Query 000259
Match_columns 1771
No_of_seqs 226 out of 370
Neff 4.4
Searched_HMMs 13730
Date Tue Mar 26 17:31:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000259.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_37-41//hhsearch_scop/000259hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 6.9 47 0.0034 7.5 2.1 43 1131-1177 84-129 (328)
2 d2yrka1 g.37.1.4 (A:8-55) Zinc 4.7 48 0.0035 7.4 -1.0 11 1196-1206 18-28 (48)
3 d1hzfa_ a.102.4.4 (A:) C4adg f 3.1 1.1E+02 0.0081 4.8 -0.3 19 338-356 16-34 (326)
4 d1n8va_ a.118.21.1 (A:) Chemos 3.0 1.3E+02 0.0095 4.3 3.3 26 932-957 65-90 (101)
5 d1dfma_ c.52.1.5 (A:) Restrict 3.0 1.3E+02 0.0098 4.2 2.9 53 1146-1202 120-172 (223)
6 d1w4ta1 d.3.1.5 (A:1-277) Aryl 2.8 1.4E+02 0.01 4.0 0.2 88 1239-1326 47-157 (277)
7 d1r9wa_ d.89.1.2 (A:) Replicat 2.8 1.4E+02 0.01 4.1 -0.1 22 1267-1292 41-62 (145)
8 d1x3aa1 a.240.1.1 (A:8-94) Syn 2.7 95 0.0069 5.3 -1.0 53 1046-1098 1-53 (87)
9 d1wixa_ a.40.3.1 (A:) Hook hom 2.6 1.5E+02 0.011 3.8 0.6 68 903-995 18-86 (164)
10 d1wlna1 b.26.1.2 (A:8-114) Afa 2.5 1.6E+02 0.012 3.6 2.4 57 1114-1171 6-73 (107)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.91 E-value=47 Score=7.49 Aligned_cols=43 Identities=14% Similarity=0.301 Sum_probs=29.2
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC---CCCHHHHHH
Q ss_conf 57876489965688976573320111035432111477---512289998
Q 000259 1131 IYRVKLPGPLKLGEGKPENQNHAFIFTRGDAVQTIDMN---QDNYFEEAL 1177 (1771)
Q Consensus 1131 iYRIkLpG~pilGEGKpeNQNHAiIFtRGE~lQtIDmN---QDnYlEEal 1177 (1771)
+.-|+.+. ..|.+...|.++--++||++-.+|.- ..++||+.+
T Consensus 84 i~vi~~~~----n~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 84 VHVIRMEQ----RSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp EEEEECSS----CCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred EEEEEECC----CCCCHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHH
T ss_conf 09997324----43216887899986311002201765566736999999
No 2
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.68 E-value=48 Score=7.41 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=5.2
Q ss_pred EEECCCCEEEC
Q ss_conf 58502210102
Q 000259 1196 TILGVREHIFT 1206 (1771)
Q Consensus 1196 ~IlG~RE~IFt 1206 (1771)
+-+-+|+||||
T Consensus 18 ~~~SvrdHiFs 28 (48)
T d2yrka1 18 ARLSIRDHIFS 28 (48)
T ss_dssp SSSCHHHHHTS
T ss_pred EECCHHHHHHH
T ss_conf 10216766522
No 3
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.06 E-value=1.1e+02 Score=4.78 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 6989989999999999999
Q 000259 338 VQVRALTVVLTWSVLRFLQ 356 (1771)
Q Consensus 338 ~~~~~~si~it~a~l~~lq 356 (1771)
.-..++..++...++.++.
T Consensus 16 ~EQt~s~~~p~~~~~~yl~ 34 (326)
T d1hzfa_ 16 GEQTMIYLAPTLAASRYLD 34 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 4
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]}
Probab=3.04 E-value=1.3e+02 Score=4.31 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf 11999998627157655998710378
Q 000259 932 VSILYYLQTIYADEWKNFLERMHREG 957 (1771)
Q Consensus 932 VSiL~YLq~iyPdEW~NFlER~~~~~ 957 (1771)
..++.||++=+|+||+-++..-+..+
T Consensus 65 ~kvi~~l~~~~p~~w~~l~~KYDP~g 90 (101)
T d1n8va_ 65 YRVIEHLIKNEIEIWRELTAKYDPTG 90 (101)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 99999999909099999999879695
No 5
>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
Probab=2.95 E-value=1.3e+02 Score=4.20 Aligned_cols=53 Identities=28% Similarity=0.354 Sum_probs=26.5
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 765733201110354321114775122899984534899997520989945850221
Q 000259 1146 KPENQNHAFIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEYRHYYGIRKPTILGVRE 1202 (1771)
Q Consensus 1146 KpeNQNHAiIFtRGE~lQtIDmNQDnYlEEalKmRnlL~Ef~~~~g~~~~~IlG~RE 1202 (1771)
+.++-|-+||-|.| .+-+--|-|+|+|.+.--=+-|.+..-. .-|++|||.-|
T Consensus 120 ~~~~t~~~Ii~tk~--~~~~asn~~~y~e~~~~~L~~l~~~~v~--dvPi~~~gi~e 172 (223)
T d1dfma_ 120 DEEGMKVAIIITKG--HMFPASNSSLYYEQAQNQLNSLAEYNVF--DVPIRLVGLIE 172 (223)
T ss_dssp SSSBCCEEEEEEEC--TTSCCSTTBCCHHHHHHHHHHHHHTTCC--CSCEEEEEEEC
T ss_pred CCCCCCEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCCC--CCCEEEEEECC
T ss_conf 02466569999624--3420346147999999999862736323--45555566057
No 6
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.82 E-value=1.4e+02 Score=4.03 Aligned_cols=88 Identities=20% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCE-------------EEEEE-EEECCCC--
Q ss_conf 113798------4332101013687422211103412110122223578401-------------25643-5414654--
Q 000259 1239 MHYGHP------DVFDRFWFLTRGGLSKASRVINISEDIFAGFNCTLRGGNV-------------THHEY-IQVGKGR-- 1296 (1771)
Q Consensus 1239 ~HYGHP------Dvfd~~f~~TrGGvSKAsk~i~lsEDIfaG~N~tlRgG~V-------------th~EY-iQ~GKGR-- 1296 (1771)
.|+|+| ++|+|+-.--|||..=-.-++=-.==-=-||++++-+|+| +|.-- ++++.++
T Consensus 47 ~~~g~~i~ld~~~l~~kiV~~~rGGyC~E~N~Lf~~lL~~LGf~v~~~~arV~~~~~~~~~~~~~~H~~l~V~i~~~~yl 126 (277)
T d1w4ta1 47 VLLDRPIEIDADKVFAKVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAEGEFL 126 (277)
T ss_dssp HHTTCCCCCSHHHHHHHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETTEEEE
T ss_pred HHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEE
T ss_conf 32399877999999999986577723451569999999986980699889997368888888887418999998990699
Q ss_pred -CCCCCCCCCCEEECCCCCCCCCCHHHHHHC
Q ss_conf -446632222200003777531101446720
Q 000259 1297 -DVGLNQISMFEAKVASGNGEQVLSRDVYRL 1326 (1771)
Q Consensus 1297 -DvGlnqI~~FeaKia~GngEQ~lSRd~yrL 1326 (1771)
||||+.-...+.=--.+..+|.--.+.||+
T Consensus 127 vDvGfG~~~~~~Pl~l~~~~~~~~~~~~~r~ 157 (277)
T d1w4ta1 127 VDVGFGSANPPRALPLPGDEADAGQVHCVRL 157 (277)
T ss_dssp ECSCSGGGCCSSCEESSCCTTCTTCSEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 8403677685646237887531367517999
No 7
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=2.81 E-value=1.4e+02 Score=4.13 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=0.0
Q ss_pred CCHHHCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 41211012222357840125643541
Q 000259 1267 ISEDIFAGFNCTLRGGNVTHHEYIQV 1292 (1771)
Q Consensus 1267 lsEDIfaG~N~tlRgG~Vth~EYiQ~ 1292 (1771)
++||++.+....|+ .||+|+|+
T Consensus 41 v~~~l~ea~k~lLq----~hc~y~~~ 62 (145)
T d1r9wa_ 41 VNPTIAEGFKTLIQ----PFILYAHI 62 (145)
T ss_dssp ECHHHHHTHHHHHG----GGEEEEEE
T ss_pred ECHHHHHHHHHHHH----HHEEEEEE
T ss_conf 08899999999977----44127888
No 8
>d1x3aa1 a.240.1.1 (A:8-94) Synapse associated protein 1, SYAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.72 E-value=95 Score=5.29 Aligned_cols=53 Identities=11% Similarity=-0.017 Sum_probs=0.0
Q ss_pred CCCHHCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 86301025789745106532999766326579999944489999988183444
Q 000259 1046 SSVSMLFKGHEYGTALMKFTYVVACQIYGQQKDKKDPHAEEILYLMKNNEALR 1098 (1771)
Q Consensus 1046 ~~~~~~~~~~~~~~A~~KFtyVVscQ~Yg~~k~~~~~~a~di~~Lm~~~p~Lr 1098 (1771)
+.+..++.+|+.++..-+=||+-.+...-.+...-|.+...|..|+..+|+|+
T Consensus 1 ~~~e~~~keqi~aLs~D~~tfl~~P~~~~~f~F~~d~~~~~i~~lL~~~~~L~ 53 (87)
T d1x3aa1 1 TNDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLS 53 (87)
T ss_dssp SCTTHHHHHHHHHHHTCSHHHHCCCCSSSCCCCCHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHCHHHH
T ss_conf 97189999999998279877623999645666017864999999985798999
No 9
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.65 E-value=1.5e+02 Score=3.80 Aligned_cols=68 Identities=24% Similarity=0.460 Sum_probs=0.0
Q ss_pred CCCEEEECCCCCCEECCCHHHHHCCCCCCCCHHHHHHHHCHHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 555122134345201135333300068951199999862715765-5998710378887246687744312001001343
Q 000259 903 MMSFSVLTPYYNEEVVYSKEQLRTENEDGVSILYYLQTIYADEWK-NFLERMHREGMVNDKEIWTEKLKDLRLWASYRGQ 981 (1771)
Q Consensus 903 M~SFSVLTPyYsE~VlySl~eL~~enedgVSiL~YLq~iyPdEW~-NFlER~~~~~~~~~~~~~~~~~~elRlWASyRGQ 981 (1771)
+-||.+-.| +-+.+||. ||+-+-+-|.+|-|+-.. ..++|+ +.+-...|+. |-|
T Consensus 18 ~~tf~~~~~------~~~~~dL~----DGv~l~~iL~qIdP~~f~~~~~~~~--------------~~d~~~nw~l-r~~ 72 (164)
T d1wixa_ 18 LQTFKTASP------CQDVKQLT----NGVTMAQVLHQIDVAWFSESWLSRI--------------KDDVGDNWRI-KAS 72 (164)
T ss_dssp HTTCCCSSC------CCSHHHHT----TSHHHHHHHHHHCTTTSCHHHHTTC--------------CSGGGGCSHH-HHH
T ss_pred HHHCCCCCC------CCCHHHHH----CHHHHHHHHHHHCCCCCCCHHHHCC--------------CCCCCCCHHH-HHH
T ss_conf 998589766------68899970----3699999999849653571565236--------------6665533999-997
Q ss_pred CCCCCCCCCCCHHH
Q ss_conf 20112110003799
Q 000259 982 TLSRTVRGMMYYYR 995 (1771)
Q Consensus 982 TLaRTVrGmMyY~~ 995 (1771)
.|-+=+|+|+.|.+
T Consensus 73 NLk~i~~~i~~Yy~ 86 (164)
T d1wixa_ 73 NLKKVLHGITSYYH 86 (164)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999999
No 10
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.55 E-value=1.6e+02 Score=3.65 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCCCHHEEEEEECCCCCCCCCCCCCC-----------CCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 887866134333220005787648996568897657-----------3320111035432111477512
Q 000259 1114 YFSVLVKYDKQLEKEVEIYRVKLPGPLKLGEGKPEN-----------QNHAFIFTRGDAVQTIDMNQDN 1171 (1771)
Q Consensus 1114 yySvLvk~~~~~~~~~eiYRIkLpG~pilGEGKpeN-----------QNHAiIFtRGE~lQtIDmNQDn 1171 (1771)
|.-.|-......+....+|+++ +|...+|-|+++. ..||.|-..++.+...|.+..|
T Consensus 6 ~Ll~l~~dg~~~~~~~~~~~l~-~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 6 YLVELSPDGSDSRDKPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp EEEEECSSSCCCSSCCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred EEEEECCCCCCCCCCCEEEEEC-CCCEEECCCCCCCCCEEECCCCEEEEEEEEEECCCCCEEECCCCCC
T ss_conf 8999889866688864899979-9987999987899849989965332199999724631995278886
Done!