BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000262
(1768 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BIY|A Chain A, Crystal Structure Of P300 Histone Acetyltransferase Domain
In Complex With A Bisubstrate Inhibitor, Lys-Coa
Length = 380
Score = 217 bits (553), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 116/255 (45%), Positives = 154/255 (60%), Gaps = 26/255 (10%)
Query: 1150 LGAKDLPRTILSDHIEHRLFRRLKQERQERARIQGKSYDEVPGAEALVIRVVSSVDKKLE 1209
AK LP T L +E+R+ L+++ P + + +RVV + DK +E
Sbjct: 2 FSAKRLPSTRLGTFLENRVNDFLRRQNH-------------PESGEVTVRVVHASDKTVE 48
Query: 1210 VKQRFLEIFQEENYPTE-FPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSECQFPNQRRVY 1268
VK F + E FPY++K + F++I+GV++C FGM+VQE+GS+C PNQRRVY
Sbjct: 49 VKPGMKARFVDSGEMAESFPYRTKALFAFEEIDGVDLCFFGMHVQEYGSDCPPPNQRRVY 108
Query: 1269 LSYLDSVKYFRPEIKAVTGEALRTFVYHEILIGYLEYCKLRGFTSCYIWACPPLKGEDYI 1328
+SYLDSV +FRP+ LRT VYHEILIGYLEY K G+T+ +IWACPP +G+DYI
Sbjct: 109 ISYLDSVHFFRPK-------CLRTAVYHEILIGYLEYVKKLGYTTGHIWACPPSEGDDYI 161
Query: 1329 LYCHPEIQKTPKSDKLREWYLAMLRKAAKENIVVDLTNLYDHFFVSTGECRAKVTAARLP 1388
+CHP QK PK +L+EWY ML KA E IV D Y F E R +A LP
Sbjct: 162 FHCHPPDQKIPKPKRLQEWYKKMLDKAVSERIVHD----YKDIFKQATEDRL-TSAKELP 216
Query: 1389 YFDGDYWPGAAEDLI 1403
YF+GD+WP E+ I
Sbjct: 217 YFEGDFWPNVLEESI 231
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 1539 DKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHN 1585
D D ++ + D R AFL+L + H ++ +LRRA+ S+ +L LH
Sbjct: 328 DPDPLIPCDLMDGRDAFLTLARDRHLEFSSLRRAQWSTGCMLVELHT 374
>pdb|3T92|A Chain A, Crystal Structure Of The Taz2:cEBPEPSILON-Tad Chimera
Protein
Length = 121
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 60/87 (68%)
Query: 1655 RVLQLRKMLDLLVHASQCRSPHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQ 1714
R L +++ + LVHA+QCR+ +C P+C+K+K + +H CK + +GGC +CK++ L
Sbjct: 9 RRLSIQRAIQSLVHAAQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAA 68
Query: 1715 LHARACKESECHVPRCRDLKEHLRRLQ 1741
HA+ C+E++C VP C ++K+ LR+ Q
Sbjct: 69 YHAKHCQENKCPVPFCLNIKQKLRQQQ 95
>pdb|2K8F|A Chain A, Structural Basis For The Regulation Of P53 Function By P300
Length = 90
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 56/81 (69%)
Query: 1655 RVLQLRKMLDLLVHASQCRSPHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQ 1714
R L +++ + LVHA+QCR+ +C P+C+K+K + +H CK + +GGC +CK++ L
Sbjct: 9 RRLSIQRAIQSLVHAAQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAA 68
Query: 1715 LHARACKESECHVPRCRDLKE 1735
HA+ C+E++C VP C ++K+
Sbjct: 69 YHAKHCQENKCPVPFCLNIKQ 89
>pdb|2KA6|A Chain A, Nmr Structure Of The Cbp-Taz2STAT1-Tad Complex
pdb|2KJE|A Chain A, Nmr Structure Of Cbp Taz2 And Adenoviral E1a Complex
Length = 92
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 58/87 (66%)
Query: 1655 RVLQLRKMLDLLVHASQCRSPHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQ 1714
R L +++ + LVHA QCR+ +C P+C+K+K + +H CK + +GGC +CK++ L
Sbjct: 6 RRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCC 65
Query: 1715 LHARACKESECHVPRCRDLKEHLRRLQ 1741
HA+ C+E++C VP C ++K LR+ Q
Sbjct: 66 YHAKHCQENKCPVPFCLNIKHKLRQQQ 92
>pdb|3IO2|A Chain A, Crystal Structure Of The Taz2 Domain Of P300
Length = 114
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 54/79 (68%)
Query: 1655 RVLQLRKMLDLLVHASQCRSPHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQ 1714
R L +++ + LVHA+QCR+ +C P+C+K+K + +H CK + +GGC +CK++ L
Sbjct: 9 RRLSIQRAIQSLVHAAQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAA 68
Query: 1715 LHARACKESECHVPRCRDL 1733
HA+ C+E++C VP C ++
Sbjct: 69 YHAKHCQENKCPVPFCLNI 87
>pdb|1F81|A Chain A, Solution Structure Of The Taz2 Domain Of The Transcriptional
Adaptor Protein Cbp
Length = 88
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 54/80 (67%)
Query: 1655 RVLQLRKMLDLLVHASQCRSPHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQ 1714
R L +++ + LVHA QCR+ +C P+C+K+K + +H CK + +GGC +CK++ L
Sbjct: 7 RRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCC 66
Query: 1715 LHARACKESECHVPRCRDLK 1734
HA+ C+E++C VP C ++K
Sbjct: 67 YHAKHCQENKCPVPFCLNIK 86
>pdb|3P57|P Chain P, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2 On
Dna
Length = 112
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 53/79 (67%)
Query: 1655 RVLQLRKMLDLLVHASQCRSPHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQ 1714
R L +++ + LVHA QCR+ +C P+C+K+K + +H CK + +GGC +CK++ L
Sbjct: 8 RRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALCC 67
Query: 1715 LHARACKESECHVPRCRDL 1733
HA+ C+E++C VP C ++
Sbjct: 68 YHAKHCQENKCPVPFCLNI 86
>pdb|1TOT|A Chain A, Zz Domain Of Cbp- A Novel Fold For A Protein Interaction
Module
Length = 52
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 1591 FVTTCNICHLDIETGQGWRCEVCPDYDVCNACYQKDGGIDHPHKL 1635
FV TCN C +ET W C VC DYD+C CY H HK+
Sbjct: 5 FVYTCNECKHHVETR--WHCTVCEDYDLCINCYNTK---SHTHKM 44
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 1088 KNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQA--EYTCPNCYITEVERGERKPLP 1145
K E+ ++++ CD+C+ W H C G + EY CP C TE PL
Sbjct: 14 KTPEDESKFYIGCDRCQNWYHGRCV---GILQSEAELIDEYVCPQCQSTEDAMTVLTPLT 70
Query: 1146 QSAVLGAKDLPRTI 1159
+ G K + R++
Sbjct: 71 EKDYEGLKRVLRSL 84
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 34.3 bits (77), Expect = 0.64, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 1088 KNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQA--EYTCPNCYITEVERGERKPLP 1145
K + ++++ CD+C+ W H C G + EY CP C TE PL
Sbjct: 14 KTPYDESKFYIGCDRCQNWYHGRCV---GILQSEAELIDEYVCPQCQSTEDAXTVLTPLT 70
Query: 1146 QSAVLGAKDLPRTI 1159
+ G K + R++
Sbjct: 71 EKDYEGLKRVLRSL 84
>pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-Syn) From E.
Coli
Length = 431
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 796 LPSSVSESCKSY---DTGDASGGMISKTPAVVETSEDIQPSLKRMKIEPSSQSLAPENKS 852
LP + S+ K DTG +GGM + +PA V T + Q +++R+ I P+ + +A E +
Sbjct: 209 LPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERI-IWPTVKGMAAEGNT 267
Query: 853 ST--VSASAIAETQVSQDVLQ-----QDYQNVKIGMPVKSEFMEV 890
T + A + + Q + V++ D + I + +KS+ +E+
Sbjct: 268 YTGFLYAGLMIDKQGNPKVIEFNCRFGDLETQPIMLRMKSDLVEL 312
>pdb|3HRD|B Chain B, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|F Chain F, Crystal Structure Of Nicotinate Dehydrogenase
Length = 330
Score = 33.9 bits (76), Expect = 0.89, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 841 PSSQSLAPENKSST-----VSASAIAETQVSQDVLQQDYQNV----KIGMPVKSEFMEVK 891
P++ LAPEN S A+ IAE +V + + D V +G P+ +E +
Sbjct: 164 PNTTGLAPENMSGIPFEVYSYATTIAEVEVDTETGEVDVLKVVSAHDVGTPINRSMVEGQ 223
Query: 892 MEVPVSSGQG 901
+E V+ GQG
Sbjct: 224 IEGGVTMGQG 233
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1100 CDKCEAWQHQICALFN---GRRNDGGQAEYTCPNCYI 1133
CD+CE W H C + GR + +Y CPNC I
Sbjct: 33 CDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 1088 KNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQA--EYTCPNCYITEVERGERKPLP 1145
K + ++++ CD+C+ W H C G + EY CP C TE PL
Sbjct: 14 KTPYDESKFYIGCDRCQNWYHGRCV---GILQSEAELIDEYVCPQCQSTEDAMTVLTPLT 70
Query: 1146 QSAVLGAKDLPRTI 1159
+ G K + R++
Sbjct: 71 EKDYEGLKRVLRSL 84
>pdb|1L3E|B Chain B, Nmr Structures Of The Hif-1alpha CtadP300 CH1 COMPLEX
pdb|1P4Q|B Chain B, Solution Structure Of The Cited2 Transactivation Domain In
Complex With The P300 Ch1 Domain
Length = 101
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 724 KCQDVNCITVQKLWRHMDNCTSSQ-CPYPRCXXXXXXXXXXXXCRDPSCPVCVPVKN 779
+C +C T++ + HM +C S + C C C CPVC+P+KN
Sbjct: 41 QCNLPHCRTMKNVLNHMTHCQSGKSCQVAHCASSRQIISHWKNCTRHDCPVCLPLKN 97
>pdb|1WE9|A Chain A, Solution Structure Of Phd Domain In Nucleic Acid Binding
Protein-like Np_197993
Length = 64
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 1093 TEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNC 1131
+E+W+ CD CE W H C R + + +Y CP+C
Sbjct: 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIK-QYKCPSC 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,926,074
Number of Sequences: 62578
Number of extensions: 2005352
Number of successful extensions: 3859
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3807
Number of HSP's gapped (non-prelim): 50
length of query: 1768
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1655
effective length of database: 7,902,023
effective search space: 13077848065
effective search space used: 13077848065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)