BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000264
(1764 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6WKZ8|UBR2_MOUSE E3 ubiquitin-protein ligase UBR2 OS=Mus musculus GN=Ubr2 PE=1 SV=2
Length = 1755
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 141/516 (27%), Positives = 233/516 (45%), Gaps = 82/516 (15%)
Query: 682 ITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAEN-PLSAVSLDFFGH 740
I Y VS + VS+H+P+ RLL+ + + + SE A E PLS +S
Sbjct: 599 IRYCVSQEKVSIHLPISRLLAGL--------HVLLSKSEVAYKFPELLPLSELS------ 644
Query: 741 ILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELD 800
++EHPLR V CAQVHAGMWRRNG + ++ +Y V+ + + D
Sbjct: 645 ----------PPMLIEHPLRCLVLCAQVHAGMWRRNGFSLVNQIYYYHNVKCRREMFDKD 694
Query: 801 LFLLQCCAALAPADLYVNRIIERFGLSNYLS-----------LNLERPSEYEPILVQEML 849
+ +LQ ++ + ++ ++ RF L S + + + L++EML
Sbjct: 695 IVMLQTGVSMMDPNHFLMIMLSRFELYQLFSTPDYGKRFSSEVTHKDVVQQNNTLIEEML 754
Query: 850 TLIIQILQERRFCGL---TTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEIL 906
LII ++ ER G+ + +KRE++H+L+I HS+LVKSLP D +K ++ ++
Sbjct: 755 YLIIMLVGERFNPGVGQVAATDEIKREIIHQLSIKPMAHSELVKSLPEDENKETGMESVI 814
Query: 907 DAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSAL-TAQL 965
++VA + P +GMY L+ KE ++Y +S + AEE + + TA
Sbjct: 815 ESVAHFKKPGLTGRGMYELKPECAKEFNLYFYHFSRAEQSKAEEAQRKLKRENKEDTALP 874
Query: 966 PRWTKIYYPL-ESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALA 1024
P + PL S+ I C V+L ++ +L +AV S + +L LHL+ +A
Sbjct: 875 PPALPPFCPLFASLVNILQCDVMLYIMGTILQWAVEHHGSAWSES---MLQRVLHLIGMA 931
Query: 1025 LDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGA 1084
L Q++K ++ + G F +++I++ + S+L++L L
Sbjct: 932 L----QEEKHHLENA-VEGHVQTFTF-TQKISKPGDAPHNSPSILAMLETLQNAPS---- 981
Query: 1085 DNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSAS 1144
LEA +I LLK F I + S S P + G+
Sbjct: 982 ---LEAHK----DMIRWLLKMFNAIKK-------------IRECSSSSPVAEAEGTIMEE 1021
Query: 1145 DS-------EKRKAK-ARERQAAILEKMKAEQFKFL 1172
S KRKA+ AR R+ I+ +M Q F+
Sbjct: 1022 SSRDKDKAERKRKAEIARLRREKIMAQMSEMQRHFI 1057
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 93 LQWLMFEREPEKVLRKLSKIGQRG-VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGN 151
++W + +P KL + + +CG V+ + Y CR C DPTC +C+ CF
Sbjct: 73 MEWYICAEDPALGFPKLEQANKPSHLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSI 132
Query: 152 HKEHDYSIIYTGGGCCDCGDVT-AWKREGFCSRHK 185
H++H Y + +GGG T AWK +C +HK
Sbjct: 133 HRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHK 167
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1425 GIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHI-VDPDQGEFLCPVCRQLANSVL 1483
G H SCGH +H C RY S++ + RR H D + GEFLCP+C L+N+V+
Sbjct: 1162 GTHTGSCGHVMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYDVENGEFLCPLCECLSNTVI 1221
Query: 1484 PAL 1486
P L
Sbjct: 1222 PLL 1224
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 297 LLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTP 356
LL+ L + +F FAK + + R+ +D ++ ++ SVQ FT PTL
Sbjct: 378 LLMDLKYKKLFALRFAKNY--------RQLQRDFMEDDHERAVSVTALSVQFFTAPTLAR 429
Query: 357 RLVKEMNLLEMLLGCLREIFDSCAGDDSC--LQVAKWANL----YETTNRVIGDIRFVMS 410
L+ E NL+ ++ ++ D D+ Q ++ L + +I D+++V+
Sbjct: 430 MLLTEENLMTVI---IKAFMDHLKHRDAQGRFQFERYTALQAFKFRRVQSLILDLKYVLI 486
Query: 411 HAAV--SKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEY---MHLPLVLDH 465
S + L A+++LL +QGM+P R+ G HI E E+ L + L H
Sbjct: 487 SKPTEWSDELRQKFLQGFDAFLELLKCMQGMDPITRQVGQHIEMEPEWEAAFTLQMKLTH 546
Query: 466 SIANIQ 471
I+ +Q
Sbjct: 547 VISMVQ 552
>sp|Q8IWV8|UBR2_HUMAN E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens GN=UBR2 PE=1 SV=1
Length = 1755
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 173/361 (47%), Gaps = 44/361 (12%)
Query: 682 ITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAEN-PLSAVSLDFFGH 740
I Y VS + VS+H+P+ RLL+ + + + SE A E PLS +S
Sbjct: 599 IRYCVSQEKVSIHLPVSRLLAGL--------HVLLSKSEVAYKFPELLPLSELS------ 644
Query: 741 ILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELD 800
++EHPLR V CAQVHAGMWRRNG + ++ +Y V+ + + D
Sbjct: 645 ----------PPMLIEHPLRCLVLCAQVHAGMWRRNGFSLVNQIYYYHNVKCRREMFDKD 694
Query: 801 LFLLQCCAALAPADLYVNRIIERFGLSNYLS-----------LNLERPSEYEPILVQEML 849
+ +LQ ++ + ++ ++ RF L S + + + L++EML
Sbjct: 695 VVMLQTGVSMMDPNHFLMIMLSRFELYQIFSTPDYGKRFSSEITHKDVVQQNNTLIEEML 754
Query: 850 TLIIQILQERRFCGL---TTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEIL 906
LII ++ ER G+ + +KRE++H+L+I HS+LVKSLP D +K ++ ++
Sbjct: 755 YLIIMLVGERFSPGVGQVNATDEIKREIIHQLSIKPMAHSELVKSLPEDENKETGMESVI 814
Query: 907 DAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEE--RYLRFCSVSALTAQ 964
+AVA + P +GMY L+ KE ++Y +S + AEE R L+ +
Sbjct: 815 EAVAHFKKPGLTGRGMYELKPECAKEFNLYFYHFSRAEQSKAEEAQRKLKRQNREDTALP 874
Query: 965 LPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALA 1024
P S+ I V+L ++ +L +AV + S + +L LHL+ +A
Sbjct: 875 PPVLPPFCPLFASLVNILQSDVMLCIMGTILQWAVEHNGYAWSES---MLQRVLHLIGMA 931
Query: 1025 L 1025
L
Sbjct: 932 L 932
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 1425 GIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHI-VDPDQGEFLCPVCRQLANSVL 1483
G H SSCGH +H C RY S++ + RR H D + GEFLCP+C L+N+V+
Sbjct: 1162 GTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYDVENGEFLCPLCECLSNTVI 1221
Query: 1484 PAL 1486
P L
Sbjct: 1222 PLL 1224
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 93 LQWLMFEREPEKVLRKLSKIGQRG-VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGN 151
++W + +P KL + + +CG V+ + Y CR C DPTC +C+ CF
Sbjct: 73 MEWYLCGEDPAFGFPKLEQANKPSHLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSI 132
Query: 152 HKEHDYSIIYTGGGCCDCGDVT-AWKREGFCSRHK 185
H++H Y + +GGG T AWK +C +H+
Sbjct: 133 HRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 295 HELLLK-LLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPT 353
H+L + LL + +K FA F Y +D + + + + ++ SVQ FT PT
Sbjct: 371 HQLFMSSLLMDLKYKKLFAVRFAKNYQQLQRDFMEDDHERAVS----VTALSVQFFTAPT 426
Query: 354 LTPRLVKEMNLLEMLLGCLREIFDSCAGDDSC--LQVAKWANL----YETTNRVIGDIRF 407
L L+ E NL+ ++ ++ D D+ Q ++ L + +I D+++
Sbjct: 427 LARMLITEENLMSII---IKTFMDHLRHRDAQGRFQFERYTALQAFKFRRVQSLILDLKY 483
Query: 408 VMSHAAV--SKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEY---MHLPLV 462
V+ S + L A+++LL +QGM+P R+ G HI E E+ L +
Sbjct: 484 VLISKPTEWSDELRQKFLEGFDAFLELLKCMQGMDPITRQVGQHIEMEPEWEAAFTLQMK 543
Query: 463 LDHSIANIQ 471
L H I+ +Q
Sbjct: 544 LTHVISMMQ 552
>sp|Q8IWV7|UBR1_HUMAN E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens GN=UBR1 PE=1 SV=1
Length = 1749
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 138/592 (23%), Positives = 260/592 (43%), Gaps = 91/592 (15%)
Query: 683 TYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSA-VSLDFFGHI 741
+Y VS VS+H+PL R L+ + + R GA + L VS + F
Sbjct: 597 SYRVSEDLVSIHLPLSRTLAGLHVRLSR-------------LGAVSRLHEFVSFEDFQ-- 641
Query: 742 LGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDL 801
++E+PLR V AQV A MWRRNG + +S +Y+ V+ E+ + D+
Sbjct: 642 ---------VEVLVEYPLRCLVLVAQVVAEMWRRNGLSLISQVFYYQDVKCREEMYDKDI 692
Query: 802 FLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSE----YEPILVQEMLTLIIQILQ 857
+LQ A+L + ++ +++R+ L+ + + + L++EML ++I I+
Sbjct: 693 IMLQIGASLMDPNKFLLLVLQRYELAEAFNKTISTKDQDLIKQYNTLIEEMLQVLIYIVG 752
Query: 858 ERRFCG---LTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSH 914
ER G +T E RE++H L I HS + K+LP + + L+ +++ VA +
Sbjct: 753 ERYVPGVGNVTKEEVTMREIIHLLCIEPMPHSAIAKNLPENENNETGLENVINKVATFKK 812
Query: 915 PSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEE-RYLRFCSVSALTAQLPRWTKIYY 973
P G+Y L+ K+ ++Y +S AE + R + A P +
Sbjct: 813 PGVSGHGVYELKDESLKDFNMYFYHYSKTQHSKAEHMQKKRRKQENKDEALPPPPPPEFC 872
Query: 974 P-LESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKK 1032
P + + C +++ ++R V A+ TD+ + G+L A H+LAL L ++K
Sbjct: 873 PAFSKVINLLNCDIMMYILRTVFERAIDTDSNLWTE---GMLQMAFHILALGL---LEEK 926
Query: 1033 KSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGN 1092
+ ++ P + + + G+ ++ LL L G+ + +G +
Sbjct: 927 QQLQKA-------PEEEVTFDFYHKASRLGSSAMNIQMLLEKLKGIPQLEGQKD------ 973
Query: 1093 CNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHL--SQSLPRDDTSGSFSASDSEKRK 1150
+I +L+ F + +L++ + IV+ S+S+ D+ + ++ +++
Sbjct: 974 -----MITWILQMFDTVK-----RLREKSCLIVATTSGSESIKNDEITHDKEKAERKRKA 1023
Query: 1151 AKARERQAAILEKMKAEQFKFLSS---ISSNIEDAP---------KSAPEVTNYD----- 1193
AR + I+ +M A Q F+ + + N + P +S P V++Y
Sbjct: 1024 EAARLHRQKIMAQMSALQKNFIETHKLMYDNTSEMPGKEDSIMEEESTPAVSDYSRIALG 1083
Query: 1194 ---AEHVSEESVQDVCALCHDPNS-RTPVSYLIL---LQKSRLLSFVDRGSP 1238
V+E+ V C LC + + + ++L +QKS L+ RG P
Sbjct: 1084 PKRGPSVTEKEVL-TCILCQEEQEVKIENNAMVLSACVQKSTALT-QHRGKP 1133
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 93 LQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNH 152
L+W +F +P+ L KL G +CG V+ + + Y CR C DPTC +C+ CFQ+ H
Sbjct: 74 LEWYLFGEDPDICLEKLKHSGAFQLCGRVFKSGETTYSCRDCAIDPTCVLCMDCFQDSVH 133
Query: 153 KEHDYSI-IYTGGGCCDCGDVTAWKREGFCSRHK 185
K H Y + TGGG CDCGD AWK FC H+
Sbjct: 134 KNHRYKMHTSTGGGFCDCGDTEAWKTGPFCVNHE 167
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 1425 GIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLP 1484
G + SCGH +H C +Y +++ +RI + + D + GE+LCP+C+ L N+V+P
Sbjct: 1153 GTYTGSCGHVMHAVCWQKYFEAVQLSSQQRIHVD---LFDLESGEYLCPLCKSLCNTVIP 1209
Query: 1485 ALPWDLQRINEQ 1496
+P Q+IN +
Sbjct: 1210 IIPLQPQKINSE 1221
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 294 LHELLLK-LLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVP 352
LHEL+ E +K FA F+ YY K+ I + D +I ++ SVQ+FTVP
Sbjct: 370 LHELIFSSFFMEMEYKKLFAMEFVKYYKQLQKEYISDDHDRSIS----ITALSVQMFTVP 425
Query: 353 TLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWA-NLYETTNRVIGDIRFVMSH 411
TL L++E N++ ++ L E+ ++ ++ + VI D+++++
Sbjct: 426 TLARHLIEEQNVISVITETLLEVLPEYLDRNNKFNFQGYSQDKLGRVYAVICDLKYILIS 485
Query: 412 AAV--SKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHI 450
++ + L ++++K+LT +QGM +R+ G HI
Sbjct: 486 KPTIWTERLRMQFLEGFRSFLKILTCMQGMEEIRRQVGQHI 526
>sp|Q9VX91|UBR1_DROME E3 ubiquitin-protein ligase UBR1 OS=Drosophila melanogaster GN=UBR1
PE=2 SV=2
Length = 1824
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 166/366 (45%), Gaps = 50/366 (13%)
Query: 682 ITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHI 741
+ YD+S Q VS+H+PL R + I Y A + G + A+S+
Sbjct: 614 LVYDISVQPVSIHLPLSRFFAGI--------YLHLGAHDLTYDGLQTETEALSIKLTPRE 665
Query: 742 LGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDL 801
++E L + AQV AG+WRRNG L +YR VR + L+ D+
Sbjct: 666 ------------IIEPVLCTQAMIAQVGAGLWRRNGYTLLHQLYFYRNVRCRVEMLDRDI 713
Query: 802 FLLQCCAALAPADLYVNRIIERFGL-----SNYLSL----NLERPSEYEPILVQEMLTLI 852
LQ A+L ++ ++ ++ RF NY SL + E + E L L+
Sbjct: 714 ACLQIGASLMESNEFLIHVLNRFNTIPWLQENYWSLLSGNEMNDDIIREASIFDEFLELL 773
Query: 853 IQILQERRFCG---LTTAESLKRELVHRLAIGDATHSQLVKSLPRDLS--KFDQLQEILD 907
I I+ ER G +T + L++E++ L I +HS+L ++LP S + +E+++
Sbjct: 774 IVIIGERWMPGVSMVTEEDRLRKEIIQLLCIKPYSHSELSRALPDGNSGNSDNVFEEVIN 833
Query: 908 AVAMYSHPSGFN-QGMYSLRWSYWKELDIYHPRWSSRDLQVAEE-----RYLRFCSVSAL 961
VA++ P G + +G+Y L+ KE ++Y ++ D AEE R + V
Sbjct: 834 TVAVFKKPVGADSKGVYELKEHLLKEFNMYFYHYTKEDKSKAEELQRERRKAKKQLVCCP 893
Query: 962 TAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAV--FTDNPTDSRAPYGVLLTALH 1019
LP+ T + P+ A I C V L + ++ A+ ++ + T+S L LH
Sbjct: 894 PPMLPKLTPAFTPM---ANILQCPVFLNICSLIMERALNAYSRSFTESH-----LQKVLH 945
Query: 1020 LLALAL 1025
LL A+
Sbjct: 946 LLGYAI 951
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 96 LMFEREPEKVLRKLSKIGQRG-VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKE 154
M P L KL G VCG V+ N + Y CR C DPTC +CV CF+ H+
Sbjct: 86 FMLGDNPSSALEKLRLEGNTATVCGKVFKNGEPTYSCRECGVDPTCVLCVNCFKRSAHRF 145
Query: 155 HDYSIIYTGGGCCDCGDVT-AWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWE 213
H Y + +GGG C AWK++ +C H A + PL K A VL+ + I +
Sbjct: 146 HKYKMSTSGGGGCCDCGDDEAWKKDQYCELHL-ANRKNPLESKILTDA--VLERVEICFG 202
Query: 214 NKLSLAESVGQENPRAS 230
L+ S + P AS
Sbjct: 203 AILAFCVSYLEIEPNAS 219
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 26/198 (13%)
Query: 1425 GIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLP 1484
+H+S CGH +H C Y ++ + + RR + EF CP CR L+N+++P
Sbjct: 1168 ALHISCCGHVMHYSCWLEYFTNEEFKELRRPHRNRAALAQAANVEFQCPYCRTLSNAIIP 1227
Query: 1485 ALPWDLQRINEQPTVSGVGLSLDSSSSFTTREENTSFQL----QQAVSLLQSASNVV--- 1537
L + P+ + L LD SF + +L ++ L S SN++
Sbjct: 1228 VTE-TLPAFSAPPSPNESYLPLD---SFVEIMSTLAIELGNVKDHELTTLPSVSNILRLS 1283
Query: 1538 ----GKADVIESFPLMKN--EIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSL---- 1587
G A S L+KN + A +E + K N + + +P++
Sbjct: 1284 GVVGGLAQFERSVQLIKNPPRLHADYIEGIE--FLKKALLNTMKIQQSHLKDHPAIESIE 1341
Query: 1588 ---IMWDALKYSLMSMEI 1602
I+WD+ Y+L ++EI
Sbjct: 1342 MVPILWDSCSYTLQALEI 1359
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 295 HELLLK-LLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPT 353
H LL+ +L E K A+ F Y V+D I SDD + ++S SVQ+FTVP+
Sbjct: 386 HRLLISGMLMEYDNKMILAQEFSRRYATIVEDFI---SDDHDHAFSIVS-LSVQLFTVPS 441
Query: 354 LTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAK---WANLYETTNRVIGDIRFVMS 410
+ L+ + + LL + + L +K ++ N ++ D+R+++S
Sbjct: 442 IAHHLIAHEGIFDKLLHTFYHVAIEKFIRNKTLHFSKNIASLTFFKRANYILYDLRYLLS 501
Query: 411 HA--AVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEY 456
+S + L +A M++L +QGM R+TG H+ E E+
Sbjct: 502 LKPDVLSNDLRNGFLEGCRALMRVLNVMQGMESMTRQTGQHMDYEPEW 549
>sp|Q5U430|UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 OS=Mus musculus GN=Ubr3 PE=1 SV=3
Length = 1889
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/474 (22%), Positives = 198/474 (41%), Gaps = 66/474 (13%)
Query: 691 VSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGF 750
V+ H+PLHR ++ + KA++ + D + P + +
Sbjct: 628 VTFHLPLHRYYAMFLSKAVK--------CQELDLDSLLPDQEMLMK-------------- 665
Query: 751 SAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAAL 810
+M HPL+I+ A++H+ MW RNG Y + ++ D++LLQ CA+
Sbjct: 666 ---LMIHPLQIQASLAEIHSNMWVRNGLQIKGQAMTYVQSHFCNSMIDPDIYLLQVCASR 722
Query: 811 APADLYVNRIIERFGLSNYLSL-----NLERPSEYEPILVQEMLTLIIQILQERRFCGLT 865
D +++ + ERF + + L++ N+ E+E +++ LT ++ +L R G++
Sbjct: 723 LDPDYFISSVFERFKVVDLLTMASQHHNMVLDVEHERSMLEGALTFLVILLSLRLHLGMS 782
Query: 866 TAESLKRELVHRLAIGDATHSQLVKSLPRD-------LSKFDQLQEILDAVAMYSHP--- 915
+ L+ E+V +L + D THS L+ +P + + + +L AVA + P
Sbjct: 783 DDDILRAEMVAQLCMNDRTHSSLLDLIPENPNPKSGIIPGSYSFESVLSAVADFRAPIFE 842
Query: 916 --SGFNQGMYSLRWSYW-KELD---IYHPRWSSRDLQVAEERYLRFCSVSALTAQLP--- 966
QGMY+ + W +E D + RD+Q A +RY F S P
Sbjct: 843 PGGSMQQGMYTPKAEVWDQEFDPVMVILRTVYRRDVQSAMDRYTAFLKQSGKFPGNPWPP 902
Query: 967 --RWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALA 1024
+ T ++ + + + CK L ++ L Y + D+ S VL L+L+ L
Sbjct: 903 YKKRTSLHPSYKGLMRLLHCK-TLHIVLFTLLYKILMDHQNLSEH---VLCMVLYLIELG 958
Query: 1025 LDVCFQKKKSGDQSCDIGGSTPILD--FASEEIAEGLNNGAG------KQSLLSLLVFLM 1076
L+ ++ +GG D F + + + ++ L +
Sbjct: 959 LEN--SADDDSEEEVSMGGPERCHDSWFPGSNLVSNMRHFINYVRVRVPETAPELKRDPL 1016
Query: 1077 GMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLA-PEIVSHLS 1129
D D+ +G + S++ KKF EI +R ++ Q+ P+I S S
Sbjct: 1017 ASTSSDALDSLQNSGTAQVFSLVAERRKKFQEIINRSNSEANQVVRPKIPSKWS 1070
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCGDVTA 174
+CG VW N +AYRCRTC P ++C CF G+H HD+++ + GG CDCGD
Sbjct: 118 ALCGLVWTANFVAYRCRTCGISPCMSLCAECFHQGDHTGHDFNMFRSQAGGACDCGDSNV 177
Query: 175 WKREGFCSRHK 185
+ GFC RH+
Sbjct: 178 MRESGFCRRHQ 188
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 292 RKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTV 351
+K+ LL +L + +K F K F+ +Y +K + H DT+ + SVQ+F+
Sbjct: 396 QKMVTFLLNMLPDQEYKVAFTKTFVQHYAFIMKTLKKSHESDTMSNR--IVHISVQLFSN 453
Query: 352 PTLTPRLVKEMNLLEMLLGCLREIFDSC------AGDDSCLQVAKWANLYE------TTN 399
L ++ +E LL++++ L + +SC +++ L V N E T
Sbjct: 454 EELARQVTEECQLLDIMVTVLLYMMESCLIKSELQDEENSLHVV--VNCGEALLKNNTYW 511
Query: 400 RVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENE 455
++ D ++SH +V++ E + WM ++F QGMN KRE H+ E++
Sbjct: 512 PLVSDFINILSHQSVAQRFL-EDHGLLVTWMNFVSFFQGMNLNKRELNEHVEFESQ 566
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 1425 GIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLP 1484
G+++ +CGH +H C Y+ SL+ + +G + D+GEF CP+CRQ ANSVLP
Sbjct: 1320 GVYVQTCGHTLHIDCHKSYMESLRNDQ----VLQGFSV---DKGEFTCPLCRQFANSVLP 1372
Query: 1485 ALP 1487
P
Sbjct: 1373 CYP 1375
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 31/205 (15%)
Query: 1043 GSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADN-FLEAGNCNLSSVIES 1101
GS+P L A EI K+S+LSLL+ L +K G N + ++ +I+
Sbjct: 1073 GSSPQLTTAILEI---------KESILSLLIKLH--HKLSGKQNSYYPPWLDDIEVLIQP 1121
Query: 1102 LLKKFAEIDSRCMTKLQQLAPEIVSHLSQSL-------------PRDDTSGSFSASDSEK 1148
+ K+ D + L + S +++ + P+ T+ D E+
Sbjct: 1122 EIPKYNHGDGITAVERILLKAAVQSRMNKRIIEEICRKVTPPVPPKKITAAEKKTLDKEE 1181
Query: 1149 RKAKARERQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCAL 1208
R+ KARERQ +L + + Q F+ + D+P++ + AE E+V D C +
Sbjct: 1182 RRQKARERQQKLLAEFASRQKSFMETAMD--VDSPENDIPMEITTAEPQVSEAVYD-CVI 1238
Query: 1209 CHD--PNSRT-PVSYLILLQKSRLL 1230
C P+S P ++LLQ S +L
Sbjct: 1239 CGQSGPSSEDRPTGLVVLLQASSVL 1263
>sp|O70481|UBR1_MOUSE E3 ubiquitin-protein ligase UBR1 OS=Mus musculus GN=Ubr1 PE=1 SV=2
Length = 1757
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 166/354 (46%), Gaps = 39/354 (11%)
Query: 683 TYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHIL 742
+Y VS VS+H+PL R L+ + + R L A+S L
Sbjct: 597 SYKVSEDLVSIHLPLSRTLAGLHVRLSR-------------------LGAISR------L 631
Query: 743 GGCHPY-GFSAFVM-EHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELD 800
P+ GF V+ E+PLR V AQV A MWRRNG + +S +Y+ V+ E+ + D
Sbjct: 632 HEFVPFDGFQVEVLVEYPLRCLVLVAQVVAEMWRRNGLSLISQVFYYQDVKCREEMYDKD 691
Query: 801 LFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSE----YEPILVQEMLTLIIQIL 856
+ +LQ A++ + ++ +++R+ L++ + + + L++EML ++I I+
Sbjct: 692 IIMLQIGASIMDPNKFLLLVLQRYELTDAFNKTISTKDQDLIKQYNTLIEEMLQVLIYIV 751
Query: 857 QERRFCG---LTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYS 913
ER G +T E + RE+ H L I HS + ++LP + + L+ +++ VA +
Sbjct: 752 GERYVPGVGNVTREEVIMREITHLLCIEPMPHSAIARNLPENENNETGLENVINKVATFK 811
Query: 914 HPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEE-RYLRFCSVSALTAQLPRWTKIY 972
P G+Y L+ K+ ++Y +S AE + R + A P +
Sbjct: 812 KPGVSGHGVYELKDESLKDFNMYFYHYSKTQHSKAEHMQKKRRKQENKDEALPPPPPPEF 871
Query: 973 YP-LESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALAL 1025
P + + +C V++ ++R + AV ++ + G+L A H+LAL L
Sbjct: 872 CPAFSKVVNLLSCDVMMYILRTIFERAVDMESNLWTE---GMLQMAFHILALGL 922
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 93 LQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNH 152
L+W +F +P+ L KL G +CG V+ + + Y CR C DPTC +C+ CFQ+ H
Sbjct: 74 LEWYLFGEDPDICLEKLKHSGAFQLCGKVFKSGETTYSCRDCAIDPTCVLCMDCFQSSVH 133
Query: 153 KEHDYSI-IYTGGGCCDCGDVTAWKREGFCSRHK 185
K H Y + TGGG CDCGD AWK FC H+
Sbjct: 134 KNHRYKMHTSTGGGFCDCGDTEAWKTGPFCVDHE 167
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 1425 GIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLP 1484
G + SCGH +H C +Y +++ +RI + + D + GE+LCP+C+ L N+V+P
Sbjct: 1156 GTYTGSCGHVMHAVCWQKYFEAVQLSSQQRIHVD---LFDLESGEYLCPLCKSLCNTVIP 1212
Query: 1485 ALPWDLQRINEQ 1496
+P Q+IN +
Sbjct: 1213 IIPLQPQKINSE 1224
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 294 LHELLLK-LLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVP 352
LHEL+ E +K FA F+ YY K+ I + + +I ++ SVQ+ TVP
Sbjct: 370 LHELIFSSFFMEMEYKKLFAMEFVKYYKQLQKEYISDDHERSIS----ITALSVQMLTVP 425
Query: 353 TLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWA-NLYETTNRVIGDIRFVMSH 411
TL L++E N++ ++ L E+ ++ ++ + VI D+++++
Sbjct: 426 TLARHLIEEQNVISVITETLLEVLPEYLDRNNKFNFQGYSQDKLGRVYAVICDLKYILIS 485
Query: 412 AAV--SKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHI 450
V ++ + L ++++K+LT +QGM +R+ G HI
Sbjct: 486 KPVIWTERLRAQFLEGFRSFLKILTCMQGMEEIRRQVGQHI 526
>sp|Q6ZT12|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens GN=UBR3 PE=2 SV=2
Length = 1888
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 158/361 (43%), Gaps = 55/361 (15%)
Query: 691 VSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGF 750
V+ H+PLHR ++ + KA++ + D + P + +
Sbjct: 628 VTFHLPLHRYYAMFLSKAVK--------CQELDLDSVLPDQEMLMK-------------- 665
Query: 751 SAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAAL 810
+M HPL+I+ A++H+ MW RNG Y + ++ D++LLQ CA+
Sbjct: 666 ---LMIHPLQIQASLAEIHSNMWVRNGLQIKGQAMTYVQSHFCNSMIDPDIYLLQVCASR 722
Query: 811 APADLYVNRIIERFGLSNYLSL-----NLERPSEYEPILVQEMLTLIIQILQERRFCGLT 865
D +++ + ERF + + L++ N +E+E +++ LT ++ +L R G++
Sbjct: 723 LDPDYFISSVFERFKVVDLLTMASQHQNTVLDAEHERSMLEGALTFLVILLSLRLHLGMS 782
Query: 866 TAESLKRELVHRLAIGDATHSQLVKSLPRD-------LSKFDQLQEILDAVAMYSHP--- 915
E L+ E+V +L + D THS L+ +P + + + +L AVA + P
Sbjct: 783 DDEILRAEMVAQLCMNDRTHSSLLDLIPENPNPKSGIIPGSYSFESVLSAVADFKAPVFE 842
Query: 916 --SGFNQGMYSLRWSYW-KELD---IYHPRWSSRDLQVAEERYLRFCSVSALTAQLP--- 966
QGMY+ + W +E D + RD+Q A +RY F S P
Sbjct: 843 PGGSMQQGMYTPKAEVWDQEFDPVMVILRTVYRRDVQSAMDRYTAFLKQSGKFPGNPWPP 902
Query: 967 --RWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALA 1024
+ T ++ + + + CK L ++ L Y + D+ S VL L+L+ L
Sbjct: 903 YKKRTSLHPSYKGLMRLLHCK-TLHIVLFTLLYKILMDHQNLSEH---VLCMVLYLIELG 958
Query: 1025 L 1025
L
Sbjct: 959 L 959
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 116 GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCGDVTA 174
+CG VW N +AYRCRTC P ++C CF G+H HD+++ + GG CDCGD
Sbjct: 118 ALCGLVWTANFVAYRCRTCGISPCMSLCAECFHQGDHTGHDFNMFRSQAGGACDCGDSNV 177
Query: 175 WKREGFCSRHK 185
+ GFC RH+
Sbjct: 178 MRESGFCKRHQ 188
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 292 RKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTV 351
+K+ LL +L + +K F K F+ +Y +K + H DT+ + SVQ+F+
Sbjct: 396 QKMVTFLLNMLPDQEYKVAFTKTFVQHYAFIMKTLKKSHESDTMSNR--IVHISVQLFSN 453
Query: 352 PTLTPRLVKEMNLLEMLLGCLREIFDSC------AGDDSCLQVAKWANLYE------TTN 399
L ++ +E LL++++ L + +SC +++ L V N E T
Sbjct: 454 EELARQVTEECQLLDIMVTVLLYMMESCLIKSELQDEENSLHVV--VNCGEALLKNNTYW 511
Query: 400 RVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENE 455
++ D ++SH +V+K E + WM ++F QGMN KRE H+ E++
Sbjct: 512 PLVSDFINILSHQSVAKRFL-EDHGLLVTWMNFVSFFQGMNLNKRELNEHVEFESQ 566
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 1425 GIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLP 1484
G+++ +CGH +H C Y+ SL+ + +G + D+GEF CP+CRQ ANSVLP
Sbjct: 1320 GVYVQTCGHTLHIDCHKSYMESLRNDQ----VLQGFSV---DKGEFTCPLCRQFANSVLP 1372
Query: 1485 ALP 1487
P
Sbjct: 1373 CYP 1375
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 31/205 (15%)
Query: 1043 GSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADN-FLEAGNCNLSSVIES 1101
GS P L A EI K+S+LSLL+ L +K G N + ++ +I+
Sbjct: 1073 GSAPQLTTAILEI---------KESILSLLIKLH--HKLSGKQNSYYPPWLDDIEILIQP 1121
Query: 1102 LLKKFAEIDS-----RCMTKL-------QQLAPEIVSHLSQSLP-RDDTSGSFSASDSEK 1148
+ K++ D R + K +++ EI ++ +P + T+ D E+
Sbjct: 1122 EIPKYSHGDGITAVERILLKAASQSRMNKRIIEEICRKVTPPVPPKKVTAAEKKTLDKEE 1181
Query: 1149 RKAKARERQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCAL 1208
R+ KARERQ +L + + Q F+ + D+P++ + AE E+V D C +
Sbjct: 1182 RRQKARERQQKLLAEFASRQKSFMETAMD--VDSPENDIPMEITTAEPQVSEAVYD-CVI 1238
Query: 1209 CHD--PNSRT-PVSYLILLQKSRLL 1230
C P+S P ++LLQ S +L
Sbjct: 1239 CGQSGPSSEDRPTGLVVLLQASSVL 1263
>sp|O13731|UBR11_SCHPO E3 ubiquitin-protein ligase ubr11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubr11 PE=3 SV=1
Length = 2052
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 103/199 (51%), Gaps = 9/199 (4%)
Query: 754 VMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPA 813
+++HPLR+ V AQ+ +W RNG + L + +YR + E + D+ +Q
Sbjct: 894 LLDHPLRVCVLLAQIDCNLWIRNGRSILLTDAFYRQLNNIEVSYDKDILAIQTILMFVDP 953
Query: 814 DLYVNRIIERFGLSNYLSLNL---ERP---SEYEPILVQEMLTLIIQILQER-RFCGLTT 866
+L +N +++RF +++L NL E P +E P ++ +ML L+I ++ ER + +
Sbjct: 954 NLVLNAVVQRFEFTDWL-YNLTYNEHPNYDTERIPAMLCKMLELLIALITEREQILHVDI 1012
Query: 867 AESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQ-GMYSL 925
+ ++ L +L G +S L+ ++ +L + +I + V Y P G + G+YSL
Sbjct: 1013 QDIIRTRLAQQLCFGPLAYSALLSTISSNLVESLSFDKIREEVTSYKAPDGLHDFGVYSL 1072
Query: 926 RWSYWKELDIYHPRWSSRD 944
+ Y+ +D Y+ ++ +
Sbjct: 1073 KDEYYDLVDPYYFHYNKNE 1091
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 101 EPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHD--YS 158
EPE K VCG V+ ++ YRC+ C D TC +C PCF NH+ H+ S
Sbjct: 81 EPECAQELQDKRSGSKVCGHVFRAGEVIYRCKNCGLDNTCVLCAPCFHATNHEGHETHVS 140
Query: 159 IIYTGGGCCDCGDVTAWKREGFCSRH--------KGAEQIQPL 193
I + G CDCGD AW + C H K E++ PL
Sbjct: 141 ISTSYSGICDCGDPEAWNVDLNCKIHNVPDDEEQKKPEEVIPL 183
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 1425 GIHLSSCGHAVHQGCL-DRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVL 1483
G+ +S CGH +H GC + YV+ R + + F+CP+CR L+N +L
Sbjct: 1422 GVFVSGCGHLMHLGCFKNYYVARSMYRNDVTAGLSEYYYKYSTAKFFMCPLCRSLSNVLL 1481
Query: 1484 P 1484
P
Sbjct: 1482 P 1482
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 344 FSVQIFTVPTLTPRLVKEMNLLEML----LGCLRE------IFDSCAGDDSCLQVAKWAN 393
SVQ FT P+L +VK+ + L L L L + +F S +Q+ +
Sbjct: 660 LSVQFFTTPSLAEAVVKDYDFLTNLNATTLSLLTQSNRPSTLFSSDIEYTPTIQLNRQVL 719
Query: 394 LYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIR 451
T + D+ +++ H V K + + + ++ LL QG+ PQ+R H++
Sbjct: 720 KTRRTYNLFSDLGYLLQHPQVKKLVVDDTRYVHQ-YIDLLRVFQGVIPQQRAILSHVQ 776
>sp|P91133|UBR1_CAEEL E3 ubiquitin-protein ligase ubr-1 OS=Caenorhabditis elegans GN=ubr-1
PE=1 SV=2
Length = 2058
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 120/268 (44%), Gaps = 35/268 (13%)
Query: 756 EHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADL 815
E LR+ V CAQ +A +WRRNG + ++ Y + + + D+ ++Q AAL P+
Sbjct: 763 ELSLRVLVLCAQSNATLWRRNGFSLINQIHNYFSPLCRNEMFDRDVLMMQVGAALTPSTK 822
Query: 816 YVNRIIERFGLSNYLSLNL------ERPSEYEP--------ILVQEMLTLIIQILQERRF 861
++ ++ RF L + + E+P++ E ++ +E + +I IL ER
Sbjct: 823 FIFHLLHRFRLFKWATSEFEQDKANEKPAKPESEDLSKTLVMIAEEFIQCLILILCERYT 882
Query: 862 CGLTTA---ESLKRELVHRLAIGDATHSQLVKSLPRDL-SKFDQLQEILDAVAMYSHPSG 917
G+ + +KRE++H L G T S + + + D+ SK L E ++ VA + P
Sbjct: 883 YGVGKTRPMDQMKREVIHILCTGSHTFSHIQQKMSHDINSKRLSLHEAVNLVADFRKPLA 942
Query: 918 FNQGMYSLRWSYWKELDIYHPRWSSRDLQVAE----------ERYLRFCSVSALTAQLPR 967
G + + S + +S D AE E+ +R C+ LP
Sbjct: 943 TTAGQFHCKESSLPTYSPFFMHYSKSDQSAAEQSQARVRAKMEKSVRACAPPI----LPD 998
Query: 968 WTKIYYPLESIAGIATCKVVLQVIRAVL 995
+ + E I I T V++ V+R ++
Sbjct: 999 FQTFF---ERIPEILTTNVLIHVVRLII 1023
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 113 GQRG-VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI-IYTGGGCCDCG 170
+RG +CG V+ N ++ Y C C D TC +C+ CF+ HK H Y + +G G CDCG
Sbjct: 89 ARRGQICGHVFKNGELTYTCLDCATDGTCVMCLQCFEVSIHKSHKYKMHSSSGSGYCDCG 148
Query: 171 DVTAWKREGFCSRHK 185
D AW C+ H+
Sbjct: 149 DADAWTEGYACANHE 163
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 1425 GIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGH---IVDPDQGEFLCPVCRQLANS 1481
G+ +S+C H++H C + + R + R G H +VD + GE+ CP+C++L+N+
Sbjct: 1280 GVDVSTCSHSMHYECYRSLAEANRSRESLRARQVGQHSHKMVDTENGEYQCPLCKRLSNA 1339
Query: 1482 VLPALP-WDLQRINEQPTVSGVG 1503
+P LP + L N TVSG G
Sbjct: 1340 AIPVLPAYQLTNQNGFSTVSGAG 1362
>sp|O60152|UBR1_SCHPO E3 ubiquitin-protein ligase ubr1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubr1 PE=3 SV=1
Length = 1958
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 118 CGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTG--GGCCDCGDVTAW 175
CG ++ ++ YRC+TC D A+CV CF+ +HK+H+ S + GGCCDCG+ AW
Sbjct: 96 CGHIFRKGEVFYRCKTCSVDSNSALCVKCFRATSHKDHETSFTVSAGSGGCCDCGNAAAW 155
Query: 176 KREGFCSRHKGAE-------QIQPLPEKYANSAAPVLDALF 209
+ C H E I +PEK NS +D +
Sbjct: 156 IGDVSCKIHSHEEDATISNDMIDEIPEKLENSIQTTIDCVL 196
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 129/583 (22%), Positives = 223/583 (38%), Gaps = 105/583 (18%)
Query: 682 ITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHI 741
I YD++ Q VS H PLH LL ++ + R L LD
Sbjct: 696 IEYDIALQPVSFHHPLHWLLVYLLSFYVER--------------DNYKLLWTQLDLLA-- 739
Query: 742 LGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDL 801
V +HPLR+ + +Q+ A +W RNG YR + + E +LD+
Sbjct: 740 ------------VTDHPLRVCAWLSQMRAKLWIRNGTTLRDQAHHYRNLSFHEYTFDLDV 787
Query: 802 FLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYE-----PILVQEMLTLIIQIL 856
LLQ D + I RF L + + P ++ I+++E L L+I I+
Sbjct: 788 LLLQLTLTYGDPDAILPSFISRFQLEDQMYGRFFVPHKHYDVSQVTIMMEEFLLLLISIV 847
Query: 857 QERRFCGLTTAES------LKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVA 910
C + ++ + H L +S++ K L + Q + L VA
Sbjct: 848 -----CNTAVLDHWDITRRIEYGIAHILCFRPLPYSEITKRTCEHLLEHKQFESTLKKVA 902
Query: 911 MYSHPSGFNQ-GMYSLRWSYWKELDIYHPRWSSRDLQVAE----ERYLRFCSVSALTAQL 965
+ + G N G ++L+ Y+ +D ++ +S + AE RY + S +
Sbjct: 903 TFRNAEGINDSGSFTLKDEYFDYVDPFNIHYSRNQREEAENILRRRYSKQHSKHLESVVY 962
Query: 966 PRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALAL 1025
+ I + +I + + V + +++ ++ P D G++ TALH L L
Sbjct: 963 EEYHPILHSNITIPILQSDSFVGILWHTIVYAYIY---PYDQGKLEGLVNTALHACLLVL 1019
Query: 1026 DVCFQKKKSGDQSCDIGGSTPILDFASEE----IAEGLNN--GAGKQSLLSLLVFLMG-- 1077
+K GS PI E + EGL + +L S+L +
Sbjct: 1020 ---MSEK----------GSEPIFSKKICENRFPVVEGLQEYCNSPDVTLFSVLCQMKNHR 1066
Query: 1078 --MYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRD 1135
+Y K+ ++ + + E + + I S S + QSL
Sbjct: 1067 NFVYVKEKISLIMKILKSEVPLLYEPVYAETLSISS--------------SKIVQSLS-- 1110
Query: 1136 DTSGSFSASDSEKRKAK---ARERQAAILEKMKAEQFKFLSSI----SSNIEDAPKSAPE 1188
A E+ AK A+ERQA I+E+ + +Q KFL + +S+ E
Sbjct: 1111 ------DAEQQEQHLAKVRMAKERQARIMEQFRMQQNKFLENHALFEASDCEMDEADEFS 1164
Query: 1189 VTNYDAEHVSEESVQDVCALCHDP-NSRTPVSYLILLQKSRLL 1230
VT+ + + + D C LC + + P L+ + +S +L
Sbjct: 1165 VTSSVSTKLFLDPPIDTCLLCQEELKDKRPYGTLVFVLRSSVL 1207
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 1404 RGDRIAAESLVYDGFGPIDCD-GIHLSSCGHAVHQGCLDRYVSS--LKERYNRRIIFEGG 1460
+G+ + ++GF P D G+H + CGH +H C ++++ L R N
Sbjct: 1263 KGNELHQLKDSFNGFPPDQLDRGLHATGCGHFMHIDCFKNHIATVTLATRANPY----RN 1318
Query: 1461 HIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINEQ 1496
H + EFLCP+C+ L N++ P L + IN Q
Sbjct: 1319 HPHNLSMKEFLCPLCKALCNTIFPILWRPKEEINFQ 1354
>sp|Q07963|UBR2_YEAST E3 ubiquitin-protein ligase UBR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UBR2 PE=1 SV=1
Length = 1872
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 122/288 (42%), Gaps = 20/288 (6%)
Query: 753 FVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAP 812
++ E L V Q++ G W RNG Y E D+F +Q A+
Sbjct: 799 YISESALSTLVLIGQINVGFWVRNGTPITHQARMYTKYSMREFTYISDIFNVQFSMAMCN 858
Query: 813 ADLYVNRIIERFGL---SNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAE- 868
D + + R+GL +N + + +E +V E + L+IQ+L E R + +++
Sbjct: 859 PDELMVTYLSRWGLKHWANGVPMYDYPDTETTVAVVNECILLLIQLLTEVRSLVMKSSKE 918
Query: 869 ----SLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGF-NQGMY 923
+ K E++H L +++Q+V +P ++K L+ A Y+ P + G++
Sbjct: 919 GFERTFKSEIIHALCFDTCSYAQIVNCIPEHITKHPSFDIYLEKYANYTSPVSLTDNGIF 978
Query: 924 SLRWSYWKELDIYHPRW-SSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIA 982
L+ Y E+D Y+ SSR V + L ++ + ++ + P + + +
Sbjct: 979 VLKEKYKDEIDPYYIGLSSSRRYDVEKNIRLNMANLKKM-----KYEDTFVPAKKVKDLL 1033
Query: 983 TCKVV--LQVIRAVLFYAVFTDNPTDSRAPY---GVLLTALHLLALAL 1025
+ L I +V + +F N D Y +L +HL+ L +
Sbjct: 1034 KNTLFSGLYSISSVNTFGLFLKNTLDHIIKYDYDNLLPRVVHLIHLCV 1081
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 85 RFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICV 144
++R+ + +W E E + IG C + ++ Y C TC +P IC
Sbjct: 67 KYRDILNGRKWRTLEFENDHHSVGNMHIGT--ACTRLCFPSETIYYCFTCSTNPLYEICE 124
Query: 145 PCFQNGNHKEHDY---SIIYTGGGCCDCGDVTAW 175
CF H H Y ++ G C CGD A+
Sbjct: 125 LCFDKEKHVNHSYVAKVVMRPEGRICHCGDPFAF 158
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 18/78 (23%)
Query: 1419 GPIDCDGIHLS---------SCGHAVHQGCLDRYVSSLK---ERYNRRIIFEGGHIVDPD 1466
P D DG L +CGH H CL ++ S++ + + I G
Sbjct: 1298 NPQDDDGTRLKFTSCEPVLRACGHGSHTKCLSGHMKSIRGIQNQTTKNIPLSYG------ 1351
Query: 1467 QGEFLCPVCRQLANSVLP 1484
G CPVC L+NS LP
Sbjct: 1352 SGLIYCPVCNSLSNSFLP 1369
>sp|O60014|UBR1_KLULA E3 ubiquitin-protein ligase UBR1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=UBR1 PE=3 SV=2
Length = 1945
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 110 SKIGQRG-VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNH-KEHDYSIIYT--GGG 165
SK G +CGA + + YRC+ C D TC +CV CF +H H Y+ I T G
Sbjct: 102 SKFNHAGRICGAKFRVGEPIYRCKECSFDDTCVLCVNCFNPKDHVGHHVYTSICTEFNNG 161
Query: 166 CCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPV 204
CDCGD AW E C KGAE L +++ + +
Sbjct: 162 ICDCGDKEAWNHELNC---KGAEDNGRLEDEFDDHDGKI 197
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 49/270 (18%)
Query: 682 ITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHI 741
I + +S + VS P+H L S ++Q PL VS+ +
Sbjct: 718 IKFQISKERVSFMNPVHTLFSFLVQHV--------------------PLQ-VSI----QV 752
Query: 742 LGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDL 801
L Y + + LR V C+Q+ G W RNG + L +Y+ D+
Sbjct: 753 LSQSKDY---LVISDFALRSVVLCSQIDIGFWVRNGMSVLHQSAYYKN-NPEMSSYSRDI 808
Query: 802 FLLQCCAALAPADL--YVNRIIERFGLSNYLSLNLERPSEYEPI-------LVQEMLTLI 852
L Q + D + +++R+ L ++ ++ PS E + ++Q+ + +
Sbjct: 809 QLNQLAFLIEKNDFQRVIYNMLDRWELLDWFDGSV--PST-ETVYDDKISSIIQQFVAFL 865
Query: 853 IQILQERRFCGL------TTAESLKRELVHRLAIGDATHSQLVKSLPRDLSK-FDQLQEI 905
QIL ER F T ++K ++++L +++ L+ +P L++ Q +
Sbjct: 866 YQILVERDFYKKFDTLEETQLYNIKNAIIYKLYAEPLSYTDLLNDIPDYLTESVSQFDTV 925
Query: 906 LDAVAMYSHPSGF-NQGMYSLRWSYWKELD 934
L+ V+ Y P G + G++ L+ +K +D
Sbjct: 926 LEEVSTYIEPKGLEDNGVFKLKKELYKRID 955
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 19/82 (23%)
Query: 1428 LSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALP 1487
L SC HAVH C Y+ K+RY+ + F+CP+C+ NSV+P
Sbjct: 1268 LVSCNHAVHYRCFKHYID--KKRYSTDL--------------FICPLCQTYCNSVIPVDT 1311
Query: 1488 WDLQ---RINEQPTVSGVGLSL 1506
LQ R+ +Q G+ SL
Sbjct: 1312 VKLQSGDRLLQQKLTGGLDESL 1333
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 1140 SFSASDSEKRKAKARERQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSE 1199
+F ++ E+++ A+ RQ I+ + +Q KF+ E+ E + D E ++
Sbjct: 1131 NFEETEQERKRRLAKNRQQQIMNRFSRQQKKFMDKH----EEYSAGNDEDVDMDGEDLAG 1186
Query: 1200 ESVQDVCALCHD 1211
E + C+LCHD
Sbjct: 1187 ELNEFHCSLCHD 1198
>sp|P19812|UBR1_YEAST E3 ubiquitin-protein ligase UBR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBR1 PE=1 SV=1
Length = 1950
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 123/271 (45%), Gaps = 51/271 (18%)
Query: 682 ITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHI 741
I + VS + V+ PL +LS +I+K VSL
Sbjct: 747 IKFSVSHERVAFMNPLQTMLSFLIEK-------------------------VSLKDAYEA 781
Query: 742 LGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQG-LELD 800
L C + + + LR V C+Q+ G W RNG + L +Y+ E G D
Sbjct: 782 LEDCSDF---LKISDFSLRSVVLCSQIDVGFWVRNGMSVLHQASYYK--NNPELGSYSRD 836
Query: 801 LFLLQCCAALAPADL--YVNRIIERFGLSNYLSLNLE-RPSEYE---PILVQEMLTLIIQ 854
+ L Q D+ + I++R+ L ++ + ++ + + YE ++Q+ + I Q
Sbjct: 837 IHLNQLAILWERDDIPRIIYNILDRWELLDWFTGEVDYQHTVYEDKISFIIQQFIAFIYQ 896
Query: 855 ILQERRFCGLTTA------ESLKRELVHRLAIGDATHSQLVKSLP----RDLSKFDQLQE 904
IL ER++ ++ + +K +++ L + ++S+L++S+P D ++FD E
Sbjct: 897 ILTERQYFKTFSSLKDRRMDQIKNSIIYNLYMKPLSYSKLLRSVPDYLTEDTTEFD---E 953
Query: 905 ILDAVAMYSHPSGF-NQGMYSLRWSYWKELD 934
L+ V+++ P G + G++ L+ S + ++D
Sbjct: 954 ALEEVSVFVEPKGLADNGVFKLKASLYAKVD 984
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 118 CGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEH----DYSIIYTGGGCCDCGDVT 173
CG + + YRC C D TC +C+ CF +H H D +T G CDCGD
Sbjct: 123 CGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSG-ICDCGDEE 181
Query: 174 AWKREGFCSRHKGAEQIQPLPEKYANSA 201
AW C K EQ + E A +A
Sbjct: 182 AWNSPLHC---KAEEQENDISEDPATNA 206
Score = 40.8 bits (94), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 25/78 (32%)
Query: 1430 SCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWD 1489
SC H +H C RYV K+R++ F+CP+C+ +N LP
Sbjct: 1294 SCNHHIHHNCFKRYVQ--KKRFS--------------SNAFICPLCQTFSNCTLPLC--- 1334
Query: 1490 LQRINEQPTVSGVGLSLD 1507
Q + + GLSLD
Sbjct: 1335 ------QTSKANTGLSLD 1346
>sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila melanogaster GN=poe PE=1 SV=1
Length = 5322
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 129 YRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFC---SRHK 185
Y C TC T +C C + HK HD S G CDCG K +G C SR
Sbjct: 1811 YHCHTCNMINTVGVCSVCARVC-HKGHDVSYAKYGNFFCDCGA----KEDGSCQALSRRI 1865
Query: 186 GAEQIQ 191
G+ +++
Sbjct: 1866 GSNEVR 1871
>sp|P04338|NODA_RHILV Nodulation protein A OS=Rhizobium leguminosarum bv. viciae GN=nodA
PE=3 SV=2
Length = 196
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 1306 VKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPD 1356
V+A FP LR + +PF F R + ME + +D +I +R T PD
Sbjct: 106 VRAMFPILRELSVPFAFGTVRHAMRNHMERYCRDGTANIMTGLRVRSTLPD 156
>sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura
GN=poe PE=3 SV=1
Length = 5381
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 129 YRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFC---SRHK 185
Y C TC T +C C + HK HD S G CDCG K +G C SR
Sbjct: 1832 YHCHTCNMINTVGVCSVCARVC-HKGHDVSYAKYGNFFCDCGA----KEDGSCQALSRRL 1886
Query: 186 GAEQIQ 191
G+ +++
Sbjct: 1887 GSGEVR 1892
>sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2
SV=2
Length = 5194
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 129 YRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFC 181
Y C TC+ +C C + HK+H+ S G CDCG K +G C
Sbjct: 1678 YHCHTCKMVDGVGVCTVCAKVC-HKDHEISYAKYGSFFCDCGA----KEDGSC 1725
>sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1
Length = 5180
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 129 YRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFC 181
Y C TC+ +C C + HK+H+ S G CDCG K +G C
Sbjct: 1676 YHCHTCKMVDGVGVCTVCAKVC-HKDHEISYAKYGSFFCDCGA----KEDGSC 1723
>sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1
Length = 5183
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 129 YRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFC 181
Y C TC+ +C C + HK+H+ S G CDCG K +G C
Sbjct: 1677 YHCHTCKMVDGVGVCTVCAKVC-HKDHEISYAKYGSFFCDCGA----KEDGSC 1724
>sp|Q86XK2|FBX11_HUMAN F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE=1 SV=3
Length = 927
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 129 YRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVT 173
YRC TC AICV C + H+ HD I CDCG T
Sbjct: 851 YRCHTCNTTDRNAICVNCIKKC-HQGHDVEFIRHDRFFCDCGAGT 894
>sp|Q7TPD1|FBX11_MOUSE F-box only protein 11 OS=Mus musculus GN=Fbxo11 PE=2 SV=2
Length = 843
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 129 YRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVT 173
YRC TC AICV C + H+ HD I CDCG T
Sbjct: 767 YRCHTCNTTDRNAICVNCIKKC-HQGHDVEFIRHDRFFCDCGAGT 810
>sp|Q7TSL3|FBX11_RAT F-box only protein 11 OS=Rattus norvegicus GN=Fbxo11 PE=2 SV=1
Length = 843
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 129 YRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVT 173
YRC TC AICV C + H+ HD I CDCG T
Sbjct: 767 YRCHTCNTTDRNAICVNCIKKC-HQGHDVEFIRHDRFFCDCGAGT 810
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 631,420,632
Number of Sequences: 539616
Number of extensions: 26195206
Number of successful extensions: 66802
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 66649
Number of HSP's gapped (non-prelim): 111
length of query: 1764
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1632
effective length of database: 120,340,147
effective search space: 196395119904
effective search space used: 196395119904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)