENLEISFRIWQCGGTLEIVTCSHVG 249 (328)
T ss_dssp CCCSHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCEEEEECCEEEE
T ss_conf 56999999999809919993776999
No 3
>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}
Probab=3.16 E-value=1.2e+02 Score=3.54 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 0010279999999940299999---9999998549999766158765431112472458999999998660233543452
Q 000253 283 NEQSRLGIPDENEPKLDEAAVQ---RVFMKSLDNYIKWCDYLCIQPVWSSLEAVGKEKKILFVSLYLLIWGEAANIRFLP 359 (1780)
Q Consensus 283 Nr~sR~~~~~~~~~~Ld~~AL~---~Lh~k~f~NYkkWC~fL~~k~~w~~~~~~~~~~~ll~iALYLLIWGEAaNLRFMP 359 (1780)
+-..|+..|++ +-++..++. .|.+.++.|+..|- --|.||.+.+ +.||++||+ .-|
T Consensus 31 ~fDlR~~qPN~--~~m~~~~~HTlEHL~A~~lRn~~~~i------Id~sPMGCrT--------GFYl~~~g~-----~~~ 89 (149)
T d1vjea_ 31 KYDLRFLQPNQ--GAIDPAAIHTLEHLLAGYMRDHLEGV------VDVSPMGCRT--------GMYMAVIGE-----PDE 89 (149)
T ss_dssp EEEEECSCTTS--CCCCHHHHHHHHHHHHHHHHHHCTTE------EEEEECTTSS--------EEEEEEESS-----CCH
T ss_pred EEEEEECCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCE------EEECCCCCCC--------CCEEEEECC-----CCH
T ss_conf 98886427984--55887412499998898887377884------8887876562--------027988579-----999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4699999954686566520457799997767885321112
Q 000253 360 ECLCYIFHHMAREMDVILGQQTAQPANSCTSENGVSFLDQ 399 (1780)
Q Consensus 360 ECLCfIFH~Ma~el~~~L~~~~~~~~~~~~~~~e~sFLd~ 399 (1780)
|=+.=+++.+. .+++.....-| -+...+-|.|+++
T Consensus 90 ~~i~~~~~~~l---~~i~~~~~~VP--ga~~~qCGny~~h 124 (149)
T d1vjea_ 90 QGVMKAFEAAL---KDTAGHDQPIP--GVSELECGNYRDH 124 (149)
T ss_dssp HHHHHHHHHHH---HHHHTCCSCCT--TCSTTTCTTTTCC
T ss_pred HHHHHHHHHHH---HHHHHCCCCCC--CCCHHCCCCHHHC
T ss_conf 99999999999---99983468888--8782318893668
No 4
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.01 E-value=81 Score=4.92 Aligned_cols=11 Identities=36% Similarity=0.930 Sum_probs=5.1
Q ss_pred EEECCCCEEEC
Q ss_conf 47403430201
Q 000253 1330 TILGVREHVFT 1340 (1780)
Q Consensus 1330 ~IlG~RE~IFt 1340 (1780)
+-+-+|+||||
T Consensus 18 ~~~SvrdHiFs 28 (48)
T d2yrka1 18 ARLSIRDHIFS 28 (48)
T ss_dssp SSSCHHHHHTS
T ss_pred EECCHHHHHHH
T ss_conf 10216766522
No 5
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.87 E-value=1.4e+02 Score=3.15 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=18.0
Q ss_pred CCCEEEEECCCCCCCCCCCCCC
Q ss_conf 5441222035431122589501
Q 000253 1284 QNHAVIFTRGNAIQTIDMNQDN 1305 (1780)
Q Consensus 1284 QNhAiiFtRGe~lQtIDmNQDn 1305 (1780)
..||.|-..++.+...|.+..|
T Consensus 52 ~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 52 PHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp SSCEEEEESSSCEEEEESCSSS
T ss_pred EEEEEEEECCCCCEEECCCCCC
T ss_conf 2199999724631995278886
No 6
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.41 E-value=1.7e+02 Score=2.48 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE-------------EEEEE-EEECCCC--
Q ss_conf 223689------5432102123686332200012304331111010157200-------------03321-3204654--
Q 000253 1373 MHYGHP------DVFDRVFHITRGGISKASRVINISEDIYAGFNTTLRQGNV-------------THHEY-IQVGKGR-- 1430 (1780)
Q Consensus 1373 ~HYGHP------Dvfd~~f~~trGGiSKAsk~i~lsEDifaG~n~~lRgG~i-------------~h~ey-iq~GKGR-- 1430 (1780)
.|+|+| ++|+|+-.--|||..=-..++=-.==-=-||++.+-+|+| +|.-- ++++.++
T Consensus 47 ~~~g~~i~ld~~~l~~kiV~~~rGGyC~E~N~Lf~~lL~~LGf~v~~~~arV~~~~~~~~~~~~~~H~~l~V~i~~~~yl 126 (277)
T d1w4ta1 47 VLLDRPIEIDADKVFAKVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAEGEFL 126 (277)
T ss_dssp HHTTCCCCCSHHHHHHHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETTEEEE
T ss_pred HHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEE
T ss_conf 32399877999999999986577723451569999999986980699889997368888888887418999998990699
Q ss_pred -CCCCCCCCCCEECCCCCCCCCCCHHHHHHC
Q ss_conf -457632212000124776541000346721
Q 000253 1431 -DVGLNQIAVFEGKVAGGNGEQVLSRDVYRL 1460 (1780)
Q Consensus 1431 -DvG~~qI~~Fe~Kia~G~gEQ~lSRd~yrL 1460 (1780)
||||+.....+.=--.+-.+|.--.+.||+
T Consensus 127 vDvGfG~~~~~~Pl~l~~~~~~~~~~~~~r~ 157 (277)
T d1w4ta1 127 VDVGFGSANPPRALPLPGDEADAGQVHCVRL 157 (277)
T ss_dssp ECSCSGGGCCSSCEESSCCTTCTTCSEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 8403677685646237887531367517999
No 7
>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=2.38 E-value=1.7e+02 Score=2.43 Aligned_cols=11 Identities=64% Similarity=1.494 Sum_probs=0.0
Q ss_pred CC-HHHHHHHHH
Q ss_conf 92-244448976
Q 000253 1096 YP-DEWKNFLSR 1106 (1780)
Q Consensus 1096 yp-dEW~NFleR 1106 (1780)
|| .+|+||-||
T Consensus 180 yprrdwknfce~ 191 (196)
T d1t4wa_ 180 YPRRDWKNFCER 191 (196)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 341366766444
No 8
>d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=2.33 E-value=1.8e+02 Score=2.33 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3689998769999986001258756611289999999999
Q 000253 88 VLQFKTGLMSVIKQKLAKREVGTIDRSQDVARLQEFYKRY 127 (1780)
Q Consensus 88 VrQFKt~Ll~~Leq~le~~~~~~I~~s~D~~elq~fy~~Y 127 (1780)
|+|.+-.|+.+++..-..|....+..++|-.+++..|+.|
T Consensus 1 v~~~kd~l~~R~~~lY~~D~~~~iR~s~eNp~V~~LY~e~ 40 (88)
T d1hfes_ 1 VKQIKDYMLDRINGVYGADAKFPVRASQDNTQVKALYKSY 40 (88)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCSCCSGGGCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 9508999999999999987347767887699999999999
No 9
>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
Probab=2.30 E-value=1.8e+02 Score=2.30 Aligned_cols=53 Identities=28% Similarity=0.385 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 877854412220354311225895011899861220599886306999964740343
Q 000253 1280 KPENQNHAVIFTRGNAIQTIDMNQDNYFEEALKMRNLLEEFHADHGIRPPTILGVRE 1336 (1780)
Q Consensus 1280 KpeNQNhAiiFtRGe~lQtIDmNQDnYlEEalKmrnlL~ef~~~~~~~~~~IlG~RE 1336 (1780)
+.++-|-+||-|.| .+-+--|-|+|+|.+---=+-|.+..-.+ -|++|||.-|
T Consensus 120 ~~~~t~~~Ii~tk~--~~~~asn~~~y~e~~~~~L~~l~~~~v~d--vPi~~~gi~e 172 (223)
T d1dfma_ 120 DEEGMKVAIIITKG--HMFPASNSSLYYEQAQNQLNSLAEYNVFD--VPIRLVGLIE 172 (223)
T ss_dssp SSSBCCEEEEEEEC--TTSCCSTTBCCHHHHHHHHHHHHHTTCCC--SCEEEEEEEC
T ss_pred CCCCCCEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCEEEEEECC
T ss_conf 02466569999624--34203461479999999998627363234--5555566057
No 10
>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.29 E-value=1.8e+02 Score=2.28 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=0.0
Q ss_pred ECCCCCCCCCCCCCCCCCEE-EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEECCC-----
Q ss_conf 54899878889877854412-220354311225895011899861220599886306999964740343020166-----
Q 000253 1269 KLPGNPKLGEGKPENQNHAV-IFTRGNAIQTIDMNQDNYFEEALKMRNLLEEFHADHGIRPPTILGVREHVFTGS----- 1342 (1780)
Q Consensus 1269 kLpG~pilGeGKpeNQNhAi-iFtRGe~lQtIDmNQDnYlEEalKmrnlL~ef~~~~~~~~~~IlG~RE~IFt~~----- 1342 (1780)
++|-|.+++|+++|--||++ -=.-|-++-.|..+-..-.--+|+ |.|.--+- +.-.|.++|+---|=.++
T Consensus 32 ~~~~~~~~ie~~fer~~~~l~le~d~v~LaVi~seGns~v~rnL~--n~l~Am~v--~~~~v~~iGvA~DvDe~~ev~~~ 107 (241)
T d2p62a1 32 KLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLK--SVLDSVKL--GLLNVEEVYVVRDVDEGNDVFEW 107 (241)
T ss_dssp SCCCCCCHHHHCCCTTCCCEEEEETTEEEEEECSCCTTTHHHHHH--HHHHHHHH--TCCCEEEEEEEEESSSSSCHHHH
T ss_pred CCCCCCCHHHHHCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHH--HHHHHHHH--HCCCHHEEEEEEECCCCHHHHHH
T ss_conf 489766114432355663313433885899984788413778999--99999997--44461116888743760788999
Q ss_pred -CHHHCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCC
Q ss_conf -021201111211366676677411656422-22368954321
Q 000253 1343 -VSSLAYFMSNQETSFVTLGQRVLANPLKCR-MHYGHPDVFDR 1383 (1780)
Q Consensus 1343 -vssLa~f~a~qE~sF~Tl~qR~la~Pl~vr-~HYGHPDvfd~ 1383 (1780)
.|.|..+....+..|-... -+-..|+++- .+.++|++.-+
T Consensus 108 ~~s~l~~~e~~~~~g~~~~~-~~~i~pl~Ig~~~~~~p~~~~K 149 (241)
T d2p62a1 108 VLSFLREREVRVDNGAIVTE-GVKIYPYGMGNLTLNEPFVKEK 149 (241)
T ss_dssp HHTTCTTCCCEEETTEEEET-TEEEEEEEECCSCCCCTTBCCC
T ss_pred HHHHHHCCCCCCCCCEEEEC-CEEEEEEEECCCCCCCCHHHHC
T ss_conf 99986236754467728974-6699997633646686146542
Done!