BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000255
(1778 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 30/160 (18%)
Query: 1217 DKYVAYRKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEF 1276
+++ A KG G+ + G+ F++E+LGEV EF
Sbjct: 77 ERFRAEEKGWGIRTKEPLKAGQ--FIIEYLGEVVS---------------------EQEF 113
Query: 1277 YNIYLERPKGDADGYDL-----VVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGI 1331
N +E+ +D Y L +V+D+ N A I HSC PNCE + +V+G Y+IG+
Sbjct: 114 RNRMIEQYHNHSDHYCLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGL 173
Query: 1332 YTVRGIHYGEEITFDYNSVTESKEEYEASVCLCGSQVCRG 1371
Y ++ + G E+T+DYN + + E+ + +C CG + CRG
Sbjct: 174 YALKDMPAGTELTYDYNFHSFNVEKQQ--LCKCGFEKCRG 211
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 70/151 (46%), Gaps = 21/151 (13%)
Query: 1225 GLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERP 1284
G G+ C + GE V+E+ G V IRS+Q + + + I
Sbjct: 63 GRGLFCKRNIDAGE--MVIEYAGNV------------IRSIQTDKREKYYDSKGIGCYMF 108
Query: 1285 KGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEIT 1344
+ D D VVDA N A I HSC PNC ++V +DG I I+ +R I+ GEE+T
Sbjct: 109 RID----DSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELT 164
Query: 1345 FDYNSVTESKEEYEASVCLCGSQVCRGSYLN 1375
+DY E C CG++ CR +LN
Sbjct: 165 YDYKFPIEDAS--NKLPCNCGAKKCR-KFLN 192
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 1223 RKGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLE 1282
+KG G+ K+ + FV+E+ GEV K F+ + + KN + Y
Sbjct: 126 KKGWGLRAAKD--LPSNTFVLEYCGEVLD-HKEFKARVKEYARNKN--------IHYYFM 174
Query: 1283 RPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE 1342
K D ++DA K N + + HSC PNCE + V+G ++G +T + + G E
Sbjct: 175 ALKNDE------IIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSE 228
Query: 1343 ITFDYNSVTESKEEYEASVCLCGSQVCRG 1371
+TFDY K EA C CGS CRG
Sbjct: 229 LTFDYQFQRYGK---EAQKCFCGSANCRG 254
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 18/132 (13%)
Query: 1240 DFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLERPKGDADGYDLVVVDAM 1299
+FV E++GE+ ++++ ++ E FY + L++ + ++DA
Sbjct: 116 EFVNEYVGEL------IDEEECRARIRYAQEHDITNFYMLTLDKDR---------IIDAG 160
Query: 1300 HKANYASRICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEEITFDYNSVTESKEEYEA 1359
K NYA + H C+PNCE + +V+G ++G++ + I G E+TF+YN +
Sbjct: 161 PKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGNGK--- 217
Query: 1360 SVCLCGSQVCRG 1371
+VC CG+ C G
Sbjct: 218 TVCKCGAPNCSG 229
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation
3-9 Homolog 2
Length = 300
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 1292 DLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGH----YQIGIYTVRGIHYGEEITFDY 1347
D VDA N + + HSC PN + +D +I +++ R I+ GEE+TFDY
Sbjct: 203 DEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDY 262
Query: 1348 ----------NSVTESKEEYEA-SVCLCGSQVCRGSYLN 1375
+S+ S + +VC CG+ CRG YLN
Sbjct: 263 QMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRG-YLN 300
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY
Length = 166
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 1224 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLER 1283
KG GV+ K+ F DFVVEF G++ E D + +DP+ Y Y +
Sbjct: 40 KGRGVIATKQ--FSRGDFVVEFHGDL------IEITDAKKREALYAQDPSTGCYMYYFQY 91
Query: 1284 PKGDADGYDLVVVDAMHKANYASR-ICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE 1342
VDA + N R I HS NC+ K+ +DG + + R I GEE
Sbjct: 92 LS------KTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEE 145
Query: 1343 ITFDYNSVTESKEE 1356
+ +DY +++ E
Sbjct: 146 LLYDYGDRSKASIE 159
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-y334f / H4-lys20me1 /
Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-y334f / H4-lys20me1 /
Adohcy
Length = 166
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 1224 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLER 1283
KG GV+ K+ F DFVVE+ G++ E D + +DP+ Y Y +
Sbjct: 40 KGRGVIATKQ--FSRGDFVVEYHGDL------IEITDAKKREALYAQDPSTGCYMYYFQY 91
Query: 1284 PKGDADGYDLVVVDAMHKANYASR-ICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE 1342
VDA + N R I HS NC+ K+ +DG + + R I GEE
Sbjct: 92 LS------KTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEE 145
Query: 1343 ITFDYNSVTESKEE 1356
+ FDY +++ E
Sbjct: 146 LLFDYGDRSKASIE 159
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 1224 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLER 1283
KG GV+ K+ F DFVVE+ G++ E D + +DP+ Y Y +
Sbjct: 39 KGRGVIATKQ--FSRGDFVVEYHGDL------IEITDAKKREALYAQDPSTGCYMYYFQY 90
Query: 1284 PKGDADGYDLVVVDAMHKANYASR-ICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE 1342
VDA + N R I HS NC+ K+ +DG + + R I GEE
Sbjct: 91 LS------KTYCVDATRETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEE 144
Query: 1343 ITFDYNSVTESKEE 1356
+ +DY +++ E
Sbjct: 145 LLYDYGDRSKASIE 158
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 1224 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLER 1283
KG GV+ K+ F DFVVE+ G++ E D + +DP+ Y Y +
Sbjct: 41 KGRGVIATKQ--FSRGDFVVEYHGDL------IEITDAKKREALYAQDPSTGCYMYYFQY 92
Query: 1284 PKGDADGYDLVVVDAMHKANYASR-ICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE 1342
VDA + N R I HS NC+ K+ +DG + + R I GEE
Sbjct: 93 LS------KTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEE 146
Query: 1343 ITFDYNSVTESKEE 1356
+ +DY +++ E
Sbjct: 147 LLYDYGDRSKASIE 160
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone
Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human Histone
Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 1224 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLER 1283
KG GV+ K+ F DFVVE+ G++ E D + +DP+ Y Y +
Sbjct: 35 KGRGVIATKQ--FSRGDFVVEYHGDL------IEITDAKKREALYAQDPSTGCYMYYFQY 86
Query: 1284 PKGDADGYDLVVVDAMHKANYASR-ICHSCRPNCEAKVTAVDGHYQIGIYTVRGIHYGEE 1342
VDA + N R I HS NC+ K+ +DG + + R I GEE
Sbjct: 87 LS------KTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEE 140
Query: 1343 ITFDYNSVTESKEE 1356
+ +DY +++ E
Sbjct: 141 LLYDYGDRSKASIE 154
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase
Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase
Clr4
Length = 299
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 43/159 (27%)
Query: 1252 VWKWFEKQDGIRSLQKNNEDPAPEFYNIYL----------ERPKG-DADG----YDL--- 1293
++K EK G+RSL+ PA F YL +R K D DG +DL
Sbjct: 141 IFKTKEKGWGVRSLRFA---PAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMF 197
Query: 1294 -----VVVDAMHKANYASRICHSCRPNCEAKVTAVDGH-----YQIGIYTVRGIHYGEEI 1343
VDA + + + HSC PN A +AV H Y + + ++ I EE+
Sbjct: 198 DDASEYTVDAQNYGDVSRFFNHSCSPNI-AIYSAVRNHGFRTIYDLAFFAIKDIQPLEEL 256
Query: 1344 TFDYN-----SVTESKEEYEASV------CLCGSQVCRG 1371
TFDY S +S++ + + C CGS CRG
Sbjct: 257 TFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRG 295
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 29/167 (17%)
Query: 1224 KGLGVVCNKEGGFGEDDFVVEFLGEVYPVWKWFEKQDGIRSLQKNNEDPAPEFYNIYLER 1283
+G GV C G+ FV +LGE+ ++ R ++ + Y L++
Sbjct: 143 RGWGVKCPVNIKRGQ--FVDRYLGEI------ITSEEADRRRAESTIARRKDVYLFALDK 194
Query: 1284 PKGDADGYDLVV------VDAMHKANYASRICHSCRPNCEAKVTAVDGH-----YQIGIY 1332
D D D ++ VD + + I HSC PN A V H + + ++
Sbjct: 195 -FSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPN-MAIFARVGDHADKHIHDLALF 252
Query: 1333 TVRGIHYGEEITFDY-NSVT-------ESKEEYEASVCLCGSQVCRG 1371
++ I G E+TFDY N +T + + E + CLCG+ CRG
Sbjct: 253 AIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRG 299
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 33.9 bits (76), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1372 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1427
S+ LTGE L+EL+G +D + L+LE C NS+ E +E+G LLG
Sbjct: 453 SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFXLKGLLG 512
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In Complex
With Diclofenac
Length = 553
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1372 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1427
S+ LTGE L+EL+G +D + L+LE C NS+ E +E+G LLG
Sbjct: 446 SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFXLKGLLG 505
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 33.5 bits (75), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 1292 DLVVVDAMHKANYASRICHSCRPN---CEAKVTAVDGHY-QIGIYTVRGIHYGEEITFDY 1347
++ +DA + N + I H C PN + D + +I ++ R I GEE+ FDY
Sbjct: 183 EVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDY 242
Query: 1348 -NSVTESKEEYEASVCLCGSQVCRGS 1372
+ + K +Y C CGS+ C+ S
Sbjct: 243 GDRFWDIKSKY--FTCQCGSEKCKHS 266
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1372 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1427
S+ LTGE L+EL+G +D + L+LE C NS+ E +E+G LLG
Sbjct: 445 SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFXLKGLLG 504
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase, G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase, G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 1292 DLVVVDAMHKANYASRICHSCRPN---CEAKVTAVDGHY-QIGIYTVRGIHYGEEITFDY 1347
++ +DA + N + I H C PN + D + +I ++ R I GEE+ FDY
Sbjct: 185 EVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDY 244
Query: 1348 -NSVTESKEEYEASVCLCGSQVCRGS 1372
+ + K +Y C CGS+ C+ S
Sbjct: 245 GDRFWDIKSKY--FTCQCGSEKCKHS 268
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1372 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1427
S+ LTGE L+EL+G +D + L+LE C NS+ E +E+G LLG
Sbjct: 477 SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 536
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1372 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1427
S+ LTGE L+EL+G +D + L+LE C NS+ E +E+G LLG
Sbjct: 457 SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 516
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1372 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1427
S+ LTGE L+EL+G +D + L+LE C NS+ E +E+G LLG
Sbjct: 477 SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 536
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1372 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1427
S+ LTGE L+EL+G +D + L+LE C NS+ E +E+G LLG
Sbjct: 453 SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 512
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1372 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1427
S+ LTGE L+EL+G +D + L+LE C NS+ E +E+G LLG
Sbjct: 445 SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 504
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1372 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1427
S+ LTGE L+EL+G +D + L+LE C NS+ E +E+G LLG
Sbjct: 446 SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 505
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With Alpha-Methyl-4-Biphenylacetic
Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With Alpha-Methyl-4-Biphenylacetic
Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In Complex
With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1372 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1427
S+ LTGE L+EL+G +D + L+LE C NS+ E +E+G LLG
Sbjct: 446 SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 505
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1372 SYLNLTGEGAFEKVLKELHGLLDRHQ----LMLEACELNSVSEEDYLELGRAGLGSCLLG 1427
S+ LTGE L+EL+G +D + L+LE C NS+ E +E+G LLG
Sbjct: 445 SFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLG 504
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 1287 DADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHY-----QIGIYTVRGIHYGE 1341
+ DG ++ +DA N + I H C PN V H +I ++ R I GE
Sbjct: 198 NKDG-EVYCIDARFYGNVSRFINHHCEPN-LVPVRVFMAHQDLRFPRIAFFSTRLIEAGE 255
Query: 1342 EITFDYNSVTESKEEYEASVCLCGSQVCRGS 1372
++ FDY + S C CGS CR S
Sbjct: 256 QLGFDYGERFWDIKGKLFS-CRCGSPKCRHS 285
>pdb|4B2Q|H Chain H, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|HH Chain h, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 132
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 828 VNTFEFFVPKVAEI-EGRMKKGYYISHGLGSVKDDISRMCRDAIKA 872
V T E +P V E+ EG K ++IS G +V+ D S++C AI+A
Sbjct: 40 VPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPD-SQLCVTAIEA 84
>pdb|2XOK|H Chain H, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 160
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 828 VNTFEFFVPKVAEI-EGRMKKGYYISHGLGSVKDDISRMCRDAIKA 872
V T E +P V E+ EG K ++IS G +V+ D S++C AI+A
Sbjct: 68 VPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPD-SQLCVTAIEA 112
>pdb|3OE7|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Z Chain Z, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
Length = 137
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 828 VNTFEFFVPKVAEI-EGRMKKGYYISHGLGSVKDDISRMCRDAIKA 872
V T E +P V E+ EG K ++IS G +V+ D S++C AI+A
Sbjct: 45 VPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPD-SQLCVTAIEA 89
>pdb|2HLD|H Chain H, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Q Chain Q, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Z Chain Z, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|H Chain H, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Q Chain Q, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Z Chain Z, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|H Chain H, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OEE|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Z Chain Z, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEH|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Z Chain Z, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OFN|H Chain H, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|Q Chain Q, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3ZRY|H Chain H, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|H Chain H, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|R Chain R, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 138
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 828 VNTFEFFVPKVAEI-EGRMKKGYYISHGLGSVKDDISRMCRDAIKA 872
V T E +P V E+ EG K ++IS G +V+ D S++C AI+A
Sbjct: 46 VPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPD-SQLCVTAIEA 90
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And Mono-
Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And Mono-
Methylated H3k9 Peptide
Length = 287
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 1287 DADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHY-----QIGIYTVRGIHYGE 1341
+ DG ++ +DA N + I H C PN V H +I ++ R I GE
Sbjct: 200 NKDG-EVYCIDARFYGNVSRFINHHCEPN-LVPVRVFMAHQDLRFPRIAFFSTRLIEAGE 257
Query: 1342 EITFDYNSVTESKEEYEASVCLCGSQVCRGS 1372
++ FDY + S C CGS CR S
Sbjct: 258 QLGFDYGERFWDIKGKLFS-CRCGSPKCRHS 287
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
01294
Length = 261
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 1287 DADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGHY-----QIGIYTVRGIHYGE 1341
+ DG ++ +DA N + I H C PN V H +I ++ R I GE
Sbjct: 174 NKDG-EVYCIDARFYGNVSRFINHHCEPN-LVPVRVFMAHQDLRFPRIAFFSTRLIEAGE 231
Query: 1342 EITFDYNSVTESKEEYEASVCLCGSQVCRGS 1372
++ FDY + S C CGS CR S
Sbjct: 232 QLGFDYGERFWDIKGKLFS-CRCGSPKCRHS 261
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 1296 VDAMHKANYASRICHSCRPNCEAKVTAVDGHY-QIGIYTVRGIHYGEEITFDYN------ 1348
VD + N + HSC PN +D ++ ++ + I EE+++DY+
Sbjct: 197 VDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNL 256
Query: 1349 SVTESKEEYEAS----VCLCGSQVC 1369
+V+ SKE + C CG++ C
Sbjct: 257 TVSASKERLDHGKLRKPCYCGAKSC 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,855,430
Number of Sequences: 62578
Number of extensions: 2181046
Number of successful extensions: 5239
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 5206
Number of HSP's gapped (non-prelim): 36
length of query: 1778
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1665
effective length of database: 7,902,023
effective search space: 13156868295
effective search space used: 13156868295
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)