Query 000257
Match_columns 1774
No_of_seqs 404 out of 1154
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 15:58:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000257.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_37-41//hhsearch_pdb/000257hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 1.0 1 1 471.3 21.2 198 578-775 9-208 (211)
2 1r8s_E ARNO; protein transport 1.0 1 1 466.9 20.8 194 582-775 7-200 (203)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 455.3 19.6 196 578-775 14-226 (230)
4 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 435.7 21.0 192 585-776 12-203 (347)
5 1xsz_A Guanine nucleotide exch 1.0 1 1 432.8 18.6 189 587-775 7-200 (356)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 53.4 27.4 234 1108-1375 569-819 (861)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 51.5 21.2 125 1237-1370 1003-1134(1230)
8 1ibr_B P95, importin beta-1 su 1.0 1 1 50.5 21.0 309 1051-1387 130-457 (462)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 48.1 35.9 18 1254-1271 727-744 (852)
10 1qgr_A Protein (importin beta 1.0 1 1 47.9 25.2 21 1253-1273 811-831 (876)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=471.27 Aligned_cols=198 Identities=46% Similarity=0.776 Sum_probs=194.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 20699998546999999999604915668999978998899599999977047999588983105798727999999997
Q 000257 578 PDNFEKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVD 657 (1774)
Q Consensus 578 ~~~~e~~k~~K~~l~~~i~~FN~kpkkGI~~L~~~g~i~~~p~~iA~fL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~ 657 (1774)
..|||.+|+||..+++|+.+||+|||+||+||+++|+++++|++||+||+.+++|||++||+|||+++++|..||++|++
T Consensus 9 ~~~~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~ 88 (211)
T 3ltl_A 9 GTQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVD 88 (211)
T ss_dssp ------CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 00789999988999999999832999999999986998999999999998476754999999870466268999999998
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 0899998716999999701789985589999999999999861999--99982379999999998403788998889999
Q 000257 658 SMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPG--LFKNADTAYVLAYSVILLNTDAHNPMVWPKMT 735 (1774)
Q Consensus 658 ~~dF~~~~~~~ALR~fl~~frLPgEaQ~IdRime~Fa~ry~~~Np~--~f~sad~~yvLaysiimLnTDlHn~~vk~kmt 735 (1774)
.|||+|++||+|||.||.+||||||+|+||||||+||+|||+|||+ +|.|+|++|+|+||+||||||+|||+||+|||
T Consensus 89 ~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt 168 (211)
T 3ltl_A 89 QHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMT 168 (211)
T ss_dssp TSCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCC
T ss_pred HCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 55988997999999999737179842699999999999999858887774788899999999999856414864568989
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 7677762036898862319999999999630435555001
Q 000257 736 KSDFVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDV 775 (1774)
Q Consensus 736 ~~~Fi~~n~~~~~~~~lp~e~L~~iY~~I~~~~i~l~~~~ 775 (1774)
+++|++|++|+|+|+|+|+|||..||++|+++||+|+++.
T Consensus 169 ~~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 208 (211)
T 3ltl_A 169 KEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETK 208 (211)
T ss_dssp HHHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC---
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999998654367899999999999999984876278998
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=466.87 Aligned_cols=194 Identities=46% Similarity=0.782 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99985469999999996049156689999789988995999999770479995889831057987279999999970899
Q 000257 582 EKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKF 661 (1774)
Q Consensus 582 e~~k~~K~~l~~~i~~FN~kpkkGI~~L~~~g~i~~~p~~iA~fL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF 661 (1774)
++.|++|+.++.|+.+||.|||+||+||+++|+++++|++||+||+.+++|||++||+|||+++++|..||++|++.|||
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~fdF 86 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEF 86 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 34888889999999998129999999999879999999999999987768589999999851443799999999996497
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 99871699999970178998558999999999999986199999982379999999998403788998889999767776
Q 000257 662 SGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVR 741 (1774)
Q Consensus 662 ~~~~~~~ALR~fl~~frLPgEaQ~IdRime~Fa~ry~~~Np~~f~sad~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~ 741 (1774)
+|++||+|||.||.+||||||+|+|||+|++||+|||+|||+.|.++|++|+|+||+||||||+|||+||+|||+++|++
T Consensus 87 ~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~Fi~ 166 (203)
T 1r8s_E 87 TDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVA 166 (203)
T ss_dssp TTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 89968999999997261787168999999999999998497656781167999989988651004742223467999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 2036898862319999999999630435555001
Q 000257 742 MNAVNDAEECASTELLEEIYDSIVKEEIKMKDDV 775 (1774)
Q Consensus 742 ~n~~~~~~~~lp~e~L~~iY~~I~~~~i~l~~~~ 775 (1774)
|++|+|+|+|+|+++|..||++|+.+||+|++++
T Consensus 167 n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~ 200 (203)
T 1r8s_E 167 MNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDD 200 (203)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC-
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8626657899999999999999984878896576
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=455.28 Aligned_cols=196 Identities=33% Similarity=0.543 Sum_probs=187.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC-CHHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 2069999854699999999960491566899997899889-959999997704-79995889831057987279999999
Q 000257 578 PDNFEKAKAHKSTMEAAISEFNRKPVKGVEYLISNKLVDN-DPTSVAQFLRNA-ANLDKAMIGDYLGQHEEFPVAVMHAY 655 (1774)
Q Consensus 578 ~~~~e~~k~~K~~l~~~i~~FN~kpkkGI~~L~~~g~i~~-~p~~iA~fL~~~-~~Ldk~~iGeyLg~~~~~~~~vl~~y 655 (1774)
+.+++++|++|..+.+|+.+||+|||+||+||+++|++++ +|++||+||+.+ ++|||++||+|||+++ +..||++|
T Consensus 14 ~~~~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~vL~~y 91 (230)
T 1ku1_A 14 LVPRGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSLLNEY 91 (230)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCC--HHHHHHHH
T ss_conf 8699999999999999999995499999999998898389998999999997276569999999980821--79999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC---------------CCCCCHHHHHHHHHHHHH
Q ss_conf 97089999871699999970178998558999999999999986199---------------999982379999999998
Q 000257 656 VDSMKFSGMKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNP---------------GLFKNADTAYVLAYSVIL 720 (1774)
Q Consensus 656 v~~~dF~~~~~~~ALR~fl~~frLPgEaQ~IdRime~Fa~ry~~~Np---------------~~f~sad~~yvLaysiim 720 (1774)
++.|||+|++||+|||.||.+||||||+|+||||||+||+|||+||| ++|.++|+||+|+||+||
T Consensus 92 v~~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiIm 171 (230)
T 1ku1_A 92 IRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIM 171 (230)
T ss_dssp HHTSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 85426799979999999998085885199999999999999998187775321010011223455770289999999999
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 4037889988899997677762036898862319999999999630435555001
Q 000257 721 LNTDAHNPMVWPKMTKSDFVRMNAVNDAEECASTELLEEIYDSIVKEEIKMKDDV 775 (1774)
Q Consensus 721 LnTDlHn~~vk~kmt~~~Fi~~n~~~~~~~~lp~e~L~~iY~~I~~~~i~l~~~~ 775 (1774)
||||+|||+||+|||+++|++|+||+|+|+|+|++||..||++|+.+||+|++|+
T Consensus 172 LNTDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~ 226 (230)
T 1ku1_A 172 LNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEH 226 (230)
T ss_dssp HHHHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC---
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8013026434677779999998646567788889999999999984834688667
No 4
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=435.69 Aligned_cols=192 Identities=42% Similarity=0.748 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 85469999999996049156689999789988995999999770479995889831057987279999999970899998
Q 000257 585 KAHKSTMEAAISEFNRKPVKGVEYLISNKLVDNDPTSVAQFLRNAANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSGM 664 (1774)
Q Consensus 585 k~~K~~l~~~i~~FN~kpkkGI~~L~~~g~i~~~p~~iA~fL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~~ 664 (1774)
|++|..+.+|+.+||.+||+||+||+++|++.++|++||+||+.+++|||.+||+|||+++++|..||++|++.|||+|+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~~~ 91 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADL 91 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 88999999999998239999999999879999999999999985727578999998658970689999999995386899
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 71699999970178998558999999999999986199999982379999999998403788998889999767776203
Q 000257 665 KFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVWPKMTKSDFVRMNA 744 (1774)
Q Consensus 665 ~~~~ALR~fl~~frLPgEaQ~IdRime~Fa~ry~~~Np~~f~sad~~yvLaysiimLnTDlHn~~vk~kmt~~~Fi~~n~ 744 (1774)
+||+|||.||.+||||||+|+|||+||+||+|||+|||++|.++|++|+|+||+||||||+|||++|+|||+++|++|++
T Consensus 92 ~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~n~~ 171 (347)
T 2r09_A 92 NLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNR 171 (347)
T ss_dssp CHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 79999999997286897267899999999999998598656785489999999999705640530124587999998751
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 68988623199999999996304355550012
Q 000257 745 VNDAEECASTELLEEIYDSIVKEEIKMKDDVA 776 (1774)
Q Consensus 745 ~~~~~~~lp~e~L~~iY~~I~~~~i~l~~~~~ 776 (1774)
+++++.++|+++|..+|++|..+|+.++++.+
T Consensus 172 ~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 172 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp TTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 12677778999999997743137654554455
No 5
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=432.80 Aligned_cols=189 Identities=34% Similarity=0.535 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCC--CCCHHHHHHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 46999999999604915668999978998--8995999999770-47999588983105798727999999997089999
Q 000257 587 HKSTMEAAISEFNRKPVKGVEYLISNKLV--DNDPTSVAQFLRN-AANLDKAMIGDYLGQHEEFPVAVMHAYVDSMKFSG 663 (1774)
Q Consensus 587 ~K~~l~~~i~~FN~kpkkGI~~L~~~g~i--~~~p~~iA~fL~~-~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~~dF~~ 663 (1774)
.|+...+|+.+||+|||+||+||++.+.. .++|.+||+||+. +++|||.+||+|||+++++|..||++|++.|||+|
T Consensus 7 ~~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~g 86 (356)
T 1xsz_A 7 IEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNG 86 (356)
T ss_dssp HHHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999815999999999986001589999999999984587889999999985784578999999999669799
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCCCHHHHHH
Q ss_conf 87169999997017899855899999999999998619999998237999999999840378899888--9999767776
Q 000257 664 MKFDTAIRELLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYSVILLNTDAHNPMVW--PKMTKSDFVR 741 (1774)
Q Consensus 664 ~~~~~ALR~fl~~frLPgEaQ~IdRime~Fa~ry~~~Np~~f~sad~~yvLaysiimLnTDlHn~~vk--~kmt~~~Fi~ 741 (1774)
++||+|||.||.+||||||+|+|||+||+||+|||+|||+.|.++|++|+|+||+||||||+|||+|| +|||+++|++
T Consensus 87 ~~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFik 166 (356)
T 1xsz_A 87 QSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKR 166 (356)
T ss_dssp SCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 98999999999828488508899999999999999739986687438999999999862100386555457898999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 2036898862319999999999630435555001
Q 000257 742 MNAVNDAEECASTELLEEIYDSIVKEEIKMKDDV 775 (1774)
Q Consensus 742 ~n~~~~~~~~lp~e~L~~iY~~I~~~~i~l~~~~ 775 (1774)
|++|+|+|+|+|+|+|..||++|+.+||++....
T Consensus 167 N~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 200 (356)
T 1xsz_A 167 NLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVK 200 (356)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCS
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8544468788989999999999970877557755
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=53.43 Aligned_cols=234 Identities=12% Similarity=0.215 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_conf 3889999999999999802687666828999999984105159-999999999999984---112230352498999999
Q 000257 1108 SETIRSLIVDCIVQMIKSKVGSIKSGWRSVFMIFTAAADDEVE-SIVESAFENVEQVIL---EHFDQVVGDCFMDCVNCL 1183 (1774)
Q Consensus 1108 ~~eVre~IL~cL~qlI~~~~~~IkSGWk~IF~IL~~aa~d~~e-~iV~~aF~~l~~I~~---d~f~~l~~~~f~dlI~cL 1183 (1774)
..++|..+++++..++...+..+..--..++..+.....+... .+-..++..+..+.. +.|. ..+..++..+
T Consensus 569 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~----~~l~~i~~~l 644 (861)
T 2bpt_A 569 LQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE----KYLETFSPYL 644 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_conf 999999999999999998556347899999999999974678875799999999999999766099----9999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCHHHHHHHH
Q ss_conf 99982357601059999968997999630668999888887766675431456289999987431189--9878899999
Q 000257 1184 IRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGDLKPIDVETDATFDVTEHFWFPMLAGLSDLTSD--PRPEVRSCAL 1261 (1774)
Q Consensus 1184 ~~F~~q~~~~niSL~AI~lL~~i~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d--~R~EVR~~AL 1261 (1774)
.+..+ ..+.++-..|++.+-.+...+... ...+--.++..+.....+ .+++||..|+
T Consensus 645 ~~~l~-~~~~~vr~~a~~~l~~l~~~~~~~--------------------~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~ 703 (861)
T 2bpt_A 645 LKALN-QVDSPVSITAVGFIADISNSLEED--------------------FRRYSDAMMNVLAQMISNPNARRELKPAVL 703 (861)
T ss_dssp HHHHH-CTTSHHHHHHHHHHHHHHHHTGGG--------------------GHHHHHHHHHHHHHHHHCTTCCTTHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHHHHHCHH--------------------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 98865-566789999999999999874540--------------------311199999999997278655676659999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999986069999779999999967979998663123566665034---6---9988999999999999999999987
Q 000257 1262 EVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDE---W---FRETSIHSLQLLCNLFNTFYKEVCF 1335 (1774)
Q Consensus 1262 qtLF~iL~~~G~~f~~~~W~~If~~VLfPIf~~l~~~~~~~~~~~~~~---W---l~eT~~~aL~~lv~Lf~~yf~~l~~ 1335 (1774)
..|-++....|..|.+ .+..++-+++..+..... ..+.+ . +.++...++.+++.-+...-..+..
T Consensus 704 ~~l~~l~~~~~~~~~~-----~l~~~l~~l~~~~~~~~~----~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~ 774 (861)
T 2bpt_A 704 SVFGDIASNIGADFIP-----YLNDIMALCVAAQNTKPE----NGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFP 774 (861)
T ss_dssp HHHHHHHHHHGGGGHH-----HHHHHHHHHHHHHTCCCS----SSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGG
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 9999999984050899-----999999999999736789----9975889999999999999999999998267788999
Q ss_pred HHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHH-CCCCC
Q ss_conf 4798999999934289----8037899899999999980-99999
Q 000257 1336 MLPPLLSLLLDCAKKP----DQSVVSISLGALVHLIEVG-GHQFS 1375 (1774)
Q Consensus 1336 ~L~~~l~lL~~ci~q~----n~~ia~ig~~cL~~Li~~~-~~~f~ 1375 (1774)
.++.++..|..+.... ++.+.+.+..++..|...- |+.|.
T Consensus 775 ~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~ 819 (861)
T 2bpt_A 775 YVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIK 819 (861)
T ss_dssp GHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTG
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 999999999998748555786999999999999999882882488
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=51.46 Aligned_cols=125 Identities=14% Similarity=0.186 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC------CCCCC-CHHH
Q ss_conf 2899999874311899878899999999999986069999779999999967979998663123------56666-5034
Q 000257 1237 FWFPMLAGLSDLTSDPRPEVRSCALEVLFDLLNERGSKFSASFWESIFHRVLFPIFDHVRHAGK------ESLIS-SEDE 1309 (1774)
Q Consensus 1237 lW~pLL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~If~~VLfPIf~~l~~~~~------~~~~~-~~~~ 1309 (1774)
+.-+++..|.....|+.++||..|+.+|-.+....+..+.+ .+..+|-+++.......+ ...+. ..++
T Consensus 1003 ~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~-----~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~ 1077 (1230)
T 1u6g_C 1003 LLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRD-----LLDTVLPHLYNETKVRKELIREVEMGPFKHTVDD 1077 (1230)
T ss_dssp HHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGG-----GHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEET
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHH-----HHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCC
T ss_conf 89998999998648985879999999999998428576897-----7988989999883026876013305896023677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 6998899999999999999999998747989999999342898037899899999999980
Q 000257 1310 WFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPDQSVVSISLGALVHLIEVG 1370 (1774)
Q Consensus 1310 Wl~eT~~~aL~~lv~Lf~~yf~~l~~~L~~~l~lL~~ci~q~n~~ia~ig~~cL~~Li~~~ 1370 (1774)
. .+.+..|...+.+++.+.++.+. +..++..+..-... ++.+...+...+.+|+..+
T Consensus 1078 ~-l~~rk~a~~~~~~ll~~~~~~i~--~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~ 1134 (1230)
T 1u6g_C 1078 G-LDIRKAAFECMYTLLDSCLDRLD--IFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLC 1134 (1230)
T ss_dssp H-HHHHHHHHHHHHHHHHSSCSSSC--HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSC
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHCC
T ss_conf 4-89999999999999998887478--99999999804676-6889999999999998408
No 8
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=50.48 Aligned_cols=309 Identities=10% Similarity=0.132 Sum_probs=148.5
Q ss_pred HHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999711799--8999999999999999998555310242258764414999982073-38899999999999998026
Q 000257 1051 ANHFISAGSHH--DEKIAMYAIDSLRQLSMKYLERAELTNFTFQNDILKPFVVLIRNSR-SETIRSLIVDCIVQMIKSKV 1127 (1774)
Q Consensus 1051 ~~hf~~vg~h~--n~~ia~~AiDsLrQLs~kfLe~eEL~~f~fQ~~fLkPFe~im~~s~-~~eVre~IL~cL~qlI~~~~ 1127 (1774)
-+.+.+..... +..++..|+..|+.++.++.. +.+. .+-..++..|...+.+.. +.+||...++|+..++....
T Consensus 130 l~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-~~~~--~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP-EQLQ--DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG-GGTG--GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-HHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998626788789999999999999981871-5347--679999999999867999989999999999999999999
Q ss_pred CCCCCCC---HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 8766682---8999999984105159999999999999984112230352498-99999999982357601059999968
Q 000257 1128 GSIKSGW---RSVFMIFTAAADDEVESIVESAFENVEQVILEHFDQVVGDCFM-DCVNCLIRFANNKTSHRISLKAIALL 1203 (1774)
Q Consensus 1128 ~~IkSGW---k~IF~IL~~aa~d~~e~iV~~aF~~l~~I~~d~f~~l~~~~f~-dlI~cL~~F~~q~~~~niSL~AI~lL 1203 (1774)
.+. ..| ..++.++.....+++..+...+++++..+...+-..+. ..+. .++..+....+ ..+.++...|++++
T Consensus 207 ~~~-~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 207 ANF-DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME-TYMGPALFAITIEAMK-SDIDEVALQGIEFW 283 (462)
T ss_dssp HHH-TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT-TTTTTTHHHHHHHHHH-CSSHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 843-23678989999999853799789999999999999999899999-8888899999999982-88609999999999
Q ss_pred HHHHHHHHCCC-CCCCCCCCCCCCC--CCCCCH---HHHHHHHHHHH-HHHHC---CCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99799963066-8999888887766--675431---45628999998-74311---899878899999999999986069
Q 000257 1204 RICEDRLAEGL-IPGGDLKPIDVET--DATFDV---TEHFWFPMLAG-LSDLT---SDPRPEVRSCALEVLFDLLNERGS 1273 (1774)
Q Consensus 1204 ~~i~d~L~~~~-~~~~~~~~~~~~~--~~~~~~---~~~lW~pLL~~-Ls~l~---~d~R~EVR~~ALqtLF~iL~~~G~ 1273 (1774)
..+++...... ..+.. ..+... ...... +..-.+|.+.. |.+.- .+....+|..|...|-.+....|.
T Consensus 284 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~ 361 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEA--AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (462)
T ss_dssp HHHHHHHHHHHHHHCCT--TCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 99999888788760100--0037886303599999876640079999987444444444332889999999999986358
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9997799999999679799986631235666650346-998899999999999999999998747989999999342898
Q 000257 1274 KFSASFWESIFHRVLFPIFDHVRHAGKESLISSEDEW-FRETSIHSLQLLCNLFNTFYKEVCFMLPPLLSLLLDCAKKPD 1352 (1774)
Q Consensus 1274 ~f~~~~W~~If~~VLfPIf~~l~~~~~~~~~~~~~~W-l~eT~~~aL~~lv~Lf~~yf~~l~~~L~~~l~lL~~ci~q~n 1352 (1774)
.++ ..++|.+..... +..| ..+....++..+++-.. -+.+...++.++..+..++..++
T Consensus 362 --------~~~-~~~~~~l~~~l~---------~~~~~~r~aal~~l~~l~~~~~--~~~~~~~l~~~~~~l~~~l~d~~ 421 (462)
T 1ibr_B 362 --------DIV-PHVLPFIKEHIK---------NPDWRYRDAAVMAFGCILEGPE--PSQLKPLVIQAMPTLIELMKDPS 421 (462)
T ss_dssp --------THH-HHHHHHHHHHTT---------CSSHHHHHHHHHHHHHTSSSSC--TTTTCTTTTTHHHHHHHGGGCSC
T ss_pred --------HHH-HHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf --------789-999999999843---------8975899999999999864876--77789889999999999966997
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHH
Q ss_conf 0378998999999999809999-9766999999999
Q 000257 1353 QSVVSISLGALVHLIEVGGHQF-SESDWDTLLKSIR 1387 (1774)
Q Consensus 1353 ~~ia~ig~~cL~~Li~~~~~~f-~~~~W~~i~~~~~ 1387 (1774)
..+...++.+|.++....++.+ ....-..++..+.
T Consensus 422 ~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 422 VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 899999999999999862011465778999999999
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=48.06 Aligned_cols=18 Identities=6% Similarity=-0.267 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 788999999999999860
Q 000257 1254 PEVRSCALEVLFDLLNER 1271 (1774)
Q Consensus 1254 ~EVR~~ALqtLF~iL~~~ 1271 (1774)
..|+..|+.++.++...+
T Consensus 727 ~~~~~~a~~~igrl~~~~ 744 (852)
T 4fdd_A 727 KTLLENTAITIGRLGYVC 744 (852)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHC
T ss_conf 207788999999999868
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=47.91 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCC
Q ss_conf 878899999999999986069
Q 000257 1253 RPEVRSCALEVLFDLLNERGS 1273 (1774)
Q Consensus 1253 R~EVR~~ALqtLF~iL~~~G~ 1273 (1774)
..+||..|+.+|-++....|.
T Consensus 811 ~~~vr~~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 811 TDGVVACAAGLIGDLCTAFGK 831 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHCC
T ss_conf 889999999999999988284
Done!