Query 000261
Match_columns 1769
No_of_seqs 271 out of 413
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 18:39:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000261.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_37-41//hhsearch_pdb/000261hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxl_A Vacuolar protein sortin 1.0 1 1 221.0 11.4 128 36-182 7-134 (183)
2 2rkk_A Vacuolar protein sortin 1.0 1 1 159.2 10.5 119 48-182 5-139 (168)
3 2ysr_A DEP domain-containing p 1.0 1 1 18.5 -0.8 31 800-830 8-38 (105)
4 2z86_A Chondroitin synthase; G 1.0 1 1 17.2 -0.4 189 1191-1420 375-565 (625)
5 3fgr_B Putative phospholipase 1.0 1 1 16.4 0.5 15 1371-1385 328-342 (357)
6 2zpa_A Uncharacterized protein 1.0 1 1 16.2 -0.7 12 1696-1707 635-646 (671)
7 3n4p_A Terminase subunit UL89 1.0 1 1 15.9 0.6 54 794-857 142-195 (279)
8 2bsz_A Arylamine N-acetyltrans 1.0 1 1 15.2 -1.6 16 1335-1350 177-192 (278)
9 2vfb_A Arylamine N-acetyltrans 1.0 1 1 15.2 -1.1 16 1335-1350 177-192 (280)
10 1ich_A TNF-1, tumor necrosis f 1.0 1 1 14.5 1.1 76 1087-1162 15-102 (112)
No 1
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=1.00 E-value=1 Score=220.97 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=115.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 78899685687771379864332114798023473799998600389988982148999899999999874210011354
Q 000261 36 AGAVPPSLGRTSNIDAILQAADEIQDENPNVARILCEQAYSMAQNLDPNSDGRGVLQFKTGLMSIIKQKLAKRENVRIDR 115 (1769)
Q Consensus 36 s~~VP~sL~~~~~I~~iLr~A~Eie~~dP~VAyicr~yA~~~a~~lDp~S~grgVrQFkt~Ll~~LE~~~~~~~~~~~~~ 115 (1769)
-+.||++|| +|.||||+|+|+|++||+||||||+||+++++++|+ .|+||+||+|+||++||+++++ ++++..+
T Consensus 7 l~~vP~~LK---~I~p~L~~A~Ele~~~PvVaY~Cr~yA~e~~l~l~~--~~~e~~~f~~~LLd~LE~~K~~-~~~~dai 80 (183)
T 2lxl_A 7 LPPLPAQFK---SIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDS--KTPECRKFLSKLMDQLEALKKQ-LGDNEAI 80 (183)
T ss_dssp CCCCCGGGS---SSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCS--CCTTHHHHHHHHHHHHHHHHHH-HCSCHHH
T ss_pred CCCCCHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHH-CCCHHHH
T ss_conf 999986678---679999999998641637889999999999863056--8846999999999999998875-2320477
Q ss_pred CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1429999999999998610128769886310158875179883999999999999999999993049
Q 000261 116 NQDIEQLWEFYKLYKRRHRVDDIQRQEQNLQESGTFSSELELRSLEMRKVIATLRALVEVLEALSKD 182 (1769)
Q Consensus 116 s~D~~~lq~fy~~Y~~k~~i~ald~edr~~res~~f~~~~~~~~~~~~K~f~tA~vL~eVL~~~~~~ 182 (1769)
+ |-...|.|+++|+.|.|.+| |++||+ ++++ ++++|.|+||++|||||++||+.
T Consensus 81 ~-~~~~~~ayve~fAlklF~~A-d~~dRa----~~~t-------~~~~k~F~aA~~f~eVL~~fg~l 134 (183)
T 2lxl_A 81 T-QEIVGCAHLENYALKMFLYA-DNEDRA----GRFH-------KNMIKSFYTASLLIDVITVFGEL 134 (183)
T ss_dssp H-CHHHHHHHHHHHHHHHHHHH-HHHHHT----TCCC-------HHHHHHHHHHHHHHHHHHTTSCC
T ss_pred H-HHHHHHHHHHHHHHHHHHHH-HHHHHC----CCHH-------HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6-29999999999999999989-877651----3505-------99999999999999999987799
No 2
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=159.18 Aligned_cols=119 Identities=10% Similarity=0.121 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC------------
Q ss_conf 713798643321147-9802347379999860038998898214899989999999987421001135------------
Q 000261 48 NIDAILQAADEIQDE-NPNVARILCEQAYSMAQNLDPNSDGRGVLQFKTGLMSIIKQKLAKRENVRID------------ 114 (1769)
Q Consensus 48 ~I~~iLr~A~Eie~~-dP~VAyicr~yA~~~a~~lDp~S~grgVrQFkt~Ll~~LE~~~~~~~~~~~~------------ 114 (1769)
+|.|+|++|+|+++. +|.||||||+||.|.+++++. +++++++|.+.||++||+.|+. ++++.+
T Consensus 5 ~i~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~~~--~s~e~~~~l~~LlD~LE~~K~~-~~~~e~~~~~~~~~~~~~ 81 (168)
T 2rkk_A 5 NAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEED--RSQEMTALATELLDTIEAFKKE-IGGESEAEDSDKSLHVMN 81 (168)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCTT--CCHHHHHHHHHHHHHHHHHHHT-TC-----------CTTTT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHH
T ss_conf 2899999999988456862039999999999873689--9868999999999999999986-235321121000025654
Q ss_pred --CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCC
Q ss_conf --41429999999999998610128769886310158875179883999999999-999999999993049
Q 000261 115 --RNQDIEQLWEFYKLYKRRHRVDDIQRQEQNLQESGTFSSELELRSLEMRKVIA-TLRALVEVLEALSKD 182 (1769)
Q Consensus 115 --~s~D~~~lq~fy~~Y~~k~~i~ald~edr~~res~~f~~~~~~~~~~~~K~f~-tA~vL~eVL~~~~~~ 182 (1769)
.+ |-...+.+.++|+.|.|..| |++||+ |+++ ++++|.|+ ||..+++||..||+.
T Consensus 82 ~~i~-d~~~a~a~ve~FAlklF~~A-d~~dra----g~~~-------k~~~k~fy~ta~~F~avl~~fg~~ 139 (168)
T 2rkk_A 82 TLIH-DQEKAKIYMLNFTMSLYNEK-LKQLKD----GPWD-------VMLKRSLWCCIDLFSCILHLWKEN 139 (168)
T ss_dssp HHHH-CHHHHHHHHHHHHHHHHHHH-HHHHHT----SCCS-------HHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHCC-CHHHHHHHHHHHHHHHHHHH-HHHHHC----CCCC-------HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5415-48999999999999999988-988865----8720-------668989999999999999870886
No 3
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=18.51 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 1201337999851022336670010212235
Q 000261 800 SIFSPFWNEIIKSLREEDFISNREMDLLSIP 830 (1769)
Q Consensus 800 ~~Fa~vWNeII~SmReEDLIS~rE~~lL~~p 830 (1769)
.+...+||+||..||....|-||...+=.++
T Consensus 8 ~~at~lw~~ii~~~~~g~~ikdrr~~lk~y~ 38 (105)
T 2ysr_A 8 YRATKLWNEVTTSFRAGMPLRKHRQHFKKYG 38 (105)
T ss_dssp HHHHHHHHHHHHHHHHSCSCCCCCCSSSSCS
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEECCEECC
T ss_conf 1178999999999975997532346889988
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=17.22 Aligned_cols=189 Identities=16% Similarity=0.139 Sum_probs=84.7
Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHH-HHCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 764199986313446868881158899999-7397718984033455447998541578775402678852303774248
Q 000261 1191 LKFTYVVSCQIYGQQKQRKAPEAADIALLL-QRNEALRVAFIHVEDSSAADGKVSKEFFSKLVKADIHGKDQEIYSIRLP 1269 (1769)
Q Consensus 1191 ~KF~yVVscQ~Yg~~k~~~~~~a~~i~~L~-~~~p~Lrvayid~~~~~~~~g~~~~~yyS~Lik~~~~g~~~~~yrikLp 1269 (1769)
.+.+-|+.+ |.. + +.-.+-|+-++ +.||+..|--+|.-.. ++..+ .++.... .+..+.-+. +
T Consensus 375 ~~vsiii~~--yn~---~-~~l~~~l~s~~~q~~~~~eiivvdd~S~---d~t~~------~~~~~~~-~~~~i~~~~-~ 437 (625)
T 2z86_A 375 PLVSIYIPA--YNC---S-KYIVRCVESALNQTITDLEVCICDDGST---DDTLR------ILQEHYA-NHPRVRFIS-Q 437 (625)
T ss_dssp CSEEEEEEE--SSC---T-TTHHHHHHHHHSSSCCSEEEEEEEESCS---SSHHH------HHHHHHT-TCTTEEEEE-E
T ss_pred CEEEEEEEC--CCC---H-HHHHHHHHHHHHCCCCCEEEEEEECCCC---HHHHH------HHHHHHH-HCCCEEEEE-C
T ss_conf 717999957--898---8-9999999999817699828999989698---64999------9999885-499389991-7
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCCEEECCCCCEECCCCCCCCCCC
Q ss_conf 998668898757321233202321000146630129-9998332159988630499997364023201026620000001
Q 000261 1270 GDPKLGEGKPENQNHAIIFTRGEAIQTIDMNQDNYL-EEAMKMRNLLEEFRTDHGIRPPSILGVREHVFTGSVSSLAWFM 1348 (1769)
Q Consensus 1270 G~pilGeGKpeNQNhAiiFtRGE~lQtIDmNQDnYl-eE~lKmrnlL~ef~~~~~~~~~~IlG~RE~iFt~~vssLa~f~ 1348 (1769)
.| .|++.+-|.++-.++|||+-.+|. |..+ .++| ..+++.|++++ .+.+++.....+.++-..+....
T Consensus 438 ~n----~G~~~a~n~g~~~a~g~~i~~ld~--D~~~~~~~l--~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~ 506 (625)
T 2z86_A 438 KN----KGIGSASNTAVRLCRGFYIGQLDS--DDFLEPDAV--ELCLDEFRKDL---SLACVYTTNRNIDREGNLISNGY 506 (625)
T ss_dssp CC----CCHHHHHHHHHHHCCSSEEEECCT--TCEECTTHH--HHHHHHHHHCT---TCSEEEEEEEEECTTSCEEEECC
T ss_pred CC----CCHHHHHHHHHHHCCCCEEEEECC--CCCCCHHHH--HHHHHHHHHCC---CEEEEEEEEEEECCCCCEECCCC
T ss_conf 98----898999999998567787999889--766283599--99999998479---81399820489879998741676
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf 121237777767762065520000369843321010236863322100034044310101113673012555
Q 000261 1349 SNQETSFVTLGQRVLANPLKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRQGNVTHHE 1420 (1769)
Q Consensus 1349 a~qE~sF~Tl~qR~la~Pl~vr~HYGHPDvfd~~F~~trGGvSKAsk~i~lsEDifaG~n~~lRgG~Ith~E 1420 (1769)
.....+- .. +...+-.||.-++.+-....-||....- ...||.--.......| ++.|..
T Consensus 507 ~~~~~~~----~~-----~~~~~~~~~~~~~~r~~~~~~ggfd~~~---~~~eD~dl~~r~~~~g-~~~~~~ 565 (625)
T 2z86_A 507 NWPIYSR----EK-----LTSAMICHHFRMFTARAWNLTEGFNESI---SNAVDYDMYLKLSEVG-PFKHIN 565 (625)
T ss_dssp CCSSCCH----HH-----HTTSCCCCSCEEEEHHHHTTTTCCCSSC---SSCHHHHHHHHHTTTS-CEEEEE
T ss_pred CCCCCCH----HH-----HHHCCCCCCEEEEEHHHHHHHCCCCCCC---CCHHHHHHHHHHHHHC-CEEEEC
T ss_conf 6665788----89-----8535467746898899999728999736---8727999999999749-999828
No 5
>3fgr_B Putative phospholipase B-like 2 40 kDa form; alpha beta, glycosylated, disulphide bonds, N-terminal nucle hydrolase fold, two chain form; HET: NAG; 1.80A {Mus musculus} PDB: 3fgt_B*
Probab=1.00 E-value=1 Score=16.40 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=12.1
Q ss_pred EECCCCCCCCCCCCC
Q ss_conf 003698433210102
Q 000261 1371 MHYGHPDVFDRIFHI 1385 (1769)
Q Consensus 1371 ~HYGHPDvfd~~F~~ 1385 (1769)
.|+||||+||=-|..
T Consensus 328 ~H~G~Pd~~~F~~v~ 342 (357)
T 3fgr_B 328 LHMGQPDLWMFSPIR 342 (357)
T ss_dssp CCTTCCSEECCCCEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 969988672777789
No 6
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=16.18 Aligned_cols=12 Identities=17% Similarity=-0.061 Sum_probs=4.8
Q ss_pred CCHHHHHHHHHH
Q ss_conf 864897599886
Q 000261 1696 NSWEAWWDEEQM 1707 (1769)
Q Consensus 1696 ~sW~~Ww~~e~~ 1707 (1769)
+.|...|+++..
T Consensus 635 k~~~~~lR~~~~ 646 (671)
T 2zpa_A 635 KMLLVRQREEAA 646 (671)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 7
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=1.00 E-value=1 Score=15.89 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=40.6
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHH
Q ss_conf 2110001201337999851022336670010212235899986544450456210278999999
Q 000261 794 LNKEYASIFSPFWNEIIKSLREEDFISNREMDLLSIPSNTGSLRLVQWPLFLLSSKIFLAIDLA 857 (1769)
Q Consensus 794 ~~~~~~~~Fa~vWNeII~SmReEDLIS~rE~~lL~~p~~~~~~~~i~wP~FLla~ki~~Al~~a 857 (1769)
.++..+...|-.-++.+.+.+.- +++-+...+++ .++||-|||..+=..|.|.-
T Consensus 142 SsQdsAVaIA~~i~~~~~~~~~~--------~~~FyH~~d~~--~v~~PfylL~~eK~~Afe~F 195 (279)
T 3n4p_A 142 TNQAAAVRIACLIRQSVQSSTLI--------RVLFYHTPDQN--HIEQPFYLMGRDKALAVEQF 195 (279)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCC--------EEEEECEEETT--TEEESCBCCSTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCC--------CEEEEECCCCC--CCCCCCHHHCCCHHHHHHHH
T ss_conf 41889999999999876424566--------37998417986--43087312064047999999
No 8
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=1.00 E-value=1 Score=15.20 Aligned_cols=16 Identities=6% Similarity=-0.197 Sum_probs=8.6
Q ss_pred CEECCCCCCCCCCCCC
Q ss_conf 0102662000000112
Q 000261 1335 HVFTGSVSSLAWFMSN 1350 (1769)
Q Consensus 1335 ~iFt~~vssLa~f~a~ 1350 (1769)
|-|+..--..+||...
T Consensus 177 Y~F~~~~~~~~Df~~~ 192 (278)
T 2bsz_A 177 YRFDLQPQYEVDYSVT 192 (278)
T ss_dssp EEECCCCBCHHHHHHH
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9985776689999999
No 9
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=1.00 E-value=1 Score=15.17 Aligned_cols=16 Identities=6% Similarity=-0.114 Sum_probs=7.8
Q ss_pred CEECCCCCCCCCCCCC
Q ss_conf 0102662000000112
Q 000261 1335 HVFTGSVSSLAWFMSN 1350 (1769)
Q Consensus 1335 ~iFt~~vssLa~f~a~ 1350 (1769)
|-|+..--..+||...
T Consensus 177 Y~F~~~~~~~~Df~~~ 192 (280)
T 2vfb_A 177 YEFSTLTRPQVDLRVG 192 (280)
T ss_dssp EEECCSCCCHHHHHHH
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9995775788999997
No 10
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=1.00 E-value=1 Score=14.52 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHCC-HHHHHHHHHHCCCCCCCCCCCCCCCCHHHH-----HHHHHHCCC------CCHHHCCCCHHCHHHHHHH
Q ss_conf 9999996297-046649998258999988775468811355-----443343044------3110200000027999888
Q 000261 1087 ILFYLQKIFP-DEWENFLERIGRGESAGGVDLQENSTDSLE-----LRFWASYRG------QTLARTVRGMMYYRRALML 1154 (1769)
Q Consensus 1087 iL~YLq~iyP-dEW~NFlER~~~~~~~~e~~~~~~~~~~le-----lRlWAS~Rg------QTL~RTVrGmMyY~~ALkl 1154 (1769)
+|+..-..-| .+|+.|+.++|..+..-|+--.+.+....| ||.|---.| +||..+.|-|=--.-|-++
T Consensus 15 ~l~~i~d~v~~~~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~~ae~I 94 (112)
T 1ich_A 15 TLYAVVENVPPLRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLGCLEDI 94 (112)
T ss_dssp HHHHHHHHSCSTTHHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf 99999996789999999999199888999999877687599999999999986488877499999999982627799999
Q ss_pred HHHHCCCC
Q ss_conf 66320499
Q 000261 1155 QSYLERRP 1162 (1769)
Q Consensus 1155 l~~lE~~~ 1162 (1769)
+..++..+
T Consensus 95 e~~l~~~~ 102 (112)
T 1ich_A 95 EEALCGPA 102 (112)
T ss_dssp HHHHC---
T ss_pred HHHHHCCC
T ss_conf 99985334
Done!