Query 000260
Match_columns 1770
No_of_seqs 274 out of 429
Neff 4.6
Searched_HMMs 13730
Date Tue Mar 26 18:12:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000260.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_37-41//hhsearch_scop/000260hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j98a_ d.185.1.2 (A:) Autoind 5.7 25 0.0018 9.1 -1.9 100 282-401 31-131 (154)
2 d2gl5a1 c.1.11.2 (A:123-400) P 5.6 61 0.0044 6.2 0.4 23 1299-1321 174-196 (278)
3 d1xhba2 c.68.1.17 (A:95-422) P 4.5 80 0.0058 5.3 1.7 26 1402-1427 224-249 (328)
4 d1vjea_ d.185.1.2 (A:) Autoind 3.5 1.1E+02 0.008 4.3 2.1 91 283-399 31-124 (149)
5 d2yrka1 g.37.1.4 (A:8-55) Zinc 3.0 82 0.0059 5.3 -1.1 10 1331-1340 19-28 (48)
6 d1wlna1 b.26.1.2 (A:8-114) Afa 3.0 1.3E+02 0.0098 3.6 2.9 22 1284-1305 52-73 (107)
7 d1j6xa_ d.185.1.2 (A:) Autoind 2.8 47 0.0034 7.0 -2.5 57 281-351 34-91 (151)
8 d1x4la1 g.39.1.3 (A:8-36) Four 2.7 1.5E+02 0.011 3.2 0.5 8 1587-1594 11-18 (29)
9 d2p62a1 e.67.1.1 (A:1-241) Hyp 2.5 1.6E+02 0.012 3.0 2.6 110 1269-1383 32-149 (241)
10 d1hfes_ a.137.4.1 (S:) Fe-only 2.5 1.6E+02 0.012 3.0 2.7 40 88-127 1-40 (88)
No 1
>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Bacillus subtilis [TaxId: 1423]}
Probab=5.73 E-value=25 Score=9.08 Aligned_cols=100 Identities=10% Similarity=0.069 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 000102799999-9994029999999999985499997661587654311124724589999999986602335434524
Q 000260 282 ANEQSRLGIPDE-NEPKLDEAAVQRVFMKSLDNYIKWCDYLCIQPVWSSLEAVGKEKKILFVSLYLLIWGEAANIRFLPE 360 (1770)
Q Consensus 282 aNr~sR~~~~~~-~~~~Ld~~AL~~Lh~k~f~NYkkWC~fL~~k~~w~~~~~~s~~~~ll~iALYLLIWGEAaNLRFMPE 360 (1770)
.+-..|+..|+. ..+...-++|..|.|.++.|+..|....+.- -|.||.+.+ +.||++||+ .-||
T Consensus 31 t~fDlR~~qPN~e~m~~~~lHTlEHL~At~lRn~~~~~d~~~iI-~~gPMGCrT--------GFYl~~~g~-----~~~~ 96 (154)
T d1j98a_ 31 NKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDII-DISPMGCQT--------GYYLVVSGE-----TTSA 96 (154)
T ss_dssp EEEEEECSCTTTCCCCHHHHHHHHHHHHHHHHHHHTTCSSEEEE-EEEECTTSS--------EEEEEEEEC-----CCHH
T ss_pred EEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE-EECCCCCCC--------CCEEEEECC-----CCHH
T ss_conf 99887424888323787313799998899987282436885289-957976563--------037988789-----8999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69999995468656652045779999776788532111234
Q 000260 361 CLCYIFHHMAREMDVILGQQTAQPANSCTSENGVSFLDQVI 401 (1770)
Q Consensus 361 CLCfIFH~Ma~el~~~L~~~~~~~~~~~~~~~e~sFLd~VI 401 (1770)
=+.=+.+.+. .+++.-. ..| -+...+-|.|+++=.
T Consensus 97 ~i~~l~~~~l---~~i~~~~-eVP--ga~~~~CGny~~hsL 131 (154)
T d1j98a_ 97 EIVDLLEDTM---KEAVEIT-EIP--AANEKQCGQAKLHDL 131 (154)
T ss_dssp HHHHHHHHHH---HHHTTCC-SCT--TCSTTTCTTTTCCCH
T ss_pred HHHHHHHHHH---HHHHCCC-CCC--CCCHHCCCCHHHCCH
T ss_conf 9999999999---9986347-688--877222989366999
No 2
>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}
Probab=5.64 E-value=61 Score=6.22 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 25895011899861220599886
Q 000260 1299 IDMNQDNYFEEALKMRNLLEEFH 1321 (1770)
Q Consensus 1299 IDmNQDnYlEE~lKmrnlL~ef~ 1321 (1770)
+|...-+=+-|++|+..+.+.+.
T Consensus 174 ~d~~~~GGit~~~kia~la~~~g 196 (278)
T d2gl5a1 174 PDLCLCGGITEGKKICDYANIYD 196 (278)
T ss_dssp CCTTTTTHHHHHHHHHHHHHTTT
T ss_pred ECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 31210056366777654554403
No 3
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.51 E-value=80 Score=5.31 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 04331112010157200033213204
Q 000260 1402 SEDIYAGFNTTLRQGNVTHHEYIQVG 1427 (1770)
Q Consensus 1402 sEDifaG~n~~lRgG~i~h~eyiq~G 1427 (1770)
.||+=-++.....|++|.+..-..++
T Consensus 224 ~ED~Dl~~R~~~~G~~i~~~p~~~v~ 249 (328)
T d1xhba2 224 GENLEISFRIWQCGGTLEIVTCSHVG 249 (328)
T ss_dssp CCCSHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCEEEEECCEEEE
T ss_conf 56999999999809919993776999
No 4
>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}
Probab=3.48 E-value=1.1e+02 Score=4.28 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=44.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 0010279999999940299999---9999998549999766158765431112472458999999998660233543452
Q 000260 283 NEQSRLGIPDENEPKLDEAAVQ---RVFMKSLDNYIKWCDYLCIQPVWSSLEAVGKEKKILFVSLYLLIWGEAANIRFLP 359 (1770)
Q Consensus 283 Nr~sR~~~~~~~~~~Ld~~AL~---~Lh~k~f~NYkkWC~fL~~k~~w~~~~~~s~~~~ll~iALYLLIWGEAaNLRFMP 359 (1770)
+-..|+..|++ +-++..++. .|.+.++.|+..|-- -|.||.+++ +.||++||+ .-|
T Consensus 31 ~fDlR~~qPN~--~~m~~~~~HTlEHL~A~~lRn~~~~iI------d~sPMGCrT--------GFYl~~~g~-----~~~ 89 (149)
T d1vjea_ 31 KYDLRFLQPNQ--GAIDPAAIHTLEHLLAGYMRDHLEGVV------DVSPMGCRT--------GMYMAVIGE-----PDE 89 (149)
T ss_dssp EEEEECSCTTS--CCCCHHHHHHHHHHHHHHHHHHCTTEE------EEEECTTSS--------EEEEEEESS-----CCH
T ss_pred EEEEEECCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCEE------EECCCCCCC--------CCEEEEECC-----CCH
T ss_conf 98886427984--558874124999988988873778848------887876562--------027988579-----999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4699999954686566520457799997767885321112
Q 000260 360 ECLCYIFHHMAREMDVILGQQTAQPANSCTSENGVSFLDQ 399 (1770)
Q Consensus 360 ECLCfIFH~Ma~el~~~L~~~~~~~~~~~~~~~e~sFLd~ 399 (1770)
|=+.=+++.+. .+++.....-| -+...+-|.|+++
T Consensus 90 ~~i~~~~~~~l---~~i~~~~~~VP--ga~~~qCGny~~h 124 (149)
T d1vjea_ 90 QGVMKAFEAAL---KDTAGHDQPIP--GVSELECGNYRDH 124 (149)
T ss_dssp HHHHHHHHHHH---HHHHTCCSCCT--TCSTTTCTTTTCC
T ss_pred HHHHHHHHHHH---HHHHHCCCCCC--CCCHHCCCCHHHC
T ss_conf 99999999999---99983468888--8782318893668
No 5
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.99 E-value=82 Score=5.25 Aligned_cols=10 Identities=40% Similarity=1.002 Sum_probs=4.8
Q ss_pred EECCCCEEEC
Q ss_conf 7403430201
Q 000260 1331 ILGVREHVFT 1340 (1770)
Q Consensus 1331 IlG~RE~IFt 1340 (1770)
-+-+|+||||
T Consensus 19 ~~SvrdHiFs 28 (48)
T d2yrka1 19 RLSIRDHIFS 28 (48)
T ss_dssp SSCHHHHHTS
T ss_pred ECCHHHHHHH
T ss_conf 0216766522
No 6
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.96 E-value=1.3e+02 Score=3.64 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=18.0
Q ss_pred CCCEEEEECCCCCCCCCCCCCC
Q ss_conf 5441222035431122589501
Q 000260 1284 QNHAVIFTRGNAIQTIDMNQDN 1305 (1770)
Q Consensus 1284 QNhAiiFtRGe~lQtIDmNQDn 1305 (1770)
..||.|-..++.+...|.+..|
T Consensus 52 ~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 52 PHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp SSCEEEEESSSCEEEEESCSSS
T ss_pred EEEEEEEECCCCCEEECCCCCC
T ss_conf 2199999724631995278886
No 7
>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Helicobacter pylori [TaxId: 210]}
Probab=2.77 E-value=47 Score=7.05 Aligned_cols=57 Identities=11% Similarity=0.217 Sum_probs=0.0
Q ss_pred HCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 70001027-999999994029999999999985499997661587654311124724589999999986602
Q 000260 281 LANEQSRL-GIPDENEPKLDEAAVQRVFMKSLDNYIKWCDYLCIQPVWSSLEAVGKEKKILFVSLYLLIWGE 351 (1770)
Q Consensus 281 LaNr~sR~-~~~~~~~~~Ld~~AL~~Lh~k~f~NYkkWC~fL~~k~~w~~~~~~s~~~~ll~iALYLLIWGE 351 (1770)
+.+-..|+ .|..+..+.-.-++|..|.|.++.|+..|--+ |.||.+.+. .||++||+
T Consensus 34 it~fDlR~~qPN~e~m~~~~lHTlEHL~At~lRn~~d~iI~------~gPMGCrTG--------FYli~~g~ 91 (151)
T d1j6xa_ 34 IVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHANYVVD------WSPMGCQTG--------FYLTVLNH 91 (151)
T ss_dssp EEEEEEECSCTTTCCCCHHHHHHHHHHHHHHHHHHCSCEEE------EEECTTSSE--------EEEEEESC
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE------ECCCCCCCC--------CEEEEECC
T ss_conf 99887600588847589820469999888888618798388------788765610--------48988469
No 8
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.67 E-value=1.5e+02 Score=3.24 Aligned_cols=8 Identities=38% Similarity=0.900 Sum_probs=0.0
Q ss_pred CCCCEEEE
Q ss_conf 35823632
Q 000260 1587 HGGARYQA 1594 (1770)
Q Consensus 1587 ~GgAkY~a 1594 (1770)
+||+||++
T Consensus 11 ~gg~kyis 18 (29)
T d1x4la1 11 LGGTKYIS 18 (29)
T ss_dssp SSSCSCEE
T ss_pred CCCCEEEE
T ss_conf 57725887
No 9
>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.52 E-value=1.6e+02 Score=3.01 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=0.0
Q ss_pred ECCCCCCCCCCCCCCCCCEE-EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEECCC-----
Q ss_conf 54899878889877854412-220354311225895011899861220599886306999964740343020166-----
Q 000260 1269 KLPGNPKLGEGKPENQNHAV-IFTRGNAIQTIDMNQDNYFEEALKMRNLLEEFHADHGIRPPTILGVREHVFTGS----- 1342 (1770)
Q Consensus 1269 kLpG~pilGeGKpeNQNhAi-iFtRGe~lQtIDmNQDnYlEE~lKmrnlL~ef~~~~~~~~~~IlG~RE~IFt~~----- 1342 (1770)
++|-|.+++|+++|--||++ -=.-|-++-.|..+-..-.--+|+ |.|.--+- +.-.|.++|+---|=.++
T Consensus 32 ~~~~~~~~ie~~fer~~~~l~le~d~v~LaVi~seGns~v~rnL~--n~l~Am~v--~~~~v~~iGvA~DvDe~~ev~~~ 107 (241)
T d2p62a1 32 KLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLK--SVLDSVKL--GLLNVEEVYVVRDVDEGNDVFEW 107 (241)
T ss_dssp SCCCCCCHHHHCCCTTCCCEEEEETTEEEEEECSCCTTTHHHHHH--HHHHHHHH--TCCCEEEEEEEEESSSSSCHHHH
T ss_pred CCCCCCCHHHHHCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHH--HHHHHHHH--HCCCHHEEEEEEECCCCHHHHHH
T ss_conf 489766114432355663313433885899984788413778999--99999997--44461116888743760788999
Q ss_pred -CHHHCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCC
Q ss_conf -121201111211366676677411656422-22368954321
Q 000260 1343 -VSSLAYFMSNQETSFVTLGQRVLANPLKCR-MHYGHPDVFDR 1383 (1770)
Q Consensus 1343 -vssLa~f~a~qE~sF~Tl~qR~la~Pl~vr-~HYGHPDvfd~ 1383 (1770)
.|.|..+....+..|-... -+-..|+++- .+.++|++.-+
T Consensus 108 ~~s~l~~~e~~~~~g~~~~~-~~~i~pl~Ig~~~~~~p~~~~K 149 (241)
T d2p62a1 108 VLSFLREREVRVDNGAIVTE-GVKIYPYGMGNLTLNEPFVKEK 149 (241)
T ss_dssp HHTTCTTCCCEEETTEEEET-TEEEEEEEECCSCCCCTTBCCC
T ss_pred HHHHHHCCCCCCCCCEEEEC-CEEEEEEEECCCCCCCCHHHHC
T ss_conf 99986236754467728974-6699997633646686146542
No 10
>d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=2.51 E-value=1.6e+02 Score=3.00 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3689998769999986001258756611289999999999
Q 000260 88 VLQFKTGLMSVIKQKLAKREVGTIDRSQDVARLQEFYKRY 127 (1770)
Q Consensus 88 VrQFKt~Ll~~Leq~le~~~~~~I~~s~D~~elq~fy~~Y 127 (1770)
|+|.+-.|+.+++..-..|....+..++|-.+++..|+.|
T Consensus 1 v~~~kd~l~~R~~~lY~~D~~~~iR~s~eNp~V~~LY~e~ 40 (88)
T d1hfes_ 1 VKQIKDYMLDRINGVYGADAKFPVRASQDNTQVKALYKSY 40 (88)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCSCCSGGGCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 9508999999999999987347767887699999999999
Done!