Query 000261
Match_columns 1769
No_of_seqs 271 out of 413
Neff 4.6
Searched_HMMs 13730
Date Tue Mar 26 18:47:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000261.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_37-41//hhsearch_scop/000261hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 5.7 60 0.0044 6.0 1.9 34 1276-1309 93-129 (328)
2 d2gl5a1 c.1.11.2 (A:123-400) P 4.7 71 0.0052 5.5 -0.1 88 1214-1319 108-196 (278)
3 d2yrka1 g.37.1.4 (A:8-55) Zinc 2.9 84 0.0061 4.9 -1.1 11 1328-1338 18-28 (48)
4 d2gdqa1 c.1.11.2 (A:119-374) H 2.8 1.3E+02 0.0092 3.6 -0.3 125 1182-1344 56-184 (256)
5 d1dfma_ c.52.1.5 (A:) Restrict 2.8 1.4E+02 0.011 3.2 2.7 54 1278-1335 120-173 (223)
6 d1wlna1 b.26.1.2 (A:8-114) Afa 2.4 1.7E+02 0.012 2.6 2.3 58 1245-1303 5-73 (107)
7 d1w4ta1 d.3.1.5 (A:1-277) Aryl 2.2 1.9E+02 0.014 2.3 0.4 88 1371-1458 47-157 (277)
8 d1t8ha_ d.194.1.2 (A:) Hypothe 2.2 1.9E+02 0.014 2.3 1.8 30 1376-1414 2-49 (272)
9 d1sq5a_ c.37.1.6 (A:) Pantothe 2.2 1.9E+02 0.014 2.3 5.4 57 1304-1378 57-113 (308)
10 d1t4wa_ b.2.5.2 (A:) Transcrip 2.2 1.9E+02 0.014 2.2 0.9 11 1095-1105 180-191 (196)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.68 E-value=60 Score=6.03 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=25.1
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCC---CCCHHHHHH
Q ss_conf 8987573212332023210001466---301299998
Q 000261 1276 EGKPENQNHAIIFTRGEAIQTIDMN---QDNYLEEAM 1309 (1769)
Q Consensus 1276 eGKpeNQNhAiiFtRGE~lQtIDmN---QDnYleE~l 1309 (1769)
-|.+...|.++-.++||++-.+|.- ..++||+.+
T Consensus 93 ~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 93 SGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp CCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHH
T ss_conf 3216887899986311002201765566736999999
No 2
>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}
Probab=4.74 E-value=71 Score=5.49 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 88999997397718984033455447998541578775402678852303774248998668898757321233202321
Q 000261 1214 ADIALLLQRNEALRVAFIHVEDSSAADGKVSKEFFSKLVKADIHGKDQEIYSIRLPGDPKLGEGKPENQNHAIIFTRGEA 1293 (1769)
Q Consensus 1214 ~~i~~L~~~~p~Lrvayid~~~~~~~~g~~~~~yyS~Lik~~~~g~~~~~yrikLpG~pilGeGKpeNQNhAiiFtRGE~ 1293 (1769)
++...+++.-..+.+.+++|.-. . +. ..-|..| |=+++-|...||--..-+...-....|-.
T Consensus 108 ~~Ai~~~~~L~~~~l~wiEePi~-~-~d---~~~~~~L-------------~~~~~ipIa~gE~~~~~~~~~~~i~~~a~ 169 (278)
T d2gl5a1 108 NSAIQFAKAIEKYRIFLYEEPIH-P-LN---SDNMQKV-------------SRSTTIPIATGERSYTRWGYRELLEKQSI 169 (278)
T ss_dssp HHHHHHHHHHGGGCEEEEECSSC-S-SC---HHHHHHH-------------HHHCSSCEEECTTCCTTHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCEECCCCC-C-CC---HHHHHHH-------------CCCCCCCEECCCCCCCHHHHHHHHCCCCC
T ss_conf 15677887751343210036632-2-35---3555430-------------10324533225554785787654203541
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -00014663012999983321599886
Q 000261 1294 -IQTIDMNQDNYLEEAMKMRNLLEEFR 1319 (1769)
Q Consensus 1294 -lQtIDmNQDnYleE~lKmrnlL~ef~ 1319 (1769)
+=-+|...-+=+-|++|+..+.+.+.
T Consensus 170 di~~~d~~~~GGit~~~kia~la~~~g 196 (278)
T d2gl5a1 170 AVAQPDLCLCGGITEGKKICDYANIYD 196 (278)
T ss_dssp SEECCCTTTTTHHHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 267531210056366777654554403
No 3
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.87 E-value=84 Score=4.92 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=5.3
Q ss_pred EEECCCCCEEC
Q ss_conf 36402320102
Q 000261 1328 SILGVREHVFT 1338 (1769)
Q Consensus 1328 ~IlG~RE~iFt 1338 (1769)
+-+-+|+||||
T Consensus 18 ~~~SvrdHiFs 28 (48)
T d2yrka1 18 ARLSIRDHIFS 28 (48)
T ss_dssp SSSCHHHHHTS
T ss_pred EECCHHHHHHH
T ss_conf 10216766522
No 4
>d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}
Probab=2.80 E-value=1.3e+02 Score=3.61 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=58.7
Q ss_pred HHHHHHHHCCCCCEEEEE-EECCCCCCCCCCCHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 999987520764199986-31344686888115889999973977-1898403345544799854157877540267885
Q 000261 1182 SHEARAQSDLKFTYVVSC-QIYGQQKQRKAPEAADIALLLQRNEA-LRVAFIHVEDSSAADGKVSKEFFSKLVKADIHGK 1259 (1769)
Q Consensus 1182 ~~~~~~~a~~KF~yVVsc-Q~Yg~~k~~~~~~a~~i~~L~~~~p~-Lrvayid~~~~~~~~g~~~~~yyS~Lik~~~~g~ 1259 (1769)
.+.++..+.-++...|-| |.| ..++...+++.-+. ..+.+++|.-. ... ..-++.|
T Consensus 56 v~avr~~~G~~~~l~vDan~~~---------~~~~A~~~~~~l~~~~~i~~~EeP~~---~~d--~~~~~~l-------- 113 (256)
T d2gdqa1 56 INALQHTAGSSITMILDANQSY---------DAAAAFKWERYFSEWTNIGWLEEPLP---FDQ--PQDYAML-------- 113 (256)
T ss_dssp HHHHHHHHCTTSEEEEECTTCC---------CHHHHHTTHHHHTTCSCEEEEECCSC---SSC--HHHHHHH--------
T ss_pred HHHHHHHCCCCEEEEECCCCCC---------CHHHHHHHHHHHHHCCCEEEECCCCC---CCH--HHHHHHH--------
T ss_conf 9999997398728862455577---------77889999999862585257526511---006--8888877--------
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEE
Q ss_conf 2303774248998668898757321233202321000--14663012999983321599886304999973640232010
Q 000261 1260 DQEIYSIRLPGDPKLGEGKPENQNHAIIFTRGEAIQT--IDMNQDNYLEEAMKMRNLLEEFRTDHGIRPPSILGVREHVF 1337 (1769)
Q Consensus 1260 ~~~~yrikLpG~pilGeGKpeNQNhAiiFtRGE~lQt--IDmNQDnYleE~lKmrnlL~ef~~~~~~~~~~IlG~RE~iF 1337 (1769)
|-+++=+...||.-..-+...- +..-.+++. +|...-+=+-|++||..+.+++. . ++.+ |-+
T Consensus 114 -----~~~~~ipIa~gE~~~~~~~~~~-~i~~~a~di~~~d~~~~GGit~~~~i~~~a~~~~----i-~v~~-----h~~ 177 (256)
T d2gdqa1 114 -----RSRLSVPVAGGENMKGPAQYVP-LLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFG----V-RASA-----HAY 177 (256)
T ss_dssp -----HTTCSSCEEECTTCCSHHHHHH-HHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHHT----C-EECC-----CCS
T ss_pred -----HHCCCCEEECCCCCCCHHHHHH-HHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHC----C-CCCC-----CCC
T ss_conf -----6313111335764321366898-9875234156014455655878999998875312----3-5564-----522
Q ss_pred CCCCCCC
Q ss_conf 2662000
Q 000261 1338 TGSVSSL 1344 (1769)
Q Consensus 1338 t~~vssL 1344 (1769)
+++++.+
T Consensus 178 ~~~i~~~ 184 (256)
T d2gdqa1 178 DGSLSRL 184 (256)
T ss_dssp SCSHHHH
T ss_pred CCCCCHH
T ss_conf 0231128
No 5
>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
Probab=2.77 E-value=1.4e+02 Score=3.17 Aligned_cols=54 Identities=30% Similarity=0.327 Sum_probs=34.7
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 8757321233202321000146630129999833215998863049999736402320
Q 000261 1278 KPENQNHAIIFTRGEAIQTIDMNQDNYLEEAMKMRNLLEEFRTDHGIRPPSILGVREH 1335 (1769)
Q Consensus 1278 KpeNQNhAiiFtRGE~lQtIDmNQDnYleE~lKmrnlL~ef~~~~~~~~~~IlG~RE~ 1335 (1769)
+.++-+.+||-|.| .+-+-.|-++|+|.+.--=+-|.+..-. .-|+.|||.-|-
T Consensus 120 ~~~~t~~~Ii~tk~--~~~~asn~~~y~e~~~~~L~~l~~~~v~--dvPi~~~gi~e~ 173 (223)
T d1dfma_ 120 DEEGMKVAIIITKG--HMFPASNSSLYYEQAQNQLNSLAEYNVF--DVPIRLVGLIED 173 (223)
T ss_dssp SSSBCCEEEEEEEC--TTSCCSTTBCCHHHHHHHHHHHHHTTCC--CSCEEEEEEECC
T ss_pred CCCCCCEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCCC--CCCEEEEEECCC
T ss_conf 02466569999624--3420346147999999999862736323--455555660572
No 6
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.42 E-value=1.7e+02 Score=2.63 Aligned_cols=58 Identities=9% Similarity=0.125 Sum_probs=0.0
Q ss_pred CEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCC-----------CCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 1578775402678852303774248998668898757-----------3212332023210001466301
Q 000261 1245 KEFFSKLVKADIHGKDQEIYSIRLPGDPKLGEGKPEN-----------QNHAIIFTRGEAIQTIDMNQDN 1303 (1769)
Q Consensus 1245 ~~yyS~Lik~~~~g~~~~~yrikLpG~pilGeGKpeN-----------QNhAiiFtRGE~lQtIDmNQDn 1303 (1769)
+..-...-++...+....+|+++ +|...+|-|+++. ..||.|-..++.+...|.+..|
T Consensus 5 P~Ll~l~~dg~~~~~~~~~~~l~-~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 5 PYLVELSPDGSDSRDKPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp CEEEEECSSSCCCSSCCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred CEEEEECCCCCCCCCCCEEEEEC-CCCEEECCCCCCCCCEEECCCCEEEEEEEEEECCCCCEEECCCCCC
T ss_conf 88999889866688864899979-9987999987899849989965332199999724631995278886
No 7
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.24 E-value=1.9e+02 Score=2.33 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred EECCCC------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCE-------------EEEEE-EEECCCC--
Q ss_conf 003698------4332101023686332210003404431010111367301-------------25552-5414643--
Q 000261 1371 MHYGHP------DVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRQGNV-------------THHEY-IQVGKGR-- 1428 (1769)
Q Consensus 1371 ~HYGHP------Dvfd~~F~~trGGvSKAsk~i~lsEDifaG~n~~lRgG~I-------------th~EY-iQ~GKGR-- 1428 (1769)
.|+|+| ++|+|+-.--|||..=-.-++=-.==-=-||++.+-+|+| +|.-- ++++.++
T Consensus 47 ~~~g~~i~ld~~~l~~kiV~~~rGGyC~E~N~Lf~~lL~~LGf~v~~~~arV~~~~~~~~~~~~~~H~~l~V~i~~~~yl 126 (277)
T d1w4ta1 47 VLLDRPIEIDADKVFAKVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAEGEFL 126 (277)
T ss_dssp HHTTCCCCCSHHHHHHHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETTEEEE
T ss_pred HHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEE
T ss_conf 32399877999999999986577723451569999999986980699889997368888888887418999998990699
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -347521111101124876541101457730
Q 000261 1429 -DVGLNQIALFEGKVAGGNGEQVLSRDVYRL 1458 (1769)
Q Consensus 1429 -DvGlnqI~~FeaKIa~G~gEq~lSRd~yrL 1458 (1769)
||||+.-...+.=--.+-.+|.--.+.||+
T Consensus 127 vDvGfG~~~~~~Pl~l~~~~~~~~~~~~~r~ 157 (277)
T d1w4ta1 127 VDVGFGSANPPRALPLPGDEADAGQVHCVRL 157 (277)
T ss_dssp ECSCSGGGCCSSCEESSCCTTCTTCSEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 8403677685646237887531367517999
No 8
>d1t8ha_ d.194.1.2 (A:) Hypothetical protein YlmD {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.22 E-value=1.9e+02 Score=2.31 Aligned_cols=30 Identities=37% Similarity=0.608 Sum_probs=0.0
Q ss_pred CCCCC------------------CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 84332------------------1010236863322100034044310101113673
Q 000261 1376 PDVFD------------------RIFHITRGGISKASRVINISEDIYAGFNSTLRQG 1414 (1769)
Q Consensus 1376 PDvfd------------------~~F~~trGGvSKAsk~i~lsEDifaG~n~~lRgG 1414 (1769)
||+|+ .-|.+-.|||||. .|+++|.-..-|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~v~~gfttR~GGvS~~---------p~~slNl~~~vg 49 (272)
T d1t8ha_ 2 PDIFQQEARGWLRCGAPPFAGAVAGLTTKHGGESKG---------PFASLNMGLHVG 49 (272)
T ss_dssp CCSEEECSSSEEEECCGGGTTSEEEEECSCSCCCCG---------GGCSCCCCSSSS
T ss_pred CCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC---------CCCCCCCCCCCC
T ss_conf 622331146841589988899879986799884789---------777612779999
No 9
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=2.22 E-value=1.9e+02 Score=2.30 Aligned_cols=57 Identities=26% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 299998332159988630499997364023201026620000001121237777767762065520000369843
Q 000261 1304 YLEEAMKMRNLLEEFRTDHGIRPPSILGVREHVFTGSVSSLAWFMSNQETSFVTLGQRVLANPLKVRMHYGHPDV 1378 (1769)
Q Consensus 1304 YleE~lKmrnlL~ef~~~~~~~~~~IlG~RE~iFt~~vssLa~f~a~qE~sF~Tl~qR~la~Pl~vr~HYGHPDv 1378 (1769)
|.+++.+.....+.|....+.+.|-|+| .+|++|| -.+||...-+..|+. .+++|.|
T Consensus 57 ~~~~~~~~~~~~~~fl~~~~~k~P~iIG-----IaG~sgS-------GKSTla~~L~~lL~~------~~~~~~v 113 (308)
T d1sq5a_ 57 YISSNLRRQAVLEQFLGTNGQRIPYIIS-----IAGSVAV-------GKSTTARVLQALLSR------WPEHRRV 113 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCC-CCCCEEEE-----EEECTTS-------SHHHHHHHHHHHHTT------STTCCCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEE-----EECCCCC-------CCCHHHHHHHHHHHH------HCCCCCE
T ss_conf 9999999999999985344789988999-----9689999-------876899999999730------4689965
No 10
>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=2.18 E-value=1.9e+02 Score=2.22 Aligned_cols=11 Identities=55% Similarity=1.455 Sum_probs=0.0
Q ss_pred CC-HHHHHHHHH
Q ss_conf 97-046649998
Q 000261 1095 FP-DEWENFLER 1105 (1769)
Q Consensus 1095 yP-dEW~NFlER 1105 (1769)
|| .+|+||-||
T Consensus 180 yprrdwknfce~ 191 (196)
T d1t4wa_ 180 YPRRDWKNFCER 191 (196)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 341366766444
Done!