BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000256
(1776 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5VU65|P210L_HUMAN Nuclear pore membrane glycoprotein 210-like OS=Homo sapiens
GN=NUP210L PE=2 SV=1
Length = 1888
Score = 187 bits (474), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 345/1531 (22%), Positives = 621/1531 (40%), Gaps = 261/1531 (17%)
Query: 40 ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSIL-LTVAEAMSIEPPSPVFVL 98
E+E D+ +V GI G +V V + E + +A +++ L V E + + P +++L
Sbjct: 206 EMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKKVAAALIRLLVLENIFLIPSHDIYLL 265
Query: 99 VGAALQYKL-KVIRGNIPQVVALPSPH-------HRWSVSNS---SVAQVDNMMGLTQAL 147
VG ++Y++ K+++G + +V P H HR +++ S VA +D+ + A
Sbjct: 266 VGTYIKYQVAKMVQGRVTEV-KFPLEHYILELQDHRVALNGSHSEKVAILDDKTAMVTAS 324
Query: 148 RLGQTAVI-----VEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVA 202
+LGQT ++ V V+G ++ VV P L + P G+
Sbjct: 325 QLGQTNLVFVHKNVHMRSVSGLPN-CTIYVVEPGFLGFTVQP----GN------------ 367
Query: 203 RWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPND-----LVL 257
RW + G Y+I + VF + S ++YI SD++++ T+ P + L
Sbjct: 368 RWSLEVGQVYVITVDVFDKS--STKVYI--SDNLRI---------TYDFPKEYFEEQLTT 414
Query: 258 KHGWRNSRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQT 313
+G + I+KA G+ + ASLT + K ++K QE+ +I F + T
Sbjct: 415 VNG--SYHIVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEV----KIYFPIMLT 468
Query: 314 NGVSESILLPWAP-GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKK-PG 371
+ + P P G+ ++ GG S ++ W SS+ V +T GVV A + G
Sbjct: 469 ---PKFLAFPHHPMGMLYRYKVQVEGG----SGNFTWTSSNETVVIVTTKGVVTAGQVRG 521
Query: 372 KATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLN-----G 426
+TV + + F Y EI I V + M +L F + +G ++ + M +N
Sbjct: 522 NSTVLARDVQNPFRYGEIKIHVLKLNKMELL-PFHADVEIGQIIEIPIAMYHINKETKEA 580
Query: 427 AYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGT---VEHDISLHGPP-CSWAHL 482
F C S +N +DK G ++ I GP CS H+
Sbjct: 581 MAFTDCSHLSLDLN-------------------MDKQGVFTLLKEGIQRPGPMHCSSTHI 621
Query: 483 YASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFN 542
A S G T++ ++++ ++ L++S+ AAY PL
Sbjct: 622 AAKSLGHTLVTVSVNECDKY----------LESSATFAAYEPL----------------- 654
Query: 543 LGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPW--EEDVDFIETFEIFNGKHNHASDG 600
+ ++ + ++ +++ GGP PW E F+E N +
Sbjct: 655 -------KALNPVEVALVTWQSVKEMVFEGGPRPWILEPSRFFLE----LNAEKTEKIGI 703
Query: 601 VHIHVVSGSSKN--LYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASI 658
+ + S +N +Y + C LG L F+ GN G +P PAV + + C+ PAS+
Sbjct: 704 AQVWLPSKRKQNQYIYRIQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASM 763
Query: 659 ALLVDEPVNERKVIQTAAQADRSPGRIR-VTPVTVANGQTIRIAAVGISSSGEAFANSSS 717
++ PV + + AQ P + + PV+ + +A F N SS
Sbjct: 764 SV---TPVYK---VPAGAQPCPLPQHNKWLIPVSRLRDTVLELAV--FDQHRRKFDNFSS 815
Query: 718 LCLGWELSNCDGLAYWDDAY---------GSQKSASSWERFLVLQNESGLCVVRATASGF 768
L L W+ SN + LA+++D GS ++ + L + G ++ G+
Sbjct: 816 LMLEWKSSN-ETLAHFEDYKSVEMVAKDDGSGQTRLHGHQILKVHQIKGTVLIGVNFVGY 874
Query: 769 CDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFL 828
+ K EIS + V L LV + V PE ++ +PD K S+ GS +
Sbjct: 875 SEKKSPK------EISNLPRSVDVELLLVDDVTVVPENATIYNHPDVKETFSLVEGSGYF 928
Query: 829 EAAVNDS-QVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD 887
VN S Q V I E ++L+ P G + VYD+ LA A+A ++V+D+
Sbjct: 929 --LVNSSEQGVVTITYMEAESSVELV--PLHPGFFTLEVYDLCLAFLGPATAHLRVSDIQ 984
Query: 888 WIKIMSGEEISL---------------------MYTYMDIRVHIEDHIVELIDDDATSSP 926
+++ +++ + + M++++ + IV L +
Sbjct: 985 ELELDLIDKVEIDKTVLVTVRVLGSSKRPFQNKYFRNMELKLQLASAIVTLTPMEQQDEY 1044
Query: 927 DGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGA 986
Y + A +G TTL A+ + G + S P +EV+ P R+ P + L+P
Sbjct: 1045 SENYI------LRATTIGQTTLVAIAKDKMGRKYTSTPRHIEVFPPFRLLPEKMTLIPMN 1098
Query: 987 SYMLTLKGGPTVGVYVDYTSTDEEIATIHRS---SGQLFAISPGNTTLIATVFGNGDVVI 1043
+ +GGP V ++ +++ +A ++R +G++ + + T+ G V++
Sbjct: 1099 MMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTAVVHGTIQTVNEDTGKVIV 1158
Query: 1044 -CQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPL--FPEGDVFSFYELC--RNYNWTI 1098
Q ++V +V + A + +L +MP++ + FSF ++W++
Sbjct: 1159 FSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQTPFSFSNANPGLTFHWSM 1218
Query: 1099 EDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTF 1158
+L HSE LQ E F ++ ++AGRT + T
Sbjct: 1219 SKRDVLDLV---PRHSE-VFLQLPV-------------EHNFAMVVHTKAAGRTSIKVTV 1261
Query: 1159 SCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWD 1218
C S E + S + ++ L L P L+P +S+ +
Sbjct: 1262 HCMNSSSGQFEGNLLELSDEVQILVFEKLQL------FYPECQPEQILMPINSQL--KLH 1313
Query: 1219 SQSHKGSIVYSLLKFCSEKNEAASKD-DISIDGDTIKTTSSNHLACIQAKDRSSGRIEIA 1277
+ + V S + C + +D + + +I T+ + I+ + I
Sbjct: 1314 TNREGAAFVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTI--- 1370
Query: 1278 SCVRVAEVAQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPFHEAHNVILYH 1331
+ V+VA V +R+S++ L +G + +Y+++G FH HN LY
Sbjct: 1371 TGVQVAPVTYLRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFH-THNTQLYL 1429
Query: 1332 AETNYHDVVSI-----NYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQL 1386
A N D++ I NYT +A G LV + R P +DY+ V+V +
Sbjct: 1430 A-LNRDDLLHIGPGNKNYTYMA------QAVNRGLTLVGLWDRRHPGMADYIPVAVEHAI 1482
Query: 1387 YPQNPVLHVGGSLDFSVEGFSDQVS-GHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFEC 1445
P + VG + FS S G W +++ + +G A G+ +F +
Sbjct: 1483 EPDTKLTFVGDIICFSTHLVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDI 1542
Query: 1446 PSM---KLQTTVTVLSKNIVSIDAPKEVLTN 1473
P + + V S+ ++S D K LTN
Sbjct: 1543 PGVVKTYREVVVNASSRLMLSYDL-KTYLTN 1572
>sp|Q9D2F7|P210L_MOUSE Nuclear pore membrane glycoprotein 210-like OS=Mus musculus
GN=Nup210l PE=2 SV=2
Length = 1881
Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 341/1544 (22%), Positives = 616/1544 (39%), Gaps = 259/1544 (16%)
Query: 36 DVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSIL-LTVAEAMSIEPPSP 94
D IE+E D+ +V G+ G +V V + E + +A +++ L V E + + P
Sbjct: 198 DYIIEMEKQERQGDVILVSGMRTGAAVVKVRIYEPFYKKVAAALIRLLVLENIFLIPSHD 257
Query: 95 VFVLVGAALQYKL-KVIRGNIPQVVALPSPH-------HRWS---VSNSSVAQVDNMMGL 143
++LVGA ++Y++ K+++G + +V P H HR + + + SVA +D +
Sbjct: 258 TYLLVGAYIKYRVAKMVQGRMTEV-NFPLEHYTLELQDHRLTNGGLPSKSVALLDEKTAM 316
Query: 144 TQALRLGQTAVI-----VEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAI 198
A++LGQT ++ V V+G S++ VV P L I P
Sbjct: 317 VTAVQLGQTNLVFVHKNVHMRSVSGLPN-STIYVVEPGFLGFSIHP-------------- 361
Query: 199 PSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLK 258
RW + G Y+I ++VF + S +YI SD++K++ S+ + L
Sbjct: 362 --GGRWSLEVGQVYVITVEVFDKS--STRVYI--SDNLKITFQFSKEY----FEEQLSTS 411
Query: 259 HGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSE 318
+G + ++KA G+ + A+LT S L + +I +K +
Sbjct: 412 NG--SYHVVKALKDGVVVINATLT--SSLQERNSSQPKTYQISHQQEVKIYFPIQ--LKP 465
Query: 319 SIL-LPWAP-GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKK-PGKATV 375
S L P P GI + GG S ++ W SS+ +T GVV A + G +T+
Sbjct: 466 SFLAFPHHPLGISNRFTVQVEGG----SGNFTWSSSNETVAMVTTKGVVTAGQVRGNSTI 521
Query: 376 KVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAF 435
+ + +I + V + M +L F + +G ++ + M +N
Sbjct: 522 LARDVQNPSRSGDIKVYVMKLNKMELL-PFQADVEIGQIIEVPIAMYHVN-------TET 573
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++ + S + LN+ K+ F ++ ++H CS H+ A+S G T++ +
Sbjct: 574 KEAIAFTDCSHLPLDLNSDKQGVFTLFKEGIQKPGAMH---CSSVHIAATSPGHTLVTVS 630
Query: 496 LSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEAL 555
++ +H +S+ AAY PL + +
Sbjct: 631 VTGHEEH----------AWSSATFAAYEPL------------------------KALNPV 656
Query: 556 DKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKN--- 612
D + ++ +++ GGP PW +E F ++ + + V +K
Sbjct: 657 DVALVTWQSVKEMVFEGGPHPW-----ILEPSRFFLELSMEKAEAIRVAEVRLPAKRKQN 711
Query: 613 --LYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERK 670
+Y V C LG L F+ GN G +P P+V +V + C+ PAS+ +
Sbjct: 712 QYVYRVLCLELGEQVLTFRIGNHPGVLNPSPSVEKVQVRFICAHPASMLV---------- 761
Query: 671 VIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGIS--------SSGEAFANSSSLCLGW 722
++P + P+ N Q I ++++ S G F N SSL L W
Sbjct: 762 -----TPMYKAPSGTQPCPLPQYNKQLIPVSSLRDSVLELAVFDQHGRKFDNFSSLMLEW 816
Query: 723 ELSNCDGLAYWDDAY---------GSQKSASSWERFLVLQNESGLCVVRATASGFCDAKD 773
+ SN + LA+++D+ GS ++ + L + G ++ +G+ K
Sbjct: 817 KSSN-ETLAHFEDSKSVEMVARDDGSGQTRLHGHQILKVHQMKGTVLIGVNFAGYSGKKS 875
Query: 774 GHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVN 833
IS S + V L LV + V PE ++ +PD K ++ GS + +
Sbjct: 876 PKG------ISNSPRSAGVELILVEDVTVQPENATIYNHPDVKEIFNLVEGSGYFLINSS 929
Query: 834 DSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWI---- 889
+ +V I E +QL+ P G + VYD+ LA A A ++V+D+ +
Sbjct: 930 EQDIV-TITYREAESSVQLV--PAHPGFLTLEVYDLCLAYLGPAVAQIRVSDIQELELDL 986
Query: 890 --KIMSGEEISLM---------------YTYMDIRVHIEDHIV--ELIDDDATSSPDGGY 930
K+ G+ + ++ + M++R+ + IV L++D S +
Sbjct: 987 IDKVEIGKTVLVVVRVLGSSKHPFRNKYFRNMEVRLQLASAIVTLRLMEDQDEYSEN--- 1043
Query: 931 FSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYML 990
+ + A +G TTL A + G + S P +EV+ P R+ P + L+ +
Sbjct: 1044 -----YMLRAVTVGQTTLVAIATDRMGKKFTSAPRHIEVFPPFRLIPEKMTLIATNMMQI 1098
Query: 991 TLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG-NGD----VVICQ 1045
+GGP + ++ +++ +A ++R GQ+ S G L T+ N D +V Q
Sbjct: 1099 MSEGGPQPQSIIHFSISNQTVAVVNR-RGQVTGKSVGTAVLHGTIQTVNEDTGKVIVFSQ 1157
Query: 1046 AFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPL--FPEGDVFSFYEL--CRNYNWTIEDE 1101
++V +V + A + +L EMP++ + FSF ++W++
Sbjct: 1158 DEVQIEVVQLQAVRILAAATRLVTATEMPVYVMGVTSTQTPFSFSNASPLLTFHWSMSKR 1217
Query: 1102 KILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCD 1161
+L HSE LQ A E F ++ ++AGRT + T +
Sbjct: 1218 DVLDLV---PRHSE-VFLQLPA-------------ENNFAMVVHTKAAGRTTIKVTVRSE 1260
Query: 1162 FVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTS----LLPSSSESHGQW 1217
S E + S + ++ L L Y + L+P +S+ +
Sbjct: 1261 NSSSGQLEGNLLELSDEIQILVFEKLQL----------FYANCQPEQILMPMNSQL--KL 1308
Query: 1218 DSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIA 1277
+ + V S + C + +D G +++ S A ++ +
Sbjct: 1309 HTNREGAAFVSSRVLKCFPNSSVIEED----GGGLLRSGSIAGTAVLEVTSIEPFGVNQT 1364
Query: 1278 SC--VRVAEVAQIRISNRYP-------LNVIHLAVGAECEIPISYYDALGTPFHEAHNVI 1328
+ V+VA V +R+S+ YP + +G + +Y+ +G FH HN
Sbjct: 1365 TITGVQVAPVTYLRLSS-YPKLYTAQGRTLSAFPLGMSLTFIVEFYNNIGEKFH-THNTR 1422
Query: 1329 LYHAETNYHDVVSI-----NYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVG 1383
LY A N D++ I NYT +A G +V + R P +DY+ V+V
Sbjct: 1423 LYMA-LNRDDLLLIGPGNRNYTYMA------QAVNKGVTVVGLWDQRHPGMADYIPVAVE 1475
Query: 1384 AQLYPQNPVLHVGGSLDFSVEGFSDQVS-GHWFSDNESVVHVHMPSGKAEAVGIGSTKVF 1442
+ P ++ VG + FS + + G W ++V +G A G+ +F
Sbjct: 1476 HAIEPDTKLIFVGDVICFSTQLVNQHGEPGVWMISTNNIVQTDTATGVGVARNPGTATIF 1535
Query: 1443 FECPSMK---LQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTF 1483
P + + V S+ +S D K LTN P T F
Sbjct: 1536 HNIPGVVKTFREVVVNASSRLTLSYDL-KTYLTNTPNATAFKLF 1578
>sp|Q8TEM1|PO210_HUMAN Nuclear pore membrane glycoprotein 210 OS=Homo sapiens GN=NUP210 PE=1
SV=3
Length = 1887
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 349/1501 (23%), Positives = 618/1501 (41%), Gaps = 251/1501 (16%)
Query: 40 ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADS-ILLTVAEAMSIEPPSPVFVL 98
E+E + D +V G+ G + + E + ++ + + L + E + + P V+++
Sbjct: 195 EMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLILENILLNPAYDVYLM 254
Query: 99 VGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNS----------SVAQVDNMMGLTQALR 148
VG ++ YK++ IR +++PS + + NS VA + + AL+
Sbjct: 255 VGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPGPEGDPARPVAVLAQDTSMVTALQ 314
Query: 149 LGQTAVIV--EDTRVAGHTQV--SSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARW 204
LGQ+++++ R+ G +++ S++ VV P L + P GD RW
Sbjct: 315 LGQSSLVLGHRSIRMQGASRLPNSTIYVVEPGYLGFTVHP----GD------------RW 358
Query: 205 FVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDN-QSECWRTFSMPNDLVLKHGWRN 263
+ +G Y I ++VF + S ++Y+ SD+I++ +E + S + +
Sbjct: 359 VLETGRLYEITIEVFDKF--SNKVYV--SDNIRIETVLPAEFFEVLSSSQN----GSYHR 410
Query: 264 SRILKATSQGL-GKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESIL- 321
R LK + LT+ + G+H + ++ V ++ + + + SIL
Sbjct: 411 IRALKRGQTAIDAALTSVVDQDGGVH--------ILQVPVWNQQEVEIHIPITLYPSILT 462
Query: 322 LPWAP--GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKP-GKATVKVV 378
PW P G YQ T S ++ W SS ++T GV+ G + ++
Sbjct: 463 FPWQPKTGAYQ-----YTIRAHGGSGNFSWSSSSHLVATVTVKGVMTTGSDIGFSVIQAH 517
Query: 379 SIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSS 438
+ + ++ E+ + V P SM VE VG L+ + + L S
Sbjct: 518 DVQNPLHFGEMKVYVIEPHSM-EFAPCQVEARVGQALELPLRISGLMPGGASEVVTLSDC 576
Query: 439 VNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPP----CSWAHLYASSSGRTMLHA 494
++ E V N QP +L PP CS + A + G T
Sbjct: 577 SHFDLAVE---VENQGVFQPLPGRL-----------PPGSEHCSGIRVKAEAQGST---- 618
Query: 495 TLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEA 554
TL Y+H G + L A IAAY PL +A D S LG S+
Sbjct: 619 TLLVSYRH------GHVHLSAKITIAAYLPL---KAVDPSSVA--LVTLGSSK------- 660
Query: 555 LDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLY 614
++L GGP PW +E + F +D + + + + S Y
Sbjct: 661 ------------EMLFEGGPRPW-----ILEPSKFFQNVTAEDTDSIGLALFAPHSSRNY 703
Query: 615 G-----VFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNER 669
V CQ LG + GN +P PAV + C+ P+ + L
Sbjct: 704 QQHWILVTCQALGEQVIALSVGNKPSLTNPFPAVEPAVVKFVCAPPSRLTL--------- 754
Query: 670 KVIQTAAQADRSPGRIR----VTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWE-- 723
+ T+ Q D S ++ V PV+ + +AA G F N SSL + WE
Sbjct: 755 APVYTSPQLDMSCPLLQQNKQVVPVSSHRNPRLDLAA--YDQEGRRFDNFSSLSIQWEST 812
Query: 724 ---LSNCD-----GLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGH 775
L++ + L DD G QK + LV SG + ATA+G+ ++ H
Sbjct: 813 RPVLASIEPELPMQLVSQDDESG-QKKLHGLQAILV-HEASGTTAITATATGY---QESH 867
Query: 776 -HSAQLLEISESF--LTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAV 832
SA+ + + L+ ++ L LV +RV+PE ++ +P +A L I GS +
Sbjct: 868 LSSARTKQPHDPLVPLSASIELILVEDVRVSPEEVTIYNHPGIQAELRIREGSGYFFLNT 927
Query: 833 NDSQVVEVI-QAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD--WI 889
+ + VV+V Q G+ M+ P G++ + ++D+ L P A A+V V+D+ +I
Sbjct: 928 STADVVKVAYQEARGVA----MVHPLLPGSSTIMIHDLCLVFPAPAKAVVYVSDIQELYI 983
Query: 890 KIMSGEEI-------------------SLMYTYMDIRVHIEDHIVELID-DDATSSPDGG 929
+++ EI + + +MD+++ I+ L+ D+A +
Sbjct: 984 RVVDKVEIGKTVKAYVRVLDLHKKPFLAKYFPFMDLKLRAASPIITLVALDEALDN---- 1039
Query: 930 YFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYM 989
++++ F I +G T+L S ++G I S P ++EV+ P R+ P + L+ GA+
Sbjct: 1040 -YTIT-FLIRGVAIGQTSLTASVTNKAGQRINSAPQQIEVFPPFRLMPRKVTLLIGATMQ 1097
Query: 990 LTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG----NGDVVIC- 1044
+T +GGP + ++ ++E +A + ++G + ++ GN T+ V G VVI
Sbjct: 1098 VTSEGGPQPQSNILFSISNESVALV-SAAGLVQGLAIGNGTVSGLVQAVDAETGKVVIIS 1156
Query: 1045 QAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIH--PLFPEGDVFSFYELC--RNYNWTIED 1100
Q V+V + +V + A ++ G +MPI+ + + FSF ++W++
Sbjct: 1157 QDLVQVEVLLLRAVRIRAPIMRMRTGTQMPIYVTGITNHQNPFSFGNAVPGLTFHWSVTK 1216
Query: 1101 EKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTF-S 1159
+L L + H + L S + F + GR GRT + +
Sbjct: 1217 RDVLD--LRGRHHEASIRLPS---------------QYNFAMNVLGRVKGRTGLRVVVKA 1259
Query: 1160 CDFVSDS-YSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWD 1218
D S Y +R S I + V L L L P + +L S +
Sbjct: 1260 VDPTSGQLYGLARELSDEIQVQVFEKLQL---------LNPEIEAEQILMSPNSYIKLQT 1310
Query: 1219 SQSHKGSIVYSLLKFCSEKNEAASKDDISI--DGDTIKTTSSNHLACIQAKDRSSGRIEI 1276
++ S+ Y +L EK D+ G I T++ + A++ I
Sbjct: 1311 NRDGAASLSYRVLD-GPEKVPVVHVDEKGFLASGSMIGTSTIE----VIAQEPFGANQTI 1365
Query: 1277 ASCVRVAEVAQIRISNRYPLN------VIHLAVGAECEIPISYYDALGTPFHEAHNVILY 1330
V+V+ V+ +R+S L+ ++ + +G + ++D G FH AH+ +L
Sbjct: 1366 IVAVKVSPVSYLRVSMSPVLHTQNKEALVAVPLGMTVTFTVHFHDNSGDVFH-AHSSVLN 1424
Query: 1331 HAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQ- 1389
A TN D V I + + ++ G L++V P SD++ + V + P+
Sbjct: 1425 FA-TNRDDFVQIGKGPTNNTCV-VRTVSVGLTLLRVWDAEHPGLSDFMPLPVLQAISPEL 1482
Query: 1390 NPVLHVGGSLDF-----SVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFE 1444
+ + VG L S+EG SG W S S++H+ +G A A +GS V++E
Sbjct: 1483 SGAMVVGDVLCLATVLTSLEGL----SGTWSSSANSILHIDPKTGVAVARAVGSVTVYYE 1538
Query: 1445 C 1445
Sbjct: 1539 V 1539
>sp|P11654|PO210_RAT Nuclear pore membrane glycoprotein 210 OS=Rattus norvegicus GN=Pom210
PE=1 SV=1
Length = 1886
Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 327/1487 (21%), Positives = 594/1487 (39%), Gaps = 225/1487 (15%)
Query: 40 ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADS-ILLTVAEAMSIEPPSPVFVL 98
E+E + D +V G+ G + + E + ++ + + L + E + + P V++L
Sbjct: 195 EMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLILENILLNPAYDVYLL 254
Query: 99 VGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNS----------SVAQVDNMMGLTQALR 148
VG ++ YK++ IR +++PS + + NS VA + A++
Sbjct: 255 VGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPDPQGDPARPVAVLTQDTSRVTAMQ 314
Query: 149 LGQTAVIV--EDTRVAGHTQV--SSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARW 204
+GQ+ +++ R+ G +++ S++ VV L + P GD RW
Sbjct: 315 MGQSNLVLGHRSIRMQGASRLPNSTIYVVEAGYLGFTVHP----GD------------RW 358
Query: 205 FVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDN-QSECWRTFSMPNDLVLKHGWRN 263
+ +G Y + ++VF + S ++Y SD+I++ +E + S + H
Sbjct: 359 VLETGHLYAVTIEVFDRS--SNKVY--PSDNIRIEAVFPAEFFEVLSSSQNGSYHH---- 410
Query: 264 SRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSES 319
++A G ++ASLT G+H V ++ V ++ + + + S
Sbjct: 411 ---VRAIQSGQTTISASLTSVVDQDGGVH--------VLQVPVWNQQEVDIHIPITLYPS 459
Query: 320 IL-LPWAP--GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQ-AKKPGKATV 375
IL PW P G YQ + A GG S ++ W SS ++T GV+ G + +
Sbjct: 460 ILTFPWQPKTGAYQYT-IKAHGG----SGNFTWSSSSYMVATVTVKGVMTTGGDTGLSVI 514
Query: 376 KVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAF 435
+ + + ++ E+ + V PSSM VE VG L+ +T+ L
Sbjct: 515 RAHDVQNPLHFGEMKVYVIEPSSM-EFAPCQVEARVGHTLELPLTISGL-------MPGG 566
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
SS V + F ++ + Q L H CS + A + G T T
Sbjct: 567 SSEVVTLSDCSHFDLVVEVENQGVFQPLPGRLPPGPEH---CSGVKVRADAQGST----T 619
Query: 496 LSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEAL 555
L Y H G + L A +AAY PL +A D S LG S+
Sbjct: 620 LLVSYTH------GHVHLGAKITLAAYLPL---KAVDPSSVA--VVTLGSSK-------- 660
Query: 556 DKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYG 615
++L GGP PW +E + F + + + + ++ + Y
Sbjct: 661 -----------EMLFEGGPRPW-----VLEPSKFFRNVTSEDTGSISLSLLGPPASRNYQ 704
Query: 616 -----VFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERK 670
V CQ LG + GN +P PAV + C+ P+ + L+ + +
Sbjct: 705 QHRVLVTCQALGEQVIALSVGNRPSLSNPFPAVEPTVVKSVCAPPSRLTLMPVYALPQLD 764
Query: 671 VIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWE-----LS 725
+ Q ++ +V PV+ + + A G F N SSL + WE L+
Sbjct: 765 LSCPLLQQNK-----QVVPVSSHRNPLLDLGA--YDQQGRRFDNFSSLSIQWESFRPLLA 817
Query: 726 NCD-----GLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQL 780
+ + L DD G QK + V SG + ATA+G+ + +
Sbjct: 818 SIEVDQPMQLVSQDDGNG-QKKLHGLQTVSV-HEASGTTAISATATGYQQSHLSAAGVKQ 875
Query: 781 LEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEV 840
L ++ ++ L LV +RV+PE ++ +P + L I GS + + ++ V
Sbjct: 876 LRDPLVPVSASIELILVEDVRVSPEEVTIYNHPGVQVELHITEGSGYFFLNTSTQDIINV 935
Query: 841 IQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD--WIKIMSGEEI- 897
A + R + M+ P G++ V V+D+ L P A A + V+D+ +++++ EI
Sbjct: 936 --AYQDTRGVA-MVHPLFPGSSTVMVHDLCLTFPAPAKATIHVSDIQELYVRVVDKVEIG 992
Query: 898 ------------------SLMYTYMDIRVHIEDHIVELID-DDATSSPDGGYFSMSSFKI 938
+ +T+MD+++ I+ L+ D+A + ++F +
Sbjct: 993 KAVKAYVRVLDFYKKPFLAKYFTFMDLKLRAASQIITLVTLDEALDN------YTATFLV 1046
Query: 939 MAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTV 998
+G T+L S +SG + S ++EV+ P R+ P + L+ GA +T +GGP
Sbjct: 1047 HGVAIGQTSLSASVTDKSGQRVSSTAQQIEVFPPFRLIPRKVTLIIGAMIQITSEGGPQP 1106
Query: 999 GVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG----NGDVVIC-QAFSSVKVG 1053
+ ++ +E +A + S+G + + GN +++ V G V+I Q V+V
Sbjct: 1107 QSNILFSINNESVAAV-SSAGLVRGLMVGNGSVLGVVQAVDAETGKVIIVSQDHVEVEVL 1165
Query: 1054 VPSSVTLNAQSDQLAVGHEMPIH--PLFPEGDVFSFYELC--RNYNWTIEDEKILGFWLG 1109
+V + A ++ G +MP++ + FSF ++W++ +L
Sbjct: 1166 QLQAVRIRAPITRMRTGTQMPVYVTGITSNQSPFSFGNAVPGLTFHWSVTKRDVL----- 1220
Query: 1110 DQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSC--DFVSDSY 1167
L + ++ S + F+ + ++GR GRT + +
Sbjct: 1221 -DLRGRHHEVSIRLSPQYNFAMN-----------VHGRVKGRTGLRVVVKALDPTAGQLH 1268
Query: 1168 SESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIV 1227
+ S I + V L L L P + +L S + ++ +
Sbjct: 1269 GLGKELSDEIQIQVFEKLRL---------LNPEVEAEQILMSPNSFIKLQTNRDGAAILS 1319
Query: 1228 YSLLKFCSEKNEAASKDD--ISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEV 1285
Y +L EK D+ + G I ++ + A++ + V+V+ +
Sbjct: 1320 YRVLD-GPEKAPIVHIDEKGFLVSGSGIGVSTLE----VIAQEPFGTNQTVLVAVKVSPI 1374
Query: 1286 AQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDV 1339
+ +RIS L+ H L +G + ++D+ G FH AHN L A TN D
Sbjct: 1375 SYLRISMSPVLHTQHKEVLTALPLGMTVTFTVHFHDSSGDIFH-AHNSDLNFA-TNRDDF 1432
Query: 1340 VSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQ-NPVLHVGGS 1398
V I + I ++ G L+ V SD+V + V + P+ + + VG
Sbjct: 1433 VQIGKGATNNTCI-IRTVSVGLTLLHVWDVEHLGLSDFVPLPVLQAITPELSGAVVVGDI 1491
Query: 1399 LDFSVEGFS-DQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFE 1444
L + S VSG W S +V++V +G A A G V++E
Sbjct: 1492 LCLASVLISLGGVSGTWSSSAGNVLYVDPKTGVAIARDAGPVTVYYE 1538
>sp|Q9QY81|PO210_MOUSE Nuclear pore membrane glycoprotein 210 OS=Mus musculus GN=Nup210 PE=1
SV=2
Length = 1886
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 332/1496 (22%), Positives = 589/1496 (39%), Gaps = 243/1496 (16%)
Query: 40 ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADS-ILLTVAEAMSIEPPSPVFVL 98
E+E + D +V G+ G + + E + ++ + + L + E + + P V++L
Sbjct: 195 EMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLILENILLNPAYDVYLL 254
Query: 99 VGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNS----------SVAQVDNMMGLTQALR 148
VG ++ YK++ IR +++PS + + NS VA + A++
Sbjct: 255 VGTSIHYKVQKIRQGKITELSMPSDQYELQLQNSIPDPQGDPARPVAILTQDTSRVTAMQ 314
Query: 149 LGQTAVIV--EDTRVAGHTQV--SSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARW 204
+GQ+ +++ R+ G +++ S++ VV L + P GD RW
Sbjct: 315 MGQSNLVLGHRSIRMQGASRLPNSTIYVVEAGYLGFTVYP----GD------------RW 358
Query: 205 FVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDN-QSECWRTFSMPNDLVLKHGWRN 263
+ +G Y I ++VF + S ++Y SD+I++ +E + S + H
Sbjct: 359 VLETGHLYAITIEVFDRS--SNKVY--PSDNIRIEAVLPAEFFEVLSSSQNGSYHH---- 410
Query: 264 SRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSES 319
++A G ++A+LT G+H V ++ V ++ + + + S
Sbjct: 411 ---IRAIQSGQTAISATLTSVVDQDGGVH--------VLQVPVWNQQEVDIHIPITLYPS 459
Query: 320 IL-LPWAP--GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAK-KPGKATV 375
IL PW P G YQ T S ++ W SS ++T GV+ G + +
Sbjct: 460 ILTFPWQPKTGAYQ-----YTIKAHGGSGNFSWSSSSSMVATVTVKGVMTTSGDTGLSVI 514
Query: 376 KVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAF 435
+ + + ++ E+ + V PSSM VE VG L+ +T+
Sbjct: 515 RAHDVQNPLHFGEMKVYVIEPSSM-EFAPCQVEARVGHTLELPLTISGF-------MPGG 566
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
S V + F ++ + Q L H CS + A + G T L +
Sbjct: 567 GSEVVTLSDCSHFDLVVEVENQGVFQPLPGRLPPGPEH---CSGVKVKADAQGSTTLLVS 623
Query: 496 LSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEAL 555
+ + H D A +AAY PL +A D S LG S+
Sbjct: 624 YTHGHVHLD----------AKITLAAYLPL---KAVDPSSVA--VVTLGSSK-------- 660
Query: 556 DKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYG 615
++L GGP PW +E + F + + + + ++ + Y
Sbjct: 661 -----------EMLFEGGPRPW-----VLEPSKFFRNVTSEDTGSISLSLLGPPASRNYQ 704
Query: 616 -----VFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERK 670
+ CQ LG + GN +P PAV + C+ P+ + L+ + +
Sbjct: 705 QHRVLMTCQALGEQVIALSVGNRPSLSNPFPAVEPTVVKSICAPPSRLTLMPVYALPQLD 764
Query: 671 VIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWE------- 723
+ Q ++ +V PV+ + + A G F N SSL + WE
Sbjct: 765 LSCPLLQQNK-----QVVPVSSHRNPLLDLGA--YDQQGRRFDNFSSLSIQWESSRPLLA 817
Query: 724 ---LSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGF-----CDAKDGH 775
L L DD G QK + V SG + ATA+G+ +A+
Sbjct: 818 SIELDQPMQLVSQDDGNG-QKKLHGLQTVSV-HEASGTTAISATATGYQQSHLSEARVKQ 875
Query: 776 HSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDS 835
L+ +S S + L LV +RV+PE ++ +P + L I GS + +
Sbjct: 876 PHDPLVPVSAS-----IELILVEDVRVSPEEMTIYNHPGVQVELYITEGSGYFFLNTSTQ 930
Query: 836 QVVEVI-QAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD--WIKIM 892
+++V Q G+ + +L G++ V V+D+ LA P A A++ V+D+ +++++
Sbjct: 931 DIIKVAYQDTRGVALVHPLLP----GSSTVMVHDLCLAFPAPAKAIIHVSDIQELYVRVV 986
Query: 893 SGEEI-------------------SLMYTYMDIRVHIEDHIVELID-DDATSSPDGGYFS 932
EI + +T+MD+++ I+ L+ D+A +
Sbjct: 987 DKVEIGKAVKAYVRVLDFYKKPFLAKYFTFMDLKLQAASQIITLVTLDEALDN------Y 1040
Query: 933 MSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTL 992
++F + +G T+L S +SG + S P ++EV+ P R+ P + L+ GA +T
Sbjct: 1041 TATFLVHGVAIGQTSLSASVTDKSGQRVSSTPQQIEVFPPFRLIPRKVTLIIGAMMQITS 1100
Query: 993 KGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG----NGDVVIC-QAF 1047
+GGP + ++ +E +A + SSG + + GN +++ V G V+I Q
Sbjct: 1101 EGGPQPQSNILFSINNESVAAV-SSSGLVRGLMVGNGSVLGVVQAVDAETGKVIIVSQDL 1159
Query: 1048 SSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEG-----DVFSFYELC--RNYNWTIED 1100
V+V +V + A ++ G +MP+ F G FSF ++W++
Sbjct: 1160 VEVEVLQLQAVRIRAPITRMRTGTQMPV---FVTGITSNQSPFSFGNAVPGLTFHWSVTK 1216
Query: 1101 EKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSC 1160
+L L + H + L + F +YGR GRT +
Sbjct: 1217 RDVLD--LRGRHHEVSIRL---------------PPQYNFAMNVYGRVKGRTGLRVVVKA 1259
Query: 1161 --DFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWD 1218
+ + S I + V L L L P + +L S +
Sbjct: 1260 LDPTAGQLHGLGKELSDEIQIQVFEKLRL---------LNPEIEAEQILMSPNSFIKLQT 1310
Query: 1219 SQSHKGSIVYSLLKFCSEKNEAASKDD--ISIDGDTIKTTSSNHLACIQAKDRSSGRIEI 1276
++ + Y +L EK D+ + G I ++ + A++ I
Sbjct: 1311 NRDGAAILSYRVLD-GPEKAPIVHTDEKGFLVSGSGIGVSTLE----VIAQEPFGTNQTI 1365
Query: 1277 ASCVRVAEVAQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPFHEAHNVILY 1330
V+V+ V+ +RIS L+ H L +G + ++D+ G FH AHN +L
Sbjct: 1366 LVAVKVSPVSYLRISMSPVLHTQHKEALTALPLGMTVTFIVHFHDSSGDIFH-AHNSVLN 1424
Query: 1331 HAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQ- 1389
A TN D V I + I ++ G L+ V SD+V + V + P+
Sbjct: 1425 FA-TNRDDFVQIGKGATNNTCI-IRTVSVGLTLLHVWDVEHLGLSDFVPLPVLQAITPEL 1482
Query: 1390 NPVLHVGGSLDF-SVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFE 1444
+ + VG L SV VSG W S V++V +G A A GS V++E
Sbjct: 1483 SGAVVVGDILCLASVLTSLGGVSGTWSSSASHVLYVDPKTGVAIARDAGSVTVYYE 1538
>sp|Q07591|EAE_CITFR Intimin OS=Citrobacter freundii GN=eae PE=3 SV=1
Length = 936
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 315 GVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKAT 374
GV+ S+ W Y +V+L ATGG K Y W SS+ S+ SGV+ + G AT
Sbjct: 764 GVTGSLPKNWLQ--YGQVKLQATGGNGK----YTWKSSNTKIASVDNSGVITLNEKGSAT 817
Query: 375 VKVVS 379
+ VVS
Sbjct: 818 ITVVS 822
>sp|Q7UBC5|DUSA_SHIFL tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3
SV=2
Length = 330
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 333 ELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIE 392
E++ TG DY +S + V++ G A A + + ++ YDEI +
Sbjct: 42 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA-----ALAQCAKLAEARGYDEINLN 96
Query: 393 VSTPSSMVMLRNFPVETVVGSHLQA------------AVTMKTLNG-----AYFYRCDAF 435
V PS V F + + L A VT+KT G +Y + CD F
Sbjct: 97 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD-F 155
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++V+ K E FI+ ++ +L L E + PP + +Y
Sbjct: 156 INTVSGKGECEMFII---HARKAWLSGLSPKE---NREIPPLDYPRVY-----------Q 198
Query: 496 LSKDYQHFDRSFDGPI 511
L +D+ H S +G I
Sbjct: 199 LKRDFPHLTMSINGGI 214
>sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1
Length = 331
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 333 ELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIE 392
E++ TG DY +S + V++ G A A + + ++ YDEI +
Sbjct: 43 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA-----ALAQCAKLAEARGYDEINLN 97
Query: 393 VSTPSSMVMLRNFPVETVVGSHLQA------------AVTMKTLNG-----AYFYRCDAF 435
V PS V F + + L A VT+KT G +Y + CD F
Sbjct: 98 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD-F 156
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++V+ K E FI+ ++ +L L E + PP + +Y
Sbjct: 157 INTVSGKGECEMFII---HARKAWLSGLSPKE---NREIPPLDYPRVY-----------Q 199
Query: 496 LSKDYQHFDRSFDGPI 511
L +D+ H S +G I
Sbjct: 200 LKRDFPHLTMSINGGI 215
>sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12)
GN=dusA PE=3 SV=3
Length = 330
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 333 ELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIE 392
E++ TG DY +S + V++ G A A + + ++ YDEI +
Sbjct: 42 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA-----ALAQCAKLAEARGYDEINLN 96
Query: 393 VSTPSSMVMLRNFPVETVVGSHLQA------------AVTMKTLNG-----AYFYRCDAF 435
V PS V F + + L A VT+KT G +Y + CD F
Sbjct: 97 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD-F 155
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++V+ K E FI+ ++ +L L E + PP + +Y
Sbjct: 156 INTVSGKGECEMFII---HARKAWLSGLSPKE---NREIPPLDYPRVY-----------Q 198
Query: 496 LSKDYQHFDRSFDGPI 511
L +D+ H S +G I
Sbjct: 199 LKRDFPHLTMSINGGI 214
>sp|Q8X5V6|DUSA_ECO57 tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA
PE=3 SV=2
Length = 330
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 333 ELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIE 392
E++ TG DY +S + V++ G A A + + ++ YDEI +
Sbjct: 42 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA-----ALAQCAKLAEARGYDEINLN 96
Query: 393 VSTPSSMVMLRNFPVETVVGSHLQA------------AVTMKTLNG-----AYFYRCDAF 435
V PS V F + + L A VT+KT G +Y + CD F
Sbjct: 97 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD-F 155
Query: 436 SSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHAT 495
++V+ K E FI+ ++ +L L E + PP + +Y
Sbjct: 156 INTVSGKGECEMFII---HARKAWLSGLSPKE---NREIPPLDYPRVY-----------Q 198
Query: 496 LSKDYQHFDRSFDGPI 511
L +D+ H S +G I
Sbjct: 199 LKRDFPHLTMSINGGI 214
>sp|P51650|SSDH_RAT Succinate-semialdehyde dehydrogenase, mitochondrial OS=Rattus
norvegicus GN=Aldh5a1 PE=1 SV=2
Length = 523
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 860 GTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMYTYMDIRVHIEDHIVELID 919
G L TV D G+ RAA A W +I E SL+ + D+ + +D + ++I
Sbjct: 72 GAKLGTVADCGVPEARAAVRAAYDAFSSWKEISVKERSSLLRKWYDLMIQNKDELAKIIT 131
Query: 920 -------DDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRV 967
+A F + F A+ + +Y SA+ + G +L QP+ V
Sbjct: 132 AESGKPLKEAQGEILYSAFFLEWFSEEARRVYGDIIYTSAKDKRGL-VLKQPVGV 185
>sp|B0K3X8|PRMA_THEPX Ribosomal protein L11 methyltransferase OS=Thermoanaerobacter sp.
(strain X514) GN=prmA PE=3 SV=1
Length = 308
Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 213 LIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQ 272
++++K F G+ ++ ++E D+ +N + ++ + +V+K W + SQ
Sbjct: 84 IVELKSFGIDIGNFDVKVSEVDEADWENNWKQYYKPLKIGKKIVIKPSWE-----EYVSQ 138
Query: 273 G---LGKLTASLTYFSGLHD-TKEVLKVVQEIMVCDRIKFSLDQTNGV 316
G + +L + + +G H+ TK L+ +++I++ + I F + +G+
Sbjct: 139 GEEIIIELDPGMAFGTGTHETTKMCLEFLEDIVMPESIVFDVGCGSGI 186
>sp|B0KA79|PRMA_THEP3 Ribosomal protein L11 methyltransferase OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=prmA PE=3
SV=1
Length = 308
Score = 34.3 bits (77), Expect = 9.6, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 213 LIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQ 272
++++K F G+ ++ ++E D+ +N + ++ + +V+K W + SQ
Sbjct: 84 IVELKSFGIDIGNFDVKVSEVDEADWENNWKQYYKPLKIGKKIVIKPSWE-----EYVSQ 138
Query: 273 G---LGKLTASLTYFSGLHD-TKEVLKVVQEIMVCDRIKFSLDQTNGV 316
G + +L + + +G H+ TK L+ +++I++ + I F + +G+
Sbjct: 139 GEEIIIELDPGMAFGTGTHETTKMCLEFLEDIVMPESIVFDVGCGSGI 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 652,471,996
Number of Sequences: 539616
Number of extensions: 27731506
Number of successful extensions: 66769
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 66563
Number of HSP's gapped (non-prelim): 258
length of query: 1776
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1644
effective length of database: 120,340,147
effective search space: 197839201668
effective search space used: 197839201668
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)