Query 000258
Match_columns 1771
No_of_seqs 221 out of 375
Neff 4.4
Searched_HMMs 13730
Date Tue Mar 26 16:48:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000258.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_37-41//hhsearch_scop/000258hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 6.1 55 0.004 6.8 1.7 44 1136-1183 84-130 (328)
2 d2yrka1 g.37.1.4 (A:8-55) Zinc 3.8 69 0.005 6.1 -0.8 13 1199-1211 16-28 (48)
3 d1wixa_ a.40.3.1 (A:) Hook hom 3.2 1.2E+02 0.0087 4.4 1.2 51 935-1000 35-86 (164)
4 d1n8va_ a.118.21.1 (A:) Chemos 3.2 1.2E+02 0.0089 4.3 3.0 26 937-962 65-90 (101)
5 d1sq5a_ c.37.1.6 (A:) Pantothe 3.2 1.2E+02 0.0089 4.3 5.3 14 727-740 43-56 (308)
6 d1hzfa_ a.102.4.4 (A:) C4adg f 2.9 1.1E+02 0.0084 4.5 -0.4 16 346-361 19-34 (326)
7 d1qg8a_ c.68.1.1 (A:) Spore co 2.9 1.4E+02 0.01 3.9 0.4 108 1068-1195 2-117 (255)
8 d1dfma_ c.52.1.5 (A:) Restrict 2.9 1.4E+02 0.01 3.9 3.2 53 1151-1207 120-172 (223)
9 d1r9wa_ d.89.1.2 (A:) Replicat 2.7 1.4E+02 0.01 3.9 -0.1 22 1272-1297 41-62 (145)
10 d1x4la1 g.39.1.3 (A:8-36) Four 2.7 1.5E+02 0.011 3.6 0.5 8 1455-1462 11-18 (29)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.09 E-value=55 Score=6.80 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=30.1
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC---CCCHHHHHHH
Q ss_conf 57875389975688976563320111035431101477---5112899984
Q 000258 1136 IYRIRLPGPLKLGEGKPENQNHAIIFTRGDAVQTIDMN---QDNYFEEALK 1183 (1771)
Q Consensus 1136 iYrikLpG~pilGeGKpeNQNhAiiFtRGE~lQtIDmN---QDnYlEEalK 1183 (1771)
+.-|+.+. ..|.+...|.++--++||++-.+|.- ..+++|+.++
T Consensus 84 i~vi~~~~----n~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~ 130 (328)
T d1xhba2 84 VHVIRMEQ----RSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLA 130 (328)
T ss_dssp EEEEECSS----CCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHH
T ss_pred EEEEEECC----CCCCHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 09997324----432168878999863110022017655667369999999
No 2
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.85 E-value=69 Score=6.10 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=6.7
Q ss_pred CCEEECCCCEECC
Q ss_conf 9558402220002
Q 000258 1199 KPTILGVRENIFS 1211 (1771)
Q Consensus 1199 ~~~IlG~RE~IFt 1211 (1771)
..+=+-+|+||||
T Consensus 16 Ys~~~SvrdHiFs 28 (48)
T d2yrka1 16 YSARLSIRDHIFS 28 (48)
T ss_dssp CCSSSCHHHHHTS
T ss_pred EEEECCHHHHHHH
T ss_conf 3010216766522
No 3
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.25 E-value=1.2e+02 Score=4.36 Aligned_cols=51 Identities=20% Similarity=0.498 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCHHH
Q ss_conf 963199999862603554-499983205999972688665543321133034420000000002899
Q 000258 935 DGVSILFYLQKIYADEWN-NFMERMRREGMEDDDDIWSKKARDLRLWASYRGQTLSRTVRGMMYYYR 1000 (1771)
Q Consensus 935 dgiSiL~YLq~iyPdEW~-NFlER~~~~~~~~~~~~~~~~~~elRlWASyRGQTLaRTVrGmMyY~~ 1000 (1771)
||+-+-+-|.+|-|+-.. ..++|++-. -...|+. |-|.|-+=+|+|+.|.+
T Consensus 35 DGv~l~~iL~qIdP~~f~~~~~~~~~~d--------------~~~nw~l-r~~NLk~i~~~i~~Yy~ 86 (164)
T d1wixa_ 35 NGVTMAQVLHQIDVAWFSESWLSRIKDD--------------VGDNWRI-KASNLKKVLHGITSYYH 86 (164)
T ss_dssp TSHHHHHHHHHHCTTTSCHHHHTTCCSG--------------GGGCSHH-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCHHHHCCCCC--------------CCCCHHH-HHHHHHHHHHHHHHHHH
T ss_conf 3699999999849653571565236666--------------5533999-99789999999999999
No 4
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]}
Probab=3.21 E-value=1.2e+02 Score=4.31 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCHHHHHHHHHHHHHCC
Q ss_conf 31999998626035544999832059
Q 000258 937 VSILFYLQKIYADEWNNFMERMRREG 962 (1771)
Q Consensus 937 iSiL~YLq~iyPdEW~NFlER~~~~~ 962 (1771)
..++.||++=+|+||+-++..-+..+
T Consensus 65 ~kvi~~l~~~~p~~w~~l~~KYDP~g 90 (101)
T d1n8va_ 65 YRVIEHLIKNEIEIWRELTAKYDPTG 90 (101)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 99999999909099999999879695
No 5
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=3.20 E-value=1.2e+02 Score=4.31 Aligned_cols=14 Identities=36% Similarity=0.320 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q 000258 727 VIEAYDSIKYLLLA 740 (1771)
Q Consensus 727 v~e~y~s~k~il~~ 740 (1771)
|.|.|-.+.++|..
T Consensus 43 v~~iylpl~~l~~~ 56 (308)
T d1sq5a_ 43 VAEIYLPLSRLLNF 56 (308)
T ss_dssp HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 6
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.90 E-value=1.1e+02 Score=4.49 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9989999999999999
Q 000258 346 ELLTVFITWGGLRFLQ 361 (1771)
Q Consensus 346 ~~~SifiT~ail~~lq 361 (1771)
.++..++...++.++.
T Consensus 19 t~s~~~p~~~~~~yl~ 34 (326)
T d1hzfa_ 19 TMIYLAPTLAASRYLD 34 (326)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 7
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=2.88 E-value=1.4e+02 Score=3.91 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHH-HHHHCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCC
Q ss_conf 642999754325458688710899999-9880967379996200369996038888770321122210057875389975
Q 000258 1068 KFTYVVTCQVYGQQKAKGDSRAEEILY-LLKNNEALRVAYVDEVHLGRDEVEYYSVLVKYDQQIQREVEIYRIRLPGPLK 1146 (1771)
Q Consensus 1068 KFtyVVscQ~Yg~qk~~~d~~a~di~~-Lm~~~p~LrVAYide~~~~~g~~~yySvLvk~~~~~~~~~eiYrikLpG~pi 1146 (1771)
|.+-|+.| .-..+-=.+-++. +-++||+..|-.+|.-.+.+. .+-+.+..+-+|||+..+++
T Consensus 2 ~vSiiip~------yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t-----------~~~l~~~~~~~~i~~~~~~~ 64 (255)
T d1qg8a_ 2 KVSVIMTS------YNKSDYVAKSISSILSQTFSDFELFIMDDNSNEET-----------LNVIRPFLNDNRVRFYQSDI 64 (255)
T ss_dssp CEEEEEEE------SSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHH-----------HHHHGGGGGSTTEEEEECCC
T ss_pred EEEEEEEC------CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCH-----------HHHHHHHHHHCCCCCCCCCC
T ss_conf 79999962------79889999999999828899859999989897318-----------99999964301222111123
Q ss_pred C-------CCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 6-------889765633201110354311014775112899984432799884202
Q 000258 1147 L-------GEGKPENQNHAIIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEFNNYY 1195 (1771)
Q Consensus 1147 l-------GeGKpeNQNhAiiFtRGE~lQtIDmNQDnYlEEalKmRnlL~Ef~~~~ 1195 (1771)
. +.|.+.+=|.||-.++||++-.+| .-|-+.++++. .+.+.++.+.
T Consensus 65 ~~~~~~~~~~g~~~a~N~gi~~a~g~~i~~lD-~Dd~~~p~~l~--~~~~~~~~~~ 117 (255)
T d1qg8a_ 65 SGVKERTEKTRYAALINQAIEMAEGEYITYAT-DDNIYMPDRLL--KMVRELDTHP 117 (255)
T ss_dssp CSHHHHHSSCHHHHHHHHHHHHCCCSEEEEEE-TTEEECTTHHH--HHHHHHHHCT
T ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHH--HHHHHHHHCC
T ss_conf 45432232100001222222345666343336-65320025588--9999998498
No 8
>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
Probab=2.87 E-value=1.4e+02 Score=3.88 Aligned_cols=53 Identities=30% Similarity=0.375 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 765633201110354311014775112899984432799884202999955840222
Q 000258 1151 KPENQNHAIIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEFNNYYGIRKPTILGVRE 1207 (1771)
Q Consensus 1151 KpeNQNhAiiFtRGE~lQtIDmNQDnYlEEalKmRnlL~Ef~~~~g~~~~~IlG~RE 1207 (1771)
+.++-+.+||-|.| .+-+--|-|+|+|.+.--=+-|.+..-.+- |+.|||.-|
T Consensus 120 ~~~~t~~~Ii~tk~--~~~~asn~~~y~e~~~~~L~~l~~~~v~dv--Pi~~~gi~e 172 (223)
T d1dfma_ 120 DEEGMKVAIIITKG--HMFPASNSSLYYEQAQNQLNSLAEYNVFDV--PIRLVGLIE 172 (223)
T ss_dssp SSSBCCEEEEEEEC--TTSCCSTTBCCHHHHHHHHHHHHHTTCCCS--CEEEEEEEC
T ss_pred CCCCCCEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--CEEEEEECC
T ss_conf 02466569999624--342034614799999999986273632345--555566057
No 9
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=2.73 E-value=1.4e+02 Score=3.87 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=0.0
Q ss_pred CCHHHCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 41211012222357840124432330
Q 000258 1272 ISEDIFAGFNCTLRGGNVTHHEYIQV 1297 (1771)
Q Consensus 1272 lsEDIfaG~N~tlRgG~VtH~EYiQ~ 1297 (1771)
++||++.+....|+ .||+|+|+
T Consensus 41 v~~~l~ea~k~lLq----~hc~y~~~ 62 (145)
T d1r9wa_ 41 VNPTIAEGFKTLIQ----PFILYAHI 62 (145)
T ss_dssp ECHHHHHTHHHHHG----GGEEEEEE
T ss_pred ECHHHHHHHHHHHH----HHEEEEEE
T ss_conf 08899999999977----44127888
No 10
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.68 E-value=1.5e+02 Score=3.63 Aligned_cols=8 Identities=50% Similarity=0.899 Sum_probs=0.0
Q ss_pred CCCCEEEE
Q ss_conf 03813432
Q 000258 1455 HGGAKYRA 1462 (1771)
Q Consensus 1455 ~GGAkYra 1462 (1771)
+||+||++
T Consensus 11 ~gg~kyis 18 (29)
T d1x4la1 11 LGGTKYIS 18 (29)
T ss_dssp SSSCSCEE
T ss_pred CCCCEEEE
T ss_conf 57725887
Done!