Query 000254
Match_columns 1779
No_of_seqs 425 out of 1144
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 01:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03076 ARF guanine nucleotid 100.0 0E+00 0E+00 3317.2 171.4 1772 1-1779 1-1780(1780)
2 KOG0929 Guanine nucleotide exc 100.0 3E-265 7E-270 2524.1 99.4 1511 12-1771 1-1513(1514)
3 KOG0928 Pattern-formation prot 100.0 5E-123 1E-127 1172.6 97.5 1217 78-1487 64-1325(1386)
4 COG5307 SEC7 domain proteins [ 100.0 8.3E-88 1.8E-92 871.1 38.5 993 345-1510 1-1022(1024)
5 KOG1848 Uncharacterized conser 100.0 6.6E-63 1.4E-67 620.9 59.0 995 15-1489 16-1133(1610)
6 KOG0930 Guanine nucleotide exc 100.0 1.3E-50 2.9E-55 437.5 14.8 192 610-801 59-250 (395)
7 cd00171 Sec7 Sec7 domain; Doma 100.0 3.2E-49 7E-54 434.7 20.5 183 612-794 1-185 (185)
8 PF01369 Sec7: Sec7 domain; I 100.0 7.6E-49 1.7E-53 435.2 18.6 185 610-794 2-190 (190)
9 smart00222 Sec7 Sec7 domain. D 100.0 1.9E-48 4.1E-53 430.1 20.6 183 612-794 2-187 (187)
10 KOG0931 Predicted guanine nucl 100.0 1E-48 2.2E-53 446.2 15.0 193 612-804 197-395 (627)
11 KOG1846 Uncharacterized conser 100.0 6.3E-41 1.4E-45 400.9 50.7 922 709-1681 404-1591(1777)
12 PF12783 Sec7_N: Guanine nucle 100.0 1.9E-33 4.1E-38 307.7 17.6 162 335-497 2-168 (168)
13 KOG0932 Guanine nucleotide exc 99.9 1.2E-27 2.7E-32 279.8 13.9 154 644-797 307-460 (774)
14 PF09324 DUF1981: Domain of un 99.8 9.8E-22 2.1E-26 189.4 5.9 86 1162-1247 1-86 (86)
15 PLN03076 ARF guanine nucleotid 95.4 4.6 9.9E-05 59.1 29.8 145 1340-1510 1130-1278(1780)
16 KOG2023 Nuclear transport rece 94.8 3.6 7.7E-05 52.9 22.6 320 1126-1513 125-529 (885)
17 KOG2171 Karyopherin (importin) 90.6 72 0.0016 44.3 27.0 277 1142-1493 46-343 (1075)
18 KOG2171 Karyopherin (importin) 90.1 59 0.0013 45.1 25.6 139 1344-1510 115-256 (1075)
19 PF01602 Adaptin_N: Adaptin N 89.5 80 0.0017 41.2 33.0 425 1105-1680 54-484 (526)
20 PF03378 CAS_CSE1: CAS/CSE pro 84.1 1.2E+02 0.0027 38.8 22.9 97 1131-1229 69-168 (435)
21 KOG1241 Karyopherin (importin) 84.0 1.3E+02 0.0028 40.3 22.4 179 1232-1484 102-284 (859)
22 KOG0929 Guanine nucleotide exc 83.0 2.6E+02 0.0056 40.7 31.1 237 1121-1400 1063-1321(1514)
23 PF01602 Adaptin_N: Adaptin N 82.3 1.7E+02 0.0037 38.1 27.3 179 1081-1295 188-369 (526)
24 PF12348 CLASP_N: CLASP N term 73.4 1.4E+02 0.0029 34.4 17.4 176 1107-1296 26-207 (228)
25 PF14500 MMS19_N: Dos2-interac 72.4 1.3E+02 0.0028 36.0 16.9 154 1192-1396 95-257 (262)
26 KOG2956 CLIP-associating prote 71.1 2.2E+02 0.0048 36.3 18.4 161 1174-1385 326-487 (516)
27 PF12348 CLASP_N: CLASP N term 66.8 89 0.0019 36.0 13.9 104 367-476 21-124 (228)
28 PF11640 TAN: Telomere-length 63.2 85 0.0018 34.3 12.0 135 1354-1499 11-153 (155)
29 KOG1967 DNA repair/transcripti 62.0 2.6E+02 0.0055 38.5 17.5 162 1195-1400 143-308 (1030)
30 PF12719 Cnd3: Nuclear condens 61.3 64 0.0014 39.1 11.8 29 1359-1387 76-105 (298)
31 PF04510 DUF577: Family of unk 60.7 2E+02 0.0044 32.0 13.8 61 1424-1489 98-165 (174)
32 cd00020 ARM Armadillo/beta-cat 58.1 36 0.00079 34.1 7.7 109 1136-1248 10-119 (120)
33 KOG1848 Uncharacterized conser 55.8 8.8E+02 0.019 35.3 33.9 253 1103-1386 857-1144(1610)
34 KOG1824 TATA-binding protein-i 55.5 7.6E+02 0.016 34.4 46.1 237 1352-1659 574-816 (1233)
35 PF12783 Sec7_N: Guanine nucle 55.1 83 0.0018 34.6 10.4 120 1084-1208 9-146 (168)
36 PF02985 HEAT: HEAT repeat; I 54.8 21 0.00045 27.7 4.0 27 1350-1376 3-29 (31)
37 PF12717 Cnd1: non-SMC mitotic 53.1 1.2E+02 0.0025 33.9 11.3 110 1146-1271 1-111 (178)
38 PF12719 Cnd3: Nuclear condens 52.6 1.3E+02 0.0028 36.5 12.4 106 1132-1246 26-140 (298)
39 cd00020 ARM Armadillo/beta-cat 46.0 1.4E+02 0.003 29.8 9.8 110 1349-1487 9-119 (120)
40 PF12755 Vac14_Fab1_bd: Vacuol 44.6 3.1E+02 0.0067 27.6 11.5 94 1363-1487 2-95 (97)
41 PF12717 Cnd1: non-SMC mitotic 40.8 1.4E+02 0.0031 33.2 9.5 93 1360-1489 1-93 (178)
42 KOG1824 TATA-binding protein-i 40.2 1.2E+03 0.027 32.5 24.0 274 1190-1508 16-305 (1233)
43 PF08767 CRM1_C: CRM1 C termin 39.9 5.5E+02 0.012 31.6 15.1 120 1177-1298 66-197 (319)
44 KOG1077 Vesicle coat complex A 39.3 1.1E+03 0.025 31.8 21.5 79 1146-1226 273-358 (938)
45 PF08767 CRM1_C: CRM1 C termin 38.8 1.9E+02 0.004 35.6 10.8 111 1359-1492 83-198 (319)
46 KOG2956 CLIP-associating prote 36.8 4.4E+02 0.0096 33.7 13.2 108 1348-1483 288-395 (516)
47 PF12755 Vac14_Fab1_bd: Vacuol 36.5 2.2E+02 0.0047 28.7 9.0 72 1176-1249 25-96 (97)
48 KOG4535 HEAT and armadillo rep 36.2 6.5E+02 0.014 32.3 14.3 58 1444-1501 280-337 (728)
49 PF11864 DUF3384: Domain of un 35.6 1.1E+03 0.024 30.6 22.0 56 1348-1404 302-358 (464)
50 KOG2023 Nuclear transport rece 35.5 3.6E+02 0.0077 35.9 12.4 111 1131-1249 172-285 (885)
51 PRK09687 putative lyase; Provi 34.8 5.6E+02 0.012 30.9 13.9 91 1139-1249 29-120 (280)
52 cd03565 VHS_Tom1 VHS domain fa 34.6 3.8E+02 0.0082 28.9 11.1 64 412-475 50-115 (141)
53 KOG1248 Uncharacterized conser 33.3 1.7E+03 0.037 32.0 39.3 425 1179-1768 97-542 (1176)
54 PF10508 Proteasom_PSMB: Prote 32.5 1E+03 0.023 31.2 16.8 225 1111-1376 183-420 (503)
55 PF10508 Proteasom_PSMB: Prote 30.4 1.4E+03 0.03 30.1 24.3 259 1146-1483 51-314 (503)
56 PF11864 DUF3384: Domain of un 30.3 1.3E+03 0.029 29.8 22.6 201 1235-1515 149-358 (464)
57 PF02985 HEAT: HEAT repeat; I 28.9 96 0.0021 24.0 4.0 27 1135-1161 2-28 (31)
58 PF10274 ParcG: Parkin co-regu 27.4 46 0.00099 37.4 2.7 36 81-116 78-113 (183)
59 PF13646 HEAT_2: HEAT repeats; 27.3 1.4E+02 0.003 28.5 5.8 71 1143-1238 10-80 (88)
60 cd03568 VHS_STAM VHS domain fa 26.8 3.2E+02 0.0068 29.6 8.9 80 1143-1245 47-129 (144)
61 PLN03205 ATR interacting prote 24.9 5.3E+02 0.012 32.1 10.8 92 1109-1204 347-442 (652)
62 PF12830 Nipped-B_C: Sister ch 23.9 9.1E+02 0.02 27.2 12.3 146 1137-1299 12-167 (187)
63 PF13513 HEAT_EZ: HEAT-like re 23.4 1.3E+02 0.0027 26.4 4.3 51 1435-1485 4-54 (55)
64 PF12830 Nipped-B_C: Sister ch 23.3 3.6E+02 0.0079 30.3 9.0 91 81-185 6-96 (187)
65 cd03569 VHS_Hrs_Vps27p VHS dom 22.3 4E+02 0.0086 28.8 8.6 58 1143-1204 51-110 (142)
66 KOG1242 Protein containing ada 21.9 8.7E+02 0.019 32.2 12.7 108 1345-1488 214-324 (569)
67 KOG0915 Uncharacterized conser 21.6 2.9E+03 0.062 30.8 19.0 146 1343-1521 1035-1192(1702)
68 KOG2933 Uncharacterized conser 21.0 3.4E+02 0.0074 33.0 8.2 69 1426-1496 98-166 (334)
69 cd03567 VHS_GGA VHS domain fam 20.9 9E+02 0.019 26.1 10.8 68 406-474 43-115 (139)
No 1
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=0 Score=3317.25 Aligned_cols=1772 Identities=86% Similarity=1.283 Sum_probs=1507.8
Q ss_pred CCCcccccccccchHHHHHHHHhhhhccCChhHHHHHHHHHHHHHhcccCCC---CCCCCCCCCCCCCCCCCCCCCCCCC
Q 000254 1 MASSEAVSRLSQVVAPALEKIIKNASWRKHSKLAHECKSVLERLNSAQKQLP---SSPTESETEGSTPGPLHDGGPNEYS 77 (1779)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~i~~~~~~kk~~~l~~a~e~al~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (1779)
|+++++.++++.||+++||+|+++|++|||++||+||++||+.|++.+...+ ...++..++++.|.|+.++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1780)
T PLN03076 1 MASSEADSRLGKVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSIEYS 80 (1780)
T ss_pred CCcccccchhhHHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 7889999999999999999999999999999999999999999998763311 1112223456678888877776667
Q ss_pred ccChHHhHHHHHHHhccCCcchHHHHHHHHHHHhhcCCccCCCCCCCCchhhHHHHHHHHHhhccCCCChhHHHHHHHHH
Q 000254 78 LSESEFILSPLINACGTGFLKIADPALDCIQKMIAYGYLRGEADPTGGPEAKFLSKLIESVCKCHDLGDDAVELLVLKTL 157 (1779)
Q Consensus 78 ~~~~~~i~~Pl~lac~sk~~ki~~~ALdcl~KLi~~~~~~~~~~~~~~~~~~li~~iv~~i~~c~~~td~~vqLqIlk~L 157 (1779)
..+|+.||.||++||+||++||+.+|||||||||+||||.|+.++.++|..+++|++|++||+|++.+||+|||||||+|
T Consensus 81 ~~~~~~i~~pl~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c~~~~de~iqLqilk~L 160 (1780)
T PLN03076 81 LAESELILSPLINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKCHDLGDEGIELLVLKTL 160 (1780)
T ss_pred ccCHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999887666677899999999999999999999999999999
Q ss_pred HHHHcccccccchhhHHHHHHHHHhhhccccChhHHHHHHHHHHHHHHHHHhccccCCCCCCCcchhhhcccCCCCCCCc
Q 000254 158 LSAVTSMSLRIHGDCLLQIVRTCYDIYLGSKNVINQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMDPMEKSDA 237 (1779)
Q Consensus 158 ls~v~s~~~~vhg~~Ll~avrtcynI~l~sks~~nq~tA~atLtQmv~~VF~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1779)
|++|+++++.|||++||+|||||||||+.||+++||+||||||||||++||+||+.+..+.+.+++..++.+++.+.+..
T Consensus 161 l~~v~s~~~~vhg~~LLkaVR~cyni~l~Sks~~nq~tA~atLtQmv~~VF~R~e~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1780)
T PLN03076 161 LSAVTSTSLRIHGDCLLQAVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPAEKSDS 240 (1780)
T ss_pred HHHHcCCCceeEHHHHHHHHHHhheeeecCCcHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999998776565566666677777777666
Q ss_pred cccchhhhccccccccccccCCCCCcccccC---CCCCCCcccc-cccCCCCccccCCcchhhhhhhhhHHHhhhhhhcc
Q 000254 238 DRTMTMFVQGFITKIMQDIDGLLTPENKVSL---SGHDGAFETT-TVETTNPADLLDSTDKDMLDAKYWEISMYKTALEG 313 (1779)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (1779)
+++.+..+|+++++++.+.+++..+.....+ ..++++.+.. ...+..+.+.+++.+..+.+.+++++++.....++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1780)
T PLN03076 241 DTSMTQFVQGFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPADLLDSTDKDMLDAKYWEISMYKSALEG 320 (1780)
T ss_pred ccchhhhhhhhhhhhccccccccCcccccccccccccccccccccccCCCCcchhhcccccccccccccccccccccccc
Confidence 6667778889888877666544333221111 0112211111 11112222223333333344445555555555555
Q ss_pred CCCCccCCCCCCCchhhhhhhhhhhhcHHHHHHHHHhccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhCCccccCChH
Q 000254 314 RKGELVDGEGERDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKIVALELLKILLENAGAVFRTSDR 393 (1779)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~Da~lvfr~LC~Ls~k~~~~~~~~d~~~~rsk~lsLeLl~~iL~~~~~~f~~~~~ 393 (1779)
++++..+++...+++.++.+.++++||||+|||+|||||||+.+.++..||+.||+|+||||||+.+|+++|++|++||.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rsKllsL~Li~~ile~~g~~f~~~~~ 400 (1780)
T PLN03076 321 RKGELADGEVEKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDR 400 (1780)
T ss_pred cccccccccccccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHHHHHHHHHHHHHHhcccHhhhcCHH
Confidence 44443333322333445667789999999999999999999999887779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 000254 394 FLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLEKL 473 (1779)
Q Consensus 394 f~~~ik~~Lc~~Ll~n~~s~~~~vf~lsl~If~~L~~~~r~~LK~Eievf~~~i~l~ile~~~~~~~~qk~~vLe~l~~l 473 (1779)
|+++||+|||.+|+||++|++|+||++||+|||+|+.+||.|||.||||||++||+++||+.++++|+||+++|++|.+|
T Consensus 401 fi~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~l 480 (1780)
T PLN03076 401 FLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKL 480 (1780)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998667899999999999999
Q ss_pred hhChhHHHHHHHhcCCCCChhhHHHHHHHHHHhhccCCCCCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHhhhccCCC
Q 000254 474 CIDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPSTATSLLPPQESTMKLEAMKCLVAILRSMGDWMNKQLRIP 553 (1779)
Q Consensus 474 ~~~p~~lvely~NYDCd~~~~nife~lv~~L~k~a~~~~~~~~~~~~~~q~~~l~~~~l~~lv~il~sl~~w~~~~~~~~ 553 (1779)
|+||++++|||+|||||.+++||||+||+.|+|+|++.|++.+++..|+||+.||+.||+||++|++||.+|+++++..+
T Consensus 481 c~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~~~ 560 (1780)
T PLN03076 481 CVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRLP 560 (1780)
T ss_pred HhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999998877777778899999999999999999999999999876544
Q ss_pred CCCCCcchhhhccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHHhccCchhhHHH
Q 000254 554 DPQSTKKFEAVENISSGPEPGTVPMANGNGDELVEGSDSHSEASSEISDVSTIEQRRAYKLELQEGISLFNRKPKKGIEF 633 (1779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~l~~~~~~Fn~~p~~gi~~ 633 (1779)
........+.... +..+.+.+....++++...+.++.++.+...+++.+||++|++|..+++|+.+||+|||+||+|
T Consensus 561 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~ 637 (1780)
T PLN03076 561 DPASLKKLDAVEN---NLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEF 637 (1780)
T ss_pred cccccccchhhcc---ccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3221111111000 0000000111111111111122222333345778899999999999999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHhccCCCChhHHHhhhccCCchhHHHHHHHHhcCCCCCCChHHHHHHHhccCcCCCchHHHHH
Q 000254 634 LINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDR 713 (1779)
Q Consensus 634 l~~~~~~~~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~~~~~~~f~~~~~~~aLR~fl~~f~lpgE~q~idr 713 (1779)
|+++|+++++|++||+||++++||||++||||||+++++|++||++|++.|||+|++||+|||.||++||||||+|+|||
T Consensus 638 L~~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdR 717 (1780)
T PLN03076 638 LINANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDR 717 (1780)
T ss_pred HHHcCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCChhHHHHHHHHHHHhcccCCCccccCCCCHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHhCc
Q 000254 714 IMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNE 793 (1779)
Q Consensus 714 i~e~Fa~~y~~~np~~f~~~d~~y~laysiimLntdlhn~~~k~kmt~~~Fi~n~~gi~~~~~~~~~~L~~iY~~I~~~~ 793 (1779)
|||+||+|||+|||+.|.++|+||+||||+||||||+|||++|+|||+++|+||+||+|+|+|+|+|||++||++|+++|
T Consensus 718 ime~Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~e 797 (1780)
T PLN03076 718 IMEKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNE 797 (1780)
T ss_pred HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcchHHHhhhhcccccccccchhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHhhcccCCceeeccchHHHHHHHH
Q 000254 794 IKMKGDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYHAATDVVILRFMIE 873 (1779)
Q Consensus 794 i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e~vr~Mfe 873 (1779)
|++++|+.++.+++....+++.|+++.++.+.|++++++|+++++++++++++.++++.++..+.|+.++|.+|+|+||+
T Consensus 798 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe 877 (1780)
T PLN03076 798 IKMKEDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVE 877 (1780)
T ss_pred ccCcccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHH
Confidence 99999876655444445566678888888888888888999999999999999998887777889999999999999999
Q ss_pred HhHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCCCCccccchHHHHHHHHHHH
Q 000254 874 ACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVTIA 953 (1779)
Q Consensus 874 ~~W~piLaaLS~~l~~s~D~~~i~~~L~G~~~~i~Ia~~~~l~~~RDafl~sL~kfT~L~~~~~l~~Kni~alr~Ll~iA 953 (1779)
++|+|++||||++|++++|++++..||+||+.+|+|||.|||+++||+||++|||||.|+++.+|++||++|+|+||+||
T Consensus 878 ~~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~emk~Knv~Aik~ll~ia 957 (1780)
T PLN03076 878 VCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVSIA 957 (1780)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCchhhhHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCcchhhhhccccccccccccCCCCchhhhHhhhccCCcc
Q 000254 954 DEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQYAAATVMRGAYD 1033 (1779)
Q Consensus 954 ~~~G~~L~~sW~~IL~~isqle~Lqli~~g~~~d~~~~~~p~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~~~~~s~~ 1033 (1779)
+++||+|++||++||+|||||||||+|+.|++||..++..|+.+.+.+++.++...|...++++++.++..+...+++++
T Consensus 958 ~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~ 1037 (1780)
T PLN03076 958 DEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKRKGPGKLQYAAAAVRRGSYD 1037 (1780)
T ss_pred HHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhcccccccccccccccccccccccccccccchhhhhhcccccc
Confidence 99999999999999999999999999999999988776656555554455555566766656555444433334456666
Q ss_pred CCCCCCCCCCCCCHHHHhhhhhhhhHHHhhhcchhhHHHHhcccCChHHHHHHHHHHHHhhHHhhhcCCCCceehHHHHH
Q 000254 1034 SAGIGGSASGVVTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSASDPRVFSLTKIV 1113 (1779)
Q Consensus 1034 s~~~~~~~~~~~t~~~i~~~~~~~~vl~~i~s~~id~lF~~S~~L~~eai~~fv~ALc~vS~eel~~~~~pr~FsLqKLv 1113 (1779)
+...++.....++++++.....++.++++|+++.+|+||++|++|+++||++||+|||+||++||.++.+||+|+|+|||
T Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLv 1117 (1780)
T PLN03076 1038 SAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIV 1117 (1780)
T ss_pred cccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHH
Confidence 55555555667788888877777788888999999999999999999999999999999999999887789999999999
Q ss_pred HHHhhcccccccchhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcChH
Q 000254 1114 EIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAV 1193 (1779)
Q Consensus 1114 eV~~~Nm~Ri~l~W~~iW~~l~~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~ 1193 (1779)
||++|||+|||++|++||+++++||+++|||+|..|++||+|+||||+||||+++||++|+||++||+||++||.++.+.
T Consensus 1118 eIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~ 1197 (1780)
T PLN03076 1118 EIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAV 1197 (1780)
T ss_pred HHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHH
Q 000254 1194 EIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAF 1273 (1779)
Q Consensus 1194 eVre~vL~cl~qmi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F 1273 (1779)
+|||+|++|+.+||++++++|+|||++||+||+.|+.++++.+|+.||+++++|++|||+.++.++.++|.|||+||.+|
T Consensus 1198 eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~F 1277 (1780)
T PLN03076 1198 EIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAF 1277 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988865678999999999999
Q ss_pred HhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhccccccCCcchhhhhHHHHHHHHh
Q 000254 1274 TNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLS 1353 (1779)
Q Consensus 1274 ~~q~~~~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~~~~~lW~pLL~~L~ 1353 (1779)
++|+.++||||+||++||.|+++++++.+......... ..++..+....++..+...+.+.+.+.++|||||++|+
T Consensus 1278 a~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~----~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls 1353 (1780)
T PLN03076 1278 TNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDK----EAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLS 1353 (1780)
T ss_pred HhCcCcccccHHHHHHHHHHHHHHHhcccccccccccc----ccccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999988765332110000 00000011111111122233455567789999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCC-CCCCCCCCCcchhhhHHH
Q 000254 1354 ELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSP-GQGVDGDTGELDQDAWLY 1432 (1779)
Q Consensus 1354 ~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~-~~~~~~~s~~~~~~~Wl~ 1432 (1779)
++++|+|+|||++||+|||++|..||+.|++++|+.||++||||||+.++..++++....+ ++.+.....+.+.++|++
T Consensus 1354 ~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~ 1433 (1780)
T PLN03076 1354 ELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLY 1433 (1780)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999887655432211 111110112457899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHh
Q 000254 1433 ETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAKA 1512 (1779)
Q Consensus 1433 eT~~laL~~lv~lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~~~g~~f~~~~W~~i~~~l~~l~~~ 1512 (1779)
|||++||+++++||++||+.|+.+|++++++|.+||||+|++|||||++||++||.+||++|++++|++|+++|.++|+.
T Consensus 1434 eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1434 ETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCcchhhhhhhcccccccCCCCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHH
Q 000254 1513 TLPDFSYLGSEDCMAEIAAKGQINVESSGSGLPDDDSENLRTQHLFACIADAKCRAAVQLLLIQAVMEIYNMYRPCLSAK 1592 (1779)
Q Consensus 1513 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kcv~QLlliq~~~el~~~~~~~L~~~ 1592 (1779)
|+|+|...................+....++...+.......+++...+.++|||||+||||||++.+||++||++||++
T Consensus 1514 T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~~~~~l~~~~~~~l~~~ 1593 (1780)
T PLN03076 1514 TLPDFSYVVSGEYMPAENIQDSENAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPRLSAK 1593 (1780)
T ss_pred hCCchhhcccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 99997543221100000000000000000001111111111223333444588888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCChhhHHHHHhhccCCCCCCCCchhhHHHhHHHHHHHHHHHHhCCCCCCcHHhHHHHHHH
Q 000254 1593 NTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILDRPPTYEEADVESHLVN 1672 (1779)
Q Consensus 1593 ~l~~Ll~~L~~s~~fA~~fN~d~~LR~~L~k~g~~~~~~~PnLLkQE~~s~~~yl~iL~~l~~d~~~~~~~~~i~~~L~~ 1672 (1779)
|+.+|+++|++||+||++||+|++||++|||+|||+++++|||||||++|+++||+|||+||+|+++.+.+.++|++|++
T Consensus 1594 ~l~~l~~~L~~s~~fA~~fN~d~~lR~~l~~~g~~~~~~~PnLLkqE~~s~~~~l~il~~~~~d~~~~~~~~~~~~~l~~ 1673 (1780)
T PLN03076 1594 NTLVLFDALHTVASHAHKINSDTALRSKLQELGSMTQMQDPPLLRLENESYQICLTFLQNLILDKPPLAKEAEVESRLVE 1673 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcccCCCCchhhHhHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccccccccccccccCCCchhhhhhhhhhHHHHHHHHHhcCChHHHHhhhhhhHHHHHHHhcc
Q 000254 1673 LCQEVLQLYIETSNHGQTSESSASGQVRWLIPLGSGKRRELAARAPLIVATLQAICTLEETSFEKNLACFFPLLSSLISC 1752 (1779)
Q Consensus 1673 lc~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~aw~pvvv~iL~~l~~l~~~~F~~~~~~~ypll~~L~~~ 1752 (1779)
+|.+||++|++++..+|+++...+..++|++|++++++||++||+||||+||+||++|||++|++|+|.||||+|+|++|
T Consensus 1674 ~c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l~~~~f~~~~~~~y~l~~~l~~~ 1753 (1780)
T PLN03076 1674 LCEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCGLGDSSFEKNLVRFFPLLAGLISC 1753 (1780)
T ss_pred HHHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998555444445566899999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHhhhhhhhhhccC
Q 000254 1753 EHGSNEIQVALSDMLDASVGPILLRTC 1779 (1779)
Q Consensus 1753 ~~~~~elr~aL~~~f~~rvg~~~~~~~ 1779 (1779)
|+.++|||.||+.+|+.||||+++++|
T Consensus 1754 e~~~~e~r~~l~~~~~~rvg~~~~~~~ 1780 (1780)
T PLN03076 1754 EHGSNEVQVALSDMLSSWVGPVLLQSC 1780 (1780)
T ss_pred cCCCHHHHHHHHHHHHHHhhhhHhccC
Confidence 888899999999999769999999998
No 2
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-265 Score=2524.13 Aligned_cols=1511 Identities=51% Similarity=0.797 Sum_probs=1289.1
Q ss_pred cchHHHHHHHHhhhhccCChhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccChHHhHHHHHHH
Q 000254 12 QVVAPALEKIIKNASWRKHSKLAHECKSVLERLNSAQKQLPSSPTESETEGSTPGPLHDGGPNEYSLSESEFILSPLINA 91 (1779)
Q Consensus 12 ~~~~~~l~~i~~~~~~kk~~~l~~a~e~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pl~la 91 (1779)
++|.+++|||+++++||+|++|+++|+.+++.+++.. ++..+++.+|.||++|
T Consensus 1 ~~v~~~~~ki~~~~~~~~~s~l~~~~~~~~~~~~~~~---------------------------~~~~~~e~~~~p~~la 53 (1514)
T KOG0929|consen 1 MFVSSALEKILADAEWRKHSKLKKACKSALEELKANG---------------------------LSLAEAELYLLPFELA 53 (1514)
T ss_pred CCccccHHHHhhhhhhhhHHHHHHHHHHHHHhhhccc---------------------------CCCcchhhhhChHHhh
Confidence 5889999999999999999999999999999999832 1236789999999999
Q ss_pred hccCCcchHHHHHHHHHHHhhcCCccCCCCCCCCchhhHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHcccccccchh
Q 000254 92 CGTGFLKIADPALDCIQKMIAYGYLRGEADPTGGPEAKFLSKLIESVCKCHDLGDDAVELLVLKTLLSAVTSMSLRIHGD 171 (1779)
Q Consensus 92 c~sk~~ki~~~ALdcl~KLi~~~~~~~~~~~~~~~~~~li~~iv~~i~~c~~~td~~vqLqIlk~Lls~v~s~~~~vhg~ 171 (1779)
|+||++||+.+|+||+||||+||+++|++++.++|+..++++++++||.|++..||.+|||++|+||++|+++++++||+
T Consensus 54 ~~t~~~ki~~~~~dc~~kli~~~~l~g~~~~~~~~~~~l~~~~~~~vc~~~~~~~e~~elq~~k~lL~av~s~~~~i~~~ 133 (1514)
T KOG0929|consen 54 CDTKSPKIVSPALDCLQKLIAYGHLTGESNDSGGPEDLLIDKIIEAVCKCFDGLDESVELQVLKALLAAVTSQHIEIHGD 133 (1514)
T ss_pred cCCCCcchhccHHHHHHHHHHhhhccCCCCCCCCcchhHHHHHHhHhhhccCCCchhhhHhHHHHHHHHHhccceeecCc
Confidence 99999999999999999999999999999999999999999999999999777799999999999999999999999999
Q ss_pred hHHHHHHHHHhhhccccChhHHHHHHHHHHHHHHHHHhccccCCCCCCCcchhhhcccCCCCCCCccccchhhhcccccc
Q 000254 172 CLLQIVRTCYDIYLGSKNVINQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMDPMEKSDADRTMTMFVQGFITK 251 (1779)
Q Consensus 172 ~Ll~avrtcynI~l~sks~~nq~tA~atLtQmv~~VF~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1779)
+|+.+||||||||+.| ++||+||++||+||+++||.||+.+..... + +.+.+.+...+ +++..+.+|+++++
T Consensus 134 ~ll~~vr~c~~iyl~s--~~nq~~ak~~L~qml~~vf~~~e~~~~~~~-~-i~vs~~~~~~~----~~~s~~~~~~~i~~ 205 (1514)
T KOG0929|consen 134 SLLLIVRTCYNIYLGS--PINQTTAKATLTQMLNIVFRRMEEDSSDES-Q-ILVSELLRVSD----DPSSTEFVQQFIDS 205 (1514)
T ss_pred chHHHHHHHHHHHhcC--cccchHHHHHHHHHHHHHHHHhhhccCccc-c-cccccccccCC----CcchhHHHHHHHHH
Confidence 9999999999999999 999999999999999999999998865543 2 33444433332 33344566667666
Q ss_pred ccccccCCCCCcccccCCCCCCCcccccccCCCCccccCCcchhhhhhhhhHHHhhhhhhccCCCCccCCCCCCCchhhh
Q 000254 252 IMQDIDGLLTPENKVSLSGHDGAFETTTVETTNPADLLDSTDKDMLDAKYWEISMYKTALEGRKGELVDGEGERDDDLEV 331 (1779)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1779)
+++..++.+.. .+.. + +.+++.++..+.....+.+++...+...+.+.....
T Consensus 206 i~~~~~~~~~~---~~~~-----------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1514)
T KOG0929|consen 206 IMEVLVASPED---VGLT-----------------E--------MLDDNVNENSKTGDSLSLRDAESPESESERDDDSER 257 (1514)
T ss_pred HHHhccCCccc---cccc-----------------c--------ccccccccccccCcccccCcccccccccccCcchhh
Confidence 66544332100 0000 0 000001111111112233333222222233333345
Q ss_pred hhhhhhhhcHHHHHHHHHhccCCCCCCCCCCCchh-hhhHHHHHHHHHHHHHhCCccccCChHHHHHHHHHHHHHHHHhh
Q 000254 332 QIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQL-MRGKIVALELLKILLENAGAVFRTSDRFLGAIKQYLCLSLLKNS 410 (1779)
Q Consensus 332 ~~~~~~~~Da~lvfr~LC~Ls~k~~~~~~~~d~~~-~rsk~lsLeLl~~iL~~~~~~f~~~~~f~~~ik~~Lc~~Ll~n~ 410 (1779)
++.+.+++|||+|||+|||||||+.+.+ +.|+.. ||+|+++||||+.+|+++|++|+++..|+.+||||||.+|+||+
T Consensus 258 ~~~~~~~~Daflvfr~Lckls~k~~s~~-~~d~~s~~R~k~lsl~ll~~il~~~~~vf~s~~~fi~aikqyKOGalskn~ 336 (1514)
T KOG0929|consen 258 SSQNKLQRDAFLVFRALCKLSMKPLSSE-ESDTQSHMRSKLLSLELLKSILENSGSVFRSNEHFIDAIKQYLCLALSKNS 336 (1514)
T ss_pred ccccHHHHhHHHHHHHHHHhhCCCCCCC-CCChHHHHhhhHHHHHHHHHHHhccchhhcCchhhHHHHHHHHHHHHhhcc
Confidence 6668999999999999999999999876 445432 99999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhhChhHHHHHHHhcCCC
Q 000254 411 ASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLCIDSQILVDIFINYDCD 490 (1779)
Q Consensus 411 ~s~~~~vf~lsl~If~~L~~~~r~~LK~Eievf~~~i~l~ile~~~~~~~~qk~~vLe~l~~l~~~p~~lvely~NYDCd 490 (1779)
+|++++||+++|.|||.|+.+||.++|.||||||++|+++++|..++ +++||+++|..+.++|.|||.+||+|+|||||
T Consensus 337 vS~~~~vfe~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~-s~~qk~~~l~~~~~ic~d~q~~Vdi~vnydcd 415 (1514)
T KOG0929|consen 337 VSNVPMVFELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTS-SFQQKMMVLRILTRICADPQTLVDIYVNYDCD 415 (1514)
T ss_pred cccchHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCC-cccchhHHHHHHhhhcCCCccccccccCCccc
Confidence 99999999999999999999999999999999999999999999854 89999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHhhccCCCCCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHhhhccCCCCCCCCcchhhhccCCCC
Q 000254 491 VNSSNIFERMVNGLLKTAQGVPPSTATSLLPPQESTMKLEAMKCLVAILRSMGDWMNKQLRIPDPQSTKKFEAVENISSG 570 (1779)
Q Consensus 491 ~~~~nife~lv~~L~k~a~~~~~~~~~~~~~~q~~~l~~~~l~~lv~il~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (1779)
.+.+||||++++.++|+|+|. .+......|+||..+|..++.||+++++++..|.+++...+....++..... +
T Consensus 416 ~~~~nifer~v~~ltk~a~g~-~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~~~~~t~~~~~~~-----~ 489 (1514)
T KOG0929|consen 416 SNSQNIFERLVNGLSKIAQGR-TGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLNVEGVITGKKSSTT-----P 489 (1514)
T ss_pred cCCccHHHHHHhhHHHhhcCC-CccccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccccCCCcccCccccCc-----c
Confidence 999999999999999999994 4566778899999999999999999999999999875554433222111100 0
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHcCCCCCCHHHHHHH
Q 000254 571 PEPGTVPMANGNGDELVEGSDSHSEASSEISDVSTIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAF 650 (1779)
Q Consensus 571 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~l~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~f 650 (1779)
... ..+ ++ ..+...+++++++..|.+|. +++|+.+||.+|++||+||+++|+++.+|.+||+|
T Consensus 490 ~~~------~~~-------s~---~~~~~~~~~~q~e~~k~ek~-l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeF 552 (1514)
T KOG0929|consen 490 IEN------ELN-------SD---TQSNDADDPEQFEALKSEKQ-LQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEF 552 (1514)
T ss_pred hhh------hcc-------Cc---cccccccChhhhhhhhhhcc-hHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHH
Confidence 000 000 00 11223467889999999998 99999999999999999999999999999999999
Q ss_pred HhccCCCChhHHHhhhccCCchhHHHHHHHHhcCCCCCCChHHHHHHHhccCcCCCchHHHHHHHHHHHHHHhhhCCC-C
Q 000254 651 LKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPK-V 729 (1779)
Q Consensus 651 L~~~~~l~k~~igeylg~~~~~~~~vl~~~~~~~~f~~~~~~~aLR~fl~~f~lpgE~q~idri~e~Fa~~y~~~np~-~ 729 (1779)
|+.+.+|||+++|+|||+++++|++|||+||+.|||++++|++|||.||++||||||+|||||||++||+|||+|||+ .
T Consensus 553 L~~t~~l~kt~igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~l 632 (1514)
T KOG0929|consen 553 LIGTEGLSKTILGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTL 632 (1514)
T ss_pred HHhccCCCHHHHHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCChhHHHHHHHHHHHhcccCCCccccCCCCHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHhCcccccCcchHHHhhhhc
Q 000254 730 FTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQQMQSM 809 (1779)
Q Consensus 730 f~~~d~~y~laysiimLntdlhn~~~k~kmt~~~Fi~n~~gi~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~ 809 (1779)
|.|||+||+||||+||||||+|||++|+|||++|||+||||||+|+|+|++||+.+||+|..+||++.++...+...+..
T Consensus 633 FssADtaYVLAfSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s 712 (1514)
T KOG0929|consen 633 FSSADTAYVLAFSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESS 712 (1514)
T ss_pred CCCccchHHHHHHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988775555555
Q ss_pred ccccccccchhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHhhcccCCceeeccchHHHHHHHHHhHHHHHHHHhccccc
Q 000254 810 NSNRILGLDSILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYHAATDVVILRFMIEACWAPMLAAFSVPLDQ 889 (1779)
Q Consensus 810 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e~vr~Mfe~~W~piLaaLS~~l~~ 889 (1779)
+.++..+.++..+...+++....++... +..+++++++..+.||.++|.+|||+||+.+|+|++||++.+|+.
T Consensus 713 ~~~~~~~~~~~~~l~~~~r~~~~~~s~~-------~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~ 785 (1514)
T KOG0929|consen 713 NLPKLLGLTGILNLRSNSRMSAIDMSAS-------QSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQD 785 (1514)
T ss_pred cchhhhccccccccchhhhhhHHHhhhh-------HHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhc
Confidence 5566677777665544444332222111 345666666668999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCCCCccccchHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 000254 890 SDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILT 969 (1779)
Q Consensus 890 s~D~~~i~~~L~G~~~~i~Ia~~~~l~~~RDafl~sL~kfT~L~~~~~l~~Kni~alr~Ll~iA~~~G~~L~~sW~~IL~ 969 (1779)
++|..+...||+||+.++||+|.|+|+..||||+++|++||.++.+.+|+.||++++|+++.||.++||+|.++|.+|+.
T Consensus 786 sdd~~~~n~cl~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~~e~k~kNi~aik~l~~ia~t~gn~l~~sW~~Il~ 865 (1514)
T KOG0929|consen 786 SDDLEIANLCLDGFRLAISIASIFSMELGRDAFVQALARFTNLHAPSEMKQKNIDAIKALLEIADTDGNKLFDSWLDILK 865 (1514)
T ss_pred CCccccccccccchhheeeehhhhcCCccccHHHHHHHHHHhccCHHHHhHhhHHHHHHHHHHhhcccchhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCccccCCCcchhhhhccccccccccccCCCCchhhhHhhhccCCccCCCCCCCCCCCCCHHH
Q 000254 970 CVSRFEHLHLLGEGAPPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQYAAATVMRGAYDSAGIGGSASGVVTSEQ 1049 (1779)
Q Consensus 970 ~isqle~Lqli~~g~~~d~~~~~~p~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~t~~~ 1049 (1779)
|++|+|++|++++|++++...+.. +. + +. ....+|+++..+.++.........+
T Consensus 866 cisqlE~~qli~sg~~~~~~~~~~----s~-----~----~~-------------~~~~~~~~~~~~~~s~~e~~~~~~s 919 (1514)
T KOG0929|consen 866 CISQLEHTQLIGSGSPPNKLPFVV----SQ-----R----ED-------------YKKPGGSYDSSGDGSRIENVGEKSS 919 (1514)
T ss_pred HHHHHHHHHHhcCCCCcccCcchh----hh-----c----hh-------------ccCCcccccccccccchhccccchh
Confidence 999999999999999876433221 10 0 00 0001233433333222111111112
Q ss_pred HhhhhhhhhHHHhhhcchhhHHHHhcccCChHHHHHHHHHHHHhhHHhhhcCCCCceehHHHHHHHHhhcccccccchhh
Q 000254 1050 MNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSS 1129 (1779)
Q Consensus 1050 i~~~~~~~~vl~~i~s~~id~lF~~S~~L~~eai~~fv~ALc~vS~eel~~~~~pr~FsLqKLveV~~~Nm~Ri~l~W~~ 1129 (1779)
+. ++ .++|+||++|..++++||++|++|||+||++||.++++||+|+|||+|||++|||.|||++|++
T Consensus 920 ~s-------~v-----i~~d~Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s~~~PrlfslqK~VeIs~ynM~rIrl~ws~ 987 (1514)
T KOG0929|consen 920 VS-------VV-----IQMDRIFTSSQRLDSEAIVDFVKALCKVSMDELLSPSTPRLFSLQKLVEISYYNMNRIRLVWSR 987 (1514)
T ss_pred HH-------HH-----HHhhhhhcccccCCchHHHHHHHHHHHHHHHHhcCCCCCCeeecccceeeeccccccchhhHHH
Confidence 21 11 2579999999999999999999999999999999889999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHh
Q 000254 1130 IWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS 1209 (1779)
Q Consensus 1130 iW~~l~~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~ 1209 (1779)
||.++++||+.|||++|..|+.||+|+|||+.|||++++|+++|+||++||+||+++|.++.+++|||+|+||+.
T Consensus 988 iw~vlg~~F~~vg~~~n~~vaifa~DslRQlsmkfle~~el~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~----- 1062 (1514)
T KOG0929|consen 988 IWAVLGEFFVSVGCNSNESVAIFALDSLRQLSMKFLERSELDNFRFQKDFLRPFEHIMKRSSSAEIRELVVRCIS----- 1062 (1514)
T ss_pred HHHHhhhhhhccccCCCCceEEEehhhhHHhhhhhcchhhhhhhhHHHhhcCcchHHhhccCcchhHHHHHhhhh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccCcHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHHH
Q 000254 1210 RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAF 1289 (1779)
Q Consensus 1210 ~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~q~~~~niSL~AI~~ 1289 (1779)
++++|||+.||+|++.+|.+.++.+|..+|+++..|+++||..+.+++.++|.||+.||.+|+++....++|++||.+
T Consensus 1063 --~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~ 1140 (1514)
T KOG0929|consen 1063 --SNIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRF 1140 (1514)
T ss_pred --hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 899999999999999999999999999999999999999998888766699999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhccccccCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHH
Q 000254 1290 LRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQ 1369 (1779)
Q Consensus 1290 L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~~~~~lW~pLL~~L~~l~~d~R~eVR~~Alq 1369 (1779)
+|.|+.+++++ . +.+. . +.+ +.. +.+.|...|+|+|++|++++.|+|++||++|++
T Consensus 1141 lr~ca~k~~e~-~-~~~~---------~--------~~~--~~~---~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~ 1196 (1514)
T KOG0929|consen 1141 LRLCALKLAEG-V-YNEK---------L--------KVG--KDS---EFDVWNSGWFPMLFQLSKIINDYRLEVRKRALE 1196 (1514)
T ss_pred HHHHHHHhccc-c-chhh---------c--------ccc--ccc---ccccceeeeehhHhhhhHHhhccHHHHHHHHHH
Confidence 99999999876 1 1110 0 000 000 345688999999999999999999999999999
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 000254 1370 VLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKF 1449 (1779)
Q Consensus 1370 tLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~s~~~~~~~Wl~eT~~laL~~lv~lf~~y 1449 (1779)
+||+|+..||+.|+.+||+.+|+ +|||||+.++...+.+ +..+|++|||++||+.+++||++|
T Consensus 1197 vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~----------------~~~eW~~tT~~~Al~~~v~lf~~~ 1259 (1514)
T KOG0929|consen 1197 VLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDES----------------EKDEWLSTTCNHALQALVDLFTQF 1259 (1514)
T ss_pred HHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccchh----------------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999998765542 334499999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhcchhhhccCCcchhhhh
Q 000254 1450 YNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAKATLPDFSYLGSEDCMAEI 1529 (1779)
Q Consensus 1450 f~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~~~g~~f~~~~W~~i~~~l~~l~~~t~~~~~~~~~~~~~~~~ 1529 (1779)
|+.++.+|++++.+|.+||+|+|+++||+|++||++|+.+||.+|++++|+++++++.++|++|+|+++..|+.+.+...
T Consensus 1260 ~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~T~p~~l~~~~~~~~~~~ 1339 (1514)
T KOG0929|consen 1260 FKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKTTLPHELLTWRTMSDISS 1339 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHhcCcHHHhcccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988865433210
Q ss_pred hhcccccccCCCCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhhcc
Q 000254 1530 AAKGQINVESSGSGLPDDDSENLRTQHLFACIADAKCRAAVQLLLIQAVMEIYNMYRPCLSAKNTLVLFEALHDIAYHAH 1609 (1779)
Q Consensus 1530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kcv~QLlliq~~~el~~~~~~~L~~~~l~~Ll~~L~~s~~fA~ 1609 (1779)
+.+ +......+...+.....|.+ .++| .++.+||.+|+.+|+++|.++|+||+
T Consensus 1340 ----~~~-----------e~~~~~~~~v~~~~~~~k~~-----------~~~~-~~~~~l~~~~~~~l~d~l~~s~~fa~ 1392 (1514)
T KOG0929|consen 1340 ----EQN-----------ELSQTISNIVFYPATESKED-----------TDLL-GMYTSLSAQHLLKLLDILSESHEFAK 1392 (1514)
T ss_pred ----ccc-----------cccccccccccccccchHHH-----------HHHH-HHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 000 00000000111111123332 3444 77799999999999999999999999
Q ss_pred cCCCChhhHHHHHhhccCCCCCCCCchhhHHHhHHHHHHHHHHHHhCCCCCCcHHhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000254 1610 KINSDHPLRSKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILDRPPTYEEADVESHLVNLCQEVLQLYIETSNHGQ 1689 (1779)
Q Consensus 1610 ~fN~d~~LR~~L~k~g~~~~~~~PnLLkQE~~s~~~yl~iL~~l~~d~~~~~~~~~i~~~L~~lc~~il~~y~~l~~~~~ 1689 (1779)
+||+|++||++||++|.++++ |||||||++|+++||.|||+||.|+++.+ .+++++|+++|.+||++|+++..++
T Consensus 1393 ~fN~d~~lR~~l~~~~~~~~~--pnLL~qE~~s~~~~l~~lf~~~~~~~~~~--~~i~~~l~~~c~~~l~~y~~~~~~~- 1467 (1514)
T KOG0929|consen 1393 QFNSDYELRTKLWRAGKGSQK--PNLLRQETSSLACYLDILFRLLKDDPRVS--EEIESRLVTVCSEVLKGYLSLTSET- 1467 (1514)
T ss_pred HhcccHHHHHHHHHhcccCCC--cchhhHHHHHHHHHHHHHHHHhccCcccc--HHHHHHHHHHHHHHHHHHHhccccc-
Confidence 999999999999999965555 99999999999999999999999999877 8999999999999999999998753
Q ss_pred cccccccccccccccCCCchhhhhhhhhhHHHHHHHHHhcCChHHHHhhhhhhHHHHHHHhcccCCChhHHHHHHHHHhh
Q 000254 1690 TSESSASGQVRWLIPLGSGKRRELAARAPLIVATLQAICTLEETSFEKNLACFFPLLSSLISCEHGSNEIQVALSDMLDA 1769 (1779)
Q Consensus 1690 ~~~~~~~~~~~~~~p~~~~~~r~i~aw~pvvv~iL~~l~~l~~~~F~~~~~~~ypll~~L~~~~~~~~elr~aL~~~f~~ 1769 (1779)
+ +|| +.. +++.|..|+|.||++||+++.++. ++++|++++.|| .
T Consensus 1468 --------------------~---~a~----------~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~r~~~~~~~-l 1511 (1514)
T KOG0929|consen 1468 --------------------H---EAW----------LTP-SDEEFSARAPLYYALLCAMCAFDL-DPELRHLLRFFF-L 1511 (1514)
T ss_pred --------------------h---hhh----------cCC-cHHHHhccCchHHHHHHHHHHcCC-cHHHHHHHHHhh-h
Confidence 2 588 222 999999999999999999999994 569999999999 6
Q ss_pred hh
Q 000254 1770 SV 1771 (1779)
Q Consensus 1770 rv 1771 (1779)
||
T Consensus 1512 r~ 1513 (1514)
T KOG0929|consen 1512 RV 1513 (1514)
T ss_pred hc
Confidence 76
No 3
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-123 Score=1172.59 Aligned_cols=1217 Identities=25% Similarity=0.395 Sum_probs=868.5
Q ss_pred ccChHHhHHHHHHHhccC--CcchHHHHHHHHHHHhhcCCccCCCCCCCCchhhHHHHHHHHHhhc-c----CCCChhHH
Q 000254 78 LSESEFILSPLINACGTG--FLKIADPALDCIQKMIAYGYLRGEADPTGGPEAKFLSKLIESVCKC-H----DLGDDAVE 150 (1779)
Q Consensus 78 ~~~~~~i~~Pl~lac~sk--~~ki~~~ALdcl~KLi~~~~~~~~~~~~~~~~~~li~~iv~~i~~c-~----~~td~~vq 150 (1779)
..+|..|++||+....|. ++.|+..||+.++|.++|+.|+.+.+. -+..+..+++||++| + +.+||.|-
T Consensus 64 ~idp~~~L~PFL~vI~s~~~~g~iTslALssv~Kflt~~iid~~s~n----~~~am~~~v~AvthcRFe~td~~Sde~Vl 139 (1386)
T KOG0928|consen 64 TIDPLTYLSPFLEVIKSDETTGPITSLALSSVLKFLTLNIIDESSPN----AADAMRNIVDAVTHCRFEGTDPASDEVVL 139 (1386)
T ss_pred cCChHhHHhHHHHHHhcccCCccHHHHHHHHHHHHheeeecCccCcc----HHHHHHHHHHHHHheeeeccCccchhHHH
Confidence 478999999999999885 899999999999999999999887653 345699999999999 2 45789999
Q ss_pred HHHHHHHHHHHccccc-ccchhhHHHHHHHHHhhhc-cccChhHHHHHHHHHHHHHHHHHhccccCCCCCCCcchhhhcc
Q 000254 151 LLVLKTLLSAVTSMSL-RIHGDCLLQIVRTCYDIYL-GSKNVINQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAEL 228 (1779)
Q Consensus 151 LqIlk~Lls~v~s~~~-~vhg~~Ll~avrtcynI~l-~sks~~nq~tA~atLtQmv~~VF~r~~~~~~~~~~~~~~~~~~ 228 (1779)
|+|+|+|.++|.+|.. .+..+.++..|.||+++.. ..++.+.|.+|++|+.-|+..+|+|++.-+... +...
T Consensus 140 lkilqvLr~lm~sp~~~lLSnq~Ic~ivqTcl~v~~q~~lselLr~~Ae~Tm~~~~~~IFsrLk~~~~~~------~~~~ 213 (1386)
T KOG0928|consen 140 LKILQVLRSLMDSPAGALLSNQIICDIVQTCLRVVCQSRLSELLRKSAEHTMHDLTQLIFSRLKYIEPPY------VNEM 213 (1386)
T ss_pred HHHHHHHHHHHhCchhhhcchhHHHHHHHHHHHHHHHHhHHHHhhcchhhhHHHHHHHHHHhCccccccc------cchh
Confidence 9999999999999876 6899999999999999986 567999999999999999999999998653210 0110
Q ss_pred cCCCCCCCccccchhhhccccccccccccCCCCCcccccCCCCCCCcccccccCCCCccccCCcchhhhhhhhhHHHhhh
Q 000254 229 MDPMEKSDADRTMTMFVQGFITKIMQDIDGLLTPENKVSLSGHDGAFETTTVETTNPADLLDSTDKDMLDAKYWEISMYK 308 (1779)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1779)
.-..++..+. + ....++.+ ..++ .+..+... +.......+.....+... ...
T Consensus 214 ~~~~es~~~~--~--~~~~~i~~-----k~~e-----n~e~~~~~--~~a~~~~~~~~~~~~~~v-~~~----------- 265 (1386)
T KOG0928|consen 214 YINDESYQGN--V--LKDDFIGT-----KRVE-----NGEISSED--ESATFDDGSISEKFEVPV-QQV----------- 265 (1386)
T ss_pred hcchHhhhcc--c--ccccccCc-----ccCC-----CCCccCcc--cccccccccccccccCCc-ccc-----------
Confidence 0000000000 0 00000000 0000 00000000 000000000000000000 000
Q ss_pred hhhccCCCCccCCCCCCCchhhhhhhhhhhhcHHHHHHHHHhccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhCCccc
Q 000254 309 TALEGRKGELVDGEGERDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKIVALELLKILLENAGAVF 388 (1779)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Da~lvfr~LC~Ls~k~~~~~~~~d~~~~rsk~lsLeLl~~iL~~~~~~f 388 (1779)
.++.+..+...+.........+-+..+ -.|..||+|.+-..+.. .... ..+++|.||++.++-+|+.|
T Consensus 266 ----~~~~~~~~e~a~~~~~~~~~ygip~~~---~~~h~l~sl~~~~n~~~---~~es--~~~~~l~lin~aie~~g~~i 333 (1386)
T KOG0928|consen 266 ----DREQETDEENAEAMAAMDENYGIPVMK---DIFHFLLSLLNVTNTVA---HDES--VRSFALVLINSAIELGGDCI 333 (1386)
T ss_pred ----ccccCChhhhhhHhhcccccCCCceec---cchhhhhhhcccccccc---chhh--hhHHHHHHHHhhHhhcchHH
Confidence 000000000000000000000011233 35677888875532211 1122 36999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHhh-----ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 000254 389 RTSDRFLGAIKQYLCLSLLKNS-----ASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQK 463 (1779)
Q Consensus 389 ~~~~~f~~~ik~~Lc~~Ll~n~-----~s~~~~vf~lsl~If~~L~~~~r~~LK~Eievf~~~i~l~ile~~~~~~~~qk 463 (1779)
+.||.|+..|.+.+..+++..+ .|-.+.++++-+.+.++|..++|.++|.++|.||+.+..++......|+++||
T Consensus 334 ~~~prll~liqd~~fk~l~~~~~~~~k~s~~~~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~ 413 (1386)
T KOG0928|consen 334 REHPRLLRLIQDPLFKHLIEFLQIPTKMSLERLVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQ 413 (1386)
T ss_pred HHhhHHHHHhccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHH
Confidence 9999999999999999999988 67778899999999999999999999999999999999999888777899999
Q ss_pred HHHHHHHHHHhhChhHHHHHHHhcCCCCChhhHHHHHHHHHHhhccCCCCCCCCCCCCchhhhhhhhhHHHHHHHHHHHH
Q 000254 464 MIVLRFLEKLCIDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPSTATSLLPPQESTMKLEAMKCLVAILRSMG 543 (1779)
Q Consensus 464 ~~vLe~l~~l~~~p~~lvely~NYDCd~~~~nife~lv~~L~k~a~~~~~~~~~~~~~~q~~~l~~~~l~~lv~il~sl~ 543 (1779)
.++||.+..+|+.|.+++|+|+|||||++|.||||++++.|+|.|++.....++...++ ++|+. +.+|.
T Consensus 414 e~ale~lv~~~R~p~F~~e~yvNfDCd~~csnlfedl~k~LtknafP~sg~~tt~~i~~-------l~l~~----v~~l~ 482 (1386)
T KOG0928|consen 414 EVALEALVLLCRIPSFLTEMYVNFDCDLYCSNLFEDLIKLLTKNAFPVSGPLTTASILP-------LDLEG----VLGLA 482 (1386)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhcCCchhhhhhHHHHHHHHHHccCCcccccccccccc-------hHHHH----HHHHH
Confidence 99999999999999999999999999999999999999999999986532222222222 12333 34444
Q ss_pred HHhhhccCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHHh
Q 000254 544 DWMNKQLRIPDPQSTKKFEAVENISSGPEPGTVPMANGNGDELVEGSDSHSEASSEISDVSTIEQRRAYKLELQEGISLF 623 (1779)
Q Consensus 544 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~l~~~~~~F 623 (1779)
+.+.......+ . .++..... ..+.. +-+.|++|+++..|+++|
T Consensus 483 e~~~~~l~~~d----------------~----~ef~~~k~----------------e~~v~-~iR~rk~K~~li~gae~F 525 (1386)
T KOG0928|consen 483 ENMIDELQDSD----------------R----EEFWTDKC----------------EVWVL-FIRSRKRKRELILGAELF 525 (1386)
T ss_pred HHHHhhccccC----------------c----CccccCCc----------------chhhh-hhccchhhHHHHHHHHHh
Confidence 43332211000 0 00000000 01112 222333799999999999
Q ss_pred ccCchhhHHHHHHcCCCC--CCHHHHHHHHhccCCCChhHHHhhhccCCchhHHHHHHHHhcCCCCCCChHHHHHHHhcc
Q 000254 624 NRKPKKGIEFLINAKKVG--NTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLG 701 (1779)
Q Consensus 624 n~~p~~gi~~l~~~~~~~--~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~~~~~~~f~~~~~~~aLR~fl~~ 701 (1779)
|++|||||+||+++|+|+ .+|..+|.||+++++|||++||+|||++++ .+||++|++.|||+||++|+|||.||++
T Consensus 526 Ne~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~--~~vLn~Fi~tFdF~gmrlDeALRl~L~s 603 (1386)
T KOG0928|consen 526 NEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKN--VSVLNEFIGTFDFQGMRLDEALRLFLES 603 (1386)
T ss_pred ccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcch--HHHHHHHHHhcCcCCCcHHHHHHHHHHH
Confidence 999999999999999999 489999999999999999999999999987 7999999999999999999999999999
Q ss_pred CcCCCchHHHHHHHHHHHHHHhhhCC-CCCCChhHHHHHHHHHHHhcccCCCccccCCCCHHHHHHhhcCCCCCCCCcHH
Q 000254 702 FRLPGEAQKIDRIMEKFAERYCKCNP-KVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEE 780 (1779)
Q Consensus 702 f~lpgE~q~idri~e~Fa~~y~~~np-~~f~~~d~~y~laysiimLntdlhn~~~k~kmt~~~Fi~n~~gi~~~~~~~~~ 780 (1779)
||||||+|+|+|+||+||+|||++|+ +.|+++|+||+|||||||||||+||||||+|||.+||+||+||+|+|+|||++
T Consensus 604 FRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~g~DFpre 683 (1386)
T KOG0928|consen 604 FRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGINGGKDFPRE 683 (1386)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhcccccCCCCCCHH
Confidence 99999999999999999999999887 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCcccccCcchHHHhhhhcccccccccchhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHhhcccCCcee
Q 000254 781 YLRSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYH 860 (1779)
Q Consensus 781 ~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 860 (1779)
||.+||++|+.+||+||+++++.... ..+.|+. ++ .++...+.-+.
T Consensus 684 yLseiY~SIk~~EIvmPee~hG~~~~----------~~~~W~~----------------L~--------~~sktt~~~~~ 729 (1386)
T KOG0928|consen 684 YLSEIYQSIKTNEIVMPEEHHGTEEM----------FEYRWIN----------------LI--------SRSKTTEPFIL 729 (1386)
T ss_pred HHHHHHHHHhhcceecccccCCchhh----------hHHHHHH----------------HH--------hcccccCceee
Confidence 99999999999999999887653221 1111221 11 12222334445
Q ss_pred eccchHHHHHHHHHhHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCCCCc---
Q 000254 861 AATDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSLHSPAD--- 937 (1779)
Q Consensus 861 ~~~~~e~vr~Mfe~~W~piLaaLS~~l~~s~D~~~i~~~L~G~~~~i~Ia~~~~l~~~RDafl~sL~kfT~L~~~~~--- 937 (1779)
......+.|.||..+|+|++||++++|+.++++++.+.|++|+++|+.|++.||+.+..|..+.+|||||.|.+|..
T Consensus 730 ~~~~~~~drdlF~~v~gp~iaals~vFd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~e 809 (1386)
T KOG0928|consen 730 RDFTLVYDRDLFAMVWGPIIAALSYVFDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPE 809 (1386)
T ss_pred ccchhhhhHHHHHHHccchHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCch
Confidence 55566789999999999999999999999999999999999999999999999999999999999999999976652
Q ss_pred -c------ccchHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHhhcCCCCCCCccccC-CCcchhhhhccccccc
Q 000254 938 -I------KQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAF-PQSESEKSKQAKSTIL 1009 (1779)
Q Consensus 938 -l------~~Kni~alr~Ll~iA~~~G~~L~~sW~~IL~~isqle~Lqli~~g~~~d~~~~~~-p~~~~~~~~~~~s~~~ 1009 (1779)
+ ..|--.|..+++-+|+..|++++.+|+.|++|+.+|.+++++...+.++..+... +...... .++.. .
T Consensus 810 el~~~fged~ka~~At~tvf~~~n~~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~~~~~~~~-~~~~~--~ 886 (1386)
T KOG0928|consen 810 ELVLAFGEDTKARMATLTVFFGANKFGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPELLKLNKLP-VPQQE--I 886 (1386)
T ss_pred HHHHHhcccchhHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccccccCCCC-CCccc--c
Confidence 1 2466789999999999999999999999999999999999987665444333210 0000000 00000 0
Q ss_pred cccccCCCCchhhhHhhhccCCccCCCCCCCCCCCCCHHHHhhhhhhhhHHHhhhcchhhHHHHhcccCChHHHHHHHHH
Q 000254 1010 PVLKKKGPGRIQYAAATVMRGAYDSAGIGGSASGVVTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKA 1089 (1779)
Q Consensus 1010 p~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~~~t~~~i~~~~~~~~vl~~i~s~~id~lF~~S~~L~~eai~~fv~A 1089 (1779)
| .++ +.. ...-..+.++|.+ +.+....+.+|++++.....+. +||.+|.++.+|++|+.|..+++.+++++
T Consensus 887 ~-~~k--~~~--ss~Lls~fs~~Ls-~d~e~~~~~Ptee~l~~~~~a~---~cIk~c~i~~if~~s~~l~~~~l~~Ll~S 957 (1386)
T KOG0928|consen 887 S-INK--PRK--SSGLLSRFSSYLS-GDEEEERPCPTEEELSASKKAL---ECIKECHIDQIFTKSKFLQAKSLLTLLKS 957 (1386)
T ss_pred C-ccc--ccc--cchHHHHHHHhcC-CcccccCCCCcHHHHhhhHHHh---hHHHhcCHHHHhhhcccccHHHHHHHHHH
Confidence 0 000 000 0001111222322 2233456779999998776655 55667899999999999999999999999
Q ss_pred HHHhhHHhhhcCCCCceehHHHHHHHHhhcccccccchhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhchhh
Q 000254 1090 LCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREE 1169 (1779)
Q Consensus 1090 Lc~vS~eel~~~~~pr~FsLqKLveV~~~Nm~Ri~l~W~~iW~~l~~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eE 1169 (1779)
|...+...-...++.+.|++++|+.|...|.+||.+.|....+++-.-|+..-..+. .....|+-.+..++.|.+..+|
T Consensus 958 li~~s~~~s~~de~s~~F~lElli~I~l~nrdri~l~w~~~~e~ll~~~~~~~~~~~-~lvek~v~gl~rv~~rll~yk~ 1036 (1386)
T KOG0928|consen 958 LIAASNDLSMEDEESAVFCLELLIAITLSNRDRILLSWFAVYEHLLGLLIQTLMGSP-LLVEKAVSGLLRVVNRLLPYKE 1036 (1386)
T ss_pred HHHhcCCccCcccchHHHHHHHHHHHHhccccceEeeehhhHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHhhhhh
Confidence 999886531112567899999999999999999999998887777666654322222 3344566667778888888543
Q ss_pred hhhhhhhhhhhhhHHHHHhhcC--hHHHHHHHHHHHHHHHHhcccccc--cCcHHHHHHHHHhhcccchhHHHHHHHHHH
Q 000254 1170 LANYNFQNEFMKPFVIVMRKSN--AVEIRELIIRCVSQMVLSRVNNVK--SGWKSMFMVFTTAAYDDHKNIVLLAFEIIE 1245 (1779)
Q Consensus 1170 L~~~~FQ~~fL~Pfe~im~~~~--~~eVre~vL~cl~qmi~~~~~~Ik--SGW~~IF~iL~~aa~~~~~~lV~~aF~~l~ 1245 (1779)
..-.++++++..+....+ ....-+.+---+.+++.+...++. .||.++|..|..++. ++..-..+|..+.
T Consensus 1037 ----~l~d~l~~sl~~ll~L~~ki~d~~~~ki~i~~~~lv~~n~~~v~~~~~w~~~~slL~~~~~--h~~a~~~~~~~~l 1110 (1386)
T KOG0928|consen 1037 ----FLSDELLDSLRILLKLDPKILDAFLDKIAIFVSKLVKANAANVHSKDGWALLFSLLELTAR--HPEADFLKFYRLL 1110 (1386)
T ss_pred ----hhhHHHhhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhc--CCchhHHHHHHHH
Confidence 234567788877654432 234556666677888888888775 599999999999887 5555556666666
Q ss_pred HHHhhccCcccccccccHHHHHHHHHHHHhCCCCc-cccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCc
Q 000254 1246 KIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNK-DISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRP 1324 (1779)
Q Consensus 1246 ~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~q~~~~-niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 1324 (1779)
..+.|--+ ++ ++.|..||+|...|+.....+ .-++..++ ..+...... .++. ...
T Consensus 1111 ~~m~e~~h-l~---~~~fe~~v~~~~~fve~~~~~~~~~l~~ld-------e~s~sg~~~-~kw~---~~~--------- 1166 (1386)
T KOG0928|consen 1111 SKMSEASH-LT---PDNFELYVDCGSTFVEARVGQIMRSLSLLD-------EMSSSGEVL-DKWE---IEA--------- 1166 (1386)
T ss_pred HHhhcccc-CC---hHHHHHHHHHHHHHHHHHHHHHHHhcchhh-------hhcccccch-hHHH---HHH---------
Confidence 55555433 43 689999999999998653210 11111111 111110000 0000 000
Q ss_pred hhhhhcccc-ccCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhh
Q 000254 1325 VKELKLENG-EMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVR 1403 (1779)
Q Consensus 1325 ~~~~~~~~~-~~~d~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~ 1403 (1779)
+....+.. ...+.......|.+|+..+.++|.++|.+||+.||+.|.+++..-+..+.+..|..||+.|+||+++.+.
T Consensus 1167 -~~~~~~~~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~~~~~~q~l~~~~~~~Cf~~vlfpll~~l~ 1245 (1386)
T KOG0928|consen 1167 -KNATESGDESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRIIGALDQGLAHSYWNPCFDLVLFPLLTDLL 1245 (1386)
T ss_pred -hhhhcccccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhHHHHHHHH
Confidence 00000000 0111222345999999999999999999999999999999888889999999999999999999999987
Q ss_pred hccCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHhcc-----c
Q 000254 1404 HTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNP------LLRKVLMLLVSFIKRP-----H 1472 (1779)
Q Consensus 1404 ~~~~~~~~~~~~~~~~~~s~~~~~~~Wl~eT~~laL~~lv~lf~~yf~~l~~------~l~~~l~lL~~~i~q~-----~ 1472 (1779)
......+. ... -+..|..++.+.++++|.+|+..+.. +|-.+++.+..++.-. .
T Consensus 1246 ~~l~~~~~------------~~~---~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~Lwl~~ld~m~~l~~~~~~e~~~ 1310 (1386)
T KOG0928|consen 1246 ELLSDASE------------KGN---EMEVTLLLATKLLSKVFLQELQDLSSLSMFSTLWLGVLDRMEKLMRGKTSEETS 1310 (1386)
T ss_pred HHhccccc------------ccc---hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 64332210 111 36789999999999999999987763 4556666666666432 2
Q ss_pred hhHHHHHHHHHHHHH
Q 000254 1473 QSLAGIGIAAFVRLM 1487 (1779)
Q Consensus 1473 e~lArig~s~l~~ll 1487 (1779)
+.+-.+....++..+
T Consensus 1311 ~~l~e~~pe~l~~~~ 1325 (1386)
T KOG0928|consen 1311 DKLNEIVPELLKNML 1325 (1386)
T ss_pred hhHHhhhhhhhhhhh
Confidence 344444444444443
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=8.3e-88 Score=871.12 Aligned_cols=993 Identities=25% Similarity=0.358 Sum_probs=751.0
Q ss_pred HHHHHhccCCCCCCCCCC--CchhhhhHHHHHHHHHHHHHhCCccccCChHHHHHHHHHHHHHHHHhhccChhHHHHHHH
Q 000254 345 FRALCKLSMKTPPKEALA--DPQLMRGKIVALELLKILLENAGAVFRTSDRFLGAIKQYLCLSLLKNSASTLMIVFQLSC 422 (1779)
Q Consensus 345 fr~LC~Ls~k~~~~~~~~--d~~~~rsk~lsLeLl~~iL~~~~~~f~~~~~f~~~ik~~Lc~~Ll~n~~s~~~~vf~lsl 422 (1779)
+|.+|+...+..+..+.. ..+.+|+++.+|++++++|..+. .|+.++++|+|..+.++++|+.++||+.++
T Consensus 1 ~~~~~~~~i~~~~~~~~~n~~s~~~r~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~~~a~s~~~~v~~v~~ 73 (1024)
T COG5307 1 KRVLLVSQISNAPLKNSSNAPSQAVRSKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLSLSARSPLLPVFEVGL 73 (1024)
T ss_pred CchHHHHHHhhccccccccchhhhcccccccccchHHHhccch-------HHHHHhcchhhhhhhhcccccchhhhhhhH
Confidence 467888877654443333 35799999999999999999865 699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhhChhHHHHHHHhcCCCCC-hhhHHHHHH
Q 000254 423 SIFMSLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLCIDSQILVDIFINYDCDVN-SSNIFERMV 501 (1779)
Q Consensus 423 ~If~~L~~~~r~~LK~Eievf~~~i~l~ile~~~~~~~~qk~~vLe~l~~l~~~p~~lvely~NYDCd~~-~~nife~lv 501 (1779)
.|+|.++..++.++|.|+++||..+++++++.. +++..||..-|-..+++|..|+ ++.|+||||... ..|++++..
T Consensus 74 ~i~~~~~~~~~~~f~~~~~~~f~s~~f~i~~~~-~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~ 150 (1024)
T COG5307 74 EIIGLRLSNLPKLFKLESSVFFISIYFPISHTT-STSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTA 150 (1024)
T ss_pred HHHHHHHhhhhhhhhhccchHHHHHhhhhhccc-ccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccC
Confidence 999999999999999999999999999999988 6778999999999999999999 999999999987 899999999
Q ss_pred HHHHhhccCCCCCC---------CCC-CC------CchhhhhhhhhHHHHHHHHHHHHHHhhhccCCCCCC-CCcchhhh
Q 000254 502 NGLLKTAQGVPPST---------ATS-LL------PPQESTMKLEAMKCLVAILRSMGDWMNKQLRIPDPQ-STKKFEAV 564 (1779)
Q Consensus 502 ~~L~k~a~~~~~~~---------~~~-~~------~~q~~~l~~~~l~~lv~il~sl~~w~~~~~~~~~~~-~~~~~~~~ 564 (1779)
..+++.+...|+.. ..+ .. ..-+...+.....|.+.+++++.. ..+. +... ..++...
T Consensus 151 ~~~s~~~t~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~---~sl~-~s~~~~~~~~~~- 225 (1024)
T COG5307 151 FPLSRPSTNDPPETRSLIIEQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTK---NSLV-PSAYYTNKDVPP- 225 (1024)
T ss_pred CccccccccCCCcchhhhhhhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhh---cccc-hhhhhcccCCCC-
Confidence 99998886554421 000 11 123667889999999999998873 1111 0000 0000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcccC-C--CCCCCCCcCCCChhHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHcCCCC
Q 000254 565 ENISSGPEPGTVPMANGNGDELVEG-S--DSHSEASSEISDVSTIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVG 641 (1779)
Q Consensus 565 ~~~~~~~~~~s~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~e~~k~~K~~l~~~~~~Fn~~p~~gi~~l~~~~~~~ 641 (1779)
.+ .++. ...++..... . ...++.....+..-.....|++|..+++++..||.+|++||..|.+.+++.
T Consensus 226 --~s--~e~~-----~~~~~~~~~~~~~~~~d~~s~~~~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~ 296 (1024)
T COG5307 226 --LS--GEGL-----VSGSKSMVNSMKNSSRDSSSFVNSDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFID 296 (1024)
T ss_pred --cc--cchh-----hhcCCcccccccccccChhhhccchHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCC
Confidence 00 0000 0000000000 0 000000000011112233688999999999999999999999999999998
Q ss_pred C-CHHHHHHHHhccCC-CChhHHHhhhccCCchhHHHHHHHHhcCCCCCCChHHHHHHHhccCcCCCchHHHHHHHHHHH
Q 000254 642 N-TPEEIAAFLKNASD-LNKTLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFA 719 (1779)
Q Consensus 642 ~-~p~~ia~fL~~~~~-l~k~~igeylg~~~~~~~~vl~~~~~~~~f~~~~~~~aLR~fl~~f~lpgE~q~idri~e~Fa 719 (1779)
. ++.++|.||..+.+ +||+.+|+|||++++.|..||++|++.|||+|++||+|||.||+.||||||+|+||||||+||
T Consensus 297 ~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~kn~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS 376 (1024)
T COG5307 297 SDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDKNNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFS 376 (1024)
T ss_pred cccchHHHHHHHhccCcccHHHHHHHhcCCchhHHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHH
Confidence 4 79999999998877 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCCCh-hHHHHHHHHHHHhcccCCCccccCCCCHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHhCcccccC
Q 000254 720 ERYCKCNPKVFTSA-DTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKG 798 (1779)
Q Consensus 720 ~~y~~~np~~f~~~-d~~y~laysiimLntdlhn~~~k~kmt~~~Fi~n~~gi~~~~~~~~~~L~~iY~~I~~~~i~~~~ 798 (1779)
.+||+|||..|.++ |+||+||||+||||||+|||++|+|||++||++|++|+|+|++||++||+++|++|+++||++++
T Consensus 377 ~~Y~~~Np~~~~~~~D~vyiLafSlimLNTDlHNp~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e 456 (1024)
T COG5307 377 DKYYSDNPKKFSSKPDSVYILAFSLIMLNTDLHNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPE 456 (1024)
T ss_pred HHHHHhCcccccCccceeehhHHHHHHHhccccChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchh
Confidence 99999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHhhhhcccccccccchhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHhhcccCCceeeccchHHHHHHHHHhHHH
Q 000254 799 DDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIRHMQEQFKEKARKSESVYHAATDVVILRFMIEACWAP 878 (1779)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e~vr~Mfe~~W~p 878 (1779)
++...........+. .++.. ..+ . .+ .++......+.+.+|+.+|++.+|++
T Consensus 457 ~~~~~~~~~~~~~~~---~~ss~-----------------~~~---~-~~----~rd~~~~~~~~~f~~v~~~~et~~~~ 508 (1024)
T COG5307 457 EHHSSETSPEDNWPS---LDSSF-----------------TNI---A-EF----GRDNQRVADATHFDHVGPIFETSLFP 508 (1024)
T ss_pred hcccccccccccchh---hhhhh-----------------hhh---h-hc----ccccccchhHhhhhhcchHHHHHHHH
Confidence 886432211111000 00000 000 0 00 01112222456788999999999999
Q ss_pred HHHHHhcccccCChHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCCCCccccchHHHHHHHHHHHHhcCC
Q 000254 879 MLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGN 958 (1779)
Q Consensus 879 iLaaLS~~l~~s~D~~~i~~~L~G~~~~i~Ia~~~~l~~~RDafl~sL~kfT~L~~~~~l~~Kni~alr~Ll~iA~~~G~ 958 (1779)
++++++..+..++....+..|.+ +|+.|++..+|++|+.+++++|.+++.. ...|+
T Consensus 509 i~~s~s~~~~~s~~~~si~~~~~-------ia~~f~~n~p~~~~~~~~s~~t~l~~~S-----------------~~~~~ 564 (1024)
T COG5307 509 ILMSASDDLYSSDGVVSISKCTR-------IAANFDFNDPRDAFLESLSEFTTLINSS-----------------VSEGP 564 (1024)
T ss_pred HHhhhcchhcccccchHhhcccc-------hhhcceecchhHHHHHHhhccCCccccC-----------------ccccc
Confidence 99999999999988877776655 9999999999999999999999987533 67899
Q ss_pred chhhhHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCcchhhhhccccccccccccCCCCchhhhHhhhcc-CCccCCCC
Q 000254 959 YLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQYAAATVMR-GAYDSAGI 1037 (1779)
Q Consensus 959 ~L~~sW~~IL~~isqle~Lqli~~g~~~d~~~~~~p~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~~~~-~s~~s~~~ 1037 (1779)
++...|..++.+++++++.+.++.|.. + .+ +.+....- ..+ ...+...+++ ......... ..+.....
T Consensus 565 ~~~~~~~d~~~~is~~~~~~~i~~~~~-~--ql--~~v~~~~~-~~k-~~~~~i~~s~----~~~~i~~~~~~~~~~~l~ 633 (1024)
T COG5307 565 YLFIPSEDSLLSISVLELAARIGRGFE-D--QL--SDVKLFRL-RSK-SGNKEILSSS----LLSNIENKSLKLYLSSLI 633 (1024)
T ss_pred cccCccccccchhhHHHHHHHhcccch-h--hc--chhHHhHH-hhc-cccccccchh----hhhhhhhhHhhhhhhhhc
Confidence 999999999999999999999998762 1 11 11100000 000 0000000000 000000000 00000000
Q ss_pred CCCCCCCCCHHHHhhhhhhhhHHHhhhcchhhHHHHhcccCCh-HHHHHHHHHHHHhhHHhhhcCCCCceehHHHHHHHH
Q 000254 1038 GGSASGVVTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNS-EAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIA 1116 (1779)
Q Consensus 1038 ~~~~~~~~t~~~i~~~~~~~~vl~~i~s~~id~lF~~S~~L~~-eai~~fv~ALc~vS~eel~~~~~pr~FsLqKLveV~ 1116 (1779)
... ....+.....+ ...++. ...++++...+.++. .++++++++++... + ..| .+|+.++++
T Consensus 634 ~~~--~~~~~~~~~~~-~~~~~~-----~~~~~i~~~~s~~s~~~~~l~~~k~~~~~d---~---~~~---~~q~~v~~s 696 (1024)
T COG5307 634 EDG--KHFSPSIVKKL-GSPELP-----KLNPDISSGKSKLSVWSAVLSVFKAILSSD---L---PSP---PLQKEVDIS 696 (1024)
T ss_pred CCC--ccccccccccc-cCcccc-----ccCcccccccccccccchHHHHHHHHHhcc---C---CCC---CcHHhhhHH
Confidence 000 00011000000 001111 124788999999998 89999999999822 1 123 899999999
Q ss_pred hhcccccccchhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcChHHHH
Q 000254 1117 HYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIR 1196 (1779)
Q Consensus 1117 ~~Nm~Ri~l~W~~iW~~l~~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVr 1196 (1779)
++||.||+.+ ..||+++...+..++++.+..+..+++++.+|+.++|++.+|+.++.||..|+.|+++.+.......|+
T Consensus 697 ~~n~~~i~~~-~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~iee~~~~~f~~~~~~~~~~~~~~~~~~~v~ 775 (1024)
T COG5307 697 KKNVDIIKSE-SKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIEELSDFGFQIALLLPFEYSVEVSLVVAVK 775 (1024)
T ss_pred hhhhhhhhhh-hHHHhhcccchhhccccccccchhcccchhhhhccccCChhhhcchhHHHHHhccccccccccceeeee
Confidence 9999999987 999999999999999999999999999999999999999999999999999999999988888889999
Q ss_pred HHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhC
Q 000254 1197 ELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNS 1276 (1779)
Q Consensus 1197 e~vL~cl~qmi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~q 1276 (1779)
++.+.|..++++.+...+.+| +++|.++..+..... ++..++.+.. .|. +.. ..++|.+++.+-.....+
T Consensus 776 ~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~~~---~~~~~s~~~~--~e~---v~s-~~n~f~~~~~~~~~~~~~ 845 (1024)
T COG5307 776 ELVIGCSDNLLTEAASSIASG-KTIFEISAYEDLSST---LRYILSSLSN--DEL---VLS-QENLFIELLSSKNEGKQN 845 (1024)
T ss_pred eeehhhHHHHHHHHHHhhhcc-ccceeeeecccccch---hhhHHHHhcc--hhh---hhC-hhhHHHHHHhhhHHHHHh
Confidence 999999999999999999999 999999987654322 4555554432 122 211 137899999998888888
Q ss_pred CCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhccccccCCcchhhhhHHHHHHHHhhhc
Q 000254 1277 RFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELS 1356 (1779)
Q Consensus 1277 ~~~~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~~~~~lW~pLL~~L~~l~ 1356 (1779)
..++.+.+.++++++.....+.. |. +...... .+.-..+.|+++|.++.++.
T Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~----wk----------------------~~~~~~~--~~~~~~~~~~~~l~~~~~i~ 897 (1024)
T COG5307 846 DKNLELRLHSVDYLRFLLPNVEN----WK----------------------NLSSVLS--ANSNFSKDIFSYLEKYVKIG 897 (1024)
T ss_pred ccchhhhhccHHHHHHHhHHHHH----HH----------------------HHHHHHH--hhhhhhHHHHHHHHHHHHhc
Confidence 88888999999988765554332 10 0000000 11112578999999999987
Q ss_pred C-CCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 000254 1357 F-DPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETC 1435 (1779)
Q Consensus 1357 ~-d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~s~~~~~~~Wl~eT~ 1435 (1779)
. -...++ |..+..++..|...+|+.+++.-++|++....-...... . +. +++..-.|..++.
T Consensus 898 ~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~--~----~~---~~~~~~~~~~~~~ 960 (1024)
T COG5307 898 SSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSDKT--N----LD---NDEIELVWASTDL 960 (1024)
T ss_pred hhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCccccc--c----cc---chHHHHHHHHHHH
Confidence 4 567777 999999999999999999999999999987643211100 0 11 2467789999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 000254 1436 TLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAA 1510 (1779)
Q Consensus 1436 ~laL~~lv~lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~~~g~~f~~~~W~~i~~~l~~l~ 1510 (1779)
..|+...+.+|..+|+.+. ++.+.+.++..| .+|.+++...+...|.+-.|+++-..+.++|
T Consensus 961 l~~l~~~~~~~~~~~e~~~-~~~~~~~l~~~c------------~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~ 1022 (1024)
T COG5307 961 LAALKEFIELFNSIFEKLE-ILAGKLILLHQC------------LNNCDQLGLGAIETLEEILWNKIDVPTNELF 1022 (1024)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh------------cCcHhhhhhhhHHHHhhhhHHHhhcccchhc
Confidence 9999999999999999999 999999999999 6788888888888898889999988777665
No 5
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.6e-63 Score=620.88 Aligned_cols=995 Identities=18% Similarity=0.228 Sum_probs=646.9
Q ss_pred HHHHHHHHhhhhccCChhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccChHHhHHHHHHHhcc
Q 000254 15 APALEKIIKNASWRKHSKLAHECKSVLERLNSAQKQLPSSPTESETEGSTPGPLHDGGPNEYSLSESEFILSPLINACGT 94 (1779)
Q Consensus 15 ~~~l~~i~~~~~~kk~~~l~~a~e~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pl~lac~s 94 (1779)
-..|+.|.++ ++|||+++|+|+++++..|++....... +. .+ . ..-+.++.||++||++
T Consensus 16 ~adLrsLsse-ArkKnn~VK~aAdkSi~~Lr~isS~s~d---------s~--vl-e--------t~~edf~~PfllaC~s 74 (1610)
T KOG1848|consen 16 LADLRSLSSE-ARKKNNEVKLAADKSIQELRQISSASRD---------SD--VL-E--------TPNEDFLVPFLLACIS 74 (1610)
T ss_pred HHHHHHhhHH-HHhhchHHHHHHHhHHHHHHhhcccccc---------cc--cc-c--------cCCcccccceeeeccc
Confidence 3456677776 8999999999999999999987621110 00 00 0 1146899999999999
Q ss_pred CCcchHHHHHHHHHHHhhcCCccCCCCCCCCchhhHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHcccccccchhhHH
Q 000254 95 GFLKIADPALDCIQKMIAYGYLRGEADPTGGPEAKFLSKLIESVCKCHDLGDDAVELLVLKTLLSAVTSMSLRIHGDCLL 174 (1779)
Q Consensus 95 k~~ki~~~ALdcl~KLi~~~~~~~~~~~~~~~~~~li~~iv~~i~~c~~~td~~vqLqIlk~Lls~v~s~~~~vhg~~Ll 174 (1779)
|++|.+.+||.|||||+.|..++... ....++.-+.+... .+.+||++||+.+-+++++-.-+.|..++
T Consensus 75 r~tRl~~ials~iQkL~~~dsleps~------~aeildn~L~a~~q-----ae~~QLrvLQtiPii~~syl~fi~~p~l~ 143 (1610)
T KOG1848|consen 75 RNTRLFVIALSCIQKLGRHDSLEPSV------TAEILDNNLWAAAQ-----AEWIQLRVLQTIPIIFFSYLTFITGPPLL 143 (1610)
T ss_pred CcccceeeHHHHHHHHhccCCCCCcc------cHHHHHHHHHHHHH-----HHHHHHhhhccccceeeeceeeccCcHHH
Confidence 99999999999999999999996531 12334444444443 26699999999999999987779999999
Q ss_pred HHHHHHHhhhccccChhHHHHHHHHHHHHHHHHHhccccCCCCCCCcchhhhcccCCCCCCCccccchhhhccccccccc
Q 000254 175 QIVRTCYDIYLGSKNVINQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMDPMEKSDADRTMTMFVQGFITKIMQ 254 (1779)
Q Consensus 175 ~avrtcynI~l~sks~~nq~tA~atLtQmv~~VF~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1779)
++++.|||++- .+++++-++|.||++|+|..||+||..++...+ .. -+...
T Consensus 144 kll~iCfnLl~-~knkvV~NaAaAtlrQlV~~vFdrv~ies~~~d--------------~~--------------l~sl~ 194 (1610)
T KOG1848|consen 144 KLLIICFNLLY-QKNKVVFNAAAATLRQLVLLVFDRVPIESDAFD--------------FI--------------LPSLT 194 (1610)
T ss_pred HHHHHHHHHHc-CCCcceechhHHHHHHHHHHHHHhccccccccc--------------cc--------------chhhh
Confidence 99999999987 677799999999999999999999984421100 00 00000
Q ss_pred cccCCCCCcccccCCCCCCCcccccccCCCCccccCCcchhhhhhhhhHHHhhhhhhccCCCCccCCCCCCCchhhhhhh
Q 000254 255 DIDGLLTPENKVSLSGHDGAFETTTVETTNPADLLDSTDKDMLDAKYWEISMYKTALEGRKGELVDGEGERDDDLEVQIG 334 (1779)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1779)
.. .. +... ++ ...-.
T Consensus 195 ~~--s~---------------------t~sl----------------------------------~a--------a~~~~ 209 (1610)
T KOG1848|consen 195 EA--SG---------------------TSSL----------------------------------EA--------ALTAL 209 (1610)
T ss_pred cc--CC---------------------ccch----------------------------------hh--------ccccc
Confidence 00 00 0000 00 00112
Q ss_pred hhhhhcHHHHHHHHHhccCCCCCCCCCCCchhhh-----hHHHHHHHHHHHHHhCCccccCChHHH--HHHHHHHHHHHH
Q 000254 335 NKLRRDAFLVFRALCKLSMKTPPKEALADPQLMR-----GKIVALELLKILLENAGAVFRTSDRFL--GAIKQYLCLSLL 407 (1779)
Q Consensus 335 ~~~~~Da~lvfr~LC~Ls~k~~~~~~~~d~~~~r-----sk~lsLeLl~~iL~~~~~~f~~~~~f~--~~ik~~Lc~~Ll 407 (1779)
+++++|++..|..+|.+..- .+++.++ .+-.+++++++++.+....+..+..|. +.++...||.+.
T Consensus 210 ~~l~~dI~~~~~~i~l~~~~-------~~~~~L~~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~ 282 (1610)
T KOG1848|consen 210 DPLQKDICVGFENIQLMYPA-------IFDQLLAFIEESTKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAE 282 (1610)
T ss_pred chHHHhHhcchHHHHHhccc-------ccHhHHhcchhccccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHH
Confidence 67899999999999998732 2333333 477899999999999989999999998 899999998887
Q ss_pred HhhccCh-----------hHHHHHHHHHHHHHHHHH-----HHHHH-----------------------HHHHHHHHHHH
Q 000254 408 KNSASTL-----------MIVFQLSCSIFMSLVSRF-----RAGLK-----------------------AEIGVFFPMIV 448 (1779)
Q Consensus 408 ~n~~s~~-----------~~vf~lsl~If~~L~~~~-----r~~LK-----------------------~Eievf~~~i~ 448 (1779)
|...-.+ ...-++.+.++..++.++ ...++ .+.++|+...+
T Consensus 283 Rl~~~sv~~i~~l~~~ea~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~l 362 (1610)
T KOG1848|consen 283 RLLLRSVDLIQKLACHEAVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLL 362 (1610)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHh
Confidence 7654111 111122222222222211 00111 12234433322
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHHHhhChhHHHHHHHhcCCCCChhhHHHHHHHHHHhhccCCCCCCCCCCCCchhhhhh
Q 000254 449 LRVLENVAQPNFQQKMIVLRFLEKLCIDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPSTATSLLPPQESTMK 528 (1779)
Q Consensus 449 l~ile~~~~~~~~qk~~vLe~l~~l~~~p~~lvely~NYDCd~~~~nife~lv~~L~k~a~~~~~~~~~~~~~~q~~~l~ 528 (1779)
+.-.+ .++-||+..++++++++|.++..+..++.|+||++.+.++++..+-.++.+++
T Consensus 363 -k~~s~--~~~~~p~~l~~~~~~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy------------------- 420 (1610)
T KOG1848|consen 363 -KFDSM--DLELWPRFLDFLFLKSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVY------------------- 420 (1610)
T ss_pred -hhhhc--CcccCccHhHHHhhccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHH-------------------
Confidence 11111 24458889999999999999999999999999999999999988877766653
Q ss_pred hhhHHHHHH-HHHHHHHHhhhccCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCChhHHH
Q 000254 529 LEAMKCLVA-ILRSMGDWMNKQLRIPDPQSTKKFEAVENISSGPEPGTVPMANGNGDELVEGSDSHSEASSEISDVSTIE 607 (1779)
Q Consensus 529 ~~~l~~lv~-il~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 607 (1779)
.||+. +-.++.+...+.. .. + .+ ..|.
T Consensus 421 ----~~lv~ti~nsi~e~l~k~s-----------~e-----------s------g~--------------------~eFt 448 (1610)
T KOG1848|consen 421 ----KELVGTISNSIQEMLNKSS-----------IE-----------S------GG--------------------SEFT 448 (1610)
T ss_pred ----HHHHHhhhHHHHHHHHHhH-----------Hh-----------h------cC--------------------ccch
Confidence 22332 4444444322210 00 0 00 0000
Q ss_pred HHHHHHHHHHHHHHHhccCchhhHHHHHHcCCCCCCHHHHHHHHhccCCCChhHHHhhhccCCchhHHHHHHHHhcCCCC
Q 000254 608 QRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQ 687 (1779)
Q Consensus 608 ~~k~~K~~l~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~~~~~~~f~ 687 (1779)
. |. +||++- .+.|+.. -+++..
T Consensus 449 ~----k~--------------k~Ie~~--------------------~dnds~s------------tavl~~-------- 470 (1610)
T KOG1848|consen 449 S----KE--------------KGIELR--------------------EDNDSMS------------TAVLLQ-------- 470 (1610)
T ss_pred h----hh--------------cCceee--------------------ccCchHH------------HHHHHH--------
Confidence 0 00 121110 0000000 011100
Q ss_pred CCChHHHHHHHhccCcCCCchHHHHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHHHHhcccCCCccccCCCCHHHHHHh
Q 000254 688 RMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRN 767 (1779)
Q Consensus 688 ~~~~~~aLR~fl~~f~lpgE~q~idri~e~Fa~~y~~~np~~f~~~d~~y~laysiimLntdlhn~~~k~kmt~~~Fi~n 767 (1779)
|...-+.-+|+. -....++||+...- -.+|-
T Consensus 471 ------------------------------l~~~~~~li~e~----~~ss~~avSt~~~~-------------a~~v~-- 501 (1610)
T KOG1848|consen 471 ------------------------------LSFSNKVLIPEG----LYSSRMAVSTLLKR-------------AQDVL-- 501 (1610)
T ss_pred ------------------------------HHhhhhhhcccc----chhhhHHHHHHHHH-------------HHHHH--
Confidence 000000011110 01123344433220 01110
Q ss_pred hcCCCCCCCCcHHHHHHHHHHHHhCcccccCcchHHHhhhhcccccccccchhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 000254 768 NRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIRHMQEQ 847 (1779)
Q Consensus 768 ~~gi~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (1779)
.+|..- +
T Consensus 502 ----------------~l~~~~---------~------------------------------------------------ 508 (1610)
T KOG1848|consen 502 ----------------HLYIED---------E------------------------------------------------ 508 (1610)
T ss_pred ----------------HHhhhh---------h------------------------------------------------
Confidence 000000 0
Q ss_pred HHHhhcccCCceeeccchHHHHHHHHHhHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 000254 848 FKEKARKSESVYHAATDVVILRFMIEACWAPMLAAFSVPLDQSDDEVIIALCLQGFRYAIRVTAVMSMKTHRDAFVTSLA 927 (1779)
Q Consensus 848 ~~~~~~~~~~~f~~~~~~e~vr~Mfe~~W~piLaaLS~~l~~s~D~~~i~~~L~G~~~~i~Ia~~~~l~~~RDafl~sL~ 927 (1779)
.-.....+......+..+.|....|..++.+++..+.++.|+.+....+.|+...+..||+.+-+++..+++..||
T Consensus 509 ----~~s~k~~l~~~~kLe~i~~a~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~ 584 (1610)
T KOG1848|consen 509 ----VLSNKCPLPRQTKLEIIFDAVLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALV 584 (1610)
T ss_pred ----hhccCCccccceeehhHHHHHhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhC
Confidence 0000111112233466777888999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCC-----------------------------------------------------CCccccchHHHHHHHHHHHH
Q 000254 928 KFTSLHS-----------------------------------------------------PADIKQKNIDAIKAIVTIAD 954 (1779)
Q Consensus 928 kfT~L~~-----------------------------------------------------~~~l~~Kni~alr~Ll~iA~ 954 (1779)
+|+.... +..++.||++++|++++++.
T Consensus 585 ~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~ 664 (1610)
T KOG1848|consen 585 PFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMD 664 (1610)
T ss_pred CcccCCccHHHHHhhccccCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHH
Confidence 9975421 11256799999999999999
Q ss_pred hcCCchhhhHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCcchhhhhccccccccccccCCCCchhhhHhhhccCCccC
Q 000254 955 EDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQSESEKSKQAKSTILPVLKKKGPGRIQYAAATVMRGAYDS 1034 (1779)
Q Consensus 955 ~~G~~L~~sW~~IL~~isqle~Lqli~~g~~~d~~~~~~p~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~~~~~s~~s 1034 (1779)
.+-+.++.+|.+++.+.+.|.+.-- .. |.. + + +....
T Consensus 665 ~~~~sy~~sw~llm~t~~~ls~~~~-----------m~-p~q-t-------------------~--l~v~t--------- 701 (1610)
T KOG1848|consen 665 YELVSYKNSWSLLMYTTSSLSQPAY-----------ME-PLQ-T-------------------L--LAVIT--------- 701 (1610)
T ss_pred HHHHhhcchHHHHHHHHHHhcchhh-----------cC-HHH-h-------------------h--HHHHh---------
Confidence 9999999999999987654432110 00 000 0 0 00000
Q ss_pred CCCCCCCCCCCCHHHHhhhhhhhhHHHhhhcchhhHHHHhcccCChHHHHHHHHHHHHhhHHhhhcCC-----CCce--e
Q 000254 1035 AGIGGSASGVVTSEQMNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSAS-----DPRV--F 1107 (1779)
Q Consensus 1035 ~~~~~~~~~~~t~~~i~~~~~~~~vl~~i~s~~id~lF~~S~~L~~eai~~fv~ALc~vS~eel~~~~-----~pr~--F 1107 (1779)
..+.++..++.+-... .+...++. .-.+.+|.+++.++..+....++||.+++.+-+...+ .-|. |
T Consensus 702 --~~~~hp~~p~~~~~~~-ynd~~~ls----sl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~sslr~~~~ 774 (1610)
T KOG1848|consen 702 --SSSVHPIQPLTAPRQS-YNDDLLLS----SLKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSCSSLRFLDS 774 (1610)
T ss_pred --cCCCCCCCcchhhHHH-HHHHHHHH----HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 0011111221111111 12222232 2358999999999999999999999999987553211 1121 2
Q ss_pred hHHHHHHHHhhcccccccchhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhh-------hhhhh
Q 000254 1108 SLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNF-------QNEFM 1180 (1779)
Q Consensus 1108 sLqKLveV~~~Nm~Ri~l~W~~iW~~l~~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~F-------Q~~fL 1180 (1779)
.++-.+-.+..|--|-.. -|....+||.+.+||--.++...+ ++.++.- .-...+.+ |-.++
T Consensus 775 ~l~v~~~~~~l~e~snq~----~~~naa~~l~t~~n~vl~s~~~~~-asals~d------a~~dv~sk~ti~~es~~~~l 843 (1610)
T KOG1848|consen 775 KLDVSGWSLILKELSNQF----KIINAAPELRTRANNVLASILVDV-ASALSND------ASPDVYSKQTIFFESLGMLL 843 (1610)
T ss_pred hhhhhHHHHHHHHhhhHH----HHHHhHHHHHHHHHHHHHHHHhhh-hhhhhcc------cccchhccceeeHhhhHHHH
Confidence 333333333333222222 234455666665554322222211 1111110 00111223 33454
Q ss_pred hhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcc---cchhHHHHHHHHHHHHHhhccCcccc
Q 000254 1181 KPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYD---DHKNIVLLAFEIIEKIIRDYFPYITE 1257 (1779)
Q Consensus 1181 ~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~IkSGW~~IF~iL~~aa~~---~~~~lV~~aF~~l~~I~~d~l~~l~~ 1257 (1779)
-..+.....++..|+|-.-++|+.+++++.|+.+-+||..||++|+.++.. .+.++|++||+++++|++||++.+|
T Consensus 844 ~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp- 922 (1610)
T KOG1848|consen 844 PSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLP- 922 (1610)
T ss_pred HHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCC-
Confidence 445555556778899999999999999999999999999999999977643 3778999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhccccccCC
Q 000254 1258 TETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMID 1337 (1779)
Q Consensus 1258 ~~~~~f~d~I~cL~~F~~q~~~~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d 1337 (1779)
.+|+.+||+++..|++|+.|+||||+||++||.++|.++.......+. ......+ +.+.+ ....+
T Consensus 923 --~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed---~~~~~~~--------e~~~s--s~~~~ 987 (1610)
T KOG1848|consen 923 --TSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSED---SCAYNSV--------EDLYS--SMKSK 987 (1610)
T ss_pred --hHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchh---hhhhcch--------hhhcc--cccch
Confidence 799999999999999999999999999999999999987522211110 0000000 00000 01111
Q ss_pred cchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCC
Q 000254 1338 KDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQG 1417 (1779)
Q Consensus 1338 ~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~ 1417 (1779)
..-++.+||.||..|+++|.|+|+||||+|.||||+|+.+||+.|++..|+.|||.|++|+++..+.... +.
T Consensus 988 ~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~----~e---- 1059 (1610)
T KOG1848|consen 988 EILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNV----SE---- 1059 (1610)
T ss_pred hhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccch----hh----
Confidence 2236899999999999999999999999999999999999999999999999999999999998765321 11
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh
Q 000254 1418 VDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNP------LLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1489 (1779)
Q Consensus 1418 ~~~~s~~~~~~~Wl~eT~~laL~~lv~lf~~yf~~l~~------~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~~ 1489 (1779)
-++.+.+++|. ||++++++|++++|..||..+.. -|..++.+|-+.++..+..+.-.++.|+|.++.+
T Consensus 1060 ---wngkeiqkqwt-et~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1060 ---WNGKEIQKQWT-ETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred ---hcchhHhhhhh-hhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 11245569997 99999999999999999987763 4666677777777778888899999999998874
No 6
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-50 Score=437.50 Aligned_cols=192 Identities=53% Similarity=0.904 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHcCCCCCCHHHHHHHHhccCCCChhHHHhhhccCCchhHHHHHHHHhcCCCCCC
Q 000254 610 RAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRM 689 (1779)
Q Consensus 610 k~~K~~l~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~~~~~~~f~~~ 689 (1779)
+++.+.+--|-.+||.+|+|||+||+++.++..+|++||+||+.-+||+|++||+|||++++||.+||++|++.+.|.++
T Consensus 59 ~q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef~dl 138 (395)
T KOG0930|consen 59 KQRNKQVAMGRKKFNMDPKKGIQFLIENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEFTDL 138 (395)
T ss_pred HHHhHHHhhchhhcCCChHHHhHHHHHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHhccc
Confidence 45556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccCcCCCchHHHHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHHHHhcccCCCccccCCCCHHHHHHhhc
Q 000254 690 EFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNR 769 (1779)
Q Consensus 690 ~~~~aLR~fl~~f~lpgE~q~idri~e~Fa~~y~~~np~~f~~~d~~y~laysiimLntdlhn~~~k~kmt~~~Fi~n~~ 769 (1779)
+++.|||+||=+||||||+|+|||+||+||+|||.|||++|.|+|++|+|+||+|||||.+|||+||+|-+++.||.|||
T Consensus 139 nlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~MNr 218 (395)
T KOG0930|consen 139 NLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFIAMNR 218 (395)
T ss_pred hHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhCcccccCcch
Q 000254 770 GIDDGKDLPEEYLRSLFERISRNEIKMKGDDL 801 (1779)
Q Consensus 770 gi~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~ 801 (1779)
|||+|.|+|+|.|..+|++|+.+++++++|..
T Consensus 219 gineggdlpee~LrnlyeSi~~epFkIPeddg 250 (395)
T KOG0930|consen 219 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 250 (395)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCCCCCcccC
Confidence 99999999999999999999999999998863
No 7
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=3.2e-49 Score=434.67 Aligned_cols=183 Identities=59% Similarity=1.018 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHcCCC-CCCHHHHHHHHhccCCCChhHHHhhhccCCchhHHHHHHHHhcCCCCCCC
Q 000254 612 YKLELQEGISLFNRKPKKGIEFLINAKKV-GNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRME 690 (1779)
Q Consensus 612 ~K~~l~~~~~~Fn~~p~~gi~~l~~~~~~-~~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~~~~~~~f~~~~ 690 (1779)
+|..+++|+.+||++|++||+||++.|++ +++|++||+||+.+++|||.+||+|||+++++|.+||++|++.|||+|++
T Consensus 1 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~ 80 (185)
T cd00171 1 RKTLLSEGRQLFNRKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLR 80 (185)
T ss_pred CcHHHHHHHHHHccCHHHHHHHHHHCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCC
Confidence 37789999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCcCCCchHHHHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHHHHhcccCCCccccCCCCHHHHHHhhc
Q 000254 691 FDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFT-SADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNR 769 (1779)
Q Consensus 691 ~~~aLR~fl~~f~lpgE~q~idri~e~Fa~~y~~~np~~f~-~~d~~y~laysiimLntdlhn~~~k~kmt~~~Fi~n~~ 769 (1779)
|++|||.||.+|+||||+|+|||||+.||++||+|||+.+. ++|++|+|+||+||||||+|||++++|||+++|++|++
T Consensus 81 i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 81 LDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhCcc
Q 000254 770 GIDDGKDLPEEYLRSLFERISRNEI 794 (1779)
Q Consensus 770 gi~~~~~~~~~~L~~iY~~I~~~~i 794 (1779)
|+++|+++|+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986
No 8
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=7.6e-49 Score=435.16 Aligned_cols=185 Identities=52% Similarity=0.951 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHcCCC--CCCHHHHHHHHhccCCCChhHHHhhhccCCchhHHHHHHHHhcCCCC
Q 000254 610 RAYKLELQEGISLFNRKPKKGIEFLINAKKV--GNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQ 687 (1779)
Q Consensus 610 k~~K~~l~~~~~~Fn~~p~~gi~~l~~~~~~--~~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~~~~~~~f~ 687 (1779)
|++|..+++|+.+||++|++||+||++.|++ +++|++||+||+.+++|||.+||+|||+++++|.+||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 6789999999999999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccCcCCCchHHHHHHHHHHHHHHhhhCCC--CCCChhHHHHHHHHHHHhcccCCCccccCCCCHHHHH
Q 000254 688 RMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPK--VFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFI 765 (1779)
Q Consensus 688 ~~~~~~aLR~fl~~f~lpgE~q~idri~e~Fa~~y~~~np~--~f~~~d~~y~laysiimLntdlhn~~~k~kmt~~~Fi 765 (1779)
|++|++|||.||.+|+||||+|+|||||+.||++||+|||+ .|.++|++|+|+||+||||||+|||++++|||+++|+
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 99999999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHHHHhCcc
Q 000254 766 RNNRGIDDGKDLPEEYLRSLFERISRNEI 794 (1779)
Q Consensus 766 ~n~~gi~~~~~~~~~~L~~iY~~I~~~~i 794 (1779)
+|++|+++|+++|+++|++||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 9
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=1.9e-48 Score=430.13 Aligned_cols=183 Identities=55% Similarity=0.947 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHcCCCC-CCHHHHHHHHhccCCCChhHHHhhhccCCchhHHHHHHHHhcCCCCCCC
Q 000254 612 YKLELQEGISLFNRKPKKGIEFLINAKKVG-NTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRME 690 (1779)
Q Consensus 612 ~K~~l~~~~~~Fn~~p~~gi~~l~~~~~~~-~~p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~~~~~~~f~~~~ 690 (1779)
+|..+.+|+.+||++|++||+||++.|++. ++|++||+||+++++|||++||+|||+++++|.+||++|++.|||+|++
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~~ 81 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAKDDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAKD 81 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCCc
Confidence 477899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCcCCCchHHHHHHHHHHHHHHhhhCCCCCC--ChhHHHHHHHHHHHhcccCCCccccCCCCHHHHHHhh
Q 000254 691 FDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFT--SADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNN 768 (1779)
Q Consensus 691 ~~~aLR~fl~~f~lpgE~q~idri~e~Fa~~y~~~np~~f~--~~d~~y~laysiimLntdlhn~~~k~kmt~~~Fi~n~ 768 (1779)
|++|||.||..|+||||+|+|||||+.||++||+|||+.+. |+|++|+|+||+||||||+|||++++|||+++|++|+
T Consensus 82 i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~~~ 161 (187)
T smart00222 82 LDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKNV 161 (187)
T ss_pred HHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999887 9999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhCcc
Q 000254 769 RGIDDGKDLPEEYLRSLFERISRNEI 794 (1779)
Q Consensus 769 ~gi~~~~~~~~~~L~~iY~~I~~~~i 794 (1779)
+|+++|.++|++||++||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 162 RGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred hccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986
No 10
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-48 Score=446.19 Aligned_cols=193 Identities=44% Similarity=0.832 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHcCCCCCCHHHHHHHHhccCCCChhHHHhhhcc-CCchhHHHHHHHHhcCCCCCCC
Q 000254 612 YKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGE-REELPLKVMHAYVDSFDFQRME 690 (1779)
Q Consensus 612 ~K~~l~~~~~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fL~~~~~l~k~~igeylg~-~~~~~~~vl~~~~~~~~f~~~~ 690 (1779)
+|+...-|..+||+||.|||+||++.||++++|..+|+||++..||+|+|||||||. .++||..||+++|+.|||++|.
T Consensus 197 ~kr~YriGlnlfn~kPekGvQ~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfssme 276 (627)
T KOG0931|consen 197 RKRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSME 276 (627)
T ss_pred HHHHhhhccchhcCCcchhhhhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhccccch
Confidence 466677799999999999999999999999999999999999999999999999998 4689999999999999999999
Q ss_pred hHHHHHHHhccCcCCCchHHHHHHHHHHHHHHhhhCCC---CCCChhHHHHHHHHHHHhcccCCCcccc--CCCCHHHHH
Q 000254 691 FDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPK---VFTSADTAYVLAYSVILLNTDSHNPMVK--NKMSADDFI 765 (1779)
Q Consensus 691 ~~~aLR~fl~~f~lpgE~q~idri~e~Fa~~y~~~np~---~f~~~d~~y~laysiimLntdlhn~~~k--~kmt~~~Fi 765 (1779)
+|+|||+|...||+|||||||||++|+||.|||.|||. -|.|.|++|+|||+|||||||+|+|+|| +||+++|||
T Consensus 277 lDeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~leDFi 356 (627)
T KOG0931|consen 277 LDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLEDFI 356 (627)
T ss_pred HHHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHHHHH
Confidence 99999999999999999999999999999999999998 5999999999999999999999999999 899999999
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHHHHhCcccccCcchHHH
Q 000254 766 RNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQ 804 (1779)
Q Consensus 766 ~n~~gi~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~~~ 804 (1779)
||.||.|+|.|+|++.|.+||++|+++|++..+||.+..
T Consensus 357 kNLRGvDnGeDIpRell~GIYeRIqk~ELktndDHVsqV 395 (627)
T KOG0931|consen 357 KNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHVSQV 395 (627)
T ss_pred HhccCCCCcccCcHHHHHHHHHHHHHhhcccCcchHHHH
Confidence 999999999999999999999999999999999997643
No 11
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-41 Score=400.89 Aligned_cols=922 Identities=17% Similarity=0.214 Sum_probs=594.5
Q ss_pred HHHHHHHHHHHHHHhhh-----CCC----------CCCChhHHHHHHHHHHHhc-c-cCCCcc---c-c----CCCCHHH
Q 000254 709 QKIDRIMEKFAERYCKC-----NPK----------VFTSADTAYVLAYSVILLN-T-DSHNPM---V-K----NKMSADD 763 (1779)
Q Consensus 709 q~idri~e~Fa~~y~~~-----np~----------~f~~~d~~y~laysiimLn-t-dlhn~~---~-k----~kmt~~~ 763 (1779)
-..|.++..||-++|+. .|+ ...|||.-|..|-.-.++| - -.|... . | .+=|..+
T Consensus 404 cedDTalnnFalkccegvsdicspdeDgensfdfqmlmnAdedpmAAhcakLenkfklahgatrrssekdeslapgtaKd 483 (1777)
T KOG1846|consen 404 CEDDTALNNFALKCCEGVSDICSPDEDGENSFDFQMLMNADEDPMAAHCAKLENKFKLAHGATRRSSEKDESLAPGTAKD 483 (1777)
T ss_pred hhhHHHHHHHHHHHhcCcccccCCCCCccchhhHHHhcCCCcchHHHHHHHHHHHhccCcccccchhccCcccCcchHHH
Confidence 35788999999999975 343 2458888898888888887 2 223222 1 1 2457899
Q ss_pred HHHhhcCCCCCCCCcHHHHHHHHHHHHhCcccccCcchHHHhhhhcccccccccchhhHHHHhhhhhhhhhhhhHHHHH-
Q 000254 764 FIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLAVQQMQSMNSNRILGLDSILNIVIRKRGEEKYMETSDDLIR- 842 (1779)
Q Consensus 764 Fi~n~~gi~~~~~~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~- 842 (1779)
|++....-.-.--+.+.+.++||+.|........+..-+.......+..+. +...+|....- +..+ ++..+|.
T Consensus 484 FmkalqeSgldiiaapanieeideaiLdfnmlfeagfcgshaDaskpliki--lqdflntdagl--esaa--aggcliah 557 (1777)
T KOG1846|consen 484 FMKALQESGLDIIAAPANIEEIDEAILDFNMLFEAGFCGSHADASKPLIKI--LQDFLNTDAGL--ESAA--AGGCLIAH 557 (1777)
T ss_pred HHHHHHhcCceeeeccccHHHHHHHHHhhhhccccccccCchhccccHHHH--HHHhhhhhHHH--HHHh--hcceeecc
Confidence 999876432223467889999999998765443222111000000000000 00001100000 0000 0001110
Q ss_pred ---HHHHHHHHhhcccCCceeeccchHHHHHHHHHhHHHHHHHHhccccc---------------------------CCh
Q 000254 843 ---HMQEQFKEKARKSESVYHAATDVVILRFMIEACWAPMLAAFSVPLDQ---------------------------SDD 892 (1779)
Q Consensus 843 ---~~~~~~~~~~~~~~~~f~~~~~~e~vr~Mfe~~W~piLaaLS~~l~~---------------------------s~D 892 (1779)
..-+.++++...+. -+.++.+.+-..--+|..+..+++.++-. ...
T Consensus 558 aaTeslealkkriddSg----cVagVAfarldkVfcnkkliDalsspilpglmagindfdafakGlladgeKekniKeRq 633 (1777)
T KOG1846|consen 558 AATESLEALKKRIDDSG----CVAGVAFARLDKVFCNKKLIDALSSPILPGLMAGINDFDAFAKGLLADGEKEKNIKERQ 633 (1777)
T ss_pred ccccCHHHHhhhccccc----ceeehhhhHHHHhhhhhhhhhhhccccchhhhhcccchHHHHhhhhhhhHHHhhhhhhh
Confidence 00111122211111 13345555666666888888888877321 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCC---------CCc-----------------------ccc
Q 000254 893 EVIIALCLQGFRYAIRVTAVMSMKTHRDAFVTSLAKFTSLHS---------PAD-----------------------IKQ 940 (1779)
Q Consensus 893 ~~~i~~~L~G~~~~i~Ia~~~~l~~~RDafl~sL~kfT~L~~---------~~~-----------------------l~~ 940 (1779)
++....-++|++++++++|..|....++..++-|+-...-.. |.. ...
T Consensus 634 ddaeCmeedglakaarlscaagvaaicasalaflAaaecrkeeeeeREAiepSdagmqnkcaVaQkLelegkcggifehl 713 (1777)
T KOG1846|consen 634 DDAECMEEDGLAKAARLSCAAGVAAICASALAFLAAAECRKEEEEEREAIEPSDAGMQNKCAVAQKLELEGKCGGIFEHL 713 (1777)
T ss_pred cchhhhchhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcChHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 355667789999999999999999999988888876543211 100 123
Q ss_pred chHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHhhc--CCCCCCCccccC--CCc-chhhhh-----c-cccccc
Q 000254 941 KNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLG--EGAPPDATFFAF--PQS-ESEKSK-----Q-AKSTIL 1009 (1779)
Q Consensus 941 Kni~alr~Ll~iA~~~G~~L~~sW~~IL~~isqle~Lqli~--~g~~~d~~~~~~--p~~-~~~~~~-----~-~~s~~~ 1009 (1779)
-++.|..+.|......|.+-.++|+++.+....+-.|+..- .|....+..... |.. +.+... . .+++..
T Consensus 714 aetlCceadLrddaeaGshnddcqkhtcrscEhlgalehnhdeagaaihalscskcseqkaegeagilGdaeCeekPpeh 793 (1777)
T KOG1846|consen 714 AETLCCEADLRDDAEAGSHNDDCQKHTCRSCEHLGALEHNHDEAGAAIHALSCSKCSEQKAEGEAGILGDAECEEKPPEH 793 (1777)
T ss_pred HHHHHHHHHhhchhhhcCCCCccccccchHHHHHHHHHhhcccccccCCccchhccchhhhhccccccCChhhcCCCccc
Confidence 45678889999999999999999999998765554454421 121000000000 000 000000 0 000000
Q ss_pred cccccCCC-------CchhhhHhhhccCCc--cCCCCCCCCCCCCCHHHHhhhhhhhhHHHhhhcchhhHHHHh-cccCC
Q 000254 1010 PVLKKKGP-------GRIQYAAATVMRGAY--DSAGIGGSASGVVTSEQMNNLVSNLNMLEQVGSSEMNRIFTR-SQKLN 1079 (1779)
Q Consensus 1010 p~~~~~~~-------~~~~~~~~~~~~~s~--~s~~~~~~~~~~~t~~~i~~~~~~~~vl~~i~s~~id~lF~~-S~~L~ 1079 (1779)
..-|++. .+..+..-...-|+. .+.-.|++- ++-... ..++ +..+..+||+|+. ...|.
T Consensus 794 -kferqgredkeadkeeklsaaDlsiEgalGdapdfrggsl---mSghSa------akai-ctLiakaDRffedacdeLc 862 (1777)
T KOG1846|consen 794 -KFERQGREDKEADKEEKLSAADLSIEGALGDAPDFRGGSL---MSGHSA------AKAI-CTLIAKADRFFEDACDELC 862 (1777)
T ss_pred -ChhhcCcccccccccccccHHhhhhccccCCCcccccccc---cccchH------HHHH-HHHHHHHHHHHHHHHHHHh
Confidence 0000000 000000000000000 011111111 111111 1112 2224578999999 68899
Q ss_pred hHHHHHHHHHHHHhhHHhhhcCC---------CC--------c--eehHHHHHHHH---hhcccccccchhhhHHHHHHH
Q 000254 1080 SEAIIDFVKALCKVSMEELRSAS---------DP--------R--VFSLTKIVEIA---HYNMNRIRLVWSSIWHVLSDF 1137 (1779)
Q Consensus 1080 ~eai~~fv~ALc~vS~eel~~~~---------~p--------r--~FsLqKLveV~---~~Nm~Ri~l~W~~iW~~l~~h 1137 (1779)
.-|+.+|.-++.+.|...+..+. -| | ...|.||.+.. ....-|+.++-+.+|..++.|
T Consensus 863 LmALgdfcvaiikaSenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiirilrhkaRPLlHqMfcwpLVaaH 942 (1777)
T KOG1846|consen 863 LMALGDFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILRHKARPLLHQMFCWPLVAAH 942 (1777)
T ss_pred HHHHhHHHHHHHHhhhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhHH
Confidence 99999999999999988775420 12 2 46678888732 223349999999999999999
Q ss_pred HHHh-ccCCCHHHHHHHHHHHHHHHHHhhc-hhhhhhhhhhhhhhhhHHHHHhh-cChHHHHHHHHHHHHHHHHhccccc
Q 000254 1138 FVNI-GCSENLSIAIFAMDSLRQLSMKFLE-REELANYNFQNEFMKPFVIVMRK-SNAVEIRELIIRCVSQMVLSRVNNV 1214 (1779)
Q Consensus 1138 f~~v-~~~~n~~va~~AvdsLrqL~~kfLe-~eEL~~~~FQ~~fL~Pfe~im~~-~~~~eVre~vL~cl~qmi~~~~~~I 1214 (1779)
|+++ +||....|+..|+..+..+.++.|. +.|-++|+|.+.++.||+.+|+. +|+.|++++++..|.++|+.++..|
T Consensus 943 fVeasaCdkErhvSqiAaSaiadilTelLtdwnEpPgfhFNeaLfgPFeramclElCdEdtkdQflsSigeLVescadkI 1022 (1777)
T KOG1846|consen 943 FVEASACDKERHVSQIAASAIADILTELLTDWNEPPGFHFNEALFGPFERAMCLELCDEDTKDQFLSSIGELVESCADKI 1022 (1777)
T ss_pred HHhHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhHhhhchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 8999999999999999999998875 68999999999999999999986 5899999999999999999999999
Q ss_pred ccCcHHHHHHHHHhhcccch----hHH---------HHHHHHHHH-HHhhccCcccccccccHHHHHHHHHHHHhCCC--
Q 000254 1215 KSGWKSMFMVFTTAAYDDHK----NIV---------LLAFEIIEK-IIRDYFPYITETETTTFTDCVNCLIAFTNSRF-- 1278 (1779)
Q Consensus 1215 kSGW~~IF~iL~~aa~~~~~----~lV---------~~aF~~l~~-I~~d~l~~l~~~~~~~f~d~I~cL~~F~~q~~-- 1278 (1779)
.||||++|+.|.++...+.. .++ ..+|++++- +..|..+.+ .++...||.|+.+|.++-.
T Consensus 1023 gSGWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfeafLniDnipVf----anaalecimClmkflkgleev 1098 (1777)
T KOG1846|consen 1023 GSGWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLNIDNIPVF----ANAALECIMCLMKFLKGLEEV 1098 (1777)
T ss_pred cccchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHHHhccCchHhH----HHHHHHHHHHHHHHHhccccc
Confidence 99999999999998754322 222 358888874 444665544 5789999999999987654
Q ss_pred ---------------CccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCC------CCchhhhhcc------
Q 000254 1279 ---------------NKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPAS------PRPVKELKLE------ 1331 (1779)
Q Consensus 1279 ---------------~~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~~------ 1331 (1779)
..+++|.|++||++|..-++.-+-.... +....|+..+.. .....++.+.
T Consensus 1099 DckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhk---PifhlghladLprkcldqsamdeDgIEsphgpfp 1175 (1777)
T KOG1846|consen 1099 DCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHK---PIFHLGHLADLPRKCLDQSAMDEDGIESPHGPFP 1175 (1777)
T ss_pred ccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCc---hhhhhhhhhcchHHHHhhhhcccCCccCCCCCcc
Confidence 2468899999999998876653322111 101111110000 0000011110
Q ss_pred -ccccCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCC-ChhhHHHHHHHhhhhhHHhhhhccCCC
Q 000254 1332 -NGEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLF-SLPLWERVFDSVLFPIFDYVRHTIDPS 1409 (1779)
Q Consensus 1332 -~~~~~d~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f-~~~~W~~i~~~VLfPifd~l~~~~~~~ 1409 (1779)
...+.+...-+++|+.+|..+.....++.|.-++.-+..+|++|....... ++.|--.+...+|+|.+..|..+.
T Consensus 1176 vledfdddiagiElfiiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsaliLPvmqkWiRRl--- 1252 (1777)
T KOG1846|consen 1176 VLEDFDDDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALILPVMQKWIRRL--- 1252 (1777)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHHHHHHHHHHHHh---
Confidence 012233344688999999999998888888999999999999999876544 777777888999999999986643
Q ss_pred CCCCCCCCCCCCCCcchhhhHHHHH--HHHHHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHhccchh
Q 000254 1410 GENSPGQGVDGDTGELDQDAWLYET--CTLALQLVVDLFVKFY-------------NTVNPLLRKVLMLLVSFIKRPHQS 1474 (1779)
Q Consensus 1410 ~~~~~~~~~~~~s~~~~~~~Wl~eT--~~laL~~lv~lf~~yf-------------~~l~~~l~~~l~lL~~~i~q~~e~ 1474 (1779)
+-+...|+... ..+|++.-+.+...+. ..++.++.+.+.++..|...+.+.
T Consensus 1253 --------------dkdesywdmakaifKhaIGaccelVidhielekhSswddRlerdIcalikdcfefdkaCaaaPaef 1318 (1777)
T KOG1846|consen 1253 --------------DKDESYWDMAKAIFKHAIGACCELVIDHIELEKHSSWDDRLERDICALIKDCFEFDKACAAAPAEF 1318 (1777)
T ss_pred --------------chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhCcHHH
Confidence 33567887544 5677777777665544 334567888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhcchhhhccCCcc---------hhhhh----hhcc-cc--cc-
Q 000254 1475 LAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAKATLPDFSYLGSED---------CMAEI----AAKG-QI--NV- 1537 (1779)
Q Consensus 1475 lArig~s~l~~ll~~~g~~f~~~~W~~i~~~l~~l~~~t~~~~~~~~~~~---------~~~~~----~~~~-~~--~~- 1537 (1779)
+.+.|++|++.++...|++|++++|+..|.++.++|.+|+.+..+++.+. +++++ |... .+ ..
T Consensus 1319 iliagcsciryvlvtagpkFseemWniaccaLadAfsasLkhVkdLlgcFhrgsedenGdgcqigdaapSsnPgaeaerq 1398 (1777)
T KOG1846|consen 1319 ILIAGCSCIRYVLVTAGPKFSEEMWNIACCALADAFSASLKHVKDLLGCFHRGSEDENGDGCQIGDAAPSSNPGAEAERQ 1398 (1777)
T ss_pred HHHhhcchheeeeeccCccccHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhcCCcccCCCcceeccccCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999887776542 11111 1100 00 00
Q ss_pred ------------cCCCCCCCCC---------------Chhhhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000254 1538 ------------ESSGSGLPDD---------------DSENLRTQ-----HLFACIADAKCRAAVQLLLIQAVMEIYN-- 1583 (1779)
Q Consensus 1538 ------------~~~~~~~~~~---------------~~~~~~~~-----~~~~~~~~~~~kcv~QLlliq~~~el~~-- 1583 (1779)
..+..+..|. ..+++|.. .++.+++..++||++ +|.+.+|+-
T Consensus 1399 lIaAmaqlsfmkdkqcgpkkpeeeDhaqgcaLIielhgadkpnghtkhrlefheIisSLfsHclL----LQliadiLLeE 1474 (1777)
T KOG1846|consen 1399 LIAAMAQLSFMKDKQCGPKKPEEEDHAQGCALIIELHGADKPNGHTKHRLEFHEIISSLFSHCLL----LQLIADILLEE 1474 (1777)
T ss_pred HHHHHHHHHHHHhhccCCCCCcchhhhhcceeeEecCCccCCCCcccceeeHHHHHHHHHHHHHH----HHHHHHHHHHh
Confidence 1122221111 11222322 234456788888865 455556552
Q ss_pred ---------------------hhhcCCCHHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhccCCCCCCCCchhhHHHh
Q 000254 1584 ---------------------MYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENES 1642 (1779)
Q Consensus 1584 ---------------------~~~~~L~~~~l~~Ll~~L~~s~~fA~~fN~d~~LR~~L~k~g~~~~~~~PnLLkQE~~s 1642 (1779)
.|.++|+.+.+..|.++|.+||+.|++|++.+.|...|.|+-.+.+. .|||||...+
T Consensus 1475 dskgPklgaekigqtpeadlagflryiddqilaiifdiLldSseTaldFDsrPalgcLLkkmlGigga--ANLlkasals 1552 (1777)
T KOG1846|consen 1475 DSKGPKLGAEKIGQTPEADLAGFLRYIDDQILAIIFDILLDSSETALDFDSRPALGCLLKKMLGIGGA--ANLLKASALS 1552 (1777)
T ss_pred hccCCCCCccccccCCCcchhhHHHhcchhHHHHHHHHHhhhhhhhhccCCCccHHHHHHHHhccchH--HHHHHHHHHH
Confidence 26688999999999999999999999999999999999998877666 9999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHhHHHHHHHHHHHHHHHH
Q 000254 1643 FQICLTFLQNIILDRPPTYEEADVESHLVNLCQEVLQLY 1681 (1779)
Q Consensus 1643 ~~~yl~iL~~l~~d~~~~~~~~~i~~~L~~lc~~il~~y 1681 (1779)
+..|.+.|-+...-+...-..+++.+.|++=-....+.-
T Consensus 1553 fnilfhalscavLlnqeeiTaeqvkkeLfeddakatdSr 1591 (1777)
T KOG1846|consen 1553 FNILFHALSCAVLLNQEEITAEQVKKELFEDDAKATDSR 1591 (1777)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhchhhhhhhcch
Confidence 999999999887766554455666666666544444433
No 12
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=100.00 E-value=1.9e-33 Score=307.73 Aligned_cols=162 Identities=47% Similarity=0.756 Sum_probs=150.4
Q ss_pred hhhhhcHHHHHHHHHhccCCCCCCCCCCCc--hhhhhHHHHHHHHHHHHHhCCcccc---CChHHHHHHHHHHHHHHHHh
Q 000254 335 NKLRRDAFLVFRALCKLSMKTPPKEALADP--QLMRGKIVALELLKILLENAGAVFR---TSDRFLGAIKQYLCLSLLKN 409 (1779)
Q Consensus 335 ~~~~~Da~lvfr~LC~Ls~k~~~~~~~~d~--~~~rsk~lsLeLl~~iL~~~~~~f~---~~~~f~~~ik~~Lc~~Ll~n 409 (1779)
+.+++|||+|||+||+|++|+.+.++.++. +..++|++|||||+++|+++|+.|. .|+.|++++|++||++|++|
T Consensus 2 ~~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~ 81 (168)
T PF12783_consen 2 NYYVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKN 81 (168)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999998776543332 5788999999999999999999999 55599999999999999999
Q ss_pred hccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhhChhHHHHHHHhcCC
Q 000254 410 SASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLCIDSQILVDIFINYDC 489 (1779)
Q Consensus 410 ~~s~~~~vf~lsl~If~~L~~~~r~~LK~Eievf~~~i~l~ile~~~~~~~~qk~~vLe~l~~l~~~p~~lvely~NYDC 489 (1779)
+.++.+++|+.+++||++|+.+||.+||.|+|+||+.|++++++++ ++++|||+++||+++++|++|++++|+|+||||
T Consensus 82 ~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~-~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYDC 160 (168)
T PF12783_consen 82 LSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESD-NSSLWQKELALEILRELCKDPQFLVDLFVNYDC 160 (168)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHHHhChhHHHHHHHHcCC
Confidence 9998899999999999999999999999999999999999999998 457899999999999999999999999999999
Q ss_pred CCChhhHH
Q 000254 490 DVNSSNIF 497 (1779)
Q Consensus 490 d~~~~nif 497 (1779)
|.+++|||
T Consensus 161 d~~~~nif 168 (168)
T PF12783_consen 161 DLNSKNIF 168 (168)
T ss_pred CCCCCCCC
Confidence 99999986
No 13
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-27 Score=279.85 Aligned_cols=154 Identities=34% Similarity=0.631 Sum_probs=149.8
Q ss_pred HHHHHHHHhccCCCChhHHHhhhccCCchhHHHHHHHHhcCCCCCCChHHHHHHHhccCcCCCchHHHHHHHHHHHHHHh
Q 000254 644 PEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYC 723 (1779)
Q Consensus 644 p~~ia~fL~~~~~l~k~~igeylg~~~~~~~~vl~~~~~~~~f~~~~~~~aLR~fl~~f~lpgE~q~idri~e~Fa~~y~ 723 (1779)
...+|+-|+.-+|.-|..+..|||++++|..-|..+|+..|+|.|+++|.|||.||+.|-|-||.|.-+|++-.|+.|||
T Consensus 307 A~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~ 386 (774)
T KOG0932|consen 307 AARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYF 386 (774)
T ss_pred HHHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCChhHHHHHHHHHHHhcccCCCccccCCCCHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Q 000254 724 KCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMK 797 (1779)
Q Consensus 724 ~~np~~f~~~d~~y~laysiimLntdlhn~~~k~kmt~~~Fi~n~~gi~~~~~~~~~~L~~iY~~I~~~~i~~~ 797 (1779)
+|||++|.+.|.++.|.++||+||||||.++|-+|||.+|||-|..|+|+|.|||.|+|..+|++|+++.+...
T Consensus 387 ~CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKneklewA 460 (774)
T KOG0932|consen 387 QCNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLEWA 460 (774)
T ss_pred ccCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977654
No 14
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.84 E-value=9.8e-22 Score=189.37 Aligned_cols=86 Identities=48% Similarity=0.925 Sum_probs=84.0
Q ss_pred HHhhchhhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcccchhHHHHHH
Q 000254 1162 MKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAF 1241 (1779)
Q Consensus 1162 ~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF 1241 (1779)
||||+++||++|+||++||+||+.||.++++.+||++||+|+.+|+++++++|+|||++||++|+.++.+.++++|..||
T Consensus 1 ~kfl~~~El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af 80 (86)
T PF09324_consen 1 MKFLEKEELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAF 80 (86)
T ss_pred CCccccccccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000254 1242 EIIEKI 1247 (1779)
Q Consensus 1242 ~~l~~I 1247 (1779)
+++++|
T Consensus 81 ~~~~~I 86 (86)
T PF09324_consen 81 QIVQLI 86 (86)
T ss_pred HHHhhC
Confidence 999875
No 15
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.44 E-value=4.6 Score=59.10 Aligned_cols=145 Identities=12% Similarity=0.128 Sum_probs=96.7
Q ss_pred hhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHH-HhhhhhHHhhhhccCCCCCCCCCCCC
Q 000254 1340 DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFD-SVLFPIFDYVRHTIDPSGENSPGQGV 1418 (1779)
Q Consensus 1340 ~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~-~VLfPifd~l~~~~~~~~~~~~~~~~ 1418 (1779)
.|..+|-.+-.-|..+..++..+|+--|+..|=++-..+-.. .+.+..=|+ ..|-|+-..+....
T Consensus 1130 ~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~--eEL~~f~FQkefLkPfe~im~~s~------------ 1195 (1780)
T PLN03076 1130 VWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLER--EELANYNFQNEFMKPFVIVMRKSN------------ 1195 (1780)
T ss_pred ehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcch--hhhhchhHHHHHHHHHHHHHHhcC------------
Confidence 477889888888888866666889999999876654433221 122333333 45556555554311
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCCC---
Q 000254 1419 DGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFS--- 1495 (1779)
Q Consensus 1419 ~~~s~~~~~~~Wl~eT~~laL~~lv~lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~~~g~~f~--- 1495 (1779)
.. +-+-+.++.+..+...+.+.+..-|+-++.+|..-....++.+.+.|-..++.++...-+.+.
T Consensus 1196 -----~~-------eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~ 1263 (1780)
T PLN03076 1196 -----AV-------EIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETE 1263 (1780)
T ss_pred -----ch-------HHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 11 444567777777777888888888999999999888888899999998888877765444333
Q ss_pred HHHHHHHHHHHHHHH
Q 000254 1496 DEKWLEVAESLKEAA 1510 (1779)
Q Consensus 1496 ~~~W~~i~~~l~~l~ 1510 (1779)
.+.-...++++.+..
T Consensus 1264 ~~~F~DlV~cL~~Fa 1278 (1780)
T PLN03076 1264 TTTFTDCVNCLIAFT 1278 (1780)
T ss_pred hhHHHHHHHHHHHHH
Confidence 345555666655443
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=3.6 Score=52.86 Aligned_cols=320 Identities=18% Similarity=0.275 Sum_probs=168.4
Q ss_pred chhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhh-hhHHHH------HhhcChHHHHHH
Q 000254 1126 VWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFM-KPFVIV------MRKSNAVEIREL 1198 (1779)
Q Consensus 1126 ~W~~iW~~l~~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL-~Pfe~i------m~~~~~~eVre~ 1198 (1779)
.|..+-..| .++-.+++.....-|.+.|..++ |+-++ .|+.+++ +|+..+ +-+++++.||..
T Consensus 125 ~wpelLp~L----~~~L~s~d~n~~EgA~~AL~KIc------EDsa~-~lds~~~~rpl~~mipkfl~f~~h~spkiRs~ 193 (885)
T KOG2023|consen 125 HWPELLPQL----CELLDSPDYNTCEGAFGALQKIC------EDSAQ-FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSH 193 (885)
T ss_pred cchhHHHHH----HHHhcCCcccccchhHHHHHHHH------hhhHH-HHhhhcccCchHHhHHHHHHHHhCCChhHHHH
Confidence 455444444 44333444444445677777665 22111 1233222 222221 234568999999
Q ss_pred HHHHHHHHHHhcccccccCcHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCC
Q 000254 1199 IIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRF 1278 (1779)
Q Consensus 1199 vL~cl~qmi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~q~~ 1278 (1779)
.+.||.|+|-.+.+.+--.=..-++.+-+-+.|+++++=+.....+-.+..-..+.+. ......|.-.. ...|..
T Consensus 194 A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~----phl~~IveyML-~~tqd~ 268 (885)
T KOG2023|consen 194 AVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV----PHLDNIVEYML-QRTQDV 268 (885)
T ss_pred HHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc----cchHHHHHHHH-HHccCc
Confidence 9999999998777766544555556666666888887766666666555443333222 12222222222 246778
Q ss_pred CccccHHHHHHHHHHHH-----------------hhhcccccccCCCc----hhhhcccCCCC----CCCchhh---hhc
Q 000254 1279 NKDISLNAIAFLRFCAT-----------------KLAEGDLSASSSNK----DKEISAKIPPA----SPRPVKE---LKL 1330 (1779)
Q Consensus 1279 ~~niSL~AI~~L~~~~~-----------------~l~~~~~~~~~~~~----~~~~~~~i~~~----~~~~~~~---~~~ 1330 (1779)
|.+++|.|-++.-..+. -|..|. ...+... +.+-...+++. -|+-.+. +..
T Consensus 269 dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M-~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~ 347 (885)
T KOG2023|consen 269 DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGM-VYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNG 347 (885)
T ss_pred chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC-ccccccHHHhcCccccccCCchhhhccchhhhchhccCc
Confidence 88999999887543222 111110 0000000 00000000000 0000000 000
Q ss_pred c----ccccC---CcchhhhhHHHHHHHHhhhcCCCcHHHHH---HHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHH
Q 000254 1331 E----NGEMI---DKDDHLYFWFPLLAGLSELSFDPRPEIRK---SALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFD 1400 (1779)
Q Consensus 1331 ~----~~~~~---d~~~~~~lW~pLL~~L~~l~~d~R~eVR~---~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd 1400 (1779)
+ ..... |.++...-| ..|+ .||.+|-.++. +.++. ++||++.
T Consensus 348 ~~~~~eDdddDe~DDdD~~~dW----------------NLRkCSAAaLDVLanvf~-----------~elL~-~l~PlLk 399 (885)
T KOG2023|consen 348 EDADDEDDDDDEDDDDDAFSDW----------------NLRKCSAAALDVLANVFG-----------DELLP-ILLPLLK 399 (885)
T ss_pred cccccccccccccccccccccc----------------cHhhccHHHHHHHHHhhH-----------HHHHH-HHHHHHH
Confidence 0 00000 111111122 2344 34555543322 23343 7888887
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCcchhhhHH-HHHHHHHHHHHHHHHHHHH----HhH----------------------
Q 000254 1401 YVRHTIDPSGENSPGQGVDGDTGELDQDAWL-YETCTLALQLVVDLFVKFY----NTV---------------------- 1453 (1779)
Q Consensus 1401 ~l~~~~~~~~~~~~~~~~~~~s~~~~~~~Wl-~eT~~laL~~lv~lf~~yf----~~l---------------------- 1453 (1779)
.-..+ ..|. .|..++|++.+.+=-.++| ..|
T Consensus 400 ~~L~~----------------------~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWT 457 (885)
T KOG2023|consen 400 EHLSS----------------------EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWT 457 (885)
T ss_pred HHcCc----------------------chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeee
Confidence 65431 2243 5778888887765333332 111
Q ss_pred -------------HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhc
Q 000254 1454 -------------NPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKEAAKAT 1513 (1779)
Q Consensus 1454 -------------~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~~~g~~f~~~~W~~i~~~l~~l~~~t 1513 (1779)
..++..++.-|+.++-..|..+-..||++|-.|....|+.+ ...-..|++.|..+|..-
T Consensus 458 LsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eL-Vp~l~~IL~~l~~af~kY 529 (885)
T KOG2023|consen 458 LSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEEL-VPYLEYILDQLVFAFGKY 529 (885)
T ss_pred HhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHH
Confidence 02456677777888888999999999999999999999999 558888888888887643
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.60 E-value=72 Score=44.32 Aligned_cols=277 Identities=17% Similarity=0.232 Sum_probs=165.4
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccccCcHHH
Q 000254 1142 GCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM 1221 (1779)
Q Consensus 1142 ~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~IkSGW~~I 1221 (1779)
+...|+.+|.+|.--+|++..|+-.+ ++. .-|..+...+..++.+.+..-||..+=+.+..+-..-..- +|+-+
T Consensus 46 ~~~~~p~~Rq~aaVl~Rkl~~~~w~~--l~~-e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPel 119 (1075)
T KOG2171|consen 46 ATSADPQVRQLAAVLLRKLLTKHWSR--LSA-EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPEL 119 (1075)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHhhc--CCH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHH
Confidence 44568999999999999999885443 111 1244555555555666777778888777777765444333 79999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhccc
Q 000254 1222 FMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1301 (1779)
Q Consensus 1222 F~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~q~~~~niSL~AI~~L~~~~~~l~~~~ 1301 (1779)
...|-.+..+.++.+=..||-++..+...+=..+ ...+.++...|.+ +-+..+..|-..|+.-+-..+..+.+
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~----~~~~~~l~~lf~q-~~~d~s~~vr~~a~rA~~a~~~~~~~-- 192 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTL----QPHLDDLLRLFSQ-TMTDPSSPVRVAAVRALGAFAEYLEN-- 192 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc----chhHHHHHHHHHH-hccCCcchHHHHHHHHHHHHHHHhcc--
Confidence 9999998998999999999999887765542221 2233344443333 22222222444444433222222100
Q ss_pred ccccCCCchhhhcccCCCCCCCchhhhhccccccCCcchhhhhHHH-HHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccC
Q 000254 1302 LSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFETLRNHGH 1380 (1779)
Q Consensus 1302 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~~~~~lW~p-LL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~ 1380 (1779)
... .-...+--+| ++..+.+++.+.+.+.-..++..|-+++.+-+.
T Consensus 193 --------------------------~~~-------~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk 239 (1075)
T KOG2171|consen 193 --------------------------NKS-------EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK 239 (1075)
T ss_pred --------------------------chH-------HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH
Confidence 000 0012233556 888888888888888889999999888887766
Q ss_pred CCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHH----HH
Q 000254 1381 LFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVN----PL 1456 (1779)
Q Consensus 1381 ~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~s~~~~~~~Wl~eT~~laL~~lv~lf~~yf~~l~----~~ 1456 (1779)
.|++.+ ..|+.- .+....+ ++-...++..||..++.+ ..|=.... .+
T Consensus 240 ~l~~~l-~~ii~~----~l~Ia~n-----------------------~~l~~~~R~~ALe~ivs~-~e~Ap~~~k~~~~~ 290 (1075)
T KOG2171|consen 240 LLRPHL-SQIIQF----SLEIAKN-----------------------KELENSIRHLALEFLVSL-SEYAPAMCKKLALL 290 (1075)
T ss_pred HHHHHH-HHHHHH----HHHHhhc-----------------------ccccHHHHHHHHHHHHHH-HHhhHHHhhhchhh
Confidence 665422 222221 1111111 111135667788877764 33321121 24
Q ss_pred HHHHHHHHHHHHhcc----------------chhHHHHHHHHHHHHHHhhCCC
Q 000254 1457 LRKVLMLLVSFIKRP----------------HQSLAGIGIAAFVRLMSNAGNL 1493 (1779)
Q Consensus 1457 l~~~l~lL~~~i~q~----------------~e~lArig~s~l~~ll~~~g~~ 1493 (1779)
.+.+.-.+..+|+.. .++.+++|.+++-++-.+.|++
T Consensus 291 ~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~ 343 (1075)
T KOG2171|consen 291 GHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK 343 (1075)
T ss_pred hccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh
Confidence 556666666666531 2568999999999999988865
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.08 E-value=59 Score=45.10 Aligned_cols=139 Identities=22% Similarity=0.289 Sum_probs=98.1
Q ss_pred hHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCCCC
Q 000254 1344 FWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTG 1423 (1779)
Q Consensus 1344 lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~s~ 1423 (1779)
-|=-||.-|-...+++.+..|-.|+-+|+.+....|..+.+.. ..+.|+|..-.. ++
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~------~~l~~lf~q~~~--d~--------------- 171 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL------DDLLRLFSQTMT--DP--------------- 171 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH------HHHHHHHHHhcc--CC---------------
Confidence 4888999999999999999999999999999999999998633 234566654321 01
Q ss_pred cchhhhHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCCCHHHHH
Q 000254 1424 ELDQDAWLYETCTLALQLVVDLF---VKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWL 1500 (1779)
Q Consensus 1424 ~~~~~~Wl~eT~~laL~~lv~lf---~~yf~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~~~g~~f~~~~W~ 1500 (1779)
. .. +.-+.++|+..++... +.-.+.+..+++.++..+..+|+.+++.-|...-.+|-.|+...++.| ..+-.
T Consensus 172 --s-~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l-~~~l~ 246 (1075)
T KOG2171|consen 172 --S-SP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL-RPHLS 246 (1075)
T ss_pred --c-ch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH-HHHHH
Confidence 0 11 3455666666666544 233445566899999999999999998878888888888887766655 44445
Q ss_pred HHHHHHHHHH
Q 000254 1501 EVAESLKEAA 1510 (1779)
Q Consensus 1501 ~i~~~l~~l~ 1510 (1779)
.|+..-..++
T Consensus 247 ~ii~~~l~Ia 256 (1075)
T KOG2171|consen 247 QIIQFSLEIA 256 (1075)
T ss_pred HHHHHHHHHh
Confidence 5554444333
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=89.51 E-value=80 Score=41.21 Aligned_cols=425 Identities=15% Similarity=0.120 Sum_probs=214.5
Q ss_pred ceehHHHHHHHHhhcccccccchhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHH
Q 000254 1105 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1184 (1779)
Q Consensus 1105 r~FsLqKLveV~~~Nm~Ri~l~W~~iW~~l~~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe 1184 (1779)
.-+.+.||+-++...+. -.++...-.+...+.+--.|+|+.++..|+..|-.+. ..|+ -..++.+..
T Consensus 54 ~~~~~Krl~yl~l~~~~---~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~-----~~~l~~~v~ 120 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYL---HEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEM-----AEPLIPDVI 120 (526)
T ss_dssp SSHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHH-----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccch-----hhHHHHHHH
Confidence 45667777766543332 2234455566777777677889999888877776654 2222 233444455
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcccchhHHHHHHHHHHHH-HhhccCcccccccccH
Q 000254 1185 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKI-IRDYFPYITETETTTF 1263 (1779)
Q Consensus 1185 ~im~~~~~~eVre~vL~cl~qmi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I-~~d~l~~l~~~~~~~f 1263 (1779)
.++. ++++.||...+-|+.++.....+.+..+| +..+.....|.++.++..|...+..| ..+... ...+
T Consensus 121 ~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~------~~~~ 190 (526)
T PF01602_consen 121 KLLS-DPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSY------KSLI 190 (526)
T ss_dssp HHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHH------TTHH
T ss_pred HHhc-CCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHHccCcchh------hhhH
Confidence 5444 56679999999999999999887776664 55666666788888888898888877 222210 0123
Q ss_pred HHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhccc----CCCCCCCchhhhhccccccCCcc
Q 000254 1264 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAK----IPPASPRPVKELKLENGEMIDKD 1339 (1779)
Q Consensus 1264 ~d~I~cL~~F~~q~~~~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~d~~ 1339 (1779)
..++..|...... .++......+++|...+..-.... . . ...-.. +....+.+.-+....-..+..
T Consensus 191 ~~~~~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~~----~--~-~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~-- 260 (526)
T PF01602_consen 191 PKLIRILCQLLSD-PDPWLQIKILRLLRRYAPMEPEDA----D--K-NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP-- 260 (526)
T ss_dssp HHHHHHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHHH----H--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred HHHHHHhhhcccc-cchHHHHHHHHHHHhcccCChhhh----h--H-HHHHHHHHHHhhccccHHHHHHHHHHHHhhc--
Confidence 3333333333211 122233333333321111000000 0 0 000000 000000000000000000001
Q ss_pred hhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCC
Q 000254 1340 DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVD 1419 (1779)
Q Consensus 1340 ~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~ 1419 (1779)
...++-.+...|.++..+++++||--|+++|-.+...+ ...++ . ....+..++.. .
T Consensus 261 -~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--------~~~v~-~-~~~~~~~l~~~--~----------- 316 (526)
T PF01602_consen 261 -SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--------PPAVF-N-QSLILFFLLYD--D----------- 316 (526)
T ss_dssp -SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--------HHHHG-T-HHHHHHHHHCS--S-----------
T ss_pred -chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--------chhhh-h-hhhhhheecCC--C-----------
Confidence 12267777788888888888999999999988888776 22222 1 11222233210 0
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHhhCCCCCHHH
Q 000254 1420 GDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMSNAGNLFSDEK 1498 (1779)
Q Consensus 1420 ~~s~~~~~~~Wl~eT~~laL~~lv~lf~~yf~~l~~~l~~~l~lL~~~i~q~-~e~lArig~s~l~~ll~~~g~~f~~~~ 1498 (1779)
+ ......++..+..+-.. .-+..++.-|..++... ...+.+-.+..+..+.....+ .
T Consensus 317 ----d-------~~Ir~~~l~lL~~l~~~------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-----~ 374 (526)
T PF01602_consen 317 ----D-------PSIRKKALDLLYKLANE------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-----D 374 (526)
T ss_dssp ----S-------HHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-----S
T ss_pred ----C-------hhHHHHHHHHHhhcccc------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-----h
Confidence 1 13344555555544221 12445666666777433 445666666666666665522 2
Q ss_pred HHHHHHHHHHHHHhcchhhhccCCcchhhhhhhcccccccCCCCCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000254 1499 WLEVAESLKEAAKATLPDFSYLGSEDCMAEIAAKGQINVESSGSGLPDDDSENLRTQHLFACIADAKCRAAVQLLLIQAV 1578 (1779)
Q Consensus 1499 W~~i~~~l~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kcv~QLlliq~~ 1578 (1779)
.+..++.+.+++...-+.. .-..++.+
T Consensus 375 ~~~~v~~l~~ll~~~~~~~-----------------------------------------------------~~~~~~~i 401 (526)
T PF01602_consen 375 AEWYVDTLLKLLEISGDYV-----------------------------------------------------SNEIINVI 401 (526)
T ss_dssp HHHHHHHHHHHHHCTGGGC-----------------------------------------------------HCHHHHHH
T ss_pred HHHHHHHHHHhhhhccccc-----------------------------------------------------cchHHHHH
Confidence 3344555555543211000 00123334
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhccCCCCCCCCchhhHHHhHHHHHHHHHHHHhCCC
Q 000254 1579 MEIYNMYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILDRP 1658 (1779)
Q Consensus 1579 ~el~~~~~~~L~~~~l~~Ll~~L~~s~~fA~~fN~d~~LR~~L~k~g~~~~~~~PnLLkQE~~s~~~yl~iL~~l~~d~~ 1658 (1779)
.++..+. +.+-..-+..|.+.+.+ .....-++..+|=.|--.+. ... +....-+++.+...+.+.
T Consensus 402 ~~ll~~~-~~~~~~~l~~L~~~l~~-------~~~~~~~~~~~wilGEy~~~-----~~~-~~~~~~~~~~l~~~~~~~- 466 (526)
T PF01602_consen 402 RDLLSNN-PELREKILKKLIELLED-------ISSPEALAAAIWILGEYGEL-----IEN-TESAPDILRSLIENFIEE- 466 (526)
T ss_dssp HHHHHHS-TTTHHHHHHHHHHHHTS-------SSSHHHHHHHHHHHHHHCHH-----HTT-TTHHHHHHHHHHHHHTTS-
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHH-------hhHHHHHHHHHhhhcccCCc-----ccc-cccHHHHHHHHHHhhccc-
Confidence 4444332 22222334444444433 45555678888888743322 211 225667788888877753
Q ss_pred CCCcHHhHHHHHHHHHHHHHHH
Q 000254 1659 PTYEEADVESHLVNLCQEVLQL 1680 (1779)
Q Consensus 1659 ~~~~~~~i~~~L~~lc~~il~~ 1680 (1779)
..++...++..+.++...
T Consensus 467 ----~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 467 ----SPEVKLQILTALAKLFKR 484 (526)
T ss_dssp ----HHHHHHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHhh
Confidence 245666666666655543
No 20
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=84.12 E-value=1.2e+02 Score=38.81 Aligned_cols=97 Identities=15% Similarity=0.339 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhhch-hhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHH
Q 000254 1131 WHVLSDFFVNIGCSE-NLSIAIFAMDSLRQLSMKFLER-EELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVL 1208 (1779)
Q Consensus 1131 W~~l~~hf~~v~~~~-n~~va~~AvdsLrqL~~kfLe~-eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~ 1208 (1779)
-.+|...+..++-++ |+...-|..+++.-+ .|+.-. ..-.--.|...++-||..|+++. -.|.-.-|++-+.+|++
T Consensus 69 l~~L~~il~~v~kNPsnP~FnHylFEsi~~l-ir~~~~~~~~~v~~~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle 146 (435)
T PF03378_consen 69 LQHLTAILKEVSKNPSNPRFNHYLFESIGAL-IRFVCEADPEAVSQFEEALFPPFQEILQQD-VQEFIPYVFQILAQLLE 146 (435)
T ss_dssp HHHHHHHHHHHHTS---HHHHHHHHHHHHHH-HHHS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHH-HHhccCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 344555566666554 777788888888754 455332 11112256777888899888643 23566668888999999
Q ss_pred hcc-cccccCcHHHHHHHHHhh
Q 000254 1209 SRV-NNVKSGWKSMFMVFTTAA 1229 (1779)
Q Consensus 1209 ~~~-~~IkSGW~~IF~iL~~aa 1229 (1779)
.+. ..+-.-...+|..|-...
T Consensus 147 ~~~~~~~p~~y~~L~~~Ll~p~ 168 (435)
T PF03378_consen 147 LRPSSPLPDAYKQLFPPLLSPA 168 (435)
T ss_dssp HSS--S--TTTGGGHHHHTSGG
T ss_pred cCCCCCCcHHHHHHHHHHcCcc
Confidence 887 455445555666555443
No 21
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.97 E-value=1.3e+02 Score=40.28 Aligned_cols=179 Identities=15% Similarity=0.231 Sum_probs=114.4
Q ss_pred cchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCc---cccHHHHHHHHHHHHhhhcccccccCCC
Q 000254 1232 DHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNK---DISLNAIAFLRFCATKLAEGDLSASSSN 1308 (1779)
Q Consensus 1232 ~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~q~~~~---niSL~AI~~L~~~~~~l~~~~~~~~~~~ 1308 (1779)
..+..-..|=+++-.|..=- || .+...++|..|..=+.+.... .-+|.||+|+ |-+ +.
T Consensus 102 ~ep~~~s~Aaq~va~IA~~E---lP---~n~wp~li~~lv~nv~~~~~~~~k~~slealGyi--ce~-i~---------- 162 (859)
T KOG1241|consen 102 PEPRRPSSAAQCVAAIACIE---LP---QNQWPELIVTLVSNVGEEQASMVKESSLEALGYI--CED-ID---------- 162 (859)
T ss_pred CCCCccchHHHHHHHHHHhh---Cc---hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHH--Hcc-CC----------
Confidence 45556667778888776543 44 678999999998877766544 4567777776 211 10
Q ss_pred chhhhcccCCCCCCCchhhhhccccccCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHH
Q 000254 1309 KDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWE 1388 (1779)
Q Consensus 1309 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~ 1388 (1779)
|... .+.....-+-+..|..+ ..+...||-.|+..|.+.|.--+..|..+.=.
T Consensus 163 -------------pevl------------~~~sN~iLtaIv~gmrk--~e~s~~vRLaa~~aL~nsLef~~~nF~~E~er 215 (859)
T KOG1241|consen 163 -------------PEVL------------EQQSNDILTAIVQGMRK--EETSAAVRLAALNALYNSLEFTKANFNNEMER 215 (859)
T ss_pred -------------HHHH------------HHHHhHHHHHHHhhccc--cCCchhHHHHHHHHHHHHHHHHHHhhccHhhh
Confidence 0000 00011222223233222 34567899999999999999888888665433
Q ss_pred HHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHH
Q 000254 1389 RVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNP-LLRKVLMLLVSF 1467 (1779)
Q Consensus 1389 ~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~s~~~~~~~Wl~eT~~laL~~lv~lf~~yf~~l~~-~l~~~l~lL~~~ 1467 (1779)
.++-+| +-..+.. . +.+-++-|++.++++..-||+.+.+ |.+.++.+-..-
T Consensus 216 n~iMqv-------vcEatq~----------------~-----d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~a 267 (859)
T KOG1241|consen 216 NYIMQV-------VCEATQS----------------P-----DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAA 267 (859)
T ss_pred ceeeee-------eeecccC----------------C-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222 2111110 1 1255688999999999999999987 556689999999
Q ss_pred HhccchhHHHHHHHHHH
Q 000254 1468 IKRPHQSLAGIGIAAFV 1484 (1779)
Q Consensus 1468 i~q~~e~lArig~s~l~ 1484 (1779)
|..+|+.+|--|++-+-
T Consensus 268 mks~~deValQaiEFWs 284 (859)
T KOG1241|consen 268 MKSDNDEVALQAIEFWS 284 (859)
T ss_pred HcCCcHHHHHHHHHHHH
Confidence 99999999877766553
No 22
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.01 E-value=2.6e+02 Score=40.74 Aligned_cols=237 Identities=15% Similarity=0.274 Sum_probs=122.5
Q ss_pred cccccchhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhch---hhhhhhhhhhhhhhhHHHHHhhcC-----h
Q 000254 1121 NRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLER---EELANYNFQNEFMKPFVIVMRKSN-----A 1192 (1779)
Q Consensus 1121 ~Ri~l~W~~iW~~l~~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~---eEL~~~~FQ~~fL~Pfe~im~~~~-----~ 1192 (1779)
+.++..|..|..++ ..++...+..+...+.+.+-++.....+. .|.. .| .+-++.|+..+.+.. .
T Consensus 1063 ~nikSGWk~if~i~----~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~--sf-~d~v~cl~~F~~~~~~~~~s~ 1135 (1514)
T KOG0929|consen 1063 SNIKSGWKNIFKIF----TTAASDSSKNIVELAFETVSKILQELFENVFPQEMD--SF-KDCVKCLEEFTKNLGFPDDSL 1135 (1514)
T ss_pred hhhhhhhhHHHHHH----HHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhH--HH-HHHHHHHHHHHHhcCCCccch
Confidence 46778887766654 45555566677776766665444332221 1111 12 234566666554322 1
Q ss_pred HHHHHHHHHHHHHHHHh-cccc-----------cccCcHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhccCccccccc
Q 000254 1193 VEIRELIIRCVSQMVLS-RVNN-----------VKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETET 1260 (1779)
Q Consensus 1193 ~eVre~vL~cl~qmi~~-~~~~-----------IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~ 1260 (1779)
..| +++.-|.....+. ..+. -..||.+++..++.+..+....+-..+-+.+--|+.+|=+.+. .
T Consensus 1136 ~aI-~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~---~ 1211 (1514)
T KOG0929|consen 1136 NAI-RFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFS---K 1211 (1514)
T ss_pred HHH-HHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhcc---H
Confidence 222 2344555555554 2222 3469999999999887755666666788888777776644332 1
Q ss_pred ccHHHHHH-HHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhccccccCC-c
Q 000254 1261 TTFTDCVN-CLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMID-K 1338 (1779)
Q Consensus 1261 ~~f~d~I~-cL~~F~~q~~~~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d-~ 1338 (1779)
.--.++.. |+.=|..-+.+.+.+...=-+.-.|...+.. +.. -++. -
T Consensus 1212 ~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~--~v~-----------------------------lf~~~~ 1260 (1514)
T KOG0929|consen 1212 EFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQA--LVD-----------------------------LFTQFF 1260 (1514)
T ss_pred HHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHH--HHH-----------------------------HHHHHH
Confidence 11122211 1222222222211221100000011111100 000 0000 0
Q ss_pred chhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHH
Q 000254 1339 DDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFD 1400 (1779)
Q Consensus 1339 ~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd 1400 (1779)
+....+-=.+|.-|..++..+...+-...+..|.+.+...|..|+.+.|+.+++-+ .-+|+
T Consensus 1261 ~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~-~e~~~ 1321 (1514)
T KOG0929|consen 1261 KQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCI-LEAFK 1321 (1514)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHH-HHHHH
Confidence 00011112244445556666677888889999999999999999999999999844 35554
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=82.33 E-value=1.7e+02 Score=38.15 Aligned_cols=179 Identities=18% Similarity=0.282 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhhHHhhhcCCCCceehHHHHHHHHhhccccc--ccch-hhhHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 000254 1081 EAIIDFVKALCKVSMEELRSASDPRVFSLTKIVEIAHYNMNRI--RLVW-SSIWHVLSDFFVNIGCSENLSIAIFAMDSL 1157 (1779)
Q Consensus 1081 eai~~fv~ALc~vS~eel~~~~~pr~FsLqKLveV~~~Nm~Ri--~l~W-~~iW~~l~~hf~~v~~~~n~~va~~AvdsL 1157 (1779)
..+..+++.|+++- ..+.-|...+++.+... ..+. .... ..+-+.+...+. +.+..|.+.|+..+
T Consensus 188 ~~~~~~~~~L~~~l-------~~~~~~~q~~il~~l~~-~~~~~~~~~~~~~~i~~l~~~l~----s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 188 SLIPKLIRILCQLL-------SDPDPWLQIKILRLLRR-YAPMEPEDADKNRIIEPLLNLLQ----SSSPSVVYEAIRLI 255 (526)
T ss_dssp THHHHHHHHHHHHH-------TCCSHHHHHHHHHHHTT-STSSSHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhcc-------cccchHHHHHHHHHHHh-cccCChhhhhHHHHHHHHHHHhh----ccccHHHHHHHHHH
Confidence 44666677777653 13444555566555431 1111 1101 122233333332 55677777776665
Q ss_pred HHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcccchhHH
Q 000254 1158 RQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIV 1237 (1779)
Q Consensus 1158 rqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV 1237 (1779)
-.+. ...+ .-..+..|+..++. +.+.++|-.+++++.++.......+. ....++..+. .+++..+.
T Consensus 256 ~~l~----~~~~-----~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~---~~~d~~Ir 321 (526)
T PF01602_consen 256 IKLS----PSPE-----LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL---YDDDPSIR 321 (526)
T ss_dssp HHHS----SSHH-----HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH---CSSSHHHH
T ss_pred HHhh----cchH-----HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcccchhhh-hhhhhhheec---CCCChhHH
Confidence 4332 2221 23455667777665 77889999999999999888766666 4444433333 46678899
Q ss_pred HHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHH
Q 000254 1238 LLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1295 (1779)
Q Consensus 1238 ~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~q~~~~niSL~AI~~L~~~~~ 1295 (1779)
..+.+++..++++ .++...+..|..|+....+.++.-.++..+..++.
T Consensus 322 ~~~l~lL~~l~~~----------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 322 KKALDLLYKLANE----------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp HHHHHHHHHH--H----------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc----------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 9999999887754 47788899999998655555666666666655554
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=73.40 E-value=1.4e+02 Score=34.44 Aligned_cols=176 Identities=11% Similarity=0.111 Sum_probs=97.8
Q ss_pred ehHHHHHHHHhhcccccccchhhhHHHHH---HHHHHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhH
Q 000254 1107 FSLTKIVEIAHYNMNRIRLVWSSIWHVLS---DFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1183 (1779)
Q Consensus 1107 FsLqKLveV~~~Nm~Ri~l~W~~iW~~l~---~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pf 1183 (1779)
=.|++|-.+...| ........++..+. .-+.......+..|+..|+..+..++..+-.. +.. +-..++.++
T Consensus 26 ~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--~~~--~~~~~l~~L 99 (228)
T PF12348_consen 26 EALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--FEP--YADILLPPL 99 (228)
T ss_dssp HHHHHHHHHHHH---B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG--GHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHH--HHHHHHHHH
Confidence 3466677777666 12222344455555 33444333445678888998888887433221 111 123344444
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcc---Cccccccc
Q 000254 1184 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYF---PYITETET 1260 (1779)
Q Consensus 1184 e~im~~~~~~eVre~vL~cl~qmi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l---~~l~~~~~ 1260 (1779)
..... .....|++...+|+..|++..+ .+=+.++.++..+..++++.+-..+.+.+..++..+- ..+.. .
T Consensus 100 l~~~~-~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~--~ 172 (228)
T PF12348_consen 100 LKKLG-DSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK--S 172 (228)
T ss_dssp HHGGG----HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG----H
T ss_pred HHHHc-cccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc--c
Confidence 33222 3356799999999999998765 1125668999998888888888888888888887664 22221 1
Q ss_pred ccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHh
Q 000254 1261 TTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1296 (1779)
Q Consensus 1261 ~~f~d~I~cL~~F~~q~~~~niSL~AI~~L~~~~~~ 1296 (1779)
..+..++.++..+.... +.++--.|-..+|.....
T Consensus 173 ~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDA-DPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHH
Confidence 23577888888876543 456666666667655443
No 25
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=72.45 E-value=1.3e+02 Score=35.97 Aligned_cols=154 Identities=18% Similarity=0.326 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHHHHhccccccc-CcHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHH
Q 000254 1192 AVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCL 1270 (1779)
Q Consensus 1192 ~~eVre~vL~cl~qmi~~~~~~IkS-GW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL 1270 (1779)
....|-.+.+-+..+++.+...+++ |=.-|.+++..+..+++|+-+..+|+.+..|+..|- +. +...++-+++
T Consensus 95 ~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~----~~~e~lFd~~ 168 (262)
T PF14500_consen 95 PQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--IS----EFAEDLFDVF 168 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cc----hhHHHHHHHh
Confidence 3467888999999999888777753 667788999999999999999999999999988763 22 2333444433
Q ss_pred HHH-----HhCCCCc-cccHHHHH-HHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhccccccCCcchhhh
Q 000254 1271 IAF-----TNSRFNK-DISLNAIA-FLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLY 1343 (1779)
Q Consensus 1271 ~~F-----~~q~~~~-niSL~AI~-~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~~~~~ 1343 (1779)
..| .-.+.|+ .|+-.-+. -|+.| +........
T Consensus 169 ~cYFPI~F~pp~~dp~~IT~edLk~~L~~c-----------------------------------------l~s~~~fa~ 207 (262)
T PF14500_consen 169 SCYFPITFRPPPNDPYGITREDLKRALRNC-----------------------------------------LSSTPLFAP 207 (262)
T ss_pred hheeeeeeeCCCCCCCCCCHHHHHHHHHHH-----------------------------------------hcCcHhhHH
Confidence 332 2222221 12211110 01111 111111223
Q ss_pred hHHHH-HHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhh
Q 000254 1344 FWFPL-LAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLF 1396 (1779)
Q Consensus 1344 lW~pL-L~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLf 1396 (1779)
+=+|+ +..|. .+ -+.|+.-+++||-.++..||..==.+.|..+++.+=+
T Consensus 208 ~~~p~LleKL~---s~-~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 208 FAFPLLLEKLD---ST-SPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHc---CC-CcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 44564 33443 22 4459999999999999999965445677777765543
No 26
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=71.07 E-value=2.2e+02 Score=36.29 Aligned_cols=161 Identities=12% Similarity=0.170 Sum_probs=101.6
Q ss_pred hhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhccC
Q 000254 1174 NFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFP 1253 (1779)
Q Consensus 1174 ~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~ 1253 (1779)
+|.+-++.-||. +..+.+.-+|.+.|+.|.+|+.+....+...=.....-+--|+.+.++++++.|=+..-.+...|++
T Consensus 326 ~f~~iL~~l~Ev-L~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 326 HFAEILLLLLEV-LSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP 404 (516)
T ss_pred HHHHHHHHHHHH-HccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc
Confidence 466655555665 5566677899999999999999999888755444443333456778888999999888878777754
Q ss_pred cccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhcccc
Q 000254 1254 YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENG 1333 (1779)
Q Consensus 1254 ~l~~~~~~~f~d~I~cL~~F~~q~~~~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 1333 (1779)
. .|..-...|+.. .|..+.+-+|..+..+...+..-. . .
T Consensus 405 ~------~~I~~i~~~Ilt-----~D~~~~~~~iKm~Tkl~e~l~~Ee-----------L-------------------~ 443 (516)
T KOG2956|consen 405 L------QCIVNISPLILT-----ADEPRAVAVIKMLTKLFERLSAEE-----------L-------------------L 443 (516)
T ss_pred h------hHHHHHhhHHhc-----CcchHHHHHHHHHHHHHhhcCHHH-----------H-------------------H
Confidence 1 233333333332 444677767766654333221100 0 0
Q ss_pred ccCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcc-CCCChh
Q 000254 1334 EMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHG-HLFSLP 1385 (1779)
Q Consensus 1334 ~~~d~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G-~~f~~~ 1385 (1779)
.+. --+.=++...+......||+.|+=.|-.+...-| ..+.|.
T Consensus 444 ~ll---------~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePh 487 (516)
T KOG2956|consen 444 NLL---------PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPH 487 (516)
T ss_pred Hhh---------hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhH
Confidence 000 0122334444556678999999999999999888 666554
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=66.77 E-value=89 Score=35.97 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHHHHhCCccccCChHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000254 367 MRGKIVALELLKILLENAGAVFRTSDRFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFFPM 446 (1779)
Q Consensus 367 ~rsk~lsLeLl~~iL~~~~~~f~~~~~f~~~ik~~Lc~~Ll~n~~s~~~~vf~lsl~If~~L~~~~r~~LK~Eievf~~~ 446 (1779)
..-|.=+|.-|..++..+ .--...+.|...+| .+...+.+...+....|...+|.++..|..+++.++...++.+++.
T Consensus 21 W~~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~-~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGN-APEDFPPDFVECLR-QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp HHHHHHHHHHHHHHHHH--B-----HHHHHHHH----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CccccHHHHHHHHH-HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 334888999999999987 22223467888888 5556677766666778899999999999999999999999999988
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHhhC
Q 000254 447 IVLRVLENVAQPNFQQKMIVLRFLEKLCID 476 (1779)
Q Consensus 447 i~l~ile~~~~~~~~qk~~vLe~l~~l~~~ 476 (1779)
++.++-+++ . .-+..+.++|..+|..
T Consensus 99 Ll~~~~~~~--~--~i~~~a~~~L~~i~~~ 124 (228)
T PF12348_consen 99 LLKKLGDSK--K--FIREAANNALDAIIES 124 (228)
T ss_dssp HHHGGG-----H--HHHHHHHHHHHHHHTT
T ss_pred HHHHHcccc--H--HHHHHHHHHHHHHHHH
Confidence 765554322 1 2334556666666653
No 28
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=63.19 E-value=85 Score=34.26 Aligned_cols=135 Identities=17% Similarity=0.280 Sum_probs=78.8
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhcc--CCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCCCCcchhhhHH
Q 000254 1354 ELSFDPRPEIRKSALQVLFETLRNHG--HLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWL 1431 (1779)
Q Consensus 1354 ~l~~d~R~eVR~~AlqtLF~iL~~~G--~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~s~~~~~~~Wl 1431 (1779)
......+.-=|+.|++-|=+++..-. ..++...|+.+|+ -||-.+..-+.........+. +..+-...=+
T Consensus 11 ~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~~~-------s~~~~~~~RL 82 (155)
T PF11640_consen 11 RLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSSSA-------STATTAESRL 82 (155)
T ss_pred HHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCccc-------chHHHHHHHH
Confidence 33445667789999999999998765 8899999999998 566666554332211000000 0010011123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHH---HHHH--hhCCCCCHHHH
Q 000254 1432 YETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPH-QSLAGIGIAAFV---RLMS--NAGNLFSDEKW 1499 (1779)
Q Consensus 1432 ~eT~~laL~~lv~lf~~yf~~l~~~l~~~l~lL~~~i~q~~-e~lArig~s~l~---~ll~--~~g~~f~~~~W 1499 (1779)
+.+.-+++.+++.....+.... +..+++.+...+..++ +-+.-+|..+.+ .++. .....++...|
T Consensus 83 -~~~a~~lR~~ve~~~~~~k~kt--~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~~~~~ehL~~~~W 153 (155)
T PF11640_consen 83 -SSCASALRLFVEKSNSRLKRKT--VKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSYPPHVEHLSPKQW 153 (155)
T ss_pred -HHHHHHHHHHHHHHHhhcccch--HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCCChHHHHCcHhhc
Confidence 6677777777777666554332 4566777777777776 455556655443 3333 22244555555
No 29
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=62.01 E-value=2.6e+02 Score=38.46 Aligned_cols=162 Identities=17% Similarity=0.209 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHhccccccc-CcHHHHH-HHHHhhcccchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHH--
Q 000254 1195 IRELIIRCVSQMVLSRVNNVKS-GWKSMFM-VFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCL-- 1270 (1779)
Q Consensus 1195 Vre~vL~cl~qmi~~~~~~IkS-GW~~IF~-iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL-- 1270 (1779)
-|..+.+.+..+++.+...++| |=.-.|+ ++.++..+++|.-.-.+|..++.|.+-.++.=+- ...+-|.+-|-
T Consensus 143 ~R~~~~~Il~~~l~~~~~~l~s~~~D~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~F--~edlFeV~~CYFP 220 (1030)
T KOG1967|consen 143 ERLLQYEILEWFLDYRLEFLKSLGPDFLFTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGPF--TEDLFEVIACYFP 220 (1030)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCcc--HHHHHHHhheeee
Confidence 4677788888899999999999 9899998 7788888899999999999999998832321111 23455555554
Q ss_pred HHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhccccccCCcchhhhhHHHHHH
Q 000254 1271 IAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLA 1350 (1779)
Q Consensus 1271 ~~F~~q~~~~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~~~~~lW~pLL~ 1350 (1779)
..|.-.+.|.+. .+.=++-..+... ++..+....+-+|+|.
T Consensus 221 I~Fkppk~D~~~-I~reDL~~sLr~a--------------------------------------l~stP~Fa~~~lp~Ll 261 (1030)
T KOG1967|consen 221 ITFKPPKDDTIT-IRREDLKASLRSA--------------------------------------LVSTPSFAPFALPLLL 261 (1030)
T ss_pred eeccCCCCCccc-ccHHHHHHHHHHH--------------------------------------HhcCccchhhHHHHHH
Confidence 345555555332 1111111111111 1111223455666543
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHH
Q 000254 1351 GLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFD 1400 (1779)
Q Consensus 1351 ~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd 1400 (1779)
. =..++.+-+..-+++||-++...||..==.++|...+..+=+-|+.
T Consensus 262 E---KL~as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ei~~ 308 (1030)
T KOG1967|consen 262 E---KLNASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKPEIGQ 308 (1030)
T ss_pred H---HhccccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHHHHcc
Confidence 3 2235566788899999999999999552224566544433333333
No 30
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=61.32 E-value=64 Score=39.11 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHHHHHHHhcc-CCCChhhH
Q 000254 1359 PRPEIRKSALQVLFETLRNHG-HLFSLPLW 1387 (1779)
Q Consensus 1359 ~R~eVR~~AlqtLF~iL~~~G-~~f~~~~W 1387 (1779)
...+||..|++.+|+++..|| ..|+...+
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 388999999999999999999 45555444
No 31
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=60.68 E-value=2e+02 Score=32.00 Aligned_cols=61 Identities=25% Similarity=0.451 Sum_probs=45.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHh
Q 000254 1424 ELDQDAWLYETCTLALQLVVDLFVKFYNT------VNPLLRKVLMLLVSFIKRPHQ-SLAGIGIAAFVRLMSN 1489 (1779)
Q Consensus 1424 ~~~~~~Wl~eT~~laL~~lv~lf~~yf~~------l~~~l~~~l~lL~~~i~q~~e-~lArig~s~l~~ll~~ 1489 (1779)
..+.+.| ++|+.+.+..+.|..++ +..++..+++-+...+.+++| ++.+=|-.-++.++..
T Consensus 98 ~~d~~~W-----~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 98 EVDVEDW-----VLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFESFVSR 165 (174)
T ss_pred hccHHHH-----HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 3466778 79999999988886653 334566666666777778888 8888888888877754
No 32
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=58.06 E-value=36 Score=34.14 Aligned_cols=109 Identities=10% Similarity=0.037 Sum_probs=63.2
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccc
Q 000254 1136 DFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK 1215 (1779)
Q Consensus 1136 ~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~Ik 1215 (1779)
+++.+.-.+.+..++..|+..|..++... ++....-.+..++.++..++.. .+..++...+.++.++.........
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN---NDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 34444445667788888888888776321 2333333455778888877764 5789999999999999765432211
Q ss_pred cCcHH-HHHHHHHhhcccchhHHHHHHHHHHHHH
Q 000254 1216 SGWKS-MFMVFTTAAYDDHKNIVLLAFEIIEKII 1248 (1779)
Q Consensus 1216 SGW~~-IF~iL~~aa~~~~~~lV~~aF~~l~~I~ 1248 (1779)
-=|+. +...|-....+.+..+.+.+..++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 11111 2333333333345556666665555443
No 33
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.84 E-value=8.8e+02 Score=35.26 Aligned_cols=253 Identities=19% Similarity=0.221 Sum_probs=135.9
Q ss_pred CCceehHHHHHHHHhhcccccccchhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhch----------hhhhh
Q 000254 1103 DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLER----------EELAN 1172 (1779)
Q Consensus 1103 ~pr~FsLqKLveV~~~Nm~Ri~l~W~~iW~~l~~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~----------eEL~~ 1172 (1779)
+-|+=+|.-|+.|...--.-....|..+.+.+... ...+......+...+-++||-++.-||.. +-+..
T Consensus 857 evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~-~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~ 935 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGEHLLHGWQSVFEMLRSA-TDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLV 935 (1610)
T ss_pred eeeHHHHHHHHHHHhccchhhccccHHHHHHHHHH-hhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHH
Confidence 45677788888887665555556688888887732 23333335688899999999888888752 44555
Q ss_pred hhhhhhhh----hh---------HHHH-HhhcChHHHHHHHHHHHHHHHHhccccc--ccCcHHHHHHHHHhhcccchhH
Q 000254 1173 YNFQNEFM----KP---------FVIV-MRKSNAVEIRELIIRCVSQMVLSRVNNV--KSGWKSMFMVFTTAAYDDHKNI 1236 (1779)
Q Consensus 1173 ~~FQ~~fL----~P---------fe~i-m~~~~~~eVre~vL~cl~qmi~~~~~~I--kSGW~~IF~iL~~aa~~~~~~l 1236 (1779)
|.=|+.=+ .. |..- |..+.+.--..+.++.+.. ....+-+ --=|-.+|.-|.-.+.|...++
T Consensus 936 fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~ll~~L~~~~~dsr~eV 1013 (1610)
T KOG1848|consen 936 FSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIMLLVHLADLCEDSRAEV 1013 (1610)
T ss_pred HHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHHHHHHHHHHhccchHHH
Confidence 55564211 11 1111 1111111111111222111 0000001 1138888888888888888888
Q ss_pred HHHHHHHHHHHHhhccCcccccccccHHHHHHHHHH-HH-hCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhc
Q 000254 1237 VLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIA-FT-NSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEIS 1314 (1779)
Q Consensus 1237 V~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~-F~-~q~~~~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~ 1314 (1779)
=+-|.+++=.|++-|=..++ .....+|+--... .- +++ .++++--.- ++.+
T Consensus 1014 RngAvqtlfri~~Shg~~l~---~~aW~s~~w~vi~pLLd~~~-~q~~~ewng-----------------------keiq 1066 (1610)
T KOG1848|consen 1014 RNGAVQTLFRIFNSHGSKLG---TNAWASCCWLVIMPLLDSQP-IQNVSEWNG-----------------------KEIQ 1066 (1610)
T ss_pred hhhHHHHHHHHHhhhcccCC---hhHHHHHHHHHHHHHhcccc-ccchhhhcc-----------------------hhHh
Confidence 88899999999988877666 3444444332111 00 111 011110000 0000
Q ss_pred ccCCCCCCCchhhhhc----cc-cccCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhcc--CCCChhh
Q 000254 1315 AKIPPASPRPVKELKL----EN-GEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHG--HLFSLPL 1386 (1779)
Q Consensus 1315 ~~i~~~~~~~~~~~~~----~~-~~~~d~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G--~~f~~~~ 1386 (1779)
.+..+.+-.+ -.|.. +. ..+.........|--+|.=|-++..|.-+|+-.+||..+...+..+. +.+...+
T Consensus 1067 kqwtet~~lt-isgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~ 1144 (1610)
T KOG1848|consen 1067 KQWTETSCLT-ISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATF 1144 (1610)
T ss_pred hhhhhhhhhh-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchH
Confidence 0000000000 00000 00 01112234567899999999999999999999999999999998774 4444444
No 34
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=55.45 E-value=7.6e+02 Score=34.41 Aligned_cols=237 Identities=16% Similarity=0.174 Sum_probs=140.2
Q ss_pred Hhhhc-CCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhH-HhhhhccCCCCCCCCCCCCCCCCCcchhhh
Q 000254 1352 LSELS-FDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIF-DYVRHTIDPSGENSPGQGVDGDTGELDQDA 1429 (1779)
Q Consensus 1352 L~~l~-~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPif-d~l~~~~~~~~~~~~~~~~~~~s~~~~~~~ 1429 (1779)
+.++- .|.+.|||-+||..+=.++..+|+.++.+. ..+| |+| +.++.
T Consensus 574 l~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL-----~~~L-~il~eRl~n------------------------- 622 (1233)
T KOG1824|consen 574 LQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL-----PRTL-PILLERLGN------------------------- 622 (1233)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh-----HHHH-HHHHHHHhc-------------------------
Confidence 34443 688999999999999999999997665432 2233 444 44533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 000254 1430 WLYETCTLALQLVVDLFVKFYN-TVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLEVAESLKE 1508 (1779)
Q Consensus 1430 Wl~eT~~laL~~lv~lf~~yf~-~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~~~g~~f~~~~W~~i~~~l~~ 1508 (1779)
.-|+.-|.+.++.++..=.+ .+.+.+.+++..|..|.++.+..+.--...++..|+...+..+..+..+.++.-+-.
T Consensus 623 --EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~ 700 (1233)
T KOG1824|consen 623 --EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPP 700 (1233)
T ss_pred --hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhh
Confidence 15667778888887766544 356789999999999999998888888888889999999999988777766665544
Q ss_pred HHHhcchhhhccCCcchhhhhhhcccccccCCCCCCCCCChhhhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000254 1509 AAKATLPDFSYLGSEDCMAEIAAKGQINVESSGSGLPDDDSENLRTQHLFAC--IADAKCRAAVQLLLIQAVMEIYNMYR 1586 (1779)
Q Consensus 1509 l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~kcv~QLlliq~~~el~~~~~ 1586 (1779)
+...|.-+..+ .+..+. ....+--|++ .-.=..+++|.+..+
T Consensus 701 Lisesdlhvt~-----------------------------------~a~~~L~tl~~~~ps~l~-~~~~~iL~~ii~ll~ 744 (1233)
T KOG1824|consen 701 LISESDLHVTQ-----------------------------------LAVAFLTTLAIIQPSSLL-KISNPILDEIIRLLR 744 (1233)
T ss_pred hhhHHHHHHHH-----------------------------------HHHHHHHHHHhcccHHHH-HHhhhhHHHHHHHhh
Confidence 44333221100 000000 0000000110 111223344444444
Q ss_pred -cCCCHHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhccCCCCCCCCchhhHHHhHHHHHHHHHHHHhCCCC
Q 000254 1587 -PCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEFGSMTQMQDPPLLRLENESFQICLTFLQNIILDRPP 1659 (1779)
Q Consensus 1587 -~~L~~~~l~~Ll~~L~~s~~fA~~fN~d~~LR~~L~k~g~~~~~~~PnLLkQE~~s~~~yl~iL~~l~~d~~~ 1659 (1779)
.-|....+..++..+...+.. +.=+-++..-..+.-+.. .++.--.|-||--.|.|-+...|-+.+-+..+
T Consensus 745 Spllqg~al~~~l~~f~alV~t-~~~~l~y~~l~s~lt~PV-~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~ 816 (1233)
T KOG1824|consen 745 SPLLQGGALSALLLFFQALVIT-KEPDLDYISLLSLLTAPV-YEQVTDGLHKQAYYSIAKCVAALTCACPQKSK 816 (1233)
T ss_pred CccccchHHHHHHHHHHHHHhc-CCCCccHHHHHHHHcCCc-ccccccchhHHHHHHHHHHHHHHHHhccccch
Confidence 334445555555544444332 222222333333333332 23333468899999999999999888775443
No 35
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=55.15 E-value=83 Score=34.64 Aligned_cols=120 Identities=13% Similarity=0.222 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhHHhhhc---------CCCCceehHHHHHHHHhhcccccc------cchhhhHHHHHHHHHHhccCCCHH
Q 000254 1084 IDFVKALCKVSMEELRS---------ASDPRVFSLTKIVEIAHYNMNRIR------LVWSSIWHVLSDFFVNIGCSENLS 1148 (1779)
Q Consensus 1084 ~~fv~ALc~vS~eel~~---------~~~pr~FsLqKLveV~~~Nm~Ri~------l~W~~iW~~l~~hf~~v~~~~n~~ 1148 (1779)
....+.||.++..+... ...+|.|+|.-|-.+-..+...+. ..-.-+++.+..++.+.+.+++..
T Consensus 9 ~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~ 88 (168)
T PF12783_consen 9 FLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFP 88 (168)
T ss_pred HHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 45678899998433221 123578999888877776666554 223456678888899988887777
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhhhhhhhh-hhhhHHH-HHhhc-ChHHHHHHHHHHHHHHHH
Q 000254 1149 IAIFAMDSLRQLSMKFLEREELANYNFQNE-FMKPFVI-VMRKS-NAVEIRELIIRCVSQMVL 1208 (1779)
Q Consensus 1149 va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~-fL~Pfe~-im~~~-~~~eVre~vL~cl~qmi~ 1208 (1779)
+-..++..+..+..+|-. . .+.|-+ ||.-.-. ++... ...+-|+.+|+++..+..
T Consensus 89 i~~~slri~~~l~~~~~~--~---Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 89 IFSRSLRIFLTLLSRFRS--H---LKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 777777777777766532 1 122322 2222222 33322 245788999999988753
No 36
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=54.77 E-value=21 Score=27.72 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=20.9
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHHHH
Q 000254 1350 AGLSELSFDPRPEIRKSALQVLFETLR 1376 (1779)
Q Consensus 1350 ~~L~~l~~d~R~eVR~~AlqtLF~iL~ 1376 (1779)
-.+.++..|+.++||..|+..|=++.+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 345566779999999999999987765
No 37
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=53.13 E-value=1.2e+02 Score=33.88 Aligned_cols=110 Identities=17% Similarity=0.272 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccccCcHHH-HHH
Q 000254 1146 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM-FMV 1224 (1779)
Q Consensus 1146 n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~IkSGW~~I-F~i 1224 (1779)
|+.||.-|+-++.+|+.+|=.-=| .+ -|...-+-+..++.||...+.++.+++....-..+ ..+ +.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve--------~~-~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE--------PY-LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH--------hH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHH
Confidence 467888899999999977632211 01 12222233466899999999999999976433333 223 344
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHH
Q 000254 1225 FTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLI 1271 (1779)
Q Consensus 1225 L~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~ 1271 (1779)
+. +-.|+++.+...|=..+..+....-+... ...|.+||.-|.
T Consensus 69 l~-~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i---~~~~~e~i~~l~ 111 (178)
T PF12717_consen 69 LK-LLVDENPEIRSLARSFFSELLKKRNPNII---YNNFPELISSLN 111 (178)
T ss_pred HH-HHcCCCHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHh
Confidence 44 44788999998888888877665322222 244555444333
No 38
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=52.64 E-value=1.3e+02 Score=36.51 Aligned_cols=106 Identities=13% Similarity=0.246 Sum_probs=71.3
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcc
Q 000254 1132 HVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV 1211 (1779)
Q Consensus 1132 ~~l~~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~ 1211 (1779)
.++.....-...|++..||..|+.+|...+ .+++ .+-.+++.-|...+. ..+.+|+-..++++..++..+|
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~--Lld~------~~a~~~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCC--LLDK------ELAKEHLPLFLQALQ-KDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HhCh------HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcC
Confidence 344444555667788899999999998766 4443 233444555666664 3488999999999999999999
Q ss_pred cccccCcH---------HHHHHHHHhhcccchhHHHHHHHHHHH
Q 000254 1212 NNVKSGWK---------SMFMVFTTAAYDDHKNIVLLAFEIIEK 1246 (1779)
Q Consensus 1212 ~~IkSGW~---------~IF~iL~~aa~~~~~~lV~~aF~~l~~ 1246 (1779)
..+-..+. .+..+|.....+.++++-..|-+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~K 140 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCK 140 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77654433 466666665555555555555555543
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=46.02 E-value=1.4e+02 Score=29.78 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=64.0
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCCCCcchhh
Q 000254 1349 LAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQD 1428 (1779)
Q Consensus 1349 L~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~s~~~~~~ 1428 (1779)
+..|.++..+..+++|..|+.+|..+-.. +++.+..++..=.+|.+-.+.... +..
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~~-----------------~~~-- 64 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKSE-----------------DEE-- 64 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhCC-----------------CHH--
Confidence 34455556677799999999998886653 366777777733445554443310 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 000254 1429 AWLYETCTLALQLVVDLFVKFYNTVNPLL-RKVLMLLVSFIKRPHQSLAGIGIAAFVRLM 1487 (1779)
Q Consensus 1429 ~Wl~eT~~laL~~lv~lf~~yf~~l~~~l-~~~l~lL~~~i~q~~e~lArig~s~l~~ll 1487 (1779)
+...+.-+|..++.-.. .....+. .+++..|..++...+....+.++.+|.++.
T Consensus 65 --v~~~a~~~L~~l~~~~~---~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 65 --VVKAALWALRNLAAGPE---DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred --HHHHHHHHHHHHccCcH---HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 11223344444443221 1112222 247888888888888888888888876653
No 40
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=44.60 E-value=3.1e+02 Score=27.62 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 000254 1363 IRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLV 1442 (1779)
Q Consensus 1363 VR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~s~~~~~~~Wl~eT~~laL~~l 1442 (1779)
.|++++-.|-.+-..-|.. +...++.++=|++..+.. +...-.| ....+|..+
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~D-------------------~d~rVRy---~AcEaL~ni 54 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----ISKYLDEILPPVLKCFDD-------------------QDSRVRY---YACEALYNI 54 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcCC-------------------CcHHHHH---HHHHHHHHH
Confidence 4778888777776655544 788889999999987732 1111222 234455555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 000254 1443 VDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLM 1487 (1779)
Q Consensus 1443 v~lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll 1487 (1779)
++++. +.+-+.+.++|+.|...+...++. .|.|..-|-+++
T Consensus 55 ~k~~~---~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 55 SKVAR---GEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLL 95 (97)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHh
Confidence 55443 344457788899988888887776 456666665554
No 41
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=40.83 E-value=1.4e+02 Score=33.17 Aligned_cols=93 Identities=14% Similarity=0.221 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 000254 1360 RPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLAL 1439 (1779)
Q Consensus 1360 R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~s~~~~~~~Wl~eT~~laL 1439 (1779)
.+.||+-|+-+|-++...|+....+ |-. .++..++. ++ ..-+..|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~--~~~-------~l~~~L~D--------------------~~-----~~VR~~al 46 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP--YLP-------NLYKCLRD--------------------ED-----PLVRKTAL 46 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh--HHH-------HHHHHHCC--------------------CC-----HHHHHHHH
Confidence 3789999999999999999876633 221 22222321 00 13345566
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh
Q 000254 1440 QLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1489 (1779)
Q Consensus 1440 ~~lv~lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~~ 1489 (1779)
..+..|..+-+-... +.++..+..|+..+++.++..+..+|.++...
T Consensus 47 ~~Ls~Li~~d~ik~k---~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 47 LVLSHLILEDMIKVK---GQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHcCceeeh---hhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 667776655433333 23445666788999999999999999988877
No 42
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=40.23 E-value=1.2e+03 Score=32.51 Aligned_cols=274 Identities=12% Similarity=0.106 Sum_probs=139.5
Q ss_pred cChHHHHHHHHHHHHHHHHhccccccc-CcHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhccCcccccccccHHHHHH
Q 000254 1190 SNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVN 1268 (1779)
Q Consensus 1190 ~~~~eVre~vL~cl~qmi~~~~~~IkS-GW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~ 1268 (1779)
+.+.|+|=|...-+..=++.-.-++.- .-+-+..++--.-.|.++++-..|..|+-.+++. ++ .+.....|+
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK----vk---e~~le~~ve 88 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK----VK---EDQLETIVE 88 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh----ch---HHHHHHHHH
Confidence 344555555555555544444333331 3333444444445577888889999999887743 44 456677777
Q ss_pred HHHHHHhCCCCccccHHHHHHHHHHHHhhhc--ccccccCCCchhhhccc----CCCCCCCch-----hhhhccc-cccC
Q 000254 1269 CLIAFTNSRFNKDISLNAIAFLRFCATKLAE--GDLSASSSNKDKEISAK----IPPASPRPV-----KELKLEN-GEMI 1336 (1779)
Q Consensus 1269 cL~~F~~q~~~~niSL~AI~~L~~~~~~l~~--~~~~~~~~~~~~~~~~~----i~~~~~~~~-----~~~~~~~-~~~~ 1336 (1779)
-|..-.-...++.--+.||++.-.++. ++- +.... ...-+.+.++ +...++..+ -+...+. ..+.
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~n-l~P~~~~~la--~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIAN-LPPSSSSFLA--ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhc-CCCccccccc--cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 665532222233344556665433322 110 00000 0000000000 000000000 0000000 0000
Q ss_pred CcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCC
Q 000254 1337 DKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQ 1416 (1779)
Q Consensus 1337 d~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~ 1416 (1779)
+-...+-..+|..+-.-..-+|..||++|+..|=.. ..+|..+ . |..++=-+++.+..+.
T Consensus 166 --~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~l-a~~~~~~---l----y~~li~~Ll~~L~~~~---------- 225 (1233)
T KOG1824|consen 166 --TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHL-ASSCNRD---L----YVELIEHLLKGLSNRT---------- 225 (1233)
T ss_pred --ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHH-HHhcCHH---H----HHHHHHHHHhccCCCC----------
Confidence 001124456777777777789999999999877554 3444433 2 3333322234442211
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHhhCCC
Q 000254 1417 GVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFI---KRPHQSLAGIGIAAFVRLMSNAGNL 1493 (1779)
Q Consensus 1417 ~~~~~s~~~~~~~Wl~eT~~laL~~lv~lf~~yf~~l~~~l~~~l~lL~~~i---~q~~e~lArig~s~l~~ll~~~g~~ 1493 (1779)
... - -.|.++++..+++--.+-|. ..++.+.-++..+. ....|.+-.....+|+-|+..+-..
T Consensus 226 ---------q~~-~-~rt~Iq~l~~i~r~ag~r~~---~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 226 ---------QMS-A-TRTYIQCLAAICRQAGHRFG---SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred ---------chH-H-HHHHHHHHHHHHHHhcchhh---cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence 111 1 26778888888876555443 33444444455544 6677899999999999999887766
Q ss_pred CCHHHHHHHHHHHHH
Q 000254 1494 FSDEKWLEVAESLKE 1508 (1779)
Q Consensus 1494 f~~~~W~~i~~~l~~ 1508 (1779)
. -.+|.+++...-+
T Consensus 292 i-~p~~pei~~l~l~ 305 (1233)
T KOG1824|consen 292 I-LPHVPEIINLCLS 305 (1233)
T ss_pred h-cccchHHHHHHHH
Confidence 6 4678887765443
No 43
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=39.86 E-value=5.5e+02 Score=31.61 Aligned_cols=120 Identities=13% Similarity=0.232 Sum_probs=79.3
Q ss_pred hhhhhhHH----HHHhhcChHHHHH-HHHHHHHHHHHhcccccccCcHHHHHHHHHh-----hc--ccchhHHHHHHHHH
Q 000254 1177 NEFMKPFV----IVMRKSNAVEIRE-LIIRCVSQMVLSRVNNVKSGWKSMFMVFTTA-----AY--DDHKNIVLLAFEII 1244 (1779)
Q Consensus 1177 ~~fL~Pfe----~im~~~~~~eVre-~vL~cl~qmi~~~~~~IkSGW~~IF~iL~~a-----a~--~~~~~lV~~aF~~l 1244 (1779)
+.|+.|+. .-+.++ .++.|+ -||.++..+|..-++.+...=..||+.+=.+ .+ .+.|+.-..=|..+
T Consensus 66 ~~~i~~l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL 144 (319)
T PF08767_consen 66 NNFIPPLLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLL 144 (319)
T ss_dssp HHTHHHHHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHH
Confidence 44555542 233433 344443 2788888888887777777666666433211 12 24578888889999
Q ss_pred HHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhh
Q 000254 1245 EKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1298 (1779)
Q Consensus 1245 ~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~q~~~~niSL~AI~~L~~~~~~l~ 1298 (1779)
+.|+..+++.+...+++.|..+++++. ++.+....+|+-.++..+.....++.
T Consensus 145 ~~i~~~~f~~l~~lp~~~f~~~idsi~-wg~kh~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 145 RAINEHCFPALLQLPPEQFKLVIDSIV-WGFKHTNREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHHHHTHHHHHS-HHHHHHHHHHHH-HHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999988877665555789999999984 56666667899999888876665543
No 44
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.30 E-value=1.1e+03 Score=31.77 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHHHHHhhc---hhhhhhhhhhhhhhhhHHHH---HhhcChHHHHHHHHHHHHHHHHhccccccc-Cc
Q 000254 1146 NLSIAIFAMDSLRQLSMKFLE---REELANYNFQNEFMKPFVIV---MRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GW 1218 (1779)
Q Consensus 1146 n~~va~~AvdsLrqL~~kfLe---~eEL~~~~FQ~~fL~Pfe~i---m~~~~~~eVre~vL~cl~qmi~~~~~~IkS-GW 1218 (1779)
+...+..-.+.|..+.+|.=+ .....+-+-++.+| ||.| +....+.+.-...+.-+.+++..+-.|||- +-
T Consensus 273 D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVL--FeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaL 350 (938)
T KOG1077|consen 273 DPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVL--FEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLAL 350 (938)
T ss_pred CchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHH--HHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhH
Confidence 456666666666666555432 22233344455565 5543 333344555555555566778888778774 55
Q ss_pred HHHHHHHH
Q 000254 1219 KSMFMVFT 1226 (1779)
Q Consensus 1219 ~~IF~iL~ 1226 (1779)
.++-.+++
T Consensus 351 Esm~~L~s 358 (938)
T KOG1077|consen 351 ESMCKLAS 358 (938)
T ss_pred HHHHHHHh
Confidence 54444433
No 45
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=38.79 E-value=1.9e+02 Score=35.64 Aligned_cols=111 Identities=12% Similarity=0.229 Sum_probs=71.9
Q ss_pred CcHHHHHHHHH-HHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 000254 1359 PRPEIRKSALQ-VLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTL 1437 (1779)
Q Consensus 1359 ~R~eVR~~Alq-tLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~s~~~~~~~Wl~eT~~l 1437 (1779)
.-|+.|..-+= .+-.++...|..+.+ .-..|++.|.-|.++-+...... -.+-+..
T Consensus 83 ~~p~~r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d~~~----------------------yPe~r~~ 139 (319)
T PF08767_consen 83 SVPDAREPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKDFEE----------------------YPEHRVN 139 (319)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSSTSSS----------------------SHHHHHH
T ss_pred CCccccChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhhhh----------------------ChHHHHH
Confidence 44555555444 444555567776654 44677777777777777432111 1133344
Q ss_pred HHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCC
Q 000254 1438 ALQLVVDLFVKFYNTVNP----LLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGN 1492 (1779)
Q Consensus 1438 aL~~lv~lf~~yf~~l~~----~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~~~g~ 1492 (1779)
=.+.+..+-..+|+.+.. .+..+++-+.|.++..+..++..|..++..++.+...
T Consensus 140 ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 140 FFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 444444455555666542 5888999999999999999999999999999986655
No 46
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=36.84 E-value=4.4e+02 Score=33.73 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=68.7
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCCCCcchh
Q 000254 1348 LLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQ 1427 (1779)
Q Consensus 1348 LL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~s~~~~~ 1427 (1779)
+..-|..+..+++.+-|++|+.-|..++.. +.| ..|+..|.++|.-+|+.+....+
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e--~sf--svWeq~f~~iL~~l~EvL~d~~~-------------------- 343 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCE--GSF--SVWEQHFAEILLLLLEVLSDSED-------------------- 343 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHc--cch--hHHHHHHHHHHHHHHHHHccchh--------------------
Confidence 333444455678999999999999988874 345 57999999999999998854211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 000254 1428 DAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAF 1483 (1779)
Q Consensus 1428 ~~Wl~eT~~laL~~lv~lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l 1483 (1779)
..-..+||+-+.++.+.-=..+-..-.-...-++.+-+..++...+.+..|.
T Consensus 344 ----~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~ 395 (516)
T KOG2956|consen 344 ----EIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDC 395 (516)
T ss_pred ----hHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 1224678888888776533222221122333344555566665555555554
No 47
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=36.52 E-value=2.2e+02 Score=28.68 Aligned_cols=72 Identities=13% Similarity=0.268 Sum_probs=53.0
Q ss_pred hhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q 000254 1176 QNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1249 (1779)
Q Consensus 1176 Q~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~ 1249 (1779)
-+.+++|....+. ..+..||....+++.++.......+-.--.-||..|.....|.+++ |+.|-+.|..++.
T Consensus 25 l~~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 25 LDEILPPVLKCFD-DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhc
Confidence 3566677665443 4577899999999999998876666556788898888888887776 6666677765554
No 48
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=36.18 E-value=6.5e+02 Score=32.31 Aligned_cols=58 Identities=9% Similarity=0.152 Sum_probs=41.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCCCHHHHHH
Q 000254 1444 DLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSDEKWLE 1501 (1779)
Q Consensus 1444 ~lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~~~g~~f~~~~W~~ 1501 (1779)
.+...||..++..+-++...+..|+......+-.-|..|+..+..+.+.....+.|+.
T Consensus 280 ~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~ 337 (728)
T KOG4535|consen 280 TLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKA 337 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccc
Confidence 3445677666666666666666677666667777778888888888887777888874
No 49
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=35.61 E-value=1.1e+03 Score=30.56 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=40.4
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHH-HhccCCCChhhHHHHHHHhhhhhHHhhhh
Q 000254 1348 LLAGLSELSFDPRPEIRKSALQVLFETL-RNHGHLFSLPLWERVFDSVLFPIFDYVRH 1404 (1779)
Q Consensus 1348 LL~~L~~l~~d~R~eVR~~AlqtLF~iL-~~~G~~f~~~~W~~i~~~VLfPifd~l~~ 1404 (1779)
++.+|.....-...-|=.--+..+.++| ..||..+....|+.+++ ++.-+++.+..
T Consensus 302 vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~-i~~~~~~~~~~ 358 (464)
T PF11864_consen 302 VLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILD-IIEEIFDKIQP 358 (464)
T ss_pred HHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHH-HHHHHHhhccc
Confidence 7777777665444446667777888888 99999999999998876 44446666543
No 50
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.46 E-value=3.6e+02 Score=35.87 Aligned_cols=111 Identities=14% Similarity=0.234 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhh-hhhhhhHHHHHh--hcChHHHHHHHHHHHHHHH
Q 000254 1131 WHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQ-NEFMKPFVIVMR--KSNAVEIRELIIRCVSQMV 1207 (1779)
Q Consensus 1131 W~~l~~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ-~~fL~Pfe~im~--~~~~~eVre~vL~cl~qmi 1207 (1779)
-+++-+-|.+...|+++.+|..|+.++.|..+ +....+ -+. ..|| |.++. +..+++||..|=+.+.-++
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~--~~~qal---~~~iD~Fl---e~lFalanD~~~eVRk~vC~alv~Ll 243 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII--IQTQAL---YVHIDKFL---EILFALANDEDPEVRKNVCRALVFLL 243 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheee--cCcHHH---HHHHHHHH---HHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 35677888888899999999999999998752 111111 011 1233 44443 4467899999999999999
Q ss_pred HhcccccccCcHHHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q 000254 1208 LSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1249 (1779)
Q Consensus 1208 ~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~ 1249 (1779)
+.+-+++..--+.|.+-.-...+|.++++.--|.+-.--+++
T Consensus 244 evr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 244 EVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 999999999888888777666778888876666665554443
No 51
>PRK09687 putative lyase; Provisional
Probab=34.84 E-value=5.6e+02 Score=30.87 Aligned_cols=91 Identities=11% Similarity=0.071 Sum_probs=52.1
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccccCc
Q 000254 1139 VNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGW 1218 (1779)
Q Consensus 1139 ~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~IkSGW 1218 (1779)
...-.|++..||..|+..|+++. ..+.+.++.. +..+.+..+|...+..+.++-.... +=
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~--------------~~~~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~~~-----~~ 88 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRG--------------GQDVFRLAIE-LCSSKNPIERDIGADILSQLGMAKR-----CQ 88 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcC--------------cchHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCcc-----ch
Confidence 33346778888888888777543 1122233333 2345677888888888887522111 01
Q ss_pred HHHHHHHHHh-hcccchhHHHHHHHHHHHHHh
Q 000254 1219 KSMFMVFTTA-AYDDHKNIVLLAFEIIEKIIR 1249 (1779)
Q Consensus 1219 ~~IF~iL~~a-a~~~~~~lV~~aF~~l~~I~~ 1249 (1779)
..+|..|... ..|+++.+-..|...+-.+..
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCK 120 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc
Confidence 2466666644 455555555577777765543
No 52
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=34.58 E-value=3.8e+02 Score=28.88 Aligned_cols=64 Identities=9% Similarity=0.136 Sum_probs=47.5
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhh
Q 000254 412 STLMIVFQLSCSIFMSLVSRFRAGLKAEIG--VFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLCI 475 (1779)
Q Consensus 412 s~~~~vf~lsl~If~~L~~~~r~~LK~Eie--vf~~~i~l~ile~~~~~~~~qk~~vLe~l~~l~~ 475 (1779)
+..+.+.-+++.+.-.++.+...++..||. -|+.+++.+++..+.+++..-|..+|+++.....
T Consensus 50 ~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 50 NKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 346777778888888999999999988885 7888855678765434455557778887777653
No 53
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.26 E-value=1.7e+03 Score=32.02 Aligned_cols=425 Identities=16% Similarity=0.199 Sum_probs=213.4
Q ss_pred hhhhHHHHHhhcChHHHHHHHHHHHHHHHHhccccc---ccCcHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhccCcc
Q 000254 1179 FMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNV---KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYI 1255 (1779)
Q Consensus 1179 fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~I---kSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d~l~~l 1255 (1779)
.|.||.. ..+.+.-|...++.|+..++.+++..- .+--..+|+++..++. ..|.+=..|-+.+..|..+-- .-
T Consensus 97 ~l~~~~~--~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h-~~pkvRk~a~~~i~~VL~~p~-~~ 172 (1176)
T KOG1248|consen 97 ILAPFLT--AESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAH-KKPKVRKAAQRGIAAVLKGPP-FA 172 (1176)
T ss_pred HHHHHHh--hhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHcCCC-CC
Confidence 4455554 234566788999999999998865422 2223455677766554 467777788888888876421 11
Q ss_pred cccc-cc---cHHHHHHHHHHHHhCCCCccc-cHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhc
Q 000254 1256 TETE-TT---TFTDCVNCLIAFTNSRFNKDI-SLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKL 1330 (1779)
Q Consensus 1256 ~~~~-~~---~f~d~I~cL~~F~~q~~~~ni-SL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 1330 (1779)
+..+ +. ....|+.-+..+.... .++ -+..+.+|+.. +
T Consensus 173 ~~~~HpA~~~vak~cl~~~e~~~~~a--~~t~v~~~L~Ll~~~---~--------------------------------- 214 (1176)
T KOG1248|consen 173 PDAEHPASLSVAKFCLALIESKLGSA--ENTTVLRSLMLLRDV---L--------------------------------- 214 (1176)
T ss_pred ccccchHHHHHHHHHHHHHHhhhchH--HHHHHHHHHHHHHHh---h---------------------------------
Confidence 1000 01 1122222222222200 010 01112222110 0
Q ss_pred cccccCCcchhhhhH-HHHHHHHhhh----cCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhHHhhhhc
Q 000254 1331 ENGEMIDKDDHLYFW-FPLLAGLSEL----SFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSVLFPIFDYVRHT 1405 (1779)
Q Consensus 1331 ~~~~~~d~~~~~~lW-~pLL~~L~~l----~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~ 1405 (1779)
.. | .++...|.+. +.-....|+..++|+|-+.+..|...++.++-..++ ..+..
T Consensus 215 -----------~~-~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL--------~al~~- 273 (1176)
T KOG1248|consen 215 -----------ST-FPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLL--------TALMT- 273 (1176)
T ss_pred -----------cc-CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH--------HHHHH-
Confidence 00 1 2344444443 445677999999999999999998877665433322 22211
Q ss_pred cCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 000254 1406 IDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVR 1485 (1779)
Q Consensus 1406 ~~~~~~~~~~~~~~~~s~~~~~~~Wl~eT~~laL~~lv~lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ 1485 (1779)
..++.. ...-...|+ .-++-| ...+-+..-+..-.-+++++.++..|...+++.+.....+|+..
T Consensus 274 l~ps~~-----------D~~~t~~W~-~v~~~~---~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~ 338 (1176)
T KOG1248|consen 274 LSPSEN-----------DDLLTVAWL-KVLNEA---HDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKE 338 (1176)
T ss_pred hCCCcc-----------chHHHHHHH-HHHHHH---HHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHH
Confidence 111100 123346786 322222 22222223333334678889999998888999999999999988
Q ss_pred HHHhhCCCCCHHHHHHHHHH-HHHHHHhcchhhhccCCcchhhhhhhcccccccCCCCCCCCCChhhhhhhhhHHHHHHH
Q 000254 1486 LMSNAGNLFSDEKWLEVAES-LKEAAKATLPDFSYLGSEDCMAEIAAKGQINVESSGSGLPDDDSENLRTQHLFACIADA 1564 (1779)
Q Consensus 1486 ll~~~g~~f~~~~W~~i~~~-l~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1564 (1779)
++..... ..+. +|.. +..+.. . .|...|
T Consensus 339 il~~sv~-~~~~----~c~~~~~~~l~--~-kf~~~~------------------------------------------- 367 (1176)
T KOG1248|consen 339 ILKESVT-VIDA----LCSKQLHSLLD--Y-KFHAVW------------------------------------------- 367 (1176)
T ss_pred HhcccCc-ccHH----HHHHHHHHHHc--c-hHHHHH-------------------------------------------
Confidence 8876555 1111 1111 110000 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhh-ccCC-----CCCCCCchhh
Q 000254 1565 KCRAAVQLLLIQAVMEIYNMYRPCLSAKNTLVLFEALHDIAYHAHKINSDHPLRSKLQEF-GSMT-----QMQDPPLLRL 1638 (1779)
Q Consensus 1565 ~~kcv~QLlliq~~~el~~~~~~~L~~~~l~~Ll~~L~~s~~fA~~fN~d~~LR~~L~k~-g~~~-----~~~~PnLLkQ 1638 (1779)
+- .+|.+.-+|+.++. ++..++..-|..|.+ .+..-+|-....|...+=-+ +-|. ..-+=|| .-
T Consensus 368 --~~-----ilqi~s~~fek~G~-~s~~~l~~~L~~l~~-lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl-~~ 437 (1176)
T KOG1248|consen 368 --RF-----ILQILSALFEKCGE-LSGPELTKTLEGLCD-LRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL-HA 437 (1176)
T ss_pred --HH-----HHHHHHHHHHHhhh-hcCHHHHHHHHHHHH-hhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc-cc
Confidence 00 13344445555433 444444444443332 23333333333332222111 1010 0000123 11
Q ss_pred HHHhH-HHHHHHHHHHHhCCCCCCcHHhHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccccccCCCchhhhhhhhh
Q 000254 1639 ENESF-QICLTFLQNIILDRPPTYEEADVESHLVNLCQEVLQLYIETSNHGQTSESSASGQVRWLIPLGSGKRRELAARA 1717 (1779)
Q Consensus 1639 E~~s~-~~yl~iL~~l~~d~~~~~~~~~i~~~L~~lc~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~aw~ 1717 (1779)
|+.+. -.+|-=++|=|..+.+. .-..+.++|+.+..-....++...+. +.+...+..
T Consensus 438 ~s~~~~RsWLLPvLR~~i~~A~L---a~F~~~ivpla~sl~~K~~~l~~~~~-------------------~~~~~~tl~ 495 (1176)
T KOG1248|consen 438 ESLSFTRSWLLPVLRDYIIGASL---AFFTEYIVPLAMSLQLKAKKLKEAGS-------------------QVSLYDTLV 495 (1176)
T ss_pred cccccchhHhHHHHHHhhccCcH---HHHHHHHHHHHHHHHHHHHhhhhccC-------------------cHHHHHHHH
Confidence 12211 12333344444444332 35667899999988888776665321 122333333
Q ss_pred hHHHHHHHHHhcCChHHHHhhhhhhHHHHHHHhcccCCChhHHHHHHHHHh
Q 000254 1718 PLIVATLQAICTLEETSFEKNLACFFPLLSSLISCEHGSNEIQVALSDMLD 1768 (1779)
Q Consensus 1718 pvvv~iL~~l~~l~~~~F~~~~~~~ypll~~L~~~~~~~~elr~aL~~~f~ 1768 (1779)
-=+-..|.|+|+.|-|- ..-.+..+|.++.-|... +|+|..+..-++
T Consensus 496 ~QLW~LLP~FC~~P~Dl-~~sF~~la~~l~~al~~~---~elr~~Ic~sL~ 542 (1176)
T KOG1248|consen 496 DQLWSLLPGFCNYPVDL-AESFTDLAPILGAALLKR---PELRETICNSLR 542 (1176)
T ss_pred HHHHHhChhhhCCCccH-HHHHHHHHHHHHHHHhcc---hHhHHHHHHHHH
Confidence 33445699999999764 333567788888888776 489988887774
No 54
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=32.47 E-value=1e+03 Score=31.16 Aligned_cols=225 Identities=16% Similarity=0.205 Sum_probs=116.1
Q ss_pred HHHHHHhhcccccccchhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhc
Q 000254 1111 KIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKS 1190 (1779)
Q Consensus 1111 KLveV~~~Nm~Ri~l~W~~iW~~l~~hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~ 1190 (1779)
-+++++..+-+=....|.. .++...+...-. .+.-+..-|++.|.+|+. .++-..|=.|..+++-+..++...
T Consensus 183 l~v~i~~~S~~~~~~~~~s--gll~~ll~eL~~-dDiLvqlnalell~~La~----~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 183 LLVEIASHSPEAAEAVVNS--GLLDLLLKELDS-DDILVQLNALELLSELAE----TPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHHHHhcCHHHHHHHHhc--cHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc----ChhHHHHHHhCCHHHHHHHHHhcc
Confidence 3666655443322222211 134333333333 677788899999999873 222223333455555555555443
Q ss_pred C-hHHHHHHHHHHH----HHHHHhcccccccCcHHHHHHHHHhhcccchhHHHHHHHHHHHHHhh--ccCcccccccccH
Q 000254 1191 N-AVEIRELIIRCV----SQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRD--YFPYITETETTTF 1263 (1779)
Q Consensus 1191 ~-~~eVre~vL~cl----~qmi~~~~~~IkSGW~~IF~iL~~aa~~~~~~lV~~aF~~l~~I~~d--~l~~l~~~~~~~f 1263 (1779)
. ++..+.+.+-.. .+|-......+..+++.+.+.+.......++.....||+++-.|.+. ....+.....+.+
T Consensus 256 ~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~ 335 (503)
T PF10508_consen 256 EEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAM 335 (503)
T ss_pred ccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHH
Confidence 2 222333333222 22322233345556666666666555667788889999999988752 2122200113566
Q ss_pred HHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhcccCCCCCCCchhhhhccccccCCcchhhh
Q 000254 1264 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLY 1343 (1779)
Q Consensus 1264 ~d~I~cL~~F~~q~~~~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~~~~~ 1343 (1779)
..++..+..+.++.. .++-+.++.-|-.+... + +... . + .+. ...+
T Consensus 336 ~~~l~~~~~~~~~~~-~~lk~r~l~al~~il~~---~-----~~~~--------------~--~------~i~---~~~~ 381 (503)
T PF10508_consen 336 KHVLKAIGDAIKSGS-TELKLRALHALASILTS---G-----TDRQ--------------D--N------DIL---SITE 381 (503)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHhc---C-----CCCc--------------h--H------HHH---HHHH
Confidence 777777777665543 24444444444322110 0 0000 0 0 000 1234
Q ss_pred hHHHHHH------HHhhhcCCCcHHHHHHHHHHHHHHHH
Q 000254 1344 FWFPLLA------GLSELSFDPRPEIRKSALQVLFETLR 1376 (1779)
Q Consensus 1344 lW~pLL~------~L~~l~~d~R~eVR~~AlqtLF~iL~ 1376 (1779)
-||-.+. -+.+++..|=+|+|..|+..|-.+..
T Consensus 382 ~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 382 SWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 4655433 45667778889999999988876554
No 55
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=30.37 E-value=1.4e+03 Score=30.06 Aligned_cols=259 Identities=12% Similarity=0.104 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccc--cCcHHHHH
Q 000254 1146 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK--SGWKSMFM 1223 (1779)
Q Consensus 1146 n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~Ik--SGW~~IF~ 1223 (1779)
+......+++.|+.+... +....+ ...+ .|+....-.++++.||.+++..|..++........ .+ ..++.
T Consensus 51 ~~e~v~~~~~iL~~~l~~-~~~~~l-----~~~~-~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~-~~l~~ 122 (503)
T PF10508_consen 51 NREQVELICDILKRLLSA-LSPDSL-----LPQY-QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD-NELLP 122 (503)
T ss_pred ChHHHHHHHHHHHHHHhc-cCHHHH-----HHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC-ccHHH
Confidence 444445666777655422 222222 1112 23322233357789999999999988866543111 11 11333
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhhcc--CcccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhccc
Q 000254 1224 VFTTAAYDDHKNIVLLAFEIIEKIIRDYF--PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1301 (1779)
Q Consensus 1224 iL~~aa~~~~~~lV~~aF~~l~~I~~d~l--~~l~~~~~~~f~d~I~cL~~F~~q~~~~niSL~AI~~L~~~~~~l~~~~ 1301 (1779)
.+-.+-.+++..+...|-.++..+..... ..+.. .+ .+..|.....+..+ .+-+...+++-.++..
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~--~~----~~~~L~~l~~~~~~-~vR~Rv~el~v~i~~~----- 190 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD--SN----LLSKLKSLMSQSSD-IVRCRVYELLVEIASH----- 190 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC--cc----hHHHHHHHHhccCH-HHHHHHHHHHHHHHhc-----
Confidence 34334456778889999999988875321 11110 11 14455555444222 2334444433222110
Q ss_pred ccccCCCchhhhcccCCCCCCCchhhhhccccccCCcchhhhhHH-HHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccC
Q 000254 1302 LSASSSNKDKEISAKIPPASPRPVKELKLENGEMIDKDDHLYFWF-PLLAGLSELSFDPRPEIRKSALQVLFETLRNHGH 1380 (1779)
Q Consensus 1302 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~~~~~lW~-pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~ 1380 (1779)
+.+.....|- .+|..+-+...+++.=||-.|+++|-++-.+.
T Consensus 191 -----------------------------------S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-- 233 (503)
T PF10508_consen 191 -----------------------------------SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-- 233 (503)
T ss_pred -----------------------------------CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh--
Confidence 0000111111 15555555556688889999999999887622
Q ss_pred CCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000254 1381 LFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKV 1460 (1779)
Q Consensus 1381 ~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~s~~~~~~~Wl~eT~~laL~~lv~lf~~yf~~l~~~l~~~ 1460 (1779)
+-.+.+.+.=+++.+..+....... +....-+ ..-.++..+.++...-..+...++.+
T Consensus 234 ----~g~~yL~~~gi~~~L~~~l~~~~~d---------------p~~~~~~---l~g~~~f~g~la~~~~~~v~~~~p~~ 291 (503)
T PF10508_consen 234 ----HGLQYLEQQGIFDKLSNLLQDSEED---------------PRLSSLL---LPGRMKFFGNLARVSPQEVLELYPAF 291 (503)
T ss_pred ----hHHHHHHhCCHHHHHHHHHhccccC---------------Ccccchh---hhhHHHHHHHHHhcChHHHHHHHHHH
Confidence 2345666665666665554322110 0000000 01111222333322222233455677
Q ss_pred HHHHHHHHhccchhHHHHHHHHH
Q 000254 1461 LMLLVSFIKRPHQSLAGIGIAAF 1483 (1779)
Q Consensus 1461 l~lL~~~i~q~~e~lArig~s~l 1483 (1779)
+..|..++...+.+...++..+|
T Consensus 292 ~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 292 LERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHHHhCCCChhHHHHHHHHH
Confidence 77777777777666555555444
No 56
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=30.30 E-value=1.3e+03 Score=29.85 Aligned_cols=201 Identities=17% Similarity=0.207 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHhhhcccccccCCCchhhhc
Q 000254 1235 NIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLSASSSNKDKEIS 1314 (1779)
Q Consensus 1235 ~lV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~q~~~~niSL~AI~~L~~~~~~l~~~~~~~~~~~~~~~~~ 1314 (1779)
.....-|+.+..+++=.+..+. .+....+|+.+...|+++...+.=..++.+|-.+..+ |.
T Consensus 149 ~~l~~ll~~l~nviKfn~~~l~---e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y---~~------------- 209 (464)
T PF11864_consen 149 SNLSDLLQFLVNVIKFNFNYLD---EDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY---GD------------- 209 (464)
T ss_pred hhHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc---Cc-------------
Confidence 4455667777777766566565 4677888888888877665432223445544333221 11
Q ss_pred ccCCCCCCCchhhhhccccccCCcchhhhhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHh
Q 000254 1315 AKIPPASPRPVKELKLENGEMIDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFSLPLWERVFDSV 1394 (1779)
Q Consensus 1315 ~~i~~~~~~~~~~~~~~~~~~~d~~~~~~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~V 1394 (1779)
+++ .---+++..|..+..-. +..+.|-+++-.++++|-+. ..++
T Consensus 210 --iP~-----------------------~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~-- 253 (464)
T PF11864_consen 210 --IPS-----------------------ESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIR-- 253 (464)
T ss_pred --CCh-----------------------HHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHH--
Confidence 111 00123444555543211 77888888888888766332 2221
Q ss_pred hhhhHHhhhhccCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHH
Q 000254 1395 LFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWLYETCTLALQLVVDLFVKFY--------NTVNPLLRKVLMLLVS 1466 (1779)
Q Consensus 1395 LfPifd~l~~~~~~~~~~~~~~~~~~~s~~~~~~~Wl~eT~~laL~~lv~lf~~yf--------~~l~~~l~~~l~lL~~ 1466 (1779)
-|.+.++.. +. +. .. -...++|-+.++.... ..+..-..-++.-|..
T Consensus 254 --~L~~iL~~~-~~---------------~~-~~------~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~ 308 (464)
T PF11864_consen 254 --TLCDILRSP-DP---------------QN-KR------DINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLN 308 (464)
T ss_pred --HHHHHHccc-Cc---------------cc-cc------cHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHH
Confidence 222223111 00 00 00 1223445444444332 1222112236666667
Q ss_pred HHhccchhHHHHHHHHHHHHH-HhhCCCCCHHHHHHHHHHHHHHHHhcch
Q 000254 1467 FIKRPHQSLAGIGIAAFVRLM-SNAGNLFSDEKWLEVAESLKEAAKATLP 1515 (1779)
Q Consensus 1467 ~i~q~~e~lArig~s~l~~ll-~~~g~~f~~~~W~~i~~~l~~l~~~t~~ 1515 (1779)
-+...+..++---..++.+++ .+.+..+.++.|+.+++.+.+++....+
T Consensus 309 al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~ 358 (464)
T PF11864_consen 309 ALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQP 358 (464)
T ss_pred HHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccc
Confidence 777777777777778888999 8889999999999999988886654443
No 57
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=28.91 E-value=96 Score=24.03 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=22.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000254 1135 SDFFVNIGCSENLSIAIFAMDSLRQLS 1161 (1779)
Q Consensus 1135 ~~hf~~v~~~~n~~va~~AvdsLrqL~ 1161 (1779)
-++|.+..++++..||..|+..|.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 356777788999999999999999876
No 58
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=27.42 E-value=46 Score=37.36 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=31.5
Q ss_pred hHHhHHHHHHHhccCCcchHHHHHHHHHHHhhcCCc
Q 000254 81 SEFILSPLINACGTGFLKIADPALDCIQKMIAYGYL 116 (1779)
Q Consensus 81 ~~~i~~Pl~lac~sk~~ki~~~ALdcl~KLi~~~~~ 116 (1779)
-..+..|++-|..|+++.++..+|.+||+|...+-.
T Consensus 78 lPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 78 LPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 357899999999999999999999999999765443
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=27.30 E-value=1.4e+02 Score=28.45 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=46.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccccCcHHHH
Q 000254 1143 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1222 (1779)
Q Consensus 1143 ~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~IkSGW~~IF 1222 (1779)
.+++..++..|+..|.++. ..+.+.++...+ ...++.||..++..+.++ |.+-.+
T Consensus 10 ~~~~~~vr~~a~~~L~~~~--------------~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i----------~~~~~~ 64 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG--------------DPEAIPALIELL-KDEDPMVRRAAARALGRI----------GDPEAI 64 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT--------------HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC----------HHHHTH
T ss_pred cCCCHHHHHHHHHHHHHcC--------------CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----------CCHHHH
Confidence 5788999999988876321 123455566655 567889999999999865 345555
Q ss_pred HHHHHhhcccchhHHH
Q 000254 1223 MVFTTAAYDDHKNIVL 1238 (1779)
Q Consensus 1223 ~iL~~aa~~~~~~lV~ 1238 (1779)
..|.....++....|+
T Consensus 65 ~~L~~~l~~~~~~~vr 80 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVR 80 (88)
T ss_dssp HHHHHHHTC-SSHHHH
T ss_pred HHHHHHHcCCCcHHHH
Confidence 5565555444444443
No 60
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=26.83 E-value=3.2e+02 Score=29.64 Aligned_cols=80 Identities=11% Similarity=0.232 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhh---hhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccccCcH
Q 000254 1143 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQ---NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWK 1219 (1779)
Q Consensus 1143 ~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ---~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~IkSGW~ 1219 (1779)
.|+|+.+..+|+..|.-++ +.-=..|+.+ ++|+..+..+.....+.+|++.+++.|.+ |.
T Consensus 47 ~~~n~~v~l~AL~LLe~~v-----kNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~------------W~ 109 (144)
T cd03568 47 NHKDPNVQLRALTLLDACA-----ENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQ------------WA 109 (144)
T ss_pred cCCCHHHHHHHHHHHHHHH-----HHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHH------------HH
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHH
Q 000254 1220 SMFMVFTTAAYDDHKNIVLLAFEIIE 1245 (1779)
Q Consensus 1220 ~IF~iL~~aa~~~~~~lV~~aF~~l~ 1245 (1779)
.-|. .+..-..+..+|+.|+
T Consensus 110 ~~f~------~~~~l~~i~~~y~~L~ 129 (144)
T cd03568 110 DEFK------NDPSLSLMSDLYKKLK 129 (144)
T ss_pred HHhC------CCcccHHHHHHHHHHH
No 61
>PLN03205 ATR interacting protein; Provisional
Probab=24.90 E-value=5.3e+02 Score=32.13 Aligned_cols=92 Identities=18% Similarity=0.394 Sum_probs=58.3
Q ss_pred HHHHHHHHhhcccccccchhhhHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHH---hhchhhhhhhhhhhhhhhhHH
Q 000254 1109 LTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVNIGCS-ENLSIAIFAMDSLRQLSMK---FLEREELANYNFQNEFMKPFV 1184 (1779)
Q Consensus 1109 LqKLveV~~~Nm~Ri~l~W~~iW~~l~~hf~~v~~~-~n~~va~~AvdsLrqL~~k---fLe~eEL~~~~FQ~~fL~Pfe 1184 (1779)
|-.+.+=..-|-.|+.-.|..=|-.|-+..++++.. ....|+.-|+....-+.|+ +.++| .|. |..++....
T Consensus 347 Lh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssna~~eRE---kFG-~~~VfESia 422 (652)
T PLN03205 347 LHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTDAYTARE---SFV-SKEVFESIS 422 (652)
T ss_pred HHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccchhHHHH---Hhc-chHHHHHHH
Confidence 555566667788899999999999999988887654 3467888888777766664 45554 233 344444444
Q ss_pred HHHhhcChHHHHHHHHHHHH
Q 000254 1185 IVMRKSNAVEIRELIIRCVS 1204 (1779)
Q Consensus 1185 ~im~~~~~~eVre~vL~cl~ 1204 (1779)
.++++..-.-||...+.-+.
T Consensus 423 QLLkkEaGl~VqKealhLLf 442 (652)
T PLN03205 423 LLLRKEGGLHVRKEAIHLFY 442 (652)
T ss_pred HHHHHhccchhhHHHHHHHH
Confidence 44444433345544444433
No 62
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=23.91 E-value=9.1e+02 Score=27.17 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=78.0
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHHHHHHhcccccc-
Q 000254 1137 FFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK- 1215 (1779)
Q Consensus 1137 hf~~v~~~~n~~va~~AvdsLrqL~~kfLe~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~qmi~~~~~~Ik- 1215 (1779)
++.+.+-+++..+|..|++.+..+...-|- |. ... -|...-+..+++..||....+.+..+-+.+.+-+.
T Consensus 12 ~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-----nP---~~c-vp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 12 NILELCLSSDDSVRLAALQVLELILRQGLV-----NP---KQC-VPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-----Ch---HHH-HhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345567788999999999988865521111 10 111 13333355678899999999999988888766443
Q ss_pred ---cCcHHHHHHHHHhhcccchhH---HHHHHHHHHHHHhhccCcccccccccHHHHHHHHHHHHhCC---CCccccHHH
Q 000254 1216 ---SGWKSMFMVFTTAAYDDHKNI---VLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSR---FNKDISLNA 1286 (1779)
Q Consensus 1216 ---SGW~~IF~iL~~aa~~~~~~l---V~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~q~---~~~niSL~A 1286 (1779)
.|=+..|..-.....+..... ....|..+-.++++. ...-..++..|.+.-... .+.+..-.-
T Consensus 83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~--------r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~ 154 (187)
T PF12830_consen 83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSN--------RKSRRKFLKSLLKQFDFDLTKLSSESSPSD 154 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcc--------cHhHHHHHHHHHHHHHhhccccccccchhH
Confidence 355555554444333322111 333333333333321 112223333333221111 112334556
Q ss_pred HHHHHHHHHhhhc
Q 000254 1287 IAFLRFCATKLAE 1299 (1779)
Q Consensus 1287 I~~L~~~~~~l~~ 1299 (1779)
+.++.++++.++.
T Consensus 155 l~~~~Fla~nLA~ 167 (187)
T PF12830_consen 155 LDFLLFLAENLAT 167 (187)
T ss_pred HHHHHHHHHHHhc
Confidence 7888888888874
No 63
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=23.41 E-value=1.3e+02 Score=26.36 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 000254 1435 CTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVR 1485 (1779)
Q Consensus 1435 ~~laL~~lv~lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ 1485 (1779)
...|+..++.+-....+.+.+++++++..|..++..+++.+...++.+|.+
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 344555666544455566777889999999999988888887777777754
No 64
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=23.33 E-value=3.6e+02 Score=30.34 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=64.8
Q ss_pred hHHhHHHHHHHhccCCcchHHHHHHHHHHHhhcCCccCCCCCCCCchhhHHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 000254 81 SEFILSPLINACGTGFLKIADPALDCIQKMIAYGYLRGEADPTGGPEAKFLSKLIESVCKCHDLGDDAVELLVLKTLLSA 160 (1779)
Q Consensus 81 ~~~i~~Pl~lac~sk~~ki~~~ALdcl~KLi~~~~~~~~~~~~~~~~~~li~~iv~~i~~c~~~td~~vqLqIlk~Lls~ 160 (1779)
...|+..++-.|-+.++++-..|++.|+-.+..|++.+. .++..+|.-.++ .+..|.=+..+.+..+
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~---------~cvp~lIAL~ts----~~~~ir~~A~~~l~~l 72 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK---------QCVPTLIALETS----PNPSIRSRAYQLLKEL 72 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH---------HHHhHhhhhhCC----CChHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999432 234444432222 3444555666666555
Q ss_pred HcccccccchhhHHHHHHHHHhhhc
Q 000254 161 VTSMSLRIHGDCLLQIVRTCYDIYL 185 (1779)
Q Consensus 161 v~s~~~~vhg~~Ll~avrtcynI~l 185 (1779)
-......+++ .+.++||.+|+...
T Consensus 73 ~eK~~s~v~~-~~~~gi~~af~~~~ 96 (187)
T PF12830_consen 73 HEKHESLVES-RYSEGIRLAFDYQR 96 (187)
T ss_pred HHHhHHHHHH-HHHHHHHHHHHHHH
Confidence 5555444554 67789999998664
No 65
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=22.34 E-value=4e+02 Score=28.77 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=37.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhc--hhhhhhhhhhhhhhhhHHHHHhhcChHHHHHHHHHHHH
Q 000254 1143 CSENLSIAIFAMDSLRQLSMKFLE--REELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVS 1204 (1779)
Q Consensus 1143 ~~~n~~va~~AvdsLrqL~~kfLe--~eEL~~~~FQ~~fL~Pfe~im~~~~~~eVre~vL~cl~ 1204 (1779)
.|+|+.+..+|+..|..++.-.-. ..|++. ++|+.-+..+.....+..|++.+++.|.
T Consensus 51 ~~~n~~vql~AL~LLe~~vkNCG~~fh~evas----~~fl~~l~~l~~~~~~~~Vk~kil~li~ 110 (142)
T cd03569 51 LSKNPNVQLYALLLLESCVKNCGTHFHDEVAS----REFMDELKDLIKTTKNEEVRQKILELIQ 110 (142)
T ss_pred cCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh----HHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 357899999998877655421100 122332 4566666666655678899999988776
No 66
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=21.87 E-value=8.7e+02 Score=32.18 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=72.4
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHH---hccCCCChhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCCCCCCC
Q 000254 1345 WFPLLAGLSELSFDPRPEIRKSALQVLFETLR---NHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGD 1421 (1779)
Q Consensus 1345 W~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~---~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~ 1421 (1779)
-.|+|-.+-.-..|.-.+||..|..+.-.++. .||.. .+|-|++..+..
T Consensus 214 iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-----------~llpsll~~l~~----------------- 265 (569)
T KOG1242|consen 214 IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-----------LLLPSLLGSLLE----------------- 265 (569)
T ss_pred HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-----------HhhhhhHHHHHH-----------------
Confidence 34455555555567788999888776655554 44433 256666776632
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 000254 1422 TGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1488 (1779)
Q Consensus 1422 s~~~~~~~Wl~eT~~laL~~lv~lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~ 1488 (1779)
.-| .|...+++++.-+-..==..+...++++.--+.+-++..+..+.+.|..|+.++-.
T Consensus 266 ------~kW--rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 266 ------AKW--RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred ------Hhh--hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 147 66666777666442222234556788888889999999999999999999976654
No 67
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.61 E-value=2.9e+03 Score=30.85 Aligned_cols=146 Identities=17% Similarity=0.265 Sum_probs=87.0
Q ss_pred hhHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhccCCCC------hhhHHHHHHHhhhhhHHhhhhccCCCCCCCCCC
Q 000254 1343 YFWFPLLAGLSELSFDPRPEIRKSALQVLFETLRNHGHLFS------LPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQ 1416 (1779)
Q Consensus 1343 ~lW~pLL~~L~~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~------~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~ 1416 (1779)
++.--+|..|-.-+++..=.||-.++-.|-++|. |..++ ++.|. -+|+..|.++..
T Consensus 1035 ~y~neIl~eLL~~lt~kewRVReasclAL~dLl~--g~~~~~~~e~lpelw~-----~~fRvmDDIKEs----------- 1096 (1702)
T KOG0915|consen 1035 EYLNEILDELLVNLTSKEWRVREASCLALADLLQ--GRPFDQVKEKLPELWE-----AAFRVMDDIKES----------- 1096 (1702)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHH-----HHHHHHHHHHHH-----------
Confidence 4444577777777777666899999999999999 44442 24454 456667777542
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHH-----hccchhHHHHHHHHHHHHHHhh
Q 000254 1417 GVDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNP-LLRKVLMLLVSFI-----KRPHQSLAGIGIAAFVRLMSNA 1490 (1779)
Q Consensus 1417 ~~~~~s~~~~~~~Wl~eT~~laL~~lv~lf~~yf~~l~~-~l~~~l~lL~~~i-----~q~~e~lArig~s~l~~ll~~~ 1490 (1779)
..+....+.+.+++|...--+.-++ -=.++++.++-|. -..-+.+.|.+++-+-.|+.+.
T Consensus 1097 --------------VR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1097 --------------VREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred --------------HHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc
Confidence 2233344555555554444433221 1234444444443 3445677788888888888887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcchhhhccC
Q 000254 1491 GNLFSDEKWLEVAESLKEAAKATLPDFSYLG 1521 (1779)
Q Consensus 1491 g~~f~~~~W~~i~~~l~~l~~~t~~~~~~~~ 1521 (1779)
|..+ ..+--+++-.|-+++...-|....++
T Consensus 1163 g~~l-kP~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1163 GKEL-KPHFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred hhhh-cchhhHHHHHHHHHccccchHHHHHH
Confidence 7766 34555566666666655555544443
No 68
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.02 E-value=3.4e+02 Score=32.97 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=60.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCCCCCH
Q 000254 1426 DQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLFSD 1496 (1779)
Q Consensus 1426 ~~~~Wl~eT~~laL~~lv~lf~~yf~~l~~~l~~~l~lL~~~i~q~~e~lArig~s~l~~ll~~~g~~f~~ 1496 (1779)
+.+.| +-.+-+|..+..|-..|.+.+..+|.++.-.++.-+.....+++|.+|-|+-.+......+.++
T Consensus 98 ~s~dW--~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 98 SSDDW--EDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred chHHH--HHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679 7788899999999988999999999999999999999999999999999998888877776654
No 69
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.89 E-value=9e+02 Score=26.06 Aligned_cols=68 Identities=10% Similarity=0.167 Sum_probs=44.6
Q ss_pred HHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCC---CCCChHHHHHHHHHHHHHh
Q 000254 406 LLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIG--VFFPMIVLRVLENV---AQPNFQQKMIVLRFLEKLC 474 (1779)
Q Consensus 406 Ll~n~~s~~~~vf~lsl~If~~L~~~~r~~LK~Eie--vf~~~i~l~ile~~---~~~~~~qk~~vLe~l~~l~ 474 (1779)
|.|-..+..|.+.-+++.+.=.++.+....+..||. -|++++ .+++..+ ..++..=|..+|+.+...-
T Consensus 43 i~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el-~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 43 LAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL-IKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH-HHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 444445667777778888888888888888888884 688885 4666431 1233344556666666443
Done!