Query 000257
Match_columns 1774
No_of_seqs 444 out of 1154
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 01:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03076 ARF guanine nucleotid 100.0 1E-307 3E-312 3040.0 151.1 1599 2-1774 9-1777(1780)
2 KOG0929 Guanine nucleotide exc 100.0 8E-262 2E-266 2491.2 95.1 1473 5-1767 1-1512(1514)
3 KOG0928 Pattern-formation prot 100.0 1E-116 3E-121 1115.5 89.4 1184 86-1368 42-1326(1386)
4 COG5307 SEC7 domain proteins [ 100.0 5.9E-86 1.3E-90 853.0 35.0 932 351-1391 2-1023(1024)
5 KOG1848 Uncharacterized conser 100.0 8.4E-65 1.8E-69 638.7 58.2 988 5-1369 9-1133(1610)
6 KOG0930 Guanine nucleotide exc 100.0 7.2E-50 1.6E-54 435.6 14.8 194 583-776 57-250 (395)
7 cd00171 Sec7 Sec7 domain; Doma 100.0 2.3E-47 5.1E-52 420.4 20.9 183 587-769 1-185 (185)
8 PF01369 Sec7: Sec7 domain; I 100.0 5.1E-47 1.1E-51 420.5 18.9 185 585-769 2-190 (190)
9 smart00222 Sec7 Sec7 domain. D 100.0 1.4E-46 3.1E-51 415.4 21.0 183 587-769 2-187 (187)
10 KOG0931 Predicted guanine nucl 100.0 8.5E-45 1.8E-49 416.7 14.0 190 586-775 196-391 (627)
11 KOG1846 Uncharacterized conser 100.0 7.2E-30 1.6E-34 307.7 48.5 680 866-1634 679-1561(1777)
12 PF12783 Sec7_N: Guanine nucle 100.0 1.2E-31 2.6E-36 292.9 16.2 155 340-494 2-168 (168)
13 KOG0932 Guanine nucleotide exc 99.9 5.1E-26 1.1E-30 267.9 13.9 156 619-774 307-462 (774)
14 PF09324 DUF1981: Domain of un 99.8 1.2E-21 2.5E-26 190.1 5.2 86 1078-1163 1-86 (86)
15 PLN03076 ARF guanine nucleotid 96.5 0.72 1.5E-05 66.9 29.6 359 892-1294 1086-1513(1780)
16 KOG2171 Karyopherin (importin) 94.6 8.2 0.00018 53.0 26.5 248 1097-1390 4-256 (1075)
17 PF01602 Adaptin_N: Adaptin N 94.2 16 0.00035 47.4 28.4 318 1020-1392 53-388 (526)
18 KOG2171 Karyopherin (importin) 93.7 21 0.00045 49.4 27.7 277 1058-1373 46-343 (1075)
19 PF01602 Adaptin_N: Adaptin N 91.4 56 0.0012 42.5 36.1 296 998-1370 188-485 (526)
20 KOG2023 Nuclear transport rece 89.5 59 0.0013 42.8 23.4 323 1047-1396 126-532 (885)
21 KOG1824 TATA-binding protein-i 89.1 46 0.001 45.3 22.7 174 1187-1391 528-703 (1233)
22 KOG1241 Karyopherin (importin) 88.6 34 0.00074 45.5 20.9 256 1058-1362 10-282 (859)
23 KOG1848 Uncharacterized conser 87.5 22 0.00047 50.0 18.9 49 910-958 587-635 (1610)
24 PF12348 CLASP_N: CLASP N term 85.6 31 0.00067 39.7 17.3 144 1185-1369 57-207 (228)
25 PF12348 CLASP_N: CLASP N term 84.4 62 0.0013 37.2 19.0 180 1021-1212 24-210 (228)
26 PF11864 DUF3384: Domain of un 82.1 1.2E+02 0.0027 39.2 22.1 141 1241-1391 302-445 (464)
27 KOG0166 Karyopherin (importin) 79.6 1E+02 0.0023 40.0 19.5 274 1053-1369 156-437 (514)
28 PF12717 Cnd1: non-SMC mitotic 79.1 18 0.00039 40.5 11.6 110 1062-1185 1-112 (178)
29 KOG1248 Uncharacterized conser 78.5 3.1E+02 0.0068 38.8 27.8 259 1094-1395 96-383 (1176)
30 PF10508 Proteasom_PSMB: Prote 77.1 2.3E+02 0.005 37.2 22.5 260 1062-1365 51-316 (503)
31 PF14500 MMS19_N: Dos2-interac 76.2 56 0.0012 39.1 15.1 209 1048-1289 41-257 (262)
32 PF12719 Cnd3: Nuclear condens 76.0 29 0.00063 42.1 13.1 65 1253-1328 77-144 (298)
33 KOG1077 Vesicle coat complex A 76.0 77 0.0017 42.1 16.7 62 1058-1125 338-399 (938)
34 PF11864 DUF3384: Domain of un 74.8 2.7E+02 0.0058 36.2 24.0 202 1150-1395 148-358 (464)
35 KOG2023 Nuclear transport rece 73.9 2.6E+02 0.0057 37.2 20.5 102 1048-1158 173-278 (885)
36 PF10508 Proteasom_PSMB: Prote 71.6 3.3E+02 0.0071 35.8 22.4 197 1053-1273 164-370 (503)
37 KOG0929 Guanine nucleotide exc 69.1 2E+02 0.0044 41.9 19.7 231 1037-1293 1063-1321(1514)
38 KOG2956 CLIP-associating prote 68.5 94 0.002 39.7 14.7 144 1242-1400 289-444 (516)
39 PF03378 CAS_CSE1: CAS/CSE pro 68.1 3.6E+02 0.0078 34.8 22.5 98 1047-1146 69-169 (435)
40 PF12717 Cnd1: non-SMC mitotic 67.3 29 0.00063 38.8 9.6 93 1253-1369 1-93 (178)
41 KOG1824 TATA-binding protein-i 64.7 5.6E+02 0.012 35.8 23.8 168 1102-1351 577-750 (1233)
42 PF11640 TAN: Telomere-length 63.2 1.2E+02 0.0027 33.1 13.3 130 1248-1380 12-154 (155)
43 PF08767 CRM1_C: CRM1 C termin 62.9 3.5E+02 0.0076 33.4 18.5 162 1076-1252 50-226 (319)
44 cd00020 ARM Armadillo/beta-cat 61.5 65 0.0014 32.2 10.2 110 1242-1367 9-119 (120)
45 PF12755 Vac14_Fab1_bd: Vacuol 60.2 1.4E+02 0.003 30.3 11.9 94 1256-1368 2-96 (97)
46 KOG2956 CLIP-associating prote 60.0 4.8E+02 0.01 33.7 18.5 196 1049-1277 287-486 (516)
47 cd00020 ARM Armadillo/beta-cat 59.6 22 0.00047 35.8 6.3 71 1052-1126 10-80 (120)
48 KOG1242 Protein containing ada 55.0 6.5E+02 0.014 33.5 25.3 215 1105-1369 106-325 (569)
49 PF08427 DUF1741: Domain of un 53.1 4.6E+02 0.0099 31.2 17.1 176 1194-1388 32-227 (237)
50 PF02985 HEAT: HEAT repeat; I 52.9 22 0.00049 28.0 3.9 28 1242-1269 2-29 (31)
51 PF04510 DUF577: Family of unk 51.7 2.7E+02 0.0059 31.3 13.2 152 1178-1369 7-165 (174)
52 PF08767 CRM1_C: CRM1 C termin 50.9 93 0.002 38.3 10.8 126 1237-1372 68-198 (319)
53 PF12755 Vac14_Fab1_bd: Vacuol 49.4 82 0.0018 32.0 8.3 73 1091-1165 24-96 (97)
54 PF12783 Sec7_N: Guanine nucle 45.9 3.5E+02 0.0077 29.8 13.5 82 1254-1346 36-121 (168)
55 PTZ00429 beta-adaptin; Provisi 45.4 1E+03 0.022 33.0 24.4 265 1050-1388 257-526 (746)
56 PRK09687 putative lyase; Provi 43.7 2.3E+02 0.0049 34.3 12.4 161 1053-1266 58-218 (280)
57 KOG1062 Vesicle coat complex A 43.6 8.6E+02 0.019 33.5 17.9 66 1100-1165 299-379 (866)
58 KOG0212 Uncharacterized conser 43.2 4.1E+02 0.0089 35.0 14.5 182 1154-1369 18-238 (675)
59 KOG1060 Vesicle coat complex A 39.3 1.2E+03 0.027 32.1 19.0 222 1060-1354 298-519 (968)
60 KOG0889 Histone acetyltransfer 37.5 2.3E+03 0.049 34.8 25.1 220 979-1209 543-797 (3550)
61 PF12719 Cnd3: Nuclear condens 36.8 3.6E+02 0.0077 32.8 12.8 79 1048-1135 26-104 (298)
62 cd03568 VHS_STAM VHS domain fa 36.6 1.6E+02 0.0034 32.2 8.6 61 1059-1123 47-109 (144)
63 KOG1991 Nuclear transport rece 33.2 1.6E+03 0.035 31.8 24.2 150 1109-1276 103-279 (1010)
64 PF12460 MMS19_C: RNAPII trans 30.2 1.3E+03 0.027 29.6 31.0 133 1242-1388 273-413 (415)
65 PF04826 Arm_2: Armadillo-like 28.1 2.7E+02 0.0058 33.3 9.4 88 391-483 84-174 (254)
66 PF13513 HEAT_EZ: HEAT-like re 27.7 92 0.002 27.5 4.2 52 1315-1366 4-55 (55)
67 KOG2032 Uncharacterized conser 27.4 1.5E+03 0.033 29.6 17.5 81 1192-1296 313-397 (533)
68 KOG1967 DNA repair/transcripti 26.9 3.6E+02 0.0079 37.3 10.9 162 1110-1293 142-308 (1030)
69 KOG0211 Protein phosphatase 2A 26.8 1.8E+03 0.039 30.8 17.6 167 1064-1269 494-664 (759)
70 KOG1949 Uncharacterized conser 25.5 1.4E+03 0.031 31.1 15.3 72 1251-1334 185-256 (1005)
71 KOG4535 HEAT and armadillo rep 25.3 1.2E+03 0.026 30.3 14.2 241 1106-1382 58-338 (728)
72 PF13646 HEAT_2: HEAT repeats; 24.7 1.4E+02 0.0031 28.5 5.4 70 1059-1153 10-79 (88)
73 KOG1242 Protein containing ada 24.5 8.3E+02 0.018 32.5 13.3 110 1132-1266 212-321 (569)
74 PRK09687 putative lyase; Provi 24.2 9.9E+02 0.021 28.9 13.4 160 1052-1267 26-186 (280)
75 PF08623 TIP120: TATA-binding 23.9 5.8E+02 0.013 28.8 10.3 118 1251-1388 38-168 (169)
76 PF09324 DUF1981: Domain of un 23.2 5.2E+02 0.011 25.6 8.9 54 1312-1365 32-85 (86)
77 KOG0946 ER-Golgi vesicle-tethe 22.8 2.2E+03 0.048 29.9 19.7 216 1105-1351 33-270 (970)
78 KOG0392 SNF2 family DNA-depend 22.3 1.2E+03 0.025 34.1 14.3 46 1240-1285 77-122 (1549)
79 PF02985 HEAT: HEAT repeat; I 22.2 1.5E+02 0.0033 23.3 4.0 27 1051-1077 2-28 (31)
80 PF10274 ParcG: Parkin co-regu 22.2 77 0.0017 35.9 3.2 34 113-146 80-113 (183)
81 PF03224 V-ATPase_H_N: V-ATPas 20.6 1.4E+03 0.029 28.0 13.9 177 1021-1207 74-268 (312)
82 cd03561 VHS VHS domain family; 20.4 3.4E+02 0.0073 29.0 7.6 64 1060-1127 48-115 (133)
No 1
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=1.2e-307 Score=3040.04 Aligned_cols=1599 Identities=39% Similarity=0.631 Sum_probs=1297.2
Q ss_pred CcccccHHHHHHHHhcccCCCChhHHHHHHHHHHHhhhcCCCCCCccccccccCCCCCCccccccccccccccccCcccc
Q 000257 2 AAGGFVSRAFESMLKECSGKKFPDLQKAIQTYLDNAKEVKPPASSETSEATASAGDGSSIETEAGAAEKGTEAVQLPAEQ 81 (1774)
Q Consensus 2 ~~~~~~~~ale~i~~~~~~kk~~~l~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1774)
+.++||++|||+|+++|+||||++|++||++||+.+|+...+..++ +.++..+. +
T Consensus 9 ~~~~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~--------~~~~~~~~-----------------~ 63 (1780)
T PLN03076 9 RLGKVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPST--------SSAAADSA-----------------S 63 (1780)
T ss_pred hhhHHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhccccccccc--------cccccccc-----------------c
Confidence 3578999999999999999999999999999999999766432110 00000000 0
Q ss_pred ccccCcccccchhHHHHHhhhCCCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHHhhcCcccCCCCCCCCCCcchH
Q 000257 82 TEHIGKTVGVSGSVATALANAGHTLEAADAELVLNPLRLAIETKNLKLLESALDCLHKLIAYDHLEGDPGLNGGKNAPLF 161 (1774)
Q Consensus 82 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~d~~~i~~Pf~LAc~sks~ki~~~ALdcLqKLis~~~i~~~~~~~~~~~~~li 161 (1774)
..+.++|+.+++. ..++.++|+.||.||++||+||++||+.+|||||||||+||||.|+.++.+++..++|
T Consensus 64 ~~~~~~~~~~~~~---------~~~~~~~~~~i~~pl~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~li 134 (1780)
T PLN03076 64 ASSLPGPLHDGGS---------IEYSLAESELILSPLINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLL 134 (1780)
T ss_pred ccccccccccccc---------ccccccCHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHH
Confidence 0011334333221 1234569999999999999999999999999999999999999997766555667899
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHhccccccccchhHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHHHhc
Q 000257 162 TDILNMVCGCVDNSSSDSTILQVLKVLLTAVASAKFRVHGEPLLGVIRVCYNISLNSKSPINQATSKAMLTQMVSIVVRR 241 (1774)
Q Consensus 162 ~~iv~tIc~c~~~~~~d~v~LQIlkaLlt~V~s~~~~vhg~~LlkaVrtcyni~l~Sks~vnq~tA~aTLtQmv~~VF~R 241 (1774)
+++|++||+|+++ ++|.|||||||+|+++|+++++.|||++||+|||||||||+.||+++||+||||||||||++||+|
T Consensus 135 d~~i~~Ic~c~~~-~de~iqLqilk~Ll~~v~s~~~~vhg~~LLkaVR~cyni~l~Sks~~nq~tA~atLtQmv~~VF~R 213 (1780)
T PLN03076 135 AKLIESVCKCHDL-GDEGIELLVLKTLLSAVTSTSLRIHGDCLLQAVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRR 213 (1780)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHHHHHcCCCceeEHHHHHHHHHHhheeeecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999975 456699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCC--CCCccCCCCcccccCCCCCCCCc------------------cccc-ccccCC-CCCchh
Q 000257 242 MENDQVSTLPTSSGHTETS--SADDASRMPEETTLGDKNKDGMT------------------LGDA-LTQAKD-TPIASV 299 (1774)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~-~~~~~~-~~~~~~ 299 (1774)
|+.+.......+....+.. ...+.+..+.....+....+.+. ..+. ...... ....+.
T Consensus 214 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1780)
T PLN03076 214 MEADSSTVPIQPIVVAELMEPAEKSDSDTSMTQFVQGFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPA 293 (1780)
T ss_pred hhcccccccccccccccccccccccccccchhhhhhhhhhhhccccccccCcccccccccccccccccccccccCCCCcc
Confidence 9876532211111000000 00000000000000000000000 0000 000000 000000
Q ss_pred hhhhccCCC-Cccchhhh-hhhhhcc---cc--cccc-cccCCcccccChhhhHHHHHHHHHHhccCCCCCc-----hhh
Q 000257 300 EELHNLAGG-ADIKGLEA-VLDKAVH---LE--DGKK-ITRGIDLESMSIGQQDALLVFRTLCKMGMKEDSD-----EVT 366 (1774)
Q Consensus 300 ~~~~~~~~~-~~~~~~~~-~~~~~~~---~~--~~~~-~~~~~~~~~~~~~~kDa~lvFr~LC~Ls~k~~~~-----~~~ 366 (1774)
+.+++.... .+....+. +...+.. .+ ++.. ...+.++...++++||||+|||+|||||+|+.+. .+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~ 373 (1780)
T PLN03076 294 DLLDSTDKDMLDAKYWEISMYKSALEGRKGELADGEVEKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQL 373 (1780)
T ss_pred hhhcccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHH
Confidence 000000000 00000000 0000000 00 0000 0000111123679999999999999999998763 368
Q ss_pred hhhhHHHHHHHHHHHhcCCccccCChhhHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 000257 367 TKTRILSLELLQGLLEGVSHSFTKNFHFIDSIKAYLSYALLRASVSQSSVIFQYATGIFSVLLLRFRESLKGEIGVFFPL 446 (1774)
Q Consensus 367 ~rsk~lsLeLl~~iL~~~~~~f~~~~~f~~~ik~~Lc~~Llrn~~S~~~~vF~lsl~if~~Ll~~~r~~Lk~Eievfl~~ 446 (1774)
+|+|++|||||+++|+++|++|.+|+.|+++||+|||.+|+||++|++++||+++|+|||+|+.+||.+||.||||||++
T Consensus 374 ~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~ 453 (1780)
T PLN03076 374 MRGKILALELLKILLENAGAVFRTSDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPM 453 (1780)
T ss_pred HHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCC---ChhhHHHHHHHHHHHhcCchHHHHHHHhcCCCCCCccHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 000257 447 IVLRSLDGS---DNNQKTSVLRMIDKVCKDPQMLVDVYVNYDCDLEAPNLFERMVTTLSKIAQGTQNTDPNSVMVSQTTT 523 (1774)
Q Consensus 447 i~l~~Le~s---~~~qK~~~Le~l~~lc~dp~~lvdiy~NYDCd~~~~nife~lv~~Lsk~a~~~~~~~~~~~~~~~~~~ 523 (1774)
|++++|++. +++||+++|++|.+||+||++++|||+|||||.+++||||+||+.|+|+|+|.++....+..++|++.
T Consensus 454 I~l~ile~~~~~s~~qK~~~L~~L~~lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~ 533 (1780)
T PLN03076 454 IVLRVLENVAQPNFQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAA 533 (1780)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHH
Confidence 999999963 39999999999999999999999999999999999999999999999999986544333345678999
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhh--hh---hcccC---c-chhhhhh---cc---cc----ccccccCCCCchhHHHH
Q 000257 524 IKGSSLQCLVNVLKSLVEWERSRRE--TK---KKNEN---S-LSLAEEV---NA---KE----SVEIKSRDDVPDNFEKA 584 (1774)
Q Consensus 524 l~~~~l~~Lv~il~sl~~w~~~~~~--~~---~~~~~---~-~~~~~~~---~~---~~----~~~~~~~~d~p~~~e~~ 584 (1774)
+|..||+||++||+||++|.+.... .. +.... . ....... +. .+ ..+.....++|++|+++
T Consensus 534 lk~~aLecLv~il~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1780)
T PLN03076 534 MKLEAMKCLVAILRSMGDWMNKQLRLPDPASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQR 613 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhccccccccccccccccccccccccccccccccCCcHHHHHHH
Confidence 9999999999999999999875421 00 00000 0 0000000 00 00 01122234678899999
Q ss_pred HhhhHHHHHHHHHhhcChhhhHHHHHHCCCCCCChHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCCCC
Q 000257 585 KAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGM 664 (1774)
Q Consensus 585 k~~K~~~~~~i~~FN~~pkkGi~~L~~~g~i~~~p~~iA~fL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~ 664 (1774)
|++|..+++|+.+||+|||+||+||+++|+++++|++||+||++++||||++||||||++++++.+||++|++.|||+|+
T Consensus 614 k~~K~~l~~g~~~FN~~Pk~Gi~~L~~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~ 693 (1780)
T PLN03076 614 RAYKLELQEGISLFNRKPKKGIEFLINANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGM 693 (1780)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHhhcCCCCCCCCCCCCHhHHHhhhc
Q 000257 665 KFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNA 744 (1774)
Q Consensus 665 ~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np~~f~s~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~~n~ 744 (1774)
+||+|||.||++||||||+|+||||||+||+|||+|||+.|.++|++|+|+||+||||||+|||+||+|||+++|++|||
T Consensus 694 ~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~r 773 (1780)
T PLN03076 694 EFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNR 773 (1780)
T ss_pred CHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccHHHHHHHHHHhhcccccccchhhhhh-hccccccccccchhhhccccccccCccchhhhhHHHHHHHHHHH
Q 000257 745 VNDAEECASTELLEEIYDSIVKEEIKMKDDVAKSS-RQKQEGEERGGLVGILNLALPKQKSSTDTKSESEAIVKQTQAIF 823 (1774)
Q Consensus 745 ~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~l~ 823 (1774)
|+|+|+|+|+|||++||++|+++||+|++|+.... ++..+.....++..+++.. .|++..+.|+++++.++++++..+
T Consensus 774 gin~g~dlp~e~L~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~r~~~~e~~~~~s~~l~~~~~~~~ 852 (1780)
T PLN03076 774 GIDDGKDLPEEFMRSLYERISKNEIKMKEDDLVPQQKQSANSNRILGLDSILNIV-IRKRGEDSYMETSDDLIKHMQEQF 852 (1780)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCcccCcccccccccccccccchhhhhHHHHhHh-hHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999998863211 1111101111222233432 345556778899999999999888
Q ss_pred Hhc-CcccceEEecccccchHHHHHHhhhHHHHHHHhhhhcCCChhHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHh
Q 000257 824 RNQ-GVKRGVFYTSNRIELVRPMVEAVGWPLLAAFSVTMEEGENKPRVALCMEGFKAGIHITQVLGMDTMRYAFLTSLVR 902 (1774)
Q Consensus 824 k~~-~~~~~~f~~a~~~~~v~~mf~~~w~p~LaalS~~l~~~~d~~~i~~cLeGf~~~i~ia~~~~l~~~Rdafi~sL~k 902 (1774)
|.. ++..+.|+.+++.+|+||||+++|+|+|||||++|++++|++++.+||+||+.+|+|+|.|||+++||+||++|||
T Consensus 853 k~~~~~~~~~f~~a~~~~~~~~mfe~~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~k 932 (1780)
T PLN03076 853 KEKARKSESVYYAATDVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAK 932 (1780)
T ss_pred HHhhccccCceeecchHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 754 4456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCccchhhhhHHHHHHHHhhhccCCChhhhhHHHHHHHHHHhHHhhcC-----CCccc----------c-------
Q 000257 903 FTFLHAPKEMRSKNVEALRTLLALCDTEPDSLQDTWNAVLECVSRLEFIMST-----PAISA----------T------- 960 (1774)
Q Consensus 903 ft~L~~~~em~~KNv~alr~LL~lA~~~Gn~L~~SW~~IL~~isqLe~l~~~-----P~~~~----------~------- 960 (1774)
||.|++|.+|++||++|+|+||+||+++||+|++||++||+|||+||+++.. |+... +
T Consensus 933 fT~L~~~~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~ 1012 (1780)
T PLN03076 933 FTSLHSPADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPI 1012 (1780)
T ss_pred HcCCCChhhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999832 22100 0
Q ss_pred ------------------cccCCCc-----------cchhHHHH------HHHHhhCCchhhhhhcCCCCChhHHHHHHH
Q 000257 961 ------------------VMLGSNQ-----------ISKDAVVQ------SLKELAGKPAEQVFVNSVKLPSDSIVEFFN 1005 (1774)
Q Consensus 961 ------------------~~~~s~~-----------~s~~~~~~------sl~e~~~~~id~IF~~S~~Ls~eAiv~Fv~ 1005 (1774)
.++++.. ...+.+.. .+..+..+.+|+||++|.+|+++||++||+
T Consensus 1013 ~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~ 1092 (1780)
T PLN03076 1013 LPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVK 1092 (1780)
T ss_pred ccccccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHH
Confidence 0000000 00011100 011223457999999999999999999999
Q ss_pred HHHhhcHHhhhcC-CCccchHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 000257 1006 ALCGVSAEELRQT-PARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERA 1084 (1774)
Q Consensus 1006 ALc~vS~eEl~~s-~pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~e 1084 (1774)
|||+||++||+++ +||+|+|+||||||+|||+|||++|++||+++++||+++|||+|..||+||+|+||||+|||++++
T Consensus 1093 AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~e 1172 (1780)
T PLN03076 1093 ALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLERE 1172 (1780)
T ss_pred HHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchh
Confidence 9999999999874 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 000257 1085 ELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVI 1164 (1774)
Q Consensus 1085 EL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~ 1164 (1774)
|+.||+||++||+||+++|.++.+.+||++|++|+.|||++++++|+||||+||+||+.|+.++++.+|+.||+++++|+
T Consensus 1173 EL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~ 1252 (1780)
T PLN03076 1173 ELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKII 1252 (1780)
T ss_pred hhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhh---hhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCC-C-----C---C-C--C-cc-
Q 000257 1165 LEHFDQVV---GDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDL-K-----P---I-D--V-ET- 1227 (1774)
Q Consensus 1165 ~d~~~~l~---~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~-~-----~---~-~--~-~~- 1227 (1774)
++||+.++ .++|.|||+||.+|++|..++||||+||++||.|+++++++.+..... . + . . . +.
T Consensus 1253 ~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 1332 (1780)
T PLN03076 1253 REYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQES 1332 (1780)
T ss_pred HhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccc
Confidence 99999877 599999999999999999999999999999999999998764311000 0 0 0 0 0 00
Q ss_pred --cCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccc-
Q 000257 1228 --DATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLI- 1304 (1774)
Q Consensus 1228 --~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~- 1304 (1774)
....+....+|+|||++|+++++|+|+|||++||+|||++|..||+.|++++|+.||++||||||+.++...+....
T Consensus 1333 ~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~ 1412 (1780)
T PLN03076 1333 GEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGD 1412 (1780)
T ss_pred cccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 01233446899999999999999999999999999999999999999999999999999999999999865332111
Q ss_pred -------------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhC
Q 000257 1305 -------------SSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGG 1371 (1774)
Q Consensus 1305 -------------~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~~~ 1371 (1774)
.+.++|+.|||++||+++++||++||+.|++||++++.||.+||||+|++|||||++||++||.+||
T Consensus 1413 ~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1413 EPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 1347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHHHHHhhcCchhhhhhcccccchhccccccCCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCCC
Q 000257 1372 HQFSESDWDTLLKSIRDASYTTQPLELLNENLKNVTVVIRDSEVGAGEADNNQFGVSDNGKVSTLSSPTIGADGTPRNLN 1451 (1774)
Q Consensus 1372 ~~f~~~~W~~i~~~~~~~~~~t~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1451 (1774)
.+|++++|++||++|+++|++|+|+++ +.+..... +. .+. .+.
T Consensus 1493 ~~F~~~~W~~i~~~~~~lf~~T~p~~~--~~~~~~~~-------~~-----------~~~-----------~~~------ 1535 (1780)
T PLN03076 1493 HLFSDEKWLEVVLSLKEAANATLPDFS--YVVSGEYM-------PA-----------ENI-----------QDS------ 1535 (1780)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCchh--hccccccc-------cc-----------ccc-----------ccc------
Confidence 999999999999999999999999953 33311000 00 000 000
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCccchhhhhhhccccccccccccchhhhhccccccCCCCCCCCCCCCCCCCCCC
Q 000257 1452 TPFSLDHNQEAGLHLDGSEGVPSPSGRAQKTTEAFQRNQSIGQKIMGNMMDNRFLRSFTSKSKSQVPDASIPSSSPKLPD 1531 (1774)
Q Consensus 1452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1531 (1774)
. ++... .. ...+
T Consensus 1536 -~-----~~~~~---------~~-----------------------------------------~~~~------------ 1547 (1780)
T PLN03076 1536 -E-----NAEAA---------SS-----------------------------------------STAD------------ 1547 (1780)
T ss_pred -c-----ccccc---------cc-----------------------------------------cccc------------
Confidence 0 00000 00 0000
Q ss_pred CCCCCccccccchhhHHHH-HHH--HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHhhh
Q 000257 1532 AVEPDAKDEEESPIWATIR-GKC--ITQLLLLSAIDSIQRKYWGKLKAPQKIAIMDILLSLLEFSASYNSYSNLRMRMHH 1608 (1774)
Q Consensus 1532 ~~~~~~~~~~~~~~~~~i~-~kc--v~qLlli~~~~~l~~~~~~~l~~~~l~~l~~~l~~s~~fA~~fN~d~~lR~~L~~ 1608 (1774)
. ......+++.|+.|+ +|| |+||||||+++|||+.||.+||++|+++|++||++||+|||+||+|++||++|||
T Consensus 1548 -~--~~~~~~~~~~~~~i~~~kc~~v~QLllI~~~~~l~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN~d~~lR~~l~~ 1624 (1780)
T PLN03076 1548 -N--DAEAERSRRLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPRLSAKNTLVLFDALHTVASHAHKINSDTALRSKLQE 1624 (1780)
T ss_pred -c--hhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0 001112567788888 999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC--CchhhhhhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccccCCCCcccccchhhhHHHHHHHHHHH
Q 000257 1609 IPAERPP--LNLLRQELAGTSIYLDILQKTTSRFNGNGEEIPKSNGSQGVDTTLDDNTSSCITHFDEKLVGIAEEKLVSF 1686 (1774)
Q Consensus 1609 ~~~~~~~--PNLLkQEt~s~a~~l~il~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~ 1686 (1774)
+|+|+++ |||||||++|+|+||+||||||+|.+. ...+.++|+||+++
T Consensus 1625 ~g~~~~~~~PnLLkqE~~s~~~~l~il~~~~~d~~~------------------------------~~~~~~~~~~l~~~ 1674 (1780)
T PLN03076 1625 LGSMTQMQDPPLLRLENESYQICLTFLQNLILDKPP------------------------------LAKEAEVESRLVEL 1674 (1780)
T ss_pred hhhcccCCCCchhhHhHHHHHHHHHHHHHHhcCCCc------------------------------cchHHHHHHHHHHH
Confidence 9999975 999999999999999999999999531 01267899999999
Q ss_pred HHHHHHHHhhcccc-----------cCCcc--cccchhhcccchhHHHHHHHHHhcCChHHHHhhhhhhHHHHHHHhhcC
Q 000257 1687 CEQVLREASDLQSS-----------VGETT--NMHIHRVLELRSPIIVKVLKGMCLMNNQIFRRHLRDFYPLLVRLICCD 1753 (1774)
Q Consensus 1687 c~~il~~y~~l~~~-----------~~~~~--~~~~~R~~~aw~pvvv~iL~~~~~l~d~~F~~~~~~~y~l~~~l~~~~ 1753 (1774)
|.+||++|..++.. +.|.. .+.+||||+||+||||+||+||++|||++|++|++.||||+|+|++||
T Consensus 1675 c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l~~~~f~~~~~~~y~l~~~l~~~e 1754 (1780)
T PLN03076 1675 CEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCGLGDSSFEKNLVRFFPLLAGLISCE 1754 (1780)
T ss_pred HHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999998741 11211 146799999999999999999999999999999999999999999997
Q ss_pred c--hHHHHHHHHHHHHhhcccCC
Q 000257 1754 Q--MDIRGAVGDLFRMQLKALLP 1774 (1774)
Q Consensus 1754 ~--~e~r~~l~~~~~~~~~~~~~ 1774 (1774)
+ +|||.||+++|++|+||+++
T Consensus 1755 ~~~~e~r~~l~~~~~~rvg~~~~ 1777 (1780)
T PLN03076 1755 HGSNEVQVALSDMLSSWVGPVLL 1777 (1780)
T ss_pred CCCHHHHHHHHHHHHHHhhhhHh
Confidence 4 79999999999999999863
No 2
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-262 Score=2491.16 Aligned_cols=1473 Identities=41% Similarity=0.654 Sum_probs=1226.0
Q ss_pred cccHHHHHHHHhcccCCCChhHHHHHHHHHHHhhhcCCCCCCccccccccCCCCCCccccccccccccccccCccccccc
Q 000257 5 GFVSRAFESMLKECSGKKFPDLQKAIQTYLDNAKEVKPPASSETSEATASAGDGSSIETEAGAAEKGTEAVQLPAEQTEH 84 (1774)
Q Consensus 5 ~~~~~ale~i~~~~~~kk~~~l~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1774)
|||++++|||+++++||+|++|+++|+.++|++++..
T Consensus 1 ~~v~~~~~ki~~~~~~~~~s~l~~~~~~~~~~~~~~~------------------------------------------- 37 (1514)
T KOG0929|consen 1 MFVSSALEKILADAEWRKHSKLKKACKSALEELKANG------------------------------------------- 37 (1514)
T ss_pred CCccccHHHHhhhhhhhhHHHHHHHHHHHHHhhhccc-------------------------------------------
Confidence 6899999999999999999999999999999999721
Q ss_pred cCcccccchhHHHHHhhhCCCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHHhhcCcccCCCCCCCCCCcchHHHH
Q 000257 85 IGKTVGVSGSVATALANAGHTLEAADAELVLNPLRLAIETKNLKLLESALDCLHKLIAYDHLEGDPGLNGGKNAPLFTDI 164 (1774)
Q Consensus 85 ~~~p~~~~~~~~~~l~~~~~~~~~~d~~~i~~Pf~LAc~sks~ki~~~ALdcLqKLis~~~i~~~~~~~~~~~~~li~~i 164 (1774)
+...++|.+|+||++||+||++||+.+|+||+||||+|||++|++++.++++..+|+++
T Consensus 38 ---------------------~~~~~~e~~~~p~~la~~t~~~ki~~~~~dc~~kli~~~~l~g~~~~~~~~~~~l~~~~ 96 (1514)
T KOG0929|consen 38 ---------------------LSLAEAELYLLPFELACDTKSPKIVSPALDCLQKLIAYGHLTGESNDSGGPEDLLIDKI 96 (1514)
T ss_pred ---------------------CCCcchhhhhChHHhhcCCCCcchhccHHHHHHHHHHhhhccCCCCCCCCcchhHHHHH
Confidence 01258899999999999999999999999999999999999999999999989999999
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHHHHhccccccccchhHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHHHhcccc
Q 000257 165 LNMVCGCVDNSSSDSTILQVLKVLLTAVASAKFRVHGEPLLGVIRVCYNISLNSKSPINQATSKAMLTQMVSIVVRRMEN 244 (1774)
Q Consensus 165 v~tIc~c~~~~~~d~v~LQIlkaLlt~V~s~~~~vhg~~LlkaVrtcyni~l~Sks~vnq~tA~aTLtQmv~~VF~R~~~ 244 (1774)
+++||.|+++. ++.++||++|+||++|+|+++++||++|+.+||||||||+.| ++||++|+|||+||+++||.||+.
T Consensus 97 ~~~vc~~~~~~-~e~~elq~~k~lL~av~s~~~~i~~~~ll~~vr~c~~iyl~s--~~nq~~ak~~L~qml~~vf~~~e~ 173 (1514)
T KOG0929|consen 97 IEAVCKCFDGL-DESVELQVLKALLAAVTSQHIEIHGDSLLLIVRTCYNIYLGS--PINQTTAKATLTQMLNIVFRRMEE 173 (1514)
T ss_pred HhHhhhccCCC-chhhhHhHHHHHHHHHhccceeecCcchHHHHHHHHHHHhcC--cccchHHHHHHHHHHHHHHHHhhh
Confidence 99999999996 778999999999999999999999999999999999999998 999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCcccccccc-cCCCCCchhhhhhccCCCCccchhhhhhhhhcc
Q 000257 245 DQVSTLPTSSGHTETSSADDASRMPEETTLGDKNKDGMTLGDALTQ-AKDTPIASVEELHNLAGGADIKGLEAVLDKAVH 323 (1774)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1774)
+.........++......+. ......+....+.++...+.++ ...+.......-++...+ +.. .......
T Consensus 174 ~~~~~~~i~vs~~~~~~~~~----~s~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~ 244 (1514)
T KOG0929|consen 174 DSSDESQILVSELLRVSDDP----SSTEFVQQFIDSIMEVLVASPEDVGLTEMLDDNVNENSKTG-DSL----SLRDAES 244 (1514)
T ss_pred ccCcccccccccccccCCCc----chhHHHHHHHHHHHHhccCCccccccccccccccccccccC-ccc----ccCcccc
Confidence 76543310111111111000 0000000000000000000000 000000000000000000 000 0000000
Q ss_pred cccccccccCCcccccChhhhHHHHHHHHHHhccCCCCCc----hh-hhhhhHHHHHHHHHHHhcCCccccCChhhHHHH
Q 000257 324 LEDGKKITRGIDLESMSIGQQDALLVFRTLCKMGMKEDSD----EV-TTKTRILSLELLQGLLEGVSHSFTKNFHFIDSI 398 (1774)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~kDa~lvFr~LC~Ls~k~~~~----~~-~~rsk~lsLeLl~~iL~~~~~~f~~~~~f~~~i 398 (1774)
.+.......+......+.+++|||+|||+||||+||+.+. .. .+|+|+++||||..+|++++++|..+..|+.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~Daflvfr~Lckls~k~~s~~~~d~~s~~R~k~lsl~ll~~il~~~~~vf~s~~~fi~ai 324 (1514)
T KOG0929|consen 245 PESESERDDDSERSSQNKLQRDAFLVFRALCKLSMKPLSSEESDTQSHMRSKLLSLELLKSILENSGSVFRSNEHFIDAI 324 (1514)
T ss_pred cccccccCcchhhccccHHHHhHHHHHHHHHHhhCCCCCCCCCChHHHHhhhHHHHHHHHHHHhccchhhcCchhhHHHH
Confidence 0000000001112345899999999999999999999874 22 399999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhcCCCCC--hhhHHHHHHHHHHHhcCchH
Q 000257 399 KAYLSYALLRASVSQSSVIFQYATGIFSVLLLRFRESLKGEIGVFFPLIVLRSLDGSD--NNQKTSVLRMIDKVCKDPQM 476 (1774)
Q Consensus 399 k~~Lc~~Llrn~~S~~~~vF~lsl~if~~Ll~~~r~~Lk~Eievfl~~i~l~~Le~s~--~~qK~~~Le~l~~lc~dp~~ 476 (1774)
|||||.+|+||++|+.+.||+++|.||+.|+.+||.++|.||||||++|+++++|..+ +.||+++|..+.++|.||+.
T Consensus 325 kqyKOGalskn~vS~~~~vfe~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~s~~qk~~~l~~~~~ic~d~q~ 404 (1514)
T KOG0929|consen 325 KQYLCLALSKNSVSNVPMVFELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTSSFQQKMMVLRILTRICADPQT 404 (1514)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCCcccchhHHHHHHhhhcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999754 99999999999999999999
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHhccCCCCCCCccccccccccccchHHHHHHHHHHHHHHHHHhhhhhhcccCc
Q 000257 477 LVDVYVNYDCDLEAPNLFERMVTTLSKIAQGTQNTDPNSVMVSQTTTIKGSSLQCLVNVLKSLVEWERSRRETKKKNENS 556 (1774)
Q Consensus 477 lvdiy~NYDCd~~~~nife~lv~~Lsk~a~~~~~~~~~~~~~~~~~~l~~~~l~~Lv~il~sl~~w~~~~~~~~~~~~~~ 556 (1774)
+|++|+|||||.+.+||||++++.++|+|+|+.....+ ..+.++..++..++.||+++++++..|.++...........
T Consensus 405 ~Vdi~vnydcd~~~~nifer~v~~ltk~a~g~~~s~~~-~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~~~~~t~~ 483 (1514)
T KOG0929|consen 405 LVDIYVNYDCDSNSQNIFERLVNGLSKIAQGRTGSNLE-LSPVQELALRLKSLKCLVSILKSMSGWNDNQLNVEGVITGK 483 (1514)
T ss_pred ccccccCCccccCCccHHHHHHhhHHHhhcCCCccccC-CCCchhhhHhhhhhhhHHHHHHhhhhhccccccCCCcccCc
Confidence 99999999999999999999999999999985433322 34667889999999999999999999987622111000000
Q ss_pred chhhhhhcccccc-ccccCCCCchhHHHHHhhhHHHHHHHHHhhcChhhhHHHHHHCCCCCCChHHHHHHHHhcCCCChH
Q 000257 557 LSLAEEVNAKESV-EIKSRDDVPDNFEKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKA 635 (1774)
Q Consensus 557 ~~~~~~~~~~~~~-~~~~~~d~p~~~e~~k~~K~~~~~~i~~FN~~pkkGi~~L~~~g~i~~~p~~iA~fL~~~~~Ldk~ 635 (1774)
.....+.....+. ......|+|.+|+..|.+|. +++|+.+||.+|++||+||++.|+++++|.+||+||..+.+|||+
T Consensus 484 ~~~~~~~~~~~~s~~~~~~~~~~~q~e~~k~ek~-l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t~~l~kt 562 (1514)
T KOG0929|consen 484 KSSTTPIENELNSDTQSNDADDPEQFEALKSEKQ-LQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIGTEGLSKT 562 (1514)
T ss_pred cccCcchhhhccCccccccccChhhhhhhhhhcc-hHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHHhccCCCHH
Confidence 0000000000011 11223477999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHcCCCCCCChhHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhCCC-CCCChhHHHHH
Q 000257 636 MIGDYLGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPG-LFKNADTAYVL 714 (1774)
Q Consensus 636 ~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np~-~f~s~d~~yvL 714 (1774)
++|+|||+++++|++|||+|||.|||++++|++|||.||++||||||+|||||||+|||+|||+|||+ +|.|||+||+|
T Consensus 563 ~igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssADtaYVL 642 (1514)
T KOG0929|consen 563 ILGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSADTAYVL 642 (1514)
T ss_pred HHHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCHhHHHhhhccCCCCccccHHHHHHHHHHhhcccccccchhhh-hhhccccccccccchh
Q 000257 715 AYSVILLNTDAHNPMVWPKMTKSDFVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDVAK-SSRQKQEGEERGGLVG 793 (1774)
Q Consensus 715 aysiimLnTDlHn~~vk~kmt~~~Fi~~n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~~~-~~~~~~~~~~~~~~~~ 793 (1774)
||||||||||+|||+||+|||+++||+||||+|+|+|+|+|||+.+||+|..+||+|.++... .+.+..+.....++.+
T Consensus 643 AfSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~~~~~~~ 722 (1514)
T KOG0929|consen 643 AFSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLPKLLGLTG 722 (1514)
T ss_pred HHHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcchhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999988743 2222222222222333
Q ss_pred hhccccccccCccchhhhhHHHHHH--HHHHHHhcCcccceEEecccccchHHHHHHhhhHHHHHHHhhhhcCCChhHHH
Q 000257 794 ILNLALPKQKSSTDTKSESEAIVKQ--TQAIFRNQGVKRGVFYTSNRIELVRPMVEAVGWPLLAAFSVTMEEGENKPRVA 871 (1774)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~e~~~~~--t~~l~k~~~~~~~~f~~a~~~~~v~~mf~~~w~p~LaalS~~l~~~~d~~~i~ 871 (1774)
+.++.... ..+.+... ...+.+......+.||.++|++||||||+++|+|++|||++++++++|..++.
T Consensus 723 ~~~l~~~~---------r~~~~~~s~~~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n 793 (1514)
T KOG0929|consen 723 ILNLRSNS---------RMSAIDMSASQSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIAN 793 (1514)
T ss_pred ccccchhh---------hhhHHHhhhhHHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCcccccc
Confidence 33322211 12222222 22333444445689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhhccCCccchhhhhHHHHHHHHhhhccCCChhhhhHHHHHHHHHHhHHh
Q 000257 872 LCMEGFKAGIHITQVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLALCDTEPDSLQDTWNAVLECVSRLEFI 951 (1774)
Q Consensus 872 ~cLeGf~~~i~ia~~~~l~~~Rdafi~sL~kft~L~~~~em~~KNv~alr~LL~lA~~~Gn~L~~SW~~IL~~isqLe~l 951 (1774)
.||+||++++||+|.|+|++.||||+++|++||.++.+.+|+.||++++|+++.||.++||+|.++|.+|+.|++|+|++
T Consensus 794 ~cl~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~~e~k~kNi~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~ 873 (1514)
T KOG0929|consen 794 LCLDGFRLAISIASIFSMELGRDAFVQALARFTNLHAPSEMKQKNIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHT 873 (1514)
T ss_pred ccccchhheeeehhhhcCCccccHHHHHHHHHHhccCHHHHhHhhHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCc-ccccc-----------cC--CCc----cch-hHH--HHHHHHhhCCchhhhhhcCCCCChhHHHHHHHHHHhh
Q 000257 952 MSTPAI-SATVM-----------LG--SNQ----ISK-DAV--VQSLKELAGKPAEQVFVNSVKLPSDSIVEFFNALCGV 1010 (1774)
Q Consensus 952 ~~~P~~-~~~~~-----------~~--s~~----~s~-~~~--~~sl~e~~~~~id~IF~~S~~Ls~eAiv~Fv~ALc~v 1010 (1774)
+..+.. ..... .+ +.. .++ +.. ..+.+.+ .++++||++|..|+++||++|++|||+|
T Consensus 874 qli~sg~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~e~~~~~~s~s~v--i~~d~Ift~S~~l~~eaIv~FvkaLc~v 951 (1514)
T KOG0929|consen 874 QLIGSGSPPNKLPFVVSQREDYKKPGGSYDSSGDGSRIENVGEKSSVSVV--IQMDRIFTSSQRLDSEAIVDFVKALCKV 951 (1514)
T ss_pred HHhcCCCCcccCcchhhhchhccCCcccccccccccchhccccchhHHHH--HHhhhhhcccccCCchHHHHHHHHHHHH
Confidence 743221 11110 01 100 000 000 0111112 3589999999999999999999999999
Q ss_pred cHHhhhc-CCCccchHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcch
Q 000257 1011 SAEELRQ-TPARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNF 1089 (1774)
Q Consensus 1011 S~eEl~~-s~pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f 1089 (1774)
|++||.+ ++||+|+|||+|||+||||.|||++|++||.++++||+.|||+.|..|+.||+|+|||++|||++++|+.+|
T Consensus 952 s~~eL~s~~~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~vg~~~n~~vaifa~DslRQlsmkfle~~el~~f 1031 (1514)
T KOG0929|consen 952 SMDELLSPSTPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVSVGCNSNESVAIFALDSLRQLSMKFLERSELDNF 1031 (1514)
T ss_pred HHHHhcCCCCCCeeecccceeeeccccccchhhHHHHHHHhhhhhhccccCCCCceEEEehhhhHHhhhhhcchhhhhhh
Confidence 9999998 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhh
Q 000257 1090 TFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFD 1169 (1774)
Q Consensus 1090 ~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~ 1169 (1774)
+||++||+||+++|..+.+++|||+|+||+. +|++|||++||+|++.||.+.+++||..+|+++..++.+||.
T Consensus 1032 ~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~ 1104 (1514)
T KOG0929|consen 1032 RFQKDFLRPFEHIMKRSSSAEIRELVVRCIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFE 1104 (1514)
T ss_pred hHHHhhcCcchHHhhccCcchhHHHHHhhhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred hhhh---hhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHh
Q 000257 1170 QVVG---DCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLS 1246 (1774)
Q Consensus 1170 ~l~~---~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls 1246 (1774)
.+.. ++|.||+.||.+|+++..+.++|++||+++|.|+.++.++ ......+ ...+...+.|..+|+|+|++|+
T Consensus 1105 ~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~-~~~~~~~---~~~~~~~~~~~~~wfP~l~~ls 1180 (1514)
T KOG0929|consen 1105 NVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEG-VYNEKLK---VGKDSEFDVWNSGWFPMLFQLS 1180 (1514)
T ss_pred hhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccc-cchhhcc---cccccccccceeeeehhHhhhh
Confidence 8876 8999999999999999999999999999999999999987 1111111 1112256778999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHH
Q 000257 1247 DLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLF 1326 (1774)
Q Consensus 1247 ~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF 1326 (1774)
++++|+|++||++|++++|+|+..||+.|..+||+.+|+ +|||||+.++..++.. .+.+||.|||++||+.+|+||
T Consensus 1181 ~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~---~~~eW~~tT~~~Al~~~v~lf 1256 (1514)
T KOG0929|consen 1181 KIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDES---EKDEWLSTTCNHALQALVDLF 1256 (1514)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccchh---hhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999877653 456799999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCCCCCHhhHHHHHHHHHHHHhhcCchhhhhhccccc
Q 000257 1327 NTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDASYTTQPLELLNENLKNV 1406 (1774)
Q Consensus 1327 ~~yf~~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~~~~~f~~~~W~~i~~~~~~~~~~t~p~~l~~~~~~~~ 1406 (1774)
++||+.++.+|++++.+|.+||||+|+++|++|++||++|+.+||.+|++++|++++++|.++|++|+|++|++|....
T Consensus 1257 ~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~T~p~~l~~~~~~~- 1335 (1514)
T KOG0929|consen 1257 TQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKTTLPHELLTWRTMS- 1335 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHhcCcHHHhcccccC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999982210
Q ss_pred chhccccccCCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCccchhhhh
Q 000257 1407 TVVIRDSEVGAGEADNNQFGVSDNGKVSTLSSPTIGADGTPRNLNTPFSLDHNQEAGLHLDGSEGVPSPSGRAQKTTEAF 1486 (1774)
Q Consensus 1407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1486 (1774)
|+. ++ ++|-+...
T Consensus 1336 -----~~~---------------~~---------------------------~~e~~~~~-------------------- 1348 (1514)
T KOG0929|consen 1336 -----DIS---------------SE---------------------------QNELSQTI-------------------- 1348 (1514)
T ss_pred -----CCc---------------cc---------------------------cccccccc--------------------
Confidence 000 00 00000000
Q ss_pred hhccccccccccccchhhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 000257 1487 QRNQSIGQKIMGNMMDNRFLRSFTSKSKSQVPDASIPSSSPKLPDAVEPDAKDEEESPIWATIRGKCITQLLLLSAIDSI 1566 (1774)
Q Consensus 1487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~kcv~qLlli~~~~~l 1566 (1774)
+++ . .+..-..|+..||+
T Consensus 1349 ---------------~~~------------v---------------------------~~~~~~~k~~~~~~-------- 1366 (1514)
T KOG0929|consen 1349 ---------------SNI------------V---------------------------FYPATESKEDTDLL-------- 1366 (1514)
T ss_pred ---------------ccc------------c---------------------------cccccchHHHHHHH--------
Confidence 000 0 00000234444443
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHhhhCCCCCCCCchhhhhhhHHHHHHHHHHHHhcCCCCCCCC
Q 000257 1567 QRKYWGKLKAPQKIAIMDILLSLLEFSASYNSYSNLRMRMHHIPAERPPLNLLRQELAGTSIYLDILQKTTSRFNGNGEE 1646 (1774)
Q Consensus 1567 ~~~~~~~l~~~~l~~l~~~l~~s~~fA~~fN~d~~lR~~L~~~~~~~~~PNLLkQEt~s~a~~l~il~~~~~d~~~~~~~ 1646 (1774)
+||.+||++|+++|+|||.+||+|||+||+|++||++||++|+++++||||||||+|+++||+||||||.|++.
T Consensus 1367 --~~~~~l~~~~~~~l~d~l~~s~~fa~~fN~d~~lR~~l~~~~~~~~~pnLL~qE~~s~~~~l~~lf~~~~~~~~---- 1440 (1514)
T KOG0929|consen 1367 --GMYTSLSAQHLLKLLDILSESHEFAKQFNSDYELRTKLWRAGKGSQKPNLLRQETSSLACYLDILFRLLKDDPR---- 1440 (1514)
T ss_pred --HHHhhCCHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHhccCcc----
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999531
Q ss_pred CCCCCCCCCccccccCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHhhcccccCCcccccchhhcccchhHHHHHHHH
Q 000257 1647 IPKSNGSQGVDTTLDDNTSSCITHFDEKLVGIAEEKLVSFCEQVLREASDLQSSVGETTNMHIHRVLELRSPIIVKVLKG 1726 (1774)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~c~~il~~y~~l~~~~~~~~~~~~~R~~~aw~pvvv~iL~~ 1726 (1774)
. .+++|+||+++|.+||++|.++++ +.| +|| +..
T Consensus 1441 --------------------------~--~~~i~~~l~~~c~~~l~~y~~~~~--------~~~---~a~-------~~~ 1474 (1514)
T KOG0929|consen 1441 --------------------------V--SEEIESRLVTVCSEVLKGYLSLTS--------ETH---EAW-------LTP 1474 (1514)
T ss_pred --------------------------c--cHHHHHHHHHHHHHHHHHHHhccc--------cch---hhh-------cCC
Confidence 0 158999999999999999999962 335 799 222
Q ss_pred HhcCChHHHHhhhhhhHHHHHHHhhcCc-hHHHHHHHHHHHH
Q 000257 1727 MCLMNNQIFRRHLRDFYPLLVRLICCDQ-MDIRGAVGDLFRM 1767 (1774)
Q Consensus 1727 ~~~l~d~~F~~~~~~~y~l~~~l~~~~~-~e~r~~l~~~~~~ 1767 (1774)
+++.|..|+|.||++||+|+.++. +++|++++.||.+
T Consensus 1475 ----~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~lr 1512 (1514)
T KOG0929|consen 1475 ----SDEEFSARAPLYYALLCAMCAFDLDPELRHLLRFFFLR 1512 (1514)
T ss_pred ----cHHHHhccCchHHHHHHHHHHcCCcHHHHHHHHHhhhh
Confidence 999999999999999999999995 7999999999987
No 3
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-116 Score=1115.47 Aligned_cols=1184 Identities=22% Similarity=0.348 Sum_probs=870.4
Q ss_pred CcccccchhHHHHHhhhCCCCCccCHHHHHHHHHHHHccCCh--hHHHHHHHHHHHHhhcCcccCCCCCCCCCCcchHHH
Q 000257 86 GKTVGVSGSVATALANAGHTLEAADAELVLNPLRLAIETKNL--KLLESALDCLHKLIAYDHLEGDPGLNGGKNAPLFTD 163 (1774)
Q Consensus 86 ~~p~~~~~~~~~~l~~~~~~~~~~d~~~i~~Pf~LAc~sks~--ki~~~ALdcLqKLis~~~i~~~~~~~~~~~~~li~~ 163 (1774)
..||..+...++.+++....+..+||.+|++||+...+|.+. +||..||+.++|+++|+.|+.+.+. ..-.++.
T Consensus 42 ~~~ll~~f~~Lr~~ln~~~~l~~idp~~~L~PFL~vI~s~~~~g~iTslALssv~Kflt~~iid~~s~n----~~~am~~ 117 (1386)
T KOG0928|consen 42 SHSLLSSFKQLREVLNSLASLDTIDPLTYLSPFLEVIKSDETTGPITSLALSSVLKFLTLNIIDESSPN----AADAMRN 117 (1386)
T ss_pred chHHHHHHHHHHHHhhchhhhccCChHhHHhHHHHHHhcccCCccHHHHHHHHHHHHheeeecCccCcc----HHHHHHH
Confidence 456888899999999999999999999999999999998866 9999999999999999999876431 1335788
Q ss_pred HHHHHHhh-ccC---CCCchhHHHHHHHHHHHhccccccc-cchhHHHHHHHHHhhhccCC-ChhHHHHHHHHHHHHHHH
Q 000257 164 ILNMVCGC-VDN---SSSDSTILQVLKVLLTAVASAKFRV-HGEPLLGVIRVCYNISLNSK-SPINQATSKAMLTQMVSI 237 (1774)
Q Consensus 164 iv~tIc~c-~~~---~~~d~v~LQIlkaLlt~V~s~~~~v-hg~~LlkaVrtcyni~l~Sk-s~vnq~tA~aTLtQmv~~ 237 (1774)
++++|++| |++ .+||.|.|+|+++|.+++.+|.+.+ ..+.++..|.||+++.+.++ +.+.|.+|+.|+.-|+..
T Consensus 118 ~v~AvthcRFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSnq~Ic~ivqTcl~v~~q~~lselLr~~Ae~Tm~~~~~~ 197 (1386)
T KOG0928|consen 118 IVDAVTHCRFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSNQIICDIVQTCLRVVCQSRLSELLRKSAEHTMHDLTQL 197 (1386)
T ss_pred HHHHHHheeeeccCccchhHHHHHHHHHHHHHHhCchhhhcchhHHHHHHHHHHHHHHHHhHHHHhhcchhhhHHHHHHH
Confidence 99999999 444 4556677999999999999988765 99999999999999888765 999999999999999999
Q ss_pred HHhcccccccccCCCCCCCCCCCCCCcc-----CCCCcccccCCCCCCCCcccccccccCCCCCchhhhhhccCCCCccc
Q 000257 238 VVRRMENDQVSTLPTSSGHTETSSADDA-----SRMPEETTLGDKNKDGMTLGDALTQAKDTPIASVEELHNLAGGADIK 312 (1774)
Q Consensus 238 VF~R~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1774)
||+|++.........-+..++....... ..+..+.+......+..+.++... . +..+++....+..
T Consensus 198 IFsrLk~~~~~~~~~~~~~~es~~~~~~~~~~i~~k~~en~e~~~~~~~a~~~~~~~--------~-~~~~~~v~~~~~~ 268 (1386)
T KOG0928|consen 198 IFSRLKYIEPPYVNEMYINDESYQGNVLKDDFIGTKRVENGEISSEDESATFDDGSI--------S-EKFEVPVQQVDRE 268 (1386)
T ss_pred HHHhCccccccccchhhcchHhhhcccccccccCcccCCCCCccCcccccccccccc--------c-ccccCCccccccc
Confidence 9999997652111001111111000000 000000000000000000000000 0 0001110000000
Q ss_pred --hhhhhhhhhcccccccccccCCcccccChhhhHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHHHHHhcCCccccC
Q 000257 313 --GLEAVLDKAVHLEDGKKITRGIDLESMSIGQQDALLVFRTLCKMGMKEDSDEVTTKTRILSLELLQGLLEGVSHSFTK 390 (1774)
Q Consensus 313 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kDa~lvFr~LC~Ls~k~~~~~~~~rsk~lsLeLl~~iL~~~~~~f~~ 390 (1774)
..++. ..+ .......+|.+ ..+| .|-.||+|.+...+..+....++++|.||++.++-.|+.|+.
T Consensus 269 ~~~~~e~-a~~---~~~~~~~ygip------~~~~---~~h~l~sl~~~~n~~~~~es~~~~~l~lin~aie~~g~~i~~ 335 (1386)
T KOG0928|consen 269 QETDEEN-AEA---MAAMDENYGIP------VMKD---IFHFLLSLLNVTNTVAHDESVRSFALVLINSAIELGGDCIRE 335 (1386)
T ss_pred cCChhhh-hhH---hhcccccCCCc------eecc---chhhhhhhccccccccchhhhhHHHHHHHHhhHhhcchHHHH
Confidence 00000 000 00001122322 1333 466788888776665566667889999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhh-----cCCChhHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhcCCC---CChhhHHH
Q 000257 391 NFHFIDSIKAYLSYALLRAS-----VSQSSVIFQYATGIFSVLLLRFRESLKGEIGVFFPLIVLRSLDG---SDNNQKTS 462 (1774)
Q Consensus 391 ~~~f~~~ik~~Lc~~Llrn~-----~S~~~~vF~lsl~if~~Ll~~~r~~Lk~Eievfl~~i~l~~Le~---s~~~qK~~ 462 (1774)
||.|+.+|.+.+...++..+ .|-.+.++++-+.+...|...+|.++|.++|.||+.+.++.... .++.||.+
T Consensus 336 ~prll~liqd~~fk~l~~~~~~~~k~s~~~~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ 415 (1386)
T KOG0928|consen 336 HPRLLRLIQDPLFKHLIEFLQIPTKMSLERLVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEV 415 (1386)
T ss_pred hhHHHHHhccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Confidence 99999999999999999888 66677789999999999999999999999999999998877654 34999999
Q ss_pred HHHHHHHHhcCchHHHHHHHhcCCCCCCccHHHHHHHHHHHHhccCCCCCCCccccccccccccchHHHHHHHHHHHHHH
Q 000257 463 VLRMIDKVCKDPQMLVDVYVNYDCDLEAPNLFERMVTTLSKIAQGTQNTDPNSVMVSQTTTIKGSSLQCLVNVLKSLVEW 542 (1774)
Q Consensus 463 ~Le~l~~lc~dp~~lvdiy~NYDCd~~~~nife~lv~~Lsk~a~~~~~~~~~~~~~~~~~~l~~~~l~~Lv~il~sl~~w 542 (1774)
++|.+-.+|+.|.+++++|+|||||++++||||++++.|+|.|....... ...++..++++++.++...+.+-
T Consensus 416 ale~lv~~~R~p~F~~e~yvNfDCd~~csnlfedl~k~LtknafP~sg~~-------tt~~i~~l~l~~v~~l~e~~~~~ 488 (1386)
T KOG0928|consen 416 ALEALVLLCRIPSFLTEMYVNFDCDLYCSNLFEDLIKLLTKNAFPVSGPL-------TTASILPLDLEGVLGLAENMIDE 488 (1386)
T ss_pred HHHHHHHHHhccHHHHHHHHhcCCchhhhhhHHHHHHHHHHccCCccccc-------ccccccchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998432211 12334455565655555544332
Q ss_pred HHHhhhhhhcccCcchhhhhhccccccccccCCCCchhHHHHHhhhHHHHHHHHHhhcChhhhHHHHHHCCCCC--CChH
Q 000257 543 ERSRRETKKKNENSLSLAEEVNAKESVEIKSRDDVPDNFEKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVD--NDPT 620 (1774)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~p~~~e~~k~~K~~~~~~i~~FN~~pkkGi~~L~~~g~i~--~~p~ 620 (1774)
.+.... .+. .....+.-..+.+.+.+|+.+..|++.||++|||||+||+++|+|+ .||.
T Consensus 489 l~~~d~--~ef-----------------~~~k~e~~v~~iR~rk~K~~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~ 549 (1386)
T KOG0928|consen 489 LQDSDR--EEF-----------------WTDKCEVWVLFIRSRKRKRELILGAELFNEDPKKGIEFLQEKGLIPSDLDPT 549 (1386)
T ss_pred ccccCc--Ccc-----------------ccCCcchhhhhhccchhhHHHHHHHHHhccChhhHHHHHHhcCccCCCCChH
Confidence 111110 000 0000111122333344799999999999999999999999999998 5799
Q ss_pred HHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCCCCChhHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhh
Q 000257 621 SVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCAD 700 (1774)
Q Consensus 621 ~iA~fL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~ 700 (1774)
.+|.||+.+++|||++||+|||++++ .+||++|++.|||+||++|+|||.||++||||||+|+|+|++|+|++||+.+
T Consensus 550 ~~~~ffr~n~rLdKk~iGdfLc~~k~--~~vLn~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~ 627 (1386)
T KOG0928|consen 550 SVAEFFRYNPRLDKKTIGDFLCDPKN--VSVLNEFIGTFDFQGMRLDEALRLFLESFRLPGESQKIERVLEAFSERYYSD 627 (1386)
T ss_pred HHHHHHHhCccccHHHHHHHhcCcch--HHHHHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999996 8999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCChhHHHHHHHHHHHhhcCCCCCCCCCCCCHhHHHhhhccCCCCccccHHHHHHHHHHhhcccccccchhhhhh
Q 000257 701 NP-GLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDVAKSS 779 (1774)
Q Consensus 701 Np-~~f~s~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~~n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~~~~~ 779 (1774)
|+ +.|+++|+||+|||||||||||.||||||.+||++||+||+||+++|+|||+|||.+||.+|+.+||+||+++.+.
T Consensus 628 n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~g~DFpreyLseiY~SIk~~EIvmPee~hG~- 706 (1386)
T KOG0928|consen 628 NSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGINGGKDFPREYLSEIYQSIKTNEIVMPEEHHGT- 706 (1386)
T ss_pred CCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhcccccCCCCCCHHHHHHHHHHHhhcceecccccCCc-
Confidence 88 8999999999999999999999999999999999999999999999999999999999999999999998775211
Q ss_pred hccccccccccchhhhccccccccCccchhhhhHHHHHHHHHHHHhcCcccceEEecccccchHHHHHHhhhHHHHHHHh
Q 000257 780 RQKQEGEERGGLVGILNLALPKQKSSTDTKSESEAIVKQTQAIFRNQGVKRGVFYTSNRIELVRPMVEAVGWPLLAAFSV 859 (1774)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~l~k~~~~~~~~f~~a~~~~~v~~mf~~~w~p~LaalS~ 859 (1774)
..++ ...|-.++.+......-+.......+.|.||..+|.|.+||+++
T Consensus 707 ------------~~~~--------------------~~~W~~L~~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~ 754 (1386)
T KOG0928|consen 707 ------------EEMF--------------------EYRWINLISRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSY 754 (1386)
T ss_pred ------------hhhh--------------------HHHHHHHHhcccccCceeeccchhhhhHHHHHHHccchHHHHHH
Confidence 0000 01233333322233444556666789999999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhhccCCccc----h------hhhhHHHHHHHHhhhcc
Q 000257 860 TMEEGENKPRVALCMEGFKAGIHITQVLGMDTMRYAFLTSLVRFTFLHAPKE----M------RSKNVEALRTLLALCDT 929 (1774)
Q Consensus 860 ~l~~~~d~~~i~~cLeGf~~~i~ia~~~~l~~~Rdafi~sL~kft~L~~~~e----m------~~KNv~alr~LL~lA~~ 929 (1774)
.|+.++++++.+.|++|++.++.|++.+|+....|..+.+|||||.|.+|.. . ..|--.|..+++-+|+.
T Consensus 755 vFd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~At~tvf~~~n~ 834 (1386)
T KOG0928|consen 755 VFDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMATLTVFFGANK 834 (1386)
T ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999998877651 1 24667899999999999
Q ss_pred CCChhhhhHHHHHHHHHHhHHhhcCCCc--------------cc----ccccCCCc------------------------
Q 000257 930 EPDSLQDTWNAVLECVSRLEFIMSTPAI--------------SA----TVMLGSNQ------------------------ 967 (1774)
Q Consensus 930 ~Gn~L~~SW~~IL~~isqLe~l~~~P~~--------------~~----~~~~~s~~------------------------ 967 (1774)
.|++++.+|+.|++|+.++.+++..|.. .. ....+.+.
T Consensus 835 ~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~ss~Lls~fs~~Ls~d~e~~~~ 914 (1386)
T KOG0928|consen 835 FGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPELLKLNKLPVPQQEISINKPRKSSGLLSRFSSYLSGDEEEERP 914 (1386)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccccccCCCCCCccccCcccccccchHHHHHHHhcCCcccccCC
Confidence 9999999999999999999877643321 00 00000000
Q ss_pred -cchhHHH---HHHHHhhCCchhhhhhcCCCCChhHHHHHHHHHHhhcHH-hhhcCCCccchHHHHHHHHhhcccccccc
Q 000257 968 -ISKDAVV---QSLKELAGKPAEQVFVNSVKLPSDSIVEFFNALCGVSAE-ELRQTPARVFSLQKLVEISYYNMARIRMV 1042 (1774)
Q Consensus 968 -~s~~~~~---~sl~e~~~~~id~IF~~S~~Ls~eAiv~Fv~ALc~vS~e-El~~s~pr~FsLqKLvEVa~~Nm~Rirl~ 1042 (1774)
.+.+.+. ..+..+-++.++++|++|+.|..+++.+++++|...+.. +......+.|++..|+.|...|.+||.+.
T Consensus 915 ~Ptee~l~~~~~a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~s~~de~s~~F~lElli~I~l~nrdri~l~ 994 (1386)
T KOG0928|consen 915 CPTEEELSASKKALECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDLSMEDEESAVFCLELLIAITLSNRDRILLS 994 (1386)
T ss_pred CCcHHHHhhhHHHhhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCccCcccchHHHHHHHHHHHHhccccceEee
Confidence 0111111 122345568899999999999999999999999988875 33445689999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhc--CchHHHHHHHHHHHH
Q 000257 1043 WARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRN--SRSETIRSLIVDCIV 1120 (1774)
Q Consensus 1043 W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~--s~~~eIre~IL~cL~ 1120 (1774)
|....+.+-.-|+.--.. ...+...|+-.|.+++.+.+..++ ..-.++++++..+..- +.....-+.+---+.
T Consensus 995 w~~~~e~ll~~~~~~~~~-~~~lvek~v~gl~rv~~rll~yk~----~l~d~l~~sl~~ll~L~~ki~d~~~~ki~i~~~ 1069 (1386)
T KOG0928|consen 995 WFAVYEHLLGLLIQTLMG-SPLLVEKAVSGLLRVVNRLLPYKE----FLSDELLDSLRILLKLDPKILDAFLDKIAIFVS 1069 (1386)
T ss_pred ehhhHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHhhhhh----hhhHHHhhhHHHHHhhcHHHHHHHHHHHHHHHH
Confidence 875555544444432221 224566788888889999887544 2236788999887654 334567777888889
Q ss_pred HHHHhccCCccc--CcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHH
Q 000257 1121 QMIKSKVGSIKS--GWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLK 1198 (1774)
Q Consensus 1121 qmI~~~~~~IkS--GWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~ 1198 (1774)
+++.++..++++ ||+++|..|..+++.+.++. .+|..+.-.+.+ =..++.+.|.-||+|...|+....-+. ..
T Consensus 1070 ~lv~~n~~~v~~~~~w~~~~slL~~~~~h~~a~~--~~~~~~l~~m~e-~~hl~~~~fe~~v~~~~~fve~~~~~~--~~ 1144 (1386)
T KOG0928|consen 1070 KLVKANAANVHSKDGWALLFSLLELTARHPEADF--LKFYRLLSKMSE-ASHLTPDNFELYVDCGSTFVEARVGQI--MR 1144 (1386)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhcCCchhH--HHHHHHHHHhhc-cccCChHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 999999998876 99999999999999776543 334443333332 234567999999999999997532100 11
Q ss_pred HHHhHHHHHHHhhcccCCCCCCCC-CCCcc--cCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCC
Q 000257 1199 AIALLRICEDRLAEGLIPGGDLKP-IDVET--DATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKF 1275 (1774)
Q Consensus 1199 AI~lLw~~~d~L~~~~~~~~~~~~-~~~~~--~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f 1275 (1774)
.+..+...++......-.....+. ..+.. .........+|.+|+..+.++|.++|.+||+.||+.+.+++..-+..+
T Consensus 1145 ~l~~lde~s~sg~~~~kw~~~~~~~~~~~~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~~~~~~q~l 1224 (1386)
T KOG0928|consen 1145 SLSLLDEMSSSGEVLDKWEIEAKNATESGDESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRIIGALDQGL 1224 (1386)
T ss_pred hcchhhhhcccccchhHHHHHHhhhhcccccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 111111111111000000000000 00000 001111234999999999999999999999999999999877888999
Q ss_pred CHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHhhcC---
Q 000257 1276 SASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVC--FMLPPLLSLLLDCAKK--- 1350 (1774)
Q Consensus 1276 ~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~--~~L~~~l~lL~~ci~q--- 1350 (1774)
....|..||..|+||+++.+.....+. .....-|..|..++.+.++++|.+++..+. .++..+|-.+..++.+
T Consensus 1225 ~~~~~~~Cf~~vlfpll~~l~~~l~~~--~~~~~~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~Lwl~~ld~m~~l~~ 1302 (1386)
T KOG0928|consen 1225 AHSYWNPCFDLVLFPLLTDLLELLSDA--SEKGNEMEVTLLLATKLLSKVFLQELQDLSSLSMFSTLWLGVLDRMEKLMR 1302 (1386)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhccc--ccccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999997543211 111125789999999999999999999987 3677777666655542
Q ss_pred ------CChhHHHHHHHHHHHHHH
Q 000257 1351 ------PDQSVVSISLGALVHLIE 1368 (1774)
Q Consensus 1351 ------~n~~ia~ig~~~L~~Li~ 1368 (1774)
..+.+-.+...-+++.+.
T Consensus 1303 ~~~~e~~~~~l~e~~pe~l~~~~~ 1326 (1386)
T KOG0928|consen 1303 GKTSEETSDKLNEIVPELLKNMLL 1326 (1386)
T ss_pred cccccchhhhHHhhhhhhhhhhhh
Confidence 123445555555554444
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=5.9e-86 Score=853.03 Aligned_cols=932 Identities=25% Similarity=0.331 Sum_probs=739.5
Q ss_pred HHHHhccCCCCC-------chhhhhhhHHHHHHHHHHHhcCCccccCChhhHHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q 000257 351 RTLCKMGMKEDS-------DEVTTKTRILSLELLQGLLEGVSHSFTKNFHFIDSIKAYLSYALLRASVSQSSVIFQYATG 423 (1774)
Q Consensus 351 r~LC~Ls~k~~~-------~~~~~rsk~lsLeLl~~iL~~~~~~f~~~~~f~~~ik~~Lc~~Llrn~~S~~~~vF~lsl~ 423 (1774)
|.+|+...+..+ ..+.+|+++.+|+++.++|+.+. .|+.++++|+|..+.++++|+..+||+++++
T Consensus 2 ~~~~~~~i~~~~~~~~~n~~s~~~r~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~~~a~s~~~~v~~v~~~ 74 (1024)
T COG5307 2 RVLLVSQISNAPLKNSSNAPSQAVRSKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLSLSARSPLLPVFEVGLE 74 (1024)
T ss_pred chHHHHHHhhccccccccchhhhcccccccccchHHHhccch-------HHHHHhcchhhhhhhhcccccchhhhhhhHH
Confidence 556665544222 13678999999999999999887 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHhhcCCCCC--hhhHHHHHHHHHHHhcCchHHHHHHHhcCCCCC-CccHHHHHHHH
Q 000257 424 IFSVLLLRFRESLKGEIGVFFPLIVLRSLDGSD--NNQKTSVLRMIDKVCKDPQMLVDVYVNYDCDLE-APNLFERMVTT 500 (1774)
Q Consensus 424 if~~Ll~~~r~~Lk~Eievfl~~i~l~~Le~s~--~~qK~~~Le~l~~lc~dp~~lvdiy~NYDCd~~-~~nife~lv~~ 500 (1774)
|+|.++..++..++.|+++||..++..+++... ..||.+-|-..+++|..|+ ++.|+||||... ..|++++....
T Consensus 75 i~~~~~~~~~~~f~~~~~~~f~s~~f~i~~~~~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~~ 152 (1024)
T COG5307 75 IIGLRLSNLPKLFKLESSVFFISIYFPISHTTSTSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAFP 152 (1024)
T ss_pred HHHHHHhhhhhhhhhccchHHHHHhhhhhcccccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCCc
Confidence 999999999999999999999999999988643 8999999999999999999 999999999998 89999999999
Q ss_pred HHHHhccCCCCC----------------CCccccccccccccchHHHHHHHHHHHHHHHHHhh-h----hhhcccCcchh
Q 000257 501 LSKIAQGTQNTD----------------PNSVMVSQTTTIKGSSLQCLVNVLKSLVEWERSRR-E----TKKKNENSLSL 559 (1774)
Q Consensus 501 Lsk~a~~~~~~~----------------~~~~~~~~~~~l~~~~l~~Lv~il~sl~~w~~~~~-~----~~~~~~~~~~~ 559 (1774)
+++.+....... +.......++..+.....|.+++++++.. ... + ..+..+... .
T Consensus 153 ~s~~~t~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~---~sl~~s~~~~~~~~~~~s-~ 228 (1024)
T COG5307 153 LSRPSTNDPPETRSLIIEQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTK---NSLVPSAYYTNKDVPPLS-G 228 (1024)
T ss_pred cccccccCCCcchhhhhhhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhh---cccchhhhhcccCCCCcc-c
Confidence 988774322110 00011123466778889999999988762 111 0 000000000 0
Q ss_pred hhhhccccc--cccc---------cCCCCchhHHHHHhhhHHHHHHHHHhhcChhhhHHHHHHCCCCCC-ChHHHHHHHH
Q 000257 560 AEEVNAKES--VEIK---------SRDDVPDNFEKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDN-DPTSVAQFLR 627 (1774)
Q Consensus 560 ~~~~~~~~~--~~~~---------~~~d~p~~~e~~k~~K~~~~~~i~~FN~~pkkGi~~L~~~g~i~~-~p~~iA~fL~ 627 (1774)
++..+...+ .... ...+.--.....|+||+.+++++..||.+|++|+..|.+.+++.. .+.++|.||.
T Consensus 229 e~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~~~sia~~L~ 308 (1024)
T COG5307 229 EGLVSGSKSMVNSMKNSSRDSSSFVNSDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDSHKSIAEILE 308 (1024)
T ss_pred chhhhcCCcccccccccccChhhhccchHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCCcccchHHHHHHH
Confidence 000000000 0000 011111234458899999999999999999999999999999984 5899999999
Q ss_pred hcCC-CChHHHHhhhcCCCChHHHHHHHHHHcCCCCCCChhHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhCCCCCC
Q 000257 628 NAAN-LDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFK 706 (1774)
Q Consensus 628 ~~~~-Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np~~f~ 706 (1774)
.+.+ +||+.+|+|||+++..|..||++|+++|||+|++||+|||.||++||||||+|+||||||+||.+||+|||..|.
T Consensus 309 ~~~~~l~k~~lg~~L~~~~~kn~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~ 388 (1024)
T COG5307 309 GTEGRLDKKKLGLYLGTDDDKNNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFS 388 (1024)
T ss_pred hccCcccHHHHHHHhcCCchhHHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCccccc
Confidence 8765 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ch-hHHHHHHHHHHHhhcCCCCCCCCCCCCHhHHHhhhccCCCCccccHHHHHHHHHHhhcccccccchhhhhhhccccc
Q 000257 707 NA-DTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDVAKSSRQKQEG 785 (1774)
Q Consensus 707 s~-d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~~n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~~~~~~~~~~~ 785 (1774)
++ |+||+||||+||||||+|||++|.|||++||++|++|.++|+++|++||..+|+.|+++||++++++..... .+.
T Consensus 389 ~~~D~vyiLafSlimLNTDlHNp~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~-~~~- 466 (1024)
T COG5307 389 SKPDSVYILAFSLIMLNTDLHNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSET-SPE- 466 (1024)
T ss_pred CccceeehhHHHHHHHhccccChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcccccc-ccc-
Confidence 88 999999999999999999999999999999999999999999999999999999999999999998732110 000
Q ss_pred cccccchhhhccccccccCccchhhhhHHHHHHHHHHHHhcCcccceEEecccccchHHHHHHhhhHHHHHHHhhhhcCC
Q 000257 786 EERGGLVGILNLALPKQKSSTDTKSESEAIVKQTQAIFRNQGVKRGVFYTSNRIELVRPMVEAVGWPLLAAFSVTMEEGE 865 (1774)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~l~k~~~~~~~~f~~a~~~~~v~~mf~~~w~p~LaalS~~l~~~~ 865 (1774)
..+.+. ..+..++. .-+.+......+.+.+|+.++++++|+|++++++-.+..++
T Consensus 467 ------~~~~~~------------~ss~~~~~-------~~~rd~~~~~~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~ 521 (1024)
T COG5307 467 ------DNWPSL------------DSSFTNIA-------EFGRDNQRVADATHFDHVGPIFETSLFPILMSASDDLYSSD 521 (1024)
T ss_pred ------ccchhh------------hhhhhhhh-------hcccccccchhHhhhhhcchHHHHHHHHHHhhhcchhcccc
Confidence 000000 00000000 00111122235677899999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhhccCCccchhhhhHHHHHHHHhhhccCCChhhhhHHHHHHHH
Q 000257 866 NKPRVALCMEGFKAGIHITQVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLALCDTEPDSLQDTWNAVLECV 945 (1774)
Q Consensus 866 d~~~i~~cLeGf~~~i~ia~~~~l~~~Rdafi~sL~kft~L~~~~em~~KNv~alr~LL~lA~~~Gn~L~~SW~~IL~~i 945 (1774)
....+.+|.+ +|+.|++..+|++|+.+++++|.+++.. .++|+++...|.+++.++
T Consensus 522 ~~~si~~~~~-------ia~~f~~n~p~~~~~~~~s~~t~l~~~S-----------------~~~~~~~~~~~~d~~~~i 577 (1024)
T COG5307 522 GVVSISKCTR-------IAANFDFNDPRDAFLESLSEFTTLINSS-----------------VSEGPYLFIPSEDSLLSI 577 (1024)
T ss_pred cchHhhcccc-------hhhcceecchhHHHHHHhhccCCccccC-----------------ccccccccCccccccchh
Confidence 8887777776 8999999999999999999999887554 788999999999999999
Q ss_pred HHhHHhhc--------CCCcccccccC---------CCccc------hh----HHHH-------H-----HHHhhCCchh
Q 000257 946 SRLEFIMS--------TPAISATVMLG---------SNQIS------KD----AVVQ-------S-----LKELAGKPAE 986 (1774)
Q Consensus 946 sqLe~l~~--------~P~~~~~~~~~---------s~~~s------~~----~~~~-------s-----l~e~~~~~id 986 (1774)
++++..+. .|++..+...+ ++.+. .. .+.. . ....+....+
T Consensus 578 s~~~~~~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1024)
T COG5307 578 SVLELAARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIENKSLKLYLSSLIEDGKHFSPSIVKKLGSPELPKLNP 657 (1024)
T ss_pred hHHHHHHHhcccchhhcchhHHhHHhhccccccccchhhhhhhhhhHhhhhhhhhcCCCccccccccccccCccccccCc
Confidence 99987762 12221111100 00000 00 0000 0 0011223467
Q ss_pred hhhhcCCCCCh-hHHHHHHHHHHhhcHHhhhcCCCccchHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcCCCCHHH
Q 000257 987 QVFVNSVKLPS-DSIVEFFNALCGVSAEELRQTPARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKI 1065 (1774)
Q Consensus 987 ~IF~~S~~Ls~-eAiv~Fv~ALc~vS~eEl~~s~pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~vg~~~n~~v 1065 (1774)
+++....+++. .++++++++++.... .+| .+|+.++++++||.||+.+ ..||.++...+..++++.+..+
T Consensus 658 ~i~~~~s~~s~~~~~l~~~k~~~~~d~-----~~~---~~q~~v~~s~~n~~~i~~~-~~i~~~~~~~~~~~~~~~~~~l 728 (1024)
T COG5307 658 DISSGKSKLSVWSAVLSVFKAILSSDL-----PSP---PLQKEVDISKKNVDIIKSE-SKISNVLFKNSEGLSPDLNKTL 728 (1024)
T ss_pred ccccccccccccchHHHHHHHHHhccC-----CCC---CcHHhhhHHhhhhhhhhhh-hHHHhhcccchhhccccccccc
Confidence 89999999999 899999999999321 233 9999999999999999987 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhh
Q 000257 1066 AMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAA 1145 (1774)
Q Consensus 1066 a~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa 1145 (1774)
..+++|+.+|++++|++.+|+.++.||..|+.|+++.+.......|++..+.|..++++++...+.+| +++|.++..+.
T Consensus 729 ~~s~~~~~~q~s~~f~~iee~~~~~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~ 807 (1024)
T COG5307 729 LESALDSKSQLSSRFLEIEELSDFGFQIALLLPFEYSVEVSLVVAVKELVIGCSDNLLTEAASSIASG-KTIFEISAYED 807 (1024)
T ss_pred hhcccchhhhhccccCChhhhcchhHHHHHhccccccccccceeeeeeeehhhHHHHHHHHHHhhhcc-ccceeeeeccc
Confidence 99999999999999999999999999999999999999888889999999999999999999999999 99999998877
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCC
Q 000257 1146 DDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDV 1225 (1774)
Q Consensus 1146 ~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~ 1225 (1774)
.... +...++.+.. +.+..-..++|.+.+-+-.....+..++.+.+.+.++++.....+..+..- .
T Consensus 808 ~~~~---~~~~~s~~~~---~e~v~s~~n~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~--------~ 873 (1024)
T COG5307 808 LSST---LRYILSSLSN---DELVLSQENLFIELLSSKNEGKQNDKNLELRLHSVDYLRFLLPNVENWKNL--------S 873 (1024)
T ss_pred ccch---hhhHHHHhcc---hhhhhChhhHHHHHHhhhHHHHHhccchhhhhccHHHHHHHhHHHHHHHHH--------H
Confidence 6432 4555554422 111111238899999999999999999999999999988776666542100 0
Q ss_pred cccCccchhhhhHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhh--cccc
Q 000257 1226 ETDATFDVTEHFWFPMLAGLSDLTS-DPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHA--GKES 1302 (1774)
Q Consensus 1226 ~~~~~~~~~~~lW~pLL~~Ls~l~~-d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~--~~~~ 1302 (1774)
......+...+.|+++|.++.++.+ -...++ |..+..++..|..++|+.|++.-++|++....-. ++..
T Consensus 874 ~~~~~~~~~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~ 945 (1024)
T COG5307 874 SVLSANSNFSKDIFSYLEKYVKIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSDKTN 945 (1024)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCcccccc
Confidence 0001112236799999999999976 467777 9999999999999999999999999999887632 2222
Q ss_pred cc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCCCCCHhhHH
Q 000257 1303 LI--SSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWD 1380 (1774)
Q Consensus 1303 ~~--~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~~~~~f~~~~W~ 1380 (1774)
.. ...-.|+.++...|+...+.+|+.+|+.+. ++++.+.++..| .+|.+++...+...|.+-.|+
T Consensus 946 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~-~~~~~~~l~~~c------------~~~~~~~~~~~~~~~~~~~~n 1012 (1024)
T COG5307 946 LDNDEIELVWASTDLLAALKEFIELFNSIFEKLE-ILAGKLILLHQC------------LNNCDQLGLGAIETLEEILWN 1012 (1024)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh------------cCcHhhhhhhhHHHHhhhhHH
Confidence 11 123589999999999999999999999999 999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHh
Q 000257 1381 TLLKSIRDASY 1391 (1774)
Q Consensus 1381 ~i~~~~~~~~~ 1391 (1774)
++-..+.++|+
T Consensus 1013 ~~~~~~~~~~~ 1023 (1024)
T COG5307 1013 KIDVPTNELFY 1023 (1024)
T ss_pred Hhhcccchhcc
Confidence 99988887764
No 5
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.4e-65 Score=638.72 Aligned_cols=988 Identities=20% Similarity=0.241 Sum_probs=651.7
Q ss_pred cccHHHHHHHHh--cccC-CCChhHHHHHHHHHHHhhhcCCCCCCccccccccCCCCCCccccccccccccccccCcccc
Q 000257 5 GFVSRAFESMLK--ECSG-KKFPDLQKAIQTYLDNAKEVKPPASSETSEATASAGDGSSIETEAGAAEKGTEAVQLPAEQ 81 (1774)
Q Consensus 5 ~~~~~ale~i~~--~~~~-kk~~~l~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1774)
|=++|||+.-|. +.|+ |||+.+++|.+.++..|+...... . +++...
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s------------~-------------ds~vle----- 58 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSAS------------R-------------DSDVLE----- 58 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhcccc------------c-------------cccccc-----
Confidence 446788886653 2344 569999999999999999754311 0 011000
Q ss_pred ccccCcccccchhHHHHHhhhCCCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHHhhcCcccCCCCCCCCCCcchH
Q 000257 82 TEHIGKTVGVSGSVATALANAGHTLEAADAELVLNPLRLAIETKNLKLLESALDCLHKLIAYDHLEGDPGLNGGKNAPLF 161 (1774)
Q Consensus 82 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~d~~~i~~Pf~LAc~sks~ki~~~ALdcLqKLis~~~i~~~~~~~~~~~~~li 161 (1774)
. . -+++..||++||.+|++|++.+||.|||||+.|+.++.+. .....
T Consensus 59 -----t---------------------~-~edf~~PfllaC~sr~tRl~~ials~iQkL~~~dsleps~------~aeil 105 (1610)
T KOG1848|consen 59 -----T---------------------P-NEDFLVPFLLACISRNTRLFVIALSCIQKLGRHDSLEPSV------TAEIL 105 (1610)
T ss_pred -----c---------------------C-CcccccceeeecccCcccceeeHHHHHHHHhccCCCCCcc------cHHHH
Confidence 0 0 2478999999999999999999999999999999998641 12344
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHhccccccccchhHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHHHhc
Q 000257 162 TDILNMVCGCVDNSSSDSTILQVLKVLLTAVASAKFRVHGEPLLGVIRVCYNISLNSKSPINQATSKAMLTQMVSIVVRR 241 (1774)
Q Consensus 162 ~~iv~tIc~c~~~~~~d~v~LQIlkaLlt~V~s~~~~vhg~~LlkaVrtcyni~l~Sks~vnq~tA~aTLtQmv~~VF~R 241 (1774)
+.-+++... . +.+||++++..+.++.++-..+.|..+++++++|||++. +|++++-++|.||++|+|..||+|
T Consensus 106 dn~L~a~~q---a---e~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~-~knkvV~NaAaAtlrQlV~~vFdr 178 (1610)
T KOG1848|consen 106 DNNLWAAAQ---A---EWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLY-QKNKVVFNAAAATLRQLVLLVFDR 178 (1610)
T ss_pred HHHHHHHHH---H---HHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHc-CCCcceechhHHHHHHHHHHHHHh
Confidence 444444333 2 678999999999999999888999999999999999988 788899999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCCccCCCCcccccCCCCCCCCcccccccccCCCCCchhhhhhccCCCCccchhhhhhhhh
Q 000257 242 MENDQVSTLPTSSGHTETSSADDASRMPEETTLGDKNKDGMTLGDALTQAKDTPIASVEELHNLAGGADIKGLEAVLDKA 321 (1774)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1774)
|......... . ++....+..
T Consensus 179 v~ies~~~d~---------~----------------------------------------l~sl~~~s~----------- 198 (1610)
T KOG1848|consen 179 VPIESDAFDF---------I----------------------------------------LPSLTEASG----------- 198 (1610)
T ss_pred cccccccccc---------c----------------------------------------chhhhccCC-----------
Confidence 9843211000 0 000000000
Q ss_pred cccccccccccCCcccccChhhhHHHHHHHHHHhccCCCCCc---hhhhhhhHHHHHHHHHHHhcCCccccCChhhH--H
Q 000257 322 VHLEDGKKITRGIDLESMSIGQQDALLVFRTLCKMGMKEDSD---EVTTKTRILSLELLQGLLEGVSHSFTKNFHFI--D 396 (1774)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~kDa~lvFr~LC~Ls~k~~~~---~~~~rsk~lsLeLl~~iL~~~~~~f~~~~~f~--~ 396 (1774)
.+..... ....+++++|++..|..+|.+.....+. .+..-++..++|++++++.+....+..+..|. +
T Consensus 199 ----t~sl~aa---~~~~~~l~~dI~~~~~~i~l~~~~~~~~~L~~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ 271 (1610)
T KOG1848|consen 199 ----TSSLEAA---LTALDPLQKDICVGFENIQLMYPAIFDQLLAFIEESTKSPGLELLESILKSNASKSDQIQDFAPAE 271 (1610)
T ss_pred ----ccchhhc---ccccchHHHhHhcchHHHHHhcccccHhHHhcchhccccchhhhhhhhhhcchhhhHHHHHhhHHH
Confidence 0000000 0134789999999999999876655443 23456678999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHhhcCCC-----------hhHHHHHHHHHHHHHHHH-----HHHhH-----------------------
Q 000257 397 SIKAYLSYALLRASVSQS-----------SVIFQYATGIFSVLLLRF-----RESLK----------------------- 437 (1774)
Q Consensus 397 ~ik~~Lc~~Llrn~~S~~-----------~~vF~lsl~if~~Ll~~~-----r~~Lk----------------------- 437 (1774)
+++...||.+.|...-.+ ...-++.+.++..++.++ +..++
T Consensus 272 ll~~~~~Py~~Rl~~~sv~~i~~l~~~ea~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~ 351 (1610)
T KOG1848|consen 272 LLALNVVPYAERLLLRSVDLIQKLACHEAVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIG 351 (1610)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccC
Confidence 999999999888632000 000111122222222211 00011
Q ss_pred HHHHhHHHHHHhhcCCC-CChhhHHHHHHHHHHHhcCchHHHHHHHhcCCCCCCccHHHHHHHHHHHHhccCCCCCCCcc
Q 000257 438 GEIGVFFPLIVLRSLDG-SDNNQKTSVLRMIDKVCKDPQMLVDVYVNYDCDLEAPNLFERMVTTLSKIAQGTQNTDPNSV 516 (1774)
Q Consensus 438 ~Eievfl~~i~l~~Le~-s~~~qK~~~Le~l~~lc~dp~~lvdiy~NYDCd~~~~nife~lv~~Lsk~a~~~~~~~~~~~ 516 (1774)
.+.++|+...+ +.-.. .+.||+.+++++++++|.++..+..++.|+||++...+++++.+-.+..+++
T Consensus 352 v~~~v~la~~l-k~~s~~~~~~p~~l~~~~~~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy---------- 420 (1610)
T KOG1848|consen 352 VPVAVFLASLL-KFDSMDLELWPRFLDFLFLKSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVY---------- 420 (1610)
T ss_pred cchhhhHHHHh-hhhhcCcccCccHhHHHhhccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHH----------
Confidence 12333333322 11111 2389999999999999999999999999999999999999988777766554
Q ss_pred ccccccccccchHHHHHH-HHHHHHHHHHHhhhhhhcccCcchhhhhhccccccccccCCCCchhHHHHHhhhHHHHHHH
Q 000257 517 MVSQTTTIKGSSLQCLVN-VLKSLVEWERSRRETKKKNENSLSLAEEVNAKESVEIKSRDDVPDNFEKAKAHKSTMEAAI 595 (1774)
Q Consensus 517 ~~~~~~~l~~~~l~~Lv~-il~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~p~~~e~~k~~K~~~~~~i 595 (1774)
.||+. +-.++.+...+... ++.+..|..
T Consensus 421 -------------~~lv~ti~nsi~e~l~k~s~--------------------------esg~~eFt~------------ 449 (1610)
T KOG1848|consen 421 -------------KELVGTISNSIQEMLNKSSI--------------------------ESGGSEFTS------------ 449 (1610)
T ss_pred -------------HHHHHhhhHHHHHHHHHhHH--------------------------hhcCccchh------------
Confidence 22322 22233221111000 000111110
Q ss_pred HHhhcChhhhHHHHHHCCCCCCChHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCCCCChhHHHHHHHh
Q 000257 596 SEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLK 675 (1774)
Q Consensus 596 ~~FN~~pkkGi~~L~~~g~i~~~p~~iA~fL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~i~~ALR~fL~ 675 (1774)
-.+||++- -+.+... -+++.. ++|.
T Consensus 450 ------k~k~Ie~~-----~dnds~s---------------------------tavl~~----l~~~------------- 474 (1610)
T KOG1848|consen 450 ------KEKGIELR-----EDNDSMS---------------------------TAVLLQ----LSFS------------- 474 (1610)
T ss_pred ------hhcCceee-----ccCchHH---------------------------HHHHHH----HHhh-------------
Confidence 01233321 0011111 111111 0000
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHhhcCCCCCCCCCCCCHhHHHhhhccCCCCccccHH
Q 000257 676 GFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNAVNDAEECASTE 755 (1774)
Q Consensus 676 ~frLPgEaQ~IdRime~Fa~ry~~~Np~~f~s~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~~n~~~d~~~~lp~e 755 (1774)
-+.-+|.-. +...++||+... +-.+|-.
T Consensus 475 ---------------------~~~li~e~~----~ss~~avSt~~~-------------~a~~v~~-------------- 502 (1610)
T KOG1848|consen 475 ---------------------NKVLIPEGL----YSSRMAVSTLLK-------------RAQDVLH-------------- 502 (1610)
T ss_pred ---------------------hhhhccccc----hhhhHHHHHHHH-------------HHHHHHH--------------
Confidence 001122211 122334444321 1112211
Q ss_pred HHHHHHHHhhcccccccchhhhhhhccccccccccchhhhccccccccCccchhhhhHHHHHHHHHHHHhcCcccceEEe
Q 000257 756 LLEEIYDSIVKEEIKMKDDVAKSSRQKQEGEERGGLVGILNLALPKQKSSTDTKSESEAIVKQTQAIFRNQGVKRGVFYT 835 (1774)
Q Consensus 756 ~L~~iY~~I~~~ei~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~l~k~~~~~~~~f~~ 835 (1774)
+|-. .+....+ . ....
T Consensus 503 ----l~~~--~~~~s~k--------------~--------------------------------------------~l~~ 518 (1610)
T KOG1848|consen 503 ----LYIE--DEVLSNK--------------C--------------------------------------------PLPR 518 (1610)
T ss_pred ----Hhhh--hhhhccC--------------C--------------------------------------------cccc
Confidence 1110 0000000 0 0000
Q ss_pred cccccchHHHHHHhhhHHHHHHHhhhhcCCChhHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhhccCC-------
Q 000257 836 SNRIELVRPMVEAVGWPLLAAFSVTMEEGENKPRVALCMEGFKAGIHITQVLGMDTMRYAFLTSLVRFTFLHA------- 908 (1774)
Q Consensus 836 a~~~~~v~~mf~~~w~p~LaalS~~l~~~~d~~~i~~cLeGf~~~i~ia~~~~l~~~Rdafi~sL~kft~L~~------- 908 (1774)
-+..+..+-|....|..++.+++..+..+.|..+....+.++...+..+|..+-+++..+++.+|++|+....
T Consensus 519 ~~kLe~i~~a~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr 598 (1610)
T KOG1848|consen 519 QTKLEIIFDAVLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLR 598 (1610)
T ss_pred ceeehhHHHHHhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHh
Confidence 0112345555667788899999999999999999999999999999999999999999999999999974321
Q ss_pred ----------------------------------------------ccchhhhhHHHHHHHHhhhccCCChhhhhHHHHH
Q 000257 909 ----------------------------------------------PKEMRSKNVEALRTLLALCDTEPDSLQDTWNAVL 942 (1774)
Q Consensus 909 ----------------------------------------------~~em~~KNv~alr~LL~lA~~~Gn~L~~SW~~IL 942 (1774)
+.-++.||++++|+++++++.+-+.++.+|..++
T Consensus 599 ~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm 678 (1610)
T KOG1848|consen 599 CLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLM 678 (1610)
T ss_pred hccccCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 1236799999999999999999999999999999
Q ss_pred HHHHHhHHhhcC-CCccccc-cc--CCCc-cchhHHHHHHHH--hhCCchhhhhhcCCCCChhHHHHHHHHHHhhcHHhh
Q 000257 943 ECVSRLEFIMST-PAISATV-ML--GSNQ-ISKDAVVQSLKE--LAGKPAEQVFVNSVKLPSDSIVEFFNALCGVSAEEL 1015 (1774)
Q Consensus 943 ~~isqLe~l~~~-P~~~~~~-~~--~s~~-~s~~~~~~sl~e--~~~~~id~IF~~S~~Ls~eAiv~Fv~ALc~vS~eEl 1015 (1774)
.+.+.|++.... |...... .. +.+. .+.....++..+ ++....+++|.++++++..+....++||.+++.+-+
T Consensus 679 ~t~~~ls~~~~m~p~qt~l~v~t~~~~hp~~p~~~~~~~ynd~~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sl 758 (1610)
T KOG1848|consen 679 YTTSSLSQPAYMEPLQTLLAVITSSSVHPIQPLTAPRQSYNDDLLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSL 758 (1610)
T ss_pred HHHHHhcchhhcCHHHhhHHHHhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999988765432 3211000 00 1000 011111122221 233456899999999999999999999999998754
Q ss_pred hc------CCCcc--chHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHh-hhhh
Q 000257 1016 RQ------TPARV--FSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQL-SMKYL-ERAE 1085 (1774)
Q Consensus 1016 ~~------s~pr~--FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQL-s~kfL-e~eE 1085 (1774)
-. +.-|. +-++-.+-.+..|-.|-.. -|+...+||.+.+||--.++... +++.++. +.+-. .+.+
T Consensus 759 i~~~~~~~sslr~~~~~l~v~~~~~~l~e~snq~----~~~naa~~l~t~~n~vl~s~~~~-~asals~da~~dv~sk~t 833 (1610)
T KOG1848|consen 759 ILETVCSCSSLRFLDSKLDVSGWSLILKELSNQF----KIINAAPELRTRANNVLASILVD-VASALSNDASPDVYSKQT 833 (1610)
T ss_pred HHHhhccccccccccchhhhhHHHHHHHHhhhHH----HHHHhHHHHHHHHHHHHHHHHhh-hhhhhhcccccchhccce
Confidence 32 11222 2222222222222222211 24455555655555532222111 1222111 10000 0000
Q ss_pred hcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcc---hhHHHHHHHHHHHHH
Q 000257 1086 LTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADD---EVESIVESAFENVEQ 1162 (1774)
Q Consensus 1086 L~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d---~~e~iV~~AF~~l~~ 1162 (1774)
-+++-|-.++-.++.....++..|+|-.-++||..++++.|+.+-+||..||+++..++.. .+.++|++||+++++
T Consensus 834 -i~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrl 912 (1610)
T KOG1848|consen 834 -IFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRL 912 (1610)
T ss_pred -eeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhh
Confidence 1234445555555555556788999999999999999999999999999999999987753 378999999999999
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCC----CCC---CCCCcccCccchhh
Q 000257 1163 VILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGG----DLK---PIDVETDATFDVTE 1235 (1774)
Q Consensus 1163 I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~----~~~---~~~~~~~~~~~~~~ 1235 (1774)
|++||++++|.+|+.+||+++..|++|+.|+||||+||++||.++|+++......+ +.+ ...++.......++
T Consensus 913 IssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e 992 (1610)
T KOG1848|consen 913 ISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPE 992 (1610)
T ss_pred hhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999997322111 000 01122223344578
Q ss_pred hhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccc--cccchhhhHHH
Q 000257 1236 HFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKES--LISSEDEWFRE 1313 (1774)
Q Consensus 1236 ~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~--~~~~~~~Wl~e 1313 (1774)
.+|+.||..|+++|.|+|+|||++|.||||+|+.+||+.|++..|+.|||+|++|+++..+...... ...-+++| .|
T Consensus 993 ~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqw-te 1071 (1610)
T KOG1848|consen 993 VLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQW-TE 1071 (1610)
T ss_pred HHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhh-hh
Confidence 9999999999999999999999999999999999999999999999999999999999776432111 01124899 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 000257 1314 TSIHSLQLLCNLFNTFYKEVCF------MLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEV 1369 (1774)
Q Consensus 1314 T~~~aL~~lv~LF~~yf~~l~~------~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~ 1369 (1774)
|++++++|++++|..||..|.. .+..++..|-+.++..+..+.-.++.|||.++.+
T Consensus 1072 t~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1072 TSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 9999999999999999998874 2344555666667789999999999999999987
No 6
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-50 Score=435.56 Aligned_cols=194 Identities=44% Similarity=0.777 Sum_probs=189.9
Q ss_pred HHHhhhHHHHHHHHHhhcChhhhHHHHHHCCCCCCChHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCC
Q 000257 583 KAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFS 662 (1774)
Q Consensus 583 ~~k~~K~~~~~~i~~FN~~pkkGi~~L~~~g~i~~~p~~iA~fL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~ 662 (1774)
+.+++.+.+-.|-.+||.+|+|||+||+++.++.++|++||+||+.-+||+|++||+|||++++||.+||++|+++..|.
T Consensus 57 kt~q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef~ 136 (395)
T KOG0930|consen 57 KTKQRNKQVAMGRKKFNMDPKKGIQFLIENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEFT 136 (395)
T ss_pred hhHHHhHHHhhchhhcCCChHHHhHHHHHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHhc
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHhhcCCCCCCCCCCCCHhHHHhh
Q 000257 663 GMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRM 742 (1774)
Q Consensus 663 ~~~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np~~f~s~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~~ 742 (1774)
++++++|||+||=+||||||+|||||+||+||+|||.|||++|.|+|++|+|+||||||||.+|||+||.|-+++-||.|
T Consensus 137 dlnlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~M 216 (395)
T KOG0930|consen 137 DLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFIAM 216 (395)
T ss_pred cchHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCccccHHHHHHHHHHhhcccccccchhh
Q 000257 743 NAVNDAEECASTELLEEIYDSIVKEEIKMKDDVA 776 (1774)
Q Consensus 743 n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~~ 776 (1774)
|+|++.|.|+|+|.|..+|++|+.++++++++.+
T Consensus 217 Nrgineggdlpee~LrnlyeSi~~epFkIPeddg 250 (395)
T KOG0930|consen 217 NRGINEGGDLPEELLRNLYESIKNEPFKIPEDDG 250 (395)
T ss_pred hhccccCCCCcHHHHHHHHHHhcCCCCCCCcccC
Confidence 9999999999999999999999999999999874
No 7
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=2.3e-47 Score=420.37 Aligned_cols=183 Identities=49% Similarity=0.859 Sum_probs=179.5
Q ss_pred hhHHHHHHHHHhhcChhhhHHHHHHCCCC-CCChHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCCCCC
Q 000257 587 HKSTMEAAISEFNRKPVKGVEYLISNKLV-DNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGMK 665 (1774)
Q Consensus 587 ~K~~~~~~i~~FN~~pkkGi~~L~~~g~i-~~~p~~iA~fL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~ 665 (1774)
+|..+++|+.+||++|++||+||++.+++ .++|++||+||+.+++|||.+||+|||++++++.+||++|++.|||+|++
T Consensus 1 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~ 80 (185)
T cd00171 1 RKTLLSEGRQLFNRKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLR 80 (185)
T ss_pred CcHHHHHHHHHHccCHHHHHHHHHHCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCC
Confidence 47889999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhCCCCCC-ChhHHHHHHHHHHHhhcCCCCCCCCCCCCHhHHHhhhc
Q 000257 666 FDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFK-NADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNA 744 (1774)
Q Consensus 666 i~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np~~f~-s~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~~n~ 744 (1774)
|++|||.||.+|+||||+|+|||||+.||+|||+|||+.+. |+|++|+|+||+||||||+|||++++|||+++|++|++
T Consensus 81 i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 81 LDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred cCCCCccccHHHHHHHHHHhhcccc
Q 000257 745 VNDAEECASTELLEEIYDSIVKEEI 769 (1774)
Q Consensus 745 ~~d~~~~lp~e~L~~iY~~I~~~ei 769 (1774)
++++++++|+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986
No 8
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=5.1e-47 Score=420.49 Aligned_cols=185 Identities=48% Similarity=0.815 Sum_probs=170.2
Q ss_pred HhhhHHHHHHHHHhhcChhhhHHHHHHCCCC--CCChHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCC
Q 000257 585 KAHKSTMEAAISEFNRKPVKGVEYLISNKLV--DNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFS 662 (1774)
Q Consensus 585 k~~K~~~~~~i~~FN~~pkkGi~~L~~~g~i--~~~p~~iA~fL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~ 662 (1774)
|++|..+++|+.+||.+|++||+||++.|++ +++|.+||+||+.+++|||.+||+|||+++++|..||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 7899999999999999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhCCC--CCCChhHHHHHHHHHHHhhcCCCCCCCCCCCCHhHHH
Q 000257 663 GMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPG--LFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFV 740 (1774)
Q Consensus 663 ~~~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np~--~f~s~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi 740 (1774)
|++|++|||.||.+|+||||+|+|||||+.||++|++|||+ .|.|+|++|+|+||+||||||+|||++++|||+++|+
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 99999999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred hhhccCCCCccccHHHHHHHHHHhhcccc
Q 000257 741 RMNAVNDAEECASTELLEEIYDSIVKEEI 769 (1774)
Q Consensus 741 ~~n~~~d~~~~lp~e~L~~iY~~I~~~ei 769 (1774)
+|+++++++.++|+++|.+||++|+++||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 9
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=1.4e-46 Score=415.39 Aligned_cols=183 Identities=50% Similarity=0.826 Sum_probs=179.7
Q ss_pred hhHHHHHHHHHhhcChhhhHHHHHHCCCCC-CChHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCCCCC
Q 000257 587 HKSTMEAAISEFNRKPVKGVEYLISNKLVD-NDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGMK 665 (1774)
Q Consensus 587 ~K~~~~~~i~~FN~~pkkGi~~L~~~g~i~-~~p~~iA~fL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~ 665 (1774)
+|..+.+|+.+||.+|++||+||++.|++. ++|++||+||+.++++||.+||+|||++++++.+||++|++.|||+|++
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~~ 81 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAKDDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAKD 81 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCCc
Confidence 578899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhCCCCCC--ChhHHHHHHHHHHHhhcCCCCCCCCCCCCHhHHHhhh
Q 000257 666 FDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFK--NADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMN 743 (1774)
Q Consensus 666 i~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np~~f~--s~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~~n 743 (1774)
||+|||.||..|+||||+|+|||||+.||++||+|||+.+. |+|++|+|+||+||||||+|||++|+|||+++|++|+
T Consensus 82 i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~~~ 161 (187)
T smart00222 82 LDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKNV 161 (187)
T ss_pred HHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred ccCCCCccccHHHHHHHHHHhhcccc
Q 000257 744 AVNDAEECASTELLEEIYDSIVKEEI 769 (1774)
Q Consensus 744 ~~~d~~~~lp~e~L~~iY~~I~~~ei 769 (1774)
++++++.++|+++|++||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 162 RGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred hccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986
No 10
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-45 Score=416.68 Aligned_cols=190 Identities=42% Similarity=0.703 Sum_probs=185.7
Q ss_pred hhhHHHHHHHHHhhcChhhhHHHHHHCCCCCCChHHHHHHHHhcCCCChHHHHhhhcCC-CChHHHHHHHHHHcCCCCCC
Q 000257 586 AHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQH-EEFPVAVMHAYVDSMKFSGM 664 (1774)
Q Consensus 586 ~~K~~~~~~i~~FN~~pkkGi~~L~~~g~i~~~p~~iA~fL~~~~~Ldk~~iGeyLg~~-~~~~~~vl~~yv~~~dF~~~ 664 (1774)
.+|+.+..|..+||.||.|||+||++.||++++|..+|+||+...||+|.|||||||.. ++||..||+.+||.|||++|
T Consensus 196 ~~kr~YriGlnlfn~kPekGvQ~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfssm 275 (627)
T KOG0931|consen 196 RRKRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSM 275 (627)
T ss_pred HHHHHhhhccchhcCCcchhhhhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhccccc
Confidence 47899999999999999999999999999999999999999999999999999999986 68999999999999999999
Q ss_pred ChhHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhCCC---CCCChhHHHHHHHHHHHhhcCCCCCCCC--CCCCHhHH
Q 000257 665 KFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPG---LFKNADTAYVLAYSVILLNTDAHNPMVW--PKMTKSDF 739 (1774)
Q Consensus 665 ~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~~~Np~---~f~s~d~~yvLaysiimLnTDlHn~~vk--~kmt~~~F 739 (1774)
.+|+|||+|...||+|||||||||++|+||.|||.|||. -|.|.|++|+|||+|||||||+|+|+|| .||+.+||
T Consensus 276 elDeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~leDF 355 (627)
T KOG0931|consen 276 ELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLEDF 355 (627)
T ss_pred hHHHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHHHH
Confidence 999999999999999999999999999999999999998 4899999999999999999999999999 79999999
Q ss_pred HhhhccCCCCccccHHHHHHHHHHhhcccccccchh
Q 000257 740 VRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDV 775 (1774)
Q Consensus 740 i~~n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e~ 775 (1774)
|+|-||.|+|.|+|+|.|.+||++|++.|++-.+++
T Consensus 356 ikNLRGvDnGeDIpRell~GIYeRIqk~ELktndDH 391 (627)
T KOG0931|consen 356 IKNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDH 391 (627)
T ss_pred HHhccCCCCcccCcHHHHHHHHHHHHHhhcccCcch
Confidence 999999999999999999999999999999999988
No 11
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-30 Score=307.73 Aligned_cols=680 Identities=18% Similarity=0.262 Sum_probs=453.2
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhhccCCccchhhhhHHHHHHHHhhhccCCChhhhhHHHHHHHH
Q 000257 866 NKPRVALCMEGFKAGIHITQVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLALCDTEPDSLQDTWNAVLECV 945 (1774)
Q Consensus 866 d~~~i~~cLeGf~~~i~ia~~~~l~~~Rdafi~sL~kft~L~~~~em~~KNv~alr~LL~lA~~~Gn~L~~SW~~IL~~i 945 (1774)
..+.+....-|+|.-..++..+++..-..-.-.- .-++.|..+.|.....-|.+-.+.|+++.+..
T Consensus 679 eREAiepSdagmqnkcaVaQkLelegkcggifeh--------------laetlCceadLrddaeaGshnddcqkhtcrsc 744 (1777)
T KOG1846|consen 679 EREAIEPSDAGMQNKCAVAQKLELEGKCGGIFEH--------------LAETLCCEADLRDDAEAGSHNDDCQKHTCRSC 744 (1777)
T ss_pred HhhhcChHHHHHHHHHHHHHHHhhhhhhhHHHHH--------------HHHHHHHHHHhhchhhhcCCCCccccccchHH
Confidence 3344555566777777777777665443332222 23667888888888888999899999998876
Q ss_pred HHhHHhhcC--------CCcc-----------cccccC------CC-c-----------------------cchhH----
Q 000257 946 SRLEFIMST--------PAIS-----------ATVMLG------SN-Q-----------------------ISKDA---- 972 (1774)
Q Consensus 946 sqLe~l~~~--------P~~~-----------~~~~~~------s~-~-----------------------~s~~~---- 972 (1774)
..+-.++.. |..+ ....-| ++ . .++++
T Consensus 745 EhlgalehnhdeagaaihalscskcseqkaegeagilGdaeCeekPpehkferqgredkeadkeeklsaaDlsiEgalGd 824 (1777)
T KOG1846|consen 745 EHLGALEHNHDEAGAAIHALSCSKCSEQKAEGEAGILGDAECEEKPPEHKFERQGREDKEADKEEKLSAADLSIEGALGD 824 (1777)
T ss_pred HHHHHHHhhcccccccCCccchhccchhhhhccccccCChhhcCCCcccChhhcCcccccccccccccHHhhhhccccCC
Confidence 555333311 1000 000000 00 0 00000
Q ss_pred --------HH--HHHH---HhhCCchhhhhhcC-CCCChhHHHHHHHHHHhhcHHhhhcC----------CC--------
Q 000257 973 --------VV--QSLK---ELAGKPAEQVFVNS-VKLPSDSIVEFFNALCGVSAEELRQT----------PA-------- 1020 (1774)
Q Consensus 973 --------~~--~sl~---e~~~~~id~IF~~S-~~Ls~eAiv~Fv~ALc~vS~eEl~~s----------~p-------- 1020 (1774)
++ .+.. ..+...+||+|+.. ..|...|+.+|.-++.+.|...+..+ -|
T Consensus 825 apdfrggslmSghSaakaictLiakaDRffedacdeLcLmALgdfcvaiikaSenqlFhsvTaqkdihLaaPgevkstqd 904 (1777)
T KOG1846|consen 825 APDFRGGSLMSGHSAAKAICTLIAKADRFFEDACDELCLMALGDFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQD 904 (1777)
T ss_pred CcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHhhhcceeeeeccceeeEeecCcccccchh
Confidence 00 0000 11223579999864 78999999999999999998877642 12
Q ss_pred c--cchHHHHHHHHh---hcccccccchHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHh-hhhhhcchhhHH
Q 000257 1021 R--VFSLQKLVEISY---YNMARIRMVWARIWSVLANHFISA-GSHHDEKIAMYAIDSLRQLSMKYL-ERAELTNFTFQN 1093 (1774)
Q Consensus 1021 r--~FsLqKLvEVa~---~Nm~Rirl~W~~IW~vl~~hf~~v-g~~~n~~va~~AiDsLrQLs~kfL-e~eEL~~f~fQ~ 1093 (1774)
| ...|.||.+... ....|..++-..+|..++.||+++ +||....|+..|+..+..+..+.| ...|-++|+|.+
T Consensus 905 rksalhLfRigdaiirilrhkaRPLlHqMfcwpLVaaHfVeasaCdkErhvSqiAaSaiadilTelLtdwnEpPgfhFNe 984 (1777)
T KOG1846|consen 905 RKSALHLFRIGDAIIRILRHKARPLLHQMFCWPLVAAHFVEASACDKERHVSQIAASAIADILTELLTDWNEPPGFHFNE 984 (1777)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccchhHHHHHHhhhhHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhH
Confidence 2 366788887322 223488899999999999999999 899988999999999999988887 568899999999
Q ss_pred hhhhhHHHHHhc-CchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchh----HHHH---------HHHHHH
Q 000257 1094 DILKPFVVLIRN-SRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEV----ESIV---------ESAFEN 1159 (1774)
Q Consensus 1094 ~fLkPFe~im~~-s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~----e~iV---------~~AF~~ 1159 (1774)
.++.||+.+|+. +|+.|+++++|..|.++|+.+++.|.||||++|+.|.+...... +.++ .-+|++
T Consensus 985 aLfgPFeramclElCdEdtkdQflsSigeLVescadkIgSGWkPLFgaLeaVgggnksemkaaldedysmgKghacafDV 1064 (1777)
T KOG1846|consen 985 ALFGPFERAMCLELCDEDTKDQFLSSIGELVESCADKIGSGWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDV 1064 (1777)
T ss_pred hhhchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHH
Confidence 999999999975 79999999999999999999999999999999999999864321 1222 357888
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHhccC-----------------cccchHHHHHhHHHHHHHhhcccCCCCCCCC
Q 000257 1160 VEQVILEHFDQVVGDCFMDCVNCLIRFANNKT-----------------SHRISLKAIALLRICEDRLAEGLIPGGDLKP 1222 (1774)
Q Consensus 1160 l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~-----------------d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~ 1222 (1774)
++..++.....+..++...||.||.+|.++.. ..++.|.|+.+|.+|+..++..+. .+.+|
T Consensus 1065 feafLniDnipVfanaalecimClmkflkgleevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYk--mPhkP 1142 (1777)
T KOG1846|consen 1065 FEAFLNIDNIPVFANAALECIMCLMKFLKGLEEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYK--MPHKP 1142 (1777)
T ss_pred HHHHhccCchHhHHHHHHHHHHHHHHHHhcccccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHc--CCCch
Confidence 87766655556667899999999999999765 245789999999999988875321 11111
Q ss_pred -------------------CCC---ccc----------CccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 000257 1223 -------------------IDV---ETD----------ATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNE 1270 (1774)
Q Consensus 1223 -------------------~~~---~~~----------~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~ 1270 (1774)
.+. +.. ...-.-..+|+.+|..+.....++.+.-++.-+..+|++|..
T Consensus 1143 ifhlghladLprkcldqsamdeDgIEsphgpfpvledfdddiagiElfiiflEQicaallncppnhQknlLDlifeLLrD 1222 (1777)
T KOG1846|consen 1143 IFHLGHLADLPRKCLDQSAMDEDGIESPHGPFPVLEDFDDDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRD 1222 (1777)
T ss_pred hhhhhhhhcchHHHHhhhhcccCCccCCCCCccccccccccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHH
Confidence 000 000 111124579999999999999999999999999999999998
Q ss_pred ccCC-CCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHH--HHHHHHHHHHHHHHHH-------------HHHHH
Q 000257 1271 RGSK-FSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRE--TSIHSLQLLCNLFNTF-------------YKEVC 1334 (1774)
Q Consensus 1271 ~G~~-f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~e--T~~~aL~~lv~LF~~y-------------f~~l~ 1334 (1774)
-..+ ++++|.-.+...+|+|.++.|..+.+ .++..|--. ...||+..-+.+...+ ...++
T Consensus 1223 iskkPlGadfGgvamsaliLPvmqkWiRRld----kdesywdmakaifKhaIGaccelVidhielekhSswddRlerdIc 1298 (1777)
T KOG1846|consen 1223 ISKKPLGADFGGVAMSALILPVMQKWIRRLD----KDESYWDMAKAIFKHAIGACCELVIDHIELEKHSSWDDRLERDIC 1298 (1777)
T ss_pred hccCCCCCCCccchhhHHHHHHHHHHHHHhc----hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 7654 48888889999999999999875543 235667322 3456665555554433 33455
Q ss_pred HhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCCCCCHhhHHHHHHHHHHHHhhcCchh-hhhhcccccchhcccc
Q 000257 1335 FMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDASYTTQPLE-LLNENLKNVTVVIRDS 1413 (1774)
Q Consensus 1335 ~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~~~~~f~~~~W~~i~~~~~~~~~~t~p~~-l~~~~~~~~~~~~~~~ 1413 (1774)
.|+.+.+.++..|...+.+.+.++|++|++..+...|++|++++|+..|.++.++|..|+-+- ++..-- ..
T Consensus 1299 alikdcfefdkaCaaaPaefiliagcsciryvlvtagpkFseemWniaccaLadAfsasLkhVkdLlgcF-hr------- 1370 (1777)
T KOG1846|consen 1299 ALIKDCFEFDKACAAAPAEFILIAGCSCIRYVLVTAGPKFSEEMWNIACCALADAFSASLKHVKDLLGCF-HR------- 1370 (1777)
T ss_pred HHHHHHHHHHHHHhhCcHHHHHHhhcchheeeeeccCccccHHHHHHHHHHHHHHHHhhhHHHHHHHhHh-hc-------
Confidence 678888899999999999999999999999999999999999999999999999998886432 221000 00
Q ss_pred ccCCCCCCCCCCCcCCCC-CcccCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCccchhhhhhhcccc
Q 000257 1414 EVGAGEADNNQFGVSDNG-KVSTLSSPTIGADGTPRNLNTPFSLDHNQEAGLHLDGSEGVPSPSGRAQKTTEAFQRNQSI 1492 (1774)
Q Consensus 1414 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1492 (1774)
.+.+.+..| .+. ...++..+....+. +..
T Consensus 1371 ---------gsedenGdgcqig-------------------------------------daapSsnPgaeaer-qlI--- 1400 (1777)
T KOG1846|consen 1371 ---------GSEDENGDGCQIG-------------------------------------DAAPSSNPGAEAER-QLI--- 1400 (1777)
T ss_pred ---------CCcccCCCcceec-------------------------------------cccCCCCchHHHHH-HHH---
Confidence 000000000 000 00001010011111 111
Q ss_pred ccccccccchhhh-hccccccCCCC-CCCCCCCCCCC----CCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 000257 1493 GQKIMGNMMDNRF-LRSFTSKSKSQ-VPDASIPSSSP----KLPDAVEPDAKDEEESPIWATIRGKCITQLLLLSAIDSI 1566 (1774)
Q Consensus 1493 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~kcv~qLlli~~~~~l 1566 (1774)
..|.... .. +++-++ .|....+++.. .++..+.|..-+. .+-.|..|++-=.-.-+|+|.|-+|
T Consensus 1401 ------aAmaqlsfmk---dkqcgpkkpeeeDhaqgcaLIielhgadkpnghtk-hrlefheIisSLfsHclLLQliadi 1470 (1777)
T KOG1846|consen 1401 ------AAMAQLSFMK---DKQCGPKKPEEEDHAQGCALIIELHGADKPNGHTK-HRLEFHEIISSLFSHCLLLQLIADI 1470 (1777)
T ss_pred ------HHHHHHHHHH---hhccCCCCCcchhhhhcceeeEecCCccCCCCccc-ceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11 000011 11111110000 0111222322222 3334555555433333344555555
Q ss_pred -----------------------HHHHhccCCHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHhhhC-CCCCCCCchhhhh
Q 000257 1567 -----------------------QRKYWGKLKAPQKIAIMDILLSLLEFSASYNSYSNLRMRMHHI-PAERPPLNLLRQE 1622 (1774)
Q Consensus 1567 -----------------------~~~~~~~l~~~~l~~l~~~l~~s~~fA~~fN~d~~lR~~L~~~-~~~~~~PNLLkQE 1622 (1774)
..+|.++|.-+.+-.|.|+|.+||+-|++|.+...|--.|-|. |+++.. |||||-
T Consensus 1471 LLeEdskgPklgaekigqtpeadlagflryiddqilaiifdiLldSseTaldFDsrPalgcLLkkmlGiggaA-NLlkas 1549 (1777)
T KOG1846|consen 1471 LLEEDSKGPKLGAEKIGQTPEADLAGFLRYIDDQILAIIFDILLDSSETALDFDSRPALGCLLKKMLGIGGAA-NLLKAS 1549 (1777)
T ss_pred HHHhhccCCCCCccccccCCCcchhhHHHhcchhHHHHHHHHHhhhhhhhhccCCCccHHHHHHHHhccchHH-HHHHHH
Confidence 2489999999999999999999999999999999999999997 666654 999997
Q ss_pred hhHHHHHHHHHH
Q 000257 1623 LAGTSIYLDILQ 1634 (1774)
Q Consensus 1623 t~s~a~~l~il~ 1634 (1774)
.-+..+|..-|-
T Consensus 1550 alsfnilfhals 1561 (1777)
T KOG1846|consen 1550 ALSFNILFHALS 1561 (1777)
T ss_pred HHHHHHHHHHHH
Confidence 777766655444
No 12
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.97 E-value=1.2e-31 Score=292.90 Aligned_cols=155 Identities=41% Similarity=0.654 Sum_probs=145.3
Q ss_pred ChhhhHHHHHHHHHHhccCCCCCch-------hhhhhhHHHHHHHHHHHhcCCcccc---CChhhHHHHHHHHHHHHHHh
Q 000257 340 SIGQQDALLVFRTLCKMGMKEDSDE-------VTTKTRILSLELLQGLLEGVSHSFT---KNFHFIDSIKAYLSYALLRA 409 (1774)
Q Consensus 340 ~~~~kDa~lvFr~LC~Ls~k~~~~~-------~~~rsk~lsLeLl~~iL~~~~~~f~---~~~~f~~~ik~~Lc~~Llrn 409 (1774)
+.+++||++|||+||+|++|+.+.+ +..++|++|||||+++|+++|+.|. +|+.|++++|++||++|++|
T Consensus 2 ~~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~ 81 (168)
T PF12783_consen 2 NYYVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKN 81 (168)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999997765542 4779999999999999999999999 55599999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhcCCCCC--hhhHHHHHHHHHHHhcCchHHHHHHHhcCCC
Q 000257 410 SVSQSSVIFQYATGIFSVLLLRFRESLKGEIGVFFPLIVLRSLDGSD--NNQKTSVLRMIDKVCKDPQMLVDVYVNYDCD 487 (1774)
Q Consensus 410 ~~S~~~~vF~lsl~if~~Ll~~~r~~Lk~Eievfl~~i~l~~Le~s~--~~qK~~~Le~l~~lc~dp~~lvdiy~NYDCd 487 (1774)
+.++.+++|..++|||++|+.+||.+||.|+|+||+.|+++++++++ +|||+++||+++++|++|++++|+|+|||||
T Consensus 82 ~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYDCd 161 (168)
T PF12783_consen 82 LSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVNYDCD 161 (168)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHcCCC
Confidence 99988999999999999999999999999999999999999998754 8999999999999999999999999999999
Q ss_pred CCCccHH
Q 000257 488 LEAPNLF 494 (1774)
Q Consensus 488 ~~~~nif 494 (1774)
.+++|||
T Consensus 162 ~~~~nif 168 (168)
T PF12783_consen 162 LNSKNIF 168 (168)
T ss_pred CCCCCCC
Confidence 9999987
No 13
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.1e-26 Score=267.85 Aligned_cols=156 Identities=33% Similarity=0.519 Sum_probs=149.9
Q ss_pred hHHHHHHHHhcCCCChHHHHhhhcCCCChHHHHHHHHHHcCCCCCCChhHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Q 000257 619 PTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYC 698 (1774)
Q Consensus 619 p~~iA~fL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~~i~~ALR~fL~~frLPgEaQ~IdRime~Fa~ry~ 698 (1774)
...+|+-|+..++.-|..+..|||++++|+.-|..+|+..|+|+||++|.|||.||+.|-|-||.|.-+|++-.|+.|||
T Consensus 307 A~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~ 386 (774)
T KOG0932|consen 307 AARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYF 386 (774)
T ss_pred HHHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCChhHHHHHHHHHHHhhcCCCCCCCCCCCCHhHHHhhhccCCCCccccHHHHHHHHHHhhcccccccch
Q 000257 699 ADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDD 774 (1774)
Q Consensus 699 ~~Np~~f~s~d~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~~n~~~d~~~~lp~e~L~~iY~~I~~~ei~l~~e 774 (1774)
.|||++|.+.|.++.|.++|++||||||.++|.+|||.++||.|-.|.++|.|||.|+|..+|++|+++.+.+.-+
T Consensus 387 ~CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKneklewAid 462 (774)
T KOG0932|consen 387 QCNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLEWAID 462 (774)
T ss_pred ccCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhhhccC
Confidence 9999999999999999999999999999999999999999999988999999999999999999999997766543
No 14
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.84 E-value=1.2e-21 Score=190.13 Aligned_cols=86 Identities=48% Similarity=0.843 Sum_probs=83.8
Q ss_pred HHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHH
Q 000257 1078 MKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAF 1157 (1774)
Q Consensus 1078 ~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF 1157 (1774)
|||++++||+||+||++||+||+.+|.++++.+||++||+||.+||+++|++|+|||++||++|+.++.+.++++|..||
T Consensus 1 ~kfl~~~El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af 80 (86)
T PF09324_consen 1 MKFLEKEELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAF 80 (86)
T ss_pred CCccccccccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000257 1158 ENVEQV 1163 (1774)
Q Consensus 1158 ~~l~~I 1163 (1774)
+++++|
T Consensus 81 ~~~~~I 86 (86)
T PF09324_consen 81 QIVQLI 86 (86)
T ss_pred HHHhhC
Confidence 999865
No 15
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.52 E-value=0.72 Score=66.91 Aligned_cols=359 Identities=14% Similarity=0.248 Sum_probs=197.2
Q ss_pred hHHHHHHHHHhhhccCCccchhh---hhHHHHHHHHhhhccCCChhhhhHHHHHHHHHHhHHhhcCCCcccccccCCCcc
Q 000257 892 MRYAFLTSLVRFTFLHAPKEMRS---KNVEALRTLLALCDTEPDSLQDTWNAVLECVSRLEFIMSTPAISATVMLGSNQI 968 (1774)
Q Consensus 892 ~Rdafi~sL~kft~L~~~~em~~---KNv~alr~LL~lA~~~Gn~L~~SW~~IL~~isqLe~l~~~P~~~~~~~~~s~~~ 968 (1774)
..-.|+.+||+.+ ..|+.. --+-++.-|++||..+-+-.+--|..|+..++.. +... |.+..
T Consensus 1086 ai~~fv~AL~~vS----~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~h--f~~v---------g~~~n 1150 (1780)
T PLN03076 1086 AIIDFVKALCKVS----MEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDF--FVTI---------GCSEN 1150 (1780)
T ss_pred HHHHHHHHHHHhh----HHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHH--HHHh---------cCCcc
Confidence 3445888998764 234432 2467899999999999888888999999888763 2211 11100
Q ss_pred chhH--HHHHHHHhhCCchhhhhhcCCCCChhHHH-HHHHHHHhhcHHhhhcCCCccchHHHHHHHHhhcccccccchHH
Q 000257 969 SKDA--VVQSLKELAGKPAEQVFVNSVKLPSDSIV-EFFNALCGVSAEELRQTPARVFSLQKLVEISYYNMARIRMVWAR 1045 (1774)
Q Consensus 969 s~~~--~~~sl~e~~~~~id~IF~~S~~Ls~eAiv-~Fv~ALc~vS~eEl~~s~pr~FsLqKLvEVa~~Nm~Rirl~W~~ 1045 (1774)
..-. ...++..+ .-+.+ ....|++-.+. +|++.+..+=.. .....-|-+-|+.+..+....-+.|+--|..
T Consensus 1151 ~~va~fAidsLrQL----s~kfl-e~eEL~~f~FQkefLkPfe~im~~-s~~~eVrE~ILeCv~qmI~s~~~nIkSGWkt 1224 (1780)
T PLN03076 1151 LSIAIFAMDSLRQL----SMKFL-EREELANYNFQNEFMKPFVIVMRK-SNAVEIRELIIRCVSQMVLSRVNNVKSGWKS 1224 (1780)
T ss_pred hhHHHHHHHHHHHH----HHHhc-chhhhhchhHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhcCcHH
Confidence 0000 01111111 12223 23344444444 566665543211 0111223455665555555555677777777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-hhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHH----HHH
Q 000257 1046 IWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLE-RAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVD----CIV 1120 (1774)
Q Consensus 1046 IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe-~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~----cL~ 1120 (1774)
|+.+++ .++..+++.++..|.+++.++...|+. ..++..-.|+ +.+.-|...-.+..+.+|-...++ |..
T Consensus 1225 IF~VLs----~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~-DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076 1225 MFMVFT----TAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT-DCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred HHHHHH----HHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH-HHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence 776665 445567788999999999998888774 1221112232 222222211111111222222222 222
Q ss_pred HHHHhc--------------------------------cCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhh
Q 000257 1121 QMIKSK--------------------------------VGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHF 1168 (1774)
Q Consensus 1121 qmI~~~--------------------------------~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~ 1168 (1774)
.+++.. .+.+...|-+++.-|.....|+...+=..|.+++-.|+..|=
T Consensus 1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 222211 001114699999999888888888888888888888887765
Q ss_pred hhhhhh----hHHHHHHHHHHHHhccC--------------------cc--cchHHHHHhHHHHHHHhhcccCCCCCCCC
Q 000257 1169 DQVVGD----CFMDCVNCLIRFANNKT--------------------SH--RISLKAIALLRICEDRLAEGLIPGGDLKP 1222 (1774)
Q Consensus 1169 ~~l~~~----~f~dlI~cL~~F~~q~~--------------------d~--nISL~AI~lLw~~~d~L~~~~~~~~~~~~ 1222 (1774)
..++.+ +|..++--+..-.+... +. -++-+.+-.|+.+.+-+..-
T Consensus 1380 ~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~f--------- 1450 (1780)
T PLN03076 1380 HLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKF--------- 1450 (1780)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH---------
Confidence 555543 34433333333222110 00 02223333444444433221
Q ss_pred CCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHH
Q 000257 1223 IDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDH 1294 (1774)
Q Consensus 1223 ~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~ 1294 (1774)
.+....+--.+|.-|..++..+...+-.-++..|-+++...|..|+++.|+.|+. .+--+|+.
T Consensus 1451 --------Fd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~-~~~~lf~~ 1513 (1780)
T PLN03076 1451 --------YPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVL-SLKEAANA 1513 (1780)
T ss_pred --------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-HHHHHHHH
Confidence 1111223333455555566667778999999999999999999999999999995 45566665
No 16
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=8.2 Score=53.04 Aligned_cols=248 Identities=17% Similarity=0.265 Sum_probs=142.8
Q ss_pred hhHHHHHhc--CchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000257 1097 KPFVVLIRN--SRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGD 1174 (1774)
Q Consensus 1097 kPFe~im~~--s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~ 1174 (1774)
.||+.++.. +++.++|...=+.+..+-..-. .........+...++.+-..|==.+++++..++..+..+
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 455555543 5666777776666654322211 333333333333334444444444556666677777654
Q ss_pred hHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCH
Q 000257 1175 CFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRP 1254 (1774)
Q Consensus 1175 ~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~ 1254 (1774)
.-..+-.-|..-........|..+--+. +..++.+.+| .-|--||.-|-...+++.+
T Consensus 76 ~~~siks~lL~~~~~E~~~~vr~k~~dv----iAeia~~~l~-------------------e~WPell~~L~q~~~S~~~ 132 (1075)
T KOG2171|consen 76 VQQSIKSSLLEIIQSETEPSVRHKLADV----IAEIARNDLP-------------------EKWPELLQFLFQSTKSPNP 132 (1075)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHH----HHHHHHhccc-------------------cchHHHHHHHHHHhcCCCc
Confidence 3333222222211112222232221111 1112221111 1598899999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHH---HHHHH
Q 000257 1255 EVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLF---NTFYK 1331 (1774)
Q Consensus 1255 EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF---~~yf~ 1331 (1774)
..|..|+-+|+.+....|..+.+. -..+.|+|..-.... +.. ..-+..+|+..++... +.-.+
T Consensus 133 ~~rE~al~il~s~~~~~~~~~~~~------~~~l~~lf~q~~~d~------s~~--vr~~a~rA~~a~~~~~~~~~~~~~ 198 (1075)
T KOG2171|consen 133 SLRESALLILSSLPETFGNTLQPH------LDDLLRLFSQTMTDP------SSP--VRVAAVRALGAFAEYLENNKSEVD 198 (1075)
T ss_pred chhHHHHHHHHhhhhhhccccchh------HHHHHHHHHHhccCC------cch--HHHHHHHHHHHHHHHhccchHHHH
Confidence 999999999999999999999872 234557776543211 122 3555566666555544 33445
Q ss_pred HHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCCCCCHhhHHHHHHHHHHHH
Q 000257 1332 EVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDAS 1390 (1774)
Q Consensus 1332 ~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~~~~~f~~~~W~~i~~~~~~~~ 1390 (1774)
.+..++|.++..+..+|+..++.-|.-...+|-.|+... +||-..+...|+...-.++
T Consensus 199 ~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~-pk~l~~~l~~ii~~~l~Ia 256 (1075)
T KOG2171|consen 199 KFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE-PKLLRPHLSQIIQFSLEIA 256 (1075)
T ss_pred HHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHh
Confidence 566789999999999999999888888888887777654 3444445555554444333
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.22 E-value=16 Score=47.41 Aligned_cols=318 Identities=14% Similarity=0.135 Sum_probs=173.1
Q ss_pred CccchHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhH
Q 000257 1020 ARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPF 1099 (1774)
Q Consensus 1020 pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPF 1099 (1774)
..-+.+.||+-++...+. -.++...-.+.+++.+=-.|+|+.++-.|+..|-.+... | .-..++.+.
T Consensus 53 s~~~~~Krl~yl~l~~~~---~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-----~-----~~~~l~~~v 119 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYL---HEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP-----E-----MAEPLIPDV 119 (526)
T ss_dssp SSSHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH-----H-----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc-----c-----hhhHHHHHH
Confidence 455778888777654433 234556677888888888899999998888888766522 2 224455555
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHH-Hhhhh-hhhhhh---
Q 000257 1100 VVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQV-ILEHF-DQVVGD--- 1174 (1774)
Q Consensus 1100 e~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I-~~d~~-~~l~~~--- 1174 (1774)
..++. ++++.||...+-|+.++.+...+.+..+| +..+.....|++..++..|...+..| ..+.. ..+...
T Consensus 120 ~~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~ 195 (526)
T PF01602_consen 120 IKLLS-DPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIR 195 (526)
T ss_dssp HHHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHH
T ss_pred HHHhc-CCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHH
Confidence 55554 56779999999999999999888776664 66666666777777888888777766 22211 011111
Q ss_pred ------------hHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHH
Q 000257 1175 ------------CFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPML 1242 (1774)
Q Consensus 1175 ------------~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL 1242 (1774)
....++.+|..++.......-. -.++..+...+.... +...+... ..-........++-.+.
T Consensus 196 ~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~-~~V~~e~~--~~i~~l~~~~~~~~~~~ 269 (526)
T PF01602_consen 196 ILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSS-PSVVYEAI--RLIIKLSPSPELLQKAI 269 (526)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHSSSHHHHHHHH
T ss_pred HhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccc-cHHHHHHH--HHHHHhhcchHHHHhhH
Confidence 1112223333332211100000 011111111111000 00000000 00000000123677778
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHH
Q 000257 1243 AGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLL 1322 (1774)
Q Consensus 1243 ~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~l 1322 (1774)
..|.++..+++++||--|+++|-.+...+ +..++ . ...++..++... + ......++..+
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--------~~~v~-~-~~~~~~~l~~~~--------d---~~Ir~~~l~lL 328 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSN--------PPAVF-N-QSLILFFLLYDD--------D---PSIRKKALDLL 328 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHC--------HHHHG-T-HHHHHHHHHCSS--------S---HHHHHHHHHHH
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhccc--------chhhh-h-hhhhhheecCCC--------C---hhHHHHHHHHH
Confidence 88888888999999999999998888876 22333 1 222233333211 1 23455566655
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhCCCCCHhhHHHHHHHHHHHHhh
Q 000257 1323 CNLFNTFYKEVCFMLPPLLSLLLDCAK-KPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDASYT 1392 (1774)
Q Consensus 1323 v~LF~~yf~~l~~~L~~~l~lL~~ci~-q~n~~ia~ig~~~L~~Li~~~~~~f~~~~W~~i~~~~~~~~~~ 1392 (1774)
..+-+. .-...++.-|..++. .....+.+-.+..+..+.... ....+.+++.+.+++..
T Consensus 329 ~~l~~~------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~-----~~~~~~~v~~l~~ll~~ 388 (526)
T PF01602_consen 329 YKLANE------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF-----PPDAEWYVDTLLKLLEI 388 (526)
T ss_dssp HHH--H------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-----GSSHHHHHHHHHHHHHC
T ss_pred hhcccc------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc-----CchHHHHHHHHHHhhhh
Confidence 555443 123445555666663 335557777777777766665 44455567777776644
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=21 Score=49.41 Aligned_cols=277 Identities=17% Similarity=0.254 Sum_probs=169.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHH
Q 000257 1058 GSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSV 1137 (1774)
Q Consensus 1058 g~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~I 1137 (1774)
+...++.+|.+|.--+|+|..|+-.+ ++ -.-|..+...+..++.+.+...||..+-+.+..+-..-.+. +|+-+
T Consensus 46 ~~~~~p~~Rq~aaVl~Rkl~~~~w~~--l~-~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPel 119 (1075)
T KOG2171|consen 46 ATSADPQVRQLAAVLLRKLLTKHWSR--LS-AEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPEL 119 (1075)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHhhc--CC-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHH
Confidence 45667899999999999999986433 22 13566777777777777788889999888888876665554 89999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCC
Q 000257 1138 FMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPG 1217 (1774)
Q Consensus 1138 F~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~ 1217 (1774)
...|-.+..++++++=+.||-++..+... |+.-....+.++...+.+=- +.....|-..|+.-+-..+.++...
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~-~~~~~~~~~~~l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~~~~~~---- 193 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPET-FGNTLQPHLDDLLRLFSQTM-TDPSSPVRVAAVRALGAFAEYLENN---- 193 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhh-hccccchhHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHhccc----
Confidence 99999999988888888899887654432 22211122223333332211 1122225455555555555554210
Q ss_pred CCCCCCCCcccCccchhhhhHHH-HHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhh
Q 000257 1218 GDLKPIDVETDATFDVTEHFWFP-MLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVR 1296 (1774)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~lW~p-LL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~ 1296 (1774)
....+ ..+--+| ++..+.+++.+.+-+.-..++..|-+++.+-+..|++. +..||-=.+....
T Consensus 194 ----------~~~~~-~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~-----l~~ii~~~l~Ia~ 257 (1075)
T KOG2171|consen 194 ----------KSEVD-KFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPH-----LSQIIQFSLEIAK 257 (1075)
T ss_pred ----------hHHHH-HHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHH-----HHHHHHHHHHHhh
Confidence 00001 1123455 88888888888888888999999998888777655542 2222222222221
Q ss_pred hhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHhhcCC----------------ChhHH
Q 000257 1297 HAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVC----FMLPPLLSLLLDCAKKP----------------DQSVV 1356 (1774)
Q Consensus 1297 ~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~----~~L~~~l~lL~~ci~q~----------------n~~ia 1356 (1774)
. ++--..++..||..++.+-.. =...+ ...+.+.-.+..+++.. .++.+
T Consensus 258 n----------~~l~~~~R~~ALe~ivs~~e~-Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~ 326 (1075)
T KOG2171|consen 258 N----------KELENSIRHLALEFLVSLSEY-APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPY 326 (1075)
T ss_pred c----------ccccHHHHHHHHHHHHHHHHh-hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcH
Confidence 1 111145567777777754333 11111 23445556666666621 24679
Q ss_pred HHHHHHHHHHHHHhCCC
Q 000257 1357 SISLGALVHLIEVGGHQ 1373 (1774)
Q Consensus 1357 ~ig~~~L~~Li~~~~~~ 1373 (1774)
++|..++-+|-...|++
T Consensus 327 ~~A~~~lDrlA~~L~g~ 343 (1075)
T KOG2171|consen 327 RAAEQALDRLALHLGGK 343 (1075)
T ss_pred HHHHHHHHHHHhcCChh
Confidence 99999999988886544
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.41 E-value=56 Score=42.45 Aligned_cols=296 Identities=15% Similarity=0.194 Sum_probs=168.5
Q ss_pred hHHHHHHHHHHhhcHHhhhcCCCccchHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000257 998 DSIVEFFNALCGVSAEELRQTPARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLS 1077 (1774)
Q Consensus 998 eAiv~Fv~ALc~vS~eEl~~s~pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs 1077 (1774)
..+..+++.||.+- ..+.-|...+++.+... ..+....-..- ..+-+.+.....+.+..|++.|+..+-.+.
T Consensus 188 ~~~~~~~~~L~~~l------~~~~~~~q~~il~~l~~-~~~~~~~~~~~-~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 188 SLIPKLIRILCQLL------SDPDPWLQIKILRLLRR-YAPMEPEDADK-NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp THHHHHHHHHHHHH------TCCSHHHHHHHHHHHTT-STSSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHhhhcc------cccchHHHHHHHHHHHh-cccCChhhhhH-HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 45666777777652 23444555555555431 11111000000 122233333333556778777777765332
Q ss_pred HHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHH
Q 000257 1078 MKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAF 1157 (1774)
Q Consensus 1078 ~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF 1157 (1774)
. . ...-..+..++..++. +.+..+|-.+|++|.+++......+. ....++..+. .+++..+...+.
T Consensus 260 ~----~-----~~~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~---~~~d~~Ir~~~l 325 (526)
T PF01602_consen 260 P----S-----PELLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL---YDDDPSIRKKAL 325 (526)
T ss_dssp S----S-----HHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH---CSSSHHHHHHHH
T ss_pred c----c-----hHHHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcccchhhh-hhhhhhheec---CCCChhHHHHHH
Confidence 1 1 1134566777777776 77888999999999999988755556 3333333222 355677888898
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhh
Q 000257 1158 ENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHF 1237 (1774)
Q Consensus 1158 ~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 1237 (1774)
+.+..+++ ..++..+++.|.+|++...+..+.-.++..+..|+...... .-
T Consensus 326 ~lL~~l~~-------~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~----------------------~~ 376 (526)
T PF01602_consen 326 DLLYKLAN-------ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD----------------------AE 376 (526)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS----------------------HH
T ss_pred HHHhhccc-------ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch----------------------HH
Confidence 88876665 36677788889999866656667777777777776665321 12
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHH
Q 000257 1238 WFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIH 1317 (1774)
Q Consensus 1238 W~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~ 1317 (1774)
|+ +..+-++.......|+..+++.+.+++..+...- . .++.-+++.+..... .+
T Consensus 377 ~~--v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----~----~~l~~L~~~l~~~~~-----------~~---- 430 (526)
T PF01602_consen 377 WY--VDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----E----KILKKLIELLEDISS-----------PE---- 430 (526)
T ss_dssp HH--HHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----H----HHHHHHHHHHTSSSS-----------HH----
T ss_pred HH--HHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----H----HHHHHHHHHHHHhhH-----------HH----
Confidence 32 2333344443445678888888888877654321 1 123333444332111 11
Q ss_pred HHHHHHHHHHHHHHHHHH--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 000257 1318 SLQLLCNLFNTFYKEVCF--MLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVG 1370 (1774)
Q Consensus 1318 aL~~lv~LF~~yf~~l~~--~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~~ 1370 (1774)
++..++-++..|-+.... ..++++..+..-...++..+-....+++-.+....
T Consensus 431 ~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 431 ALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRN 485 (526)
T ss_dssp HHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhC
Confidence 344455566666655544 56677777777777777666666666666666553
No 20
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.52 E-value=59 Score=42.81 Aligned_cols=323 Identities=19% Similarity=0.248 Sum_probs=160.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---HHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHH
Q 000257 1047 WSVLANHFISAGSHHDEKIAMYAIDSLRQLSM---KYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMI 1123 (1774)
Q Consensus 1047 W~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~---kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI 1123 (1774)
|.-+-+-+.++-..++...-.-|++.|.+++. .+++.+=+ -++-+-++--|...+ .++++.||...+.|+.|+|
T Consensus 126 wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~--~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 126 WPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVL--TRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred chhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcc--cCchHHhHHHHHHHH-hCCChhHHHHHHhhhhhee
Confidence 34444444444444443333457777776643 34433221 112222222233333 3569999999999999998
Q ss_pred HhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhH
Q 000257 1124 KSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALL 1203 (1774)
Q Consensus 1124 ~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lL 1203 (1774)
-.+.+.+--.=.+-++.+-+-|.|+++.+-+.--..+-.+..-+.+.+.+ .....|.- .-...|..|.++++.|-++.
T Consensus 203 ~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~Ivey-ML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 203 IIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEY-MLQRTQDVDENVALEACEFW 280 (885)
T ss_pred ecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHH-HHHHccCcchhHHHHHHHHH
Confidence 77776665555555666666667766544333333333333222222221 11111111 12245778899999999974
Q ss_pred HHHHH----------Hhhcc---cCCCCCCCCC------CCccc---Cc--cchhhhhHHHHHHHHhhh--cCCC--C--
Q 000257 1204 RICED----------RLAEG---LIPGGDLKPI------DVETD---AT--FDVTEHFWFPMLAGLSDL--TSDP--R-- 1253 (1774)
Q Consensus 1204 w~~~d----------~L~~~---~~~~~~~~~~------~~~~~---~~--~~~~~~lW~pLL~~Ls~l--~~d~--R-- 1253 (1774)
-.+++ |+.+- .+.+...... +.+++ ++ .|...++---=..+..+. -.|. +
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 43321 11110 0001111110 00110 00 010000000000000000 0011 1
Q ss_pred --------HHHHHHH---HHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhH-HHHHHHHHHH
Q 000257 1254 --------PEVRSCA---LEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWF-RETSIHSLQL 1321 (1774)
Q Consensus 1254 --------~EVR~~A---LqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl-~eT~~~aL~~ 1321 (1774)
=..|+++ |.+|-+++ + +.+. .++||++..... +..|. .|..++|+..
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLanvf-------~----~elL-~~l~PlLk~~L~---------~~~W~vrEagvLAlGA 419 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLANVF-------G----DELL-PILLPLLKEHLS---------SEEWKVREAGVLALGA 419 (885)
T ss_pred ccccccccccHhhccHHHHHHHHHhh-------H----HHHH-HHHHHHHHHHcC---------cchhhhhhhhHHHHHH
Confidence 2356643 44433321 1 2333 577888877653 23563 5677777776
Q ss_pred HHHHHH----HHHHHHHH-----------------------------------hHHHHHHHHHHhhcCCChhHHHHHHHH
Q 000257 1322 LCNLFN----TFYKEVCF-----------------------------------MLPPLLSLLLDCAKKPDQSVVSISLGA 1362 (1774)
Q Consensus 1322 lv~LF~----~yf~~l~~-----------------------------------~L~~~l~lL~~ci~q~n~~ia~ig~~~ 1362 (1774)
+..-=. .|+..|-+ .+..++.=|+.++-..|..+-..||++
T Consensus 420 IAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsA 499 (885)
T KOG2023|consen 420 IAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSA 499 (885)
T ss_pred HHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 655322 22222111 122233445566667889999999999
Q ss_pred HHHHHHHhCCCCCHhhHHHHHHHHHHHHhhcCch
Q 000257 1363 LVHLIEVGGHQFSESDWDTLLKSIRDASYTTQPL 1396 (1774)
Q Consensus 1363 L~~Li~~~~~~f~~~~W~~i~~~~~~~~~~t~p~ 1396 (1774)
+-.|.+..|+.+-+ ....|.+.+..+|..-...
T Consensus 500 fAtleE~A~~eLVp-~l~~IL~~l~~af~kYQ~K 532 (885)
T KOG2023|consen 500 FATLEEEAGEELVP-YLEYILDQLVFAFGKYQKK 532 (885)
T ss_pred HHHHHHhccchhHH-HHHHHHHHHHHHHHHHhhc
Confidence 99999999999876 8888888888888664433
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=89.08 E-value=46 Score=45.27 Aligned_cols=174 Identities=16% Similarity=0.183 Sum_probs=118.2
Q ss_pred HhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 000257 1187 ANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFD 1266 (1774)
Q Consensus 1187 ~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~ 1266 (1774)
+-+..+.+||-.|+-......+++....-|.+ .+. ......+.-..+..|- ..|.+.|||.+||..+-.
T Consensus 528 aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~----~d~-----~~~v~~m~~~tl~rL~--a~d~DqeVkeraIscmgq 596 (1233)
T KOG1824|consen 528 AVGDPFYKISAEALLVCQQLVKVIRPLQPPSS----FDA-----SPYVKTMYDCTLQRLK--ATDSDQEVKERAISCMGQ 596 (1233)
T ss_pred HhcCchHhhhHHHHHHHHHHHHHhcccCCCcc----CCC-----ChhHHHHHHHHHHHHh--cccccHHHHHHHHHHHHH
Confidence 34556788999998888877788764311100 000 0011123323333322 358889999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHhHHHHH-HHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHH
Q 000257 1267 LLNERGSKFSASFWESIFHRVLFPIF-DHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKE-VCFMLPPLLSLL 1344 (1774)
Q Consensus 1267 iL~~~G~~f~~~~W~~If~~VLfPif-~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~-l~~~L~~~l~lL 1344 (1774)
++...|+.++.+ ...+| |+| +.++. .-|+.-|.+.++.++..=.+. +.+.+.+++..|
T Consensus 597 ~i~~fgD~l~~e-----L~~~L-~il~eRl~n--------------EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 597 IIANFGDFLGNE-----LPRTL-PILLERLGN--------------EITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred HHHHHhhhhhhh-----hHHHH-HHHHHHHhc--------------hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 999999655542 22333 444 33431 457778888888888765442 457789999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHhCCCCCHhhHHHHHHHHHHHHh
Q 000257 1345 LDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDASY 1391 (1774)
Q Consensus 1345 ~~ci~q~n~~ia~ig~~~L~~Li~~~~~~f~~~~W~~i~~~~~~~~~ 1391 (1774)
.+|.+..+..+-......+..|+..-+..++.+..+.++.-+-.+..
T Consensus 657 ~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lis 703 (1233)
T KOG1824|consen 657 ASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLIS 703 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhh
Confidence 99999988888888889999999999999999988887765554443
No 22
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.63 E-value=34 Score=45.49 Aligned_cols=256 Identities=15% Similarity=0.205 Sum_probs=149.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhc-CchHHHHHHHHHHHHHHHHhccCCcccC---
Q 000257 1058 GSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRN-SRSETIRSLIVDCIVQMIKSKVGSIKSG--- 1133 (1774)
Q Consensus 1058 g~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~-s~~~eIre~IL~cL~qmI~~~~~~IkSG--- 1133 (1774)
.-.++..++..|-+.|.|++..-+ -.|+.-+..++.+ ++...+|-..==.|++-+.++....+-+
T Consensus 10 tlSpD~n~~~~Ae~~l~~~~~~nf-----------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 10 TLSPDQNVRKRAEKQLEQAQSQNF-----------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred HcCCCcchHHHHHHHHHHHHhccH-----------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 345667777788777776654211 2345555555544 3444555444445555555555544432
Q ss_pred -cHHH--------HHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcc---cchHHHHH
Q 000257 1134 -WRSV--------FMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSH---RISLKAIA 1201 (1774)
Q Consensus 1134 -Wk~I--------F~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~---nISL~AI~ 1201 (1774)
|--+ =+.+..+-..+.+..-..|=+++-.|-.= .+|.+...++|..|..=+.+.... .-+|.||+
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~---ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealG 155 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACI---ELPQNQWPELIVTLVSNVGEEQASMVKESSLEALG 155 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHh---hCchhhCHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 3211 01111111112222334455566555432 356788899999998877766554 45677777
Q ss_pred hHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHH
Q 000257 1202 LLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWE 1281 (1774)
Q Consensus 1202 lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~ 1281 (1774)
++- ..+. |+ . -.+.....-+-+..|..+ ..+...||-.|+..|.+.|.--+..|..+.=.
T Consensus 156 yic---e~i~----pe-v----------l~~~sN~iLtaIv~gmrk--~e~s~~vRLaa~~aL~nsLef~~~nF~~E~er 215 (859)
T KOG1241|consen 156 YIC---EDID----PE-V----------LEQQSNDILTAIVQGMRK--EETSAAVRLAALNALYNSLEFTKANFNNEMER 215 (859)
T ss_pred HHH---ccCC----HH-H----------HHHHHhHHHHHHHhhccc--cCCchhHHHHHHHHHHHHHHHHHHhhccHhhh
Confidence 632 2211 00 0 000112233333333222 24567899999999999999878777665433
Q ss_pred HHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhhcCCChhHHHHHH
Q 000257 1282 SIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVC-FMLPPLLSLLLDCAKKPDQSVVSISL 1360 (1774)
Q Consensus 1282 ~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~-~~L~~~l~lL~~ci~q~n~~ia~ig~ 1360 (1774)
.++-+| +...++- .+ .+-+.-|++.++++..-||+.+. .|.+.++.+-+.-++++|+++|--|+
T Consensus 216 n~iMqv-------vcEatq~------~d--~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQai 280 (859)
T KOG1241|consen 216 NYIMQV-------VCEATQS------PD--EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAI 280 (859)
T ss_pred ceeeee-------eeecccC------Cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 333222 2333221 11 46677899999999999999998 47788999999999999999998877
Q ss_pred HH
Q 000257 1361 GA 1362 (1774)
Q Consensus 1361 ~~ 1362 (1774)
.-
T Consensus 281 EF 282 (859)
T KOG1241|consen 281 EF 282 (859)
T ss_pred HH
Confidence 54
No 23
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.47 E-value=22 Score=49.97 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=43.1
Q ss_pred cchhhhhHHHHHHHHhhhccCCChhhhhHHHHHHHHHHhHHhhcCCCcc
Q 000257 910 KEMRSKNVEALRTLLALCDTEPDSLQDTWNAVLECVSRLEFIMSTPAIS 958 (1774)
Q Consensus 910 ~em~~KNv~alr~LL~lA~~~Gn~L~~SW~~IL~~isqLe~l~~~P~~~ 958 (1774)
..+.++-+.-+++|...+...|...+++|+.-|++|.+..++.++|...
T Consensus 587 ~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~ 635 (1610)
T KOG1848|consen 587 KDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTS 635 (1610)
T ss_pred ccCCccHHHHHhhccccCccccccCCcceEEEEeeccceeeEecCCCCC
Confidence 4466888899999999999999999999999999999999998776543
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.58 E-value=31 Score=39.70 Aligned_cols=144 Identities=16% Similarity=0.195 Sum_probs=86.1
Q ss_pred HHHhccCcc--cchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHH
Q 000257 1185 RFANNKTSH--RISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALE 1262 (1774)
Q Consensus 1185 ~F~~q~~d~--nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALq 1262 (1774)
.++++-.+. .++-+|+.++..++..+... .+.+...++| .|-+.+.|...-||..|.+
T Consensus 57 ~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-----------------~~~~~~~~l~---~Ll~~~~~~~~~i~~~a~~ 116 (228)
T PF12348_consen 57 AIIKQLSDLRSKVSKTACQLLSDLARQLGSH-----------------FEPYADILLP---PLLKKLGDSKKFIREAANN 116 (228)
T ss_dssp HHHH-S-HH---HHHHHHHHHHHHHHHHGGG-----------------GHHHHHHHHH---HHHHGGG---HHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-----------------HHHHHHHHHH---HHHHHHccccHHHHHHHHH
Confidence 344444443 47788999999999888643 1223344444 4455677778899999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHH---HHHH--HhH
Q 000257 1263 VLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFY---KEVC--FML 1337 (1774)
Q Consensus 1263 tLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf---~~l~--~~L 1337 (1774)
+|-.++...+ +++ .++++++..... ++.| ..+..++..+..++..+- ..+. ..+
T Consensus 117 ~L~~i~~~~~--~~~--------~~~~~~l~~~~~---------~Kn~--~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 117 ALDAIIESCS--YSP--------KILLEILSQGLK---------SKNP--QVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHHTTS---H----------HHHHHHHHHHTT----------S-H--HHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHHCC--cHH--------HHHHHHHHHHHh---------CCCH--HHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 9999888655 112 455666665432 2222 334445555555544444 2222 235
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 000257 1338 PPLLSLLLDCAKKPDQSVVSISLGALVHLIEV 1369 (1774)
Q Consensus 1338 ~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~ 1369 (1774)
+.+...+..|+...+..+-..|..||..+...
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999998888544
No 25
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=84.43 E-value=62 Score=37.25 Aligned_cols=180 Identities=16% Similarity=0.138 Sum_probs=106.7
Q ss_pred ccchHHHHHHHHhhcccccccchHHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhh
Q 000257 1021 RVFSLQKLVEISYYNMARIRMVWARIWSVLA---NHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILK 1097 (1774)
Q Consensus 1021 r~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~---~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLk 1097 (1774)
|.=.|++|-.+...| ........+++.+. .-+.......+..|+..|+..+..++...-.. +.. +-..++.
T Consensus 24 r~~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--~~~--~~~~~l~ 97 (228)
T PF12348_consen 24 RVEALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--FEP--YADILLP 97 (228)
T ss_dssp HHHHHHHHHHHHHH---B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG--GHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHH--HHHHHHH
Confidence 455688888888887 12223345566666 44444444455678899999999888765322 111 2244555
Q ss_pred hHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhh---hhhhh-
Q 000257 1098 PFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHF---DQVVG- 1173 (1774)
Q Consensus 1098 PFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~---~~l~~- 1173 (1774)
++..... .....|++...+||..|++..+ .+=+.++.++..+..+++..+-..+.+.+..++..+- ..+..
T Consensus 98 ~Ll~~~~-~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 98 PLLKKLG-DSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHGGG----HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHc-cccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 4544333 3456799999999999998765 1225669999999998888877788888887777655 22222
Q ss_pred hhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhc
Q 000257 1174 DCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAE 1212 (1774)
Q Consensus 1174 ~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~ 1212 (1774)
..+..++.++..+.. +.+..+=-.|-..||.+.....+
T Consensus 173 ~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLS-DADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCCH
Confidence 346788888888876 44566666777777777665543
No 26
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=82.06 E-value=1.2e+02 Score=39.21 Aligned_cols=141 Identities=20% Similarity=0.240 Sum_probs=81.8
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHH-HhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHH
Q 000257 1241 MLAGLSDLTSDPRPEVRSCALEVLFDLL-NERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSL 1319 (1774)
Q Consensus 1241 LL~~Ls~l~~d~R~EVR~~ALqtLF~iL-~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL 1319 (1774)
++.+|.....-...-|=.--+..+.++| ..+|..+....|+.+++ ++.-+++.+........ +..+. +.....+
T Consensus 302 vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~-i~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~ 376 (464)
T PF11864_consen 302 VLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILD-IIEEIFDKIQPFDSWYS-NSSSL---DQLSSNL 376 (464)
T ss_pred HHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHH-HHHHHHhhccccccccc-cccch---HHHHHHH
Confidence 6777777765444456667778888888 89999999999998774 55456666643211100 00000 2233333
Q ss_pred HHHHHHHHHHHHHH--HHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCCCCCHhhHHHHHHHHHHHHh
Q 000257 1320 QLLCNLFNTFYKEV--CFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRDASY 1391 (1774)
Q Consensus 1320 ~~lv~LF~~yf~~l--~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~~~~~f~~~~W~~i~~~~~~~~~ 1391 (1774)
..++...-+-++.- ...-+++++++..+...-.+..+...+ . -....---....|..-+.-+.+-|.
T Consensus 377 ~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl-~----~~~~~~~Ps~~~W~~n~~~ll~~F~ 445 (464)
T PF11864_consen 377 HSLLSSIESLYEQHDFNGPKDKLFNFFERVHSYLPDSSALLVL-F----YEERSCSPSNPDWLDNLQKLLDRFY 445 (464)
T ss_pred HHHHHHHHHHHhCCCcCccHHHHHHHHHHHhccCCHHHHHHHH-H----HHhcccCCCChHHHHHHHHHHHHHh
Confidence 33343333333332 223567888888888776666555433 1 1111111235689998888888776
No 27
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.60 E-value=1e+02 Score=40.03 Aligned_cols=274 Identities=15% Similarity=0.172 Sum_probs=154.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCccc
Q 000257 1053 HFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKS 1132 (1774)
Q Consensus 1053 hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkS 1132 (1774)
.|+....+++..|+..|+-+|..++- +...+++|-...-.+.|+..++..+....+...+.-+|.++...+. =.-
T Consensus 156 ~fi~Ll~s~~~~v~eQavWALgNIag---ds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~--P~P 230 (514)
T KOG0166|consen 156 IFIQLLSSPSADVREQAVWALGNIAG---DSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN--PSP 230 (514)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhcccc---CChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC--CCC
Confidence 48888999999999999999987763 3355677777888899999888776666778888899999886653 122
Q ss_pred CcHHHHHHHHHh---hcchhHHHHHHHHHHHHHHHhhh---hhhhh-hhhHHHHHHHHHHHHhccCcccchHHHHHhHHH
Q 000257 1133 GWRSVFMIFTAA---ADDEVESIVESAFENVEQVILEH---FDQVV-GDCFMDCVNCLIRFANNKTSHRISLKAIALLRI 1205 (1774)
Q Consensus 1133 GWk~IF~IL~~a---a~d~~e~iV~~AF~~l~~I~~d~---~~~l~-~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~ 1205 (1774)
-|..|=.+|-+- -.+.++.+..-|--.+..+.+.- .+.+. .+....+|.+|....-+ +-..|+. .
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~-----v~~PaLR---a 302 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPK-----VVTPALR---A 302 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcc-----cccHHHh---h
Confidence 455544444433 33455566655655555444322 22222 25666677777553322 2222222 2
Q ss_pred HHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 000257 1206 CEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTS-DPRPEVRSCALEVLFDLLNERGSKFSASFWESIF 1284 (1774)
Q Consensus 1206 ~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~-d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If 1284 (1774)
++. +..|. + .....-+=..+|..|..+.+ .+..-+|+.|+=++-+|-. |.. +.=+.|+
T Consensus 303 iGN-IvtG~------------d---~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~---~qiqaVi 361 (514)
T KOG0166|consen 303 IGN-IVTGS------------D---EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQ---EQIQAVI 361 (514)
T ss_pred ccc-eeecc------------H---HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCH---HHHHHHH
Confidence 222 22210 0 00111233345666667766 4444599999999988876 542 3356677
Q ss_pred HHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 000257 1285 HRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALV 1364 (1774)
Q Consensus 1285 ~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~ 1364 (1774)
.-=|+|.+-.+....+-. ......|.-. +.+..|--+ -..|+-.. ++++.+.++| .|.+.+. ......+|.
T Consensus 362 da~l~p~Li~~l~~~ef~-~rKEAawaIs--N~ts~g~~~-qi~yLv~~-giI~plcdlL---~~~D~~i-i~v~Ld~l~ 432 (514)
T KOG0166|consen 362 DANLIPVLINLLQTAEFD-IRKEAAWAIS--NLTSSGTPE-QIKYLVEQ-GIIKPLCDLL---TCPDVKI-ILVALDGLE 432 (514)
T ss_pred HcccHHHHHHHHhccchH-HHHHHHHHHH--hhcccCCHH-HHHHHHHc-CCchhhhhcc---cCCChHH-HHHHHHHHH
Confidence 777778887776544310 0122456322 222222210 01121111 3566677776 3444443 666666766
Q ss_pred HHHHH
Q 000257 1365 HLIEV 1369 (1774)
Q Consensus 1365 ~Li~~ 1369 (1774)
+++..
T Consensus 433 nil~~ 437 (514)
T KOG0166|consen 433 NILKV 437 (514)
T ss_pred HHHHH
Confidence 65554
No 28
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=79.08 E-value=18 Score=40.49 Aligned_cols=110 Identities=17% Similarity=0.182 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHH-H-HH
Q 000257 1062 DEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRS-V-FM 1139 (1774)
Q Consensus 1062 n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~-I-F~ 1139 (1774)
|+.||.-|+-++..|+.+|-..-| .+ -|...-+-+..++.||...+.||.+++... .+| |+. + +.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve--------~~-~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d--~ik--~k~~l~~~ 67 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE--------PY-LPNLYKCLRDEDPLVRKTALLVLSHLILED--MIK--VKGQLFSR 67 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH--------hH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--cee--ehhhhhHH
Confidence 467888999999999988732211 11 122222234678999999999999999863 333 333 2 34
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 000257 1140 IFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIR 1185 (1774)
Q Consensus 1140 IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~ 1185 (1774)
++ .+-.|+++.|...|=..+..+.....+......|.++|.-|..
T Consensus 68 ~l-~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 68 IL-KLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HH-HHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 44 3447888888888877777776654455555565555544433
No 29
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.49 E-value=3.1e+02 Score=38.84 Aligned_cols=259 Identities=17% Similarity=0.271 Sum_probs=151.0
Q ss_pred hhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCc---ccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhh--h
Q 000257 1094 DILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSI---KSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEH--F 1168 (1774)
Q Consensus 1094 ~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~I---kSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~--~ 1168 (1774)
..|.||.. ..+.+..|+..++.||..++..++..- .+--..+|+++..++.+ .+.+=..|-+.+..|+.+- .
T Consensus 96 ~~l~~~~~--~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~-~pkvRk~a~~~i~~VL~~p~~~ 172 (1176)
T KOG1248|consen 96 NILAPFLT--AESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHK-KPKVRKAAQRGIAAVLKGPPFA 172 (1176)
T ss_pred HHHHHHHh--hhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHcCCCCC
Confidence 34555544 235677899999999999999865432 11224567777776653 4566677788888777531 1
Q ss_pred -hh-hhh--hhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHH
Q 000257 1169 -DQ-VVG--DCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAG 1244 (1774)
Q Consensus 1169 -~~-l~~--~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~ 1244 (1774)
+. .|. .....|+.-+..+....... --+..+.+|+. -+.. +| .++...
T Consensus 173 ~~~~HpA~~~vak~cl~~~e~~~~~a~~t-~v~~~L~Ll~~---~~~~--~p----------------------~~li~s 224 (1176)
T KOG1248|consen 173 PDAEHPASLSVAKFCLALIESKLGSAENT-TVLRSLMLLRD---VLST--FP----------------------RPLIKS 224 (1176)
T ss_pred ccccchHHHHHHHHHHHHHHhhhchHHHH-HHHHHHHHHHH---hhcc--CC----------------------HHHHHH
Confidence 11 111 22333444444444311111 11334444332 2221 11 344555
Q ss_pred Hhhhc----CCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHH
Q 000257 1245 LSDLT----SDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQ 1320 (1774)
Q Consensus 1245 Ls~l~----~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~ 1320 (1774)
|++.| .-....|+..++|+|-+.+..+...++.++-..+ |--+++ +.....+ ..-...|+ .++.
T Consensus 225 l~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~l----L~al~~-l~ps~~D--~~~t~~W~-----~v~~ 292 (1176)
T KOG1248|consen 225 LCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARL----LTALMT-LSPSEND--DLLTVAWL-----KVLN 292 (1176)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHH----HHHHHH-hCCCccc--hHHHHHHH-----HHHH
Confidence 55553 4567899999999999999999887776544332 222222 2111100 00114574 4444
Q ss_pred HHHHHHHHHHHHHH-HhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCCC---C------------CHhhHHHHHH
Q 000257 1321 LLCNLFNTFYKEVC-FMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQ---F------------SESDWDTLLK 1384 (1774)
Q Consensus 1321 ~lv~LF~~yf~~l~-~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~~~~~---f------------~~~~W~~i~~ 1384 (1774)
..-..|...-.... ..+++++.+++.|...++++++..+.+|+..++...... . --..|..|..
T Consensus 293 ~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~kf~~~~~~ilq 372 (1176)
T KOG1248|consen 293 EAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLDYKFHAVWRFILQ 372 (1176)
T ss_pred HHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 44444443333332 568899999999889999999999999999988764441 0 1356999998
Q ss_pred HHHHHHhhcCc
Q 000257 1385 SIRDASYTTQP 1395 (1774)
Q Consensus 1385 ~~~~~~~~t~p 1395 (1774)
.+.-+|+..=+
T Consensus 373 i~s~~fek~G~ 383 (1176)
T KOG1248|consen 373 ILSALFEKCGE 383 (1176)
T ss_pred HHHHHHHHhhh
Confidence 88888877654
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=77.11 E-value=2.3e+02 Score=37.18 Aligned_cols=260 Identities=15% Similarity=0.186 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcc-cCcHHHHHH
Q 000257 1062 DEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIK-SGWRSVFMI 1140 (1774)
Q Consensus 1062 n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~Ik-SGWk~IF~I 1140 (1774)
+......+++.|+.+-... ...++ ...+ .|+......++++.||..++..|..++......+. -.=..++..
T Consensus 51 ~~e~v~~~~~iL~~~l~~~-~~~~l-----~~~~-~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 51 NREQVELICDILKRLLSAL-SPDSL-----LPQY-QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL 123 (503)
T ss_pred ChHHHHHHHHHHHHHHhcc-CHHHH-----HHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence 4444456777776553322 12221 1222 23333333467889999999999998866543111 011224444
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHhhh--hhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCC
Q 000257 1141 FTAAADDEVESIVESAFENVEQVILEH--FDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGG 1218 (1774)
Q Consensus 1141 L~~aa~d~~e~iV~~AF~~l~~I~~d~--~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~ 1218 (1774)
+-.+-.+++..+.+.|-..++.+.... +..+..... +..|.....+..+ .+-+...+++..++..=
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~---~~~L~~l~~~~~~-~vR~Rv~el~v~i~~~S-------- 191 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL---LSKLKSLMSQSSD-IVRCRVYELLVEIASHS-------- 191 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch---HHHHHHHHhccCH-HHHHHHHHHHHHHHhcC--------
Confidence 445556777888899999988876532 222322111 4555555554222 23345555544432110
Q ss_pred CCCCCCCcccCccchhhhhHH-HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHh-ccCCCCHHHHHHHHHHhHHHHHHHhh
Q 000257 1219 DLKPIDVETDATFDVTEHFWF-PMLAGLSDLTSDPRPEVRSCALEVLFDLLNE-RGSKFSASFWESIFHRVLFPIFDHVR 1296 (1774)
Q Consensus 1219 ~~~~~~~~~~~~~~~~~~lW~-pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~-~G~~f~~~~W~~If~~VLfPif~~l~ 1296 (1774)
.+.....|. .+|..+-+...+++.=||-.|+++|.++-.. || .+.+.+.=+++-+..+.
T Consensus 192 ------------~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g-------~~yL~~~gi~~~L~~~l 252 (503)
T PF10508_consen 192 ------------PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG-------LQYLEQQGIFDKLSNLL 252 (503)
T ss_pred ------------HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH-------HHHHHhCCHHHHHHHHH
Confidence 011111221 2455555556668888999999999998773 33 55666665666665554
Q ss_pred hhcccccccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 000257 1297 HAGKESLISSEDEWFRETSI-HSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVH 1365 (1774)
Q Consensus 1297 ~~~~~~~~~~~~~Wl~eT~~-~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~ 1365 (1774)
...+. ++.+ ....+ -.+...+.++...-..+....+.|+..|..++...+.++.-++..++-.
T Consensus 253 ~~~~~-----dp~~-~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ 316 (503)
T PF10508_consen 253 QDSEE-----DPRL-SSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQ 316 (503)
T ss_pred hcccc-----CCcc-cchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 33221 1111 11111 1123333343322233444568888888888888887776666666543
No 31
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=76.20 E-value=56 Score=39.10 Aligned_cols=209 Identities=18% Similarity=0.262 Sum_probs=117.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HHHhhhhhhcchhhHHhhhhhHHH-HHhcCchHHHHHHHHHHHHHHHHh
Q 000257 1048 SVLANHFISAGSHHDEKIAMYAIDSLRQLS-MKYLERAELTNFTFQNDILKPFVV-LIRNSRSETIRSLIVDCIVQMIKS 1125 (1774)
Q Consensus 1048 ~vl~~hf~~vg~~~n~~va~~AiDsLrQLs-~kfLe~eEL~~f~fQ~~fLkPFe~-im~~s~~~eIre~IL~cL~qmI~~ 1125 (1774)
.++.++|.. +-.+......|++.|..|. |+-+..+. -..+++.+-. +-..+.....|..+.+-+..+++.
T Consensus 41 ~~L~~F~~~--rl~D~~~~~~~l~gl~~L~~~~~~~~~~------~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~ 112 (262)
T PF14500_consen 41 QVLLDFFCS--RLDDHACVQPALKGLLALVKMKNFSPES------AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN 112 (262)
T ss_pred HHHHHHHHH--HhccHhhHHHHHHHHHHHHhCcCCChhh------HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH
Confidence 455666653 2233444455677777665 22221111 1223333211 111133456899999999999999
Q ss_pred ccCCccc-CcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH-----HHhccCcccchHHH
Q 000257 1126 KVGSIKS-GWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIR-----FANNKTSHRISLKA 1199 (1774)
Q Consensus 1126 ~~~~IkS-GWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~-----F~~q~~d~nISL~A 1199 (1774)
+...+++ |=.-|.+++..+-+++++..+-.+|+.++.++..|- + .+...++-+++.- |.-...|+ ...++
T Consensus 113 ~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~-~~~~e~lFd~~~cYFPI~F~pp~~dp-~~IT~ 188 (262)
T PF14500_consen 113 HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I-SEFAEDLFDVFSCYFPITFRPPPNDP-YGITR 188 (262)
T ss_pred hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c-chhHHHHHHHhhheeeeeeeCCCCCC-CCCCH
Confidence 8877753 667888999999888999999999999987776543 1 2333333333322 22222222 12222
Q ss_pred HHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHH
Q 000257 1200 IALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASF 1279 (1774)
Q Consensus 1200 I~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~ 1279 (1774)
-++=..+...+.. ...+..+=+|+|. -++..+ -+.|+.-+++||-.++..||..==.+.
T Consensus 189 edLk~~L~~cl~s------------------~~~fa~~~~p~Ll--eKL~s~-~~~~K~D~L~tL~~c~~~y~~~~~~~~ 247 (262)
T PF14500_consen 189 EDLKRALRNCLSS------------------TPLFAPFAFPLLL--EKLDST-SPSVKLDSLQTLKACIENYGADSLSPH 247 (262)
T ss_pred HHHHHHHHHHhcC------------------cHhhHHHHHHHHH--HHHcCC-CcHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 2222222222221 0112234455442 233332 456999999999999999997533456
Q ss_pred HHHHHHHhHH
Q 000257 1280 WESIFHRVLF 1289 (1774)
Q Consensus 1280 W~~If~~VLf 1289 (1774)
|..||..+=+
T Consensus 248 ~~~iw~~lk~ 257 (262)
T PF14500_consen 248 WSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHH
Confidence 7777655433
No 32
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=76.03 E-value=29 Score=42.08 Aligned_cols=65 Identities=29% Similarity=0.390 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHHHHhccC-CCCHHHH--HHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHH
Q 000257 1253 RPEVRSCALEVLFDLLNERGS-KFSASFW--ESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNT 1328 (1774)
Q Consensus 1253 R~EVR~~ALqtLF~iL~~~G~-~f~~~~W--~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~ 1328 (1774)
..+||..|++.+|+++..||. .|+...+ ......-+..+|.......+ .+....|..|+++|+..
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-----------~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSEN-----------PELQAIAVEGLCKLLLS 144 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHhc
Confidence 789999999999999999995 4565555 12222333344444332211 45777889999998865
No 33
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.95 E-value=77 Score=42.06 Aligned_cols=62 Identities=23% Similarity=0.355 Sum_probs=43.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 000257 1058 GSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKS 1125 (1774)
Q Consensus 1058 g~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~ 1125 (1774)
-.|+...+|..|++++..|++.-..++.+.+. |..++..+ .-.+++.||.+.++-|..|...
T Consensus 338 ls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sL----kterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 338 LSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSL----KTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred hhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHh----ccccchHHHHHHHHHHHHHhch
Confidence 35888899999999999998764444444432 55544433 2256888999999998887654
No 34
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=74.77 E-value=2.7e+02 Score=36.17 Aligned_cols=202 Identities=19% Similarity=0.221 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccC
Q 000257 1150 ESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDA 1229 (1774)
Q Consensus 1150 e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~ 1229 (1774)
+.....-|+.+..+++=.+..+..+....+|+.+...|+++...+.=..++..|-.+.-| +.+|.
T Consensus 148 ~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y---~~iP~------------ 212 (464)
T PF11864_consen 148 ESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY---GDIPS------------ 212 (464)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc---CcCCh------------
Confidence 344555666666666544455566788888999999888776544335556655554433 33332
Q ss_pred ccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhh
Q 000257 1230 TFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDE 1309 (1774)
Q Consensus 1230 ~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~ 1309 (1774)
.---+++..|+.+..-. +..+.|-+++-.++.+|.+. ..+.-|.+.++..... ....
T Consensus 213 ------~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-----------~~i~~L~~iL~~~~~~----~~~~ 269 (464)
T PF11864_consen 213 ------ESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-----------SAIRTLCDILRSPDPQ----NKRD 269 (464)
T ss_pred ------HHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-----------HHHHHHHHHHcccCcc----cccc
Confidence 22345566666663322 78888888888888876431 1222222333211110 1111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH-HHhCCCCCHhhHH
Q 000257 1310 WFRETSIHSLQLLCNLFNTFYKEV--------CFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLI-EVGGHQFSESDWD 1380 (1774)
Q Consensus 1310 Wl~eT~~~aL~~lv~LF~~yf~~l--------~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li-~~~~~~f~~~~W~ 1380 (1774)
...++|-+.++....-.- .....-++.-|...++..+..++.-...++..++ .+-+..+.++.|+
T Consensus 270 ------~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~ 343 (464)
T PF11864_consen 270 ------INVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWD 343 (464)
T ss_pred ------HHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCch
Confidence 234455555555443222 2112235666667777888888888889999999 8888889999999
Q ss_pred HHHHHHHHHHhhcCc
Q 000257 1381 TLLKSIRDASYTTQP 1395 (1774)
Q Consensus 1381 ~i~~~~~~~~~~t~p 1395 (1774)
.+++.+.+++....+
T Consensus 344 ~~~~i~~~~~~~~~~ 358 (464)
T PF11864_consen 344 IILDIIEEIFDKIQP 358 (464)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999885544433
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.89 E-value=2.6e+02 Score=37.24 Aligned_cols=102 Identities=14% Similarity=0.235 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----HHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHH
Q 000257 1048 SVLANHFISAGSHHDEKIAMYAIDSLRQLSM----KYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMI 1123 (1774)
Q Consensus 1048 ~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~----kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI 1123 (1774)
+++-+-|.+...|+++.+|..|+.++.|..+ .+.-+ -..||.-+-. ..+..+++||..|=+.+.-++
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~--------iD~Fle~lFa-lanD~~~eVRk~vC~alv~Ll 243 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH--------IDKFLEILFA-LANDEDPEVRKNVCRALVFLL 243 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH--------HHHHHHHHHH-HccCCCHHHHHHHHHHHHHHH
Confidence 5677888899999999999999999998743 11100 0123322222 235678999999999999999
Q ss_pred HhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHH
Q 000257 1124 KSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFE 1158 (1774)
Q Consensus 1124 ~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~ 1158 (1774)
+.+.+.|-..-+.|.+-.-.-.+|.+|++.-.|-+
T Consensus 244 evr~dkl~phl~~IveyML~~tqd~dE~VALEACE 278 (885)
T KOG2023|consen 244 EVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACE 278 (885)
T ss_pred HhcHHhcccchHHHHHHHHHHccCcchhHHHHHHH
Confidence 99999999999888886666667777776554444
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=71.62 E-value=3.3e+02 Score=35.79 Aligned_cols=197 Identities=12% Similarity=0.156 Sum_probs=98.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCc--
Q 000257 1053 HFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSI-- 1130 (1774)
Q Consensus 1053 hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~I-- 1130 (1774)
++..+..+++..+|+.+.+.+-+++.. .++...+.....+|..+..-+.+ .++=+|.-+++++.+|..+ .++.
T Consensus 164 ~L~~l~~~~~~~vR~Rv~el~v~i~~~---S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~-~~g~~y 238 (503)
T PF10508_consen 164 KLKSLMSQSSDIVRCRVYELLVEIASH---SPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAET-PHGLQY 238 (503)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhc---CHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcC-hhHHHH
Confidence 344444444445555555544444321 12222222223455555544443 4555777777888887663 2221
Q ss_pred --cc-CcHHHHHHHHHhhcch-hHHHHHH----HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHh
Q 000257 1131 --KS-GWRSVFMIFTAAADDE-VESIVES----AFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIAL 1202 (1774)
Q Consensus 1131 --kS-GWk~IF~IL~~aa~d~-~e~iV~~----AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~l 1202 (1774)
+. .=+.+..++..+..|+ ...+.-. .|..+-.+ . +.-....|..++.+|..... ..|..+...|++.
T Consensus 239 L~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~-~~~v~~~~p~~~~~l~~~~~-s~d~~~~~~A~dt 313 (503)
T PF10508_consen 239 LEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---S-PQEVLELYPAFLERLFSMLE-SQDPTIREVAFDT 313 (503)
T ss_pred HHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---C-hHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHH
Confidence 11 2333344444444444 2222211 22222111 1 11112567778888887654 3566666777776
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccC
Q 000257 1203 LRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGS 1273 (1774)
Q Consensus 1203 Lw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~ 1273 (1774)
|-.++........ + ...+..-.-.+|..+...+...+.|+|-++++.|=.++.....
T Consensus 314 lg~igst~~G~~~----L----------~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 314 LGQIGSTVEGKQL----L----------LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HHHHhCCHHHHHH----H----------HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence 6655433211000 0 0000122345677778888888999999999999999965443
No 37
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.12 E-value=2e+02 Score=41.90 Aligned_cols=231 Identities=19% Similarity=0.339 Sum_probs=128.0
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh---hhcchhhHHhhhhhHHHHHhcCc-----h
Q 000257 1037 ARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERA---ELTNFTFQNDILKPFVVLIRNSR-----S 1108 (1774)
Q Consensus 1037 ~Rirl~W~~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~e---EL~~f~fQ~~fLkPFe~im~~s~-----~ 1108 (1774)
+.++.-|..|+.+ |...+...+..+...+.+.+-++....++.- |.. .| .|-++-|+..+.+.. .
T Consensus 1063 ~nikSGWk~if~i----~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~--sf-~d~v~cl~~F~~~~~~~~~s~ 1135 (1514)
T KOG0929|consen 1063 SNIKSGWKNIFKI----FTTAASDSSKNIVELAFETVSKILQELFENVFPQEMD--SF-KDCVKCLEEFTKNLGFPDDSL 1135 (1514)
T ss_pred hhhhhhhhHHHHH----HHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhH--HH-HHHHHHHHHHHHhcCCCccch
Confidence 4566666665544 5566777778888888877765554444221 111 12 345566666655321 1
Q ss_pred HHHHHHHHHHHHHHHHh-ccCCc-----------ccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 000257 1109 ETIRSLIVDCIVQMIKS-KVGSI-----------KSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCF 1176 (1774)
Q Consensus 1109 ~eIre~IL~cL~qmI~~-~~~~I-----------kSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f 1176 (1774)
..| +.+--|.....+. ..+.+ .+||.+++-.++....+....+-..+-+.+-.|+.+|-+....+--
T Consensus 1136 ~aI-~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~W 1214 (1514)
T KOG0929|consen 1136 NAI-RFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFW 1214 (1514)
T ss_pred HHH-HHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHH
Confidence 222 2333455544444 22233 3599999999998877555556667777777777665433332222
Q ss_pred HHHHH-HHHHHHhccC--ccc-----chHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhh
Q 000257 1177 MDCVN-CLIRFANNKT--SHR-----ISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDL 1248 (1774)
Q Consensus 1177 ~dlI~-cL~~F~~q~~--d~n-----ISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l 1248 (1774)
.++.. |+.=|..-.. ++. .+-+.+.-|+.+.+-...- .+....+--.+|.-|..+
T Consensus 1215 e~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~-----------------~~~l~~lL~~~~~ll~~c 1277 (1514)
T KOG0929|consen 1215 EDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQF-----------------FKQLNNLLPKVLGLLVGC 1277 (1514)
T ss_pred HHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH
Confidence 22211 2222222222 111 2222222233333322210 011112333455666677
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHH
Q 000257 1249 TSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFD 1293 (1774)
Q Consensus 1249 ~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~ 1293 (1774)
+..+...+-...+..|.+.+...|..|+...|+.+++- +.-+|+
T Consensus 1278 i~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~-~~e~~~ 1321 (1514)
T KOG0929|consen 1278 IKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNC-ILEAFK 1321 (1514)
T ss_pred hcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHH-HHHHHH
Confidence 77778889999999999999999999999999999964 334444
No 38
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=68.51 E-value=94 Score=39.66 Aligned_cols=144 Identities=18% Similarity=0.215 Sum_probs=91.2
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHH
Q 000257 1242 LAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQL 1321 (1774)
Q Consensus 1242 L~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~ 1321 (1774)
..-|..+..+++.+=|++|+.-|..++..- .|+ .|+..|.++|.-+|+.+....+ ..-..+||+.
T Consensus 289 ~~~l~~~~g~e~a~~~k~alsel~~m~~e~--sfs--vWeq~f~~iL~~l~EvL~d~~~-----------~~~k~laLrv 353 (516)
T KOG2956|consen 289 ADLLKEISGSERASERKEALSELPKMLCEG--SFS--VWEQHFAEILLLLLEVLSDSED-----------EIIKKLALRV 353 (516)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHHHHcc--chh--HHHHHHHHHHHHHHHHHccchh-----------hHHHHHHHHH
Confidence 344444556689999999999998888743 344 4999999999999999874322 2334578888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCC------------CCCHhhHHHHHHHHHHH
Q 000257 1322 LCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGH------------QFSESDWDTLLKSIRDA 1389 (1774)
Q Consensus 1322 lv~LF~~yf~~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~~~~------------~f~~~~W~~i~~~~~~~ 1389 (1774)
+.++.++-=..|-.--.-...-++.|-+..++...+.+-.|.-.++.+.-+ .-++..--.+++.+-++
T Consensus 354 L~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl 433 (516)
T KOG2956|consen 354 LREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKL 433 (516)
T ss_pred HHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHH
Confidence 887777644433321222334455677777776666666654333322100 02344444566777888
Q ss_pred HhhcCchhhhh
Q 000257 1390 SYTTQPLELLN 1400 (1774)
Q Consensus 1390 ~~~t~p~~l~~ 1400 (1774)
|+.-...+|.+
T Consensus 434 ~e~l~~EeL~~ 444 (516)
T KOG2956|consen 434 FERLSAEELLN 444 (516)
T ss_pred HhhcCHHHHHH
Confidence 88777777664
No 39
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=68.12 E-value=3.6e+02 Score=34.84 Aligned_cols=98 Identities=11% Similarity=0.305 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHhhhhh-hcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHH
Q 000257 1047 WSVLANHFISAGSHH-DEKIAMYAIDSLRQLSMKYLERAE-LTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIK 1124 (1774)
Q Consensus 1047 W~vl~~hf~~vg~~~-n~~va~~AiDsLrQLs~kfLe~eE-L~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~ 1124 (1774)
=+.+...+..++.+| |+....|..+++.-| .|+.-... -.--.|...++-||..|+++... |.---+++-+.+|++
T Consensus 69 l~~L~~il~~v~kNPsnP~FnHylFEsi~~l-ir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~-EF~PYvfQIla~Lle 146 (435)
T PF03378_consen 69 LQHLTAILKEVSKNPSNPRFNHYLFESIGAL-IRFVCEADPEAVSQFEEALFPPFQEILQQDVQ-EFIPYVFQILAQLLE 146 (435)
T ss_dssp HHHHHHHHHHHHTS---HHHHHHHHHHHHHH-HHHS-GGGHH---HHHHHHHHHHHHHHHTT-T-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHH-HHhccCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 345555666677776 677777877777644 45542211 11125778899999998876533 455667888899999
Q ss_pred hcc-CCcccCcHHHHHHHHHhhc
Q 000257 1125 SKV-GSIKSGWRSVFMIFTAAAD 1146 (1774)
Q Consensus 1125 ~~~-~~IkSGWk~IF~IL~~aa~ 1146 (1774)
.+. ..+-.....+|..|-.+.-
T Consensus 147 ~~~~~~~p~~y~~L~~~Ll~p~l 169 (435)
T PF03378_consen 147 LRPSSPLPDAYKQLFPPLLSPAL 169 (435)
T ss_dssp HSS--S--TTTGGGHHHHTSGGG
T ss_pred cCCCCCCcHHHHHHHHHHcCcch
Confidence 987 5565566666766665543
No 40
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=67.31 E-value=29 Score=38.81 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000257 1253 RPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKE 1332 (1774)
Q Consensus 1253 R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~ 1332 (1774)
.+.||+.|+-+|-++...|+....+ |- -.++..++. +. ...+..|+..+.+|..+-+-.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~--~~-------~~l~~~L~D----------~~--~~VR~~al~~Ls~Li~~d~ik 59 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP--YL-------PNLYKCLRD----------ED--PLVRKTALLVLSHLILEDMIK 59 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh--HH-------HHHHHHHCC----------CC--HHHHHHHHHHHHHHHHcCcee
Confidence 3789999999999999999886655 32 233333321 11 345567777777776653333
Q ss_pred HHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 000257 1333 VCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEV 1369 (1774)
Q Consensus 1333 l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~ 1369 (1774)
.. +.++.-++.|+..+++.|...+..+|.++...
T Consensus 60 ~k---~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 60 VK---GQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred eh---hhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 32 23335556788999999999999999999988
No 41
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=64.71 E-value=5.6e+02 Score=35.82 Aligned_cols=168 Identities=14% Similarity=0.184 Sum_probs=97.8
Q ss_pred HHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 000257 1102 LIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVN 1181 (1774)
Q Consensus 1102 im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~ 1181 (1774)
++....+-|||+..+.|+.|+|-..|+.++.--+.++-||.-=-+.+ ..--.|+..+..|...-
T Consensus 577 L~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE--iTRl~AvkAlt~Ia~S~-------------- 640 (1233)
T KOG1824|consen 577 LKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE--ITRLTAVKALTLIAMSP-------------- 640 (1233)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch--hHHHHHHHHHHHHHhcc--------------
Confidence 33445788999999999999999999999988888887776543322 12223444444443211
Q ss_pred HHHHHHhccCcccchHHHHH--hHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHH
Q 000257 1182 CLIRFANNKTSHRISLKAIA--LLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSC 1259 (1774)
Q Consensus 1182 cL~~F~~q~~d~nISL~AI~--lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ 1259 (1774)
..|.+..+. .+..+++++.+ + -...|..
T Consensus 641 -----------l~i~l~~~l~~il~~l~~flrK--------------------------------------~-~r~lr~~ 670 (1233)
T KOG1824|consen 641 -----------LDIDLSPVLTEILPELASFLRK--------------------------------------N-QRALRLA 670 (1233)
T ss_pred -----------ceeehhhhHHHHHHHHHHHHHH--------------------------------------H-HHHHHHH
Confidence 112222111 12222222221 1 1236667
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 000257 1260 ALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVC----F 1335 (1774)
Q Consensus 1260 ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~----~ 1335 (1774)
.+.++-.++..||..++.+.-+.++.++. |++..-. -.--.+|+..++.++..+-..+. +
T Consensus 671 ~l~a~~~L~~~~~~~~~~~~~e~vL~el~-~Lisesd---------------lhvt~~a~~~L~tl~~~~ps~l~~~~~~ 734 (1233)
T KOG1824|consen 671 TLTALDKLVKNYSDSIPAELLEAVLVELP-PLISESD---------------LHVTQLAVAFLTTLAIIQPSSLLKISNP 734 (1233)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHhh-hhhhHHH---------------HHHHHHHHHHHHHHHhcccHHHHHHhhh
Confidence 77777788889999999988888876544 4443221 11123566666666666655544 3
Q ss_pred hHHHHHHHHHHhhcCC
Q 000257 1336 MLPPLLSLLLDCAKKP 1351 (1774)
Q Consensus 1336 ~L~~~l~lL~~ci~q~ 1351 (1774)
.|+.++.++.+=.-|.
T Consensus 735 iL~~ii~ll~Spllqg 750 (1233)
T KOG1824|consen 735 ILDEIIRLLRSPLLQG 750 (1233)
T ss_pred hHHHHHHHhhCccccc
Confidence 5666666655444443
No 42
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=63.21 E-value=1.2e+02 Score=33.15 Aligned_cols=130 Identities=23% Similarity=0.301 Sum_probs=78.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHhHHHHHHHhhhhcccc-cccchhhhHH----HHHHHHHH
Q 000257 1248 LTSDPRPEVRSCALEVLFDLLNERG--SKFSASFWESIFHRVLFPIFDHVRHAGKES-LISSEDEWFR----ETSIHSLQ 1320 (1774)
Q Consensus 1248 l~~d~R~EVR~~ALqtLF~iL~~~G--~~f~~~~W~~If~~VLfPif~~l~~~~~~~-~~~~~~~Wl~----eT~~~aL~ 1320 (1774)
.....+.-=|+.|++-|-+++.... ..++...|..||. .||-.+..-+..-... ..+....=.. +.+..+|+
T Consensus 12 ~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~~lR 90 (155)
T PF11640_consen 12 LLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCASALR 90 (155)
T ss_pred HHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHH
Confidence 3345577889999999999998765 8889999999994 6777777654322100 0001111112 34555566
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHH---HHH--hCCCCCHhhHH
Q 000257 1321 LLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPD-QSVVSISLGALVHL---IEV--GGHQFSESDWD 1380 (1774)
Q Consensus 1321 ~lv~LF~~yf~~l~~~L~~~l~lL~~ci~q~n-~~ia~ig~~~L~~L---i~~--~~~~f~~~~W~ 1380 (1774)
.++......+... -+..++..+.+.+..++ +.+.-+|..+.+-| +.. ....++..+|.
T Consensus 91 ~~ve~~~~~~k~k--t~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~~~~~ehL~~~~W~ 154 (155)
T PF11640_consen 91 LFVEKSNSRLKRK--TVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSYPPHVEHLSPKQWE 154 (155)
T ss_pred HHHHHHHhhcccc--hHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCCChHHHHCcHhhcC
Confidence 6665555544332 34566777777777777 45555665555444 322 45557777774
No 43
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=62.91 E-value=3.5e+02 Score=33.38 Aligned_cols=162 Identities=12% Similarity=0.203 Sum_probs=100.7
Q ss_pred HHHHHhhhhhhcchhhHHhhhhhHHHH----HhcCchHHHHHH-HHHHHHHHHHhccCCcccCcHHHHHHHHHhh-----
Q 000257 1076 LSMKYLERAELTNFTFQNDILKPFVVL----IRNSRSETIRSL-IVDCIVQMIKSKVGSIKSGWRSVFMIFTAAA----- 1145 (1774)
Q Consensus 1076 Ls~kfLe~eEL~~f~fQ~~fLkPFe~i----m~~s~~~eIre~-IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa----- 1145 (1774)
|...|.++.+-.+ ..-+.|+.|+... +++ ..++.|+- ||.|+..+|..-++.+...=..||+.+=.+.
T Consensus 50 Li~t~i~~~~~~~-~v~~~~i~~l~~~vL~DY~~-~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~ 127 (319)
T PF08767_consen 50 LIETFISKAEDPE-EVANNFIPPLLDAVLGDYQN-SVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMIN 127 (319)
T ss_dssp HHHHHHHT-S-HH-HHHHHTHHHHHHHHHHHHHH-S-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccCCHH-HHHHHHHHHHHHHHHHHHhc-CCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 4445554433111 1345666666442 333 34455554 6788888888888777776666655332221
Q ss_pred cc--hhHHHHHHHHHHHHHHHhhhhhh---hhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCC
Q 000257 1146 DD--EVESIVESAFENVEQVILEHFDQ---VVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDL 1220 (1774)
Q Consensus 1146 ~d--~~e~iV~~AF~~l~~I~~d~~~~---l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~ 1220 (1774)
+| ..+..-..=|+.++.++..+|.. ++.+.|..+++++ .++-+....+|+-.++..|..+...+....
T Consensus 128 ~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi-~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~------ 200 (319)
T PF08767_consen 128 KDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSI-VWGFKHTNREISETGLNILLELLNNVSKTN------ 200 (319)
T ss_dssp STSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHH-HHHHTSSSHHHHHHHHHHHHHHHHHHHH-S------
T ss_pred hhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHHhcC------
Confidence 11 34566666788888888877654 4679999999998 667777788999999999988888887510
Q ss_pred CCCCCcccCccchhhhhHHHHHHHHhhhcCCC
Q 000257 1221 KPIDVETDATFDVTEHFWFPMLAGLSDLTSDP 1252 (1774)
Q Consensus 1221 ~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~ 1252 (1774)
.......+..+++.+|...-.+.+|.
T Consensus 201 ------~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 201 ------PEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 01122345677788887766665553
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=61.50 E-value=65 Score=32.24 Aligned_cols=110 Identities=18% Similarity=0.145 Sum_probs=64.4
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHH
Q 000257 1242 LAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQL 1321 (1774)
Q Consensus 1242 L~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~ 1321 (1774)
+..|.++..+..+++|..|+.+|..+-.. .++.+..+...=.+|.+-.+....+ ......|+..
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~~~-----------~~v~~~a~~~ 72 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKSED-----------EEVVKAALWA 72 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhCCC-----------HHHHHHHHHH
Confidence 44455556677799999999998886653 2566777776333344444432211 2233344444
Q ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 000257 1322 LCNLFNTFYKEVCFML-PPLLSLLLDCAKKPDQSVVSISLGALVHLI 1367 (1774)
Q Consensus 1322 lv~LF~~yf~~l~~~L-~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li 1367 (1774)
+..+-...-.....+. .+++..|..++...+..+.+.++.+|.+|.
T Consensus 73 L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 73 LRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 4443322211122222 346777888888888888888888888763
No 45
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=60.15 E-value=1.4e+02 Score=30.33 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000257 1256 VRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEW-FRETSIHSLQLLCNLFNTFYKEVC 1334 (1774)
Q Consensus 1256 VR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~W-l~eT~~~aL~~lv~LF~~yf~~l~ 1334 (1774)
.|++++-.|-.+-..-|.. +...+..++-|++..+.. .+| ..-....+|..+++++.. .+-
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~D----------~d~rVRy~AcEaL~ni~k~~~~---~~l 63 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----ISKYLDEILPPVLKCFDD----------QDSRVRYYACEALYNISKVARG---EIL 63 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcCC----------CcHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 4788888877776655554 788899999999987642 222 122334455555555443 333
Q ss_pred HhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 000257 1335 FMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIE 1368 (1774)
Q Consensus 1335 ~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~ 1368 (1774)
..+.+++..|...+..+++. .+.|..-|-+|+.
T Consensus 64 ~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 64 PYFNEIFDALCKLSADPDEN-VRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhc
Confidence 45677777777777766665 4556666666653
No 46
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=60.03 E-value=4.8e+02 Score=33.71 Aligned_cols=196 Identities=14% Similarity=0.226 Sum_probs=112.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc--chhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhc
Q 000257 1049 VLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELT--NFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSK 1126 (1774)
Q Consensus 1049 vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~--~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~ 1126 (1774)
.+.+.+.+.-.|....=+.-|+-.|-.+.. .+++. ...|-+-++.-| .+...+.+.-+|.+.|+-|..|+.+.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~----e~sfsvWeq~f~~iL~~l~-EvL~d~~~~~~k~laLrvL~~ml~~Q 361 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLC----EGSFSVWEQHFAEILLLLL-EVLSDSEDEIIKKLALRVLREMLTNQ 361 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHH----ccchhHHHHHHHHHHHHHH-HHHccchhhHHHHHHHHHHHHHHHhc
Confidence 344445555555444444445554433321 11111 113444444444 45566677889999999999999999
Q ss_pred cCCcccCcH-HHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHH
Q 000257 1127 VGSIKSGWR-SVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRI 1205 (1774)
Q Consensus 1127 ~~~IkSGWk-~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~ 1205 (1774)
...+...=. .|-.+|. |+.|.+...++.|=+..-.++..|.+ ..|..-+..|+.. .|..+..-+|.++..
T Consensus 362 ~~~l~DstE~ai~K~Le-aa~ds~~~v~~~Aeed~~~~las~~P---~~~I~~i~~~Ilt-----~D~~~~~~~iKm~Tk 432 (516)
T KOG2956|consen 362 PARLFDSTEIAICKVLE-AAKDSQDEVMRVAEEDCLTTLASHLP---LQCIVNISPLILT-----ADEPRAVAVIKMLTK 432 (516)
T ss_pred hHhhhchHHHHHHHHHH-HHhCCchhHHHHHHHHHHHHHHhhCc---hhHHHHHhhHHhc-----CcchHHHHHHHHHHH
Confidence 998876544 4444554 45566667888887776666665543 2333333333332 556677777776666
Q ss_pred HHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhcc-CCCCH
Q 000257 1206 CEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERG-SKFSA 1277 (1774)
Q Consensus 1206 ~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G-~~f~~ 1277 (1774)
+...+..- ....+---+.=++...+...-..||+.|+=.|-.+...-| ..+.|
T Consensus 433 l~e~l~~E-------------------eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 433 LFERLSAE-------------------ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred HHhhcCHH-------------------HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 55554311 0111111123333344455678899999999888888888 55544
No 47
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=59.64 E-value=22 Score=35.76 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=49.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhc
Q 000257 1052 NHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSK 1126 (1774)
Q Consensus 1052 ~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~ 1126 (1774)
+++.+.-.+.+..++..|+..|..++... ++....-.+..++.++..++.. .+..++...+.+|.++....
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN---NDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCc
Confidence 34555555667788888998888776432 2222333445788888888765 47899999999999987654
No 48
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=54.99 E-value=6.5e+02 Score=33.47 Aligned_cols=215 Identities=15% Similarity=0.181 Sum_probs=120.7
Q ss_pred cCchHHHHHHHHHHHHHHHHhcc-CCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 000257 1105 NSRSETIRSLIVDCIVQMIKSKV-GSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCL 1183 (1774)
Q Consensus 1105 ~s~~~eIre~IL~cL~qmI~~~~-~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL 1183 (1774)
+.++..+|+.+..|+..|+-... ...-.-=+-++..++.+......... +... .+++.+...- ..=...++.|
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa---~~~a-g~v~g~~i~~--~~~~~~l~~l 179 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAA---YGLA-GLVNGLGIES--LKEFGFLDNL 179 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhh---HHHH-HHHcCcHHhh--hhhhhHHHHH
Confidence 46788899999999988764422 22222344556666644433222222 2222 1222221111 1112345667
Q ss_pred HHHHhccCcc-cchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHH
Q 000257 1184 IRFANNKTSH-RISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALE 1262 (1774)
Q Consensus 1184 ~~F~~q~~d~-nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALq 1262 (1774)
.++.+.+..- |.=..++.+- +-...-|. . .+-+-.|+|-.+-....|.-.+||..|..
T Consensus 180 ~~ai~dk~~~~~re~~~~a~~---~~~~~Lg~---------------~---~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~ 238 (569)
T KOG1242|consen 180 SKAIIDKKSALNREAALLAFE---AAQGNLGP---------------P---FEPYIVPILPSILTNFGDKINKVREAAVE 238 (569)
T ss_pred HHHhcccchhhcHHHHHHHHH---HHHHhcCC---------------C---CCchHHhhHHHHHHHhhccchhhhHHHHH
Confidence 7777654421 1101111111 11111110 0 12345666666666777888999998877
Q ss_pred HHHHHHH---hccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000257 1263 VLFDLLN---ERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPP 1339 (1774)
Q Consensus 1263 tLF~iL~---~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~ 1339 (1774)
+.-.++. .||. ..+|.|++..+.. ..| .|...+++++.-+--.==.++...+++
T Consensus 239 a~kai~~~~~~~aV-----------K~llpsll~~l~~----------~kW--rtK~aslellg~m~~~ap~qLs~~lp~ 295 (569)
T KOG1242|consen 239 AAKAIMRCLSAYAV-----------KLLLPSLLGSLLE----------AKW--RTKMASLELLGAMADCAPKQLSLCLPD 295 (569)
T ss_pred HHHHHHHhcCcchh-----------hHhhhhhHHHHHH----------Hhh--hhHHHHHHHHHHHHHhchHHHHHHHhH
Confidence 7665555 3443 2456677777652 257 566666666664433333456667888
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 000257 1340 LLSLLLDCAKKPDQSVVSISLGALVHLIEV 1369 (1774)
Q Consensus 1340 ~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~ 1369 (1774)
+.--|.+-++....++.+.|+.|+.++-..
T Consensus 296 iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 296 LIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999998877554
No 49
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=53.14 E-value=4.6e+02 Score=31.15 Aligned_cols=176 Identities=18% Similarity=0.174 Sum_probs=101.3
Q ss_pred cchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCC-----CCHHHHHHHH--HHHHH
Q 000257 1194 RISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSD-----PRPEVRSCAL--EVLFD 1266 (1774)
Q Consensus 1194 nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d-----~R~EVR~~AL--qtLF~ 1266 (1774)
++=..+++.+..+.-++....+. -.-.|..+|--|+.-+.-+... ..+.|..-+. -.+|.
T Consensus 32 ~lY~~~l~ii~Rll~y~~~~~~R-------------L~Y~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n 98 (237)
T PF08427_consen 32 DLYSLCLGIIHRLLCYLKRSRIR-------------LEYHWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFN 98 (237)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc-------------ccccHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHH
Confidence 34445666666666666543210 0124889998887776666432 1244444443 35788
Q ss_pred HHHhccCCC--CHHHHHHHHHHhHH--HHHHHhhhhcccccc---cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000257 1267 LLNERGSKF--SASFWESIFHRVLF--PIFDHVRHAGKESLI---SSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPP 1339 (1774)
Q Consensus 1267 iL~~~G~~f--~~~~W~~If~~VLf--Pif~~l~~~~~~~~~---~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~ 1339 (1774)
...+||+.| ++..-+.+|-+++- ++|+.+...-..... .+.+.+ +.....++..+..+-.||-..+..
T Consensus 99 ~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sl~nl~~I~~Hf~~ki~~---- 173 (237)
T PF08427_consen 99 FFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMYLRSSTSSSSEYKDS-SDKLTNSLDNLRSIISHFESKIEE---- 173 (237)
T ss_pred HHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHHhhccCCCccccccc-hhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 888999998 77778888877763 566666532211110 112334 455678888888888887766651
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHH------hCCCCCHhhHHHHHHHHHH
Q 000257 1340 LLSLLLDCAKKPDQSVVSISLGALVHLIEV------GGHQFSESDWDTLLKSIRD 1388 (1774)
Q Consensus 1340 ~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~------~~~~f~~~~W~~i~~~~~~ 1388 (1774)
|.--...=....+++..|....+..|=++ +-+++.|..|....+-+.+
T Consensus 174 -~~~~~~~~~lt~~qV~~VIk~~YdtLsl~~~e~Ld~~ery~E~~~~~~~k~~~r 227 (237)
T PF08427_consen 174 -WSAANKKSNLTPEQVLEVIKQNYDTLSLKLQEGLDQWERYREAPEKSFLKRIAR 227 (237)
T ss_pred -HHhhccCCCCCHHHHHHHHHhCccceecchhhccccccccccCchHHHHHHHHH
Confidence 00000111123456777666666655333 5567777777665554443
No 50
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=52.87 E-value=22 Score=27.99 Aligned_cols=28 Identities=43% Similarity=0.526 Sum_probs=21.4
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000257 1242 LAGLSDLTSDPRPEVRSCALEVLFDLLN 1269 (1774)
Q Consensus 1242 L~~Ls~l~~d~R~EVR~~ALqtLF~iL~ 1269 (1774)
+-.|..+..|+.++||..|+..|-++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3345567789999999999999988764
No 51
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=51.65 E-value=2.7e+02 Score=31.35 Aligned_cols=152 Identities=13% Similarity=0.177 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHH
Q 000257 1178 DCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVR 1257 (1774)
Q Consensus 1178 dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR 1257 (1774)
-+|.||.. ++++-+.+..|+.+..+++...+. ...+.|..+| .++..+.. ..+
T Consensus 7 lLIsCL~~-------q~~k~s~~KiL~~iVs~Va~~v~~------------~~~~~W~eL~----d~Ils~~~-~e~--- 59 (174)
T PF04510_consen 7 LLISCLTM-------QETKESDFKILRRIVSHVAYEVFD------------LQEGGWDELS----DCILSLSE-NEP--- 59 (174)
T ss_pred HHHHHHHh-------hcccHhHHHHHHHHHHHHHHHHHh------------cCCCCchhHH----HHHHHhhc-cch---
Confidence 46777755 556667778888888888754210 0112344444 44444432 112
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHH------
Q 000257 1258 SCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYK------ 1331 (1774)
Q Consensus 1258 ~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~------ 1331 (1774)
.+|..+|.++=..+ ..+|-...+.. |+|-+.....+.+. .+...| ++|+.+.+..+.|..+
T Consensus 60 ~kA~~IF~~L~~~l----~~efl~~~~~~-L~~~~~~~L~~p~~---~d~~~W-----~LAl~~a~~~~Iql~e~~~~~~ 126 (174)
T PF04510_consen 60 VKAFHIFICLPMPL----YGEFLIPFMEN-LLPEISKVLLPPEE---VDVEDW-----VLALTGAVCMAIQLLESSMRVD 126 (174)
T ss_pred HHHHHHHHhCCchh----hhhHHHHHHHH-HHHHHHHHcCCchh---ccHHHH-----HHHHHHHHHHHHHHhccccHHH
Confidence 45666655532111 22333334433 44555444332221 133567 5899888888887654
Q ss_pred HHHHhHHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHH
Q 000257 1332 EVCFMLPPLLSLLLDCAKKPDQ-SVVSISLGALVHLIEV 1369 (1774)
Q Consensus 1332 ~l~~~L~~~l~lL~~ci~q~n~-~ia~ig~~~L~~Li~~ 1369 (1774)
.+..+++.+++-+...+..+.+ +..+=|..-++.++..
T Consensus 127 ~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 127 LVKELLPKMVKSVKELVERGMEVGFLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 3444566666666777778998 9999999888888775
No 52
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=50.94 E-value=93 Score=38.33 Aligned_cols=126 Identities=14% Similarity=0.201 Sum_probs=78.3
Q ss_pred hHHHHHHHHhhhcCCCCHHHHHHHHHHHHH-HHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHH
Q 000257 1237 FWFPMLAGLSDLTSDPRPEVRSCALEVLFD-LLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETS 1315 (1774)
Q Consensus 1237 lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~-iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~ 1315 (1774)
+--||+.....--.+..|+.|..-+=.++. ++...|..+.+ .-..|+..|.-|.++-+.... .+.-+-+
T Consensus 68 ~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d~---------~~yPe~r 137 (319)
T PF08767_consen 68 FIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKDF---------EEYPEHR 137 (319)
T ss_dssp THHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSSTS---------SSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhh---------hhChHHH
Confidence 333444432222233456666654444444 45566766654 346677777777777764321 1114445
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCC
Q 000257 1316 IHSLQLLCNLFNTFYKEVCF----MLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGH 1372 (1774)
Q Consensus 1316 ~~aL~~lv~LF~~yf~~l~~----~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~~~~ 1372 (1774)
..=...+-.+-.++|+.+.. .+..+++-+.|.++.++..++..|..++..|+.....
T Consensus 138 ~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 138 VNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 55555556666667777653 3667788889999999999999999999999998443
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=49.41 E-value=82 Score=31.98 Aligned_cols=73 Identities=19% Similarity=0.338 Sum_probs=54.9
Q ss_pred hHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q 000257 1091 FQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVIL 1165 (1774)
Q Consensus 1091 fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~ 1165 (1774)
+-+.+++|....+. ..+..||....++|.++.....+.+-.--..||..|.....|++++ |+.|=+.+..++.
T Consensus 24 ~l~~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 24 YLDEILPPVLKCFD-DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhc
Confidence 44677788766554 4578899999999999998877766557788888888888888766 5556566655543
No 54
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=45.90 E-value=3.5e+02 Score=29.79 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCHH----HHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 000257 1254 PEVRSCALEVLFDLLNERGSKFSAS----FWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTF 1329 (1774)
Q Consensus 1254 ~EVR~~ALqtLF~iL~~~G~~f~~~----~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~y 1329 (1774)
...|.-|++.+-.+|..+|..|... .-..+++.-|.|.+-...... . ......+++.+..++.+|
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~---------~--~~i~~~slri~~~l~~~~ 104 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS---------D--FPIFSRSLRIFLTLLSRF 104 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh---------h--hHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999988632 234444445555444332111 1 456667888888888777
Q ss_pred HHHHHHhHHHHHHHHHH
Q 000257 1330 YKEVCFMLPPLLSLLLD 1346 (1774)
Q Consensus 1330 f~~l~~~L~~~l~lL~~ 1346 (1774)
-..+...+.-++..+..
T Consensus 105 ~~~Lk~ele~~l~~i~~ 121 (168)
T PF12783_consen 105 RSHLKLELEVFLSHIIL 121 (168)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77666555555555444
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=45.35 E-value=1e+03 Score=33.00 Aligned_cols=265 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhh----hhHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 000257 1050 LANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDIL----KPFVVLIRNSRSETIRSLIVDCIVQMIKS 1125 (1774)
Q Consensus 1050 l~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fL----kPFe~im~~s~~~eIre~IL~cL~qmI~~ 1125 (1774)
+-+.+...-.|.|..|.+-|+..+-.++... +-..++..+ .|+..+ .+..+++|-.+|+.|..+++.
T Consensus 257 il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-------~~~~~~~~~~rl~~pLv~L--~ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 257 LLTRVLPRMSHQNPAVVMGAIKVVANLASRC-------SQELIERCTVRVNTALLTL--SRRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-------CHHHHHHHHHHHHHHHHHh--hCCCccHHHHHHHHHHHHHHH
Q ss_pred ccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHH
Q 000257 1126 KVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRI 1205 (1774)
Q Consensus 1126 ~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~ 1205 (1774)
+..-+..- +.+|-.-..|+.- +-....+++-.+++ .++..++++=|.+|+. ..|..+.-.||.-+..
T Consensus 328 ~P~lf~~~----~~~Ff~~~~Dp~y-IK~~KLeIL~~Lan-------e~Nv~~IL~EL~eYa~-d~D~ef~r~aIrAIg~ 394 (746)
T PTZ00429 328 FPNLLRTN----LDSFYVRYSDPPF-VKLEKLRLLLKLVT-------PSVAPEILKELAEYAS-GVDMVFVVEVVRAIAS 394 (746)
T ss_pred CHHHHHHH----HHhhhcccCCcHH-HHHHHHHHHHHHcC-------cccHHHHHHHHHHHhh-cCCHHHHHHHHHHHHH
Q ss_pred HHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 000257 1206 CEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFH 1285 (1774)
Q Consensus 1206 ~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~ 1285 (1774)
|+-++. ...-.++..|.++. +.+.++-..++.++.+++..|-..+ ++.
T Consensus 395 lA~k~~------------------------~~a~~cV~~Ll~ll-~~~~~~v~e~i~vik~IlrkyP~~~-------il~ 442 (746)
T PTZ00429 395 LAIKVD------------------------SVAPDCANLLLQIV-DRRPELLPQVVTAAKDIVRKYPELL-------MLD 442 (746)
T ss_pred HHHhCh------------------------HHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHCccHH-------HHH
Q ss_pred HhHHHH-HHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 000257 1286 RVLFPI-FDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALV 1364 (1774)
Q Consensus 1286 ~VLfPi-f~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~ 1364 (1774)
.++-.+ .+.+... .|-..++=++.+|=+.+.. .++++..++.-+..++..+-.....+..
T Consensus 443 ~L~~~~~~~~i~e~------------------~AKaaiiWILGEy~~~I~~-a~~~L~~~i~~f~~E~~~VqlqlLta~v 503 (746)
T PTZ00429 443 TLVTDYGADEVVEE------------------EAKVSLLWMLGEYCDFIEN-GKDIIQRFIDTIMEHEQRVQLAILSAAV 503 (746)
T ss_pred HHHHhhcccccccH------------------HHHHHHHHHHHhhHhhHhh-HHHHHHHHHhhhccCCHHHHHHHHHHHH
Q ss_pred HHHHHhCCCCCHhhHHHHHHHHHH
Q 000257 1365 HLIEVGGHQFSESDWDTLLKSIRD 1388 (1774)
Q Consensus 1365 ~Li~~~~~~f~~~~W~~i~~~~~~ 1388 (1774)
.+....-+.. ...+..++...-+
T Consensus 504 Klfl~~p~~~-~~~l~~vL~~~t~ 526 (746)
T PTZ00429 504 KMFLRDPQGM-EPQLNRVLETVTT 526 (746)
T ss_pred HHHhcCcHHH-HHHHHHHHHHHHh
No 56
>PRK09687 putative lyase; Provisional
Probab=43.73 E-value=2.3e+02 Score=34.33 Aligned_cols=161 Identities=14% Similarity=0.045 Sum_probs=89.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCccc
Q 000257 1053 HFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKS 1132 (1774)
Q Consensus 1053 hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkS 1132 (1774)
.+.....+++..+|..|++.|.||...- .-|...+..+..++.+..+.+||...+..|.++- . .. ..
T Consensus 58 ~l~~ll~~~d~~vR~~A~~aLg~lg~~~---------~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~-~-~~--~~ 124 (280)
T PRK09687 58 LAIELCSSKNPIERDIGADILSQLGMAK---------RCQDNVFNILNNLALEDKSACVRASAINATGHRC-K-KN--PL 124 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCc---------cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc-c-cc--cc
Confidence 3445567889999999999999875311 0144556666666667788999999999998852 1 11 11
Q ss_pred CcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhc
Q 000257 1133 GWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAE 1212 (1774)
Q Consensus 1133 GWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~ 1212 (1774)
.+......+..+..|++..+=..+-..+. .+.. .+.|..|....+. .+..+-..|+.-|-.+ ..
T Consensus 125 ~~~~a~~~l~~~~~D~~~~VR~~a~~aLg--------~~~~---~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~----~~ 188 (280)
T PRK09687 125 YSPKIVEQSQITAFDKSTNVRFAVAFALS--------VIND---EAAIPLLINLLKD-PNGDVRNWAAFALNSN----KY 188 (280)
T ss_pred cchHHHHHHHHHhhCCCHHHHHHHHHHHh--------ccCC---HHHHHHHHHHhcC-CCHHHHHHHHHHHhcC----CC
Confidence 23556666766666665443222222221 1211 2344444444442 3334444444433221 00
Q ss_pred ccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 000257 1213 GLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFD 1266 (1774)
Q Consensus 1213 ~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~ 1266 (1774)
+ . . .....|.....|+..+||..|+..|-+
T Consensus 189 ----~------------~-----~---~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 189 ----D------------N-----P---DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred ----C------------C-----H---HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 0 0 0 112233444589999999999998854
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.57 E-value=8.6e+02 Score=33.51 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=51.6
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHhccCCccc-CcHHHHHHHHH--------------hhcchhHHHHHHHHHHHHHHH
Q 000257 1100 VVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKS-GWRSVFMIFTA--------------AADDEVESIVESAFENVEQVI 1164 (1774)
Q Consensus 1100 e~im~~s~~~eIre~IL~cL~qmI~~~~~~IkS-GWk~IF~IL~~--------------aa~d~~e~iV~~AF~~l~~I~ 1164 (1774)
..||.-..+...|...+.||..++.++..|||- |-.+...+++. +-+|++.+|-+.|++..-.++
T Consensus 299 ~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 299 RTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred HHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 456766778889999999999999999999996 77777776653 223677888888888776665
Q ss_pred h
Q 000257 1165 L 1165 (1774)
Q Consensus 1165 ~ 1165 (1774)
+
T Consensus 379 n 379 (866)
T KOG1062|consen 379 N 379 (866)
T ss_pred c
Confidence 4
No 58
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.23 E-value=4.1e+02 Score=34.99 Aligned_cols=182 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHH-HHHHHHhccCc-------ccchHHHHHhHHHHHHHhhcccCCCCCCCCCCC
Q 000257 1154 ESAFENVEQVILEHFDQVVGDCFMDCVN-CLIRFANNKTS-------HRISLKAIALLRICEDRLAEGLIPGGDLKPIDV 1225 (1774)
Q Consensus 1154 ~~AF~~l~~I~~d~~~~l~~~~f~dlI~-cL~~F~~q~~d-------~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~ 1225 (1774)
+.|=--++.++++++..=..+....+|. ...+|+..... .-.+-.||++=-..+.|++
T Consensus 18 KaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~-------------- 83 (675)
T KOG0212|consen 18 KAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE-------------- 83 (675)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH--------------
Q ss_pred cccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhccccccc
Q 000257 1226 ETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLIS 1305 (1774)
Q Consensus 1226 ~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~ 1305 (1774)
.+|.|++.+| .|++..||--|++.|+++-+-.-+.+-. +-..+|-.+..+....+.+..+
T Consensus 84 ----------~iv~Pv~~cf----~D~d~~vRyyACEsLYNiaKv~k~~v~~------~Fn~iFdvL~klsaDsd~~V~~ 143 (675)
T KOG0212|consen 84 ----------KIVPPVLNCF----SDQDSQVRYYACESLYNIAKVAKGEVLV------YFNEIFDVLCKLSADSDQNVRG 143 (675)
T ss_pred ----------HhhHHHHHhc----cCccceeeeHhHHHHHHHHHHhccCccc------chHHHHHHHHHHhcCCcccccc
Q ss_pred ch-------hhhHHHHH-HHHHHHHHHHHHHHHH-----------------------HHHHhHHHHHHHHHHhhcCCChh
Q 000257 1306 SE-------DEWFRETS-IHSLQLLCNLFNTFYK-----------------------EVCFMLPPLLSLLLDCAKKPDQS 1354 (1774)
Q Consensus 1306 ~~-------~~Wl~eT~-~~aL~~lv~LF~~yf~-----------------------~l~~~L~~~l~lL~~ci~q~n~~ 1354 (1774)
.. ++-..+.. .-.+..++-|...+.- .+...++.+++-|......+++.
T Consensus 144 ~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~e 223 (675)
T KOG0212|consen 144 GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDE 223 (675)
T ss_pred HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHH
Q ss_pred HHHHHHHHHHHHHHH
Q 000257 1355 VVSISLGALVHLIEV 1369 (1774)
Q Consensus 1355 ia~ig~~~L~~Li~~ 1369 (1774)
+-+..-.|+-+++..
T Consensus 224 Vr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 224 VRTLTDTLLSEFLAE 238 (675)
T ss_pred HHHHHHHHHHHHHHH
No 59
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.25 E-value=1.2e+03 Score=32.13 Aligned_cols=222 Identities=17% Similarity=0.239 Sum_probs=119.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHH
Q 000257 1060 HHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFM 1139 (1774)
Q Consensus 1060 ~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~ 1139 (1774)
.+|+.|.+.+...+-++|-+- + -..+.+|+..+|+.+ .++|.++|++|..|.-.+..- +.+=|.
T Consensus 298 S~n~sVVmA~aql~y~lAP~~----~------~~~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~l----F~P~lK 361 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKN----Q------VTKIAKALVRLLRSN--REVQYVVLQNIATISIKRPTL----FEPHLK 361 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHH----H------HHHHHHHHHHHHhcC--CcchhhhHHHHHHHHhcchhh----hhhhhh
Confidence 568888888887777776442 1 145678888888754 468999999999987664221 111111
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCC
Q 000257 1140 IFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGD 1219 (1774)
Q Consensus 1140 IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~ 1219 (1774)
-|-.-+.|+. .+-..=.+++..+.++- +...+..=|..|.+.... ...-.||.-+-.|+..+....
T Consensus 362 sFfv~ssDp~-~vk~lKleiLs~La~es-------ni~~ILrE~q~YI~s~d~-~faa~aV~AiGrCA~~~~sv~----- 427 (968)
T KOG1060|consen 362 SFFVRSSDPT-QVKILKLEILSNLANES-------NISEILRELQTYIKSSDR-SFAAAAVKAIGRCASRIGSVT----- 427 (968)
T ss_pred ceEeecCCHH-HHHHHHHHHHHHHhhhc-------cHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHhhCchh-----
Confidence 2222223332 11112233343333322 122222223334443322 355567777777877764320
Q ss_pred CCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhc
Q 000257 1220 LKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAG 1299 (1774)
Q Consensus 1220 ~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~ 1299 (1774)
--.|.+|..+......-|=..|..++-.+|.... ..-.+.|++ |+.+++.+.-+.
T Consensus 428 -------------------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p----~~h~~ii~~--La~lldti~vp~ 482 (968)
T KOG1060|consen 428 -------------------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP----AEHLEILFQ--LARLLDTILVPA 482 (968)
T ss_pred -------------------hHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh----HHHHHHHHH--HHHHhhhhhhhh
Confidence 1246677777666677788888888888876432 222223332 444554443211
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChh
Q 000257 1300 KESLISSEDEWFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQS 1354 (1774)
Q Consensus 1300 ~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~ci~q~n~~ 1354 (1774)
....-.| |+..|-..+-.++|+++..+.+-+..+.+.
T Consensus 483 ----ARA~IiW--------------Lige~~e~vpri~PDVLR~laksFs~E~~e 519 (968)
T KOG1060|consen 483 ----ARAGIIW--------------LIGEYCEIVPRIAPDVLRKLAKSFSDEGDE 519 (968)
T ss_pred ----hhceeee--------------eehhhhhhcchhchHHHHHHHHhhccccch
Confidence 0122467 455555555566777777776666655543
No 60
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=37.54 E-value=2.3e+03 Score=34.80 Aligned_cols=220 Identities=15% Similarity=0.217 Sum_probs=114.2
Q ss_pred HhhCCchhhhhhcCCCCChhHHHHHHHHHHhh-cHHhhhcCCCccchHHHHHHHHhhcccccccchHHHHHHHHHHHHHh
Q 000257 979 ELAGKPAEQVFVNSVKLPSDSIVEFFNALCGV-SAEELRQTPARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISA 1057 (1774)
Q Consensus 979 e~~~~~id~IF~~S~~Ls~eAiv~Fv~ALc~v-S~eEl~~s~pr~FsLqKLvEVa~~Nm~Rirl~W~~IW~vl~~hf~~v 1057 (1774)
++.++.+..||+...+ +.++..-..++..- +..-.....--.|.+.||.|+...-..+..+. =..+...|..|
T Consensus 543 eIfe~~~p~iferi~~--n~~l~~i~n~~l~n~~ts~~fa~ill~fll~rl~e~gs~~~~~s~l~----LrLFkl~F~sv 616 (3550)
T KOG0889|consen 543 EIFETNSPFIFERILK--NNALFHIANTLLSNESTSVNFANILLSFLLSRLKELGSNDLLDSKLL----LRLFKLIFGSV 616 (3550)
T ss_pred HHHHHhhHHHHHHHhc--cCcHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHccCccccchhh----Hhhhhhhhhhh
Confidence 4445567778887766 55666655555432 11100000112478888888764423332221 12344556666
Q ss_pred cCCCC--HHHHHHHHHHHHHHHHHHhhh-hhhcchhhH--HhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCc--
Q 000257 1058 GSHHD--EKIAMYAIDSLRQLSMKYLER-AELTNFTFQ--NDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSI-- 1130 (1774)
Q Consensus 1058 g~~~n--~~va~~AiDsLrQLs~kfLe~-eEL~~f~fQ--~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~I-- 1130 (1774)
+..+. +.+...-+.-+-.-+|+.... +|--|| || +.+++.+ .+-.....-+.++-||..+++..-+-+
T Consensus 617 ~~f~~~nervl~phv~~Ii~~smela~~a~eplnY-f~LLraLFRsi----gGg~~d~ly~e~lplL~~lLe~ln~l~~~ 691 (3550)
T KOG0889|consen 617 SKFPSENERVLRPHVHDIISTSMELATTAPEPLNY-FQLLRALFRSI----GGGAFDSLYREVLPLLPNLLEILNHLLSS 691 (3550)
T ss_pred hcccccchhhcccchhHHHHHHHHHHhcCCcchhH-HHHHHHHHHHh----hccchHhHHHHHHHHHHHHHHHHHHHhhc
Confidence 55543 333333232222234555433 232232 23 3333332 222222233333333333333322211
Q ss_pred -cc-CcHHHHH--HHHHhhc-------------------chhHHHHHHHHHHHHHHHh----hhhhhhhhhhHHHHHHHH
Q 000257 1131 -KS-GWRSVFM--IFTAAAD-------------------DEVESIVESAFENVEQVIL----EHFDQVVGDCFMDCVNCL 1183 (1774)
Q Consensus 1131 -kS-GWk~IF~--IL~~aa~-------------------d~~e~iV~~AF~~l~~I~~----d~~~~l~~~~f~dlI~cL 1183 (1774)
++ |=|-+|- .|+.+++ .....+|.+|+.++++.++ ||+..+....-.+++.+|
T Consensus 692 ~~s~~mkdLfvELclTvPvRLS~Llpylp~LM~PLv~aLkgs~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaL 771 (3550)
T KOG0889|consen 692 FHSQGMKDLFVELCLTLPVRLSSLLPYLPLLMKPLVFALKGSPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQAL 771 (3550)
T ss_pred cCccchHHHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcCCHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHH
Confidence 22 5566664 3343333 2357899999999999887 466666667778888888
Q ss_pred HHHHhccCcccchHHHHHhHHHHHHH
Q 000257 1184 IRFANNKTSHRISLKAIALLRICEDR 1209 (1774)
Q Consensus 1184 ~~F~~q~~d~nISL~AI~lLw~~~d~ 1209 (1774)
-.-.+..-+-++|-.|+..|...+-+
T Consensus 772 w~~l~~~~~~s~s~~a~rILGKlgG~ 797 (3550)
T KOG0889|consen 772 WSHLRPVPNYSYSHRALRILGKLGGR 797 (3550)
T ss_pred HHhccCCCCchHHHHHHHHHHhhcCc
Confidence 88776543567888899887765533
No 61
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=36.83 E-value=3.6e+02 Score=32.79 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhcc
Q 000257 1048 SVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKV 1127 (1774)
Q Consensus 1048 ~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~ 1127 (1774)
.++.....-...|++..||..|+.+|.-.++= ++ +.-.+++.-|...+.. .+.+||-..+++|..++..+|
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll--d~------~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLL--DK------ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh--Ch------HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcC
Confidence 34555555667788889999999998765542 11 2335556667666644 488999999999999999999
Q ss_pred CCcccCcH
Q 000257 1128 GSIKSGWR 1135 (1774)
Q Consensus 1128 ~~IkSGWk 1135 (1774)
..+-..+.
T Consensus 97 ~~~~~~~~ 104 (298)
T PF12719_consen 97 IDIFDSES 104 (298)
T ss_pred chhccchh
Confidence 77655433
No 62
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=36.55 E-value=1.6e+02 Score=32.15 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhh--hhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHH
Q 000257 1059 SHHDEKIAMYAIDSLRQLSMKYLE--RAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMI 1123 (1774)
Q Consensus 1059 ~~~n~~va~~AiDsLrQLs~kfLe--~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI 1123 (1774)
.|+|+.+..+|+.-|.-+..---. +.|.+ .++|+..+..++....+.+||+.+++.|.+.-
T Consensus 47 ~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva----sk~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 47 NHKDPNVQLRALTLLDACAENCGKRFHQEVA----SRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHh----hHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 478899999998777655421110 11222 26788888877776688999999999888733
No 63
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.24 E-value=1.6e+03 Score=31.76 Aligned_cols=150 Identities=18% Similarity=0.237 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhh----------hhhhhhhhHHH
Q 000257 1109 ETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEH----------FDQVVGDCFMD 1178 (1774)
Q Consensus 1109 ~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~----------~~~l~~~~f~d 1178 (1774)
.-+|-+.-.|++.||.+-.. +-|.-++.....--+..+..-+--|.=|+.++++.| +..+....|.+
T Consensus 103 ~~iRvql~~~l~~Ii~~D~p---~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~ 179 (1010)
T KOG1991|consen 103 ELIRVQLTACLNTIIKADYP---EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPD 179 (1010)
T ss_pred hHHHHHHHHHHHHHHhcCCc---ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 34777777888888866443 789999998877666666667777777777777543 45556678888
Q ss_pred HHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcc---cCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhc-----C
Q 000257 1179 CVNCLIRFANNKTSHRISLKAIALLRICEDRLAEG---LIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLT-----S 1250 (1774)
Q Consensus 1179 lI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~---~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~-----~ 1250 (1774)
+.+-...+..+. |..+..+++.|.+....- .+|..- .....-..|+-|+..+.+-- +
T Consensus 180 il~~~~~ll~~~-----s~~s~el~klIlKifks~~~~~LP~~L----------~~~~~f~~W~~l~l~i~~rpvP~E~l 244 (1010)
T KOG1991|consen 180 ILQIFNGLLSQE-----SYQSVELQKLILKIFKSLIYYELPLEL----------SAPETFTSWMELFLSILNRPVPVEVL 244 (1010)
T ss_pred HHHHHHhhcccc-----chHHHHHHHHHHHHHHHHHHHhCCHHh----------hCchhHHHHHHHHHHHHcCCCChhcc
Confidence 777777777655 567777766665522211 112100 00112356888887776552 2
Q ss_pred CCCHHHH---------HHHHHHHHHHHHhccCCCC
Q 000257 1251 DPRPEVR---------SCALEVLFDLLNERGSKFS 1276 (1774)
Q Consensus 1251 d~R~EVR---------~~ALqtLF~iL~~~G~~f~ 1276 (1774)
.-++|+| +=|+..|.|++..||+...
T Consensus 245 ~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~ 279 (1010)
T KOG1991|consen 245 SLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSL 279 (1010)
T ss_pred cCChhhcccccchhhHHHHHHHHHHHHHHhCCccc
Confidence 2355655 5699999999999998653
No 64
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=30.21 E-value=1.3e+03 Score=29.55 Aligned_cols=133 Identities=24% Similarity=0.314 Sum_probs=81.7
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHh--------ccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHH
Q 000257 1242 LAGLSDLTSDPRPEVRSCALEVLFDLLNE--------RGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRE 1313 (1774)
Q Consensus 1242 L~~Ls~l~~d~R~EVR~~ALqtLF~iL~~--------~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~e 1313 (1774)
+..|.++..| +++...|-..|-=++.. ++.....=+=+.+|..++-++++..+..... ..+
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~---------~k~ 341 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE---------IKS 341 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh---------hHH
Confidence 4444445444 56666555543333332 1222233233477877777776666543221 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Q 000257 1314 TSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTLLKSIRD 1388 (1774)
Q Consensus 1314 T~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~~~~~f~~~~W~~i~~~~~~ 1388 (1774)
....||.++.+=.. ...+..-++.++-+|+.++.-++..+-..+..+|..++..+.+-+. +|-+.++..+-+
T Consensus 342 ~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~-~hl~sLI~~LL~ 413 (415)
T PF12460_consen 342 NYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS-EHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH-HHHHHHHHHHHh
Confidence 45566666665333 3455566888899999999999999999999999999998844444 466666665543
No 65
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=28.09 E-value=2.7e+02 Score=33.35 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=56.7
Q ss_pred ChhhHHHHHHHHHHHHHHhhcCCChhHHH-HHHHHHHHHHH--HHHHHhHHHHHhHHHHHHhhcCCCCChhhHHHHHHHH
Q 000257 391 NFHFIDSIKAYLSYALLRASVSQSSVIFQ-YATGIFSVLLL--RFRESLKGEIGVFFPLIVLRSLDGSDNNQKTSVLRMI 467 (1774)
Q Consensus 391 ~~~f~~~ik~~Lc~~Llrn~~S~~~~vF~-lsl~if~~Ll~--~~r~~Lk~Eievfl~~i~l~~Le~s~~~qK~~~Le~l 467 (1774)
+.+....||.|++..+-.....+..+-.+ ..++++..|-. .++..+..-+.-|+ ++|.+.+..-|..+|++|
T Consensus 84 ~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll-----~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 84 NDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLL-----SLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred ChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHH-----HHHHcCChHHHHHHHHHH
Confidence 34556678888776654443332222233 34788777633 56666666555554 444455555668899999
Q ss_pred HHHhcCchHHHHHHHh
Q 000257 468 DKVCKDPQMLVDVYVN 483 (1774)
Q Consensus 468 ~~lc~dp~~lvdiy~N 483 (1774)
-.+..+|....++...
T Consensus 159 ~nLS~np~~~~~Ll~~ 174 (254)
T PF04826_consen 159 VNLSENPDMTRELLSA 174 (254)
T ss_pred HHhccCHHHHHHHHhc
Confidence 9999999998888754
No 66
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=27.70 E-value=92 Score=27.51 Aligned_cols=52 Identities=25% Similarity=0.149 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 000257 1315 SIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHL 1366 (1774)
Q Consensus 1315 ~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~L 1366 (1774)
...|+..++.+-....+.+.+.+++++..|..+++.+++.+-..++.+|.+|
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3456666666555556667778899999999999988888888888887654
No 67
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.45 E-value=1.5e+03 Score=29.64 Aligned_cols=81 Identities=20% Similarity=0.378 Sum_probs=52.1
Q ss_pred cccchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhc
Q 000257 1192 SHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNER 1271 (1774)
Q Consensus 1192 d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~ 1271 (1774)
+..+-++|+..|..+...+... ....+..++--.+..+..+...++|-.|+- ||..|..+
T Consensus 313 ~~~V~leam~~Lt~v~~~~~~~-------------------~l~~~~l~ialrlR~l~~se~~~~R~aa~~-Lfg~L~~l 372 (533)
T KOG2032|consen 313 NEEVQLEAMKCLTMVLEKASND-------------------DLESYLLNIALRLRTLFDSEDDKMRAAAFV-LFGALAKL 372 (533)
T ss_pred ccHHHHHHHHHHHHHHHhhhhc-------------------chhhhchhHHHHHHHHHHhcChhhhhhHHH-HHHHHHHH
Confidence 3678889999888776665432 123455666666667777889999998874 66666644
Q ss_pred cCCCCHHHHHHHHHHhHH----HHHHHhh
Q 000257 1272 GSKFSASFWESIFHRVLF----PIFDHVR 1296 (1774)
Q Consensus 1272 G~~f~~~~W~~If~~VLf----Pif~~l~ 1296 (1774)
.+. -|+..|.+++. |++..+.
T Consensus 373 ~g~----~~e~~Fte~v~k~~~~lllhl~ 397 (533)
T KOG2032|consen 373 AGG----GWEEFFTEQVKKRLAPLLLHLQ 397 (533)
T ss_pred cCC----CchhhhHHHHHhccccceeeeC
Confidence 331 27777765554 5555443
No 68
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=26.88 E-value=3.6e+02 Score=37.34 Aligned_cols=162 Identities=14% Similarity=0.160 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHhccCCccc-CcHHHHH-HHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhh-hhhHHHHHHHH--H
Q 000257 1110 TIRSLIVDCIVQMIKSKVGSIKS-GWRSVFM-IFTAAADDEVESIVESAFENVEQVILEHFDQVV-GDCFMDCVNCL--I 1184 (1774)
Q Consensus 1110 eIre~IL~cL~qmI~~~~~~IkS-GWk~IF~-IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~-~~~f~dlI~cL--~ 1184 (1774)
.-|..+.+-+..+++.+-..|+| |=.-.|+ ++.++.+++++.-.-.+|..++.|..-.|+--+ .+.+=+.+-|- .
T Consensus 142 ~~R~~~~~Il~~~l~~~~~~l~s~~~D~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~F~edlFeV~~CYFPI 221 (1030)
T KOG1967|consen 142 KERLLQYEILEWFLDYRLEFLKSLGPDFLFTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGPFTEDLFEVIACYFPI 221 (1030)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCccHHHHHHHhheeeee
Confidence 35666777777888888888988 8888888 888888888888899999999998873332111 12333455554 3
Q ss_pred HHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 000257 1185 RFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVL 1264 (1774)
Q Consensus 1185 ~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtL 1264 (1774)
.|.-.+.|.+. .+.=.+-..+...+... ..+..+-+|+|.. =..++.+-+..-+++||
T Consensus 222 ~Fkppk~D~~~-I~reDL~~sLr~al~st------------------P~Fa~~~lp~LlE---KL~as~~~~K~DsL~~L 279 (1030)
T KOG1967|consen 222 TFKPPKDDTIT-IRREDLKASLRSALVST------------------PSFAPFALPLLLE---KLNASDPSAKVDSLDTL 279 (1030)
T ss_pred eccCCCCCccc-ccHHHHHHHHHHHHhcC------------------ccchhhHHHHHHH---HhccccchhhhhHHHHH
Confidence 45555555432 11111112222222211 1234455665542 22455677888999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHhHHHHHH
Q 000257 1265 FDLLNERGSKFSASFWESIFHRVLFPIFD 1293 (1774)
Q Consensus 1265 F~iL~~~G~~f~~~~W~~If~~VLfPif~ 1293 (1774)
-++...||..==-.+|...|..+=+-|++
T Consensus 280 ~ec~~~ygv~~~~~~~~~lWsaik~ei~~ 308 (1030)
T KOG1967|consen 280 NECCLKYGVRRMLPAQKKLWSAIKPEIGQ 308 (1030)
T ss_pred HHHHHHhCchhhhhhHHHHHHHHHHHHcc
Confidence 99999999652122466655433333444
No 69
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=26.76 E-value=1.8e+03 Score=30.78 Aligned_cols=167 Identities=16% Similarity=0.207 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHHHHHHH
Q 000257 1064 KIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTA 1143 (1774)
Q Consensus 1064 ~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF~IL~~ 1143 (1774)
.++...++.+-++++.+-. .|=.+.+.++....-.+...+||+.+..++..++..+| +.|.+--.+-..
T Consensus 494 Rvr~ail~~ip~la~q~~~-------~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G----~~w~~~~~i~k~ 562 (759)
T KOG0211|consen 494 RVRLAILEYIPQLALQLGV-------EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG----SEWARLEEIPKL 562 (759)
T ss_pred HHHHHHHHHHHHHHHhhhh-------HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC----cchhHHHhhHHH
Confidence 4555566666666554320 12222244443333334556899999999999999987 568765444444
Q ss_pred hhcchhH-HHHHHHH-HHHHHHHhhhhhhhhh-hh-HHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCC
Q 000257 1144 AADDEVE-SIVESAF-ENVEQVILEHFDQVVG-DC-FMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGD 1219 (1774)
Q Consensus 1144 aa~d~~e-~iV~~AF-~~l~~I~~d~~~~l~~-~~-f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~ 1219 (1774)
.+.+... -.++.++ .++.. +..+.+ +. -.++...+..++. ....||-+.+...|..+...|...
T Consensus 563 L~~~~q~~y~~R~t~l~si~~-----la~v~g~ei~~~~Llp~~~~l~~-D~vanVR~nvak~L~~i~~~L~~~------ 630 (759)
T KOG0211|consen 563 LAMDLQDNYLVRMTTLFSIHE-----LAEVLGQEITCEDLLPVFLDLVK-DPVANVRINVAKHLPKILKLLDES------ 630 (759)
T ss_pred HHHhcCcccchhhHHHHHHHH-----HHHHhccHHHHHHHhHHHHHhcc-CCchhhhhhHHHHHHHHHhhcchH------
Confidence 4432221 2222221 11111 111111 11 1233334444443 455789999999999888777521
Q ss_pred CCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000257 1220 LKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLN 1269 (1774)
Q Consensus 1220 ~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~ 1269 (1774)
...+.-.|++..|.. |+..+||-.|+..+-.+..
T Consensus 631 -------------~~~~~v~pll~~L~~---d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 631 -------------VRDEEVLPLLETLSS---DQELDVRYRAILAFGSIEL 664 (759)
T ss_pred -------------HHHHHHHHHHHHhcc---CcccchhHHHHHHHHHHHH
Confidence 123456677777665 9999999999998776655
No 70
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.54 E-value=1.4e+03 Score=31.08 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 000257 1251 DPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFY 1330 (1774)
Q Consensus 1251 d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf 1330 (1774)
-+..+||..|...||+.+---|.....+.-+.+...-..-+.+-++ ..- -.-+-.|..|++++|..|.
T Consensus 185 a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~-d~~-----------p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 185 ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLE-DPY-----------PMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhc-CCC-----------chHHHHHHHHHHHHHHHHH
Confidence 4678999999999999998888888888888888766544444333 211 2234467778888888888
Q ss_pred HHHH
Q 000257 1331 KEVC 1334 (1774)
Q Consensus 1331 ~~l~ 1334 (1774)
..+-
T Consensus 253 e~iP 256 (1005)
T KOG1949|consen 253 EMIP 256 (1005)
T ss_pred HHcC
Confidence 7554
No 71
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=25.34 E-value=1.2e+03 Score=30.34 Aligned_cols=241 Identities=12% Similarity=0.157 Sum_probs=121.2
Q ss_pred CchHHHHHHHHHHHHHHHHhccCCc------ccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 000257 1106 SRSETIRSLIVDCIVQMIKSKVGSI------KSGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDC 1179 (1774)
Q Consensus 1106 s~~~eIre~IL~cL~qmI~~~~~~I------kSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dl 1179 (1774)
.++...|-..|+.+.+++......+ ...=-+-|.+.- ..-|..++.++-.+..... .......|
T Consensus 58 d~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~-------a~si~~~~r~l~~~l~~e~---~~~~~tq~ 127 (728)
T KOG4535|consen 58 DPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMI-------ACSIRELHRCLLLALVAES---SSQTVTQI 127 (728)
T ss_pred CCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHH-------HHHHHHHHHHHHHHHHHhc---CchhHHHH
Confidence 4566667777777777665432111 101111122111 2235667777765543221 23456789
Q ss_pred HHHHHHHHhccCcccchHHHHHhHHHHHHH-hhcccCCCCCCCCCCCcccCccchhhhhH-HHHHHHHhhhcCCCCHHHH
Q 000257 1180 VNCLIRFANNKTSHRISLKAIALLRICEDR-LAEGLIPGGDLKPIDVETDATFDVTEHFW-FPMLAGLSDLTSDPRPEVR 1257 (1774)
Q Consensus 1180 I~cL~~F~~q~~d~nISL~AI~lLw~~~d~-L~~~~~~~~~~~~~~~~~~~~~~~~~~lW-~pLL~~Ls~l~~d~R~EVR 1257 (1774)
|+||...+.+.-+..+-+.=+--+|+=.+. ++... ...+.= +.++..+. -+.-+-|||.
T Consensus 128 ~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d------------------~~v~vs~l~~~~~~v-~t~~~~pei~ 188 (728)
T KOG4535|consen 128 IKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD------------------VNVRVSSLTLLGAIV-STHAPLPEVQ 188 (728)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC------------------CChhhHHHHHHHHHH-hcCCCCHHHH
Confidence 999999999887766665555555553332 22210 001110 11111111 1123455554
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhccccc------c---------cchhhhHHH---------
Q 000257 1258 SCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESL------I---------SSEDEWFRE--------- 1313 (1774)
Q Consensus 1258 ~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~------~---------~~~~~Wl~e--------- 1313 (1774)
..--+---.-=..-.+.-++++|+.++.. |-.+.......... + .....|+..
T Consensus 189 ~~~~~~~s~~n~~~~h~s~~~~~~~l~~~---~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~ 265 (728)
T KOG4535|consen 189 LLLQQPCSSSNSATPHLSPPDWWKKLPAG---PSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGST 265 (728)
T ss_pred HHhcCCCccccccCCCCCChHHHHhcCCC---chhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCc
Confidence 32100000000011233478899987754 44444432211110 0 112334221
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhCCCCCHhhHHHH
Q 000257 1314 --------TSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVGGHQFSESDWDTL 1382 (1774)
Q Consensus 1314 --------T~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~Li~~~~~~f~~~~W~~i 1382 (1774)
-|-+.|+ +...||..+...+-++...+..|+-.....+-.-|.-|+..|..+.+....++-|+.-
T Consensus 266 ~~ps~~rle~~qvl~----~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~ 338 (728)
T KOG4535|consen 266 YEPSPMRLEALQVLT----LLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAP 338 (728)
T ss_pred cCCchhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccch
Confidence 1223333 4445666666556666666777777777788778888999999999888888888753
No 72
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=24.69 E-value=1.4e+02 Score=28.46 Aligned_cols=70 Identities=13% Similarity=0.256 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcccCcHHHH
Q 000257 1059 SHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIKSGWRSVF 1138 (1774)
Q Consensus 1059 ~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~IkSGWk~IF 1138 (1774)
.+++..++..|+..|.++. ..+.+.++...+ ...++.||..++..|.++ |.+..+
T Consensus 10 ~~~~~~vr~~a~~~L~~~~--------------~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i----------~~~~~~ 64 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG--------------DPEAIPALIELL-KDEDPMVRRAAARALGRI----------GDPEAI 64 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT--------------HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC----------HHHHTH
T ss_pred cCCCHHHHHHHHHHHHHcC--------------CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----------CCHHHH
Confidence 5888999999998886221 124566666666 467889999999999875 345555
Q ss_pred HHHHHhhcchhHHHH
Q 000257 1139 MIFTAAADDEVESIV 1153 (1774)
Q Consensus 1139 ~IL~~aa~d~~e~iV 1153 (1774)
..|.....++....|
T Consensus 65 ~~L~~~l~~~~~~~v 79 (88)
T PF13646_consen 65 PALIKLLQDDDDEVV 79 (88)
T ss_dssp HHHHHHHTC-SSHHH
T ss_pred HHHHHHHcCCCcHHH
Confidence 555555554433343
No 73
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=24.53 E-value=8.3e+02 Score=32.54 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=57.2
Q ss_pred cCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhh
Q 000257 1132 SGWRSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLA 1211 (1774)
Q Consensus 1132 SGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~ 1211 (1774)
-+-..+|-.+-..+.|....+=.-|++.++.|++-+...=...-..-++..+.+-.=+ ..--|++-++.+-.|++...
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWr--tK~aslellg~m~~~ap~qL 289 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWR--TKMASLELLGAMADCAPKQL 289 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhh--hHHHHHHHHHHHHHhchHHH
Confidence 3444555544445555555566667888877776544322222223333333322111 11233333443333333322
Q ss_pred cccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 000257 1212 EGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFD 1266 (1774)
Q Consensus 1212 ~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~ 1266 (1774)
+ ..---+.-.++++..|..+|||+.|+++|-+
T Consensus 290 s-----------------------~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 290 S-----------------------LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred H-----------------------HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 1 1222356677888889999999999987655
No 74
>PRK09687 putative lyase; Provisional
Probab=24.22 E-value=9.9e+02 Score=28.91 Aligned_cols=160 Identities=19% Similarity=0.161 Sum_probs=88.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHHhhhhhHHHHHhcCchHHHHHHHHHHHHHHHHhccCCcc
Q 000257 1052 NHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSRSETIRSLIVDCIVQMIKSKVGSIK 1131 (1774)
Q Consensus 1052 ~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~~~eIre~IL~cL~qmI~~~~~~Ik 1131 (1774)
+.+...-.|++..||..|+..|+++.. .+.+.++..+ ..+.++.+|...+..|.++-....
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~--------------~~~~~~l~~l-l~~~d~~vR~~A~~aLg~lg~~~~---- 86 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGG--------------QDVFRLAIEL-CSSKNPIERDIGADILSQLGMAKR---- 86 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCc--------------chHHHHHHHH-HhCCCHHHHHHHHHHHHhcCCCcc----
Confidence 344555578899999999999875531 2333444443 346688999999999999532211
Q ss_pred cCcHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHHHHh
Q 000257 1132 SGWRSVFMIFTAA-ADDEVESIVESAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRL 1210 (1774)
Q Consensus 1132 SGWk~IF~IL~~a-a~d~~e~iV~~AF~~l~~I~~d~~~~l~~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L 1210 (1774)
+=..+|..|... ..|++..+-..|...+-.+....... ...++.-+....... +..+-+.|+.-|-.+.+
T Consensus 87 -~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 87 -CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDK-STNVRFAVAFALSVIND-- 157 (280)
T ss_pred -chHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCC-CHHHHHHHHHHHhccCC--
Confidence 123466777655 45555445456666665543322100 111222222222222 33444444444321100
Q ss_pred hcccCCCCCCCCCCCcccCccchhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 000257 1211 AEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSDPRPEVRSCALEVLFDL 1267 (1774)
Q Consensus 1211 ~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~i 1267 (1774)
. ..+..|..+..|+.++||..|+..|-++
T Consensus 158 ------------------------~----~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 158 ------------------------E----AAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred ------------------------H----HHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 0 0233444555688999999999999876
No 75
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=23.86 E-value=5.8e+02 Score=28.78 Aligned_cols=118 Identities=24% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 000257 1251 DPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNLFNTFY 1330 (1774)
Q Consensus 1251 d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~LF~~yf 1330 (1774)
|.-.|+|+.|.++|+.+|..-.+... +..+++.+...-.+. .+-..++...+.++-...-
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~-----------~~~~~~~v~~GL~D~---------~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRID-----------ISEFLDRVEAGLKDE---------HDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS------------HHHHHHHHHHTTSS----------HHHHHHHHHHHHHHHHS-H
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCC-----------HHHHHHHHHhhcCCc---------HHHHHHHHHHHHHHHHhCH
Q ss_pred HHHHHhHHHHHHHHHHhhcCC------------ChhHHHHHHHHHHHH-HHHhCCCCCHhhHHHHHHHHHH
Q 000257 1331 KEVCFMLPPLLSLLLDCAKKP------------DQSVVSISLGALVHL-IEVGGHQFSESDWDTLLKSIRD 1388 (1774)
Q Consensus 1331 ~~l~~~L~~~l~lL~~ci~q~------------n~~ia~ig~~~L~~L-i~~~~~~f~~~~W~~i~~~~~~ 1388 (1774)
..+..-|+.+..-|..-+... .+++.|.++.|...| -.--+..-+...|...++.++.
T Consensus 98 ~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~~~f~~~i~~ 168 (169)
T PF08623_consen 98 EEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKWNEFVEWIKK 168 (169)
T ss_dssp HHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHhc
No 76
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.15 E-value=5.2e+02 Score=25.59 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 000257 1312 RETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVH 1365 (1774)
Q Consensus 1312 ~eT~~~aL~~lv~LF~~yf~~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~~L~~ 1365 (1774)
.+.....++.+..+...+.+.|..=++-++.+|......+++.+.+.|..|++.
T Consensus 32 ~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 32 IDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 567778888899999888899987789999999999999999999999998864
No 77
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.82 E-value=2.2e+03 Score=29.90 Aligned_cols=216 Identities=19% Similarity=0.200 Sum_probs=118.6
Q ss_pred cCchHHHHHHHHHHHHHHHHhccCCc-ccCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHH-hhhh-------------h
Q 000257 1105 NSRSETIRSLIVDCIVQMIKSKVGSI-KSGWRSVFMIFTAAADDEVESIVESAFENVEQVI-LEHF-------------D 1169 (1774)
Q Consensus 1105 ~s~~~eIre~IL~cL~qmI~~~~~~I-kSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~I~-~d~~-------------~ 1169 (1774)
+++-.+=|.-.++.|+.+-..+-..+ .+|-++++.+|..=-.| +.++..+.+++--++ ++.+ +
T Consensus 33 ssTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D--~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g 110 (970)
T KOG0946|consen 33 SSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMD--PEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLG 110 (970)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCC--HHHHHHHHHHHHHHHhcCcchhhcccchhhhHHH
Confidence 45555666666777776655544333 46888888888775544 458888888774333 2222 1
Q ss_pred hhhhhhH---HHHHHHHHHHHhccCcccchHHHHHhHHHHHHHhhcccCCCCCCCCCCCcccCccchhhhhHHH-HHHHH
Q 000257 1170 QVVGDCF---MDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFP-MLAGL 1245 (1774)
Q Consensus 1170 ~l~~~~f---~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~p-LL~~L 1245 (1774)
.-..+.| .|.|.||..|.... |-.+-+.||.+|-.+-...... . .+. -+=+| =...|
T Consensus 111 ~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e----~------------q~~--ll~~P~gIS~l 171 (970)
T KOG0946|consen 111 LWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTE----L------------QDA--LLVSPMGISKL 171 (970)
T ss_pred HHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHH----H------------HHH--HHHCchhHHHH
Confidence 1122333 36788888888754 5568889999877653322100 0 000 00011 14566
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHH
Q 000257 1246 SDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEWFRETSIHSLQLLCNL 1325 (1774)
Q Consensus 1246 s~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPif~~l~~~~~~~~~~~~~~Wl~eT~~~aL~~lv~L 1325 (1774)
.++..|.|.-||+-||=.|-.+.+..++.=.--.++.+| -.+|+-+....- .+..-..+-|..-+.++-+=
T Consensus 172 mdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaF----erLfsIIeeEGg-----~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 172 MDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAF----ERLFSIIEEEGG-----LDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred HHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHH----HHHHHHHHhcCC-----CCCcchHHHHHHHHHHHHhh
Confidence 677789999999999998888888777643333344444 344554442211 11111233333333333221
Q ss_pred HH---HHHHHHHHhHHHHHHHHHHhhcCC
Q 000257 1326 FN---TFYKEVCFMLPPLLSLLLDCAKKP 1351 (1774)
Q Consensus 1326 F~---~yf~~l~~~L~~~l~lL~~ci~q~ 1351 (1774)
-. +||..= ..++++..+|.+++-++
T Consensus 243 N~SNQ~~FrE~-~~i~rL~klL~~f~~~d 270 (970)
T KOG0946|consen 243 NISNQNFFREG-SYIPRLLKLLSVFEFGD 270 (970)
T ss_pred CcchhhHHhcc-ccHHHHHhhcCcccccC
Confidence 11 233221 23677777777777765
No 78
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=22.28 E-value=1.2e+03 Score=34.06 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=37.5
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 000257 1240 PMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFH 1285 (1774)
Q Consensus 1240 pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~ 1285 (1774)
-.+..|.+-..+++-|+|.+|--.++++++.||..++...-+.++-
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~ 122 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLI 122 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHH
Confidence 3455666666789999999999999999999999999866555553
No 79
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=22.17 E-value=1.5e+02 Score=23.30 Aligned_cols=27 Identities=7% Similarity=0.087 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000257 1051 ANHFISAGSHHDEKIAMYAIDSLRQLS 1077 (1774)
Q Consensus 1051 ~~hf~~vg~~~n~~va~~AiDsLrQLs 1077 (1774)
-++|.+..++++..||..|+..|.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 356778888999999999999998876
No 80
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.15 E-value=77 Score=35.92 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=30.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHHhhcCcc
Q 000257 113 LVLNPLRLAIETKNLKLLESALDCLHKLIAYDHL 146 (1774)
Q Consensus 113 ~i~~Pf~LAc~sks~ki~~~ALdcLqKLis~~~i 146 (1774)
.+..|++-|..|+++.+...+|.|||+|+..+-.
T Consensus 80 qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 80 QLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 5789999999999999999999999999765433
No 81
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=20.64 E-value=1.4e+03 Score=27.95 Aligned_cols=177 Identities=14% Similarity=0.201 Sum_probs=92.7
Q ss_pred ccchHHHHHHHHhhcccccccchH-------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcchhhHH
Q 000257 1021 RVFSLQKLVEISYYNMARIRMVWA-------RIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELTNFTFQN 1093 (1774)
Q Consensus 1021 r~FsLqKLvEVa~~Nm~Rirl~W~-------~IW~vl~~hf~~vg~~~n~~va~~AiDsLrQLs~kfLe~eEL~~f~fQ~ 1093 (1774)
.-|.|..+.|+...+..|....-. ..|..+ .+...+++..+...|.-.|..|.. ...........
T Consensus 74 v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~f----l~ll~~~D~~i~~~a~~iLt~Ll~----~~~~~~~~~~~ 145 (312)
T PF03224_consen 74 VQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPF----LKLLDRNDSFIQLKAAFILTSLLS----QGPKRSEKLVK 145 (312)
T ss_dssp HHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHH----HHH-S-SSHHHHHHHHHHHHHHHT----STTT--HHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHH----HHHhcCCCHHHHHHHHHHHHHHHH----cCCccccchHH
Confidence 458888999988877776653221 134433 334556688887777766654432 22222222235
Q ss_pred hhhhhHHHHHhc---CchHHHHHHHHHHHHHHHHhccCCc----ccCcHHHHHHHHHhhcchhHHHHHHHHHHHHH-HHh
Q 000257 1094 DILKPFVVLIRN---SRSETIRSLIVDCIVQMIKSKVGSI----KSGWRSVFMIFTAAADDEVESIVESAFENVEQ-VIL 1165 (1774)
Q Consensus 1094 ~fLkPFe~im~~---s~~~eIre~IL~cL~qmI~~~~~~I----kSGWk~IF~IL~~aa~d~~e~iV~~AF~~l~~-I~~ 1165 (1774)
++|.+|...+.+ +.+.+++...++|+..++....... ..|=..++.++...+...+..-+..-|+++-- .+-
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 778888776654 3456778999999999985532211 23566777777544444444556666766531 112
Q ss_pred hhhhhhh---hhhHHHHHHHHHHHHhccCcccchHHHHHhHHHHH
Q 000257 1166 EHFDQVV---GDCFMDCVNCLIRFANNKTSHRISLKAIALLRICE 1207 (1774)
Q Consensus 1166 d~~~~l~---~~~f~dlI~cL~~F~~q~~d~nISL~AI~lLw~~~ 1207 (1774)
.|-..+. ...+ +|..|.+.++...-.+|.--++..|+++.
T Consensus 226 SF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 226 SFEPEIAEELNKKY--LIPLLADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp TTSHHHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHhccc--hHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2222221 1222 66677777776666777777777777754
No 82
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=20.43 E-value=3.4e+02 Score=28.98 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh--hhhhcchhhHHhhhhhHHHHHhc--CchHHHHHHHHHHHHHHHHhcc
Q 000257 1060 HHDEKIAMYAIDSLRQLSMKYLE--RAELTNFTFQNDILKPFVVLIRN--SRSETIRSLIVDCIVQMIKSKV 1127 (1774)
Q Consensus 1060 ~~n~~va~~AiDsLrQLs~kfLe--~eEL~~f~fQ~~fLkPFe~im~~--s~~~eIre~IL~cL~qmI~~~~ 1127 (1774)
|+|+.+..+|+..|..+..-.-. +.|.+. ++||..+..++.. ..+.+||+.+++.|...-..++
T Consensus 48 ~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s----~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 48 YGNPHVQLLALTLLELLVKNCGKPFHLQVAD----KEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHhCChHHHHHHhh----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 67888999998888766542211 122222 4666667777765 5788999999999987655544
Done!