Query 000256
Match_columns 1776
No_of_seqs 212 out of 249
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 18:40:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000256.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_32-36//hhsearch_pdb/000256hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ncx_A Intimin, intimin adhere 1.0 1 1 95.1 5.1 89 298-399 3-97 (189)
2 1f00_I Intimin; immunoglobulin 1.0 1 1 57.6 11.2 160 213-399 22-185 (282)
3 3ncx_A Intimin, intimin adhere 1.0 1 1 50.9 4.2 68 966-1038 4-84 (189)
4 2l04_A Major tail protein V; b 1.0 1 1 50.3 6.5 63 973-1036 9-76 (91)
5 2l04_A Major tail protein V; b 1.0 1 1 49.5 5.8 47 346-393 39-88 (91)
6 1cwv_A Invasin; integrin-bindi 1.0 1 1 42.3 21.0 53 984-1037 326-380 (492)
7 1f1s_A Hyaluronate lyase; the 1.0 1 1 40.7 6.8 52 345-398 28-79 (814)
8 1f00_I Intimin; immunoglobulin 1.0 1 1 33.9 13.1 99 932-1036 59-170 (282)
9 1cwv_A Invasin; integrin-bindi 1.0 1 1 33.8 28.5 238 211-498 27-286 (492)
10 1f1s_A Hyaluronate lyase; the 1.0 1 1 27.7 6.2 38 121-160 26-63 (814)
No 1
>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion; 2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A
Probab=1.00 E-value=1 Score=95.09 Aligned_cols=89 Identities=27% Similarity=0.408 Sum_probs=73.6
Q ss_pred EEEEEEEEEEEECCCCCCCCCEE------ECCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEECCEEEEECCCC
Q ss_conf 99999966688113567888469------923856612689999922788999716997159514999007189934788
Q 000256 298 QEIMVCDRIKFSLDQTNGVSESI------LLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPG 371 (1776)
Q Consensus 298 qev~I~~pI~i~~~~~~~~p~~i------~lP~~~~~~q~~~L~A~GGsg~~~~~y~WsSsn~~VatV~~~Gvvta~~~G 371 (1776)
.||+.|.+++||. ..+++ .||-.+..|.+|+|+|.||.+ +|+|+|+||.||+||.+|+|++...|
T Consensus 3 ~~v~ff~~l~id~-----~v~iig~~v~g~lP~~wlqygqFkL~a~Ggn~----~ytW~Ssdp~IAsVDssG~VT~~~kG 73 (189)
T 3ncx_A 3 TEVTFFDELKIDN-----KVDIIGNNVRGELPNIWLQYGQFKLKASGGDG----TYSWYSENTSIATVDASGKVTLNGKG 73 (189)
T ss_dssp CCCCCCCCCEECS-----SEEETTTTEEESCCSSEETTCEEECCEESTTS----CEEEEESCTTTEEECTTSEEEECSSS
T ss_pred CCEEEEEEEEECC-----CEEEEECCCCCCCCCHHHHCEEEEEEECCCCC----CEEEEECCCCEEEECCCCCEEEECCC
T ss_conf 6168764676078-----44899624477788301102699998469986----26888489986788589838981368
Q ss_pred EEEEEEEECCCCCEEEEEEEEEECCCEE
Q ss_conf 1899999114873034799999575106
Q 000256 372 KATVKVVSIFDSFNYDEIVIEVSTPSSM 399 (1776)
Q Consensus 372 ~t~I~a~d~~n~~n~~~~~V~V~~p~~i 399 (1776)
.++|.|.+..+. ++.+.|..|..|
T Consensus 74 tatITats~dg~----tatytvt~p~~~ 97 (189)
T 3ncx_A 74 SVVIKATSGDKQ----TVSYTIKAPSYM 97 (189)
T ss_dssp CEEEEEEETTSC----EEEEEECCCSCE
T ss_pred CEEEEEECCCCC----EEEEEEECCCEE
T ss_conf 479999918997----689999746028
No 2
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=1.00 E-value=1 Score=57.61 Aligned_cols=160 Identities=21% Similarity=0.325 Sum_probs=95.7
Q ss_pred EEEEEEECCCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECEE-EEEEEEEEEEEEEEEEEEECCCCCE
Q ss_conf 999999528999644983116838991077531699420366520234554289-9996210399999998974067842
Q 000256 213 LIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRI-LKATSQGLGKLTASLTYFSGLHDTK 291 (1776)
Q Consensus 213 ~i~v~lfD~~~~~~~i~~~~~~~i~~~~~~~~~~~i~~~~~~~ng~y~~~n~~~-v~a~~~G~~~I~Asl~~~~~~~~~~ 291 (1776)
.+++.+.| + | |++ - +..+.+...... +.-.....+.+|.. .+ ++..++|..+++|++.... .
T Consensus 22 t~tatV~D-~-g-npv-~--g~~V~fs~~~G~-l~~~~~~Td~~G~a-----tvtltst~aG~~~VtA~v~~~~----~- 84 (282)
T 1f00_I 22 TYTVKVMK-G-D-KPV-S--NQEVTFTTTLGK-LSNSTEKTDTNGYA-----KVTLTSTTPGKSLVSARVSDVA----V- 84 (282)
T ss_dssp EEEEEEEE-T-T-EEC-T--TCEEEEEESSSE-ESCSEEECCTTSEE-----EEEEECSSCEEECEEEEETTCC----C-
T ss_pred EEEEEEEE-C-C-CCC-C--CCEEEEECCCCC-CCCCEEEECCCCEE-----EEEEECCCCEEEEEEEEECCCC----C-
T ss_conf 99999997-9-9-216-7--867999858973-13652577899579-----9999827754799999977876----4-
Q ss_pred EEEEEEEEEEEEEEEEEEC-CCC-CCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEE-CCEEEEEC
Q ss_conf 3478889999996668811-356-78884699238566126899999227889997169971595149990-07189934
Q 000256 292 EVLKVVQEIMVCDRIKFSL-DQT-NGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSIT-ASGVVQAK 368 (1776)
Q Consensus 292 ~~l~~~qev~I~~pI~i~~-~~~-~~~p~~i~lP~~~~~~q~~~L~A~GGsg~~~~~y~WsSsn~~VatV~-~~Gvvta~ 368 (1776)
. + ..++|+++.+++++- ... .....-=.||-.....-+|+|.+.||.+ +|.|+|+++.+++|+ ..|.++.+
T Consensus 85 ~-~-~a~~VtFva~~~i~~~~v~vng~~adg~~p~t~~~~a~~~l~~~~~n~----~ytWsSs~~~~~sVd~~~G~Vt~~ 158 (282)
T 1f00_I 85 D-V-KAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNG----KYTWRSANPAIASVDASSGQVTLK 158 (282)
T ss_dssp C-E-ECCCEEEECCCEECTTCEEETTTCCEESCCSEEETTCEEECCEESTTS----CEEEEESCTTTEEECTTTCEEEEC
T ss_pred C-C-CCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCC----EEEEECCCCCEEEECCCCCEEEEC
T ss_conf 2-3-445512550121123215630652576687633111599999469961----577742687269970787669977
Q ss_pred CCCEEEEEEEECCCCCEEEEEEEEEECCCEE
Q ss_conf 7881899999114873034799999575106
Q 000256 369 KPGKATVKVVSIFDSFNYDEIVIEVSTPSSM 399 (1776)
Q Consensus 369 ~~G~t~I~a~d~~n~~n~~~~~V~V~~p~~i 399 (1776)
..|..+|.|.+..+. .....+..|.-+
T Consensus 159 ~~GtvtITatsg~~~----t~t~ti~~~~wf 185 (282)
T 1f00_I 159 EKGTTTISVISSDNQ----TATYTIATPNSL 185 (282)
T ss_dssp SSSCEEEEEEETTTE----EEEEEECCCSEE
T ss_pred CCCEEEEEEECCCCE----EEEEEEECCEEE
T ss_conf 885599999969980----799998177289
No 3
>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion; 2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A
Probab=1.00 E-value=1 Score=50.90 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=57.6
Q ss_pred EEEEECCCEECCCEEEEEC-------------CCEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEEEEEEEEE
Q ss_conf 9999579823167379902-------------866999994178634079995438408999945436999834545999
Q 000256 966 RVEVYAPPRIHPHDIFLVP-------------GASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLI 1032 (1776)
Q Consensus 966 ~I~Vf~PL~l~P~~itLv~-------------Gs~~qi~~~GGP~p~~~i~fs~~n~~VatV~~~~G~Vt~~~~G~t~It 1032 (1776)
.++-|.+|.++- ++.++= ...|+|...|| ...+.|+++|+.||+||. +|+|++++.|.++|+
T Consensus 4 ~v~ff~~l~id~-~v~iig~~v~g~lP~~wlqygqFkL~a~Gg---n~~ytW~Ssdp~IAsVDs-sG~VT~~~kGtatIT 78 (189)
T 3ncx_A 4 EVTFFDELKIDN-KVDIIGNNVRGELPNIWLQYGQFKLKASGG---DGTYSWYSENTSIATVDA-SGKVTLNGKGSVVIK 78 (189)
T ss_dssp CCCCCCCCEECS-SEEETTTTEEESCCSSEETTCEEECCEEST---TSCEEEEESCTTTEEECT-TSEEEECSSSCEEEE
T ss_pred CEEEEEEEEECC-CEEEEECCCCCCCCCHHHHCEEEEEEECCC---CCCEEEEECCCCEEEECC-CCCEEEECCCCEEEE
T ss_conf 168764676078-448996244777883011026999984699---862688848998678858-983898136847999
Q ss_pred EEEECC
Q ss_conf 999636
Q 000256 1033 ATVFGN 1038 (1776)
Q Consensus 1033 ~~v~~~ 1038 (1776)
++-.++
T Consensus 79 ats~dg 84 (189)
T 3ncx_A 79 ATSGDK 84 (189)
T ss_dssp EEETTS
T ss_pred EECCCC
T ss_conf 991899
No 4
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=1.00 E-value=1 Score=50.29 Aligned_cols=63 Identities=22% Similarity=0.222 Sum_probs=31.2
Q ss_pred CEECCCEEEEECCCEEEEEEEECCCC--CEEEEEEECCCEEEEEECCCC---EEEEEEEEEEEEEEEEE
Q ss_conf 82316737990286699999417863--407999543840899994543---69998345459999996
Q 000256 973 PRIHPHDIFLVPGASYMLTLKGGPTV--GVYVDYTSTDEEIATIHRSSG---QLFAISPGNTTLIATVF 1036 (1776)
Q Consensus 973 L~l~P~~itLv~Gs~~qi~~~GGP~p--~~~i~fs~~n~~VatV~~~~G---~Vt~~~~G~t~It~~v~ 1036 (1776)
+.|+|..++|..|.+.+|...=-|.- +..+.|+++|++||+|+. +| .|+|++.|.++|+++..
T Consensus 9 i~l~~~~~~l~vG~t~~L~atv~P~~Atnk~vtwsSsd~~vATVd~-~G~~~~Vt~v~~GtatITatt~ 76 (91)
T 2l04_A 9 MTVTPASTSVVKGQSTTLTVAFQPEGVTDKSFRAVSADKTKATVSV-SGMTITVNGVAAGKVNIPVVSG 76 (91)
T ss_dssp EEEECCCEEEETTCEEEEEEEECCSSCCCCCEEECCSCCSSCEEEE-ETTEEEEECSSSEEEECCEEET
T ss_pred EEEECCCEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCEEEEEC-CCCEEEEEEECCCEEEEEEEEC
T ss_conf 9980871499769879999999536467448999979999999996-6999999997075799999989
No 5
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=1.00 E-value=1 Score=49.47 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=20.8
Q ss_pred CEEEEECCCEEEEEECCE---EEEECCCCEEEEEEEECCCCCEEEEEEEEE
Q ss_conf 169971595149990071---899347881899999114873034799999
Q 000256 346 DYKWFSSDMATVSITASG---VVQAKKPGKATVKVVSIFDSFNYDEIVIEV 393 (1776)
Q Consensus 346 ~y~WsSsn~~VatV~~~G---vvta~~~G~t~I~a~d~~n~~n~~~~~V~V 393 (1776)
.+.|+|+|+.||+|+.+| .+++...|.++|.|....+. ..+.|.|.|
T Consensus 39 ~vtwsSsd~~vATVd~~G~~~~Vt~v~~GtatITatt~dG~-~~at~~VtV 88 (91)
T 2l04_A 39 SFRAVSADKTKATVSVSGMTITVNGVAAGKVNIPVVSGNGE-FAAVAEITV 88 (91)
T ss_dssp CEEECCSCCSSCEEEEETTEEEEECSSSEEEECCEEETTTT-EEECCEEEE
T ss_pred EEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEEEECCCC-EEEEEEEEE
T ss_conf 89999799999999966999999997075799999989999-899999999
No 6
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=1.00 E-value=1 Score=42.31 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=29.1
Q ss_pred CCCEEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEEEEE--EEEEEEEEC
Q ss_conf 286699999417863407999543840899994543699983454--599999963
Q 000256 984 PGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGN--TTLIATVFG 1037 (1776)
Q Consensus 984 ~Gs~~qi~~~GGP~p~~~i~fs~~n~~VatV~~~~G~Vt~~~~G~--t~It~~v~~ 1037 (1776)
-|+.+|+...|+|..+..+.|+++++..+++|. +|.++=...|. .+|+++..+
T Consensus 326 ~~A~f~~~~~~~~~~n~~y~wsss~~~~~tvd~-~G~vt~~~~~~~~vtITat~~~ 380 (492)
T 1cwv_A 326 KNATFQLQMDNDVANNTQYEWSSSFTPNVSVND-QGQVTITYQTYSEVAVTAKSKK 380 (492)
T ss_dssp TTCEEEEEETTCGGGGGGEEEEESSTTTEEECT-TCEEEECSCCSSCEEEEEEESS
T ss_pred EEEEEEEECCCCCCCCCCEEECCCCCCEEEECC-CCEEEEEECCCCEEEEEEEECC
T ss_conf 769999912896366772311246862588788-8359999548977999999688
No 7
>1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} SCOP: a.102.3.2 b.1.18.2 b.24.1.1 b.30.5.2 PDB: 1i8q_A* 1lxm_A*
Probab=1.00 E-value=1 Score=40.70 Aligned_cols=52 Identities=19% Similarity=0.376 Sum_probs=44.4
Q ss_pred CCEEEEECCCEEEEEECCEEEEECCCCEEEEEEEECCCCCEEEEEEEEEECCCE
Q ss_conf 716997159514999007189934788189999911487303479999957510
Q 000256 345 SDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSS 398 (1776)
Q Consensus 345 ~~y~WsSsn~~VatV~~~Gvvta~~~G~t~I~a~d~~n~~n~~~~~V~V~~p~~ 398 (1776)
++|.|+++|++||+|+ +|++++...|.++|++.|..+.. .+++.|.|..+..
T Consensus 28 ~~~~~~~~~~~~~~~~-~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (814)
T 1f1s_A 28 ADYQYTLTNPSLGKIV-GGILYPNATGSTTVKISDKSGKI-IKEVPLSVTASTE 79 (814)
T ss_dssp TTSEEEESSGGGEEEE-TTEEEECSCEEEEEEEECTTCCE-EEEEEEEEECCCC
T ss_pred CCEEEEECCCCEEEEE-CCEEEEECCCEEEEEEECCCCCE-EEEEEEECCCCCC
T ss_conf 8637996488358972-76788604864899998689987-8998742167783
No 8
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=1.00 E-value=1 Score=33.92 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=70.4
Q ss_pred CEEEEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCEECCCEEE-------------EECCCEEEEEEEECCCC
Q ss_conf 00059999957778999999981576099974389999579823167379-------------90286699999417863
Q 000256 932 SMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIF-------------LVPGASYMLTLKGGPTV 998 (1776)
Q Consensus 932 ~~~~~~i~g~~~G~TtLtas~~~~~G~~i~S~~~~I~Vf~PL~l~P~~it-------------Lv~Gs~~qi~~~GGP~p 998 (1776)
+-....++....|..+++|++.+ .+... ....++-++++++.--.+. ..-++.+++...||.
T Consensus 59 G~atvtltst~aG~~~VtA~v~~-~~~~~--~a~~VtFva~~~i~~~~v~vng~~adg~~p~t~~~~a~~~l~~~~~n-- 133 (282)
T 1f00_I 59 GYAKVTLTSTTPGKSLVSARVSD-VAVDV--KAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGN-- 133 (282)
T ss_dssp SEEEEEEECSSCEEECEEEEETT-CCCCE--ECCCEEEECCCEECTTCEEETTTCCEESCCSEEETTCEEECCEESTT--
T ss_pred CEEEEEEECCCCEEEEEEEEECC-CCCCC--CCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCC--
T ss_conf 57999998277547999999778-76423--44551255012112321563065257668763311159999946996--
Q ss_pred CEEEEEEECCCEEEEEECCCCEEEEEEEEEEEEEEEEE
Q ss_conf 40799954384089999454369998345459999996
Q 000256 999 GVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVF 1036 (1776)
Q Consensus 999 ~~~i~fs~~n~~VatV~~~~G~Vt~~~~G~t~It~~v~ 1036 (1776)
..+.|+++++.+++|+.++|.|+-...|..+|+++-.
T Consensus 134 -~~ytWsSs~~~~~sVd~~~G~Vt~~~~GtvtITatsg 170 (282)
T 1f00_I 134 -GKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISS 170 (282)
T ss_dssp -SCEEEEESCTTTEEECTTTCEEEECSSSCEEEEEEET
T ss_pred -CEEEEECCCCCEEEECCCCCEEEECCCCEEEEEEECC
T ss_conf -1577742687269970787669977885599999969
No 9
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=1.00 E-value=1 Score=33.77 Aligned_cols=238 Identities=14% Similarity=0.154 Sum_probs=111.8
Q ss_pred EEEEEEEEECCCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECEEEEEEEEEEEEEEEEEEEEECCCCC
Q ss_conf 99999999528999644983116838991077531699420366520234554289999621039999999897406784
Q 000256 211 QYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDT 290 (1776)
Q Consensus 211 ~Y~i~v~lfD~~~~~~~i~~~~~~~i~~~~~~~~~~~i~~~~~~~ng~y~~~n~~~v~a~~~G~~~I~Asl~~~~~~~~~ 290 (1776)
...+++.|.|++ | +++ .+..+.+.........-....++.+|.+. .-++..++|..+|+|++. +
T Consensus 27 ~~~ltatV~D~~-G-npv---~g~~Vtf~~~~g~~~~~~t~~Td~~G~a~----~tltst~aG~~~VtAt~~------g- 90 (492)
T 1cwv_A 27 AITVEFTVADFE-G-KPL---AGQEVVITTNNGALPNKITEKTDANGVAR----IALTNTTDGVTVVTAEVE------G- 90 (492)
T ss_dssp CEEEEEEEECTT-S-CBC---CSCEEEEECCTTCBSCEEEEECCTTSEEE----EEEBCSSCEEEEEEEEET------T-
T ss_pred EEEEEEEEECCC-C-CCC---CCCEEEEEECCCCCCCCCCEEECCCCEEE----EEEECCCCEEEEEEEEEC------C-
T ss_conf 089999999489-9-987---99889999789840144204458996599----999767652799999979------8-
Q ss_pred EEEEEEEEEEEEEE-EE-----EEECCCCCCCCCEEECCCCCCC-EEEEEEEE--ECCCCCCCCCEEEEECCCEEEEE--
Q ss_conf 23478889999996-66-----8811356788846992385661-26899999--22788999716997159514999--
Q 000256 291 KEVLKVVQEIMVCD-RI-----KFSLDQTNGVSESILLPWAPGI-YQEVELMA--TGGCAKTSSDYKWFSSDMATVSI-- 359 (1776)
Q Consensus 291 ~~~l~~~qev~I~~-pI-----~i~~~~~~~~p~~i~lP~~~~~-~q~~~L~A--~GGsg~~~~~y~WsSsn~~VatV-- 359 (1776)
......+.+.. +. .|.. .|.-+.- .+. ...++++. ..|....+....|+..+..+..+
T Consensus 91 ---~s~s~~v~f~a~~~~a~~s~l~~-----~~~~~~A---~g~~~~tltatv~Da~GNpv~g~~Vtf~~~~g~~~~~Tt 159 (492)
T 1cwv_A 91 ---QRQSVDTHFVKGTIAADKSTLAA-----VPTSIIA---DGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITD 159 (492)
T ss_dssp ---EEEEEEEEEECCCBCGGGCEEEE-----ESSEEET---TSSCCEEEEEECBBTTSCBCCSCCEEEEESSSEECCCEE
T ss_pred ---CCCEEEEEEEECCCCCCCEEEEE-----ECCCEEC---CCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEE
T ss_conf ---41026789863147643205998-----3341241---773048999999948999958858999977984234686
Q ss_pred ECCEEEEEC----CCCEEEEEEEECCCCCEEEEEEEEEEC-------CCEEEEEECCEEEEEECCEEEEEEEEEECCCCC
Q ss_conf 007189934----788189999911487303479999957-------510699226207987186899999998139710
Q 000256 360 TASGVVQAK----KPGKATVKVVSIFDSFNYDEIVIEVST-------PSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAY 428 (1776)
Q Consensus 360 ~~~Gvvta~----~~G~t~I~a~d~~n~~n~~~~~V~V~~-------p~~i~i~p~~~~E~~Vg~~L~L~v~~~~~~G~~ 428 (1776)
+.+|+.+.. .+|..+|.|.......-.....|.+.. ...+..-+ ....+--.+...|.+.+.|.+|++
T Consensus 160 d~~G~at~tlts~~aG~~tVtA~v~g~~~~~~s~~vtf~a~~~~~~~~~~l~v~~-~~~~A~g~~~~tltatv~D~~GNp 238 (492)
T 1cwv_A 160 HNDGTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFTADPIPDAGRSSFTVST-PDILADGTMSSTLSFVPVDKNGHF 238 (492)
T ss_dssp CSSSEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEEEECCSSCCTTTCEEEESC-SEEETTSCCCEEEEEECBCTTSCB
T ss_pred CCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECC-CCEEECCCCEEEEEEEEECCCCCC
T ss_conf 6894899999846763899999988852123425799981676543013576266-616607864089999999899899
Q ss_pred CCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEE
Q ss_conf 1457897415899517862699036766421012598533455568986179998842143999999840
Q 000256 429 FYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSK 498 (1776)
Q Consensus 429 Fs~C~~l~~~vews~~~~if~~~~~~~~~~~l~~~~~~~~~~~~~~~~Cs~~~i~a~~~G~t~ltvs~~~ 498 (1776)
+..... +.|..+...+..-+ . . + ...-+.+.+++...|..++++.+..
T Consensus 239 v~g~~~----V~f~~~G~~v~~s~-------~-T--~--------~~G~~t~t~t~~~aG~~tVtA~~~g 286 (492)
T 1cwv_A 239 ISGMQG----LSFTQNGVPVSISP-------I-T--E--------QPDSYTATVVGNSVGDVTITPQVDT 286 (492)
T ss_dssp CCSCCS----EEEEEEESCCEECC-------C-E--E--------CSSCEEEEEECSSCEEEEEEEEETT
T ss_pred CCCCCE----EEEECCCCEEEEEE-------E-E--C--------CCCEEEEEEECCCCEEEEEEEEECC
T ss_conf 467744----99953894253213-------7-3--3--------7854999997586137999999788
No 10
>1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} SCOP: a.102.3.2 b.1.18.2 b.24.1.1 b.30.5.2 PDB: 1i8q_A* 1lxm_A*
Probab=1.00 E-value=1 Score=27.68 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=33.4
Q ss_pred CCCCEEEEEECCCEEEEECCCCEEEEEEEECEEEEEEECC
Q ss_conf 9985499992873699956843599996442599999565
Q 000256 121 PSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTR 160 (1776)
Q Consensus 121 Ps~~y~~~~~n~~Va~id~~~~~vtA~~lG~T~V~l~d~n 160 (1776)
-.++|.|++.|+.||++++ |+++|++.|.|.|.+.|+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~--g~~~~~~~g~~~~~~~~~~ 63 (814)
T 1f1s_A 26 NKADYQYTLTNPSLGKIVG--GILYPNATGSTTVKISDKS 63 (814)
T ss_dssp SSTTSEEEESSGGGEEEET--TEEEECSCEEEEEEEECTT
T ss_pred CCCCEEEEECCCCEEEEEC--CEEEEECCCEEEEEEECCC
T ss_conf 5686379964883589727--6788604864899998689
Done!