BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000257
(1774 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin
A- Sensitizing Mutations
pdb|1S9D|E Chain E, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 187 bits (475), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 124/193 (64%), Gaps = 2/193 (1%)
Query: 583 KAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLG 642
K M +FN P KG+++L+ N+L+ N P +A+FL L+K IGDYLG
Sbjct: 8 KTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLG 67
Query: 643 QHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNP 702
+ EE +AV+HA+VD +F+ + A+R+ L FRLPGEAQKIDR+ME FA+RYC NP
Sbjct: 68 EREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLXNP 127
Query: 703 GLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMN-AVNDAEECASTELLEEIY 761
G+F++ DT YVL+YSVI+LNTD HNP V KM FV MN +N+ + ELL +Y
Sbjct: 128 GVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPE-ELLRNLY 186
Query: 762 DSIVKEEIKMKDD 774
DSI E K+ +D
Sbjct: 187 DSIRNEPFKIPED 199
>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|F Chain F, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 124/193 (64%), Gaps = 2/193 (1%)
Query: 583 KAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLG 642
K M +FN P KG+++L+ N+L+ N P +A+FL L+K IGDYLG
Sbjct: 8 KTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLG 67
Query: 643 QHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNP 702
+ EE +AV+HA+VD +F+ + A+R+ L FRLPGEAQKIDR+ME FA+RYC NP
Sbjct: 68 EREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNP 127
Query: 703 GLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMN-AVNDAEECASTELLEEIY 761
G+F++ DT YVL+YSVI+LNTD HNP V KM FV MN +N+ + ELL +Y
Sbjct: 128 GVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPE-ELLRNLY 186
Query: 762 DSIVKEEIKMKDD 774
DSI E K+ +D
Sbjct: 187 DSIRNEPFKIPED 199
>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
Length = 203
Score = 184 bits (467), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/193 (47%), Positives = 124/193 (64%), Gaps = 2/193 (1%)
Query: 583 KAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLG 642
K M +FN P KG+++L+ N+L+ N P +A+FL L+K IGDYLG
Sbjct: 8 KTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLG 67
Query: 643 QHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNP 702
+ EE +AV+HA+VD +F+ + A+R+ L FRLPG+AQKIDR+ME FA+RYC NP
Sbjct: 68 EREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNP 127
Query: 703 GLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMN-AVNDAEECASTELLEEIY 761
G+F++ DT YVL+YSVI+LNTD HNP V KM FV MN +N+ + ELL +Y
Sbjct: 128 GVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPE-ELLRNLY 186
Query: 762 DSIVKEEIKMKDD 774
DSI E K+ +D
Sbjct: 187 DSIRNEPFKIPED 199
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
Length = 211
Score = 184 bits (466), Expect = 5e-46, Method: Composition-based stats.
Identities = 94/196 (47%), Positives = 128/196 (65%), Gaps = 4/196 (2%)
Query: 581 FEKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDY 640
FE K K +E I FN+KP +G++YL ++ P +AQFL LD +G++
Sbjct: 12 FEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEF 71
Query: 641 LGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCAD 700
LG +++F VM+AYVD FSG F +A+R L+GFRLPGEAQKIDR+MEKFA RY
Sbjct: 72 LGDNDKFNKEVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLEC 131
Query: 701 NPG--LFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMN-AVNDAEECASTELL 757
N G LF +ADTAYVLAYS+I+L TD H+P V KMTK +++MN +ND+++ E L
Sbjct: 132 NQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPE-EYL 190
Query: 758 EEIYDSIVKEEIKMKD 773
IY+ I ++I MK+
Sbjct: 191 SAIYNEIAGKKISMKE 206
>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno
Length = 195
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 120/190 (63%), Gaps = 2/190 (1%)
Query: 583 KAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLG 642
K M +FN P KG+++L+ N+L+ N P +A+FL L+K IGDYLG
Sbjct: 6 KTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLG 65
Query: 643 QHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNP 702
+ EE +AV+HA+VD +F+ + A+R+ L FRLPGEAQKIDR+ME FA+RYC NP
Sbjct: 66 EREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNP 125
Query: 703 GLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMN-AVNDAEECASTELLEEIY 761
G+F++ DT YVL+++VI+LNT HNP V K FV MN +N+ + ELL +Y
Sbjct: 126 GVFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPE-ELLRNLY 184
Query: 762 DSIVKEEIKM 771
DSI E K+
Sbjct: 185 DSIRNEPFKI 194
>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
pdb|4A4P|B Chain B, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
Length = 192
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 116/177 (65%), Gaps = 2/177 (1%)
Query: 596 SEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAY 655
+FN P KG+++LI N L+ N +AQFL L+K IGDYLG+ +EF + V+HA+
Sbjct: 15 KKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLHAF 74
Query: 656 VDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLA 715
V+ +F+ + A+R+ L FRLPGEAQKIDR+ME FA+RYC N G+F++ DT YVL+
Sbjct: 75 VELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYVLS 134
Query: 716 YSVILLNTDAHNPMVWPKMTKSDFVRMN-AVNDAEECASTELLEEIYDSIVKEEIKM 771
+++I+LNT HNP V K T F+ MN +ND + ELL +Y+SI E K+
Sbjct: 135 FAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPE-ELLRNLYESIKNEPFKI 190
>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average
Structure
Length = 200
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 116/177 (65%), Gaps = 2/177 (1%)
Query: 596 SEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAY 655
+FN P KG+++LI N L+ N +AQFL L+K IGDYLG+ +EF + V+HA+
Sbjct: 15 KKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLHAF 74
Query: 656 VDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLA 715
V+ +F+ + A+R+ L FRLPGEAQKIDR+ME FA+RYC N G+F++ DT YVL+
Sbjct: 75 VELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYVLS 134
Query: 716 YSVILLNTDAHNPMVWPKMTKSDFVRMN-AVNDAEECASTELLEEIYDSIVKEEIKM 771
+++I+LNT HNP V K T F+ MN +ND + ELL +Y+SI E K+
Sbjct: 135 FAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPE-ELLRNLYESIKNEPFKI 190
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 166 bits (421), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 118/179 (65%), Gaps = 2/179 (1%)
Query: 597 EFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYV 656
+FN P KG+++LI N L+ + P VAQFL L+K +IGDYLG+ ++F + V+ A+V
Sbjct: 24 KFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFV 83
Query: 657 DSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAY 716
+ +F+ + A+R+ L FRLPGEAQKIDR+ME FA RYC NPG+F++ DT YVL++
Sbjct: 84 ELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSF 143
Query: 717 SVILLNTDAHNPMVWPKMTKSDFVRMN-AVNDAEECASTELLEEIYDSIVKEEIKMKDD 774
++I+LNT HN V K T F+ MN +N+ + ELL +Y+SI E K+ +D
Sbjct: 144 AIIMLNTSLHNHNVRDKPTAERFITMNRGINEGGDLPE-ELLRNLYESIKNEPFKIPED 201
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 114/179 (63%), Gaps = 2/179 (1%)
Query: 597 EFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYV 656
+FN P KG+++LI N L+ + P VAQFL L+K +IGDYLG+ ++F + V+ A+V
Sbjct: 24 KFNXDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFV 83
Query: 657 DSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAY 716
+ +F+ + A+R+ L FRLPGEAQKIDR E FA RYC NPG+F++ DT YVL++
Sbjct: 84 ELHEFADLNLVQALRQFLWSFRLPGEAQKIDRXXEAFASRYCLCNPGVFQSTDTCYVLSF 143
Query: 717 SVILLNTDAHNPMVWPKMTKSDFVRMN-AVNDAEECASTELLEEIYDSIVKEEIKMKDD 774
++I LNT HN V K T F+ N +N+ + ELL +Y+SI E K+ +D
Sbjct: 144 AIIXLNTSLHNHNVRDKPTAERFITXNRGINEGGDLPE-ELLRNLYESIKNEPFKIPED 201
>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2
(Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human).
Northeast Structural Genomics Consortium Target Id
Hr5562a
pdb|3SWV|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2 (Brefeldin
A-Inhibited Gep 2) From Homo Sapiens (Human), Northeast
Structural Genomics Consortium Target Id Hr5562a
Length = 202
Score = 159 bits (402), Expect = 1e-38, Method: Composition-based stats.
Identities = 86/198 (43%), Positives = 118/198 (59%), Gaps = 4/198 (2%)
Query: 579 DNFEKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIG 638
+ FE K K +E I FN+KP +G+++L + +AQFL LD +G
Sbjct: 1 EQFEVIKQQKEIIEHGIELFNKKPKRGIQFLQEQGXLGTSVEDIAQFLHQEERLDSTQVG 60
Query: 639 DYLGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYC 698
D+LG F V +AYVD + F +F +A+R L+GFRLPGEAQKIDR+ EKFA RY
Sbjct: 61 DFLGDSARFNKEVXYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLXEKFAARYI 120
Query: 699 ADNPG--LFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMN-AVNDAEECASTE 755
N G LF +ADTAYVLAYS+I L TD H+P V K TK +++ N +ND+++ E
Sbjct: 121 ECNQGQTLFASADTAYVLAYSIIXLTTDLHSPQVKNKXTKEQYIKXNRGINDSKDLPE-E 179
Query: 756 LLEEIYDSIVKEEIKMKD 773
L IY+ I ++I K+
Sbjct: 180 YLSSIYEEIEGKKIAXKE 197
>pdb|1XSZ|A Chain A, The Structure Of Ralf
pdb|1XSZ|B Chain B, The Structure Of Ralf
Length = 356
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 582 EKAKAHKSTMEAAISEFNRKPVKGV----EYLISNKLVDNDPTSVAQFL-RNAANLDKAM 636
E KA + +EA FN KP G+ E K+ N+ +A+F + NLD
Sbjct: 6 EIEKAQREIIEA----FNAKPKNGINKIKEICEQYKISPNE--EIAEFFHQQRKNLDLEA 59
Query: 637 IGDYLGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAER 696
+GDYL E V+ A+ M F+G F +R LK F+LPGEAQKIDR+++ F+
Sbjct: 60 VGDYLSSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGA 119
Query: 697 YCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWP---KMTKSDFVR-MNAVNDAEECA 752
Y NP + NAD AY+LA+ I+LNTD HNP + P KMT R + N+ +
Sbjct: 120 YFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSI-PEKNKMTVDGLKRNLRGGNNGGDF- 177
Query: 753 STELLEEIYDSI 764
+ LEE+Y I
Sbjct: 178 DAKFLEELYSEI 189
>pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf
Length = 203
Score = 104 bits (260), Expect = 4e-22, Method: Composition-based stats.
Identities = 69/190 (36%), Positives = 99/190 (52%), Gaps = 13/190 (6%)
Query: 582 EKAKAHKSTMEAAISEFNRKPVKGVEYL--ISNKLVDNDPTSVAQFL-RNAANLDKAMIG 638
E KA + +EA FN KP G+ + I + + +A+F + NLD +G
Sbjct: 6 EIEKAQREIIEA----FNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVG 61
Query: 639 DYLGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYC 698
DYL E V+ A+ F+G F +R LK F+LPGEAQKIDR+++ F+ Y
Sbjct: 62 DYLSSPEAENQQVLKAFTSQXNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYF 121
Query: 699 ADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKS--DFVRMN--AVNDAEECAST 754
NP + NAD AY+LA+ I LNTD HNP + P+ K D ++ N N+ +
Sbjct: 122 QQNPDVVSNADAAYLLAFQTIXLNTDLHNPSI-PEKNKXTVDGLKRNLRGGNNGGD-FDA 179
Query: 755 ELLEEIYDSI 764
+ LEE+Y I
Sbjct: 180 KFLEELYSEI 189
>pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
Length = 221
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 109/220 (49%), Gaps = 39/220 (17%)
Query: 584 AKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPT-SVAQFL-RNAANLDKAMIGDYL 641
A K+ + FN K KG++ LI +D+D +A FL N L+K IG L
Sbjct: 5 ASDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLL 64
Query: 642 GQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADN 701
++ +++ ++D F G++ D AIR LL FRLPGE+Q+I+RI+E F+ +Y AD
Sbjct: 65 CDPKK--TSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQ 122
Query: 702 PG-------------------------LFKNADTAYVLAYSVILLNTDAHNPMVWPKMTK 736
+ +AD+ +VL+YS+I+LNTD+HNP V MT
Sbjct: 123 SNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTF 182
Query: 737 SDFVRMNAVNDAEECASTE-----LLEEIYDSIVKEEIKM 771
D+ N+ C + + L +IY SI +EI M
Sbjct: 183 DDY-----SNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVM 217
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
pdb|1KU1|B Chain B, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
Length = 230
Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 110/199 (55%), Gaps = 29/199 (14%)
Query: 598 FNRKPVKGVEYLISNKLVDNDP-TSVAQFLRNAAN-LDKAMIGDYLGQHEEFPVAVMHAY 655
FN KP KG+ LI + +D +A+FL N N ++K IG L ++ V++++ Y
Sbjct: 34 FNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDK--VSLLNEY 91
Query: 656 VDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYC----------ADNP--- 702
+ FSG++ D AIR LL FRLPGE+Q+I+RI+E F+ YC +DN
Sbjct: 92 IRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDD 151
Query: 703 --GLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNAVNDAEECASTE----- 755
+ +AD+ ++L+YS+I+LNTD HNP V M+ D+ + + C + +
Sbjct: 152 ISTVQPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDY-----SGNLKGCCNHKDFPFW 206
Query: 756 LLEEIYDSIVKEEIKMKDD 774
L+ +Y SI +EI M ++
Sbjct: 207 YLDRVYCSIRDKEIVMPEE 225
>pdb|1GCZ|A Chain A, Macrophage Migration Inhibitory Factor (Mif) Complexed With
Inhibitor.
pdb|1GCZ|B Chain B, Macrophage Migration Inhibitory Factor (Mif) Complexed With
Inhibitor.
pdb|1GCZ|C Chain C, Macrophage Migration Inhibitory Factor (Mif) Complexed With
Inhibitor.
pdb|1GD0|A Chain A, Human Macrophage Migration Inhibitory Factor (Mif)
pdb|1GD0|B Chain B, Human Macrophage Migration Inhibitory Factor (Mif)
pdb|1GD0|C Chain C, Human Macrophage Migration Inhibitory Factor (Mif)
pdb|3JSF|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Hydroxyquinoline Inhibitor 638 At 1.93a
Resolution
pdb|3JSF|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Hydroxyquinoline Inhibitor 638 At 1.93a
Resolution
pdb|3JSF|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Hydroxyquinoline Inhibitor 638 At 1.93a
Resolution
pdb|3JSG|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor
Hydroxyquinoline Inhibitor 707 At 1.58a Resolution
pdb|3JSG|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory Factor
Hydroxyquinoline Inhibitor 707 At 1.58a Resolution
pdb|3JSG|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory Factor
Hydroxyquinoline Inhibitor 707 At 1.58a Resolution
pdb|3JTU|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor
Hydroxyquinoline Inhibitor 708 At 1.86a Resolution
pdb|3JTU|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory Factor
Hydroxyquinoline Inhibitor 708 At 1.86a Resolution
pdb|3JTU|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory Factor
Hydroxyquinoline Inhibitor 708 At 1.86a Resolution
pdb|3L5P|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Imidazopyridazinol Inhibitor At 1.80a
Resolution
pdb|3L5P|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Imidazopyridazinol Inhibitor At 1.80a
Resolution
pdb|3L5P|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Imidazopyridazinol Inhibitor At 1.80a
Resolution
pdb|3L5R|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Phenylchromenone Inhibitor At 1.94a Resolution
pdb|3L5R|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Phenylchromenone Inhibitor At 1.94a Resolution
pdb|3L5R|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Phenylchromenone Inhibitor At 1.94a Resolution
pdb|3L5S|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Imidazopyrimidinylphenyl Inhibitor At 1.86a
Resolution
pdb|3L5S|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Imidazopyrimidinylphenyl Inhibitor At 1.86a
Resolution
pdb|3L5S|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Imidazopyrimidinylphenyl Inhibitor At 1.86a
Resolution
pdb|3L5T|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Thiophenepiperazinylquinolinone Inhibitor At
1.86a Resolution
pdb|3L5T|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Thiophenepiperazinylquinolinone Inhibitor At
1.86a Resolution
pdb|3L5T|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Thiophenepiperazinylquinolinone Inhibitor At
1.86a Resolution
pdb|3L5U|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Benzothiazole Inhibitor At 1.90a Resolution
pdb|3L5U|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Benzothiazole Inhibitor At 1.90a Resolution
pdb|3L5U|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Benzothiazole Inhibitor At 1.90a Resolution
pdb|3L5V|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Glycerol At 1.70a Resolution
pdb|3L5V|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Glycerol At 1.70a Resolution
pdb|3L5V|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory Factor
(Mif) With Glycerol At 1.70a Resolution
Length = 122
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 1007 LCGVSAEELRQTPARVFSLQKLVEISYYNMARIRMVW 1043
LCG+ AE LR +P RV+ I+YY+M + W
Sbjct: 79 LCGLLAERLRISPDRVY-------INYYDMNAANVGW 108
>pdb|3HOF|A Chain A, Structure Of Macrophage Migration Inhibitory Factor (Mif)
With Caffeic Acid At 1.9a Resolution
pdb|3HOF|B Chain B, Structure Of Macrophage Migration Inhibitory Factor (Mif)
With Caffeic Acid At 1.9a Resolution
pdb|3HOF|C Chain C, Structure Of Macrophage Migration Inhibitory Factor (Mif)
With Caffeic Acid At 1.9a Resolution
Length = 123
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 1007 LCGVSAEELRQTPARVFSLQKLVEISYYNMARIRMVW 1043
LCG+ AE LR +P RV+ I+YY+M + W
Sbjct: 80 LCGLLAERLRISPDRVY-------INYYDMNAANVGW 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,849,545
Number of Sequences: 62578
Number of extensions: 1829612
Number of successful extensions: 4293
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4264
Number of HSP's gapped (non-prelim): 26
length of query: 1774
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1661
effective length of database: 7,902,023
effective search space: 13125260203
effective search space used: 13125260203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)