Query 000256
Match_columns 1776
No_of_seqs 207 out of 249
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 01:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1833 Nuclear pore complex, 100.0 2.9E-35 6.3E-40 350.9 32.8 655 559-1396 2-678 (679)
2 KOG1833 Nuclear pore complex, 99.9 2.3E-27 5E-32 283.8 15.7 454 958-1452 3-484 (679)
3 smart00635 BID_2 Bacterial Ig- 97.8 0.00011 2.3E-09 71.3 8.9 71 970-1041 2-77 (81)
4 PF02368 Big_2: Bacterial Ig-l 97.6 8.2E-05 1.8E-09 71.6 4.7 65 972-1037 4-71 (79)
5 PF02368 Big_2: Bacterial Ig-l 97.4 0.00021 4.5E-09 68.8 5.7 71 1385-1456 6-79 (79)
6 smart00635 BID_2 Bacterial Ig- 97.1 0.0025 5.4E-08 61.8 9.5 63 1385-1448 6-74 (81)
7 TIGR00864 PCC polycystin catio 96.7 8 0.00017 57.9 109.9 613 716-1457 1457-2125(2740)
8 COG5492 Bacterial surface prot 91.7 1.3 2.8E-05 54.3 12.1 76 1384-1459 184-264 (329)
9 TIGR00864 PCC polycystin catio 91.4 1.2E+02 0.0027 46.4 104.5 429 935-1447 1475-1935(2740)
10 COG5492 Bacterial surface prot 87.2 19 0.00041 44.4 17.2 140 971-1160 182-323 (329)
11 PF13629 T2SS-T3SS_pil_N: Pilu 79.8 12 0.00026 35.7 8.9 51 110-160 7-60 (72)
12 PF13629 T2SS-T3SS_pil_N: Pilu 76.4 6.8 0.00015 37.4 6.2 63 1299-1377 5-67 (72)
13 PRK02654 putative inner membra 57.9 20 0.00044 43.7 6.3 63 1385-1448 165-241 (375)
14 PF06832 BiPBP_C: Penicillin-B 57.1 29 0.00062 34.3 6.4 63 803-871 16-82 (89)
15 smart00634 BID_1 Bacterial Ig- 47.3 83 0.0018 31.3 8.0 68 695-768 17-85 (92)
16 PF06832 BiPBP_C: Penicillin-B 34.8 1.7E+02 0.0037 28.9 7.9 52 328-383 30-83 (89)
17 KOG3513 Neural cell adhesion m 30.5 1.5E+03 0.033 32.4 17.9 143 954-1109 407-564 (1051)
18 PF13908 Shisa: Wnt and FGF in 26.5 1E+02 0.0022 34.6 5.3 16 1735-1750 145-160 (179)
19 PF07347 CI-B14_5a: NADH:ubiqu 25.5 44 0.00096 33.9 1.9 12 1761-1772 49-60 (97)
20 PF00630 Filamin: Filamin/ABP2 24.2 4.9E+02 0.011 25.7 9.3 71 1297-1369 13-91 (101)
21 PF02369 Big_1: Bacterial Ig-l 21.1 3.6E+02 0.0078 27.4 7.5 70 690-767 17-90 (100)
22 PF10717 ODV-E18: Occlusion-de 20.5 1.5E+02 0.0032 29.4 4.2 21 1680-1700 26-46 (85)
23 KOG1446 Histone H3 (Lys4) meth 20.2 1.1E+03 0.024 28.9 12.2 59 117-176 128-186 (311)
No 1
>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-35 Score=350.90 Aligned_cols=655 Identities=21% Similarity=0.225 Sum_probs=448.7
Q ss_pred EEecCceEEEEEecCCccCcccc-ceEEEEE-EecCCCCcccCceeeeeeecCcceEEEEeeccccEEEEEEEEcccCCC
Q 000256 559 YLVPRTHVDVLLVGGPEPWEEDV-DFIETFE-IFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGD 636 (1776)
Q Consensus 559 ~L~~GSs~~~~~~GGP~pW~~e~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~C~~lGe~~l~l~vgN~~~~ 636 (1776)
++..||+.++...|||++|..|. .+++... ..++.+ ..+. ....|+..|+.+|..+. +.||....
T Consensus 2 ~~~~~st~~~~~~~~p~r~~~e~~~~ik~~t~~~~~~~--------~~~~---~~v~~~is~q~v~~~~~--~~~nl~~i 68 (679)
T KOG1833|consen 2 GRKYGSTPRHIEVGGPFRWLPEKMTLIKTMTQVMSEGG--------PQPQ---SIVHFSISNQTVAVVNR--RGGNLGKI 68 (679)
T ss_pred cccccCccceEEcCCCcccccchhHHHHHHHHHhhccC--------Cccc---eEEEEeecchhhhhhhh--hccccccc
Confidence 45689999999999999997763 4443210 112211 1111 23489999999999877 99999999
Q ss_pred CCCCCeeeEEEEEEEEecCCeEEEEEccCcchhhhhcccccCCCCCCceeEEEEEecCCCeEEEEEEEEcCCCCeEeecC
Q 000256 637 DHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSS 716 (1776)
Q Consensus 637 ~np~Pa~~~~~v~v~C~~P~~L~l~v~~P~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~r~~~l~v~vfD~~Grkf~N~S 716 (1776)
.+|.|++.++++.++|..|..+.+...+|.+++..++......| +.+.|+....+.-..--+.+..|.|++
T Consensus 69 ~~~~~~h~~i~~~~~~~~~~~v~~~~~~q~~~l~~vr~~~~a~r---------~~van~~~~~va~v~~s~~~~~fSns~ 139 (679)
T KOG1833|consen 69 VGPAPVHGEIQTSNECTGPVIVFSQDEVQIEQLRAVRILAAATR---------LIVANGMPVYVAGVTSTQTPFSFSNSN 139 (679)
T ss_pred cccceeehheeeeecccCceEEEEeccchhhHHHHHHHHhhccc---------eEEecCceEEEEEeecccCcceecCCC
Confidence 99999999999999999999999998887776666665444444 244777766666544444444444443
Q ss_pred CceEEEEecCCCcceEeecccccccCCCcceeEEEEeeccceEEEEEEEeeEeeccCCccccccccccccceeeEEEEEE
Q 000256 717 SLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQL 796 (1776)
Q Consensus 717 SL~l~W~~s~~~~l~~~~~~~~~~~~~s~~~~~~~l~~~~G~~~I~At~~gy~~~~~~~~~~~~~~~~~~~i~~~iel~l 796 (1776)
-+. +-||+.+ +....+|+++..+++..|.+..+ .+.+.. .+.
T Consensus 140 ~~~----------~~~w~~~---~~t~~~~e~~~~~~~~~~~~~~~-~v~~~~---~g~--------------------- 181 (679)
T KOG1833|consen 140 PLL----------TFHWSMS---DVTDLVPEHSEVFLQLPGEHNFA-VVHTKA---AGR--------------------- 181 (679)
T ss_pred chh----------eeecchh---hhhccccccchHHHhcccceeeE-EEeeec---ccc---------------------
Confidence 322 2366554 23346788888888888988877 555531 111
Q ss_pred eeceEEeCceeEEeeCCCceEEEEEcceeeEEEEEEcCcceEEEEeccCcceeeEEEEeeCcceEEEEEEEeccCCCCCc
Q 000256 797 VSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRA 876 (1776)
Q Consensus 797 v~~i~l~P~~~~l~n~p~~~~~l~i~gGSG~f~~sssn~~Va~v~~~~~g~~~~~i~v~P~~~G~~~V~V~Dlcl~~~~~ 876 (1776)
+..+..+..+| .....+...|||+.++....+++.+.+... +.|.+-+++|++.|+++|+|.|.|+++ .+
T Consensus 182 ----~s~~~tl~~~~--vs~~~~~~t~gs~~~e~~~l~t~~s~v~~p---l~q~~~vl~Pkn~Gq~kl~v~d~g~~~-~s 251 (679)
T KOG1833|consen 182 ----TSIKVTLHCMN--VSSGQFEGTGGSLSDEVQILMTTGSDVGFP---LIQAHDVLNPKNNGQVKLRVSDAGLVG-QS 251 (679)
T ss_pred ----ceeEEEEEEee--cccCccccccceeEEEEEeeecccccccch---hhcHHHhcCCCCCceEEEEEecccccc-cc
Confidence 01111222222 222338999999999999888887766433 355667899999999999999999999 89
Q ss_pred ceEEEEEeeeEEEEEeeccEEEEE-EEeeeeEEEeecc-eEEEEe-------CCCC-CCCCCCccceeeEEEEEeEEEEE
Q 000256 877 ASALVQVADVDWIKIMSGEEISLM-YTYMDIRVHIEDH-IVELID-------DDAT-SSPDGGYFSMSSFKIMAKHLGIT 946 (1776)
Q Consensus 877 a~a~V~V~di~~I~l~~~~eI~v~-~~~mdl~l~i~~~-iv~l~~-------~~~~-~~p~~~~~~~~~~~v~g~~~G~t 946 (1776)
+.|.++|.|+++|+++...-++.| --..++....+++ .|+..+ .+.. ..+..+++...+|.++|.++|++
T Consensus 252 a~al~rvad~~~l~id~eglv~~G~s~~vtll~~~~~g~~Feveq~~l~d~qvd~~~lhV~s~~~sg~~~tl~A~~lGtt 331 (679)
T KOG1833|consen 252 ADALVRVADIHSLAIDAEGLVEIGASVEVTLLAQDETGASFEVEQRPLADAQVDASNLHVISTKVSGLRYTLRANSLGTT 331 (679)
T ss_pred cchheeccCccEeeecccccccCCceEEEEEEeecccCCccccccccccccccccccCcccccccccceeEEEeeccccE
Confidence 999999999999999876444444 1122233333333 222221 1111 22233556678999999999999
Q ss_pred EEEEEEEccCceEEEEeeEEEEEeCCCeeccCeEEEecCceEEEEEeeCCccceEEEEeecCceEEEEEcccceEEEEee
Q 000256 947 TLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISP 1026 (1776)
Q Consensus 947 tLtas~~~~~G~~i~S~~~~I~Vf~PL~l~P~~ltLv~Gs~~ql~~~GGP~p~~~v~fss~n~~VasV~~~~G~Vt~~~~ 1026 (1776)
++++++++.+|+...|.++++|+|.|+++.|+.++|+||+++++.++|||+|...+.|+-.|..+|.++. ++.++..+.
T Consensus 332 tl~vs~~~S~G~vls~~Th~vqlysp~~l~p~~l~l~PGsk~~l~~eGGp~p~~~ld~~~~~n~~A~ie~-s~~l~~~ap 410 (679)
T KOG1833|consen 332 TLSVSSKSSSGRVLSSRTHTVQLYSPIFLQPKRLTLIPGSKFQLEVEGGPQPTPPLDFSLNNNMIASIEP-SILLTSSAP 410 (679)
T ss_pred EEEEEEecccceEeeccceeEEEeccccCCcceEEEecCCceEEEEccCCCCCCcccceecccceeeccc-ccceEeecc
Confidence 9999999888999888999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred eeeEEEEEEecccceEEEEEeEEEEEEceeeEEEEeccceeecCcEEeEEEeec-----CCceeeecceee--EEEEEEC
Q 000256 1027 GNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFP-----EGDVFSFYELCR--NYNWTIE 1099 (1776)
Q Consensus 1027 G~t~It~~v~~~~~~~v~e~~~~V~V~~l~~i~I~a~~~rl~~G~~~pv~~~g~-----~g~pfsf~n~~l--~f~Ws~s 1099 (1776)
|+++++++..-.+|. ++++.+-+.+..+-++.+.+....+.+|....++.++. +..+|.|..... .-+|.-+
T Consensus 411 g~ttiy~~~ivG~ga-v~~qti~lsv~glPgi~l~aas~~v~tgdrvtl~~v~~spg~ede~~f~fi~~vvpv~~~~~e~ 489 (679)
T KOG1833|consen 411 GYTTIYGTVIVGDGA-VTEQTIVLSVAGLPGIILSAASRKVETGDRVTLRLVGVSPGAEDEEPFAFIKAVVPVKSHRNEV 489 (679)
T ss_pred CCcceeeEEEEecCe-eEEEEEEeeecCcCceeeecccceeecCceEEEEEEeecCCccccchhhhccceeEEeeccCcC
Confidence 999999954433555 45667888888888898999999999999888887763 134555444432 2223300
Q ss_pred CcceeEEEecccccccccccccccccceEecccccccccceEEEEEEccceEEEEEEEEEEecCCCCcc--cceeeeeeE
Q 000256 1100 DEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYS--ESRIYSASI 1177 (1776)
Q Consensus 1100 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~e~~f~v~v~~~~~G~t~I~vtv~~~~~~~~~~--~~~~lsa~i 1177 (1776)
+. |+ .++ ..++ ....|+++-
T Consensus 490 --------p~-------------------Ln----------------lsa---------------r~~~t~rl~tF~t~t 511 (679)
T KOG1833|consen 490 --------PL-------------------LN----------------LSA---------------RKHFTGRLSTFTTET 511 (679)
T ss_pred --------cc-------------------cC----------------hhh---------------hcccccccCcceecc
Confidence 00 00 000 0000 022334444
Q ss_pred EEEEEecccccccCCceeecCCCCccceeccCCcccccccccCCceeEEEEEeecccCCCCccccccceecCCCeEEecC
Q 000256 1178 SLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTS 1257 (1776)
Q Consensus 1178 ~I~Vve~L~L~~~~p~~~~l~P~~~~~~llP~s~~~l~~t~~~~gs~~i~y~il~~~~~~~~v~~~d~~~I~~g~i~t~~ 1257 (1776)
.+++...+.+ +.|+..- -++ + + | .| +++..++..
T Consensus 512 ~~~~e~gl~v---------~~~~~di-------n~~--------~-----v-----~--------~d----N~~l~ktt~ 545 (679)
T KOG1833|consen 512 TITVEDGLSV---------VQPEMDI-------NTV--------R-----V-----A--------PD----NSQLKKTTA 545 (679)
T ss_pred eeEEeccceE---------EecccCC-------ccc--------e-----e-----c--------CC----CccceeEee
Confidence 4444444444 2332210 000 0 0 1 11 222223333
Q ss_pred cceeEEEEEEeccCcceeEEEEEEEceeeEEEEEcc-CCcceeeeecCcEEEEEEEEeccCCCccccccceEEEEEEEce
Q 000256 1258 SNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNR-YPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNY 1336 (1776)
Q Consensus 1258 ~~G~a~i~v~d~~~g~qt~~~~V~Vs~V~~l~i~~~-~~~~~~~lpvG~s~~~~V~~~D~~G~~F~~~~~~~~l~~~~n~ 1336 (1776)
..--+++.-.|...+ +.++++++.+.+.|..++ .+.+....++ +......++-.+-+|.+.+....++.+.++
T Consensus 546 ~lqA~l~~~~d~tS~---ia~~~~~s~v~q~r~ks~~ip~h~~dsai---le~~~~~v~~l~vt~l~vhg~ta~~~~~en 619 (679)
T KOG1833|consen 546 WLQASLSVESDFTSR---IAISADGSLVTQGREKSAAIPVHNVDSAI---LETVLIPVTVLRVTSLDVHGTTALKSAFEN 619 (679)
T ss_pred cccceEEEeeccccc---eEeecchhhhhccccCCCCCcccccchhh---heeecceeeeeeeEeecccchhhhhhhhcC
Confidence 333355555555433 778888888888887655 2344444444 444555666777777777766667788889
Q ss_pred eeeEEEEeecCCCcEEEEEEceeeeEEEEEEeccCCCceeEEEEeeeeEEecCCCeEEec
Q 000256 1337 HDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVG 1396 (1776)
Q Consensus 1337 ~dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~~~~i~dyv~v~V~~~I~P~~~~L~vG 1396 (1776)
.+++.+..+.... .-+++..+.|.++.+++...+.+-.+|+.+++.....|+..+.+.|
T Consensus 620 s~~~FLnt~~~~p-v~yv~~~arG~al~~~sns~n~rph~~vl~p~la~~~~Q~~~i~~~ 678 (679)
T KOG1833|consen 620 SPLIFLNTGAADP-VKYVPQEARGVALVSLSNSTNHRPHLLVLIPYLACCVVQHWLISIR 678 (679)
T ss_pred CceEEeecccccc-eEEeeccccCceeeeeccCCCCCCcceEEeChhhcccccceEEecc
Confidence 9999999885333 5578888999999999977777777999999999999998877665
No 2
>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-27 Score=283.83 Aligned_cols=454 Identities=16% Similarity=0.153 Sum_probs=373.9
Q ss_pred eEEEEeeEEEEEeCCCeeccCeEEEecCceEEEEEeeCCccceEEEEeecCceEEEEEcccceEEEEeeeeeEEEEEEec
Q 000256 958 HEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG 1037 (1776)
Q Consensus 958 ~~i~S~~~~I~Vf~PL~l~P~~ltLv~Gs~~ql~~~GGP~p~~~v~fss~n~~VasV~~~~G~Vt~~~~G~t~It~~v~~ 1037 (1776)
++..|.+.-++++.|+|..|+..+|++- ++|..-+|||+++..+.|++++++++++.+ .|..++...|...+.+.++-
T Consensus 3 ~~~~st~~~~~~~~p~r~~~e~~~~ik~-~t~~~~~~~~~~~~~v~~~is~q~v~~~~~-~~~nl~~i~~~~~~h~~i~~ 80 (679)
T KOG1833|consen 3 RKYGSTPRHIEVGGPFRWLPEKMTLIKT-MTQVMSEGGPQPQSIVHFSISNQTVAVVNR-RGGNLGKIVGPAPVHGEIQT 80 (679)
T ss_pred ccccCccceEEcCCCcccccchhHHHHH-HHHHhhccCCccceEEEEeecchhhhhhhh-hccccccccccceeehheee
Confidence 3445666778999999999999999977 888889999999999999999999999998 88888889999999888885
Q ss_pred ---ccceEEEEEeEEEEEEceeeEEEEeccceeecCcEEeEEEeecC--Cceeeeccee--eEEEEEECCcceeEEEecc
Q 000256 1038 ---NGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPE--GDVFSFYELC--RNYNWTIEDEKILGFWLGD 1110 (1776)
Q Consensus 1038 ---~~~~~v~e~~~~V~V~~l~~i~I~a~~~rl~~G~~~pv~~~g~~--g~pfsf~n~~--l~f~Ws~s~~~vl~~~~~~ 1110 (1776)
..++++++.++++.+..|..||+-+..+|+.+-.-||+|++|++ +.+|+|.|.. +.|+|..+ ++.+..+.
T Consensus 81 ~~~~~~~~~v~~~~~~q~~~l~~vr~~~~a~r~~van~~~~~va~v~~s~~~~~fSns~~~~~~~w~~~--~~t~~~~e- 157 (679)
T KOG1833|consen 81 SNECTGPVIVFSQDEVQIEQLRAVRILAAATRLIVANGMPVYVAGVTSTQTPFSFSNSNPLLTFHWSMS--DVTDLVPE- 157 (679)
T ss_pred eecccCceEEEEeccchhhHHHHHHHHhhccceEEecCceEEEEEeecccCcceecCCCchheeecchh--hhhccccc-
Confidence 36888888888888889999999999999999999999999875 7899999998 59999988 66666555
Q ss_pred cccccccccccccccceEecccccccccceEEEEEEccceEEEEEEEEEEecCCCCccc--ceeeeeeEEEEEEeccccc
Q 000256 1111 QLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSE--SRIYSASISLSVVSDLPLA 1188 (1776)
Q Consensus 1111 ~~~~~~~~~~~~~~~~~~l~g~~~~~e~~f~v~v~~~~~G~t~I~vtv~~~~~~~~~~~--~~~lsa~i~I~Vve~L~L~ 1188 (1776)
|.+.. .+++| +.+|+ .++++++|++++.+++.|.+.+.++++ ...+++++++...++..+
T Consensus 158 --~~~~~---------~~~~~-----~~~~~-~v~~~~~g~~s~~~tl~~~~vs~~~~~~t~gs~~~e~~~l~t~~s~v- 219 (679)
T KOG1833|consen 158 --HSEVF---------LQLPG-----EHNFA-VVHTKAAGRTSIKVTLHCMNVSSGQFEGTGGSLSDEVQILMTTGSDV- 219 (679)
T ss_pred --cchHH---------Hhccc-----ceeeE-EEeeeccccceeEEEEEEeecccCccccccceeEEEEEeeecccccc-
Confidence 33443 34553 55898 999999999999999999888888886 668899999999999988
Q ss_pred ccCCceeecCCCCccceec-cCC--cccccccccCCceeEEEEEeecccCCCCccccccceecCCCeEEec-CcceeEEE
Q 000256 1189 LGIPVTWVLPPHYTSTSLL-PSS--SESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTT-SSNHLACI 1264 (1776)
Q Consensus 1189 ~~~p~~~~l~P~~~~~~ll-P~s--~~~l~~t~~~~gs~~i~y~il~~~~~~~~v~~~d~~~I~~g~i~t~-~~~G~a~i 1264 (1776)
..|...++.++ |.. +.++ .+ ++.|+...+.+.+- |-.+...+..| .+|.+..| +..+++..
T Consensus 220 --------~~pl~q~~~vl~Pkn~Gq~kl-~v-~d~g~~~~sa~al~-rvad~~~l~id----~eglv~~G~s~~vtll~ 284 (679)
T KOG1833|consen 220 --------GFPLIQAHDVLNPKNNGQVKL-RV-SDAGLVGQSADALV-RVADIHSLAID----AEGLVEIGASVEVTLLA 284 (679)
T ss_pred --------cchhhcHHHhcCCCCCceEEE-EE-ecccccccccchhe-eccCccEeeec----ccccccCCceEEEEEEe
Confidence 56666666777 665 7885 77 57776655555444 33333333334 67777666 55666666
Q ss_pred EEEeccC-c-ceeEEEEEEEceeeEEEEEccC----CcceeeeecCcEEEEEEEEeccCCCccccccceEEEEEEEce-e
Q 000256 1265 QAKDRSS-G-RIEIASCVRVAEVAQIRISNRY----PLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNY-H 1337 (1776)
Q Consensus 1265 ~v~d~~~-g-~qt~~~~V~Vs~V~~l~i~~~~----~~~~~~lpvG~s~~~~V~~~D~~G~~F~~~~~~~~l~~~~n~-~ 1337 (1776)
++++... + .|.-.+.++| |..++++.+++ .+.+.+.++| +.+|.+.++.+.|+.|+.-.-...|....++ +
T Consensus 285 ~~~~g~~Feveq~~l~d~qv-d~~~lhV~s~~~sg~~~tl~A~~lG-tttl~vs~~~S~G~vls~~Th~vqlysp~~l~p 362 (679)
T KOG1833|consen 285 QDETGASFEVEQRPLADAQV-DASNLHVISTKVSGLRYTLRANSLG-TTTLSVSSKSSSGRVLSSRTHTVQLYSPIFLQP 362 (679)
T ss_pred ecccCCcccccccccccccc-ccccCcccccccccceeEEEeeccc-cEEEEEEEecccceEeeccceeEEEeccccCCc
Confidence 7777666 4 6666677777 88888887775 5588999999 9999999999999999943333457788888 9
Q ss_pred eeEEEEeecCCCcEEEEEEceeeeEEEEEEeccCCCceeEEEEeeeeEEecCCC--eEEec-cEEEEEEeecC-CCceee
Q 000256 1338 DVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNP--VLHVG-GSLDFSVEGFS-DQVSGH 1413 (1776)
Q Consensus 1338 dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~~~~i~dyv~v~V~~~I~P~~~--~L~vG-d~i~fs~~~~~-~~~~g~ 1413 (1776)
+++.+.+++ .++.++..|.+.+.++-.-|+.++..+.++.++-+.+++.|... +..+| +.+|+++.+.. .+.+|.
T Consensus 363 ~~l~l~PGs-k~~l~~eGGp~p~~~ld~~~~~n~~A~ie~s~~l~~~apg~ttiy~~~ivG~gav~~qti~lsv~glPgi 441 (679)
T KOG1833|consen 363 KRLTLIPGS-KFQLEVEGGPQPTPPLDFSLNNNMIASIEPSILLTSSAPGYTTIYGTVIVGDGAVTEQTIVLSVAGLPGI 441 (679)
T ss_pred ceEEEecCC-ceEEEEccCCCCCCcccceecccceeecccccceEeeccCCcceeeEEEEecCeeEEEEEEeeecCcCce
Confidence 999999997 68889999999999999999999999999999999999999965 46999 99999987765 577889
Q ss_pred EEeeCCceEEE-eCccceEEEEeee--eEEEEEEeCCc-eEEE
Q 000256 1414 WFSDNESVVHV-HMPSGKAEAVGIG--STKVFFECPSM-KLQT 1452 (1776)
Q Consensus 1414 WssSn~sVl~V-D~~tG~a~A~~~G--~atV~~~~~~~-~t~t 1452 (1776)
|.++..+.+++ |..|+..+++++| ...++..++++ +++.
T Consensus 442 ~l~aas~~v~tgdrvtl~~v~~spg~ede~~f~fi~~vvpv~~ 484 (679)
T KOG1833|consen 442 ILSAASRKVETGDRVTLRLVGVSPGAEDEEPFAFIKAVVPVKS 484 (679)
T ss_pred eeecccceeecCceEEEEEEeecCCccccchhhhccceeEEee
Confidence 99999999999 9999999999999 88888888885 7766
No 3
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=97.77 E-value=0.00011 Score=71.34 Aligned_cols=71 Identities=24% Similarity=0.304 Sum_probs=60.1
Q ss_pred eCCCeeccCeEEEecCceEEEEEeeCC--cc-ceEEEEeecCceEEE-EEcccce-EEEEeeeeeEEEEEEecccce
Q 000256 970 YAPPRIHPHDIFLVPGASYMLTLKGGP--TV-GVYVDYTSTDEEIAT-IHRSSGQ-LFAISPGNTTLIATVFGNGDV 1041 (1776)
Q Consensus 970 f~PL~l~P~~ltLv~Gs~~ql~~~GGP--~p-~~~v~fss~n~~Vas-V~~~~G~-Vt~~~~G~t~It~~v~~~~~~ 1041 (1776)
+..++|.|.++.|..|.+.||.+.=-| .+ ...+.|+++|++||+ |+. .|+ |+|++.|+++|++++.+....
T Consensus 2 ~~~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~~~~v~w~Ssn~~vatvv~~-~G~~vta~~~G~a~Ita~~~~~~~~ 77 (81)
T smart00635 2 VTSVTVTPTTASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNPSVATVVNA-SGLVVTAVAAGTATITATSGDGSSA 77 (81)
T ss_pred ccEEEEeCCeeEEeCCCeEEEEEEEECCCCCccceEEEEECCCcEEEEECC-CCCEEEEEeceEEEEEEEECCCcce
Confidence 356789999999999999999987222 12 678999999999999 687 999 999999999999999986543
No 4
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=97.56 E-value=8.2e-05 Score=71.60 Aligned_cols=65 Identities=29% Similarity=0.410 Sum_probs=59.3
Q ss_pred CCeeccCeEEEecCceEEEEEeeCCccc--eEEEEeecCceEEEEE-cccceEEEEeeeeeEEEEEEec
Q 000256 972 PPRIHPHDIFLVPGASYMLTLKGGPTVG--VYVDYTSTDEEIATIH-RSSGQLFAISPGNTTLIATVFG 1037 (1776)
Q Consensus 972 PL~l~P~~ltLv~Gs~~ql~~~GGP~p~--~~v~fss~n~~VasV~-~~~G~Vt~~~~G~t~It~~v~~ 1037 (1776)
.+.+.|..+.|..|.+.||...+-|... ..+.|+++|++||+|+ . .|.|+|++.|+++|++++.+
T Consensus 4 ~I~i~~~~~~l~~G~~~~l~~~~~~~~~~~~~v~w~ssn~~iatV~~~-~G~Vta~~~G~a~Itat~~~ 71 (79)
T PF02368_consen 4 SITITPTSVTLKVGQTQQLTATVTPSDGSNSKVTWSSSNPSIATVDGN-TGKVTALKAGTATITATSGD 71 (79)
T ss_dssp SEEETTTEEECETTCEETTEEEEEEEESTTSCEEEEESSTTTEEEETT-TEEEEESSSCEEEEEEEETT
T ss_pred EEEEECCEEEEECCCEEEEEEEEEECCCcEeEEEEEeCCCeEEEEECC-CEEEEEEECeEEEEEEEECC
Confidence 4578999999999999999999877654 5799999999999999 7 99999999999999999998
No 5
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=97.44 E-value=0.00021 Score=68.83 Aligned_cols=71 Identities=25% Similarity=0.351 Sum_probs=59.1
Q ss_pred EEecCCCeEEeccEEEEEEeecC-C--CceeeEEeeCCceEEEeCccceEEEEeeeeEEEEEEeCCceEEEEEEE
Q 000256 1385 QLYPQNPVLHVGGSLDFSVEGFS-D--QVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTV 1456 (1776)
Q Consensus 1385 ~I~P~~~~L~vGd~i~fs~~~~~-~--~~~g~WssSn~sVl~VD~~tG~a~A~~~G~atV~~~~~~~~t~t~V~V 1456 (1776)
.|.|....|.+|+..+|...+.+ + .....|+|+|++|+.||..+|.++|+++|+++|.....+ ....+++|
T Consensus 6 ~i~~~~~~l~~G~~~~l~~~~~~~~~~~~~v~w~ssn~~iatV~~~~G~Vta~~~G~a~Itat~~~-~~~~~~tV 79 (79)
T PF02368_consen 6 TITPTSVTLKVGQTQQLTATVTPSDGSNSKVTWSSSNPSIATVDGNTGKVTALKAGTATITATSGD-NKSATVTV 79 (79)
T ss_dssp EETTTEEECETTCEETTEEEEEEEESTTSCEEEEESSTTTEEEETTTEEEEESSSCEEEEEEEETT-SEEEEEEE
T ss_pred EEECCEEEEECCCEEEEEEEEEECCCcEeEEEEEeCCCeEEEEECCCEEEEEEECeEEEEEEEECC-CceEEEEC
Confidence 57888899999999999987665 2 256799999999999994499999999999999998877 55555554
No 6
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=97.13 E-value=0.0025 Score=61.80 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=53.0
Q ss_pred EEecCCCeEEeccEEEEEEeecC---C-CceeeEEeeCCceEE-EeCccce-EEEEeeeeEEEEEEeCCc
Q 000256 1385 QLYPQNPVLHVGGSLDFSVEGFS---D-QVSGHWFSDNESVVH-VHMPSGK-AEAVGIGSTKVFFECPSM 1448 (1776)
Q Consensus 1385 ~I~P~~~~L~vGd~i~fs~~~~~---~-~~~g~WssSn~sVl~-VD~~tG~-a~A~~~G~atV~~~~~~~ 1448 (1776)
.|.|....|.+|+..+|.....+ . .....|+|+|++|++ ||. .|. +.|+++|+++|+....+.
T Consensus 6 ~i~p~~~~l~~G~~~~l~a~~~~~~~~~~~~v~w~Ssn~~vatvv~~-~G~~vta~~~G~a~Ita~~~~~ 74 (81)
T smart00635 6 TVTPTTASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNPSVATVVNA-SGLVVTAVAAGTATITATSGDG 74 (81)
T ss_pred EEeCCeeEEeCCCeEEEEEEEECCCCCccceEEEEECCCcEEEEECC-CCCEEEEEeceEEEEEEEECCC
Confidence 58999999999999999986443 1 234599999999999 577 999 999999999998876654
No 7
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.73 E-value=8 Score=57.90 Aligned_cols=613 Identities=14% Similarity=0.115 Sum_probs=305.4
Q ss_pred CCceEEEEecCCCcceEeecccccccCCCcceeEEEEeeccceEEEEEEEeeEeeccCCccccccccccccceeeEEEEE
Q 000256 716 SSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQ 795 (1776)
Q Consensus 716 SSL~l~W~~s~~~~l~~~~~~~~~~~~~s~~~~~~~l~~~~G~~~I~At~~gy~~~~~~~~~~~~~~~~~~~i~~~iel~ 795 (1776)
+.+...|.|-+.. .. +++.-.|.. ...|+-+|+-++..-. +.. +.++.+.
T Consensus 1457 t~~Sy~WdFGDGs----ts---------t~qnptHtY-~~~GtYtVtLTvtN~~---Gss-------------t~T~~Vt 1506 (2740)
T TIGR00864 1457 RNASYLWDFGDGG----LL---------EGPEILHAF-NSPGDFNIRLAAANEV---GKN-------------EATLNVA 1506 (2740)
T ss_pred CceEEEEECCCCC----cc---------CccceEEEc-CCCceEEEEEEEECCC---Cce-------------EEEEEEE
Confidence 3568889997621 11 111123433 5788888887766421 110 1122222
Q ss_pred E---eeceEEeCceeEEeeCCCceEEEEEcceee-EEEEEEcCcceEEEEeccCcceeeEEEEeeCcceEEEEEEEeccC
Q 000256 796 L---VSTLRVNPEYNLLFFNPDAKANLSIAGGSC-FLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGL 871 (1776)
Q Consensus 796 l---v~~i~l~P~~~~l~n~p~~~~~l~i~gGSG-~f~~sssn~~Va~v~~~~~g~~~~~i~v~P~~~G~~~V~V~Dlcl 871 (1776)
+ +..+.+.++.-.++....+..+-...+|+. .|.|...|...... ++ ....-+=..+|..+|.+.=-.-
T Consensus 1507 V~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGDg~ts~~----~n---pt~~yTY~spGtYtVtLTvtN~ 1579 (2740)
T TIGR00864 1507 VKARVRGLTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCDHCTPIF----GG---NTIFYTFRSVGTFNIIVTAEND 1579 (2740)
T ss_pred EeccccceEEcCCCccccccceEEEEEEccCCCceeEEEEeCCCCcccc----CC---CceEEeecCCceEEEEEEEecC
Confidence 2 334556565544444333333333467887 89998876432211 11 0111122357888887776555
Q ss_pred CCCCcceEEEEEeeeEEE-EEeec---------cEEEEEE----EeeeeEEEeecc---eEEEEeCCCCCCCCC-C-ccc
Q 000256 872 APPRAASALVQVADVDWI-KIMSG---------EEISLMY----TYMDIRVHIEDH---IVELIDDDATSSPDG-G-YFS 932 (1776)
Q Consensus 872 ~~~~~a~a~V~V~di~~I-~l~~~---------~eI~v~~----~~mdl~l~i~~~---iv~l~~~~~~~~p~~-~-~~~ 932 (1776)
.+.......|.|.+.-.. .|... +++...| +.+.|...++++ ..+..-.+. +.+++ . ..-
T Consensus 1580 ~Gs~~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~~~~-n~~dg~~~~~t 1658 (2740)
T TIGR00864 1580 VGAAQASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNAILD-NEPDGPAFAGS 1658 (2740)
T ss_pred CCccceeEEEEEeecccceEEEeecccccCCcccccccceeccCCEEEeeeccCCCCeeEEEEEEecC-CCCCCcccccc
Confidence 554445555666543211 12111 1111111 334455555555 233322110 11111 0 112
Q ss_pred eeeEEEEEeEEEEEEEEEEEEccCceEEEEeeEEEEEeCCCe---eccCeEEEecCce--EEEEEeeCCccceEEEEeec
Q 000256 933 MSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPR---IHPHDIFLVPGAS--YMLTLKGGPTVGVYVDYTST 1007 (1776)
Q Consensus 933 ~~~~~v~g~~~G~ttLtas~~~~~G~~i~S~~~~I~Vf~PL~---l~P~~ltLv~Gs~--~ql~~~GGP~p~~~v~fss~ 1007 (1776)
+..+.++-.+.|..++++++.+.-|+. ++..+|.|-.|+. |...+--.-+|+. +.....+|. +....|+..
T Consensus 1659 Gk~~~vt~~~pG~Y~VtL~aSN~vG~~--t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS--~vty~W~~g 1734 (2740)
T TIGR00864 1659 GKGAKLNPLEAGPCDIFLQAANLLGQA--TADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGS--GLQYRWFLE 1734 (2740)
T ss_pred CceeEEecCCCceEEEEEEEeecccce--eeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCC--CcEEEEEEC
Confidence 456788889999999999999877877 4555566666664 3322222345775 444447785 566777776
Q ss_pred CceEEEEEcccce-EEEEeeeeeEEEEEEecccceEEEEEeEEEEEE-ceeeEEEEeccc----eeecCcEEeEEEeecC
Q 000256 1008 DEEIATIHRSSGQ-LFAISPGNTTLIATVFGNGDVVICQAFSSVKVG-VPSSVTLNAQSD----QLAVGHEMPIHPLFPE 1081 (1776)
Q Consensus 1008 n~~VasV~~~~G~-Vt~~~~G~t~It~~v~~~~~~~v~e~~~~V~V~-~l~~i~I~a~~~----rl~~G~~~pv~~~g~~ 1081 (1776)
+..--.... ... -+=-..|.-.|+.++.+..|... .+..|.|. +..|+.|++... -+.+|...++....-+
T Consensus 1735 dG~s~~~s~-p~~tHtf~~~G~y~VtVta~N~vss~~--~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vst 1811 (2740)
T TIGR00864 1735 EGDDLETSE-PFMSHSFPSAGLHLVTMKAFNELGSAN--ASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELAT 1811 (2740)
T ss_pred CCCCcccCC-CceEEEccCCceEEEEEEEEccccccc--eeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccC
Confidence 653222111 111 23345899999999998765532 34566665 557777765443 2445555555443233
Q ss_pred CceeeecceeeEEEEEECCcceeEEEecccccccccccccccccceEecccccccccceEEEEEEccceEEEEEEEEEEe
Q 000256 1082 GDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCD 1161 (1776)
Q Consensus 1082 g~pfsf~n~~l~f~Ws~s~~~vl~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~e~~f~v~v~~~~~G~t~I~vtv~~~ 1161 (1776)
|++ ..+.|...+..-. . ...+......+|.-+|++++.=.
T Consensus 1812 Gsn-------Vsw~W~f~~g~s~----~-----------------------------gk~v~~Tf~~aG~ytV~L~AsN~ 1851 (2740)
T TIGR00864 1812 GTN-------VSWCWAIDGGSSK----M-----------------------------GKHACMTFPDAGTFAIRLNASNA 1851 (2740)
T ss_pred CCe-------eEEEEEeCCCCcc----c-----------------------------cceeEEecCCCeEEEEEEEEEcc
Confidence 444 4689988643211 0 11134555789999999998621
Q ss_pred cCCCCcccceeeeeeEEEEEEeccc-ccccCCceeecCCCCccceeccCCcccccccccCCceeEEEEEeecccCCCCcc
Q 000256 1162 FVSDSYSESRIYSASISLSVVSDLP-LALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEA 1240 (1776)
Q Consensus 1162 ~~~~~~~~~~~lsa~i~I~Vve~L~-L~~~~p~~~~l~P~~~~~~llP~s~~~l~~t~~~~gs~~i~y~il~~~~~~~~v 1240 (1776)
. . . .+++-++.|-+++. | .|..... .+.||-+..| +.....|+ .++|..-= .+...+
T Consensus 1852 -v-s--~----~~~s~~~~VQe~I~~L--------~L~as~~--~~~~n~~v~f-sa~l~~GS-~Vtf~w~f--Gdgs~~ 1909 (2740)
T TIGR00864 1852 -V-S--G----KSASREFFAEEPIFGL--------ELKASKK--IAAIGEKVEF-QILLAAGS-AVNFRLQI--GGAAPE 1909 (2740)
T ss_pred -c-C--c----ceeeeeEEEEEecceE--------EEecccc--cccCCCEEEE-EEEecCCC-ceEEEEEe--CCCCce
Confidence 1 1 1 13445566666652 2 1122211 2225555544 32223443 34453311 011111
Q ss_pred ccccceecCCCeE-EecCcceeEEEEEEeccC-cceeEEEEEE-EceeeEEEEEccCCcceeeeecCcEEEEEEEEeccC
Q 000256 1241 ASKDDISIDGDTI-KTTSSNHLACIQAKDRSS-GRIEIASCVR-VAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDAL 1317 (1776)
Q Consensus 1241 ~~~d~~~I~~g~i-~t~~~~G~a~i~v~d~~~-g~qt~~~~V~-Vs~V~~l~i~~~~~~~~~~lpvG~s~~~~V~~~D~~ 1317 (1776)
.. + ++..+ -+....|.-.|.|+.... +...+...|. ..+|.-|.|...- -..++.|...+|.++. ..
T Consensus 1910 ~~-t----~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c---~~~~~~g~~~tF~A~v--~~ 1979 (2740)
T TIGR00864 1910 VL-Q----PGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCC---AAGIATGEEKNFTANV--QR 1979 (2740)
T ss_pred ee-c----CCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCc---ccceecCceEEEEEEE--ec
Confidence 11 1 22223 566678888888887766 4333333333 3447777776431 1148999999999998 66
Q ss_pred CCccccccceEEEEEE--Ec---eeeeEEEEeecCCCcEEEEEEceeeeEEEEEEeccCCCc-eeEEEEeee-----eEE
Q 000256 1318 GTPFHEAHNVILYHAE--TN---YHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQK-SDYVLVSVG-----AQL 1386 (1776)
Q Consensus 1318 G~~F~~~~~~~~l~~~--~n---~~dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~~~~i-~dyv~v~V~-----~~I 1386 (1776)
|.+-+ +.|. .+ -+.+ -+..+. ..+-+....|.-+++|.+.+.-+- .--..+.|. ..|
T Consensus 1980 g~~V~-------f~W~f~~~~~~g~~~-~~~~G~----~vty~~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L 2047 (2740)
T TIGR00864 1980 GKPVA-------FAWTFDLHHLHGDSL-VIHMGK----DVSYTAEAAGLLEIQLGAFNALGAENITLQLEAQDALMDAAL 2047 (2740)
T ss_pred CCceE-------EEEEeeecccCCCcc-eeecCC----ceEEccCCCcEEEEEEEEEcccCcccccEEEEEEeheeeEEE
Confidence 66633 1111 11 1222 112221 122223345555544443332211 011122232 234
Q ss_pred ecCCCeEEeccEEEEEEeecCCC--ceeeEEeeCCceEEE-eCccceEEEEeeeeEEEEEEeCCc----eEEEEEEEE
Q 000256 1387 YPQNPVLHVGGSLDFSVEGFSDQ--VSGHWFSDNESVVHV-HMPSGKAEAVGIGSTKVFFECPSM----KLQTTVTVL 1457 (1776)
Q Consensus 1387 ~P~~~~L~vGd~i~fs~~~~~~~--~~g~WssSn~sVl~V-D~~tG~a~A~~~G~atV~~~~~~~----~t~t~V~V~ 1457 (1776)
........+|-.++|.+...+.+ ..=.|.-.|++.... |.-+=.=+=..+|.=+|...+.+. .++.+|.|.
T Consensus 2048 ~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~~~~~sHtY~r~G~Y~V~V~a~N~VS~~~a~~~i~V~ 2125 (2740)
T TIGR00864 2048 QAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDTDEPRAEHEYLHPGDYRVQVNASNLVSFFSAHAEINVQ 2125 (2740)
T ss_pred eecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCccccCCceeEEEecCCccEEEEEEEEcceeeeeeEEEEEEE
Confidence 43334566788899987765422 234888887776543 221111111355655555555552 355555554
No 8
>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]
Probab=91.73 E-value=1.3 Score=54.32 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=64.0
Q ss_pred eEEecCCCeEEeccEEEEEEeecC---CCceeeEEeeCCceEEEeCccceEEEEeeeeEEEEEEeC-Cc-eEEEEEEEEe
Q 000256 1384 AQLYPQNPVLHVGGSLDFSVEGFS---DQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECP-SM-KLQTTVTVLS 1458 (1776)
Q Consensus 1384 ~~I~P~~~~L~vGd~i~fs~~~~~---~~~~g~WssSn~sVl~VD~~tG~a~A~~~G~atV~~~~~-~~-~t~t~V~V~~ 1458 (1776)
-.+.|....|.+|+...|+..-.| -+.+..|.|||++++.+|..+|...|.+.|++.|.+..- |. .....|+|..
T Consensus 184 vtl~k~s~~l~vG~t~tlta~v~P~~at~K~v~wtSsd~s~atv~~~~g~Itav~~Gs~~It~tt~dGs~~a~~~VtV~~ 263 (329)
T COG5492 184 ITVNKTSDTLKVGDTDTLTATVTPDNATDKTVTWTSSDPSKATVDDNTGKITAVAAGTANITATTNDGSKTATCKVTVNK 263 (329)
T ss_pred eeecCCccceEeeeeEEEEEEEcCCCCCCCceeEecCCCceeEecCCceEEEEEecCCceEEEEecccccceeEEEEecc
Confidence 478999999999999999977665 466789999999999988889999999999999988764 43 5666788885
Q ss_pred c
Q 000256 1459 K 1459 (1776)
Q Consensus 1459 ~ 1459 (1776)
.
T Consensus 264 ~ 264 (329)
T COG5492 264 A 264 (329)
T ss_pred c
Confidence 3
No 9
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=91.42 E-value=1.2e+02 Score=46.44 Aligned_cols=429 Identities=12% Similarity=0.072 Sum_probs=241.3
Q ss_pred eEEEEEeEEEEEEEEEEEEccCceEEEEeeEEEEEeCCCe---eccCeEEEecCceEEEEE--eeCCccceEEEEeecCc
Q 000256 935 SFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPR---IHPHDIFLVPGASYMLTL--KGGPTVGVYVDYTSTDE 1009 (1776)
Q Consensus 935 ~~~v~g~~~G~ttLtas~~~~~G~~i~S~~~~I~Vf~PL~---l~P~~ltLv~Gs~~ql~~--~GGP~p~~~v~fss~n~ 1009 (1776)
...-+=.+.|..+++.++.+..|.. +....|.|.+|.. +.+..-.+..+.++.+.. .+|- .....|...|.
T Consensus 1475 nptHtY~~~GtYtVtLTvtN~~Gss--t~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs--~v~ysWdFGDg 1550 (2740)
T TIGR00864 1475 EILHAFNSPGDFNIRLAAANEVGKN--EATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGD--DVRFSWILCDH 1550 (2740)
T ss_pred ceEEEcCCCceEEEEEEEECCCCce--EEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCC--ceeEEEEeCCC
Confidence 3344445789999999999887874 4566777777753 556555555666666654 2342 25677777765
Q ss_pred eEEEEEcccce-EEEEeeeeeEEEEEEecccceEEEEEeEEEEEE-ceeeEEEEeccc-------------eeecCcEEe
Q 000256 1010 EIATIHRSSGQ-LFAISPGNTTLIATVFGNGDVVICQAFSSVKVG-VPSSVTLNAQSD-------------QLAVGHEMP 1074 (1776)
Q Consensus 1010 ~VasV~~~~G~-Vt~~~~G~t~It~~v~~~~~~~v~e~~~~V~V~-~l~~i~I~a~~~-------------rl~~G~~~p 1074 (1776)
....... .-. =+=.+.|.-+|+.++.+..|.. .+++.|.|. .+++++|.+... -+..|..++
T Consensus 1551 ~ts~~~n-pt~~yTY~spGtYtVtLTvtN~~Gs~--~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~ 1627 (2740)
T TIGR00864 1551 CTPIFGG-NTIFYTFRSVGTFNIIVTAENDVGAA--QASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQ 1627 (2740)
T ss_pred CccccCC-CceEEeecCCceEEEEEEEecCCCcc--ceeEEEEEeecccceEEEeecccccCCcccccccceeccCCEEE
Confidence 4333311 111 2446899999999999976663 234556665 567888886532 345566666
Q ss_pred EEEeecCCceeeecceeeEEEEEECCcceeEEEecccccccccccccccccceEecccccccccceEEEEEEccceEEEE
Q 000256 1075 IHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDV 1154 (1776)
Q Consensus 1075 v~~~g~~g~pfsf~n~~l~f~Ws~s~~~vl~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~e~~f~v~v~~~~~G~t~I 1154 (1776)
+.+..-+|++ .++.|..-+.+- +.+. ..+ .......+.-..+|.-+|
T Consensus 1628 l~~~~~~GTn-------vsysW~~~~~n~----~dg~---~~~-------------------~tGk~~~vt~~~pG~Y~V 1674 (2740)
T TIGR00864 1628 FHAGFKDGTN-------LSFSWNAILDNE----PDGP---AFA-------------------GSGKGAKLNPLEAGPCDI 1674 (2740)
T ss_pred eeeccCCCCe-------eEEEEEEecCCC----CCCc---ccc-------------------ccCceeEEecCCCceEEE
Confidence 6644334544 569997732110 0000 000 012234555688999999
Q ss_pred EEEEEEecCCCCcccceeeeeeEEEEEEecccccccCCceeecCCCCccceeccCCcccccccccCCceeEEEEEeeccc
Q 000256 1155 ATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFC 1234 (1776)
Q Consensus 1155 ~vtv~~~~~~~~~~~~~~lsa~i~I~Vve~L~L~~~~p~~~~l~P~~~~~~llP~s~~~l~~t~~~~gs~~i~y~il~~~ 1234 (1776)
++++.-. -+ ..+++-.+.+.|+..= |.+. ..+. ...+|....| ......| ..+.|+.-= +
T Consensus 1675 tL~aSN~---vG-----~~t~s~~i~v~epi~~-L~L~----aS~~----~aavn~~V~f-s~~lt~G-S~vty~W~~-g 1734 (2740)
T TIGR00864 1675 FLQAANL---LG-----QATADCTIDFLEPAGN-LMLQ----ASDN----PAAVNALINL-SAELAEG-SGLQYRWFL-E 1734 (2740)
T ss_pred EEEEeec---cc-----ceeeEEEEEEEEEcCc-eEEe----ccCC----cccCCCeEEE-EEEecCC-CCcEEEEEE-C
Confidence 9998621 11 1256666777776531 1111 1111 1224554444 3223455 335565432 1
Q ss_pred CCCCccccccceecCCCe-EEecCcceeEEEEEEeccC-cceeEEEEEEEce-eeEEEEEccCCcceeeeecCcEEEEEE
Q 000256 1235 SEKNEAASKDDISIDGDT-IKTTSSNHLACIQAKDRSS-GRIEIASCVRVAE-VAQIRISNRYPLNVIHLAVGAECEIPI 1311 (1776)
Q Consensus 1235 ~~~~~v~~~d~~~I~~g~-i~t~~~~G~a~i~v~d~~~-g~qt~~~~V~Vs~-V~~l~i~~~~~~~~~~lpvG~s~~~~V 1311 (1776)
+..+. .. .+-. .-+....|.-.|+++.... |.......|.|.+ |.-|.|+...+.....+|.|.++.|.-
T Consensus 1735 -dG~s~--~~----s~p~~tHtf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a 1807 (2740)
T TIGR00864 1735 -EGDDL--ET----SEPFMSHSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQG 1807 (2740)
T ss_pred -CCCCc--cc----CCCceEEEccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEE
Confidence 11111 00 2222 3677788988888877666 5444566677755 777888755422333688888887766
Q ss_pred EEeccCCCccccccceEEEEEEEceeeeEEEEeecCCCcEEEEEEceeeeEEEEEEeccCCC-ceeEEEEeee-----eE
Q 000256 1312 SYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQ-KSDYVLVSVG-----AQ 1385 (1776)
Q Consensus 1312 ~~~D~~G~~F~~~~~~~~l~~~~n~~dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~~~~-i~dyv~v~V~-----~~ 1385 (1776)
+. +.|...+ ..|... |-- .. ..........+.|.-++++...+.-+ +.-.-.+.|+ -.
T Consensus 1808 ~v--stGsnVs-------w~W~f~--~g~----s~-~gk~v~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~ 1871 (2740)
T TIGR00864 1808 EL--ATGTNVS-------WCWAID--GGS----SK-MGKHACMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLE 1871 (2740)
T ss_pred Ec--cCCCeeE-------EEEEeC--CCC----cc-ccceeEEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEE
Confidence 52 2444332 334442 211 01 11134667777888777766444333 2222334444 35
Q ss_pred EecCCCeEEeccEEEEEEeecC-CCceeeEEeeCCceEEEeCccceEEE--EeeeeEEEEEEeCC
Q 000256 1386 LYPQNPVLHVGGSLDFSVEGFS-DQVSGHWFSDNESVVHVHMPSGKAEA--VGIGSTKVFFECPS 1447 (1776)
Q Consensus 1386 I~P~~~~L~vGd~i~fs~~~~~-~~~~g~WssSn~sVl~VD~~tG~a~A--~~~G~atV~~~~~~ 1447 (1776)
+...+....+|+.+.|+....+ -...=.|+..+......++ ...+.= ..+|.-.|.....+
T Consensus 1872 L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~-~~t~~HsY~~~G~Y~VtV~A~N 1935 (2740)
T TIGR00864 1872 LKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQP-GPRFSHSFPRVDDHMVNLRAKN 1935 (2740)
T ss_pred EecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecC-CCeEEeecCCCCcEEEEEEEEe
Confidence 5777778999999999986554 2444599999877666655 222221 25666666555555
No 10
>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]
Probab=87.18 E-value=19 Score=44.43 Aligned_cols=140 Identities=18% Similarity=0.135 Sum_probs=92.7
Q ss_pred CCCeeccCeEEEecCceEEEEEeeCC--ccceEEEEeecCceEEEEEcccceEEEEeeeeeEEEEEEecccceEEEEEeE
Q 000256 971 APPRIHPHDIFLVPGASYMLTLKGGP--TVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFS 1048 (1776)
Q Consensus 971 ~PL~l~P~~ltLv~Gs~~ql~~~GGP--~p~~~v~fss~n~~VasV~~~~G~Vt~~~~G~t~It~~v~~~~~~~v~e~~~ 1048 (1776)
.-+.+.|....|..|.+..|.+.==| -++..+.|+++|+++|+++...|.|+|++.|.+.|+++-.+..... .+
T Consensus 182 ~gvtl~k~s~~l~vG~t~tlta~v~P~~at~K~v~wtSsd~s~atv~~~~g~Itav~~Gs~~It~tt~dGs~~a----~~ 257 (329)
T COG5492 182 TGITVNKTSDTLKVGDTDTLTATVTPDNATDKTVTWTSSDPSKATVDDNTGKITAVAAGTANITATTNDGSKTA----TC 257 (329)
T ss_pred eeeeecCCccceEeeeeEEEEEEEcCCCCCCCceeEecCCCceeEecCCceEEEEEecCCceEEEEecccccce----eE
Confidence 44678899999999999999887655 2267899999999999954449999999999999999988754332 34
Q ss_pred EEEEEceeeEEEEeccceeecCcEEeEEEeecCCceeeecceeeEEEEEECCcceeEEEecccccccccccccccccceE
Q 000256 1049 SVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQ 1128 (1776)
Q Consensus 1049 ~V~V~~l~~i~I~a~~~rl~~G~~~pv~~~g~~g~pfsf~n~~l~f~Ws~s~~~vl~~~~~~~~~~~~~~~~~~~~~~~~ 1128 (1776)
.|.|.....+.+.... .+-..+- +.+.+ .-...|++++..+++....+
T Consensus 258 ~VtV~~~~~~~~~~~~---------~~~~~~~-~~~~~----d~~~~~t~~~~~~~~~~~~~------------------ 305 (329)
T COG5492 258 KVTVNKATDLTVSYNA---------HVTNTGW-QTDAS----DKVVAGTSSNSNIAEVDAIG------------------ 305 (329)
T ss_pred EEEeccccccceeeee---------eeeeeec-ccccc----cceEEeeecCCceeEeecce------------------
Confidence 5666433321111111 0111111 12211 13678999999877655321
Q ss_pred ecccccccccceEEEEEEccceEEEEEEEEEE
Q 000256 1129 FSNDLDKKELGFIKTLYGRSAGRTDVATTFSC 1160 (1776)
Q Consensus 1129 l~g~~~~~e~~f~v~v~~~~~G~t~I~vtv~~ 1160 (1776)
.+.+.++|..+++++..+
T Consensus 306 --------------~~~~~~~~~~t~~a~~~n 323 (329)
T COG5492 306 --------------LINAPSGGKITYTATTDN 323 (329)
T ss_pred --------------eEecCCCCceEEEEEEee
Confidence 355577888888877765
No 11
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=79.77 E-value=12 Score=35.71 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=42.7
Q ss_pred EEcCceeEEecCCCceEEEEeCCceEEE---ecCcceEEEEeeeceEEEEEecc
Q 000256 110 IRGNIPQVVALPSPHHRWSVSNSSVAQV---DNMMGLTQALRLGQTAVIVEDTR 160 (1776)
Q Consensus 110 ~~q~~~~~I~lPs~~y~~~~~n~~Va~l---d~~~~~vtA~~lG~T~V~l~d~n 160 (1776)
+..|+-+.+.+|.+-+.-.+.|++||.+ +++.=+++|.+.|.|++++-|++
T Consensus 7 l~~g~s~~l~~~~~~~rV~v~dp~Iadv~~~~~~~v~i~gk~~G~T~l~vw~~~ 60 (72)
T PF13629_consen 7 LTVGQSRILRLPGPITRVAVGDPEIADVTVLSPNEVYITGKKPGTTTLIVWDKD 60 (72)
T ss_pred EeCCCEEEEEcCCCcEEEEECCCCEEEEEEeCCCEEEEEEeCceeEEEEEECCC
Confidence 4556667788888889999999999887 44556999999999999999985
No 12
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=76.43 E-value=6.8 Score=37.36 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=45.7
Q ss_pred eeeecCcEEEEEEEEeccCCCccccccceEEEEEEEceeeeEEEEeecCCCcEEEEEEceeeeEEEEEEeccCCCceeE
Q 000256 1299 IHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDY 1377 (1776)
Q Consensus 1299 ~~lpvG~s~~~~V~~~D~~G~~F~~~~~~~~l~~~~n~~dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~~~~i~dy 1377 (1776)
..|++|.+..+.+. ..+ -.+.+.++++..+..-+ .| .+.+.|.+.|.|+|.+||+++..+..|
T Consensus 5 l~l~~g~s~~l~~~-------------~~~-~rV~v~dp~Iadv~~~~-~~-~v~i~gk~~G~T~l~vw~~~~~~~~~~ 67 (72)
T PF13629_consen 5 LTLTVGQSRILRLP-------------GPI-TRVAVGDPEIADVTVLS-PN-EVYITGKKPGTTTLIVWDKDGRVIQTY 67 (72)
T ss_pred EEEeCCCEEEEEcC-------------CCc-EEEEECCCCEEEEEEeC-CC-EEEEEEeCceeEEEEEECCCCCEEEEE
Confidence 45777777776441 112 24777888888888763 34 899999999999999999988754333
No 13
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=57.86 E-value=20 Score=43.73 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=51.2
Q ss_pred EEecCCCeEEeccEEEEEEeec---C----------CCceeeEEeeC-CceEEEeCccceEEEEeeeeEEEEEEeCCc
Q 000256 1385 QLYPQNPVLHVGGSLDFSVEGF---S----------DQVSGHWFSDN-ESVVHVHMPSGKAEAVGIGSTKVFFECPSM 1448 (1776)
Q Consensus 1385 ~I~P~~~~L~vGd~i~fs~~~~---~----------~~~~g~WssSn-~sVl~VD~~tG~a~A~~~G~atV~~~~~~~ 1448 (1776)
++.|.-..|.+|+..++..... + ..-.-+|+..- +..++||+ .|..+|+++|.|||...+||+
T Consensus 165 a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~~~~~~~-~g~~~al~pgd~ti~~~ipg~ 241 (375)
T PRK02654 165 ASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVKVSE-DGTIEALAPGDATIQGTIPGL 241 (375)
T ss_pred EEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCceeEEECC-CCcEEEecCCceEEEEeecce
Confidence 5788888899999999886422 2 01122899876 78999999 999999999999999999987
No 14
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=57.11 E-value=29 Score=34.27 Aligned_cols=63 Identities=25% Similarity=0.276 Sum_probs=46.8
Q ss_pred eCceeEEeeCCC----ceEEEEEcceeeEEEEEEcCcceEEEEeccCcceeeEEEEeeCcceEEEEEEEeccC
Q 000256 803 NPEYNLLFFNPD----AKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGL 871 (1776)
Q Consensus 803 ~P~~~~l~n~p~----~~~~l~i~gGSG~f~~sssn~~Va~v~~~~~g~~~~~i~v~P~~~G~~~V~V~Dlcl 871 (1776)
.++...++..|+ .+..|++.||.|.+.|..++.-+.+.. .+ .++...|..+|..+|+|.|-.-
T Consensus 16 P~~g~~~~~~~~~~~~~~l~l~a~~~~~~~~W~vdg~~~g~~~---~~---~~~~~~~~~~G~h~l~vvD~~G 82 (89)
T PF06832_consen 16 PPDGAVLALDPGIPERQPLVLKAAGGRGPVYWFVDGEPLGTTQ---PG---HQLFWQPDRPGEHTLTVVDAQG 82 (89)
T ss_pred cCCCCEEEeCCCCCccceEEEEEeCCCCcEEEEECCEEcccCC---CC---CeEEeCCCCCeeEEEEEEcCCC
Confidence 344566777763 477789999999999999986553321 11 4588889999999999999544
No 15
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=47.30 E-value=83 Score=31.25 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=44.4
Q ss_pred CCeEEEEEEEEcCCCCeEeecCCceEEEEecCCCcceEeecccccccCCCcceeEEEEe-eccceEEEEEEEeeE
Q 000256 695 GQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQ-NESGLCVVRATASGF 768 (1776)
Q Consensus 695 ~r~~~l~v~vfD~~Grkf~N~SSL~l~W~~s~~~~l~~~~~~~~~~~~~s~~~~~~~l~-~~~G~~~I~At~~gy 768 (1776)
.....|.+.+.|++|++.-+ ..+.|+.+. .....++.... .-|..|.... .++ ...|..+|+|++.|+
T Consensus 17 ~d~~~i~v~v~D~~Gnpv~~---~~V~f~~~~-~~~~~~~~~~~-~Td~~G~a~~-~l~~~~~G~~~vta~~~~~ 85 (92)
T smart00634 17 SDAITLTATVTDANGNPVAG---QEVTFTTPS-GGALTLSKGTA-TTDANGIATV-TLTSTTAGVYTVTASLENG 85 (92)
T ss_pred cccEEEEEEEECCCCCCcCC---CEEEEEECC-CceeeccCCee-eeCCCCEEEE-EEECCCCcEEEEEEEECCC
Confidence 46789999999999999976 459999876 33223332211 2233443222 233 578999999998875
No 16
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=34.76 E-value=1.7e+02 Score=28.85 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=41.0
Q ss_pred ceeEEEEEEecCCCCCCCceEEEecCceeEEEecCeEE--EecCCCeEEEEEEeccCC
Q 000256 328 IYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVV--QAKKPGKATVKVVSIFDS 383 (1776)
Q Consensus 328 ~~q~~~L~A~GGsg~~~~~y~WsSsn~~VasV~~~Gvv--ta~~~G~t~V~a~d~~n~ 383 (1776)
..+.+.|+|.||.+ .+.|.-+..-+.+.....-+ ....+|.-+|.|.|..+.
T Consensus 30 ~~~~l~l~a~~~~~----~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vvD~~G~ 83 (89)
T PF06832_consen 30 ERQPLVLKAAGGRG----PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVVDAQGR 83 (89)
T ss_pred ccceEEEEEeCCCC----cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEEcCCCC
Confidence 35689999999999 99999999888666655433 333689999999987765
No 17
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=30.47 E-value=1.5e+03 Score=32.43 Aligned_cols=143 Identities=13% Similarity=0.188 Sum_probs=86.3
Q ss_pred ccCceEEEEeeEEEEEeCCC-eeccCe-EEEe-cCceEEEEEeeCCccceEEEEeecCceEEEEEcccceEEEEeeeeeE
Q 000256 954 QQSGHEILSQPIRVEVYAPP-RIHPHD-IFLV-PGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTT 1030 (1776)
Q Consensus 954 ~~~G~~i~S~~~~I~Vf~PL-~l~P~~-ltLv-~Gs~~ql~~~GGP~p~~~v~fss~n~~VasV~~~~G~Vt~~~~G~t~ 1030 (1776)
++.|....++-++|..-+|. ...|-+ ..++ .|...-|.+.==-.|...+.|.-..+ .-+ ++|.++-..-|.-.
T Consensus 407 Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~--~~~--~~~r~~i~edGtL~ 482 (1051)
T KOG3513|consen 407 NKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGE--KLL--QSGRIRILEDGTLE 482 (1051)
T ss_pred cccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCc--ccc--cCceEEECCCCcEE
Confidence 66787778888888877554 477733 3343 68877766643223477889987655 222 26776666666655
Q ss_pred EE-----------EEEecccceEEEEEeEEEEEEceeeEEEEeccceeecCcEEeEEEeecCCceeeeccee-eEEEEEE
Q 000256 1031 LI-----------ATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELC-RNYNWTI 1098 (1776)
Q Consensus 1031 It-----------~~v~~~~~~~v~e~~~~V~V~~l~~i~I~a~~~rl~~G~~~pv~~~g~~g~pfsf~n~~-l~f~Ws~ 1098 (1776)
|. ..+.++-|+. +.++.+.|...+.|+.....+.+.+|..+-+.=... |+... +.|.|.-
T Consensus 483 I~n~t~~DaG~YtC~A~N~~G~a--~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~s------hD~~ld~~f~W~~ 554 (1051)
T KOG3513|consen 483 ISNVTRSDAGKYTCVAENKLGKA--ESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEAS------HDPSLDITFTWKK 554 (1051)
T ss_pred ecccCcccCcEEEEEEEcccCcc--ceEEEEEEecCceEEeccchhhhccCceEEEEeecc------cCCCcceEEEEEE
Confidence 54 2222333442 445777777888888755555677777664442221 23332 6999999
Q ss_pred CCcceeEEEec
Q 000256 1099 EDEKILGFWLG 1109 (1776)
Q Consensus 1099 s~~~vl~~~~~ 1109 (1776)
+++ .+++.+.
T Consensus 555 nG~-~id~~~~ 564 (1051)
T KOG3513|consen 555 NGR-PIDFNPD 564 (1051)
T ss_pred CCE-EhhccCC
Confidence 554 4466544
No 18
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=26.47 E-value=1e+02 Score=34.61 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=7.7
Q ss_pred ccccCCCCCCCCcccc
Q 000256 1735 TVSNEQSPRTPQPFVD 1750 (1776)
Q Consensus 1735 ~~~~~~s~~~~~~~~~ 1750 (1776)
..|...+|++++|..-
T Consensus 145 ~~y~~~pp~~~~~~~~ 160 (179)
T PF13908_consen 145 QGYQPPPPQPGQPYPP 160 (179)
T ss_pred CCCCcCCCCCCCCCCC
Confidence 3455555555544433
No 19
>PF07347 CI-B14_5a: NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a); InterPro: IPR009947 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains the eukaryotic NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a). This is approximately 100 residues long, and forms part of a multiprotein complex that resides on the inner mitochondrial membrane [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport, 0005743 mitochondrial inner membrane
Probab=25.55 E-value=44 Score=33.95 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=10.6
Q ss_pred ccchhcccccCC
Q 000256 1761 NYRREARRRFNV 1772 (1776)
Q Consensus 1761 ~y~~~~~~~~~~ 1772 (1776)
||.|+|||-..|
T Consensus 49 Yy~RD~RRev~P 60 (97)
T PF07347_consen 49 YYTRDARREVQP 60 (97)
T ss_pred ccccccccccCC
Confidence 999999998766
No 20
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=24.15 E-value=4.9e+02 Score=25.70 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=46.1
Q ss_pred ceeeeecCcEEEEEEEEeccCCCccccccceEEEEEEEceeee------EEEE--eecCCCcEEEEEEceeeeEEEEEEe
Q 000256 1297 NVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDV------VSIN--YTLNGSGKIYLKAKQHGRALVQVSM 1368 (1776)
Q Consensus 1297 ~~~~lpvG~s~~~~V~~~D~~G~~F~~~~~~~~l~~~~n~~dl------v~i~--~~~~~n~t~~v~av~~G~t~L~v~d 1368 (1776)
-+....+|...+|.|..+|..|.+...... .+.+++..++- +.+. ...++...+.......|.=.|.|+-
T Consensus 13 gl~~~~~g~~~~F~V~~~d~~g~~~~~~~~--~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~ 90 (101)
T PF00630_consen 13 GLEPAVVGEPATFTVDTRDAGGNPVSSGGD--EFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKI 90 (101)
T ss_dssp GGTEEETTSEEEEEEEETTTTSSBEESTSS--EEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEE
T ss_pred ccCCeECCCcEEEEEEEccCCCCccccCCc--eeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEE
Confidence 344568999999999999999999985433 24555543322 2233 2222333444667788988888884
Q ss_pred c
Q 000256 1369 N 1369 (1776)
Q Consensus 1369 ~ 1369 (1776)
.
T Consensus 91 ~ 91 (101)
T PF00630_consen 91 N 91 (101)
T ss_dssp S
T ss_pred C
Confidence 3
No 21
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=21.06 E-value=3.6e+02 Score=27.37 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred EEecCCCeEEEEEEEEcCCCCeEeecCCceEEE--EecCCCcceEeecc--cccccCCCcceeEEEEeeccceEEEEEEE
Q 000256 690 VTVANGQTIRIAAVGISSSGEAFANSSSLCLGW--ELSNCDGLAYWDDA--YGSQKSASSWERFLVLQNESGLCVVRATA 765 (1776)
Q Consensus 690 v~l~~~r~~~l~v~vfD~~Grkf~N~SSL~l~W--~~s~~~~l~~~~~~--~~~~~~~s~~~~~~~l~~~~G~~~I~At~ 765 (1776)
+.........|.+.+.|++|+++ .+..+.| ..+. +.+... ... -|..|.-..-.-..+.|..+|+|++
T Consensus 17 ~~a~g~~~~tltatV~D~~gnpv---~g~~V~f~~~~~~----~~l~~~~~~~~-Td~~G~a~~tltst~aG~~~VtA~~ 88 (100)
T PF02369_consen 17 AVADGSDTNTLTATVTDANGNPV---PGQPVTFSSSSSG----GTLSPTNTSAT-TDSNGIATVTLTSTKAGTYTVTATV 88 (100)
T ss_dssp EESSSSS-EEEEEEEEETTSEB----TS-EEEE--EESS----SEES-CEE-EE-E-TTSEEEEEEE-SS-EEEEEEEEE
T ss_pred eEeCCcCcEEEEEEEEcCCCCCC---CCCEEEEEEcCCC----cEEecCccccE-ECCCEEEEEEEEecCceEEEEEEEE
Q ss_pred ee
Q 000256 766 SG 767 (1776)
Q Consensus 766 ~g 767 (1776)
.+
T Consensus 89 ~~ 90 (100)
T PF02369_consen 89 DG 90 (100)
T ss_dssp TT
T ss_pred CC
No 22
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=20.48 E-value=1.5e+02 Score=29.39 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=15.2
Q ss_pred chhhhhhhhhhhHHHHHHHHh
Q 000256 1680 RIFASFIGFFAVFSLIVVFSI 1700 (1776)
Q Consensus 1680 ~~~~~~~~~~~~~~~~~~~~~ 1700 (1776)
...|+|..+.|+||+|-+|..
T Consensus 26 ~lMtILivLVIIiLlImlfqs 46 (85)
T PF10717_consen 26 TLMTILIVLVIIILLIMLFQS 46 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 367777777777777777766
No 23
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=1.1e+03 Score=28.93 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=48.8
Q ss_pred EEecCCCceEEEEeCCceEEEecCcceEEEEeeeceEEEEEeccccCCcccEEEEEEcCC
Q 000256 117 VVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPD 176 (1776)
Q Consensus 117 ~I~lPs~~y~~~~~n~~Va~ld~~~~~vtA~~lG~T~V~l~d~nv~~~~~~~~I~VV~P~ 176 (1776)
.+..|+-|-.+.++-.+++-.|+ +|++-|+..|.-.|-|-|.+.-+..|..+..+-+|.
T Consensus 128 DlR~~~cqg~l~~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~ 186 (311)
T KOG1446|consen 128 DLRVKKCQGLLNLSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND 186 (311)
T ss_pred EecCCCCceEEecCCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC
Confidence 34457777888888899999999 899999999999999999888877887777665443
Done!