Query 000259
Match_columns 1771
No_of_seqs 226 out of 370
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 17:20:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000259.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_37-41//hhsearch_pdb/000259hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 32.4 2.9 135 1144-1290 224-363 (802)
2 2ysr_A DEP domain-containing p 1.0 1 1 19.9 -0.3 33 640-672 8-40 (105)
3 2zpa_A Uncharacterized protein 1.0 1 1 19.1 -2.3 12 1095-1106 307-318 (671)
4 3n4p_A Terminase subunit UL89 1.0 1 1 17.4 1.4 55 634-698 142-196 (279)
5 3f4m_A Tumor necrosis factor, 1.0 1 1 17.4 -5.6 34 717-752 92-125 (161)
6 2vfb_A Arylamine N-acetyltrans 1.0 1 1 15.6 -1.3 16 1203-1218 177-192 (280)
7 2bsz_A Arylamine N-acetyltrans 1.0 1 1 15.6 -1.8 16 1203-1218 177-192 (278)
8 3fgr_B Putative phospholipase 1.0 1 1 15.2 0.7 15 1239-1253 328-342 (357)
9 2lai_A Avirulence protein ATR1 1.0 1 1 14.9 -3.0 15 931-945 56-70 (101)
10 2z86_A Chondroitin synthase; G 1.0 1 1 14.8 0.9 148 1133-1287 149-322 (625)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=32.36 Aligned_cols=135 Identities=15% Similarity=0.104 Sum_probs=80.7
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEECCC-----CCCCCCCCCC
Q ss_conf 89765733201110354321114775122899984534899997520989945850221010267-----2000121110
Q 000259 1144 EGKPENQNHAFIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEYRHYYGIRKPTILGVREHIFTGS-----VSSLAGFMSA 1218 (1771)
Q Consensus 1144 EGKpeNQNHAiIFtRGE~lQtIDmNQDnYlEEalKmRnlL~Ef~~~~g~~~~~IlG~RE~IFt~~-----vssLa~f~a~ 1218 (1771)
.||+.|.|+++-.++||++-.+|..-- .-.++++ .+++.+++++ .+.+++.+-.+..++ .+...... .
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~~-~~pd~L~--~lv~~~~~dp---~v~~V~~~~~~~~~~~~~~~~~~~~~~~-~ 296 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADHV-PSRDFLA--RTVGYFVEDP---DLFLVQTPHFFINPDPIQRNLALGDRCP-P 296 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTEE-ECTTHHH--HHHHHHHHSS---SCCEEECCCCBSSCCHHHHHHTCCTTSC-C
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHH--HHHHHHHCCC---CEEEEECCEEEECCCHHHHHHHHHHHHH-H
T ss_conf 763689999999659999999999988-1858999--9999984099---8599965679767855765444776516-7
Q ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEE
Q ss_conf 034777766674115551001137984332101013687422211103412110122223578401256435
Q 000259 1219 QETSFVTLGQRVLANPLKIRMHYGHPDVFDRFWFLTRGGLSKASRVINISEDIFAGFNCTLRGGNVTHHEYI 1290 (1771)
Q Consensus 1219 qE~sF~Tl~qR~la~Pl~vr~HYGHPDvfd~~f~~TrGGvSKAsk~i~lsEDIfaG~N~tlRgG~Vth~EYi 1290 (1771)
....|-...++.... .....--|+-=++.|-....-||.... .++||..-++....+|.++.++.-.
T Consensus 297 ~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~~----~~~ED~~l~~rl~~~G~ri~~~~~~ 363 (802)
T 4hg6_A 297 ENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAGE----TITEDAETALEIHSRGWKSLYIDRA 363 (802)
T ss_dssp TTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCCS----SSSHHHHHHHHHHTTTCCEEECCCC
T ss_pred HHHHHHHHHHHHHHH-CCCCEECCCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 899998888754764-388454266403249999970886788----8030999999999769959993688
No 2
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=19.87 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCC
Q ss_conf 356676799983022234657131312045789
Q 000259 640 NRFALIWNEIIATFREEDIISDKEVELLELPQN 672 (1771)
Q Consensus 640 ~~Fa~iWNeII~SmreEdLIsdrE~~lL~~p~~ 672 (1771)
.+...+||+||..||....|-||...+=.++..
T Consensus 8 ~~at~lw~~ii~~~~~g~~ikdrr~~lk~y~~C 40 (105)
T 2ysr_A 8 YRATKLWNEVTTSFRAGMPLRKHRQHFKKYGNC 40 (105)
T ss_dssp HHHHHHHHHHHHHHHHSCSCCCCCCSSSSCSSC
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEECCEECCCC
T ss_conf 117899999999997599753234688998860
No 3
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=19.12 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=5.3
Q ss_pred CCCEEEEEECCC
Q ss_conf 344466530013
Q 000259 1095 EALRVAYVDEVS 1106 (1771)
Q Consensus 1095 p~LrVAYide~~ 1106 (1771)
|.++...++|.-
T Consensus 307 ~~~~~~~L~~pi 318 (671)
T 2zpa_A 307 PHLHRFELQQPI 318 (671)
T ss_dssp TTCEEEECCSCS
T ss_pred CCCCEEECCCCE
T ss_conf 977679815766
No 4
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=1.00 E-value=1 Score=17.45 Aligned_cols=55 Identities=24% Similarity=0.221 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHH
Q ss_conf 01432335667679998302223465713131204578998753234523563203899999998
Q 000259 634 SNQVEANRFALIWNEIIATFREEDIISDKEVELLELPQNTWNVRVIRWPCFLLCNELLLALSQAK 698 (1771)
Q Consensus 634 ~~~~~~~~Fa~iWNeII~SmreEdLIsdrE~~lL~~p~~~~~~~~i~wP~FLla~ki~~Ald~a~ 698 (1771)
++|..++++|-.=++.+.+.+.- +++-++..+++ .|+||-|||..+=..|.|.-.
T Consensus 142 SsQdsAVaIA~~i~~~~~~~~~~--------~~~FyH~~d~~--~v~~PfylL~~eK~~Afe~FI 196 (279)
T 3n4p_A 142 TNQAAAVRIACLIRQSVQSSTLI--------RVLFYHTPDQN--HIEQPFYLMGRDKALAVEQFI 196 (279)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCC--------EEEEECEEETT--TEEESCBCCSTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCC--------CEEEEECCCCC--CCCCCCHHHCCCHHHHHHHHH
T ss_conf 41889999999999876424566--------37998417986--430873120640479999999
No 5
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=17.44 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 357889999999999998770268753168999899
Q 000259 717 YRRCAVIEAYDSIKHLILHIIKVNTEEHSIITVLFQ 752 (1771)
Q Consensus 717 y~~~Av~e~y~s~k~iL~~l~~~~~~~~~ii~~i~~ 752 (1771)
|+.-+..||-+.+..++..-+.+.+.++ |+.+|.
T Consensus 92 ~L~~~L~ec~~lL~~lv~~HLT~KS~~R--i~~vF~ 125 (161)
T 3f4m_A 92 VLAGLLTECRDVLLELVEHHLTPKSHGR--IRHVFD 125 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHH--HHHHHH
T ss_conf 9999999999999999986588321778--999999
No 6
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=1.00 E-value=1 Score=15.60 Aligned_cols=16 Identities=6% Similarity=-0.018 Sum_probs=7.5
Q ss_pred EEECCCCCCCCCCCCC
Q ss_conf 0102672000121110
Q 000259 1203 HIFTGSVSSLAGFMSA 1218 (1771)
Q Consensus 1203 ~IFt~~vssLa~f~a~ 1218 (1771)
|-|+..--..+||...
T Consensus 177 Y~F~~~~~~~~Df~~~ 192 (280)
T 2vfb_A 177 YEFSTLTRPQVDLRVG 192 (280)
T ss_dssp EEECCSCCCHHHHHHH
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9995775788999997
No 7
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=1.00 E-value=1 Score=15.57 Aligned_cols=16 Identities=6% Similarity=-0.093 Sum_probs=8.2
Q ss_pred EEECCCCCCCCCCCCC
Q ss_conf 0102672000121110
Q 000259 1203 HIFTGSVSSLAGFMSA 1218 (1771)
Q Consensus 1203 ~IFt~~vssLa~f~a~ 1218 (1771)
|-|+..--..+||...
T Consensus 177 Y~F~~~~~~~~Df~~~ 192 (278)
T 2bsz_A 177 YRFDLQPQYEVDYSVT 192 (278)
T ss_dssp EEECCCCBCHHHHHHH
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9985776689999999
No 8
>3fgr_B Putative phospholipase B-like 2 40 kDa form; alpha beta, glycosylated, disulphide bonds, N-terminal nucle hydrolase fold, two chain form; HET: NAG; 1.80A {Mus musculus} PDB: 3fgt_B*
Probab=1.00 E-value=1 Score=15.17 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 113798433210101
Q 000259 1239 MHYGHPDVFDRFWFL 1253 (1771)
Q Consensus 1239 ~HYGHPDvfd~~f~~ 1253 (1771)
.|+||||+||=-|..
T Consensus 328 ~H~G~Pd~~~F~~v~ 342 (357)
T 3fgr_B 328 LHMGQPDLWMFSPIR 342 (357)
T ss_dssp CCTTCCSEECCCCEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 969988672777789
No 9
>2lai_A Avirulence protein ATR13; nucleolar localization, signaling protein; NMR {Hyaloperonospora parasitica}
Probab=1.00 E-value=1 Score=14.88 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHCHHH
Q ss_conf 511999998627157
Q 000259 931 GVSILYYLQTIYADE 945 (1771)
Q Consensus 931 gVSiL~YLq~iyPdE 945 (1771)
--|+++||++|||+-
T Consensus 56 yasv~eylkk~ypgp 70 (101)
T 2lai_A 56 YASVMEYLKKTYPGP 70 (101)
T ss_dssp SCCCCCCTTTSCCSH
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999998727994
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=14.85 Aligned_cols=148 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEECCCCCCC
Q ss_conf 87648996568897657332011103543211147751228999845348999975209899458502210102672000
Q 000259 1133 RVKLPGPLKLGEGKPENQNHAFIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEYRHYYGIRKPTILGVREHIFTGSVSSL 1212 (1771)
Q Consensus 1133 RIkLpG~pilGEGKpeNQNHAiIFtRGE~lQtIDmNQDnYlEEalKmRnlL~Ef~~~~g~~~~~IlG~RE~IFt~~vssL 1212 (1771)
+|++--++..|-||+.+-|+|+-.++||++-.+|..--- -.++|. .+++.++++ ....++|.+.++-.+.....
T Consensus 149 ~i~~i~~~~~~~g~~~a~N~g~~~a~g~~v~~lD~D~~~-~~~~l~--~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~ 222 (625)
T 2z86_A 149 NIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAP-NPLWVQ--SYMELLAVD---DNVALIGPRKYIDTSKHTYL 222 (625)
T ss_dssp CEEEEEECCCSCCHHHHHHHHHHHCCSSEEEEECTTEEE-CTTHHH--HHHHHHHHC---TTEEEECCEEEECCTTCCHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHH--HHHHHHHCC---CCEEEEEEEEECCCCCCCHH
T ss_conf 829998678774306899999986884789997898777-979999--999998559---86399985565167422122
Q ss_pred CCCCCCHHHHH--------------------------HHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12111003477--------------------------7766674115551001137984332101013687422211103
Q 000259 1213 AGFMSAQETSF--------------------------VTLGQRVLANPLKIRMHYGHPDVFDRFWFLTRGGLSKASRVIN 1266 (1771)
Q Consensus 1213 a~f~a~qE~sF--------------------------~Tl~qR~la~Pl~vr~HYGHPDvfd~~f~~TrGGvSKAsk~i~ 1266 (1771)
.......-... ..........+.......|.-=++.|-....-||....-..--
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~g 302 (625)
T 2z86_A 223 DFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWG 302 (625)
T ss_dssp HHHHSTTGGGTSCC---------------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHHHCCCCTTCSSCC
T ss_pred HCCCCHHHHHHCCHHCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEECEEEEEHHHHHHHCCCCCCCCCCC
T ss_conf 20464677663401205773113332477645003432034310136775258850225557899997078863034278
Q ss_pred CCHHHCCCCCCCCCCCCEEEE
Q ss_conf 412110122223578401256
Q 000259 1267 ISEDIFAGFNCTLRGGNVTHH 1287 (1771)
Q Consensus 1267 lsEDIfaG~N~tlRgG~Vth~ 1287 (1771)
.||.--++-....|+++.+.
T Consensus 303 -~ED~dl~~Rl~~~G~~i~~~ 322 (625)
T 2z86_A 303 -GEDNEFGYRLYREGCYFRSV 322 (625)
T ss_dssp -CHHHHHHHHHHHTTCEEEEC
T ss_pred -CCHHHHHHHHHHCCCEEEEC
T ss_conf -42325654187579639974
Done!