Query 000254
Match_columns 1779
No_of_seqs 400 out of 1144
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 17:21:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000254.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_32-36//hhsearch_pdb/000254hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 1.0 1 1 480.6 20.0 197 604-800 10-208 (211)
2 1r8s_E ARNO; protein transport 1.0 1 1 476.5 20.5 195 607-801 7-201 (203)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 467.0 19.0 197 604-802 15-228 (230)
4 1xsz_A Guanine nucleotide exch 1.0 1 1 446.2 18.5 190 612-801 7-201 (356)
5 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 445.5 21.4 192 610-801 12-203 (347)
6 4fdd_A Transportin-1; heat rep 1.0 1 1 47.2 36.8 71 403-477 217-287 (852)
7 2bpt_A Importin beta-1 subunit 1.0 1 1 45.4 37.2 42 1453-1494 772-818 (861)
8 1ibr_B P95, importin beta-1 su 1.0 1 1 44.4 19.0 290 1146-1494 143-443 (462)
9 1u6g_C TIP120 protein, CAND1; 1.0 1 1 41.3 22.2 111 80-205 45-163 (1230)
10 1b3u_A Protein (protein phosph 1.0 1 1 40.8 21.1 106 1134-1248 204-309 (588)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=480.55 Aligned_cols=197 Identities=52% Similarity=0.909 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 68999999789999999985059424699999819899998999999860689985679743105885359999999861
Q 000254 604 STIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDS 683 (1779)
Q Consensus 604 ~~~e~~k~~K~~l~~~i~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fL~~~~~l~k~~ig~~lg~~~~~~~~vl~~y~~~ 683 (1779)
.+||+.|++|..+++|+.+||+|||+||+||+++|+++++|++||+||+++++|||++||+|||+++++|.+||++|++.
T Consensus 10 ~~~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~~ 89 (211)
T 3ltl_A 10 TQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQ 89 (211)
T ss_dssp -----CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 07899999889999999998329999999999869989999999999984767549999998704662689999999985
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 899998748999997603757983689999999989998561999--989912899999999984036889511589998
Q 000254 684 FDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPK--VFTSADTAYVLAYSVILLNTDSHNPMVKNKMSA 761 (1779)
Q Consensus 684 ~df~~~~~~~alR~fl~~frlpgE~q~idri~e~Fa~~y~~~Np~--~f~~~d~~y~l~ysiimLntdlhn~~~k~kmt~ 761 (1779)
|||+|++||+|||.||.+||||||+|+||||||+||+|||+|||+ .|.++|+||+|+||+||||||+|||++|+|||+
T Consensus 90 fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt~ 169 (211)
T 3ltl_A 90 HDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTK 169 (211)
T ss_dssp SCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCCH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 59889979999999997371798426999999999999998588877747888999999999998564148645689899
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 888872057889999949999999999870734545740
Q 000254 762 DDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDD 800 (1779)
Q Consensus 762 ~~Fi~n~~gi~~~~d~p~~~L~~iY~~I~~~~i~~~~~~ 800 (1779)
++||+|+||+|+|+|+|+++|.+||++|+++||+|+++.
T Consensus 170 ~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 208 (211)
T 3ltl_A 170 EQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETK 208 (211)
T ss_dssp HHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC---
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999998654367899999999999999984876278998
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=476.46 Aligned_cols=195 Identities=54% Similarity=0.907 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99999789999999985059424699999819899998999999860689985679743105885359999999861899
Q 000254 607 EQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDF 686 (1779)
Q Consensus 607 e~~k~~K~~l~~~i~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fL~~~~~l~k~~ig~~lg~~~~~~~~vl~~y~~~~df 686 (1779)
++.+++|+.++.|+.+||.+||+||+||+++|+++++|++||+||+.++||+|++||+|||+++++|.+||++|++.|||
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~fdF 86 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEF 86 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 34888889999999998129999999999879999999999999987768589999999851443799999999996497
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99874899999760375798368999999998999856199998991289999999998403688951158999888887
Q 000254 687 QRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIR 766 (1779)
Q Consensus 687 ~~~~~~~alR~fl~~frlpgE~q~idri~e~Fa~~y~~~Np~~f~~~d~~y~l~ysiimLntdlhn~~~k~kmt~~~Fi~ 766 (1779)
+|++||+|||.||.+||||||+|+|||||++||+|||+|||+.|.++|+||+|+||+||||||+|||++|+|||+++||+
T Consensus 87 ~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~Fi~ 166 (203)
T 1r8s_E 87 TDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVA 166 (203)
T ss_dssp TTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 89968999999997261787168999999999999998497656781167999989988651004742223467999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 20578899999499999999998707345457404
Q 000254 767 NNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDL 801 (1779)
Q Consensus 767 n~~gi~~~~d~p~~~L~~iY~~I~~~~i~~~~~~~ 801 (1779)
|+||+|+|+|+|+++|.+||++|+.+||++++|+.
T Consensus 167 n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~ 201 (203)
T 1r8s_E 167 MNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG 201 (203)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 86266578999999999999999848788965768
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=467.04 Aligned_cols=197 Identities=40% Similarity=0.644 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHCC-CCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 689999997899999999850594246999998198999-989999998606-899856797431058853599999998
Q 000254 604 STIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGN-TPEEIAAFLKNA-SDLNKTLIGDYLGEREELPLKVMHAYV 681 (1779)
Q Consensus 604 ~~~e~~k~~K~~l~~~i~~Fn~~p~~gi~~l~~~~~~~~-~p~~ia~fL~~~-~~l~k~~ig~~lg~~~~~~~~vl~~y~ 681 (1779)
.+++++|++|..+.+|+.+||++||+||+||+++|++++ +|++||+||+.+ ++|||++||+|||+++ |.+||++|+
T Consensus 15 ~~~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~vL~~yv 92 (230)
T 1ku1_A 15 VPRGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSLLNEYI 92 (230)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCC--HHHHHHHHH
T ss_conf 699999999999999999995499999999998898389998999999997276569999999980821--799999998
Q ss_pred HCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC---------------CCCCCHHHHHHHHHHHHHH
Q ss_conf 6189999874899999760375798368999999998999856199---------------9989912899999999984
Q 000254 682 DSFDFQRMEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNP---------------KVFTSADTAYVLAYSVILL 746 (1779)
Q Consensus 682 ~~~df~~~~~~~alR~fl~~frlpgE~q~idri~e~Fa~~y~~~Np---------------~~f~~~d~~y~l~ysiimL 746 (1779)
+.|||+|++||+|||.||.+||||||+|+||||||+||+|||+||| +.|.++|+||+|+||||||
T Consensus 93 ~~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiImL 172 (230)
T 1ku1_A 93 RLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIML 172 (230)
T ss_dssp HTSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 54267999799999999980858851999999999999999981877753210100112234557702899999999998
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 03688951158999888887205788999994999999999987073454574047
Q 000254 747 NTDSHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDLA 802 (1779)
Q Consensus 747 ntdlhn~~~k~kmt~~~Fi~n~~gi~~~~d~p~~~L~~iY~~I~~~~i~~~~~~~~ 802 (1779)
|||+|||++|+|||+++||+|+||+|+|+|||++||.+||++|+.+||+|++|+.+
T Consensus 173 NTDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~g 228 (230)
T 1ku1_A 173 NTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHHG 228 (230)
T ss_dssp HHHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC-----
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 01302643467777999999864656778888999999999998483468866779
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=446.23 Aligned_cols=190 Identities=37% Similarity=0.623 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCCHHHHHHHHHC-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7899999999850594246999998198--99998999999860-68998567974310588535999999986189999
Q 000254 612 YKLELQEGISLFNRKPKKGIEFLINAKK--VGNTPEEIAAFLKN-ASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQR 688 (1779)
Q Consensus 612 ~K~~l~~~i~~Fn~~p~~gi~~l~~~~~--~~~~p~~ia~fL~~-~~~l~k~~ig~~lg~~~~~~~~vl~~y~~~~df~~ 688 (1779)
.|....+|+.+||++||+||+||++.+. ..++|++||+||+. +++|||++||+|||+++++|.+||++|++.|||+|
T Consensus 7 ~~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~g 86 (356)
T 1xsz_A 7 IEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNG 86 (356)
T ss_dssp HHHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999815999999999986001589999999999984587889999999985784578999999999669799
Q ss_pred CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC--CCCCHHHHHH
Q ss_conf 87489999976037579836899999999899985619999899128999999999840368895115--8999888887
Q 000254 689 MEFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVK--NKMSADDFIR 766 (1779)
Q Consensus 689 ~~~~~alR~fl~~frlpgE~q~idri~e~Fa~~y~~~Np~~f~~~d~~y~l~ysiimLntdlhn~~~k--~kmt~~~Fi~ 766 (1779)
++||+|||.||.+||||||+|+||||||+||+|||+|||+.|.++|+||+|+||+||||||+|||++| +|||+++||+
T Consensus 87 ~~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFik 166 (356)
T 1xsz_A 87 QSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKR 166 (356)
T ss_dssp SCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 98999999999828488508899999999999999739986687438999999999862100386555457898999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 20578899999499999999998707345457404
Q 000254 767 NNRGIDDGKDLPEEYLRSLFERISRNEIKMKGDDL 801 (1779)
Q Consensus 767 n~~gi~~~~d~p~~~L~~iY~~I~~~~i~~~~~~~ 801 (1779)
|+||+|+|+|+|+++|.+||++|+.+||+++....
T Consensus 167 N~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~~ 201 (356)
T 1xsz_A 167 NLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKT 201 (356)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCSS
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 85444687889899999999999708775577556
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=445.48 Aligned_cols=192 Identities=50% Similarity=0.880 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99789999999985059424699999819899998999999860689985679743105885359999999861899998
Q 000254 610 RAYKLELQEGISLFNRKPKKGIEFLINAKKVGNTPEEIAAFLKNASDLNKTLIGDYLGEREELPLKVMHAYVDSFDFQRM 689 (1779)
Q Consensus 610 k~~K~~l~~~i~~Fn~~p~~gi~~l~~~~~~~~~p~~ia~fL~~~~~l~k~~ig~~lg~~~~~~~~vl~~y~~~~df~~~ 689 (1779)
+++|..+.+|+.+||.+|++||+||++.|+++++|++||+||+.+++|||++||+|||+++++|.+||++|++.|||+|+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~~~ 91 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADL 91 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 88999999999998239999999999879999999999999985727578999998658970689999999995386899
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 74899999760375798368999999998999856199998991289999999998403688951158999888887205
Q 000254 690 EFDEAIRIFLLGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADTAYVLAYSVILLNTDSHNPMVKNKMSADDFIRNNR 769 (1779)
Q Consensus 690 ~~~~alR~fl~~frlpgE~q~idri~e~Fa~~y~~~Np~~f~~~d~~y~l~ysiimLntdlhn~~~k~kmt~~~Fi~n~~ 769 (1779)
+||+|||.||.+||||||+|+|||||++||+|||+|||+.|.++|++|+|+||+||||||+|||++|+|||+++||+|+|
T Consensus 92 ~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~n~~ 171 (347)
T 2r09_A 92 NLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNR 171 (347)
T ss_dssp CHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 79999999997286897267899999999999998598656785489999999999705640530124587999998751
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 78899999499999999998707345457404
Q 000254 770 GIDDGKDLPEEYLRSLFERISRNEIKMKGDDL 801 (1779)
Q Consensus 770 gi~~~~d~p~~~L~~iY~~I~~~~i~~~~~~~ 801 (1779)
|+|+|.|+|+++|..+|++|..+|+.+++++.
T Consensus 172 ~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 172 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp TTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 12677778999999997743137654554455
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=47.18 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=35.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 999999404671698999999999999999898887999899999999711999998688999999999996181
Q 000254 403 CLSLLKNSASTLMIVFQLSCSIFMSLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLCIDS 477 (1779)
Q Consensus 403 c~~Ll~n~~s~~~~vf~~sl~If~~L~~~~r~~LK~Eievfl~~i~l~iLe~~~~~~~~qk~~~Le~l~~l~~~p 477 (1779)
.+.|.+....+.+.+-...++.+..+...+-..++..++-+++.+ +..+... ...-|..+++++..+|..+
T Consensus 217 l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l-~~~~~~~---~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYM-LQRTQDQ---DENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHH-HHHHTCS---SHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHCCCC---CHHHHHHHHHHHHHHHCCH
T ss_conf 999998717997789999999999999857798998899999999-9870699---6899999999999986036
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=45.37 Aligned_cols=42 Identities=5% Similarity=0.184 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHH-CCCC
Q ss_conf 8798999999999988025----1347799999999999850-8999
Q 000254 1453 VNPLLRKVLMLLVSFIKRP----HQSLAGIGIAAFVRLMSNA-GNLF 1494 (1779)
Q Consensus 1453 l~~ll~~~l~lL~~cI~q~----ne~lAriG~scl~~li~~~-g~~f 1494 (1779)
+.+.+..++..|..+.... ++.+.+.+..++..+.... |+.|
T Consensus 772 ~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~ 818 (861)
T 2bpt_A 772 LFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSI 818 (861)
T ss_dssp HGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999999999874855578699999999999999988288248
No 8
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=44.38 Aligned_cols=290 Identities=13% Similarity=0.144 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHCCCCCCCCC---HHH
Q ss_conf 8888999999999999985105664210025554435999982067-478899999999999970001245581---899
Q 000254 1146 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSN-AVEIRELIIRCVSQMVLSRVNNVKSGW---KSM 1221 (1779)
Q Consensus 1146 n~~va~~AidsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~-~~eIre~iL~cl~qii~~~~~~I~SGW---~~I 1221 (1779)
+..++..|+..|+.++-++-. +.+. .+-..++..|...+.... +.+||...++|+.+++.....+. ..| ..+
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~-~~~~--~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~~l 218 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDP-EQLQ--DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF-DKESERHFI 218 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCG-GGTG--GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH-TSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCC-HHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 789999999999999981871-5347--679999999999867999989999999999999999999843-236789899
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9999984126604689999999999994006865434302099-999999999807888354389999999988861115
Q 000254 1222 FMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFT-DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEG 1300 (1779)
Q Consensus 1222 F~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~-dlV~cL~~F~~~~~~~niSL~AI~~L~~~~~~l~~~ 1300 (1779)
..++.....+.++.+-..+++++..++..+...+. ..+. .++..+....+. .+.++...|++++..++......
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~~~~~l~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~ 293 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME----TYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDL 293 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT----TTTTTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999853799789999999999999999899999----88888999999999828-86099999999999999988878
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCHHHHHCCCCCCCC-CCHHHHHHHHHHHH-HHHHC---CCCCHHHHHHHHHHHHHHH
Q ss_conf 4444677720110026999999840011000366677-32012549999998-86420---7993789999999999999
Q 000254 1301 DLSASSSNKDKEISAKIPPASPRPVKELKLENGEMID-KDDHLYFWFPLLAG-LSELS---FDPRPEIRKSALQVLFETL 1375 (1779)
Q Consensus 1301 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~lW~pLL~~-Ls~l~---~d~R~eVR~~Al~tLF~iL 1375 (1779)
.. ....... ........... -..+..-.+|.+.. |.+.- .+....+|..|...|-.+.
T Consensus 294 ~~----------~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 294 AI----------EASEAAE-------QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp HH----------HHCCTTC-------SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred HH----------HCCCCCC-------CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87----------6010000-------378863035999998766400799999874444444443328899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85169999656999998833205886321158899999998888999861145289-99999999999999999887687
Q 000254 1376 RNHGHLFSLPLWERVFDSVLFPIFDYVRHTIDPSGENSPGQGVDGDTGELDQDAWL-YETCTLALQLVVDLFVKFYNTVN 1454 (1779)
Q Consensus 1376 ~~~G~~f~~~~W~~i~~~VLfPil~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~W~-~eT~~laL~~l~~Lf~~yf~~l~ 1454 (1779)
...|. .++. .++|.+...... ..|. .+....+++.+++-.. -+.+.
T Consensus 357 ~~~~~--------~~~~-~~~~~l~~~l~~----------------------~~~~~r~aal~~l~~l~~~~~--~~~~~ 403 (462)
T 1ibr_B 357 TCCED--------DIVP-HVLPFIKEHIKN----------------------PDWRYRDAAVMAFGCILEGPE--PSQLK 403 (462)
T ss_dssp HHTTT--------THHH-HHHHHHHHHTTC----------------------SSHHHHHHHHHHHHHTSSSSC--TTTTC
T ss_pred HHCCH--------HHHH-HHHHHHHHHHCC----------------------CCHHHHHHHHHHHHHHHCCCC--HHHHH
T ss_conf 86358--------7899-999999998438----------------------975899999999999864876--77789
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9899999999998802513477999999999998508999
Q 000254 1455 PLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGNLF 1494 (1779)
Q Consensus 1455 ~ll~~~l~lL~~cI~q~ne~lAriG~scl~~li~~~g~~f 1494 (1779)
..++.++..+..++..++..+...++.++.++....++.+
T Consensus 404 ~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~ 443 (462)
T 1ibr_B 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 443 (462)
T ss_dssp TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8899999999999669978999999999999998620114
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=41.31 Aligned_cols=111 Identities=9% Similarity=0.142 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 73786999999764699431988998999996229755788999996112799999997500589981689999999999
Q 000254 80 ESEFILSPLINACGTGFLKIADPALDCIQKMIAYGYLRGEADPTGGPEAKFLSKLIESVCKCHDLGDDAVELLVLKTLLS 159 (1779)
Q Consensus 80 ~~~~i~~Pl~lac~tk~~ki~~~ALdclqKLi~~~~~~~~~~~~~~~~~~li~~iv~~i~~c~~~td~~vqLqIlkaLls 159 (1779)
....++.++.-+...+++++-..|+-|+..+... +. . ..+..++..++.+-...++.|.....++|-.
T Consensus 45 ~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~--~~---------~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~ 112 (1230)
T 1u6g_C 45 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSK--VK---------E-YQVETIVDTLCTNMLSDKEQLRDISSIGLKT 112 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTT--SC---------H-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CC---------H-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 7999999999986699989999999999999975--87---------9-8999999999998669838899999999999
Q ss_pred HHCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 87046532--------12346999999877642366576689999999999999
Q 000254 160 AVTSMSLR--------IHGDCLLQIVRTCYDIYLGSKNVINQTTAKASLIQMLV 205 (1779)
Q Consensus 160 ~v~s~~~~--------vhg~~Ll~aVrtcynI~l~Sks~~nq~tA~atLtQmv~ 205 (1779)
++....-. -+-..++..+..+. -.+.+...+..|-.+|.+++.
T Consensus 113 i~~~l~~~~~~~~~~~~~~~~llp~L~~~l---~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 113 VIGELPPASSGSALAANVCKKITGRLTSAI---AKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHCC-----CCTHHHHHHHHHHHHHHHH---SCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHH
T ss_conf 999679744444117889999999999987---578846799999999999999
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=40.84 Aligned_cols=106 Identities=10% Similarity=0.186 Sum_probs=43.7
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999981268888889999999999999851056642100255544359999820674788999999999999700012
Q 000254 1134 LSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNN 1213 (1779)
Q Consensus 1134 L~~hf~~v~~~~n~~va~~AidsLrqL~~kfLe~eEL~~f~fQ~~fL~Pfe~im~~~~~~eIre~iL~cl~qii~~~~~~ 1213 (1779)
+.+.|.....+++..||..|+.+|..++..+ ..+ .+... +.|+..-+....+..+|....+++..+....+..
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~-----~~~~~-~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~ 276 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLL-PQE-----DLEAL-VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE 276 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS-CHH-----HHHHH-THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-CHH-----HHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999998824992889998999999999857-988-----88878-9999999806997789999999999999981952
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 45581899999998412660468999999999999
Q 000254 1214 VKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKII 1248 (1779)
Q Consensus 1214 I~SGW~~IF~iL~~aa~~~~~~iV~~aF~~l~~I~ 1248 (1779)
.. -..++..+.....|+++.+-..+...+..++
T Consensus 277 ~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 277 IT--KTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309 (588)
T ss_dssp HH--HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 10--5589999999858995899999998799999
Done!