Query 000258
Match_columns 1771
No_of_seqs 221 out of 375
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 16:37:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000258.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_37-41//hhsearch_pdb/000258hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 29.6 2.8 135 1149-1295 224-363 (802)
2 2ysr_A DEP domain-containing p 1.0 1 1 19.6 -1.0 33 645-677 8-40 (105)
3 2zpa_A Uncharacterized protein 1.0 1 1 18.7 -1.7 11 248-258 108-118 (671)
4 3n4p_A Terminase subunit UL89 1.0 1 1 17.4 1.5 55 638-702 141-195 (279)
5 2bsz_A Arylamine N-acetyltrans 1.0 1 1 15.5 -2.0 17 1208-1224 177-193 (278)
6 2vfb_A Arylamine N-acetyltrans 1.0 1 1 15.5 -1.5 16 1208-1223 177-192 (280)
7 1w5r_A Arylamine N-acetyltrans 1.0 1 1 15.4 -1.5 16 1208-1223 180-195 (278)
8 3fgr_B Putative phospholipase 1.0 1 1 15.3 0.7 15 1244-1258 328-342 (357)
9 3f4m_A Tumor necrosis factor, 1.0 1 1 15.1 -3.8 28 722-749 92-119 (161)
10 2lai_A Avirulence protein ATR1 1.0 1 1 14.7 -2.9 12 938-949 58-69 (101)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=29.58 Aligned_cols=135 Identities=16% Similarity=0.100 Sum_probs=78.2
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEECCCC-----CHHHHCCCCC
Q ss_conf 89765633201110354311014775112899984432799884202999955840222000277-----2111000010
Q 000258 1149 EGKPENQNHAIIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEFNNYYGIRKPTILGVRENIFSGS-----VSSLASFMSA 1223 (1771)
Q Consensus 1149 eGKpeNQNhAiiFtRGE~lQtIDmNQDnYlEEalKmRnlL~Ef~~~~g~~~~~IlG~RE~IFt~~-----vssLa~f~a~ 1223 (1771)
.||+.|.|+++-.++||++-.+|..-- .-.++++ .+++.|++++ .+.+++.+-.+..++ .+...... .
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~~-~~pd~L~--~lv~~~~~dp---~v~~V~~~~~~~~~~~~~~~~~~~~~~~-~ 296 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADHV-PSRDFLA--RTVGYFVEDP---DLFLVQTPHFFINPDPIQRNLALGDRCP-P 296 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTEE-ECTTHHH--HHHHHHHHSS---SCCEEECCCCBSSCCHHHHHHTCCTTSC-C
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHH--HHHHHHHCCC---CEEEEECCEEEECCCHHHHHHHHHHHHH-H
T ss_conf 763689999999659999999999988-1858999--9999984099---8599965679767855765444776516-7
Q ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEE
Q ss_conf 034787766675216651000137985343224346886332211103412110122223578401244323
Q 000258 1224 QETSFVTLGQRVLANPLKVRMHYGHPDVFDRFWFLPRGGISKASKVINISEDIFAGFNCTLRGGNVTHHEYI 1295 (1771)
Q Consensus 1224 qE~sF~Tl~qR~la~Pl~vr~HYGHPDvfd~~f~~TrGGiSKAsk~inlsEDIfaG~N~tlRgG~VtH~EYi 1295 (1771)
....|-...++.... .....--|+-=++.|-....-||... -.++||..-++....+|.++.+..-.
T Consensus 297 ~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~----~~~~ED~~l~~rl~~~G~ri~~~~~~ 363 (802)
T 4hg6_A 297 ENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAG----ETITEDAETALEIHSRGWKSLYIDRA 363 (802)
T ss_dssp TTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCC----SSSSHHHHHHHHHHTTTCCEEECCCC
T ss_pred HHHHHHHHHHHHHHH-CCCCEECCCCHHHHHHHHHHCCCCCC----CCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 899998888754764-38845426640324999997088678----88030999999999769959993688
No 2
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=19.64 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCC
Q ss_conf 467766689973032223665665433234788
Q 000258 645 TRFALLWNEIMLTFREEDLISDRELELLELQPN 677 (1771)
Q Consensus 645 ~~Fa~iWNeII~S~reEdLIs~rE~~lL~~p~~ 677 (1771)
.+...+||+||..||....|-||...+=.|+..
T Consensus 8 ~~at~lw~~ii~~~~~g~~ikdrr~~lk~y~~C 40 (105)
T 2ysr_A 8 YRATKLWNEVTTSFRAGMPLRKHRQHFKKYGNC 40 (105)
T ss_dssp HHHHHHHHHHHHHHHHSCSCCCCCCSSSSCSSC
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEECCEECCCC
T ss_conf 117899999999997599753234688998860
No 3
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=18.66 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=3.8
Q ss_pred CCCCCCCCCCC
Q ss_conf 98864446865
Q 000258 248 PHSAWRNYDDI 258 (1771)
Q Consensus 248 dHs~wrNYDDi 258 (1771)
+-++|.+.-|.
T Consensus 108 ~~~~w~~~~d~ 118 (671)
T 2zpa_A 108 VWEEWENQPDA 118 (671)
T ss_dssp CGGGTTTSCBG
T ss_pred CHHHHHHCCCH
T ss_conf 75650105880
No 4
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=1.00 E-value=1 Score=17.41 Aligned_cols=55 Identities=22% Similarity=0.175 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 31033444677666899730322236656654332347888887411241366442588999898
Q 000258 638 ESSQVEATRFALLWNEIMLTFREEDLISDRELELLELQPNCWDIRVIRWPCILLCNELLLALSQA 702 (1771)
Q Consensus 638 ~~~~~~~~~Fa~iWNeII~S~reEdLIs~rE~~lL~~p~~~~~~~~i~wP~FLla~ki~~Ald~a 702 (1771)
.++|..+.+.|-+=++.+.+.+.- +++-|...+.+ .++||-|||..+=..|.|.-
T Consensus 141 NSsQdsAVaIA~~i~~~~~~~~~~--------~~~FyH~~d~~--~v~~PfylL~~eK~~Afe~F 195 (279)
T 3n4p_A 141 NTNQAAAVRIACLIRQSVQSSTLI--------RVLFYHTPDQN--HIEQPFYLMGRDKALAVEQF 195 (279)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHCCC--------EEEEECEEETT--TEEESCBCCSTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCC--------CEEEEECCCCC--CCCCCCHHHCCCHHHHHHHH
T ss_conf 741889999999999876424566--------37998417986--43087312064047999999
No 5
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=1.00 E-value=1 Score=15.51 Aligned_cols=17 Identities=6% Similarity=-0.041 Sum_probs=8.7
Q ss_pred EECCCCCHHHHCCCCCH
Q ss_conf 00027721110000100
Q 000258 1208 NIFSGSVSSLASFMSAQ 1224 (1771)
Q Consensus 1208 ~IFt~~vssLa~f~a~q 1224 (1771)
|-|+..--..+||...+
T Consensus 177 Y~F~~~~~~~~Df~~~n 193 (278)
T 2bsz_A 177 YRFDLQPQYEVDYSVTN 193 (278)
T ss_dssp EEECCCCBCHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHH
T ss_conf 99857766899999997
No 6
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=1.00 E-value=1 Score=15.51 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=7.9
Q ss_pred EECCCCCHHHHCCCCC
Q ss_conf 0002772111000010
Q 000258 1208 NIFSGSVSSLASFMSA 1223 (1771)
Q Consensus 1208 ~IFt~~vssLa~f~a~ 1223 (1771)
|-|+..--..+||...
T Consensus 177 Y~F~~~~~~~~Df~~~ 192 (280)
T 2vfb_A 177 YEFSTLTRPQVDLRVG 192 (280)
T ss_dssp EEECCSCCCHHHHHHH
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9995775788999997
No 7
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=1.00 E-value=1 Score=15.43 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=7.7
Q ss_pred EECCCCCHHHHCCCCC
Q ss_conf 0002772111000010
Q 000258 1208 NIFSGSVSSLASFMSA 1223 (1771)
Q Consensus 1208 ~IFt~~vssLa~f~a~ 1223 (1771)
|-|+..--...||...
T Consensus 180 Y~F~~~~~~~~D~~~~ 195 (278)
T 1w5r_A 180 YTFTTEPRPRIDLEVG 195 (278)
T ss_dssp EEECCCCCCHHHHHHH
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9995675788999998
No 8
>3fgr_B Putative phospholipase B-like 2 40 kDa form; alpha beta, glycosylated, disulphide bonds, N-terminal nucle hydrolase fold, two chain form; HET: NAG; 1.80A {Mus musculus} PDB: 3fgt_B*
Probab=1.00 E-value=1 Score=15.27 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 013798534322434
Q 000258 1244 MHYGHPDVFDRFWFL 1258 (1771)
Q Consensus 1244 ~HYGHPDvfd~~f~~ 1258 (1771)
.|+||||+||=-|..
T Consensus 328 ~H~G~Pd~~~F~~v~ 342 (357)
T 3fgr_B 328 LHMGQPDLWMFSPIR 342 (357)
T ss_dssp CCTTCCSEECCCCEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 969988672777789
No 9
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=15.06 Aligned_cols=28 Identities=11% Similarity=-0.018 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 1478999999999999999811786521
Q 000258 722 YTRCAVIEAYDSIKYLLLAVVKYGTEEN 749 (1771)
Q Consensus 722 y~~~Av~e~y~s~k~il~~l~~~~~~~~ 749 (1771)
|+.-+..||-+.++.++..-+.+.+..+
T Consensus 92 ~L~~~L~ec~~lL~~lv~~HLT~KS~~R 119 (161)
T 3f4m_A 92 VLAGLLTECRDVLLELVEHHLTPKSHGR 119 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999999999986588321778
No 10
>2lai_A Avirulence protein ATR13; nucleolar localization, signaling protein; NMR {Hyaloperonospora parasitica}
Probab=1.00 E-value=1 Score=14.67 Aligned_cols=12 Identities=42% Similarity=0.786 Sum_probs=0.0
Q ss_pred CHHHHHHHHCHH
Q ss_conf 199999862603
Q 000258 938 SILFYLQKIYAD 949 (1771)
Q Consensus 938 SiL~YLq~iyPd 949 (1771)
|+++||++|||+
T Consensus 58 sv~eylkk~ypg 69 (101)
T 2lai_A 58 SVMEYLKKTYPG 69 (101)
T ss_dssp CCCCCTTTSCCS
T ss_pred HHHHHHHHHCCC
T ss_conf 999999872799
Done!