Query 000262
Match_columns 1768
No_of_seqs 320 out of 370
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 21:21:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000262.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_0-3//hhsearch_pdb/000262hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3biy_A Histone acetyltransfera 1.0 1 1 941.1 26.6 358 1149-1591 1-380 (380)
2 3p57_P Histone acetyltransfera 1.0 1 1 225.7 11.9 106 1654-1763 7-112 (112)
3 3t92_A Histone acetyltransfera 1.0 1 1 215.4 9.7 110 1650-1759 4-121 (121)
4 1l3e_B P300 protein; protein-p 1.0 1 1 176.1 -1.5 86 696-782 8-100 (101)
5 3t92_A Histone acetyltransfera 1.0 1 1 126.7 4.9 89 697-787 5-97 (121)
6 1tot_A CREB-binding protein; z 1.0 1 1 88.6 1.1 51 1587-1642 1-51 (52)
7 3p57_P Histone acetyltransfera 1.0 1 1 82.1 6.8 87 698-786 5-95 (112)
8 1l3e_B P300 protein; protein-p 1.0 1 1 79.8 6.5 77 1658-1737 15-99 (101)
9 2dip_A Zinc finger SWIM domain 1.0 1 1 70.1 2.8 48 1590-1639 29-76 (98)
10 2e5r_A Dystrobrevin alpha; ZZ 1.0 1 1 69.2 2.6 45 1593-1637 12-59 (63)
No 1
>3biy_A Histone acetyltransferase P300; P300 HAT, bisubstrate inhibitor, protein-inhibitor complex; HET: 01K; 1.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=941.08 Aligned_cols=358 Identities=42% Similarity=0.748 Sum_probs=308.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHC-CCCCCC
Q ss_conf 3477779987014899999999999999999988278777888986469999831311346558899863205-999843
Q 000262 1149 VLGAKDLPRTILSDHIEHRLFRRLKQERQERARIQGKSYDEVPGAEALVIRVVSSVDKKLEVKQRFLEIFQEE-NYPTEF 1227 (1768)
Q Consensus 1149 ~~~AkdLp~t~LS~fiE~rln~~L~~~~~~~a~~~g~~~~ev~~a~~l~VRvVss~~k~~~Vk~~f~~~f~e~-~yp~~f 1227 (1768)
.|+|+|||+|+||+|||+|||++|+++ +.++++.|+||||++++|+++|+++|.++|.+. +||++|
T Consensus 1 ~f~a~~Lp~t~LS~~lE~rln~~L~~~-------------~~~~~~~v~IRvvss~~k~~ev~~~~~~~f~~~~~~~~~f 67 (380)
T 3biy_A 1 KFSAKRLPSTRLGTFLENRVNDFLRRQ-------------NHPESGEVTVRVVHASDKTVEVKPGMKARFVDSGEMAESF 67 (380)
T ss_dssp CCCSTTSCCCHHHHHHHHHHHHHHHHH-------------TCTTCCCEEEEEEEEEEEEEECCTTHHHHTTTTTSSCSEE
T ss_pred CCCHHHCCCCHHHHHHHHHHHHHHHHH-------------CCCCCCCEEEEEEEEECCEEECCHHHHHHHCCCCCCCCCC
T ss_conf 988033888737899999999999862-------------5565575579999742230121611787613213577345
Q ss_pred CCEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 64047999999858868999999976327889999974299982355444444311123310356999999999999998
Q 000262 1228 PYKSKVVLLFQKIEGVEVCLFGMYVQEFGSECQFPNQRRVYLSYLDSVKYFRPEIKAVTGEALRTFVYHEILIGYLEYCK 1307 (1768)
Q Consensus 1228 ~YrsK~I~vFQkidGvDVlfF~M~VqEYg~~c~~pn~r~vyIsYLDSV~yf~P~~~~~~G~~lRt~VYheILl~Yl~y~k 1307 (1768)
|||+|||+|||+|||||||||+|||||||++||.||+|||||+|||||+||+|+ .+||+||||||||||+|||
T Consensus 68 ~YrsK~I~vFQ~idgvDV~fF~m~vqEy~~~c~~pn~r~vyI~YLDSV~yf~p~-------~~Rt~vY~eill~Yl~y~k 140 (380)
T 3biy_A 68 PYRTKALFAFEEIDGVDLCFFGMHVQEYGSDCPPPNQRRVYISYLDSVHFFRPK-------CLRTAVYHEILIGYLEYVK 140 (380)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEECTTSCTTSTTEEEEEEEEECSCCSSG-------GGHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCC-------HHHHHHHHHHHHHHHHHHH
T ss_conf 513679999997589379999999471155678988726999871442235730-------2678999999999999998
Q ss_pred HCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 60985789971799999971461699999999915799999999999885290953010255530044644333676646
Q 000262 1308 LRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLAMLRKAAKENIVVDLTNLYDHFFVSTGECRAKVTAARL 1387 (1768)
Q Consensus 1308 ~~GF~~ahIWAcPP~~GDDYIF~~HP~~Qk~p~~~~L~~WY~~mL~ka~~egIV~~~~n~yd~~f~~~~~~~~~~~~~~L 1387 (1768)
++||++||||||||.+||||||||||++|++|++++|++||++||++|+++|||.+|+|||++.+.. .+.+|++|
T Consensus 141 ~~Gf~~~hiWAcPP~~GDDYIF~~HP~~Qk~p~~~rL~~WY~~mL~kg~~~giv~~~~~~~~~~~~~-----~~~~~~~l 215 (380)
T 3biy_A 141 KLGYTTGHIWACPPSEGDDYIFHCHPPDQKIPKPKRLQEWYKKMLDKAVSERIVHDYKDIFKQATED-----RLTSAKEL 215 (380)
T ss_dssp HHTCCEEEEECCCCCTTCCSSSSSCCTTCCCCCHHHHHHHHHHHHHHHHHTTSCCEEEEHHHHHHHH-----TCCCGGGS
T ss_pred HCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCC-----CCCCHHHC
T ss_conf 3797368887069989984588407410678880799999999999898759354056686531455-----55887558
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-----------CCC---CHHHHHHHHHHCCC-------CCCCCCCCHHHH
Q ss_conf 854599961799999999982000001134-----------664---02343898774299-------888888523379
Q 000262 1388 PYFDGDYWPGAAEDLIYQIRQDEDGKKQNK-----------GIT---KKTITKRALKASGQ-------TDLSGNASKDLL 1446 (1768)
Q Consensus 1388 PyF~gd~Wp~~~E~ii~~l~~e~~~~k~~k-----------~~~---kk~~~kr~~k~~g~-------~~~~~~~~kd~~ 1446 (1768)
|||+|||||+++|++|++|++|++++|..+ |.. ||...|++.++.+. .....+.+. .
T Consensus 216 PyF~gd~W~~~~e~~i~el~~e~~~rk~~~~~~~~~~~~~~~~~k~~kkk~~kk~~~~k~~~~~~~~k~~~~~~~~~--~ 293 (380)
T 3biy_A 216 PYFEGDFWPNVLEESIKELEQEEEERKREENTSNESTDVTKGDSKNAKKKNNKKTSKNKSSLSRGNKKKPGMPNVSN--D 293 (380)
T ss_dssp CCCTTCHHHHHHHHHHCC--------------------------------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCH--H
T ss_conf 84178756799999999998877764310012222244545404665530144443343202232001468876424--8
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99986200056843204543254564353200138503650012345442000244688740112237998964443233
Q 000262 1447 LMHKLGETICPMKEDFIMVHLQHACNHCCILMVSGSRHVCEQCTKLNKNFQLCDKCFEAEKKREDRERHPVNSREVHILE 1526 (1768)
Q Consensus 1447 lm~klg~~i~~~KedF~v~~lq~~C~~C~~~iv~~~rw~c~~c~~~~k~f~lC~~Cy~~e~~~~~~~~hp~~~~~~h~L~ 1526 (1768)
||+||+++|++||||||||+|+... . .+.|
T Consensus 294 l~~kl~~~~~~~ke~ff~i~L~~~~---------------------------------------------~----~~~l- 323 (380)
T 3biy_A 294 LSQKLYATMEKHKEVFFVIRLIAGP---------------------------------------------A----ANSL- 323 (380)
T ss_dssp -CHHHHHHHHHTGGGEEEEESSCGG---------------------------------------------G----GTSC-
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCC---------------------------------------------C----CCCC-
T ss_conf 9999999987304533999954776---------------------------------------------5----5678-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHCCCCCCCC
Q ss_conf 45568999998878733347345527999987430898843124402321367876108998733
Q 000262 1527 EVPVTDVPADTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAF 1591 (1768)
Q Consensus 1527 ~v~v~~vp~~t~D~D~~l~seffdtR~aFL~lcq~nHyQFDtLRRAKhSSMMiLyhLHn~~~~~f 1591 (1768)
| .+.|+|++|+|+|||+|++||++||+|||||||||||||||||||||||||++|+|
T Consensus 324 -------p-~~~D~D~~~~~e~~d~R~~FL~~c~~~h~qF~tLRRAK~SSm~~L~~Lhn~~~~~~ 380 (380)
T 3biy_A 324 -------P-PIVDPDPLIPCDLMDGRDAFLTLARDRHLEFSSLRRAQWSTGCMLVELHTQSQDRF 380 (380)
T ss_dssp -------C-CCCCCSCCBCCGGGSSSHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred -------C-CCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf -------9-98998754204200689999999998387757156777769999999648888989
No 2
>3p57_P Histone acetyltransferase P300; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3io2_A
Probab=1.00 E-value=1 Score=225.73 Aligned_cols=106 Identities=39% Similarity=0.813 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 99999999999988830499999999015979999996310143268998527999999999984059899898884438
Q 000262 1654 LRVLQLRKMLDLLVHASQCRSPHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDL 1733 (1768)
Q Consensus 1654 ~r~~qL~~~l~~L~HA~~C~~a~C~~~~C~kmK~li~H~~~C~~R~~gGC~~Ckrmw~Ll~~HAk~C~~~~C~VP~C~~l 1733 (1768)
.|.++|+++|++|+||++|++++|.+++|.+||+||+|+++|++|++|||++|++||+||+|||++|++++|+||+|++|
T Consensus 7 ~r~~~iq~~l~~L~HA~~C~~~~C~~~~C~~mK~ll~H~~~C~~r~~~gC~~Ck~~~~Ll~~HAk~C~~~~C~VP~C~~i 86 (112)
T 3p57_P 7 SRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALCCYHAKHCQENKCPVPFCLNI 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCCCTTHHHHHHHHTCTTCC-------CCCHHHHHHHHHHHHTTCCSTTCCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 89999999999999884198999997055999999999988568799998200999999999998739899999867899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999987479999999999999989987
Q 000262 1734 KEHLRRLQQQSDTRRRQAVMEMMRQRAAEV 1763 (1768)
Q Consensus 1734 K~~~~~~q~q~d~rrR~~v~~~~R~r~~~~ 1763 (1768)
|+++++++.| +|+.+.+|||+|||.|
T Consensus 87 K~~~~q~q~q----~r~~~~~~~rrr~a~~ 112 (112)
T 3p57_P 87 KQKLRQQQLQ----HRLQQAQMLRRRMASM 112 (112)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHCC
T ss_conf 9999999888----9999999999988639
No 3
>3t92_A Histone acetyltransferase P300 TAZ2-ccaat/enhance protein epsilon; TAZ2 domain, zinc finger, transcription, 300/CBP, C/EBP PROT transferase; HET: TCE TAM; 1.50A {Homo sapiens} PDB: 2k8f_A 2ka6_A 2kje_A 1f81_A
Probab=1.00 E-value=1 Score=215.40 Aligned_cols=110 Identities=33% Similarity=0.754 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999998883049999999901597999999631014326899852799999999998405989989888
Q 000262 1650 EARQLRVLQLRKMLDLLVHASQCRSPHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQLHARACKESECHVPR 1729 (1768)
Q Consensus 1650 ~arq~r~~qL~~~l~~L~HA~~C~~a~C~~~~C~kmK~li~H~~~C~~R~~gGC~~Ckrmw~Ll~~HAk~C~~~~C~VP~ 1729 (1768)
+.+..|.++|+++|++|+||+.|++++|.+|+|.+||.||+|+..|+.|..+||++|+++|+||++||++|++.+|+|||
T Consensus 4 ~~~e~R~~~iq~~l~~L~HA~~C~~~~C~~p~C~~mK~ll~H~~~C~~r~~~~c~~C~~~~~Ll~~Hak~C~~~~C~VP~ 83 (121)
T 3t92_A 4 SPGDSRRLSIQRAIQSLVHAAQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAAYHAKHCQENKCPVPF 83 (121)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHHCSSTTTTTCHHHHHHHHHHHHHHTTCCCTTCCSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 56999999999999999977409378999704389999999999806899999974499999999999767999999986
Q ss_pred CHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q ss_conf 44389999999874--------7999999999999998
Q 000262 1730 CRDLKEHLRRLQQQ--------SDTRRRQAVMEMMRQR 1759 (1768)
Q Consensus 1730 C~~lK~~~~~~q~q--------~d~rrR~~v~~~~R~r 1759 (1768)
|++||++++++|++ .|++|+++|.++++++
T Consensus 84 C~~iK~~~~~qq~q~~~~~~~~~~~~~~~l~~~~~~~~ 121 (121)
T 3t92_A 84 CLNIKQKLRQQQLEASIDLSAYIESGEEQLLSDLFAVK 121 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 58899999999999988887878999999999998239
No 4
>1l3e_B P300 protein; protein-protein complex, transcription; NMR {Homo sapiens} SCOP: g.53.1.1 PDB: 1p4q_B 1r8u_B 2ka4_A 1l8c_A 1u2n_A 1liq_A
Probab=1.00 E-value=1 Score=176.11 Aligned_cols=86 Identities=33% Similarity=0.720 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHCHHHHHHHCCCCCCCC------CCCCCCCCHHHHHHHHCCCCCCC-CCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 660356754100113332115258998------88778780669999850012699-99999875012789998403699
Q 000262 696 GNRDRQFRNQQRWLLFLRHARRCAAPE------GKCQDVNCITVQKLWRHMDNCTS-SQCPYPRCHHSKILIHHHKHCRD 768 (1768)
Q Consensus 696 ~~~e~~~~~qqrwLl~L~HA~~C~~~~------g~C~~~~C~~~k~lL~H~~~C~~-~~C~~~~C~ssr~ll~H~k~C~~ 768 (1768)
.++++... .|++|+||+||++|..++ +.|.+++|.+||+||.||.+|++ ++|+|+||.+||+||+||++|++
T Consensus 8 ~dp~~~k~-iqqqL~lL~HA~kC~~~e~~~g~~~~C~lp~C~~mK~ll~Hm~~C~~g~~C~~~~C~sSr~ii~H~k~C~~ 86 (101)
T 1l3e_B 8 ADPEKRKL-IQQQLVLLLHAHKCQRREQANGEVRQCNLPHCRTMKNVLNHMTHCQSGKSCQVAHCASSRQIISHWKNCTR 86 (101)
T ss_dssp CCGGGHHH-HHHHHHHHHHHHHHHHHHTTTSSCCCCSCHHHHHHHHHHHHHTTCCSCSSSSCHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99799999-99999999999884882026886888899763899999999987638899999988879999999986899
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 99997325638999
Q 000262 769 PSCPVCVPVKNYLQ 782 (1768)
Q Consensus 769 ~~CpvC~PVr~~v~ 782 (1768)
.+||||.|||.+.+
T Consensus 87 ~~CpVC~pvk~~~~ 100 (101)
T 1l3e_B 87 HDCPVCLPLKNAGD 100 (101)
T ss_dssp SCCTTHHHHHCCSC
T ss_pred CCCCCCHHHHHHHH
T ss_conf 99986788996430
No 5
>3t92_A Histone acetyltransferase P300 TAZ2-ccaat/enhance protein epsilon; TAZ2 domain, zinc finger, transcription, 300/CBP, C/EBP PROT transferase; HET: TCE TAM; 1.50A {Homo sapiens} PDB: 2k8f_A 2ka6_A 2kje_A 1f81_A
Probab=1.00 E-value=1 Score=126.73 Aligned_cols=89 Identities=29% Similarity=0.582 Sum_probs=80.6
Q ss_pred CHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC-CCCCCCCCCCHHHHH-HHHHCCCCCCCCC-
Q ss_conf 6035675410011333211525899888778780669999850012699-999998750127899-9840369999997-
Q 000262 697 NRDRQFRNQQRWLLFLRHARRCAAPEGKCQDVNCITVQKLWRHMDNCTS-SQCPYPRCHHSKILI-HHHKHCRDPSCPV- 773 (1768)
Q Consensus 697 ~~e~~~~~qqrwLl~L~HA~~C~~~~g~C~~~~C~~~k~lL~H~~~C~~-~~C~~~~C~ssr~ll-~H~k~C~~~~Cpv- 773 (1768)
..|......++||.+|+||.+|..+ .|..|+|..||.||.|+..|+. +.|.+++|..++.|| .||+.|.+.+|||
T Consensus 5 ~~e~R~~~iq~~l~~L~HA~~C~~~--~C~~p~C~~mK~ll~H~~~C~~r~~~~c~~C~~~~~Ll~~Hak~C~~~~C~VP 82 (121)
T 3t92_A 5 PGDSRRLSIQRAIQSLVHAAQCRNA--NCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAAYHAKHCQENKCPVP 82 (121)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCCCT--TCCCHHHHHHHHHHHHHHHCSSTTTTTCHHHHHHHHHHHHHHTTCCCTTCCST
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 6999999999999999977409378--99970438999999999980689999997449999999999976799999998
Q ss_pred -CHHHHHHHHHHHHH
Q ss_conf -32563899999998
Q 000262 774 -CVPVKNYLQQQKER 787 (1768)
Q Consensus 774 -C~PVr~~v~k~~qq 787 (1768)
|.|+|..++++.++
T Consensus 83 ~C~~iK~~~~~qq~q 97 (121)
T 3t92_A 83 FCLNIKQKLRQQQLE 97 (121)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 658899999999999
No 6
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=1.00 E-value=1 Score=88.56 Aligned_cols=51 Identities=37% Similarity=0.876 Sum_probs=43.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 98733311433436777789321167899732112110489999999876899976
Q 000262 1587 TAPAFVTTCNICHLDIETGQGWRCEVCPDYDVCNACYQKDGGIDHPHKLTNHPSTA 1642 (1768)
Q Consensus 1587 ~~~~f~~TCn~C~~~I~t~~~whC~vC~DfDLC~~CY~k~g~~~H~Hkl~~~p~~~ 1642 (1768)
+.++|.++|+.|..+| |.||||.+|+|||||.+||.+. .|.|+|.+++...
T Consensus 1 ~~~~~~~~Cd~C~~~i--g~R~~C~~C~dyDLC~~C~~~~---~H~H~m~~~~~~l 51 (52)
T 1tot_A 1 GQDRFVYTCNECKHHV--ETRWHCTVCEDYDLCINCYNTK---SHTHKMVKWGLGL 51 (52)
T ss_dssp CBCSSCEEETTTTEEE--SSEEEESSSSSCEECHHHHHHH---CCCSSEEEECSSC
T ss_pred CCCCCEEECCCCCCCC--CCEEECCCCCCCHHHHHHHHCC---CCCCCEEEECCCC
T ss_conf 9983788998988988--4547848999853499998379---9888648836888
No 7
>3p57_P Histone acetyltransferase P300; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3io2_A
Probab=1.00 E-value=1 Score=82.13 Aligned_cols=87 Identities=30% Similarity=0.601 Sum_probs=77.1
Q ss_pred HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC-CCCCCCCCCCHHHH-HHHHHCCCCCCCCC--
Q ss_conf 035675410011333211525899888778780669999850012699-99999875012789-99840369999997--
Q 000262 698 RDRQFRNQQRWLLFLRHARRCAAPEGKCQDVNCITVQKLWRHMDNCTS-SQCPYPRCHHSKIL-IHHHKHCRDPSCPV-- 773 (1768)
Q Consensus 698 ~e~~~~~qqrwLl~L~HA~~C~~~~g~C~~~~C~~~k~lL~H~~~C~~-~~C~~~~C~ssr~l-l~H~k~C~~~~Cpv-- 773 (1768)
.|......+++|.+|.||..|.. ..|..+.|..||.|+.|+..|+. .....++|...-.| ..|++.|.+.+|+|
T Consensus 5 ~~~r~~~iq~~l~~L~HA~~C~~--~~C~~~~C~~mK~ll~H~~~C~~r~~~gC~~Ck~~~~Ll~~HAk~C~~~~C~VP~ 82 (112)
T 3p57_P 5 GDSRRLSIQRCIQSLVHACQCRN--ANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALCCYHAKHCQENKCPVPF 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC--TTCCCTTHHHHHHHHTCTTCC-------CCCHHHHHHHHHHHHTTCCSTTCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77899999999999998841989--9999705599999999998856879999820099999999999873989999986
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 3256389999999
Q 000262 774 CVPVKNYLQQQKE 786 (1768)
Q Consensus 774 C~PVr~~v~k~~q 786 (1768)
|..+|..+++...
T Consensus 83 C~~iK~~~~q~q~ 95 (112)
T 3p57_P 83 CLNIKQKLRQQQL 95 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 7899999999988
No 8
>1l3e_B P300 protein; protein-protein complex, transcription; NMR {Homo sapiens} SCOP: g.53.1.1 PDB: 1p4q_B 1r8u_B 2ka4_A 1l8c_A 1u2n_A 1liq_A
Probab=1.00 E-value=1 Score=79.82 Aligned_cols=77 Identities=29% Similarity=0.657 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHCCCCC--------CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999888304999--------9999901597999999631014326899852799999999998405989989888
Q 000262 1658 QLRKMLDLLVHASQCRS--------PHCQYPNCRKVKGLFRHGIQCKTRASGGCVLCKKMWYLLQLHARACKESECHVPR 1729 (1768)
Q Consensus 1658 qL~~~l~~L~HA~~C~~--------a~C~~~~C~kmK~li~H~~~C~~R~~gGC~~Ckrmw~Ll~~HAk~C~~~~C~VP~ 1729 (1768)
.|++-|.+|.||..|.. +.|..+.|..||.|+.|...|+....-..++|.-.++|+ .|.+.|.+.+|+|
T Consensus 15 ~iqqqL~lL~HA~kC~~~e~~~g~~~~C~lp~C~~mK~ll~Hm~~C~~g~~C~~~~C~sSr~ii-~H~k~C~~~~CpV-- 91 (101)
T 1l3e_B 15 LIQQQLVLLLHAHKCQRREQANGEVRQCNLPHCRTMKNVLNHMTHCQSGKSCQVAHCASSRQII-SHWKNCTRHDCPV-- 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSCCCCSCHHHHHHHHHHHHHTTCCSCSSSSCHHHHHHHHHH-HHHHHCCSSCCTT--
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH-HHHHHCCCCCCCC--
T ss_conf 9999999999998848820268868888997638999999999876388999999888799999-9998689999986--
Q ss_pred CHHHHHHH
Q ss_conf 44389999
Q 000262 1730 CRDLKEHL 1737 (1768)
Q Consensus 1730 C~~lK~~~ 1737 (1768)
|..+|+.+
T Consensus 92 C~pvk~~~ 99 (101)
T 1l3e_B 92 CLPLKNAG 99 (101)
T ss_dssp HHHHHCCS
T ss_pred CHHHHHHH
T ss_conf 78899643
No 9
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=1.00 E-value=1 Score=70.14 Aligned_cols=48 Identities=23% Similarity=0.571 Sum_probs=38.4
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 33311433436777789321167899732112110489999999876899
Q 000262 1590 AFVTTCNICHLDIETGQGWRCEVCPDYDVCNACYQKDGGIDHPHKLTNHP 1639 (1768)
Q Consensus 1590 ~f~~TCn~C~~~I~t~~~whC~vC~DfDLC~~CY~k~g~~~H~Hkl~~~p 1639 (1768)
...++|+.|......|.||+|.+|+|||||..||.+ +.| -.|.+..+.
T Consensus 29 H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~-~~H-~~H~f~~i~ 76 (98)
T 2dip_A 29 HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS-YCH-LSHTFTFRE 76 (98)
T ss_dssp CCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT-TSG-GGSCEEECC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHCC-CCC-CCCCEEEEC
T ss_conf 698798698888730675788879993078897746-987-889816816
No 10
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=69.17 Aligned_cols=45 Identities=24% Similarity=0.815 Sum_probs=35.7
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCC---CCCCCCCCCC
Q ss_conf 11433436777789321167899732112110489---9999998768
Q 000262 1593 TTCNICHLDIETGQGWRCEVCPDYDVCNACYQKDG---GIDHPHKLTN 1637 (1768)
Q Consensus 1593 ~TCn~C~~~I~t~~~whC~vC~DfDLC~~CY~k~g---~~~H~Hkl~~ 1637 (1768)
++|+.|..+...|.||+|.+|+|||||..||.+.. .|.-.|+|..
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~ 59 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKE 59 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEE
T ss_pred CCCCCCCCCCEECCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 899299886263523883679984147888868776799999878899
Done!